Citrus Sinensis ID: 042242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MAAKEFHDEAEAATNKVSVNRGREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN
Secondary Structure (PSIPRED)
ccccccccHHHHcccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccccccccEEEEEEEcccHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccHHHccccccccccccccccccEEEEEEcccHHHHHHHHHHccccccEEEEEEcccccccccccccEEEEEEcccHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHcccccEccccHHHHcccEEcccHHHHHHHHHHHHHcccccHHHHcccEEccccccEcHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MAAKEFHDEAEAATnkvsvnrgrevdakNVAVIFGVTGLVGKELARRLISTANWKVYgiarkpeitaiqsssycfiscdllnpldiKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYvslqglpeekqvrfydeecprvsksnnFYYVLEDLLKEKLAGKVawsvhrpglllgssHRSLYNFLGCLCVYGAvckhlnlpfvfggTREIWEEYcldgsdsrlVAEQHIWVatnddisstkgqafnaingprftwkeiwpsigkkfgvkvpen
Flexible Loop (DISEMBL)
maakefhdeaeaatnkvsvnrgrevdaknvavifgvtglvgkELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAtnddisstkgqafnaingprftwkeiwpsigkkfgvkvpen
Low Complexity Region (SEG)
MAAKEFHDEAEAATNKVSVNRGREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN
Disordered region (IsUnstruct)
************************VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV*****
Disordered Region (DISOPRED)
*******************************VIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP**
Disordered Region (DISEMBL)
**************NKVSVNRGREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN
Disordered Region (DISPRO)
**************************AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAKEFHDEAEAATNKVSVNRGREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q9STX2	388	3-oxo-Delta(4,5)-steroid	no	no	0.874	0.682	0.401	2e-53
Q6PQJ9	389	3-oxo-Delta(4,5)-steroid	N/A	no	0.894	0.696	0.409	6e-53
O74913	405	Uncharacterized protein C	yes	no	0.864	0.646	0.333	2e-24

>sp|Q9STX2|VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana GN=VEP1 PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 164/279 (58%), Gaps = 14/279 (5%)

Query: 28  KNVAVIFGVTGLVGKELARRL----ISTANWKVYGIARKPEITAIQSSSYCFISCDLLNP 83
           ++VA+I GVTG+VG  LA  L         WKVYG+AR+P  T        +I CD+ + 
Sbjct: 26  ESVALIIGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPTWNADHPIDYIQCDVSDA 85

Query: 84  LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQ 143
            D + KL+ L DVTH+F+VTW ++ +    + CE N +M+ N L AI+P A  L+HV LQ
Sbjct: 86  EDTRSKLSPLTDVTHVFYVTWTNRESES--ENCEANGSMLRNVLQAIIPYAPNLRHVCLQ 143

Query: 144 TGMKHYVS-LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAG--KVAWSVHRP 200
           TG KHY+     +   +    + E+ PR+ +  NFYY  ED+L E++     V WS+HRP
Sbjct: 144 TGTKHYLGPFTNVDGPRHDPPFTEDMPRL-QIQNFYYTQEDILFEEIKKIETVTWSIHRP 202

Query: 201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW 260
            ++ G S  SL N +G LCVY A+CKH   P +F G+++ WE + +  SD+ L+AEQ IW
Sbjct: 203 NMIFGFSPYSLMNIVGTLCVYAAICKHEGSPLLFPGSKKAWEGF-MTASDADLIAEQQIW 261

Query: 261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK 299
            A +      K +AFN  N   F WK +W  + ++FG++
Sbjct: 262 AAVD---PYAKNEAFNCNNADIFKWKHLWKILAEQFGIE 297

Involved in vascular strand development. Catalyzes the stereospecific conversion of progesterone to 5-beta-pregnane-3,20-dione. Can use progesterone, testosterone, 21-acetyl cortexone, 2-cyclohexenone, but-1-en-3-one, ethyl acrylate, ethylmethacrylate, cortisone and canarigenone as substrates, lower activity with 3-methyl-2-cyclohexenone and 3,5,5-trimethyl-2-cyclohexenone as substrate, and no activity with canarigenin, canarigenin digitoxoside and pregnenolone. May be involved in the formation of 5-beta phytoecdysteroids.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3

>sp|Q6PQJ9|5BPOR_DIGLA 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Digitalis lanata PE=1 SV=1

 Score =  207 bits (528), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/298 (40%), Positives = 168/298 (56%), Gaps = 27/298 (9%)

Query: 21  RGREVDAK----NVAVIFGVTGLVGKELARRL----ISTANWKVYGIARKPEITAIQSSS 72
           R  E DA+    +VA+I GVTG++G  LA  L         WKVYG+AR+      + + 
Sbjct: 15  RLEEDDAQPKHSSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNP 74

Query: 73  YCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILP 132
             ++ CD+ +P D + KL+ L DVTH+F+VTWA++  S   + CE N  M  N L+A++P
Sbjct: 75  INYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIP 132

Query: 133 RAKALKHVSLQTGMKHYVSLQGLPEEKQVRF------YDEECPRVSKSNNFYYVLEDLLK 186
               LKH+SLQTG KHY+     P E   +       Y E+ PR+ K  NFYY LED++ 
Sbjct: 133 NCPNLKHISLQTGRKHYMG----PFESYGKIESHDPPYTEDLPRL-KYMNFYYDLEDIML 187

Query: 187 EKLAGK--VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY 244
           E++  K  + WSVHRPG + G S  S+ N +G LCVY A+CKH      F G +  W+ Y
Sbjct: 188 EEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGY 247

Query: 245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
             D SD+ L+AE HIW A +      K +AFN  NG  F WK  W  + ++FGV   E
Sbjct: 248 S-DCSDADLIAEHHIWAAVD---PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVGCGE 301

Involved in cardenolide biosynthesis. Catalyzes the stereospecific conversion of progesterone to 5-beta-pregnane-3,20-dione. Can use progesterone, testosterone, 4-androstene-3,17-dione, cortisol and cortisone as substrates, but not pregnenolone, 21-OH-pregnenolone or isoprogesterone. NADPH could not be replaced by NADH.

Digitalis lanata (taxid: 49450)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

>sp|O74913|YJ72_SCHPO Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.02c PE=4 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 144/285 (50%), Gaps = 23/285 (8%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYCFISCDLLN--PLDI 86
           VA++ G TGL G  + +RL    N K ++ I+R  +    +   +   S DLLN  P DI
Sbjct: 7   VAIVTGATGLNGAAIIKRLSEDDNCKTIHCISRSLKDEYPRKIKHH--SIDLLNEEPKDI 64

Query: 87  KRKLTLLEDVTHIFWVTWAS-QFASDMHKCCEQNKAMMCNALNAI-LPRAKALKHVSLQT 144
            +K +L E V  I +  +A+ +  ++  K CE N  M+ N + A+ L   + L+ V L T
Sbjct: 65  AKKFSL-EGVKGINYAYFAAYKEENNEEKLCEVNGNMLRNFVQALELTSIQTLRRVILTT 123

Query: 145 GMKHYVSLQGLPEEKQVRF----YDEECPRV-SKSNNFYYVLEDLLKEKLAGKV-AWSVH 198
           G+K Y    G     +VR      D   P   S + NFYYV ED+LKE   GK   +++ 
Sbjct: 124 GLKFYGLHLG-----EVRLPMIETDIRVPETFSGTPNFYYVQEDILKEFSNGKKWDYTIA 178

Query: 199 RPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQH 258
            P  + G S  S  N    + +Y  VC+ L+ PF F G  + +  +  D S S+L+A+  
Sbjct: 179 MPNDICGVSKGSYMNEAFTIALYALVCRELHEPFRFPGNEKFYLGFD-DISYSKLIADFQ 237

Query: 259 IWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
           +W+    + S  K   FN +NG   +W   WP I + FGV+VP+N
Sbjct: 238 LWMTFKAECSEEK---FNIVNGDIHSWSRTWPKIAEYFGVEVPKN 279

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
224104280	378	predicted protein [Populus trichocarpa]	0.933	0.748	0.692	1e-115
225434596	374	PREDICTED: uncharacterized protein LOC10	0.914	0.740	0.691	1e-112
255569341	379	conserved hypothetical protein [Ricinus	0.933	0.746	0.658	1e-108
356569537	377	PREDICTED: uncharacterized protein C757.	0.904	0.726	0.684	1e-107
356541657	366	PREDICTED: uncharacterized protein C757.	0.914	0.756	0.685	1e-104
15237744	386	WcaG domain-containing protein [Arabidop	0.933	0.733	0.617	8e-97
297793405	386	hypothetical protein ARALYDRAFT_496000 [	0.914	0.717	0.616	1e-95
449455156	396	PREDICTED: 3-oxo-Delta(4,5)-steroid 5-be	0.924	0.707	0.549	1e-85
395146513	386	hypothetical protein [Linum usitatissimu	0.910	0.715	0.528	1e-82
357456343	390	Progesterone 5-beta-reductase [Medicago	0.861	0.669	0.436	1e-56

>gi|224104280|ref|XP_002313382.1| predicted protein [Populus trichocarpa] gi|222849790|gb|EEE87337.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/283 (69%), Positives = 232/283 (81%)

Query: 20  NRGREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCD 79
           N G E  A  VA+IFGVTGLVG+E+ARRLIS   WKVYG+AR+ E   I S +Y FISCD
Sbjct: 7   NNGAEAAADCVAIIFGVTGLVGREIARRLISKNKWKVYGVARRYESFPILSPNYHFISCD 66

Query: 80  LLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH 139
           LLNP + + KL++++DVTH+FWVTW  +F  D  +CCEQN+AM+ NALN IL ++KALKH
Sbjct: 67  LLNPQETEIKLSMVQDVTHMFWVTWTGEFPLDSRECCEQNEAMVSNALNVILAKSKALKH 126

Query: 140 VSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHR 199
           VSLQTGMKHY+SL+G  + KQV  YDE+CPR S+  NFYY LEDLLK++LAGKVAWSV R
Sbjct: 127 VSLQTGMKHYLSLRGPFDVKQVSVYDEKCPRTSEGYNFYYALEDLLKKRLAGKVAWSVLR 186

Query: 200 PGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHI 259
           PGLL GSS+ +LYN +GCL +YGA+CKHLNLPFVFGGTRE WEE  +DGSD+RLVAEQHI
Sbjct: 187 PGLLTGSSNTALYNIMGCLAIYGAICKHLNLPFVFGGTRECWEEVFIDGSDARLVAEQHI 246

Query: 260 WVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
           W AT+D ISST GQAFNAINGP FTWKEIWP +GKKFG +VPE
Sbjct: 247 WAATDDGISSTDGQAFNAINGPSFTWKEIWPVLGKKFGAEVPE 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434596|ref|XP_002277965.1| PREDICTED: uncharacterized protein LOC100257108 [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/279 (69%), Positives = 226/279 (81%), Gaps = 2/279 (0%)

Query: 27  AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPL 84
           A +VA+IFGVTGLVGKELA  L S   WKVYG+ARKP I     Q     FISCDLLNPL
Sbjct: 8   ANHVAIIFGVTGLVGKELAGILASKKTWKVYGVARKPGIIPFRDQHPDCHFISCDLLNPL 67

Query: 85  DIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQT 144
           + ++K + L DVTH+FWVTWASQF  D  +CCEQNKAMM NALNA+LP A+ L+HVSLQT
Sbjct: 68  EAQQKFSSLRDVTHVFWVTWASQFPLDSEECCEQNKAMMGNALNALLPVAEKLRHVSLQT 127

Query: 145 GMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLL 204
           G KHYVSLQG  ++ +V +YDEE PR S  NNFYY LEDLL+E+LAGKVAWSVHRPGL++
Sbjct: 128 GTKHYVSLQGPFDKGEVCYYDEESPRASGGNNFYYALEDLLRERLAGKVAWSVHRPGLIM 187

Query: 205 GSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN 264
           GSS RS++NF+G LCVYGA+CKHLNLPFVFGG RE WEE  +DGSD+RLVAEQHIW ATN
Sbjct: 188 GSSQRSVFNFMGSLCVYGAICKHLNLPFVFGGMRESWEEAYVDGSDARLVAEQHIWAATN 247

Query: 265 DDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
           ++I  T GQAFNAING  FTWKEIWP++G K GV+VP++
Sbjct: 248 EEIYPTDGQAFNAINGTGFTWKEIWPAVGLKLGVEVPQD 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569341|ref|XP_002525638.1| conserved hypothetical protein [Ricinus communis] gi|223535074|gb|EEF36756.1| conserved hypothetical protein [Ricinus communis]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/284 (65%), Positives = 226/284 (79%), Gaps = 1/284 (0%)

Query: 21  RGREVDAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYCFISCD 79
           R    + + VAVIFG TGLVG+EL RRLIS + WK VYG+AR+ E   IQ+ +Y FISCD
Sbjct: 8   RDSNGETEAVAVIFGATGLVGRELVRRLISKSKWKKVYGVARRFESFPIQNPNYHFISCD 67

Query: 80  LLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH 139
           LL P + ++KL++++D TH+FWVTWA QF  D  +CC+QN AMM NALNAIL +  AL+H
Sbjct: 68  LLIPQETQKKLSVIQDATHMFWVTWAGQFPLDSKECCDQNMAMMSNALNAILQQTNALQH 127

Query: 140 VSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHR 199
           VSLQTGMKHYVSLQ      +V FY E+CPR S   NFYYVLED LKE+LAGKVAWSV R
Sbjct: 128 VSLQTGMKHYVSLQQGHNANRVCFYGEDCPRASGGCNFYYVLEDFLKERLAGKVAWSVLR 187

Query: 200 PGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHI 259
           PGLL+GSS+R++YN +G LCVYGA+CK+L+L FVFGGT E WEE C+DGSD+RLVAEQHI
Sbjct: 188 PGLLMGSSNRTMYNVMGSLCVYGAICKYLHLAFVFGGTMECWEEACIDGSDARLVAEQHI 247

Query: 260 WVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
           W ATN +ISST GQAFNAINGP FTWKEIWP +GKK  V++P++
Sbjct: 248 WAATNGEISSTSGQAFNAINGPSFTWKEIWPILGKKLEVEMPQD 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569537|ref|XP_003552956.1| PREDICTED: uncharacterized protein C757.02c-like [Glycine max]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/279 (68%), Positives = 226/279 (81%), Gaps = 5/279 (1%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEI--TAIQSSSYCFISCDLLNPLDI 86
           VA+IFGVTGLVG+ELARRL+   +WK VYGIAR PE   T I S  Y FISC+LLNPL  
Sbjct: 11  VAIIFGVTGLVGRELARRLLLEPSWKKVYGIARNPETPPTLIISPCYHFISCNLLNPLKT 70

Query: 87  KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM 146
           ++KL+ L+DVTH+FWVTWASQF S+  + C+QNKAMMCNALN+++  AK LKHVSLQTG 
Sbjct: 71  QKKLSGLQDVTHVFWVTWASQFPSETQESCDQNKAMMCNALNSMVSVAKNLKHVSLQTGT 130

Query: 147 KHYVSLQGLPEEKQVRFY--DEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLL 204
           KHYVSL    +E++  +Y   EE PR+S+S NFYY LEDLL EKL+GKV+WSVHRPGLL 
Sbjct: 131 KHYVSLHPPFDEEKFHYYYYHEEFPRMSRSLNFYYALEDLLMEKLSGKVSWSVHRPGLLF 190

Query: 205 GSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN 264
           GSS RS YNF+G LCVYGA+CKHL LPFVFGGTR+ WEE  +DGSD+RLVA+QHIW ATN
Sbjct: 191 GSSVRSFYNFMGSLCVYGAICKHLRLPFVFGGTRKCWEESYIDGSDARLVADQHIWAATN 250

Query: 265 DDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
            DI S  GQAFN+INGP FTWKEIWP +GKK GV+VP++
Sbjct: 251 GDIISINGQAFNSINGPSFTWKEIWPIVGKKMGVQVPQD 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541657|ref|XP_003539290.1| PREDICTED: uncharacterized protein C757.02c-like [Glycine max]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/283 (68%), Positives = 229/283 (80%), Gaps = 6/283 (2%)

Query: 26  DAKNVAVIFGVTGLVGKELARRLIST-ANWK-VYGIARKPEI--TAIQSSSYCFISCDLL 81
           + KNVA+IFGVTGLVG+ELARRL+    +WK VYGIAR PE   T I S  Y FISC++L
Sbjct: 8   ETKNVAIIFGVTGLVGRELARRLLLLEPSWKKVYGIARNPETLPTLIISPCYHFISCNML 67

Query: 82  NPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS 141
           NPL+ ++KL+ L+DVTH+FWVTWASQF S+  + CEQNKAMMCNALN +L  AK LKHVS
Sbjct: 68  NPLETQKKLSCLQDVTHMFWVTWASQFPSETQESCEQNKAMMCNALNTMLSVAKNLKHVS 127

Query: 142 LQTGMKHYVSLQGLPEEKQVRFY--DEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHR 199
           LQTG KHY+SL    +E++++FY   EE PR+SKS NFYY LEDLL EKL+GKV+WSVHR
Sbjct: 128 LQTGTKHYISLHPPFDEEKLQFYYYHEEFPRMSKSLNFYYALEDLLMEKLSGKVSWSVHR 187

Query: 200 PGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHI 259
           PGLL GSS RS YNF+G LCVYGA+CKHL LPFVFGGTR+ WEE  +DGSD+RLVA+QHI
Sbjct: 188 PGLLFGSSVRSFYNFMGSLCVYGAICKHLRLPFVFGGTRKCWEESYIDGSDARLVADQHI 247

Query: 260 WVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
           W A N D+ ST GQAFN+INGP FTWKEIWP IGKK  V+VP+
Sbjct: 248 WAAKNSDMISTNGQAFNSINGPSFTWKEIWPIIGKKLEVQVPQ 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237744|ref|NP_200683.1| WcaG domain-containing protein [Arabidopsis thaliana] gi|8843795|dbj|BAA97343.1| induced upon wounding stress-like protein [Arabidopsis thaliana] gi|119360131|gb|ABL66794.1| At5g58750 [Arabidopsis thaliana] gi|332009711|gb|AED97094.1| WcaG domain-containing protein [Arabidopsis thaliana]

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 181/293 (61%), Positives = 220/293 (75%), Gaps = 10/293 (3%)

Query: 18  SVNRGREVDAKNVAVIFGVTGLVGKELARRLI-STANWKVYGIARKPEITAIQSSSYCFI 76
           S+ R  EVD +NVA+IFGVTGLVG+E+ + L+ S   W++YG+AR PEI ++ +  Y FI
Sbjct: 7   SLMRRNEVD-ENVALIFGVTGLVGREIVKTLLMSKPGWRIYGVARNPEINSM-TKMYNFI 64

Query: 77  SCDLLNPLDIKRKLTLLED-VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK 135
           SCDLLN  + K++L+ L+D V+H+FWVTW+ +F  D  +CC QNK M+ NAL+AILP AK
Sbjct: 65  SCDLLNASETKQRLSPLQDIVSHVFWVTWSGEFPLDTDECCVQNKTMLMNALDAILPNAK 124

Query: 136 ALKHVSLQTGMKHYVSL----QGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLA- 190
            LKH SLQTGMKHYVSL        E   + +Y EECPR S   NFYYVLEDLLKEK+  
Sbjct: 125 RLKHFSLQTGMKHYVSLVEETMARGEGSSLYYYSEECPRKSSGKNFYYVLEDLLKEKITR 184

Query: 191 GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD 250
             V WSV RPGLL+GSS R+LYNF+G LCVYGA+CK+LNLPFVFGGTRE WEE  +DGSD
Sbjct: 185 SSVVWSVQRPGLLMGSSSRTLYNFMGSLCVYGAMCKYLNLPFVFGGTRECWEESYIDGSD 244

Query: 251 SRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
           S LVAEQHI+ AT+  +   KG+AFNAING  FTWKEIWP IGKK GV+V E 
Sbjct: 245 SNLVAEQHIFAATSGKVRE-KGEAFNAINGVGFTWKEIWPEIGKKLGVQVNET 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793405|ref|XP_002864587.1| hypothetical protein ARALYDRAFT_496000 [Arabidopsis lyrata subsp. lyrata] gi|297310422|gb|EFH40846.1| hypothetical protein ARALYDRAFT_496000 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 180/292 (61%), Positives = 218/292 (74%), Gaps = 15/292 (5%)

Query: 22  GREVDAKNVAVIFGVTGLVGKELARRLI-STANWKVYGIARKPEITAIQSSSYCFISCDL 80
           GR    +NVA+IFGVTGLVG+E+ +RL+ S   W++YG+AR PEI ++ +  Y FISCDL
Sbjct: 10  GRNEVDENVALIFGVTGLVGREIVKRLLTSKPRWRIYGVARNPEINSM-TKMYNFISCDL 68

Query: 81  LNPLDIKRKLTLLED-VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH 139
           LN  + K++L  L+D V+H+FWVTW+ ++  D  +CC QNK M+ NAL+AILP AK LKH
Sbjct: 69  LNASETKQRLFPLQDIVSHVFWVTWSGEYPLDTDECCVQNKTMLMNALDAILPNAKRLKH 128

Query: 140 VSLQTGMKHYVSLQGLPEEKQVR-------FYDEECPRVSKSNNFYYVLEDLLKEKLAGK 192
            SLQTGMKHYVSL    EE   R       +Y EECPR S   NFYYVLEDLLKEK+ G 
Sbjct: 129 FSLQTGMKHYVSL---VEETLFRGEGSSLCYYTEECPRKSSGMNFYYVLEDLLKEKITGS 185

Query: 193 -VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDS 251
            V WSV RPGLL+GSS R+LYNF+G LCVYGA+CK+LNLPFVFGGTRE WEE  +DGSDS
Sbjct: 186 SVVWSVQRPGLLMGSSTRTLYNFMGSLCVYGAMCKYLNLPFVFGGTRECWEESYIDGSDS 245

Query: 252 RLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
            LVAEQHI+ A++  +   KG+AFNAING  FTWKEIWP IGKK GV+V E 
Sbjct: 246 NLVAEQHIFAASSGKVRE-KGEAFNAINGVGFTWKEIWPEIGKKLGVQVNET 296

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455156|ref|XP_004145319.1| PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Cucumis sativus] gi|449472468|ref|XP_004153604.1| PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Cucumis sativus] gi|449523297|ref|XP_004168660.1| PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Cucumis sativus]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/291 (54%), Positives = 209/291 (71%), Gaps = 11/291 (3%)

Query: 19  VNRGREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-ITAIQSSSYCFIS 77
           +N   + + + VAVIFGVTGLVGK+LA+ L+STA WKVYG+AR+P+ ++ I    + FIS
Sbjct: 6   INTNLDANGELVAVIFGVTGLVGKQLAKTLLSTAGWKVYGVARRPDNVSPISHPKFHFIS 65

Query: 78  CDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL 137
           CDLL+   +++ L+ +  VTH+FW+TWA+Q   D   C +QN+AM+ NAL+AILP A AL
Sbjct: 66  CDLLDRRSVQQNLSPVRHVTHLFWITWAAQLRLDSPDCSDQNRAMLANALDAILPSAPAL 125

Query: 138 KHVSLQTGMKHYVSLQGLPEEKQVR-----FYDEECPRVSKSNNFYYVLEDLLKEKLA-G 191
           +HVSLQTG+KHY SL  L             Y E+ PR    NNFYYVLEDLL+E+L+ G
Sbjct: 126 RHVSLQTGIKHYASLTRLAAGCGGGGEGEVVYCEDSPRAESGNNFYYVLEDLLRERLSCG 185

Query: 192 K--VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS 249
           +  VAWSV RPGL+LG S+R+ +NF+G LCVYGA+CK L +PFVFGGT   WEE  +DGS
Sbjct: 186 RRMVAWSVLRPGLILGCSNRTFFNFMGSLCVYGAICKKLKMPFVFGGTAACWEEVYIDGS 245

Query: 250 DSRLVAEQHIWVATND-DISST-KGQAFNAINGPRFTWKEIWPSIGKKFGV 298
           D+RL AEQHIWVAT   +I++T  G+AFN  NG  F WKEIW ++ +K GV
Sbjct: 246 DARLTAEQHIWVATKAVEINATADGEAFNVCNGWSFRWKEIWGAVAEKLGV 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146513|gb|AFN53668.1| hypothetical protein [Linum usitatissimum]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 200/282 (70%), Gaps = 6/282 (2%)

Query: 27  AKNVAVIFGVTGLVGKELARRLIS-TANWKVYGIARKPEITAIQSSSYCFISCDLLNPLD 85
           +KNVA+IFGVTGLVG+E+A++LIS T +W VYG++R+P+   I S +Y FI CDLLNPLD
Sbjct: 16  SKNVAIIFGVTGLVGREIAKKLISITESWTVYGVSRRPDKLPISSPNYHFIPCDLLNPLD 75

Query: 86  IKRKLTLLED-VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILP-RAKALKHVSLQ 143
            + KL+ + + +TH+FWVTWA+ F  D  +CC++N++MM NAL  IL   +++LKHVSLQ
Sbjct: 76  TQTKLSPISNLITHLFWVTWAANFPLDSKQCCDENRSMMSNALQPILSSNSQSLKHVSLQ 135

Query: 144 TGMKHYVSLQGLPEEKQVR-FYDEECPRVSKSNNFYY--VLEDLLKEKLAGKVAWSVHRP 200
           TG+KHY+SL+       +R FYDE+CPR     NFYY        K        WSV RP
Sbjct: 136 TGLKHYISLRDFVNGGGIRRFYDEDCPRAEDGFNFYYSLEDLLKEKLLEGSGAGWSVIRP 195

Query: 201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW 260
           GL++GSS  S+YN +G LCVYG +C+ ++LPFVFGGT+E WEE  +DGSDS LVAE HIW
Sbjct: 196 GLVMGSSTTSIYNVIGSLCVYGVICRRMDLPFVFGGTKECWEEAYIDGSDSGLVAEHHIW 255

Query: 261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
            AT++ + ST  +A N++NG  F+WK IW  I +K GV+  E
Sbjct: 256 AATDERVRSTAERALNSVNGSSFSWKGIWAVIAEKIGVEASE 297

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456343|ref|XP_003598452.1| Progesterone 5-beta-reductase [Medicago truncatula] gi|355487500|gb|AES68703.1| Progesterone 5-beta-reductase [Medicago truncatula]

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/284 (43%), Positives = 173/284 (60%), Gaps = 23/284 (8%)

Query: 28  KNVAVIFGVTGLVGKELARRL----ISTANWKVYGIARKPEITAIQSSSYCFISCDLLNP 83
           +NVA++ GVTG+VG  LA  L         WKVYG+AR+P  +        +I CD+ +P
Sbjct: 26  QNVALVVGVTGIVGNSLAEILPLADTPGGRWKVYGVARRPRPSWNADHPVEYIQCDITDP 85

Query: 84  LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQ 143
            D   KL++L DVTH+F+V WAS+      + CE N  M+ NAL A++P A  L+HVS+Q
Sbjct: 86  NDATTKLSVLTDVTHVFYVCWASR--PTEAENCEINGTMLKNALTAVIPNAPNLRHVSIQ 143

Query: 144 TGMKHYVSLQGLPEEK--QVRF----YDEECPRVSKSNNFYYVLEDLLKEKLAGK--VAW 195
           TG KHYV     P E   ++++    Y E+ PR+   +NFYY LED+L E+   K  V+W
Sbjct: 144 TGGKHYVG----PFESFGKIKYHEPPYTEDMPRLD-YHNFYYTLEDVLFEETGKKEGVSW 198

Query: 196 SVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVA 255
           SVHRP L+ G S  S+ N +G +CVY A+CKH  +P  F GT+  WE Y +  SD+ L+A
Sbjct: 199 SVHRPLLIFGFSPYSMMNIIGTICVYAAICKHEGVPLRFPGTKLAWENYYM-ASDADLIA 257

Query: 256 EQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK 299
           EQHIW A +      K +AFN  NG  F WK++W  I ++FG++
Sbjct: 258 EQHIWAAVD---PYAKNEAFNCSNGDVFRWKQLWKVIAEQFGIE 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2178793	386	AT5G58750 [Arabidopsis thalian	0.930	0.730	0.619	2.1e-93
TAIR|locus:2135932	388	VEP1 "VEIN PATTERNING 1" [Arab	0.874	0.682	0.405	7.2e-52
UNIPROTKB|Q882D3	353	PSPTO_2695 "Uncharacterized pr	0.838	0.719	0.333	1.8e-32
UNIPROTKB|Q48IK0	353	PSPPH_2587 "Aldo-keto reductas	0.838	0.719	0.326	2.6e-31
POMBASE|SPCC757.02c	405	SPCC757.02c "epimarase (predic	0.874	0.654	0.333	2.8e-27
ASPGD|ASPL0000051603	376	AN9028 [Emericella nidulans (t	0.864	0.696	0.300	1.6e-24
UNIPROTKB|Q4K649	386	PFL_5207 "Uncharacterized prot	0.844	0.663	0.285	3.8e-20
ASPGD|ASPL0000040978	437	AN2921 [Emericella nidulans (t	0.864	0.599	0.301	1.5e-19
ASPGD|ASPL0000017248	424	AN4177 [Emericella nidulans (t	0.861	0.615	0.236	4.5e-11

TAIR|locus:2178793 AT5G58750 [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 181/292 (61%), Positives = 220/292 (75%)

Query:    18 SVNRGREVDAKNVAVIFGVTGLVGKELARRLI-STANWKVYGIARKPEITAIQSSSYCFI 76
             S+ R  EVD +NVA+IFGVTGLVG+E+ + L+ S   W++YG+AR PEI ++ +  Y FI
Sbjct:     7 SLMRRNEVD-ENVALIFGVTGLVGREIVKTLLMSKPGWRIYGVARNPEINSM-TKMYNFI 64

Query:    77 SCDLLNPLDIKRKLTLLED-VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK 135
             SCDLLN  + K++L+ L+D V+H+FWVTW+ +F  D  +CC QNK M+ NAL+AILP AK
Sbjct:    65 SCDLLNASETKQRLSPLQDIVSHVFWVTWSGEFPLDTDECCVQNKTMLMNALDAILPNAK 124

Query:   136 ALKHVSLQTGMKHYVSL----QGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLA- 190
              LKH SLQTGMKHYVSL        E   + +Y EECPR S   NFYYVLEDLLKEK+  
Sbjct:   125 RLKHFSLQTGMKHYVSLVEETMARGEGSSLYYYSEECPRKSSGKNFYYVLEDLLKEKITR 184

Query:   191 GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD 250
               V WSV RPGLL+GSS R+LYNF+G LCVYGA+CK+LNLPFVFGGTRE WEE  +DGSD
Sbjct:   185 SSVVWSVQRPGLLMGSSSRTLYNFMGSLCVYGAMCKYLNLPFVFGGTRECWEESYIDGSD 244

Query:   251 SRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
             S LVAEQHI+ AT+  +   KG+AFNAING  FTWKEIWP IGKK GV+V E
Sbjct:   245 SNLVAEQHIFAATSGKVRE-KGEAFNAINGVGFTWKEIWPEIGKKLGVQVNE 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2135932 VEP1 "VEIN PATTERNING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 113/279 (40%), Positives = 166/279 (59%)

Query:    28 KNVAVIFGVTGLVGKELARRL-ISTAN---WKVYGIARKPEITAIQSSSYCFISCDLLNP 83
             ++VA+I GVTG+VG  LA  L +S      WKVYG+AR+P  T        +I CD+ + 
Sbjct:    26 ESVALIIGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPTWNADHPIDYIQCDVSDA 85

Query:    84 LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQ 143
              D + KL+ L DVTH+F+VTW ++ +   +  CE N +M+ N L AI+P A  L+HV LQ
Sbjct:    86 EDTRSKLSPLTDVTHVFYVTWTNRESESEN--CEANGSMLRNVLQAIIPYAPNLRHVCLQ 143

Query:   144 TGMKHYVS-LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAG--KVAWSVHRP 200
             TG KHY+     +   +    + E+ PR+ +  NFYY  ED+L E++     V WS+HRP
Sbjct:   144 TGTKHYLGPFTNVDGPRHDPPFTEDMPRL-QIQNFYYTQEDILFEEIKKIETVTWSIHRP 202

Query:   201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW 260
              ++ G S  SL N +G LCVY A+CKH   P +F G+++ WE + +  SD+ L+AEQ IW
Sbjct:   203 NMIFGFSPYSLMNIVGTLCVYAAICKHEGSPLLFPGSKKAWEGF-MTASDADLIAEQQIW 261

Query:   261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK 299
              A +      K +AFN  N   F WK +W  + ++FG++
Sbjct:   262 AAVDP---YAKNEAFNCNNADIFKWKHLWKILAEQFGIE 297

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0008202 "steroid metabolic process" evidence=IDA

GO:0035671 "enone reductase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q882D3 PSPTO_2695 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 91/273 (33%), Positives = 137/273 (50%)

Query:    31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKL 90
             A++ G +G+VG  + + L+   +W+V  ++R P            ++ DL +P  +   L
Sbjct:     5 ALVVGASGIVGSAITQLLLEN-DWQVAALSRSPSTRP----GVIPVAADLQDPASVTAAL 59

Query:    91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYV 150
               L   THIF  TW+ Q A++       N AM+ N L+A+ P A ++KHV+L TG+KHY+
Sbjct:    60 ADLRP-THIFITTWSRQ-ATEAENI-RVNAAMVRNVLDAVRP-AGSVKHVALVTGLKHYL 115

Query:   151 S---LQGLPEEKQVRFYDEECPRVSKSNNFYYVLED-LLKEKLAGKVAWSVHRPGLLLGS 206
                   G     Q  F + + PR+    NFYY  ED +       +  WSVHRP  + G 
Sbjct:   116 GPFEAYGKGTLPQTPFRESQ-PRLD-IENFYYAQEDEVFAAAEKDRFTWSVHRPHTVTGV 173

Query:   207 SHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD 266
             +  +  N    L VY ++CK    PFVF G+R  W+    D +D+R +A Q +W AT   
Sbjct:   174 AVGNAMNMATTLAVYASICKATGRPFVFPGSRVQWDSLT-DMTDARQLAHQQLWAATTP- 231

Query:   267 ISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK 299
               +   QAFN  NG  F W  +W  I   FG++
Sbjct:   232 --AAANQAFNITNGDVFRWSWMWGQIAGYFGLE 262

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48IK0 PSPPH_2587 "Aldo-keto reductase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 89/273 (32%), Positives = 136/273 (49%)

Query:    31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKL 90
             A++ G +G+VG  + + L+   +W+V  ++R P            ++ DL NP  +   L
Sbjct:     5 ALVVGASGIVGSAITQLLLEN-DWQVAALSRSPSARP----GVIPVAADLQNPKSVSAAL 59

Query:    91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYV 150
               L+  TH+F  TW+ Q A++       N AM+ N L+A+ P A ++KHV+L TG+KHY+
Sbjct:    60 ADLKP-THVFITTWSRQ-ATEAENI-RVNAAMVRNVLDAVRP-AGSVKHVALVTGLKHYL 115

Query:   151 S---LQGLPEEKQVRFYDEECPRVSKSNNFYYVLED-LLKEKLAGKVAWSVHRPGLLLGS 206
                   G     Q  F + +  R+    NFYY  ED +          WSVHRP  + G 
Sbjct:   116 GPFEAYGKGTLPQTPFRETQA-RLD-IENFYYAQEDEVFAAAEKDGFTWSVHRPHTVTGV 173

Query:   207 SHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD 266
             +  +  N    L VY ++CK    PFVF G+R  W+    D +D+R +A Q +W AT   
Sbjct:   174 AVGNAMNMATTLAVYASICKATGRPFVFPGSRVQWDSLT-DMTDARQLAHQQLWAATTP- 231

Query:   267 ISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK 299
               +   QAFN  NG  F W  +W  I + F ++
Sbjct:   232 --AAANQAFNITNGDVFRWSWMWGQIAEYFDLQ 262

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

POMBASE|SPCC757.02c SPCC757.02c "epimarase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 94/282 (33%), Positives = 142/282 (50%)

Query:    30 VAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYCFISCDLLN--PLDI 86
             VA++ G TGL G  + +RL    N K ++ I+R  +    +   +   S DLLN  P DI
Sbjct:     7 VAIVTGATGLNGAAIIKRLSEDDNCKTIHCISRSLKDEYPRKIKHH--SIDLLNEEPKDI 64

Query:    87 KRKLTLLEDVTHIFWVTWAS-QFASDMHKCCEQNKAMMCNALNAI-LPRAKALKHVSLQT 144
              +K +L E V  I +  +A+ +  ++  K CE N  M+ N + A+ L   + L+ V L T
Sbjct:    65 AKKFSL-EGVKGINYAYFAAYKEENNEEKLCEVNGNMLRNFVQALELTSIQTLRRVILTT 123

Query:   145 GMKHYVSLQGLPEEKQVRFYDEECPRV-SKSNNFYYVLEDLLKEKLAGKVAW--SVHRPG 201
             G+K Y    G      +   D   P   S + NFYYV ED+LKE   GK  W  ++  P 
Sbjct:   124 GLKFYGLHLGEVRLPMIET-DIRVPETFSGTPNFYYVQEDILKEFSNGK-KWDYTIAMPN 181

Query:   202 LLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV 261
              + G S  S  N    + +Y  VC+ L+ PF F G  + +  +  D S S+L+A+  +W+
Sbjct:   182 DICGVSKGSYMNEAFTIALYALVCRELHEPFRFPGNEKFYLGFD-DISYSKLIADFQLWM 240

Query:   262 ATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
                 + S  K   FN +NG   +W   WP I + FGV+VP+N
Sbjct:   241 TFKAECSEEK---FNIVNGDIHSWSRTWPKIAEYFGVEVPKN 279

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000051603 AN9028 [Emericella nidulans (taxid:162425)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 85/283 (30%), Positives = 145/283 (51%)

Query:    31 AVIFGVTGLVGKELARRLI--STAN-W-KVYGIARKPEITAIQSSSYCFISCDLLNPLD- 85
             A+I G  G+ G  +   L+  +TA+ W ++   +R P  TA+  S   FI+ D  NP + 
Sbjct:     5 ALITGANGITGSAILEYLVKNTTASEWERIIITSRSPLKTAVNDSRVEFIALDFSNPPEK 64

Query:    86 -IKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQT 144
                +  +   DVTH ++ ++  +   D  +  E N+++  N LNA++  AK L++ +LQT
Sbjct:    65 LADQMRSQCADVTHAYFSSYVHK--DDFAELNEANRSLFENFLNALVDVAKGLQNCTLQT 122

Query:   145 GMKHY-VSLQGLPEEKQVRFYDEECPRVSKSN-NFYYVLEDLLKEKLAGKV-AWSVHRPG 201
             G K+Y V ++ +P         E  PR+ ++  NFYY  ED L EK  G    W+V RP 
Sbjct:   123 GGKYYNVHVRPVPWPAH-----EGHPRLVRAEENFYYHQEDFLAEKQRGSNWTWNVIRPE 177

Query:   202 LLLGSSHR-SLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW 260
              ++G + + +  N    + +Y  + K L +      T   +     D SD+RL+A+  I+
Sbjct:   178 AIIGYTTKPNGMNEALTIALYFLINKELGVEAPMP-TNAAYFNGVDDVSDARLIADLTIY 236

Query:   261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
              +T+ + ++   +AFN  NG  F+W+ +WP +   FG K   N
Sbjct:   237 ASTHKNCAN---EAFNVTNGDVFSWRYMWPRLADWFGAKASSN 276

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4K649 PFL_5207 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 241 (89.9 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 77/270 (28%), Positives = 121/270 (44%)

Query:    32 VIFGVTGLVGKELARRLISTANWKVYGIARK-PEITAIQSS-SYCFISCDLLNPLDIKRK 89
             ++ G  G+VG  +   +  T  W++   AR+ P  + +  S +   IS DLL+     R 
Sbjct:    38 LVIGGYGVVGTAVVELMHRTPGWQLTTAARRRPPTSLLDGSPAPAHISADLLDVAGTARA 97

Query:    90 LTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHY 149
                L  VT + +  ++ +    M      N AM+ ++L A+      L+ V L  G K Y
Sbjct:    98 FAGLGSVTDLVFCAYSER--ESMAATVAPNLAMLEHSLKALRQAGARLRQVVLIGGGKSY 155

Query:   150 VSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGK-VAWSVHRPGLLLGSSH 208
                 G  +        E  PR      FY   EDLL  +   +  AW+V RP  ++G S 
Sbjct:   156 GEHLGSYKTPA----KESDPRFM-GPIFYNDQEDLLWHEAEREGFAWTVLRPDGVMGPSL 210

Query:   209 RSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDIS 268
              S  N L  +  + A+ + LNLP  F G+ + W       +DSR++A+  +W  T+ +  
Sbjct:   211 NSPMNILTGIASFAAISQALNLPLRFPGSLQAWSALH-QATDSRVLAQAVLWALTSPNAQ 269

Query:   269 STKGQAFNAINGPRFTWKEIWPSIGKKFGV 298
                 Q FN  NG  F W+ +WP I   FG+
Sbjct:   270 Q---QVFNVTNGDHFRWQHLWPQIAGFFGL 296

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000040978 AN2921 [Emericella nidulans (taxid:162425)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 89/295 (30%), Positives = 129/295 (43%)

Query:    31 AVIFGVTGLVGKELARRLISTA--NW-KVYGIARK--PE--ITAIQSSSYCF--ISCDLL 81
             AV+ G  GL G  + R ++S A   W K+Y ++R+  P    T +   +     I  D L
Sbjct:    30 AVVTGANGLSGYNMVR-VLSAAPERWSKIYCLSRRAAPSNFFTDLGDGAARVEHIPVDFL 88

Query:    82 NPL-DIKRKLTL-LEDVTHIFWVTWASQ--------FASDMHKCCEQNKAMMCNALNAIL 131
             +   +I  +L   +  V ++F+ ++             SD     + N  M+ N L A+ 
Sbjct:    89 SETAEIASRLREDIPKVDYVFFFSYMQPEQEGNVLGMWSDAEALTKVNSTMLNNFLGALQ 148

Query:   132 PRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAG 191
                   K   +QTG KHY    G P      F  +   RVS   NFYY+ ED L    AG
Sbjct:   149 EANLHPKRFLIQTGAKHYGFHIG-PSTNP-SFETDR--RVSLEQNFYYLQEDALAAYCAG 204

Query:   192 K-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE-EYCLDGS 249
               V W+V RP  ++G+      N +  L +Y A+  HLN P  F G    W+ E C   S
Sbjct:   205 TGVGWNVVRPSYIIGAVRDGALNHMIGLAIYAAIQAHLNQPLYFPGDYIAWDREVCQ--S 262

Query:   250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV--KVPE 302
              + L A    W     D    + QAFN  +G  FTW   WP++ + +G   K PE
Sbjct:   263 TALLNAYFEEWAVLTPD---AENQAFNIQDGLPFTWGRFWPNLAEWYGTTWKAPE 314

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000017248 AN4177 [Emericella nidulans (taxid:162425)]

 Score = 177 (67.4 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 67/283 (23%), Positives = 115/283 (40%)

Query:    31 AVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYCFISCDLLNPLDIKRK 89
             A++ G TG+ G  +   L   A++K +Y ++R       +       + DL    D   K
Sbjct:     4 AIVTGATGITGSAIVHHLQKDASYKKIYALSRSDP--GYKDPKLQHAAIDLQGSADDMAK 61

Query:    90 LTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMK 147
                     ++++  + +    D  + C  N  M+ N + A+        LK   L  G K
Sbjct:    62 TLSGISAEYVYFCAYMAH--DDPAELCRINGTMISNFIQALEKTGAISKLKRFILTCGFK 119

Query:   148 HY-VSLQGL--PEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLA---GKVAWSVHRPG 201
              Y V L     P  ++    + E    +   NFY+  + +L E  A   G+  W V  P 
Sbjct:   120 QYSVHLGNAKQPFHEEDPVLEGEVGGETWPPNFYFTQQRILAEAAARSEGQWDWVVTLPQ 179

Query:   202 LLLGSSHRSLYN---FLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQH 258
              +LG +  +  N    +G  C    V     LPF   G +  +  +    + + L A+  
Sbjct:   180 DVLGFARGNFMNEATAVGLYCTVSKVLPGSELPFP--GCKAGYFAFNT-WTSANLHAKFC 236

Query:   259 IWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP 301
             +W AT           FN ING   +W+++WP + ++FG K+P
Sbjct:   237 LWAAT---AKGAGNNIFNVINGDTESWQDLWPRLARRFGCKIP 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      303       303   0.00097  115 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  252 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.76u 0.18s 22.94t   Elapsed:  00:00:01
  Total cpu time:  22.76u 0.18s 22.94t   Elapsed:  00:00:01
  Start:  Thu May  9 23:04:24 2013   End:  Thu May  9 23:04:25 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
cd08948	308	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta	1e-100
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	4e-10
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	2e-07
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	3e-05
cd05260	316	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase	5e-04
cd05250	214	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical	6e-04
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	0.003

>gnl|CDD|187652 cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs

 Score =  297 bits (762), Expect = e-100
 Identities = 104/278 (37%), Positives = 143/278 (51%), Gaps = 11/278 (3%)

Query: 30  VAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITAIQSSSYCFISCDLLNPLD-- 85
           VA++ G TG+ G  L   L+S     WKVYG++R+P  T         I  DLL+P D  
Sbjct: 1   VALVVGATGISGWALVEHLLSDPGTWWKVYGLSRRPLPTEDDPRLVEHIGIDLLDPADTV 60

Query: 86  IKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTG 145
           ++ KL  LEDVTH+F+  +  +   D  +  E N AM+ N L+A+ P +  LKHV LQTG
Sbjct: 61  LRAKLPGLEDVTHVFYAAYIERP--DEAELVEVNGAMLRNFLDALEPASPNLKHVVLQTG 118

Query: 146 MKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGK-VAWSVHRPGLLL 204
            KHY    G  +  +      E P      NFYY  EDLL E   GK   WSV RP  ++
Sbjct: 119 TKHYGVHLGPFKTPRPEEPAREDPPRLLPPNFYYDQEDLLFEAAKGKGWTWSVLRPDAII 178

Query: 205 GSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN 264
           G +  +  N    L VY A+C+ L  P  F G+         D +D+RL+A   IW AT+
Sbjct: 179 GFAPGNAMNLALTLAVYAAICRELGAPLRFPGS-PAAWNALSDATDARLLARFTIWAATH 237

Query: 265 DDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
            +      +AFN  NG  F WKE+WP + + FG++   
Sbjct: 238 PE---AANEAFNVTNGDVFRWKELWPRLAEYFGLEGAP 272

5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 25/183 (13%)

Query: 33  IFGVTGLVGKELARRLISTANWKVYGIAR--KPEITAIQSSSYCFISCDLLNPLDIKRKL 90
           I G TG +G+ LAR L+     +V  + R  K      Q      +  DL +   +    
Sbjct: 3   ILGATGFIGRALARELL-EQGHEVTLLVRNTKRLSKEDQEPVAV-VEGDLRDLDSLSD-- 58

Query: 91  TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYV 150
             ++ V  +  +  A +   D    CE +     N L A   +   +KH    + +  Y 
Sbjct: 59  -AVQGVDVVIHLAGAPRDTRDF---CEVDVEGTRNVLEAA--KEAGVKHFIFISSLGAY- 111

Query: 151 SLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRS 210
                     +    E  P  S         E +L+E     + +++ RPG++ G   R+
Sbjct: 112 --------GDLHEETEPSPS-SPYLAVKAKTEAVLREAS---LPYTIVRPGVIYGDLARA 159

Query: 211 LYN 213
           + N
Sbjct: 160 IAN 162

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 28/179 (15%)

Query: 32  VIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT 91
            + G TG  G+ L + L++    +V  ++R P      +     +  DL +  D+     
Sbjct: 2   AVIGATGKTGRRLVKELLA-RGHQVTALSRNPS--KAPAPGVTPVQKDLFDLADLAE--- 55

Query: 92  LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVS 151
            L  V  +     A    SD  K            L     RA   + V         VS
Sbjct: 56  ALAGVDAVVDAFGARPDDSDGVK-----------HLLDAAARAGVRRIVV--------VS 96

Query: 152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRS 210
             GL  ++   F  ++ P            E+LL+      + W++ RPG L      +
Sbjct: 97  AAGLYRDEPGTFRLDDAPLFPPYARAKAAAEELLRAS---GLDWTIVRPGALFDEEGET 152

Length = 182

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 13/115 (11%)

Query: 32  VIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT 91
           ++ G  G +G  L  RL++ A   V G+ R  +      S   F+  DL +   +     
Sbjct: 4   LVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAK 62

Query: 92  LLEDV------THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV 140
            + D             + AS  A  +    + N     N L A   RA  +K  
Sbjct: 63  GVPDAVIHLAAQSSVPDSNASDPAEFL----DVNVDGTLNLLEAA--RAAGVKRF 111

Length = 314

>gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE--------ITAIQSSSYCFISCDLL 81
           A+I G+TG  G  LA  L+    ++V+GI R+             I          DL 
Sbjct: 1  RALITGITGQDGSYLAEFLLE-KGYEVHGIVRRSSSFNTDRIDHLYINKDRITLHYGDLT 59

Query: 82 NPLDIKR 88
          +   ++R
Sbjct: 60 DSSSLRR 66

GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|187560 cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 31 AVIFGVTGLVGKELARRLISTANW-KVYGIARKP 63
          A++ G TGLVGK L R L+ +  + KV  I R+ 
Sbjct: 3  ALVLGATGLVGKHLLRELLKSPYYSKVTAIVRRK 36

Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 214

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 32  VIFGVTGLVGKELARRLISTANWKVYGIARKPE-ITAIQSSSYCFISCDLLNPLDIKRKL 90
           ++ G TG VG+ + R L+    ++V  + R P     ++++    +  DL +   +    
Sbjct: 3   LVVGATGKVGRHVVRELLDR-GYQVRALVRDPSQAEKLEAAGAEVVVGDLTDAESLAA-- 59

Query: 91  TLLEDVTHIFWVT 103
             LE +  +    
Sbjct: 60  -ALEGIDAVISAA 71

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	100.0
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	100.0
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.98
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.98
PLN02427	386	UDP-apiose/xylose synthase	99.97
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.97
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.97
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.97
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.97
PLN02572	442	UDP-sulfoquinovose synthase	99.96
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.96
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.96
PLN02260	668	probable rhamnose biosynthetic enzyme	99.96
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.96
PLN02206	442	UDP-glucuronate decarboxylase	99.96
PLN02653	340	GDP-mannose 4,6-dehydratase	99.96
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.96
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.96
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.96
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.96
PLN02240	352	UDP-glucose 4-epimerase	99.96
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.96
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.96
PLN02214	342	cinnamoyl-CoA reductase	99.96
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.95
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.95
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.95
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.95
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.95
PLN00198	338	anthocyanidin reductase; Provisional	99.95
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.95
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.95
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.95
PLN02650	351	dihydroflavonol-4-reductase	99.95
CHL00194	317	ycf39 Ycf39; Provisional	99.95
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.94
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.94
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.94
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.94
PLN02686	367	cinnamoyl-CoA reductase	99.94
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.94
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.94
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.94
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.94
PRK07201	657	short chain dehydrogenase; Provisional	99.94
PLN02583	297	cinnamoyl-CoA reductase	99.93
PLN02996	491	fatty acyl-CoA reductase	99.93
PLN00016	378	RNA-binding protein; Provisional	99.93
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.93
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.93
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.93
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.92
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.92
PLN02778	298	3,5-epimerase/4-reductase	99.91
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.91
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.89
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.88
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.88
PLN02503	605	fatty acyl-CoA reductase 2	99.88
PRK05865	854	hypothetical protein; Provisional	99.88
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.87
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.86
PRK12320	699	hypothetical protein; Provisional	99.85
PLN02260	668	probable rhamnose biosynthetic enzyme	99.85
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.83
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.82
PRK06482	276	short chain dehydrogenase; Provisional	99.81
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.8
PRK09135	249	pteridine reductase; Provisional	99.8
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.8
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.79
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.79
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.78
PRK08263	275	short chain dehydrogenase; Provisional	99.78
PLN03209	576	translocon at the inner envelope of chloroplast su	99.77
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.77
PRK05875	276	short chain dehydrogenase; Provisional	99.75
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.74
PRK07074	257	short chain dehydrogenase; Provisional	99.72
PRK07806	248	short chain dehydrogenase; Provisional	99.72
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.72
PRK07067	257	sorbitol dehydrogenase; Provisional	99.7
PRK07774	250	short chain dehydrogenase; Provisional	99.7
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.7
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.7
PRK12828	239	short chain dehydrogenase; Provisional	99.7
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.7
PRK06914	280	short chain dehydrogenase; Provisional	99.69
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.69
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.69
PRK06128	300	oxidoreductase; Provisional	99.69
PRK12829	264	short chain dehydrogenase; Provisional	99.69
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.69
PRK06180	277	short chain dehydrogenase; Provisional	99.69
PRK09186	256	flagellin modification protein A; Provisional	99.69
PRK12746	254	short chain dehydrogenase; Provisional	99.68
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.68
PRK09134	258	short chain dehydrogenase; Provisional	99.68
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.67
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.67
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.67
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.66
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.65
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.65
PRK05717	255	oxidoreductase; Validated	99.65
PRK07890	258	short chain dehydrogenase; Provisional	99.65
PRK07060	245	short chain dehydrogenase; Provisional	99.65
PRK06179	270	short chain dehydrogenase; Provisional	99.65
PRK07577	234	short chain dehydrogenase; Provisional	99.65
PRK07775	274	short chain dehydrogenase; Provisional	99.64
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.64
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.64
PRK06182	273	short chain dehydrogenase; Validated	99.64
PRK06523	260	short chain dehydrogenase; Provisional	99.64
PRK06138	252	short chain dehydrogenase; Provisional	99.64
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.64
PLN02253	280	xanthoxin dehydrogenase	99.63
PRK06123	248	short chain dehydrogenase; Provisional	99.63
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.63
PRK12827	249	short chain dehydrogenase; Provisional	99.63
PRK07856	252	short chain dehydrogenase; Provisional	99.63
PRK05876	275	short chain dehydrogenase; Provisional	99.63
PRK07985	294	oxidoreductase; Provisional	99.62
PRK08219	227	short chain dehydrogenase; Provisional	99.61
PRK10538	248	malonic semialdehyde reductase; Provisional	99.61
PRK06701	290	short chain dehydrogenase; Provisional	99.61
COG2910	211	Putative NADH-flavin reductase [General function p	99.6
PRK06500	249	short chain dehydrogenase; Provisional	99.6
PRK06194	287	hypothetical protein; Provisional	99.6
PRK08628	258	short chain dehydrogenase; Provisional	99.6
PRK06841	255	short chain dehydrogenase; Provisional	99.6
PRK12939	250	short chain dehydrogenase; Provisional	99.6
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.6
PRK06398	258	aldose dehydrogenase; Validated	99.59
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.59
PRK08324	681	short chain dehydrogenase; Validated	99.59
PRK12743	256	oxidoreductase; Provisional	99.59
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.59
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.58
PRK07326	237	short chain dehydrogenase; Provisional	99.58
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.58
PRK06181	263	short chain dehydrogenase; Provisional	99.58
PRK12744	257	short chain dehydrogenase; Provisional	99.58
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.57
PRK08265	261	short chain dehydrogenase; Provisional	99.57
PRK12937	245	short chain dehydrogenase; Provisional	99.57
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.57
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.57
PRK12742	237	oxidoreductase; Provisional	99.57
PRK07814	263	short chain dehydrogenase; Provisional	99.56
PRK08017	256	oxidoreductase; Provisional	99.56
PRK08643	256	acetoin reductase; Validated	99.56
PRK06949	258	short chain dehydrogenase; Provisional	99.56
PRK08264	238	short chain dehydrogenase; Validated	99.56
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.56
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.56
PRK05993	277	short chain dehydrogenase; Provisional	99.56
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.56
PRK07024	257	short chain dehydrogenase; Provisional	99.56
PRK09291	257	short chain dehydrogenase; Provisional	99.56
PRK07454	241	short chain dehydrogenase; Provisional	99.55
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.55
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.55
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.55
PRK07063	260	short chain dehydrogenase; Provisional	99.55
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.55
PRK12747	252	short chain dehydrogenase; Provisional	99.55
PRK07478	254	short chain dehydrogenase; Provisional	99.54
PRK06057	255	short chain dehydrogenase; Provisional	99.54
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.54
PRK06101	240	short chain dehydrogenase; Provisional	99.54
PRK06483	236	dihydromonapterin reductase; Provisional	99.54
PRK07825	273	short chain dehydrogenase; Provisional	99.54
PRK07035	252	short chain dehydrogenase; Provisional	99.54
PRK06114	254	short chain dehydrogenase; Provisional	99.53
PRK06196	315	oxidoreductase; Provisional	99.53
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.53
PRK06172	253	short chain dehydrogenase; Provisional	99.53
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.53
PRK05650	270	short chain dehydrogenase; Provisional	99.53
PRK09242	257	tropinone reductase; Provisional	99.53
PRK08267	260	short chain dehydrogenase; Provisional	99.53
PRK07677	252	short chain dehydrogenase; Provisional	99.52
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.52
PRK05693	274	short chain dehydrogenase; Provisional	99.52
PRK07576	264	short chain dehydrogenase; Provisional	99.51
PRK08251	248	short chain dehydrogenase; Provisional	99.51
PRK07109	334	short chain dehydrogenase; Provisional	99.51
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.51
PRK06198	260	short chain dehydrogenase; Provisional	99.51
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.51
PRK05867	253	short chain dehydrogenase; Provisional	99.51
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.51
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.5
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.49
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.49
PRK08589	272	short chain dehydrogenase; Validated	99.49
PRK06197	306	short chain dehydrogenase; Provisional	99.49
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.49
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.48
PRK07904	253	short chain dehydrogenase; Provisional	99.48
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.48
PRK06139	330	short chain dehydrogenase; Provisional	99.48
PRK08339	263	short chain dehydrogenase; Provisional	99.47
PRK08226	263	short chain dehydrogenase; Provisional	99.47
PRK05854	313	short chain dehydrogenase; Provisional	99.47
PRK09072	263	short chain dehydrogenase; Provisional	99.47
PRK07041	230	short chain dehydrogenase; Provisional	99.47
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.47
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.46
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.46
PRK05866	293	short chain dehydrogenase; Provisional	99.46
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.45
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.45
PRK07102	243	short chain dehydrogenase; Provisional	99.45
PRK07062	265	short chain dehydrogenase; Provisional	99.45
PRK06484	520	short chain dehydrogenase; Validated	99.44
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.44
PRK07069	251	short chain dehydrogenase; Validated	99.44
PRK05872	296	short chain dehydrogenase; Provisional	99.43
PRK06940	275	short chain dehydrogenase; Provisional	99.42
PRK07831	262	short chain dehydrogenase; Provisional	99.42
PRK08177	225	short chain dehydrogenase; Provisional	99.42
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.41
PRK07023	243	short chain dehydrogenase; Provisional	99.41
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.41
PRK06924	251	short chain dehydrogenase; Provisional	99.4
PRK08703	239	short chain dehydrogenase; Provisional	99.38
PRK06953	222	short chain dehydrogenase; Provisional	99.38
PRK08278	273	short chain dehydrogenase; Provisional	99.37
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.36
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.36
PRK07578	199	short chain dehydrogenase; Provisional	99.36
PRK07832	272	short chain dehydrogenase; Provisional	99.34
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.34
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.34
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.34
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.33
PRK07201	657	short chain dehydrogenase; Provisional	99.33
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.32
PRK05855	582	short chain dehydrogenase; Validated	99.32
PRK07791	286	short chain dehydrogenase; Provisional	99.32
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.32
PRK05884	223	short chain dehydrogenase; Provisional	99.32
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.31
PRK06125	259	short chain dehydrogenase; Provisional	99.31
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.31
KOG2774	366	consensus NAD dependent epimerase [General functio	99.31
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	99.31
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.3
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.3
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.3
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.3
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.3
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.29
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.26
PRK06484	520	short chain dehydrogenase; Validated	99.26
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.25
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.25
PRK12367	245	short chain dehydrogenase; Provisional	99.25
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.23
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.22
PLN02780	320	ketoreductase/ oxidoreductase	99.22
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.21
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.17
PRK08862	227	short chain dehydrogenase; Provisional	99.12
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.11
PRK08303	305	short chain dehydrogenase; Provisional	99.08
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.08
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.07
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.06
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.01
PRK05599	246	hypothetical protein; Provisional	99.01
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	98.99
PLN00015	308	protochlorophyllide reductase	98.97
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	98.96
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	98.9
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	98.9
KOG1611	249	consensus Predicted short chain-type dehydrogenase	98.87
KOG0725	270	consensus Reductases with broad range of substrate	98.86
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	98.82
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	98.81
KOG1208	314	consensus Dehydrogenases with different specificit	98.79
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	98.78
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	98.77
COG1028	251	FabG Dehydrogenases with different specificities (	98.75
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	98.74
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.68
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	98.65
KOG4288	283	consensus Predicted oxidoreductase [General functi	98.62
PRK08309	177	short chain dehydrogenase; Provisional	98.62
PTZ00325	321	malate dehydrogenase; Provisional	98.59
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	98.53
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.53
PLN00106	323	malate dehydrogenase	98.52
PRK06720	169	hypothetical protein; Provisional	98.5
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	98.46
PRK09620	229	hypothetical protein; Provisional	98.46
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.38
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	98.35
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	98.34
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.25
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	98.25
PRK05086	312	malate dehydrogenase; Provisional	98.23
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.21
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.19
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.16
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.1
PRK14982	340	acyl-ACP reductase; Provisional	97.96
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	97.82
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.78
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.67
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.67
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.53
KOG2733	423	consensus Uncharacterized membrane protein [Functi	97.5
PRK05442	326	malate dehydrogenase; Provisional	97.48
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.48
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.44
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.42
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.41
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	97.41
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.34
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.34
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.32
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.27
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	97.25
PRK09496	453	trkA potassium transporter peripheral membrane com	97.25
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.22
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	97.2
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.11
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	97.07
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.06
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.04
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.02
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.01
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	96.95
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.93
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.84
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	96.84
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.81
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.8
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	96.79
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	96.78
PTZ00117	319	malate dehydrogenase; Provisional	96.76
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	96.72
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.71
PRK06223	307	malate dehydrogenase; Reviewed	96.71
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.65
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.63
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.61
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.56
PRK04148	134	hypothetical protein; Provisional	96.56
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.51
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	96.49
PLN02602	350	lactate dehydrogenase	96.48
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.46
PRK09496	453	trkA potassium transporter peripheral membrane com	96.36
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.36
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.35
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.34
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.28
PRK10669	558	putative cation:proton antiport protein; Provision	96.27
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.25
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.24
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.24
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.23
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.23
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.22
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.17
COG3268	382	Uncharacterized conserved protein [Function unknow	96.11
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.09
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.08
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.07
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.07
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	96.05
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.99
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.99
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.86
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.82
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.78
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.73
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.64
PLN02383	344	aspartate semialdehyde dehydrogenase	95.59
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.59
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	95.57
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.56
PRK13243	333	glyoxylate reductase; Reviewed	95.55
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.53
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.52
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.49
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.49
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.49
PLN02928	347	oxidoreductase family protein	95.48
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.42
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.42
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	95.41
PRK08818	370	prephenate dehydrogenase; Provisional	95.4
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.38
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.37
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.34
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.33
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.32
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.31
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.3
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.29
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.23
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.21
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.21
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	95.19
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.18
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.17
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	95.11
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.05
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.98
PRK12480	330	D-lactate dehydrogenase; Provisional	94.94
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.88
PRK10537	393	voltage-gated potassium channel; Provisional	94.87
PRK06487	317	glycerate dehydrogenase; Provisional	94.83
PRK06436	303	glycerate dehydrogenase; Provisional	94.83
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.81
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	94.8
PRK07574	385	formate dehydrogenase; Provisional	94.79
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.75
PRK08655	437	prephenate dehydrogenase; Provisional	94.74
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.71
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.71
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	94.63
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	94.62
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.62
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.6
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	94.59
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.56
PRK06849	389	hypothetical protein; Provisional	94.5
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.48
PLN00203	519	glutamyl-tRNA reductase	94.47
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	94.44
PRK06932	314	glycerate dehydrogenase; Provisional	94.44
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.44
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.38
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.35
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.33
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	94.29
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	94.26
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.26
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.26
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.2
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.18
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.16
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.14
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	94.14
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.13
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.13
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.12
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.08
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	94.08
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.07
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.07
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.07
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.06
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	94.0
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.95
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	93.94
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.89
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.87
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.86
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.84
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	93.83
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.83
PLN03139	386	formate dehydrogenase; Provisional	93.83
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.78
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.78
PRK08605	332	D-lactate dehydrogenase; Validated	93.77
PRK05479	330	ketol-acid reductoisomerase; Provisional	93.68
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.63
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.6
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	93.59
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.58
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.55
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.48
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.47
PLN02494	477	adenosylhomocysteinase	93.47
KOG4288	283	consensus Predicted oxidoreductase [General functi	93.47
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	93.45
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.45
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.45
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.39
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.38
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.3
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	93.29
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.28
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.28
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	93.27
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.23
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.23
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.21
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.19
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.17
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.17
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.09

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.2e-33  Score=230.85  Aligned_cols=257  Identities=16%  Similarity=0.137  Sum_probs=198.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCC--eEEEEecCCCHHHHHHHHhccC--ceeEEeeccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSS--YCFISCDLLNPLDIKRKLTLLE--DVTHIFWVTW  104 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~--~~~~~~D~~~~~~l~~~~~~~~--~V~~~~~~~~  104 (303)
                      ++||||||+||||++.+.+|+ +.||+|+++++-.......-..  +.++++|+.|.+.+.++|+...  .|+|.|+...
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll-~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~   79 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLL-KTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASIS   79 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHH-HCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccc
Confidence            489999999999999999999 7999999999865443211122  6899999999999999998765  5999999988


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ..++-..|.++++.|+.++.+|+++|++++  +..+++.|++.+||.+       ...|+.|+.|..|.+|   |+.+|+
T Consensus        80 VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g--v~~~vFSStAavYG~p-------~~~PI~E~~~~~p~NP---YG~sKl  147 (329)
T COG1087          80 VGESVQNPLKYYDNNVVGTLNLIEAMLQTG--VKKFIFSSTAAVYGEP-------TTSPISETSPLAPINP---YGRSKL  147 (329)
T ss_pred             cchhhhCHHHHHhhchHhHHHHHHHHHHhC--CCEEEEecchhhcCCC-------CCcccCCCCCCCCCCc---chhHHH
Confidence            899989999999999999999999999984  5667776777788766       3568999999999999   999999


Q ss_pred             HHHH-----hcCC-cceEEecCCceeecCCC-------CccchhhHHHHHHHHhhhCCCceeeCCch-hhh-hhhcccCc
Q 042242          185 LKEK-----LAGK-VAWSVHRPGLLLGSSHR-------SLYNFLGCLCVYGAVCKHLNLPFVFGGTR-EIW-EEYCLDGS  249 (303)
Q Consensus       185 ~~e~-----~~~~-~~~~ilRp~~v~G~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~~~  249 (303)
                      +.|.     .... ++++++|.+++.|..+.       .+.+.+.++....++.+  ...+.+.|+. ... ...+.|++
T Consensus       148 m~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~--r~~l~ifG~DY~T~DGT~iRDYI  225 (329)
T COG1087         148 MSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGK--RDKLFIFGDDYDTKDGTCIRDYI  225 (329)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcC--CceeEEeCCCCCCCCCCeeeeee
Confidence            8882     2323 99999999999996543       12222333333333332  2223333322 111 26789999


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      |+.|+|.+++.+++.-...+ ...+||++.|.-.|..|+++.+.++.|++.|
T Consensus       226 HV~DLA~aH~~Al~~L~~~g-~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip  276 (329)
T COG1087         226 HVDDLADAHVLALKYLKEGG-SNNIFNLGSGNGFSVLEVIEAAKKVTGRDIP  276 (329)
T ss_pred             ehhHHHHHHHHHHHHHHhCC-ceeEEEccCCCceeHHHHHHHHHHHhCCcCc
Confidence            99999999999876544322 1158999999999999999999999999887

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=100.00  E-value=3.8e-32  Score=239.25  Aligned_cols=253  Identities=19%  Similarity=0.127  Sum_probs=181.9

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------------ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------------IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      ...++|+|||||||||||++|+++|+ +.|++|++++|......            ....+++++.+|+.|.+.+..+++
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~   89 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELL-FLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK   89 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence            34456899999999999999999999 67999999998653211            001357889999999999999999


Q ss_pred             ccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           92 LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      ++|.|+|+|+......+..++.+.+++|+.++.+++++|++.+  +.++++.|+..+|+...       ..+..|+++..
T Consensus        90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~--~~~~v~~SS~~vyg~~~-------~~~~~e~~~~~  160 (348)
T PRK15181         90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH--VSSFTYAASSSTYGDHP-------DLPKIEERIGR  160 (348)
T ss_pred             CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEeechHhhCCCC-------CCCCCCCCCCC
Confidence            9999999988654444444455689999999999999999862  44666666666775432       34456666655


Q ss_pred             CCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCcc---chhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          172 SKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLY---NFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      |.++   |+.+|...|.     .... ++++++||+++||++.....   .++..+.  ..+..  +.++...|+.    
T Consensus       161 p~~~---Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~--~~~~~--~~~i~~~g~g----  229 (348)
T PRK15181        161 PLSP---YAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWI--LSLLK--DEPIYINGDG----  229 (348)
T ss_pred             CCCh---hhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHH--HHHHc--CCCcEEeCCC----
Confidence            6666   9988887773     2222 99999999999997643221   1112211  11222  4454544433    


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      .+..++++++|+|++++.++..+... ..+++|||++++.+|++|+++.+.+.++.
T Consensus       230 ~~~rd~i~v~D~a~a~~~~~~~~~~~-~~~~~yni~~g~~~s~~e~~~~i~~~~~~  284 (348)
T PRK15181        230 STSRDFCYIENVIQANLLSATTNDLA-SKNKVYNVAVGDRTSLNELYYLIRDGLNL  284 (348)
T ss_pred             CceEeeEEHHHHHHHHHHHHhccccc-CCCCEEEecCCCcEeHHHHHHHHHHHhCc
Confidence            45568999999999988877543211 12479999999999999999999998874

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.98  E-value=9.5e-31  Score=212.81  Aligned_cols=251  Identities=16%  Similarity=0.101  Sum_probs=190.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcc-----c-c-ccCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEI-----T-A-IQSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~-----~-~-~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      +++|||||+||||++++++++.+. .++|+.++.-.-.     . . ...+++.++++|++|.+.+.++++.  .|.|+|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            579999999999999999999433 3558888863211     1 1 2346899999999999999999996  567999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      .|+-++.+.+-..+..++++|+.|+.+||+++++.... .++..+|+..+||+...     ....++|++|..|++|   
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~-frf~HISTDEVYG~l~~-----~~~~FtE~tp~~PsSP---  151 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK-FRFHHISTDEVYGDLGL-----DDDAFTETTPYNPSSP---  151 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhccc-ceEEEeccccccccccC-----CCCCcccCCCCCCCCC---
Confidence            99999999988888889999999999999999998542 23333444557755432     2336899999999999   


Q ss_pred             HHHHHHHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHH
Q 042242          179 YVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSR  252 (303)
Q Consensus       179 y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  252 (303)
                      |+.+|....     +.+.. ++++|.|+++-|||  .....   ++-....+..-.++++.+.|++    .+..++.+++
T Consensus       152 YSASKAasD~lVray~~TYglp~~ItrcSNNYGP--yqfpE---KlIP~~I~nal~g~~lpvYGdG----~~iRDWl~Ve  222 (340)
T COG1088         152 YSASKAASDLLVRAYVRTYGLPATITRCSNNYGP--YQFPE---KLIPLMIINALLGKPLPVYGDG----LQIRDWLYVE  222 (340)
T ss_pred             cchhhhhHHHHHHHHHHHcCCceEEecCCCCcCC--CcCch---hhhHHHHHHHHcCCCCceecCC----cceeeeEEeH
Confidence            888777655     22323 99999999999995  43222   2222222222336666666666    5677888888


Q ss_pred             HHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          253 LVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       253 d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      |-++++-.++.....    |++|||+++...+..|+++.|.+.+|++.+
T Consensus       223 Dh~~ai~~Vl~kg~~----GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~  267 (340)
T COG1088         223 DHCRAIDLVLTKGKI----GETYNIGGGNERTNLEVVKTICELLGKDKP  267 (340)
T ss_pred             hHHHHHHHHHhcCcC----CceEEeCCCccchHHHHHHHHHHHhCcccc
Confidence            889988888777643    599999999999999999999999998776

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.98  E-value=2.2e-30  Score=220.01  Aligned_cols=251  Identities=20%  Similarity=0.205  Sum_probs=174.5

Q ss_pred             EEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc---ccCCC-eEEEEecCCCHHHHHHHHhccCceeEEeecccc
Q 042242           32 VIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA---IQSSS-YCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        32 lVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~---~~~~~-~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      |||||+||||++|+++|+ +.|  ++|++++|.+....   ....+ .+++++|++|.+++.++++++|.|+|+|.....
T Consensus         1 LVTGgsGflG~~iv~~Ll-~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~   79 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLL-ERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPP   79 (280)
T ss_pred             CEEcCCcHHHHHHHHHHH-HCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccc
Confidence            699999999999999999 577  78999998776533   12223 348999999999999999999999999876433


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLL  185 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~  185 (303)
                      .. .....+.+++|+.|+.+++++|++.  .+++++++|+..++.....  +. .....+|+.+.. ..+...|+.+|.+
T Consensus        80 ~~-~~~~~~~~~vNV~GT~nvl~aa~~~--~VkrlVytSS~~vv~~~~~--~~-~~~~~dE~~~~~-~~~~~~Y~~SK~~  152 (280)
T PF01073_consen   80 WG-DYPPEEYYKVNVDGTRNVLEAARKA--GVKRLVYTSSISVVFDNYK--GD-PIINGDEDTPYP-SSPLDPYAESKAL  152 (280)
T ss_pred             cC-cccHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEcCcceeEeccC--CC-CcccCCcCCccc-ccccCchHHHHHH
Confidence            32 2223348999999999999999986  4566666666556543111  00 011124544432 2233449998888


Q ss_pred             HHH----hcC------C-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHH
Q 042242          186 KEK----LAG------K-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLV  254 (303)
Q Consensus       186 ~e~----~~~------~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  254 (303)
                      +|.    +.+      . +.++++||+.|||++.....+.+...     ...  +......|..    ....++++++++
T Consensus       153 AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~-----~~~--g~~~~~~g~~----~~~~~~vyV~Nv  221 (280)
T PF01073_consen  153 AEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKM-----VRS--GLFLFQIGDG----NNLFDFVYVENV  221 (280)
T ss_pred             HHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHH-----HHh--cccceeecCC----CceECcEeHHHH
Confidence            883    122      3 89999999999997654332222221     111  2122222222    566789999999


Q ss_pred             HHHHHHHhc---Cc-CCcCCCCceEEeecCCCcc-HHhhHHHHHHHhcccCC
Q 042242          255 AEQHIWVAT---ND-DISSTKGQAFNAINGPRFT-WKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       255 a~a~~~~~~---~~-~~~~~~g~~yni~~~~~~s-~~e~~~~i~~~~g~~~~  301 (303)
                      |.+++.++.   .+ ......|+.|+|++++++. +.|++..+.+.+|.+.|
T Consensus       222 A~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~  273 (280)
T PF01073_consen  222 AHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPP  273 (280)
T ss_pred             HHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCC
Confidence            999988754   22 0111457999999999999 99999999999999987

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02427 UDP-apiose/xylose synthase

Probab=99.97  E-value=1.9e-29  Score=225.29  Aligned_cols=260  Identities=12%  Similarity=0.101  Sum_probs=172.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +.|+|||||||||||++|+++|++.+|++|++++|+..+...        ...+++++.+|+.|.+.+.++++++|.|||
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH   92 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN   92 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence            446899999999999999999994336999999987543211        124689999999999999999999999999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCc---------CcCCC
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFY---------DEECP  169 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~---------~e~~~  169 (303)
                      +|+.........++.+.+..|+.++.+++++|++.++   ++++.|+..+|+.....+-. ...|.         .|+.+
T Consensus        93 lAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~---r~v~~SS~~vYg~~~~~~~~-e~~p~~~~~~~~~~~e~~~  168 (386)
T PLN02427         93 LAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNK---RLIHFSTCEVYGKTIGSFLP-KDHPLRQDPAFYVLKEDES  168 (386)
T ss_pred             cccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCC---EEEEEeeeeeeCCCcCCCCC-ccccccccccccccccccc
Confidence            9875433222233334678899999999999987653   45555555578643211100 01111         12211


Q ss_pred             CC---C-CCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCc------cchhhH-HHHHHH-HhhhCCCc
Q 042242          170 RV---S-KSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSL------YNFLGC-LCVYGA-VCKHLNLP  231 (303)
Q Consensus       170 ~~---p-~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~------~~~~~~-~~~~~~-~~~~~~~~  231 (303)
                      ..   | ..|.+.|+.+|.+.|.     .... ++++++||++|||++....      ...... +..+.. +.  .+.+
T Consensus       169 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~  246 (386)
T PLN02427        169 PCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RREP  246 (386)
T ss_pred             ccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHh--cCCC
Confidence            10   0 1122348988887772     2222 9999999999999753210      001111 111111 22  2445


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC-CCccHHhhHHHHHHHhcc
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING-PRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~-~~~s~~e~~~~i~~~~g~  298 (303)
                      +.+.|+.    .+..++++++|+|++++.++.++...  .+++||++++ +.+|+.|+++.+.+.+|.
T Consensus       247 ~~~~g~g----~~~r~~i~V~Dva~ai~~al~~~~~~--~g~~yni~~~~~~~s~~el~~~i~~~~g~  308 (386)
T PLN02427        247 LKLVDGG----QSQRTFVYIKDAIEAVLLMIENPARA--NGHIFNVGNPNNEVTVRQLAEMMTEVYAK  308 (386)
T ss_pred             eEEECCC----CceECcEeHHHHHHHHHHHHhCcccc--cCceEEeCCCCCCccHHHHHHHHHHHhcc
Confidence            4444433    45568999999999999988765321  2479999997 589999999999999885

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.97  E-value=2.2e-29  Score=221.89  Aligned_cols=254  Identities=15%  Similarity=0.238  Sum_probs=174.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCC-CHHHHHHHHhccCceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLL-NPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~-~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      |+|||||||||||++|+++|++..||+|++++|+..+..  ...++++++.+|+. +.+.+.++++++|.|+|+++....
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~~~~   81 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAIATP   81 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcccCCh
Confidence            589999999999999999998445799999998754322  12346889999997 777888889999999999876543


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC---C-CCccchHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV---S-KSNNFYYVL  181 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~---p-~~~~~~y~~  181 (303)
                      .....++...+++|+.++.+++++|++..   .++++.|+..+|+...       ..++.|+++..   | ..|.+.|+.
T Consensus        82 ~~~~~~p~~~~~~n~~~~~~ll~aa~~~~---~~~v~~SS~~vyg~~~-------~~~~~ee~~~~~~~~~~~p~~~Y~~  151 (347)
T PRK11908         82 ATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPSTSEVYGMCP-------DEEFDPEASPLVYGPINKPRWIYAC  151 (347)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHHHHHHhcC---CeEEEEecceeeccCC-------CcCcCccccccccCcCCCccchHHH
Confidence            33334444578999999999999999764   3555555555775431       22455554321   1 123344999


Q ss_pred             HHHHHHH-----hcCC-cceEEecCCceeecCCCCcc---c-hhhHHHH-HHHHhhhCCCceeeCCchhhhhhhcccCcc
Q 042242          182 EDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLY---N-FLGCLCV-YGAVCKHLNLPFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       182 ~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~---~-~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (303)
                      +|...|.     .... ++++++||+.+||++.....   . ....+.. ...+..  +.++.+.+..    .+..++++
T Consensus       152 sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~g----~~~r~~i~  225 (347)
T PRK11908        152 SKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVR--GEPISLVDGG----SQKRAFTD  225 (347)
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhC--CCceEEecCC----ceeecccc
Confidence            8887762     2222 99999999999997643110   0 0001111 111222  4454444332    45568999


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeecC-CCccHHhhHHHHHHHhccc
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAING-PRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~~-~~~s~~e~~~~i~~~~g~~  299 (303)
                      ++|+|++++.++..+... ..|++||++++ ..+|++|+++.|.+.+|..
T Consensus       226 v~D~a~a~~~~~~~~~~~-~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~  274 (347)
T PRK11908        226 IDDGIDALMKIIENKDGV-ASGKIYNIGNPKNNHSVRELANKMLELAAEY  274 (347)
T ss_pred             HHHHHHHHHHHHhCcccc-CCCCeEEeCCCCCCcCHHHHHHHHHHHhcCc
Confidence            999999999988775320 12479999987 4799999999999999853

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.97  E-value=7.5e-29  Score=218.19  Aligned_cols=247  Identities=14%  Similarity=0.095  Sum_probs=177.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc---ccc----------CCCeEEEEecCCCHHHHHHHHhcc--
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT---AIQ----------SSSYCFISCDLLNPLDIKRKLTLL--   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~~~----------~~~~~~~~~D~~~~~~l~~~~~~~--   93 (303)
                      |+||||||+||||++|+++|+ ..|++|++++|++...   ...          ..+++++.+|++|.+.+.++++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLL-EKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHH-HCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence            589999999999999999999 6899999999976421   000          235889999999999999999965  


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      |.|+|+|+......+...+...+++|+.++.+++++|++.+ .+..++++.|+..+|+...       ..+..|+.+..|
T Consensus        80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~-------~~~~~E~~~~~p  152 (343)
T TIGR01472        80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQ-------EIPQNETTPFYP  152 (343)
T ss_pred             CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCC-------CCCCCCCCCCCC
Confidence            67999987654433333344577889999999999999863 2234666666666786432       335778887777


Q ss_pred             CCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhh-HHHHHH-HHhhhCCC-ceeeCCchhhhhh
Q 042242          173 KSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLG-CLCVYG-AVCKHLNL-PFVFGGTREIWEE  243 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~g~~~~~~~  243 (303)
                      .++   |+.+|...|.     .+.. +++++.|+.++||++...  ++.. .+.... .+..  +. +..+.|+.    .
T Consensus       153 ~~~---Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~g~g----~  221 (343)
T TIGR01472       153 RSP---YAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGE--NFVTRKITRAAAKIKL--GLQEKLYLGNL----D  221 (343)
T ss_pred             CCh---hHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCc--cccchHHHHHHHHHHc--CCCCceeeCCC----c
Confidence            777   9998888772     2222 788899999999975332  1111 111111 1222  22 22333433    4


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      +..++++++|+|++++.++..+.  +   +.|||++++.+|++|+++.+++.+|++
T Consensus       222 ~~rd~i~V~D~a~a~~~~~~~~~--~---~~yni~~g~~~s~~e~~~~i~~~~g~~  272 (343)
T TIGR01472       222 AKRDWGHAKDYVEAMWLMLQQDK--P---DDYVIATGETHSVREFVEVSFEYIGKT  272 (343)
T ss_pred             cccCceeHHHHHHHHHHHHhcCC--C---ccEEecCCCceeHHHHHHHHHHHcCCC
Confidence            56788999999999998887642  1   579999999999999999999999965

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.97  E-value=9e-29  Score=218.77  Aligned_cols=249  Identities=16%  Similarity=0.116  Sum_probs=173.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEE-EEecCCcccc---c----cCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVY-GIARKPEITA---I----QSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~-~~~r~~~~~~---~----~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      ++|||||||||||+++++.|+ +.|++|+ +++|......   .    ...+++++.+|+.|.+++.+++++  +|.|+|
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~-~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYII-NETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-HcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            689999999999999999999 6788755 4444322111   0    123577889999999999999985  677999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-------cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-------AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      +++......+...+.+.+++|+.++.+++++|.+.       .....+++.+|+..+|+....     ...+++|+.+..
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~-----~~~~~~E~~~~~  155 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHS-----TDDFFTETTPYA  155 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCC-----CCCCcCCCCCCC
Confidence            98765443333444568999999999999999863       123456666666667753211     134577887766


Q ss_pred             CCCccchHHHHHHHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhc
Q 042242          172 SKSNNFYYVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                      |.++   |+.+|...|     +.+.. ++++++||+++||++.. ...+...+  ......  +.++.+.|++    .+.
T Consensus       156 p~s~---Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~-~~~~~~~~--~~~~~~--~~~~~~~g~g----~~~  223 (355)
T PRK10217        156 PSSP---YSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHF-PEKLIPLM--ILNALA--GKPLPVYGNG----QQI  223 (355)
T ss_pred             CCCh---hHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCC-cccHHHHH--HHHHhc--CCCceEeCCC----Cee
Confidence            6666   898888766     22222 89999999999997542 11111111  111222  3444444433    456


Q ss_pred             ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          246 LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      .+++|++|+|++++.++..+. .   +++||+++++.+|++|+++.+++.+|+.
T Consensus       224 ~~~i~v~D~a~a~~~~~~~~~-~---~~~yni~~~~~~s~~~~~~~i~~~~~~~  273 (355)
T PRK10217        224 RDWLYVEDHARALYCVATTGK-V---GETYNIGGHNERKNLDVVETICELLEEL  273 (355)
T ss_pred             eCcCcHHHHHHHHHHHHhcCC-C---CCeEEeCCCCcccHHHHHHHHHHHhccc
Confidence            789999999999988887642 2   3799999999999999999999999853

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.97  E-value=1.3e-28  Score=233.12  Aligned_cols=257  Identities=15%  Similarity=0.215  Sum_probs=178.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHH-HHHHHhccCceeEEeecc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLD-IKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~-l~~~~~~~~~V~~~~~~~  103 (303)
                      .+++|||||||||||++|+++|++..||+|++++|.+....  ...++++++.+|++|... +.++++++|.|+|+|+..
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~  393 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIA  393 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECcccc
Confidence            46799999999999999999999435899999999765422  123468899999998655 577888999999998765


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC---CC-CccchH
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV---SK-SNNFYY  179 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~---p~-~~~~~y  179 (303)
                      ........+.+.+++|+.++.+++++|++.+   .++++.|+..+|+...       ..+++|+++..   |. .|.+.|
T Consensus       394 ~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~---~~~V~~SS~~vyg~~~-------~~~~~E~~~~~~~~p~~~p~s~Y  463 (660)
T PRK08125        394 TPIEYTRNPLRVFELDFEENLKIIRYCVKYN---KRIIFPSTSEVYGMCT-------DKYFDEDTSNLIVGPINKQRWIY  463 (660)
T ss_pred             CchhhccCHHHHHHhhHHHHHHHHHHHHhcC---CeEEEEcchhhcCCCC-------CCCcCccccccccCCCCCCccch
Confidence            4433333444578999999999999999875   3566666666775431       33567776531   21 233349


Q ss_pred             HHHHHHHHH-----hcCC-cceEEecCCceeecCCCCcc--ch--hhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          180 VLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLY--NF--LGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       180 ~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                      +.+|.+.|.     .+.. ++++++||+++||++.....  ..  ...+..+.. ....+.++.+.|..    .+..+++
T Consensus       464 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~-~~~~~~~i~~~g~g----~~~rd~i  538 (660)
T PRK08125        464 SVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLIL-NLVEGSPIKLVDGG----KQKRCFT  538 (660)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHH-HhcCCCCeEEeCCC----ceeecee
Confidence            998887772     2222 99999999999997643210  00  001111111 11124455444433    5667899


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCC-CccHHhhHHHHHHHhccc
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGP-RFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~-~~s~~e~~~~i~~~~g~~  299 (303)
                      |++|+|++++.++..+... ..|++||+++++ .+|++|+++.+.+.+|.+
T Consensus       539 ~v~Dva~a~~~~l~~~~~~-~~g~iyni~~~~~~~s~~el~~~i~~~~g~~  588 (660)
T PRK08125        539 DIRDGIEALFRIIENKDNR-CDGQIINIGNPDNEASIRELAEMLLASFEKH  588 (660)
T ss_pred             eHHHHHHHHHHHHhccccc-cCCeEEEcCCCCCceeHHHHHHHHHHHhccC
Confidence            9999999999888764311 124799999986 799999999999999853

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.96  E-value=5.2e-28  Score=218.29  Aligned_cols=259  Identities=16%  Similarity=0.085  Sum_probs=169.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc---ccc---------------------ccCCCeEEEEecCCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE---ITA---------------------IQSSSYCFISCDLLN   82 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~---~~~---------------------~~~~~~~~~~~D~~~   82 (303)
                      ++++||||||+||||++|+++|+ ..|++|++++|...   ...                     ....+++++.+|++|
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d  124 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLS-KRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICD  124 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHH-HCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCC
Confidence            56899999999999999999999 68999999875321   100                     001358899999999


Q ss_pred             HHHHHHHHhc--cCceeEEeecccccCCh---HHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCc
Q 042242           83 PLDIKRKLTL--LEDVTHIFWVTWASQFA---SDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPE  157 (303)
Q Consensus        83 ~~~l~~~~~~--~~~V~~~~~~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g  157 (303)
                      .+.+.+++++  +|.|+|+|+......+.   .+....+++|+.++.+++++|++.+.+ .++++.|+..+|+...... 
T Consensus       125 ~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~-~~~V~~SS~~vYG~~~~~~-  202 (442)
T PLN02572        125 FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPD-CHLVKLGTMGEYGTPNIDI-  202 (442)
T ss_pred             HHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCC-ccEEEEecceecCCCCCCC-
Confidence            9999999986  57799997553322221   222345789999999999999987421 2455555556786431100 


Q ss_pred             ccccCCcC------cCC---CCCCCCccchHHHHHHHHH-----HhcCC-cceEEecCCceeecCCCCcc----------
Q 042242          158 EKQVRFYD------EEC---PRVSKSNNFYYVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLY----------  212 (303)
Q Consensus       158 ~~~~~~~~------e~~---~~~p~~~~~~y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~----------  212 (303)
                        .+.++.      |++   +..|.++   |+.+|...|     +.... ++++++||+++||++.....          
T Consensus       203 --~E~~i~~~~~~~e~~~~~~~~P~s~---Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~  277 (442)
T PLN02572        203 --EEGYITITHNGRTDTLPYPKQASSF---YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLD  277 (442)
T ss_pred             --cccccccccccccccccCCCCCCCc---chhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccC
Confidence              111111      232   3334445   999888776     22322 99999999999997643210          


Q ss_pred             ---chhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhH
Q 042242          213 ---NFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIW  289 (303)
Q Consensus       213 ---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~  289 (303)
                         .+...+..+.. ....+.++.+.|..    .+..++++++|+|++++.++..+...+ ...+||+++ +.+|++|++
T Consensus       278 ~~~~~~~~i~~~~~-~~~~g~~i~v~g~G----~~~Rdfi~V~Dva~a~~~al~~~~~~g-~~~i~Nigs-~~~si~el~  350 (442)
T PLN02572        278 YDGVFGTALNRFCV-QAAVGHPLTVYGKG----GQTRGFLDIRDTVRCIEIAIANPAKPG-EFRVFNQFT-EQFSVNELA  350 (442)
T ss_pred             cccchhhHHHHHHH-HHhcCCCceecCCC----CEEECeEEHHHHHHHHHHHHhChhhcC-ceeEEEeCC-CceeHHHHH
Confidence               00011111111 11124555554433    456789999999999999887643221 114799976 679999999


Q ss_pred             HHHHHH---hcccC
Q 042242          290 PSIGKK---FGVKV  300 (303)
Q Consensus       290 ~~i~~~---~g~~~  300 (303)
                      +.+++.   +|++.
T Consensus       351 ~~i~~~~~~~g~~~  364 (442)
T PLN02572        351 KLVTKAGEKLGLDV  364 (442)
T ss_pred             HHHHHHHHhhCCCC
Confidence            999999   88653

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.96  E-value=6.6e-28  Score=213.62  Aligned_cols=255  Identities=15%  Similarity=0.036  Sum_probs=173.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      .+|+|||||||||||++|++.|. +.||+|++++|...... ......+++.+|++|.+.+..+++++|.|+|+++....
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~-~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~   98 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLK-AEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGG   98 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHH-hCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcccccCC
Confidence            35799999999999999999999 68999999999754211 11123577889999999998889888989999764321


Q ss_pred             c-CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC--CCCCCCccchHHHH
Q 042242          106 S-QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC--PRVSKSNNFYYVLE  182 (303)
Q Consensus       106 ~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~--~~~p~~~~~~y~~~  182 (303)
                      . .....+...+..|+.++.+++++|++..  ..++++.|+..+|+......   ...++.|++  +..|.++   |+.+
T Consensus        99 ~~~~~~~~~~~~~~N~~~t~nll~aa~~~~--vk~~V~~SS~~vYg~~~~~~---~~~~~~E~~~~p~~p~s~---Yg~s  170 (370)
T PLN02695         99 MGFIQSNHSVIMYNNTMISFNMLEAARING--VKRFFYASSACIYPEFKQLE---TNVSLKESDAWPAEPQDA---YGLE  170 (370)
T ss_pred             ccccccCchhhHHHHHHHHHHHHHHHHHhC--CCEEEEeCchhhcCCccccC---cCCCcCcccCCCCCCCCH---HHHH
Confidence            1 1111122357889999999999998763  44666666666785432100   122456654  4444455   8988


Q ss_pred             HHHHHH-----hcCC-cceEEecCCceeecCCCCcc--chhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHH
Q 042242          183 DLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLY--NFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLV  254 (303)
Q Consensus       183 k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  254 (303)
                      |...|.     .... ++++++||+++||++.....  ...........+.  .+.++.+.+..    .+..++++++|+
T Consensus       171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~g~g----~~~r~~i~v~D~  244 (370)
T PLN02695        171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALT--STDEFEMWGDG----KQTRSFTFIDEC  244 (370)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHc--CCCCeEEeCCC----CeEEeEEeHHHH
Confidence            887772     2222 99999999999997543211  1111111111121  13445554443    455678899999


Q ss_pred             HHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          255 AEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       255 a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++++++++..+.     +++||+++++.+|++|+++.+.+.+|.+.+
T Consensus       245 a~ai~~~~~~~~-----~~~~nv~~~~~~s~~el~~~i~~~~g~~~~  286 (370)
T PLN02695        245 VEGVLRLTKSDF-----REPVNIGSDEMVSMNEMAEIALSFENKKLP  286 (370)
T ss_pred             HHHHHHHHhccC-----CCceEecCCCceeHHHHHHHHHHHhCCCCC
Confidence            999988766531     268999999999999999999999997544

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.96  E-value=2.4e-28  Score=219.55  Aligned_cols=241  Identities=16%  Similarity=0.095  Sum_probs=168.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .+||||||||||||++|+++|+ +.|++|++++|......      ...++++++.+|+.+.     .+.++|.|+|+|+
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll-~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~-----~~~~~D~ViHlAa  193 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLI-GRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC  193 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccc-----cccCCCEEEECce
Confidence            4689999999999999999999 68999999998532211      1124677888888764     3567888999987


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC-----CCCCCCcc
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC-----PRVSKSNN  176 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~-----~~~p~~~~  176 (303)
                      .........++.+.+++|+.++.+++++|++.+.   ++++.|+..+|+...       ..+.+|+.     |..|.++ 
T Consensus       194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~---r~V~~SS~~VYg~~~-------~~p~~E~~~~~~~p~~p~s~-  262 (436)
T PLN02166        194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---RFLLTSTSEVYGDPL-------EHPQKETYWGNVNPIGERSC-  262 (436)
T ss_pred             eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC---EEEEECcHHHhCCCC-------CCCCCccccccCCCCCCCCc-
Confidence            6443333334556899999999999999998753   566666666886432       23455552     3333444 


Q ss_pred             chHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHH-HHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          177 FYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYG-AVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       177 ~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                        |+.+|...|.     .+.. ++++++||+++||++.......  .+..+. .+.+  +.++.+.|+.    .+..+++
T Consensus       263 --Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~--~i~~~i~~~l~--~~~i~v~g~g----~~~rdfi  332 (436)
T PLN02166        263 --YDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGR--VVSNFVAQTIR--KQPMTVYGDG----KQTRSFQ  332 (436)
T ss_pred             --hHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccc--hHHHHHHHHhc--CCCcEEeCCC----CeEEeeE
Confidence              8888887773     2222 9999999999999754311111  111111 1222  4455555543    4556788


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +++|++++++.++....     +++||+++++.+|++|+++.|++.+|++.
T Consensus       333 ~V~Dva~ai~~~~~~~~-----~giyNIgs~~~~Si~ela~~I~~~~g~~~  378 (436)
T PLN02166        333 YVSDLVDGLVALMEGEH-----VGPFNLGNPGEFTMLELAEVVKETIDSSA  378 (436)
T ss_pred             EHHHHHHHHHHHHhcCC-----CceEEeCCCCcEeHHHHHHHHHHHhCCCC
Confidence            99999999998886432     25899999999999999999999999764

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.96  E-value=8.9e-28  Score=228.42  Aligned_cols=253  Identities=14%  Similarity=0.099  Sum_probs=178.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCccc--c-----ccCCCeEEEEecCCCHHHHHHHH--hccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEIT--A-----IQSSSYCFISCDLLNPLDIKRKL--TLLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~--~-----~~~~~~~~~~~D~~~~~~l~~~~--~~~~~V   96 (303)
                      ++|+|||||||||||++|+++|++. .+++|++++|.....  .     ...++++++.+|+.|.+.+..++  .++|.|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            3579999999999999999999943 278999999853111  0     11347889999999998888776  457789


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      +|+|+......+..++.+.++.|+.++.+++++|++.+ .+.+++++|+..+|+......    ..+..|+.+..|.++ 
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~vkr~I~~SS~~vyg~~~~~~----~~~~~E~~~~~p~~~-  158 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG-QIRRFIHVSTDEVYGETDEDA----DVGNHEASQLLPTNP-  158 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEcchHHhCCCcccc----ccCccccCCCCCCCC-
Confidence            99987654443333444578999999999999998763 345677777777886542100    112356666666666 


Q ss_pred             chHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCcc
Q 042242          177 FYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       177 ~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (303)
                        |+.+|...|.     .... ++++++||++|||++... ..++..   +.... ..+.++.+.|..    .+..++++
T Consensus       159 --Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~-~~~i~~---~~~~a-~~g~~i~i~g~g----~~~r~~ih  227 (668)
T PLN02260        159 --YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP-EKLIPK---FILLA-MQGKPLPIHGDG----SNVRSYLY  227 (668)
T ss_pred             --cHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCc-ccHHHH---HHHHH-hCCCCeEEecCC----CceEeeEE
Confidence              8888777762     2222 999999999999975421 111111   11111 124455554443    45668899


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++|+|++++.++....    .+++||+++++.+|+.|+++.+++.+|++.
T Consensus       228 V~Dva~a~~~~l~~~~----~~~vyni~~~~~~s~~el~~~i~~~~g~~~  273 (668)
T PLN02260        228 CEDVAEAFEVVLHKGE----VGHVYNIGTKKERRVIDVAKDICKLFGLDP  273 (668)
T ss_pred             HHHHHHHHHHHHhcCC----CCCEEEECCCCeeEHHHHHHHHHHHhCCCC
Confidence            9999999988876542    237999999999999999999999999764

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.96  E-value=5.8e-28  Score=208.29  Aligned_cols=230  Identities=13%  Similarity=0.039  Sum_probs=159.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEeeccccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFWVTWAS  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~~~~~~  106 (303)
                      |+||||||+||||++|+++|+ ..| +|++++|...          .+.+|+.|.+.+.+++++  .|.|+|+|+.....
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~-~~g-~V~~~~~~~~----------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~   68 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALA-PLG-NLIALDVHST----------DYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVD   68 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhh-ccC-CEEEeccccc----------cccCCCCCHHHHHHHHHhcCCCEEEECCccCCcc
Confidence            479999999999999999998 567 7999988642          235899999999999985  56799998776554


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .+..++...+++|+.++.+++++|+..+.   ++++.|+..+|++.       ...|+.|+++..|.++   |+.+|...
T Consensus        69 ~~~~~~~~~~~~N~~~~~~l~~aa~~~g~---~~v~~Ss~~Vy~~~-------~~~p~~E~~~~~P~~~---Yg~sK~~~  135 (299)
T PRK09987         69 KAESEPEFAQLLNATSVEAIAKAANEVGA---WVVHYSTDYVFPGT-------GDIPWQETDATAPLNV---YGETKLAG  135 (299)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEccceEECCC-------CCCCcCCCCCCCCCCH---HHHHHHHH
Confidence            44444555789999999999999998754   45555555577554       2457889988777777   99999999


Q ss_pred             HHhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcC
Q 042242          187 EKLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN  264 (303)
Q Consensus       187 e~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~  264 (303)
                      |..- .. .+++++||+++||++..   ++...+.  ..+.+  +.++.+.+....  ........+++++.++..++..
T Consensus       136 E~~~~~~~~~~~ilR~~~vyGp~~~---~~~~~~~--~~~~~--~~~~~v~~d~~g--~~~~~~~~~d~~~~~~~~~~~~  206 (299)
T PRK09987        136 EKALQEHCAKHLIFRTSWVYAGKGN---NFAKTML--RLAKE--REELSVINDQFG--APTGAELLADCTAHAIRVALNK  206 (299)
T ss_pred             HHHHHHhCCCEEEEecceecCCCCC---CHHHHHH--HHHhc--CCCeEEeCCCcC--CCCCHHHHHHHHHHHHHHhhcc
Confidence            8532 21 57899999999997532   2221111  11222  344444442100  1111112345566666555543


Q ss_pred             cCCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          265 DDISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       265 ~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                      +..    +++||+++++.+|+.|+++.|.+..
T Consensus       207 ~~~----~giyni~~~~~~s~~e~~~~i~~~~  234 (299)
T PRK09987        207 PEV----AGLYHLVASGTTTWHDYAALVFEEA  234 (299)
T ss_pred             CCC----CCeEEeeCCCCccHHHHHHHHHHHH
Confidence            321    2599999999999999999997753

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.96  E-value=1.4e-27  Score=214.96  Aligned_cols=244  Identities=15%  Similarity=0.065  Sum_probs=166.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .++|||||||||||++|+++|+ +.|++|++++|......      ...++++++.+|+.+.     .+.++|.|+|+|+
T Consensus       119 ~~kILVTGatGfIGs~Lv~~Ll-~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~-----~l~~~D~ViHlAa  192 (442)
T PLN02206        119 GLRVVVTGGAGFVGSHLVDRLM-ARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEP-----ILLEVDQIYHLAC  192 (442)
T ss_pred             CCEEEEECcccHHHHHHHHHHH-HCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccCh-----hhcCCCEEEEeee
Confidence            4799999999999999999999 68999999987532211      1234678888998774     3457888999987


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCC--CCCCCccchH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP--RVSKSNNFYY  179 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~--~~p~~~~~~y  179 (303)
                      .........++.+.++.|+.++.+++++|++.+.   ++++.|+..+|+...       ..+..|+..  ..|..+...|
T Consensus       193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~---r~V~~SS~~VYg~~~-------~~p~~E~~~~~~~P~~~~s~Y  262 (442)
T PLN02206        193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVYGDPL-------QHPQVETYWGNVNPIGVRSCY  262 (442)
T ss_pred             ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC---EEEEECChHHhCCCC-------CCCCCccccccCCCCCccchH
Confidence            5433222234456889999999999999998743   566666666785432       234555431  1122222338


Q ss_pred             HHHHHHHHH-----hcCC-cceEEecCCceeecCCCCcc-chhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHH
Q 042242          180 VLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLY-NFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSR  252 (303)
Q Consensus       180 ~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  252 (303)
                      +.+|...|.     .+.. ++++++||+++||++..... .....+  ...+.+  +.++.+.|..    .+..++++++
T Consensus       263 ~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~--i~~~l~--~~~i~i~g~G----~~~rdfi~V~  334 (442)
T PLN02206        263 DEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNF--VAQALR--KEPLTVYGDG----KQTRSFQFVS  334 (442)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHH--HHHHHc--CCCcEEeCCC----CEEEeEEeHH
Confidence            888877763     2222 99999999999997532111 111111  111222  3454554543    4456788999


Q ss_pred             HHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          253 LVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       253 d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      |+|++++.+++...     +++||+++++.+|++|+++.+++.+|.+.
T Consensus       335 Dva~ai~~a~e~~~-----~g~yNIgs~~~~sl~Elae~i~~~~g~~~  377 (442)
T PLN02206        335 DLVEGLMRLMEGEH-----VGPFNLGNPGEFTMLELAKVVQETIDPNA  377 (442)
T ss_pred             HHHHHHHHHHhcCC-----CceEEEcCCCceeHHHHHHHHHHHhCCCC
Confidence            99999998886542     25899999999999999999999998643

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.96  E-value=4.2e-27  Score=206.86  Aligned_cols=249  Identities=14%  Similarity=0.068  Sum_probs=177.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc---cc---------cCCCeEEEEecCCCHHHHHHHHhcc-
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT---AI---------QSSSYCFISCDLLNPLDIKRKLTLL-   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~~---------~~~~~~~~~~D~~~~~~l~~~~~~~-   93 (303)
                      ++++||||||+||||++|+++|+ ..|++|++++|++...   ..         ...+++++.+|+.|.+.+.++++.. 
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLL-SKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHH-HCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            45799999999999999999999 6899999999875421   00         0135788999999999999999864 


Q ss_pred             -CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC---CccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           94 -EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK---ALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        94 -~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                       |.|+|+|+..........+...+++|+.++.++++++++...   +++++++.|+..+|+..        ..+..|+.+
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~--------~~~~~E~~~  155 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGST--------PPPQSETTP  155 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCC--------CCCCCCCCC
Confidence             679999876443333334445779999999999999987632   23466666666677643        226788887


Q ss_pred             CCCCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhH-HHHHH-HHhhhCCCceeeCCchhhh
Q 042242          170 RVSKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGC-LCVYG-AVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~g~~~~~  241 (303)
                      ..|.++   |+.+|...|.     .... +.++..|+.++||++....  ++.. +..+. .+..+...+ .+.|+.   
T Consensus       156 ~~p~~~---Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~g~g---  226 (340)
T PLN02653        156 FHPRSP---YAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGEN--FVTRKITRAVGRIKVGLQKK-LFLGNL---  226 (340)
T ss_pred             CCCCCh---hHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcc--cchhHHHHHHHHHHcCCCCc-eEeCCC---
Confidence            776666   9998887773     2222 6778899999999753321  2111 11111 122211222 333433   


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                       .+..++++++|+|++++.++....  +   +.||+++++.+|++|+++.+.+.+|.+
T Consensus       227 -~~~rd~i~v~D~a~a~~~~~~~~~--~---~~yni~~g~~~s~~e~~~~i~~~~g~~  278 (340)
T PLN02653        227 -DASRDWGFAGDYVEAMWLMLQQEK--P---DDYVVATEESHTVEEFLEEAFGYVGLN  278 (340)
T ss_pred             -cceecceeHHHHHHHHHHHHhcCC--C---CcEEecCCCceeHHHHHHHHHHHcCCC
Confidence             456788899999999999887642  2   579999999999999999999999964

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.6e-27  Score=204.99  Aligned_cols=249  Identities=20%  Similarity=0.191  Sum_probs=177.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc-CceeEEeecccccCC
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL-EDVTHIFWVTWASQF  108 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-~~V~~~~~~~~~~~~  108 (303)
                      +|||||||||||++|+++|+ +.||+|++++|...+......++.++.+|+.+.+.+...++.. |.|+|+++.......
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~~   80 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLL-AAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPDS   80 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHH-hCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEccccCchhhh
Confidence            49999999999999999999 6799999999987664432257889999999998888888888 789999877554443


Q ss_pred             hH-HHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcC-CCCCCCCccchHHHHHHHH
Q 042242          109 AS-DMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE-CPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       109 ~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~-~~~~p~~~~~~y~~~k~~~  186 (303)
                      .. .+.+.++.|+.++.+++++|++.  ...++++.|+..+|+...      ...+..|+ .+..|.++   |+.+|...
T Consensus        81 ~~~~~~~~~~~nv~gt~~ll~aa~~~--~~~~~v~~ss~~~~~~~~------~~~~~~E~~~~~~p~~~---Yg~sK~~~  149 (314)
T COG0451          81 NASDPAEFLDVNVDGTLNLLEAARAA--GVKRFVFASSVSVVYGDP------PPLPIDEDLGPPRPLNP---YGVSKLAA  149 (314)
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEeCCCceECCCC------CCCCcccccCCCCCCCH---HHHHHHHH
Confidence            33 23458999999999999999983  345555544444443331      13367777 45555555   88888877


Q ss_pred             HH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc-eeeCCchhhhhhhcccCccHHHHHHHHH
Q 042242          187 EK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP-FVFGGTREIWEEYCLDGSDSRLVAEQHI  259 (303)
Q Consensus       187 e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~d~a~a~~  259 (303)
                      |.     .... ++++++||++|||++.....+..........+.+  +.+ ..+.+..    ....++++++|++++++
T Consensus       150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~i~v~D~a~~~~  223 (314)
T COG0451         150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLK--GEPIIVIGGDG----SQTRDFVYVDDVADALL  223 (314)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHh--CCCcceEeCCC----ceeEeeEeHHHHHHHHH
Confidence            72     3322 9999999999999765432111001111111222  333 3333322    34456888999999999


Q ss_pred             HHhcCcCCcCCCCceEEeecCC-CccHHhhHHHHHHHhcccCC
Q 042242          260 WVATNDDISSTKGQAFNAINGP-RFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       260 ~~~~~~~~~~~~g~~yni~~~~-~~s~~e~~~~i~~~~g~~~~  301 (303)
                      .++.++..    + .||++++. ..+++|+++.+++.+|.+.+
T Consensus       224 ~~~~~~~~----~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~  261 (314)
T COG0451         224 LALENPDG----G-VFNIGSGTAEITVRELAEAVAEAVGSKAP  261 (314)
T ss_pred             HHHhCCCC----c-EEEeCCCCCcEEHHHHHHHHHHHhCCCCc
Confidence            99988743    2 89999997 89999999999999998754

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.96  E-value=3.1e-27  Score=198.37  Aligned_cols=250  Identities=18%  Similarity=0.184  Sum_probs=170.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c--cCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I--QSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ++++|+|||||||||++|+++|+ .+||.|+++.|++.+..       +  ..++...+.+|+.|.+++.+++++||.||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence            46899999999999999999999 79999999999988631       1  13458899999999999999999999999


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC---
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS---  174 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~---  174 (303)
                      |+|......... .+.+.++..+.|+.+++++|++.. .++++++.|+...-.......+  ....++|+.=..+..   
T Consensus        84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv~~~~~~~~--~~~vvdE~~wsd~~~~~~  159 (327)
T KOG1502|consen   84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAVRYNGPNIG--ENSVVDEESWSDLDFCRC  159 (327)
T ss_pred             EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHhccCCcCCC--CCcccccccCCcHHHHHh
Confidence            998765443333 233589999999999999999874 5666666664322211100011  122333433111111   


Q ss_pred             ccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC
Q 042242          175 NNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       175 ~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                      ....|..+|.++|.     +.+. ++.+.+-|+.|+||......+.  .......+.+  |..-..+       ..+..+
T Consensus       160 ~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~--s~~~~l~~i~--G~~~~~~-------n~~~~~  228 (327)
T KOG1502|consen  160 KKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNS--SLNALLKLIK--GLAETYP-------NFWLAF  228 (327)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccch--hHHHHHHHHh--cccccCC-------CCceee
Confidence            12358888888883     3333 9999999999999765432121  1222222222  2111111       233448


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      +|++|+|.+++.+++.+...    +.|.+.+. ..++.|+++.+.+.+.
T Consensus       229 VdVrDVA~AHv~a~E~~~a~----GRyic~~~-~~~~~ei~~~l~~~~P  272 (327)
T KOG1502|consen  229 VDVRDVALAHVLALEKPSAK----GRYICVGE-VVSIKEIADILRELFP  272 (327)
T ss_pred             EeHHHHHHHHHHHHcCcccC----ceEEEecC-cccHHHHHHHHHHhCC
Confidence            99999999999999999775    47866665 4459999999988764

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.96  E-value=2.9e-27  Score=203.14  Aligned_cols=228  Identities=17%  Similarity=0.131  Sum_probs=166.6

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeecccccC
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWASQ  107 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~~~  107 (303)
                      +|||||||||||+++++.|+ +.||+|++++|.              .+|+.+.+.+.++++++  |.|+|+++......
T Consensus         1 kilv~G~tG~iG~~l~~~l~-~~g~~v~~~~r~--------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~   65 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLS-PEGRVVVALTSS--------------QLDLTDPEALERLLRAIRPDAVVNTAAYTDVDG   65 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHH-hcCCEEEEeCCc--------------ccCCCCHHHHHHHHHhCCCCEEEECCccccccc
Confidence            58999999999999999999 689999999986              37999999999999987  67999976543322


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                      ....+...++.|+.++.++++++++...   ++++.|+..+|++.       ...+++|+++..|.++   |+.+|...|
T Consensus        66 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~v~~Ss~~vy~~~-------~~~~~~E~~~~~~~~~---Y~~~K~~~E  132 (287)
T TIGR01214        66 AESDPEKAFAVNALAPQNLARAAARHGA---RLVHISTDYVFDGE-------GKRPYREDDATNPLNV---YGQSKLAGE  132 (287)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeeeeeecCC-------CCCCCCCCCCCCCcch---hhHHHHHHH
Confidence            2223334789999999999999987643   44555555577442       2456888887665566   999888887


Q ss_pred             Hh-cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          188 KL-AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       188 ~~-~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      .. ... ++++++||+.+||++..  .++...+  ...+..  +.++...+      ..+.++++++|+|.++++++..+
T Consensus       133 ~~~~~~~~~~~ilR~~~v~G~~~~--~~~~~~~--~~~~~~--~~~~~~~~------~~~~~~v~v~Dva~a~~~~~~~~  200 (287)
T TIGR01214       133 QAIRAAGPNALIVRTSWLYGGGGG--RNFVRTM--LRLAGR--GEELRVVD------DQIGSPTYAKDLARVIAALLQRL  200 (287)
T ss_pred             HHHHHhCCCeEEEEeeecccCCCC--CCHHHHH--HHHhhc--CCCceEec------CCCcCCcCHHHHHHHHHHHHhhc
Confidence            42 222 89999999999997532  1221111  111111  23444444      23346788999999999988775


Q ss_pred             CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          266 DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       266 ~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ...+   ++||+++++.+|+.|+++.+++.+|++.
T Consensus       201 ~~~~---~~~ni~~~~~~s~~e~~~~i~~~~~~~~  232 (287)
T TIGR01214       201 ARAR---GVYHLANSGQCSWYEFAQAIFEEAGADG  232 (287)
T ss_pred             cCCC---CeEEEECCCCcCHHHHHHHHHHHhCccc
Confidence            3333   7999999999999999999999999764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.96  E-value=6.5e-27  Score=206.30  Aligned_cols=250  Identities=16%  Similarity=0.074  Sum_probs=174.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHHHHhcc--CceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKRKLTLL--EDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~   98 (303)
                      ++|+||||||+||||+++++.|+ +.|++|++++|++.....      ...+++++.+|+.|.+++.++++..  |.|+|
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLL-ELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHH-HCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            45899999999999999999999 689999999997654220      1235778899999999999999875  66999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      +++......+..++...+++|+.++.+++++++..+ ...+++++|+..+|+....      ..++.|+.+..|.++   
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~iv~~SS~~vyg~~~~------~~~~~e~~~~~p~~~---  151 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG-SVKAVVNVTSDKCYRNDEW------VWGYRETDPLGGHDP---  151 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcC-CCCEEEEEechhhhCCCCC------CCCCccCCCCCCCCc---
Confidence            987554444444555689999999999999998653 2346666666667754321      235677777666666   


Q ss_pred             HHHHHHHHH-----Hhc---------CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhh
Q 042242          179 YVLEDLLKE-----KLA---------GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       179 y~~~k~~~e-----~~~---------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (303)
                      |+.+|...|     +..         + ++++++||+++||++......+...   +..... .+.++.+++.     .+
T Consensus       152 Y~~sK~~~e~~~~~~~~~~~~~~~~~~-i~~~~lR~~~vyGp~~~~~~~~~~~---~~~~~~-~g~~~~~~~g-----~~  221 (349)
T TIGR02622       152 YSSSKACAELVIASYRSSFFGVANFHG-IKIASARAGNVIGGGDWAEDRLIPD---VIRAFS-SNKIVIIRNP-----DA  221 (349)
T ss_pred             chhHHHHHHHHHHHHHHHhhcccccCC-CcEEEEccCcccCCCcchhhhhhHH---HHHHHh-cCCCeEECCC-----Cc
Confidence            888777665     111         4 8999999999999753221112121   111111 2445454432     45


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCc-CCCCceEEeecC--CCccHHhhHHHHHHHhc
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDIS-STKGQAFNAING--PRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~-~~~g~~yni~~~--~~~s~~e~~~~i~~~~g  297 (303)
                      ..++++++|+|.+++.++...... ...+++|||+++  +++|+.|+++.+.+.++
T Consensus       222 ~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~  277 (349)
T TIGR02622       222 TRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWW  277 (349)
T ss_pred             ccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhc
Confidence            567889999999998876542100 011369999964  69999999999998765

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02240 UDP-glucose 4-epimerase

Probab=99.96  E-value=1.1e-26  Score=205.18  Aligned_cols=263  Identities=16%  Similarity=0.087  Sum_probs=177.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHhc-
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLTL-   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~~-   92 (303)
                      ++++++|+|||||||||++|+++|+ +.|++|++++|......           ....+++++.+|+.|.+.+..+++. 
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~-~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~   80 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLL-LAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST   80 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence            3456899999999999999999999 67999999987542210           0123678899999999999998874 


Q ss_pred             -cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           93 -LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        93 -~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                       +|.|+|+++..........+.+.++.|+.++.+++++|++..  ..+++++|+..+|+..       ...+++|+.+..
T Consensus        81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~Ss~~vyg~~-------~~~~~~E~~~~~  151 (352)
T PLN02240         81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG--CKKLVFSSSATVYGQP-------EEVPCTEEFPLS  151 (352)
T ss_pred             CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEEccHHHhCCC-------CCCCCCCCCCCC
Confidence             567999976533222223344589999999999999998753  3455566555567543       244688888877


Q ss_pred             CCCccchHHHHHHHHHH-----h-cCC-cceEEecCCceeecCCCCc-----cchhhHHHH-HHHHhhhCCCceeeCCch
Q 042242          172 SKSNNFYYVLEDLLKEK-----L-AGK-VAWSVHRPGLLLGSSHRSL-----YNFLGCLCV-YGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~-----~-~~~-~~~~ilRp~~v~G~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~g~~  238 (303)
                      |..+   |+.+|...|.     . .+. ++++++|++++||+.+...     ......+.. ...+..+...++...|..
T Consensus       152 ~~~~---Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  228 (352)
T PLN02240        152 ATNP---YGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGND  228 (352)
T ss_pred             CCCH---HHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCC
Confidence            6666   8888777762     1 222 8899999999999643210     000011111 122222222223222210


Q ss_pred             ---hhhhhhcccCccHHHHHHHHHHHhcCcC-CcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          239 ---EIWEEYCLDGSDSRLVAEQHIWVATNDD-ISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       239 ---~~~~~~~~~~~~~~d~a~a~~~~~~~~~-~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                         ... .+..++++++|+|++++.++.... .....+++||+++++.+|++|+++.+++.+|++.+
T Consensus       229 ~~~~~g-~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~  294 (352)
T PLN02240        229 YPTKDG-TGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIP  294 (352)
T ss_pred             CCCCCC-CEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCC
Confidence               001 566789999999999888775420 00022479999999999999999999999998765

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.96  E-value=5.1e-27  Score=207.33  Aligned_cols=255  Identities=15%  Similarity=0.121  Sum_probs=172.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcc-c--cc----cCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEI-T--AI----QSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~-~--~~----~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      ++|||||||||||++|+++|+ +.|++ |++++|.... .  ..    ...+++++.+|++|.+++.++++.  +|.|+|
T Consensus         1 mkilITGgtG~iG~~l~~~L~-~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHII-NNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHH-HhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            379999999999999999999 56765 6666654311 0  00    123577889999999999999975  577999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-------CCccEEEEeecccccccccC---CCcccccCCcCcCC
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-------KALKHVSLQTGMKHYVSLQG---LPEEKQVRFYDEEC  168 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-------~~~~~~~~~s~~~~y~~~~~---~~g~~~~~~~~e~~  168 (303)
                      +|+..........+.+.+++|+.++.+++++|++..       .+..+++++|+..+|+....   ..+.....++.|+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~  159 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT  159 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence            987643332333345589999999999999998641       12345666666667754210   00000012467877


Q ss_pred             CCCCCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          169 PRVSKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      +..|.++   |+.+|...|.     .... ++++++||+.+||++.... .++..+  ...+..  +.++.+.+..    
T Consensus       160 ~~~p~~~---Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~-~~~~~~--~~~~~~--~~~~~~~~~g----  227 (352)
T PRK10084        160 AYAPSSP---YSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE-KLIPLV--ILNALE--GKPLPIYGKG----  227 (352)
T ss_pred             CCCCCCh---hHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc-chHHHH--HHHHhc--CCCeEEeCCC----
Confidence            7766666   8988887762     2222 8999999999999753211 111111  111222  3344443332    


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      .+..++++++|+|++++.++..+. .   +++||+++++..|++|+++.+++.+|...
T Consensus       228 ~~~~~~v~v~D~a~a~~~~l~~~~-~---~~~yni~~~~~~s~~~~~~~i~~~~~~~~  281 (352)
T PRK10084        228 DQIRDWLYVEDHARALYKVVTEGK-A---GETYNIGGHNEKKNLDVVLTICDLLDEIV  281 (352)
T ss_pred             CeEEeeEEHHHHHHHHHHHHhcCC-C---CceEEeCCCCcCcHHHHHHHHHHHhcccc
Confidence            556788999999999988876542 2   37999999999999999999999998643

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.96  E-value=6.2e-27  Score=203.70  Aligned_cols=247  Identities=15%  Similarity=0.111  Sum_probs=172.7

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCccc-----c--ccCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           30 VAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEIT-----A--IQSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~-----~--~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      +|+||||||+||++++++|++ .|  ++|++++|.....     .  ...++++++.+|+.|.+++.+++++  +|.|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   79 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILN-EHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVH   79 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHH-hCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEE
Confidence            589999999999999999984 44  7899988743111     0  1123678899999999999999988  678999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      +++..............+++|+.++.+++++|.+...+. +++++|+..+|+....      ..++.|+.+..|.++   
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~i~~Ss~~v~g~~~~------~~~~~e~~~~~~~~~---  149 (317)
T TIGR01181        80 FAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEF-RFHHISTDEVYGDLEK------GDAFTETTPLAPSSP---  149 (317)
T ss_pred             cccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCc-eEEEeeccceeCCCCC------CCCcCCCCCCCCCCc---
Confidence            987654443334445578999999999999998753222 4556566557754321      225777777665555   


Q ss_pred             HHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHH
Q 042242          179 YVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSR  252 (303)
Q Consensus       179 y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  252 (303)
                      |+.+|...|.     .... ++++++||+.+||+.... ..+...+.  ..+..  +.++.+.++.    .+..++++++
T Consensus       150 Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~-~~~~~~~~--~~~~~--~~~~~~~~~g----~~~~~~i~v~  220 (317)
T TIGR01181       150 YSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFP-EKLIPLMI--TNALA--GKPLPVYGDG----QQVRDWLYVE  220 (317)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCc-ccHHHHHH--HHHhc--CCCceEeCCC----ceEEeeEEHH
Confidence            8887776662     2222 899999999999964321 12222111  11222  3333333332    4556789999


Q ss_pred             HHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          253 LVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       253 d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      |+|+++..++... ..   +++||+++++.+|++|+++.+.+.+|++.
T Consensus       221 D~a~~~~~~~~~~-~~---~~~~~~~~~~~~s~~~~~~~i~~~~~~~~  264 (317)
T TIGR01181       221 DHCRAIYLVLEKG-RV---GETYNIGGGNERTNLEVVETILELLGKDE  264 (317)
T ss_pred             HHHHHHHHHHcCC-CC---CceEEeCCCCceeHHHHHHHHHHHhCCCc
Confidence            9999998888654 22   37999999999999999999999999753

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02214 cinnamoyl-CoA reductase

Probab=99.96  E-value=5.5e-27  Score=205.87  Aligned_cols=243  Identities=19%  Similarity=0.193  Sum_probs=165.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------cc--CCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQ--SSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~--~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      ++++||||||+||||++|+++|+ +.||+|++++|+.....      ..  ..+++++.+|+.|.+.+.++++++|.|+|
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILL-ERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            45799999999999999999999 68999999999765321      11  13578889999999999999999999999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecc-cccccccCCCcccccCCcCcCCCCC---CCC
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM-KHYVSLQGLPEEKQVRFYDEECPRV---SKS  174 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~-~~y~~~~~~~g~~~~~~~~e~~~~~---p~~  174 (303)
                      +++...  .   .+.+.++.|+.++.+++++|++.+  +.++++.|+. .+|+......    ..+++|++...   +..
T Consensus        88 ~A~~~~--~---~~~~~~~~nv~gt~~ll~aa~~~~--v~r~V~~SS~~avyg~~~~~~----~~~~~E~~~~~~~~~~~  156 (342)
T PLN02214         88 TASPVT--D---DPEQMVEPAVNGAKFVINAAAEAK--VKRVVITSSIGAVYMDPNRDP----EAVVDESCWSDLDFCKN  156 (342)
T ss_pred             ecCCCC--C---CHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEeccceeeeccCCCCC----CcccCcccCCChhhccc
Confidence            987532  1   233478999999999999999763  3355555542 3665322100    12356664211   112


Q ss_pred             ccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC
Q 042242          175 NNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       175 ~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                      |...|+.+|...|.     .... ++++++||++|||++......  ..+.....+..  +.... .+      ....++
T Consensus       157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~--~~~~~~~~~~~--g~~~~-~~------~~~~~~  225 (342)
T PLN02214        157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTIN--ASLYHVLKYLT--GSAKT-YA------NLTQAY  225 (342)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC--chHHHHHHHHc--CCccc-CC------CCCcCe
Confidence            23338888877772     2222 999999999999976432111  11111111111  22222 22      223468


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      +|++|+|++++.++..+..    ++.||+++ ...+++|+++.+++.++
T Consensus       226 i~V~Dva~a~~~al~~~~~----~g~yn~~~-~~~~~~el~~~i~~~~~  269 (342)
T PLN02214        226 VDVRDVALAHVLVYEAPSA----SGRYLLAE-SARHRGEVVEILAKLFP  269 (342)
T ss_pred             eEHHHHHHHHHHHHhCccc----CCcEEEec-CCCCHHHHHHHHHHHCC
Confidence            9999999999999887632    25899987 47899999999999985

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.95  E-value=6.4e-27  Score=202.99  Aligned_cols=239  Identities=14%  Similarity=0.113  Sum_probs=157.2

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHH---H-HHHHHh-----ccCceeEEee
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPL---D-IKRKLT-----LLEDVTHIFW  101 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~---~-l~~~~~-----~~~~V~~~~~  101 (303)
                      |||||||||||++|+++|+ +.|++++++.|+......   ......+|+.|..   . +..+++     ++|.|+|+|+
T Consensus         2 ilVtGa~GfiG~~l~~~L~-~~g~~~v~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~   77 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALN-DKGITDILVVDNLKDGTK---FVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGA   77 (308)
T ss_pred             EEEecCCcHHHHHHHHHHH-hCCCceEEEecCCCcchH---HHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECce
Confidence            7999999999999999999 679987776665432110   1123345655543   3 233332     4677999987


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVL  181 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~  181 (303)
                      .......  +....++.|+.++.+++++|++.+.   .+++.|+..+|+...       ..+..|+.+..|.++   |+.
T Consensus        78 ~~~~~~~--~~~~~~~~n~~~t~~ll~~~~~~~~---~~i~~SS~~vyg~~~-------~~~~~E~~~~~p~~~---Y~~  142 (308)
T PRK11150         78 CSSTTEW--DGKYMMDNNYQYSKELLHYCLEREI---PFLYASSAATYGGRT-------DDFIEEREYEKPLNV---YGY  142 (308)
T ss_pred             ecCCcCC--ChHHHHHHHHHHHHHHHHHHHHcCC---cEEEEcchHHhCcCC-------CCCCccCCCCCCCCH---HHH
Confidence            5332221  2234789999999999999998643   356666666775431       234667766666666   898


Q ss_pred             HHHHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHH-HHhhhCCCceeeCCchhhhhhhcccCccHHHH
Q 042242          182 EDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYG-AVCKHLNLPFVFGGTREIWEEYCLDGSDSRLV  254 (303)
Q Consensus       182 ~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  254 (303)
                      +|...|     +.... ++++++||+++||++.............+. .+.++ ..+..++|+.    ....++++++|+
T Consensus       143 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~g~~----~~~r~~i~v~D~  217 (308)
T PRK11150        143 SKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNG-ENPKLFEGSE----NFKRDFVYVGDV  217 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcC-CCCEEecCCC----ceeeeeeeHHHH
Confidence            888766     22222 999999999999976432211111111111 12221 2233444433    345678999999


Q ss_pred             HHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          255 AEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       255 a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      |++++.++....  +   ++||+++++.+|+.|+++.+.+.+|.
T Consensus       218 a~a~~~~~~~~~--~---~~yni~~~~~~s~~el~~~i~~~~~~  256 (308)
T PRK11150        218 AAVNLWFWENGV--S---GIFNCGTGRAESFQAVADAVLAYHKK  256 (308)
T ss_pred             HHHHHHHHhcCC--C---CeEEcCCCCceeHHHHHHHHHHHhCC
Confidence            999888876532  2   59999999999999999999999884

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.95  E-value=5.9e-27  Score=195.34  Aligned_cols=223  Identities=20%  Similarity=0.199  Sum_probs=165.1

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeeccccc
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWAS  106 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~~  106 (303)
                      |||||||||||++++++|+ +.|++|+.+.|++.+...  ...+++++.+|+.|.+.+.++++..  |.|+|+++.....
T Consensus         1 IlI~GatG~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~   79 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLL-KKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNP   79 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHH
T ss_pred             EEEEccCCHHHHHHHHHHH-HcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeecccccc
Confidence            7999999999999999999 789999999998876532  1138899999999999999999988  7799997764322


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .......+.++.|+.++.+++++|++...  .++++.++...|+..       ...+++|+++..|.++   |+.+|...
T Consensus        80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~i~~sS~~~y~~~-------~~~~~~e~~~~~~~~~---Y~~~K~~~  147 (236)
T PF01370_consen   80 ESFEDPEEIIEANVQGTRNLLEAAREAGV--KRFIFLSSASVYGDP-------DGEPIDEDSPINPLSP---YGASKRAA  147 (236)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHTT--SEEEEEEEGGGGTSS-------SSSSBETTSGCCHSSH---HHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccc--ccccccccccccccc-------cccccccccccccccc---cccccccc
Confidence            23344556889999999999999998743  566666666677555       2556788888766667   88877766


Q ss_pred             H-----Hhc--CCcceEEecCCceeecCC-CC-ccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHH
Q 042242          187 E-----KLA--GKVAWSVHRPGLLLGSSH-RS-LYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQ  257 (303)
Q Consensus       187 e-----~~~--~~~~~~ilRp~~v~G~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a  257 (303)
                      |     +.+  + ++++++||+.+||+.. .. ...+...+  ...+.  .+.++.+++..    .+..++++++|+|++
T Consensus       148 e~~~~~~~~~~~-~~~~~~R~~~vyG~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~----~~~~~~i~v~D~a~~  218 (236)
T PF01370_consen  148 EELLRDYAKKYG-LRVTILRPPNVYGPGNPNNNSSSFLPSL--IRQAL--KGKPIKIPGDG----SQVRDFIHVDDLAEA  218 (236)
T ss_dssp             HHHHHHHHHHHT-SEEEEEEESEEESTTSSSSSTSSHHHHH--HHHHH--TTSSEEEESTS----SCEEEEEEHHHHHHH
T ss_pred             cccccccccccc-cccccccccccccccccccccccccchh--hHHhh--cCCcccccCCC----CCccceEEHHHHHHH
Confidence            6     222  4 9999999999999761 11 11111221  11122  25556665544    567889999999999


Q ss_pred             HHHHhcCcCCcCCCCceEEee
Q 042242          258 HIWVATNDDISSTKGQAFNAI  278 (303)
Q Consensus       258 ~~~~~~~~~~~~~~g~~yni~  278 (303)
                      +++++.++...+   ++|||+
T Consensus       219 ~~~~~~~~~~~~---~~yNig  236 (236)
T PF01370_consen  219 IVAALENPKAAG---GIYNIG  236 (236)
T ss_dssp             HHHHHHHSCTTT---EEEEES
T ss_pred             HHHHHhCCCCCC---CEEEeC
Confidence            999999987443   899985

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.95  E-value=4.1e-26  Score=199.40  Aligned_cols=250  Identities=18%  Similarity=0.162  Sum_probs=169.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc----CCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ----SSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      .+|+||||||+||||++++++|+ ..|++|++++|++....     ..    ..+++++.+|++|.+.+.++++++|.|+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLL-FRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            35899999999999999999999 68999999988765321     00    1357889999999999999999999899


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC---
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS---  174 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~---  174 (303)
                      |+|+......+.....+.++.|+.++.++++++.+.. ...+++++|+...|++.....+  ...+++|+.+..|..   
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~SS~~~~~~~~~~~~--~~~~~~E~~~~~p~~~~~  159 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTSSMAAVLAPETKLG--PNDVVDETFFTNPSFAEE  159 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecchhheecCCccCC--CCCccCcCCCCchhHhcc
Confidence            9987543322223334578999999999999998752 2345666665445543211000  123467776655421   


Q ss_pred             ccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC
Q 042242          175 NNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       175 ~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                      +...|+.+|...|.     .+.. ++++++||+++||++.....++...  ....+..  +.+..  +      ....++
T Consensus       160 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~--~i~~~~~--~~~~~--~------~~~r~~  227 (325)
T PLN02989        160 RKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVA--VIVELMK--GKNPF--N------TTHHRF  227 (325)
T ss_pred             cccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHH--HHHHHHc--CCCCC--C------CcCcCe
Confidence            12238888887772     2222 9999999999999764322122111  1112222  22211  1      122458


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      ++++|+|++++.++..+.. +   ++||++ +..+|++|+++.|++.++
T Consensus       228 i~v~Dva~a~~~~l~~~~~-~---~~~ni~-~~~~s~~ei~~~i~~~~~  271 (325)
T PLN02989        228 VDVRDVALAHVKALETPSA-N---GRYIID-GPVVTIKDIENVLREFFP  271 (325)
T ss_pred             eEHHHHHHHHHHHhcCccc-C---ceEEEe-cCCCCHHHHHHHHHHHCC
Confidence            8999999999998877643 2   589995 558999999999999987

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.95  E-value=3e-26  Score=200.04  Aligned_cols=247  Identities=15%  Similarity=0.160  Sum_probs=167.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c--cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I--QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +++|||||||||||++|+++|+ +.||+|++++|+.....       .  ..++++++.+|+.|.+.+..+++++|.|+|
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLL-QRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHH-HCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            5799999999999999999999 68999999999765321       0  024688999999999999999999999999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccc--ccccccCCCcccccCCcCcCCCCCCCC--
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMK--HYVSLQGLPEEKQVRFYDEECPRVSKS--  174 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~--~y~~~~~~~g~~~~~~~~e~~~~~p~~--  174 (303)
                      +|+.......... .+.+++|+.++.++++++.+. ..+.++++.|+..  .|++....    ...+++|+.+..|.+  
T Consensus        83 ~A~~~~~~~~~~~-~~~~~~nv~gt~~ll~a~~~~-~~~~~~v~~SS~~~~~y~~~~~~----~~~~~~E~~~~~p~~~~  156 (322)
T PLN02662         83 TASPFYHDVTDPQ-AELIDPAVKGTLNVLRSCAKV-PSVKRVVVTSSMAAVAYNGKPLT----PDVVVDETWFSDPAFCE  156 (322)
T ss_pred             eCCcccCCCCChH-HHHHHHHHHHHHHHHHHHHhC-CCCCEEEEccCHHHhcCCCcCCC----CCCcCCcccCCChhHhh
Confidence            9875322111111 247899999999999999865 1244666666543  35322100    123467766554421  


Q ss_pred             -ccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhccc
Q 042242          175 -NNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLD  247 (303)
Q Consensus       175 -~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  247 (303)
                       ....|+.+|.+.|.     .+.. ++++++||+++||+...........  ....+..  +.+ .++       ....+
T Consensus       157 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~--~~~~~~~--~~~-~~~-------~~~~~  224 (322)
T PLN02662        157 ESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAE--AILNLIN--GAQ-TFP-------NASYR  224 (322)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHH--HHHHHhc--CCc-cCC-------CCCcC
Confidence             11238888887763     2222 9999999999999754322111111  1111111  222 111       23457


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      ++|++|+|++++.++..+...    +.||++ +..+|++|+++.+.+.++.
T Consensus       225 ~i~v~Dva~a~~~~~~~~~~~----~~~~~~-g~~~s~~e~~~~i~~~~~~  270 (322)
T PLN02662        225 WVDVRDVANAHIQAFEIPSAS----GRYCLV-ERVVHYSEVVKILHELYPT  270 (322)
T ss_pred             eEEHHHHHHHHHHHhcCcCcC----CcEEEe-CCCCCHHHHHHHHHHHCCC
Confidence            899999999999988876432    478887 4789999999999998763

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.95  E-value=6.2e-26  Score=199.37  Aligned_cols=258  Identities=14%  Similarity=0.074  Sum_probs=172.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      ++|+|||||||||++|+++|+ +.|++|++++|......        ....++.++.+|+.|.+.+.++++.  +|.|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh   79 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLL-QNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH   79 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHH-HCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence            479999999999999999999 68999999987532211        0123467889999999999988874  677999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC-CCCCccc
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR-VSKSNNF  177 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~-~p~~~~~  177 (303)
                      +++............+.++.|+.++.+++++|++.+  ..+++++|+..+|+..       ...+++|+++. .|..+  
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~Ss~~~yg~~-------~~~~~~E~~~~~~p~~~--  148 (338)
T PRK10675         80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNLIFSSSATVYGDQ-------PKIPYVESFPTGTPQSP--  148 (338)
T ss_pred             CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccHHhhCCC-------CCCccccccCCCCCCCh--
Confidence            976543222223334578999999999999999763  3456666665577532       23457787765 44455  


Q ss_pred             hHHHHHHHHH-----Hhc-CC-cceEEecCCceeecCCCCccc-----hhhHHH-HHHHHhhhCCCceeeCCch---hhh
Q 042242          178 YYVLEDLLKE-----KLA-GK-VAWSVHRPGLLLGSSHRSLYN-----FLGCLC-VYGAVCKHLNLPFVFGGTR---EIW  241 (303)
Q Consensus       178 ~y~~~k~~~e-----~~~-~~-~~~~ilRp~~v~G~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~g~~---~~~  241 (303)
                       |+.+|...|     +.+ .. ++++++|++++||+.+...+.     ....+. ....+......++.+.|..   ...
T Consensus       149 -Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  227 (338)
T PRK10675        149 -YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG  227 (338)
T ss_pred             -hHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCC
Confidence             888777666     222 22 889999999999974321110     001111 1111222112222222210   001


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                       .+..++++++|+|++++.++...... .++++||+++++.+|+.|+++.+++.+|++.+
T Consensus       228 -~~~~~~v~v~D~a~~~~~~~~~~~~~-~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  285 (338)
T PRK10675        228 -TGVRDYIHVMDLADGHVAAMEKLANK-PGVHIYNLGAGVGSSVLDVVNAFSKACGKPVN  285 (338)
T ss_pred             -cEEEeeEEHHHHHHHHHHHHHhhhcc-CCCceEEecCCCceeHHHHHHHHHHHhCCCCC
Confidence             56678999999999999888652111 22479999999999999999999999998754

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.95  E-value=9.5e-26  Score=198.11  Aligned_cols=257  Identities=16%  Similarity=0.145  Sum_probs=167.5

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c-cCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I-QSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~-~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      -+++++++||||||+||||++|+++|+ +.|++|++++|+.....       . ...+++++.+|++|.+.+.+.++++|
T Consensus         4 ~~~~~~~~vlItG~~GfIG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   82 (338)
T PLN00198          4 LTPTGKKTACVIGGTGFLASLLIKLLL-QKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCD   82 (338)
T ss_pred             ccCCCCCeEEEECCchHHHHHHHHHHH-HCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCC
Confidence            345667899999999999999999999 68999999998764321       1 11358889999999999999999999


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC------
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC------  168 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~------  168 (303)
                      .|+|+|+...... .....+.+++|+.++.++++++.+.. ...++++.|+...|+.... .+  ...+..|+.      
T Consensus        83 ~vih~A~~~~~~~-~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~SS~~~~g~~~~-~~--~~~~~~E~~~~~~~~  157 (338)
T PLN00198         83 LVFHVATPVNFAS-EDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTSSAAAVSINKL-SG--TGLVMNEKNWTDVEF  157 (338)
T ss_pred             EEEEeCCCCccCC-CChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEeecceeeeccCC-CC--CCceeccccCCchhh
Confidence            9999987432111 11112367999999999999998752 2446666666556753210 00  011233321      


Q ss_pred             ---CCCCCCccchHHHHHHHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC-ch
Q 042242          169 ---PRVSKSNNFYYVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG-TR  238 (303)
Q Consensus       169 ---~~~p~~~~~~y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~  238 (303)
                         +..|.++   |+.+|...|     +.... ++++++||++|||++.......  .+.....+..  +.++...| ..
T Consensus       158 ~~~~~~p~~~---Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~--~~~~~~~~~~--~~~~~~~g~~~  230 (338)
T PLN00198        158 LTSEKPPTWG---YPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPS--SLSLAMSLIT--GNEFLINGLKG  230 (338)
T ss_pred             hhhcCCccch---hHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCC--cHHHHHHHHc--CCccccccccc
Confidence               1223445   888888777     22322 9999999999999764321111  1111111111  33333333 11


Q ss_pred             -hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          239 -EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       239 -~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                       ..+ ....+++|++|+|++++.++..+...    +.| ++++...|+.|+++.+.+.++.
T Consensus       231 ~~~~-~~~~~~i~V~D~a~a~~~~~~~~~~~----~~~-~~~~~~~s~~el~~~i~~~~~~  285 (338)
T PLN00198        231 MQML-SGSISITHVEDVCRAHIFLAEKESAS----GRY-ICCAANTSVPELAKFLIKRYPQ  285 (338)
T ss_pred             cccc-cCCcceeEHHHHHHHHHHHhhCcCcC----CcE-EEecCCCCHHHHHHHHHHHCCC
Confidence             111 12358999999999999988775322    468 4556778999999999988753

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.95  E-value=1.9e-25  Score=195.38  Aligned_cols=245  Identities=18%  Similarity=0.172  Sum_probs=170.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      ++|+||||+||||+++++.|+ +.|++|++++|++.... ....+++++.+|+.|.+++.++++++|.|+|+++....  
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~~--   77 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLL-EQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYRL--   77 (328)
T ss_pred             CeEEEECCccchhHHHHHHHH-HCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceeccc--
Confidence            479999999999999999999 68999999999876532 22347889999999999999999999989999764211  


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                      ....+.+.++.|+.++.++++++++..  ..++++.|+..+|+...      ...+.+|+.+..|..+...|+.+|...|
T Consensus        78 ~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~------~~~~~~e~~~~~~~~~~~~Y~~sK~~~e  149 (328)
T TIGR03466        78 WAPDPEEMYAANVEGTRNLLRAALEAG--VERVVYTSSVATLGVRG------DGTPADETTPSSLDDMIGHYKRSKFLAE  149 (328)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEechhhcCcCC------CCCCcCccCCCCcccccChHHHHHHHHH
Confidence            122234478999999999999998763  34666666655675321      1346777777654333334887776665


Q ss_pred             -----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          188 -----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       188 -----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                           +.... ++++++||+.+||++....... ..+  ...... ...+.. .+       ...++++++|+|++++.+
T Consensus       150 ~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~-~~~--~~~~~~-~~~~~~-~~-------~~~~~i~v~D~a~a~~~~  217 (328)
T TIGR03466       150 QAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPT-GRI--IVDFLN-GKMPAY-VD-------TGLNLVHVDDVAEGHLLA  217 (328)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcH-HHH--HHHHHc-CCCcee-eC-------CCcceEEHHHHHHHHHHH
Confidence                 22222 8999999999999754322111 111  111111 122322 12       123578999999999988


Q ss_pred             hcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          262 ATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +..+. .   +..||++ ++.+|+.|+++.+++.+|++.+
T Consensus       218 ~~~~~-~---~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~  252 (328)
T TIGR03466       218 LERGR-I---GERYILG-GENLTLKQILDKLAEITGRPAP  252 (328)
T ss_pred             HhCCC-C---CceEEec-CCCcCHHHHHHHHHHHhCCCCC
Confidence            87643 2   3678875 6889999999999999998654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.95  E-value=1.1e-25  Score=196.32  Aligned_cols=246  Identities=15%  Similarity=0.142  Sum_probs=166.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----c-----cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----I-----QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~-----~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +++|||||||||||++++++|+ +.||+|+++.|+..+..    .     ...+++++.+|++|.+.+.++++++|.|+|
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLL-LRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            5799999999999999999999 68999999999765421    0     124688999999999999999999999999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccccc--ccccCCCcccccCCcCcCCCCCCC---
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHY--VSLQGLPEEKQVRFYDEECPRVSK---  173 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y--~~~~~~~g~~~~~~~~e~~~~~p~---  173 (303)
                      +|+........ ...+.++.|+.++.++++++++. ..+.+++++|+...|  +.....    ...+++|++...|.   
T Consensus        84 ~A~~~~~~~~~-~~~~~~~~nv~gt~~ll~~~~~~-~~v~rvV~~SS~~~~~~~~~~~~----~~~~~~E~~~~~p~~~~  157 (322)
T PLN02986         84 TASPVFFTVKD-PQTELIDPALKGTINVLNTCKET-PSVKRVILTSSTAAVLFRQPPIE----ANDVVDETFFSDPSLCR  157 (322)
T ss_pred             eCCCcCCCCCC-chhhhhHHHHHHHHHHHHHHHhc-CCccEEEEecchhheecCCccCC----CCCCcCcccCCChHHhh
Confidence            98753221111 11236899999999999999874 224456666554333  221100    12345666543321   


Q ss_pred             CccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhccc
Q 042242          174 SNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLD  247 (303)
Q Consensus       174 ~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  247 (303)
                      .+...|+.+|.+.|.     .+.. ++++++||+.+||+......++...  ....+..  +.+.  .+      ....+
T Consensus       158 ~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~--~~~~~~~--g~~~--~~------~~~~~  225 (322)
T PLN02986        158 ETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVE--LIVDFIN--GKNL--FN------NRFYR  225 (322)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHH--HHHHHHc--CCCC--CC------CcCcc
Confidence            123348888887762     2222 9999999999999753322121111  1111111  2232  12      23456


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      ++|++|+|+++++++..+...    ++||++ ++.+|++|+++.+.+.++
T Consensus       226 ~v~v~Dva~a~~~al~~~~~~----~~yni~-~~~~s~~e~~~~i~~~~~  270 (322)
T PLN02986        226 FVDVRDVALAHIKALETPSAN----GRYIID-GPIMSVNDIIDILRELFP  270 (322)
T ss_pred             eeEHHHHHHHHHHHhcCcccC----CcEEEe-cCCCCHHHHHHHHHHHCC
Confidence            899999999999999876432    489995 568999999999999886

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=4.2e-26  Score=188.88  Aligned_cols=225  Identities=17%  Similarity=0.155  Sum_probs=178.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeecccccC
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWASQ  107 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~~~  107 (303)
                      +|||||++|++|+.|++.|.  .+++|++++|..              +|++|++.+.+++++.  |.|||+|+....+.
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~--------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~   65 (281)
T COG1091           2 KILITGANGQLGTELRRALP--GEFEVIATDRAE--------------LDITDPDAVLEVIRETRPDVVINAAAYTAVDK   65 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC--CCceEEeccCcc--------------ccccChHHHHHHHHhhCCCEEEECcccccccc
Confidence            49999999999999999995  678999999885              7999999999999977  46999988777777


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                      ...+++..+.+|..++.++.++|.+.+..++|+|+   ..+|.+.       ...|+.|+++..|.+-   |+++|++.|
T Consensus        66 aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiST---DyVFDG~-------~~~~Y~E~D~~~P~nv---YG~sKl~GE  132 (281)
T COG1091          66 AESEPELAFAVNATGAENLARAAAEVGARLVHIST---DYVFDGE-------KGGPYKETDTPNPLNV---YGRSKLAGE  132 (281)
T ss_pred             ccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeec---ceEecCC-------CCCCCCCCCCCCChhh---hhHHHHHHH
Confidence            77777779999999999999999999888888775   2244333       2568999999877666   999999999


Q ss_pred             Hhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          188 KLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       188 ~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      ..- .. -+..|+|.+++||..++   ++...+.   .+.+ .+.++....      .++..++++.|+|+++..++...
T Consensus       133 ~~v~~~~~~~~I~Rtswv~g~~g~---nFv~tml---~la~-~~~~l~vv~------Dq~gsPt~~~dlA~~i~~ll~~~  199 (281)
T COG1091         133 EAVRAAGPRHLILRTSWVYGEYGN---NFVKTML---RLAK-EGKELKVVD------DQYGSPTYTEDLADAILELLEKE  199 (281)
T ss_pred             HHHHHhCCCEEEEEeeeeecCCCC---CHHHHHH---HHhh-cCCceEEEC------CeeeCCccHHHHHHHHHHHHhcc
Confidence            543 21 68899999999996543   3322221   1111 244555554      67778999999999999988776


Q ss_pred             CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          266 DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       266 ~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ..    +++||+++...+||.|+++.|.+.+|.+.
T Consensus       200 ~~----~~~yH~~~~g~~Swydfa~~I~~~~~~~~  230 (281)
T COG1091         200 KE----GGVYHLVNSGECSWYEFAKAIFEEAGVDG  230 (281)
T ss_pred             cc----CcEEEEeCCCcccHHHHHHHHHHHhCCCc
Confidence            43    24999999999999999999999998554

>PLN02650 dihydroflavonol-4-reductase

Probab=99.95  E-value=1.1e-25  Score=198.74  Aligned_cols=247  Identities=14%  Similarity=0.152  Sum_probs=161.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----c-c----CCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----I-Q----SSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~-~----~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ..++||||||+||||++++++|+ +.|++|++++|+.....    . .    ..+++++.+|+.|.+.+.++++++|.|+
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLL-ERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHH-HCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            35799999999999999999999 68999999999764421    0 0    1257889999999999999999999999


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCC-cCcCCCC------
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRF-YDEECPR------  170 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~-~~e~~~~------  170 (303)
                      |+|+...... .....+.+++|+.++.+++++|.+.. ...++++.|+...|+....      ..+ ++|+...      
T Consensus        83 H~A~~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~r~v~~SS~~~~~~~~~------~~~~~~E~~~~~~~~~~  154 (351)
T PLN02650         83 HVATPMDFES-KDPENEVIKPTVNGMLSIMKACAKAK-TVRRIVFTSSAGTVNVEEH------QKPVYDEDCWSDLDFCR  154 (351)
T ss_pred             EeCCCCCCCC-CCchhhhhhHHHHHHHHHHHHHHhcC-CceEEEEecchhhcccCCC------CCCccCcccCCchhhhh
Confidence            9986532211 11112478999999999999998753 1345555555444432211      112 3443210      


Q ss_pred             CCCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhh
Q 042242          171 VSKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (303)
                      .+..+.+.|+.+|...|.     .... ++++++||+++||++......  ..+........  +.......      ..
T Consensus       155 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~--~~~~~~~~~~~--~~~~~~~~------~~  224 (351)
T PLN02650        155 RKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMP--PSLITALSLIT--GNEAHYSI------IK  224 (351)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCC--ccHHHHHHHhc--CCccccCc------CC
Confidence            011122238988888772     2222 999999999999975432211  11111111111  11111111      11


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      ..++++++|+|++++.++..+...    +.| +++++.+|+.|+++.|++.++
T Consensus       225 ~r~~v~V~Dva~a~~~~l~~~~~~----~~~-i~~~~~~s~~el~~~i~~~~~  272 (351)
T PLN02650        225 QGQFVHLDDLCNAHIFLFEHPAAE----GRY-ICSSHDATIHDLAKMLREKYP  272 (351)
T ss_pred             CcceeeHHHHHHHHHHHhcCcCcC----ceE-EecCCCcCHHHHHHHHHHhCc
Confidence            247899999999999998775432    468 566678999999999999876

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.95  E-value=3.3e-26  Score=199.08  Aligned_cols=223  Identities=10%  Similarity=0.068  Sum_probs=156.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      |+|+|||||||||++++++|+ +.||+|++++|++.+.. ....+++++.+|+.|++++.++++++|.|+|+++...   
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll-~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~---   76 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQAL-DEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP---   76 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC---
Confidence            489999999999999999999 68999999999865432 2235799999999999999999999999999864321   


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                      ..  .....+.|+.++.+++++|++.+  +.++++.|+...+     .+               +..+   |...|...|
T Consensus        77 ~~--~~~~~~~~~~~~~~l~~aa~~~g--vkr~I~~Ss~~~~-----~~---------------~~~~---~~~~K~~~e  129 (317)
T CHL00194         77 SD--LYNAKQIDWDGKLALIEAAKAAK--IKRFIFFSILNAE-----QY---------------PYIP---LMKLKSDIE  129 (317)
T ss_pred             CC--ccchhhhhHHHHHHHHHHHHHcC--CCEEEEecccccc-----cc---------------CCCh---HHHHHHHHH
Confidence            11  12267889999999999999873  4455555431110     00               0123   444444443


Q ss_pred             H-hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          188 K-LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       188 ~-~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      . .... ++++++||+.+|+....       .. ... +.  .+.+....+.     ...+++++++|+|++++.++..+
T Consensus       130 ~~l~~~~l~~tilRp~~~~~~~~~-------~~-~~~-~~--~~~~~~~~~~-----~~~~~~i~v~Dva~~~~~~l~~~  193 (317)
T CHL00194        130 QKLKKSGIPYTIFRLAGFFQGLIS-------QY-AIP-IL--EKQPIWITNE-----STPISYIDTQDAAKFCLKSLSLP  193 (317)
T ss_pred             HHHHHcCCCeEEEeecHHhhhhhh-------hh-hhh-hc--cCCceEecCC-----CCccCccCHHHHHHHHHHHhcCc
Confidence            1 1122 99999999988862110       00 000 11  1234443332     33457899999999999988776


Q ss_pred             CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          266 DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       266 ~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ...+   ++||+++++.+|++|+++.+++.+|++..
T Consensus       194 ~~~~---~~~ni~g~~~~s~~el~~~~~~~~g~~~~  226 (317)
T CHL00194        194 ETKN---KTFPLVGPKSWNSSEIISLCEQLSGQKAK  226 (317)
T ss_pred             cccC---cEEEecCCCccCHHHHHHHHHHHhCCCCe
Confidence            5444   89999999999999999999999998643

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.94  E-value=1.2e-26  Score=198.34  Aligned_cols=230  Identities=20%  Similarity=0.173  Sum_probs=159.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeeccccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWAS  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~~  106 (303)
                      ||||||||+|+||++|.++|. ..|++|+++.|.              ..|+.|.+.+.+.++..  |.|+|+++....+
T Consensus         1 MriLI~GasG~lG~~l~~~l~-~~~~~v~~~~r~--------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~   65 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALK-ERGYEVIATSRS--------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD   65 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHT-TTSEEEEEESTT--------------CS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred             CEEEEECCCCHHHHHHHHHHh-hCCCEEEEeCch--------------hcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence            589999999999999999998 689999999777              37999999999999874  4699998776666


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .+..++...+++|+.++.++.++|...+.+++|+|   +..+|.+.       ...|+.|+++..|.+.   |+.+|...
T Consensus        66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~S---Td~VFdG~-------~~~~y~E~d~~~P~~~---YG~~K~~~  132 (286)
T PF04321_consen   66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHIS---TDYVFDGD-------KGGPYTEDDPPNPLNV---YGRSKLEG  132 (286)
T ss_dssp             HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEE---EGGGS-SS-------TSSSB-TTS----SSH---HHHHHHHH
T ss_pred             hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEee---ccEEEcCC-------cccccccCCCCCCCCH---HHHHHHHH
Confidence            66667777999999999999999998765555554   44577554       2557899998776666   99999999


Q ss_pred             HHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc
Q 042242          187 EKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT  263 (303)
Q Consensus       187 e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~  263 (303)
                      |..   .. -++.|+|++.+||....   ++...+.  ..+  ..+.++....      ..+..+++++|+|+.++.++.
T Consensus       133 E~~v~~~~-~~~~IlR~~~~~g~~~~---~~~~~~~--~~~--~~~~~i~~~~------d~~~~p~~~~dlA~~i~~l~~  198 (286)
T PF04321_consen  133 EQAVRAAC-PNALILRTSWVYGPSGR---NFLRWLL--RRL--RQGEPIKLFD------DQYRSPTYVDDLARVILELIE  198 (286)
T ss_dssp             HHHHHHH--SSEEEEEE-SEESSSSS---SHHHHHH--HHH--HCTSEEEEES------SCEE--EEHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-CCEEEEecceecccCCC---chhhhHH--HHH--hcCCeeEeeC------CceeCCEEHHHHHHHHHHHHH
Confidence            853   12 58999999999996332   2222211  112  2255555555      556678999999999999887


Q ss_pred             CcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          264 NDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       264 ~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      .........++||+++++.+|+.|+++.+++.+|.+.
T Consensus       199 ~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~  235 (286)
T PF04321_consen  199 KNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDP  235 (286)
T ss_dssp             HHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCT
T ss_pred             hcccccccceeEEEecCcccCHHHHHHHHHHHhCCCC
Confidence            7643111136999999999999999999999999876

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.94  E-value=1.2e-25  Score=194.76  Aligned_cols=238  Identities=15%  Similarity=0.078  Sum_probs=162.7

Q ss_pred             EEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeecccc-cCC
Q 042242           32 VIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWA-SQF  108 (303)
Q Consensus        32 lVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~-~~~  108 (303)
                      ||||||||||++|+++|+ ..|++|+++.++.             .+|+.|.+++.++++..  |.|+|+|+.... ...
T Consensus         1 lItGa~GfiG~~l~~~L~-~~g~~v~~~~~~~-------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~   66 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLE-ALGFTNLVLRTHK-------------ELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHAN   66 (306)
T ss_pred             CcccCCCcccHHHHHHHH-hCCCcEEEeeccc-------------cCCCCCHHHHHHHHhccCCCEEEEeeeeecccchh
Confidence            699999999999999999 6788877664332             38999999999998864  679999876322 112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC-CCCc-cchHHHHHHHH
Q 042242          109 ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV-SKSN-NFYYVLEDLLK  186 (303)
Q Consensus       109 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~-p~~~-~~~y~~~k~~~  186 (303)
                      ...+.+.++.|+.++.+++++|++..  +.++++.|+..+|+..       ...|++|+++.. |..| +..|+.+|.+.
T Consensus        67 ~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~i~~SS~~vyg~~-------~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~  137 (306)
T PLN02725         67 MTYPADFIRENLQIQTNVIDAAYRHG--VKKLLFLGSSCIYPKF-------APQPIPETALLTGPPEPTNEWYAIAKIAG  137 (306)
T ss_pred             hhCcHHHHHHHhHHHHHHHHHHHHcC--CCeEEEeCceeecCCC-------CCCCCCHHHhccCCCCCCcchHHHHHHHH
Confidence            22334578999999999999999763  4566666666677543       244677766321 1222 22388877777


Q ss_pred             HH-----hcCC-cceEEecCCceeecCCCCc---cchhhHHHHHHHHhhhCCCceee-CCchhhhhhhcccCccHHHHHH
Q 042242          187 EK-----LAGK-VAWSVHRPGLLLGSSHRSL---YNFLGCLCVYGAVCKHLNLPFVF-GGTREIWEEYCLDGSDSRLVAE  256 (303)
Q Consensus       187 e~-----~~~~-~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~a~  256 (303)
                      |.     .+.. ++++++||+.+||++....   ......+..........+.++.. .++.    .+..++++++|+++
T Consensus       138 e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g----~~~~~~i~v~Dv~~  213 (306)
T PLN02725        138 IKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSG----SPLREFLHVDDLAD  213 (306)
T ss_pred             HHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCC----CeeeccccHHHHHH
Confidence            62     2222 9999999999999764311   11122221111111122444433 4433    45567899999999


Q ss_pred             HHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          257 QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       257 a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +++.++.....    ++.||+++++.+|+.|+++.+++.+|.+.
T Consensus       214 ~~~~~~~~~~~----~~~~ni~~~~~~s~~e~~~~i~~~~~~~~  253 (306)
T PLN02725        214 AVVFLMRRYSG----AEHVNVGSGDEVTIKELAELVKEVVGFEG  253 (306)
T ss_pred             HHHHHHhcccc----CcceEeCCCCcccHHHHHHHHHHHhCCCC
Confidence            99998876432    25799999999999999999999998764

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=5.5e-26  Score=187.83  Aligned_cols=254  Identities=15%  Similarity=0.101  Sum_probs=188.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHHhccC--
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKLTLLE--   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~~--   94 (303)
                      +.++||||||+||||+|.+.+|+ +.||+|.+++.-.....          .+..++.++.+|++|.+.++++|+...  
T Consensus         1 ~~~~VLVtGgaGyiGsht~l~L~-~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd   79 (343)
T KOG1371|consen    1 GGKHVLVTGGAGYIGSHTVLALL-KRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFD   79 (343)
T ss_pred             CCcEEEEecCCcceehHHHHHHH-hCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCc
Confidence            35799999999999999999999 79999999997432211          234689999999999999999999776  


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC-CC
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV-SK  173 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~-p~  173 (303)
                      .|+|.|+......+-..+..+...|+.++.++++.++++.  ...+++.|+..+||.+       ...|+.|++|.. |.
T Consensus        80 ~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~--~~~~V~sssatvYG~p-------~~ip~te~~~t~~p~  150 (343)
T KOG1371|consen   80 AVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN--VKALVFSSSATVYGLP-------TKVPITEEDPTDQPT  150 (343)
T ss_pred             eEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC--CceEEEecceeeecCc-------ceeeccCcCCCCCCC
Confidence            4999988877777777777789999999999999999984  5666666676688666       367899999987 78


Q ss_pred             CccchHHHHHHHHH-----HhcCC-cceEEecCCceeecCCCC---------ccchhhHHHHHHHHhhhC-----CCce-
Q 042242          174 SNNFYYVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRS---------LYNFLGCLCVYGAVCKHL-----NLPF-  232 (303)
Q Consensus       174 ~~~~~y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~-----~~~~-  232 (303)
                      +|   |+.+|...|     ..... +.++++|.++++|..+.-         +.++++ .....++.+..     +.++ 
T Consensus       151 ~p---yg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p-~v~~vaigr~~~l~v~g~d~~  226 (343)
T KOG1371|consen  151 NP---YGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLP-YVFQVAIGRRPNLQVVGRDYT  226 (343)
T ss_pred             Cc---chhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccc-cccchhhcccccceeecCccc
Confidence            88   787776666     33333 889999999999943321         111111 11111122111     2222 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ...|      ....+.+|+.|+|...+.++........- ++||++.+...++.+++..+++++|++.+
T Consensus       227 t~dg------t~vrdyi~v~Dla~~h~~al~k~~~~~~~-~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k  288 (343)
T KOG1371|consen  227 TIDG------TIVRDYIHVLDLADGHVAALGKLRGAAEF-GVYNLGTGKGSSVLELVTAFEKALGVKIK  288 (343)
T ss_pred             ccCC------CeeecceeeEehHHHHHHHhhccccchhe-eeEeecCCCCccHHHHHHHHHHHhcCCCC
Confidence            1122      44566778888899999888776543222 49999999999999999999999999887

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.94  E-value=2.5e-25  Score=193.45  Aligned_cols=246  Identities=12%  Similarity=0.051  Sum_probs=162.0

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh----ccCceeEEeecccc
Q 042242           31 AVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT----LLEDVTHIFWVTWA  105 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~----~~~~V~~~~~~~~~  105 (303)
                      |||||||||||+++++.|+ +.|+ +|++++|..............+..|+.+.+.++.+.+    ++|.|+|+++....
T Consensus         1 ilItGatG~iG~~l~~~L~-~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~   79 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALN-ERGITDILVVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDT   79 (314)
T ss_pred             CEEeCCcchhhHHHHHHHH-HcCCceEEEEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCc
Confidence            6999999999999999999 6787 6988887654322111122356678888877776654    67789999875432


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC-CCCCccchHHHHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR-VSKSNNFYYVLEDL  184 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~-~p~~~~~~y~~~k~  184 (303)
                      .  ..++...+++|+.++.+++++|++...   ++++.|+..+|+..        ..++.|+++. .|.++   |+.+|.
T Consensus        80 ~--~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~v~~SS~~vy~~~--------~~~~~e~~~~~~p~~~---Y~~sK~  143 (314)
T TIGR02197        80 T--ETDGEYMMENNYQYSKRLLDWCAEKGI---PFIYASSAATYGDG--------EAGFREGRELERPLNV---YGYSKF  143 (314)
T ss_pred             c--ccchHHHHHHHHHHHHHHHHHHHHhCC---cEEEEccHHhcCCC--------CCCcccccCcCCCCCH---HHHHHH
Confidence            2  223344789999999999999988643   35555555577543        2235555543 24444   888777


Q ss_pred             HHHH-----h--cCC-cceEEecCCceeecCCCCccchhhHHHH-HHHHhhhCCCceeeCCchhhh--hhhcccCccHHH
Q 042242          185 LKEK-----L--AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCV-YGAVCKHLNLPFVFGGTREIW--EEYCLDGSDSRL  253 (303)
Q Consensus       185 ~~e~-----~--~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~d  253 (303)
                      ..|.     .  ... ++++++||+.+||++..........+.. ...+..  +.++...+....+  ..+..++++++|
T Consensus       144 ~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~i~v~D  221 (314)
T TIGR02197       144 LFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKA--GGNVKLFKSSEGFKDGEQLRDFVYVKD  221 (314)
T ss_pred             HHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhc--CCCeEEecCccccCCCCceeeeEEHHH
Confidence            6662     1  122 7899999999999754321111011111 111222  3333322211000  056678999999


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++++++.++.. . .   +++||+++++++|++|+++.+.+.+|++.
T Consensus       222 ~a~~i~~~~~~-~-~---~~~yni~~~~~~s~~e~~~~i~~~~g~~~  263 (314)
T TIGR02197       222 VVDVNLWLLEN-G-V---SGIFNLGTGRARSFNDLADAVFKALGKDE  263 (314)
T ss_pred             HHHHHHHHHhc-c-c---CceEEcCCCCCccHHHHHHHHHHHhCCCC
Confidence            99999988876 2 2   26999999999999999999999999764

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN02686 cinnamoyl-CoA reductase

Probab=99.94  E-value=2e-25  Score=197.53  Aligned_cols=258  Identities=14%  Similarity=0.142  Sum_probs=165.8

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-c-c----------CCCeEEEEecCCCHHHHHHHH
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-I-Q----------SSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~-~----------~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      ....++|+||||||+||||++++++|+ ..||+|+++.|+..... . .          ..+++++.+|++|.+.+.+++
T Consensus        48 ~~~~~~k~VLVTGatGfIG~~lv~~L~-~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i  126 (367)
T PLN02686         48 GADAEARLVCVTGGVSFLGLAIVDRLL-RHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF  126 (367)
T ss_pred             ccCCCCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence            345567899999999999999999999 68999999888754321 0 0          125788999999999999999


Q ss_pred             hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecc--cccccccCCCcccccCCcCcCC
Q 042242           91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM--KHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        91 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~--~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      ++++.|+|+++...............+.|+.++.+++++|+... .+.++++.|+.  .+|+......   ...+++|+.
T Consensus       127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~-~v~r~V~~SS~~~~vyg~~~~~~---~~~~i~E~~  202 (367)
T PLN02686        127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTE-SVRKCVFTSSLLACVWRQNYPHD---LPPVIDEES  202 (367)
T ss_pred             HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcC-CccEEEEeccHHHhcccccCCCC---CCcccCCCC
Confidence            99988899976532221100111256889999999999998741 24455555542  3554210000   011234433


Q ss_pred             CCC---CCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRV---SKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~---p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      ...   +..|...|+.+|...|.     .... ++++++||++|||++.......  ..  . ...+  +. ..+.|+. 
T Consensus       203 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~--~~--~-~~~~--g~-~~~~g~g-  273 (367)
T PLN02686        203 WSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNST--AT--I-AYLK--GA-QEMLADG-  273 (367)
T ss_pred             CCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCCh--hH--H-HHhc--CC-CccCCCC-
Confidence            211   11222238988887773     2323 9999999999999754321110  11  1 1111  22 1222321 


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                           ..+++|++|+|++++.++..+... ..+++| +++++.++++|+++.+++.+|.+.+
T Consensus       274 -----~~~~v~V~Dva~A~~~al~~~~~~-~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~  328 (367)
T PLN02686        274 -----LLATADVERLAEAHVCVYEAMGNK-TAFGRY-ICFDHVVSREDEAEELARQIGLPIN  328 (367)
T ss_pred             -----CcCeEEHHHHHHHHHHHHhccCCC-CCCCcE-EEeCCCccHHHHHHHHHHHcCCCCC
Confidence                 124788999999999988753110 123678 8888999999999999999997643

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=6.5e-26  Score=183.16  Aligned_cols=245  Identities=15%  Similarity=0.051  Sum_probs=177.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc------cccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT------AIQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~------~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +..+++|+||||.||||++|+..|. ..||+|++++.--...      +...+.++.+.-|+..     .++.++|.|+|
T Consensus        24 p~~~lrI~itGgaGFIgSHLvdkLm-~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~-----pl~~evD~Iyh   97 (350)
T KOG1429|consen   24 PSQNLRILITGGAGFIGSHLVDKLM-TEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVE-----PLLKEVDQIYH   97 (350)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHH-hcCCeEEEEecccccchhhcchhccCcceeEEEeechh-----HHHHHhhhhhh
Confidence            4456899999999999999999999 6889999999643321      2345667777777755     58888899999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC--CCCCcc
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR--VSKSNN  176 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~--~p~~~~  176 (303)
                      +|+.+.....-.++.+.+.+|..++.+++..|++..+++   .+.|++.+|+.+       -..|..|+.-.  .|..|.
T Consensus        98 LAapasp~~y~~npvktIktN~igtln~lglakrv~aR~---l~aSTseVYgdp-------~~hpq~e~ywg~vnpigpr  167 (350)
T KOG1429|consen   98 LAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARF---LLASTSEVYGDP-------LVHPQVETYWGNVNPIGPR  167 (350)
T ss_pred             hccCCCCcccccCccceeeecchhhHHHHHHHHHhCceE---EEeecccccCCc-------ccCCCccccccccCcCCch
Confidence            988877666666666789999999999999999876544   444444577554       24445554422  234556


Q ss_pred             chHHHHHHHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCcc
Q 042242          177 FYYVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       177 ~~y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (303)
                      ..|...|.+.|     +.+.. +.+.|.|++++|||.-...  -....+.+.. ..-.+.|+.+.|++.    +-..++.
T Consensus       168 ~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~--dgrvvsnf~~-q~lr~epltv~g~G~----qtRSF~y  240 (350)
T KOG1429|consen  168 SCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMD--DGRVVSNFIA-QALRGEPLTVYGDGK----QTRSFQY  240 (350)
T ss_pred             hhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccC--CChhhHHHHH-HHhcCCCeEEEcCCc----ceEEEEe
Confidence            66888888887     33333 9999999999999643322  1223333322 222367777777664    4455677


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      +.|++++++.++.++..     +.+||++++.+|+.|+++.+.+..|
T Consensus       241 vsD~Vegll~Lm~s~~~-----~pvNiGnp~e~Tm~elAemv~~~~~  282 (350)
T KOG1429|consen  241 VSDLVEGLLRLMESDYR-----GPVNIGNPGEFTMLELAEMVKELIG  282 (350)
T ss_pred             HHHHHHHHHHHhcCCCc-----CCcccCCccceeHHHHHHHHHHHcC
Confidence            77889999999988865     4599999999999999999998874

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.94  E-value=4.5e-25  Score=194.92  Aligned_cols=258  Identities=14%  Similarity=0.163  Sum_probs=164.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      .+++||||||+||||++++++|+ ..|++|++++|+..+..      ....+++++.+|+.+.+.+.++++++|.|+|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLL-QRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            45799999999999999999999 68999999998764321      012468899999999999999999888899998


Q ss_pred             ecccccC--ChHHH-----HHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC--
Q 042242          101 WVTWASQ--FASDM-----HKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV--  171 (303)
Q Consensus       101 ~~~~~~~--~~~~~-----~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~--  171 (303)
                      +......  ...++     ...++.|+.++.+++++|.+.. ...++++.|+..+|+.... .|. ...+++|+.+..  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~-~~~~~v~~SS~~vyg~~~~-~~~-~~~~~~E~~~~p~~  164 (353)
T PLN02896         88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK-TVKRVVFTSSISTLTAKDS-NGR-WRAVVDETCQTPID  164 (353)
T ss_pred             ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC-CccEEEEEechhhcccccc-CCC-CCCccCcccCCcHH
Confidence            7643221  11122     1245666799999999998752 2446666666667754311 000 012345542110  


Q ss_pred             ----CCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC--Cchh
Q 042242          172 ----SKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG--GTRE  239 (303)
Q Consensus       172 ----p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~  239 (303)
                          +..+.+.|+.+|.+.|.     .+.. ++++++||++|||++.....+.  .+........  +.+..++  +...
T Consensus       165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~--~~~~~~~~~~--g~~~~~~~~~~~~  240 (353)
T PLN02896        165 HVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPS--SIQVLLSPIT--GDSKLFSILSAVN  240 (353)
T ss_pred             HhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCc--hHHHHHHHhc--CCccccccccccc
Confidence                01122239998888873     2222 9999999999999754322111  1111111111  2111111  1111


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      .. ..-.+++|++|+|++++.++..+..    ++.|+ +++...|+.|+++.+++.++.
T Consensus       241 ~~-~~~~dfi~v~Dva~a~~~~l~~~~~----~~~~~-~~~~~~s~~el~~~i~~~~~~  293 (353)
T PLN02896        241 SR-MGSIALVHIEDICDAHIFLMEQTKA----EGRYI-CCVDSYDMSELINHLSKEYPC  293 (353)
T ss_pred             cc-cCceeEEeHHHHHHHHHHHHhCCCc----CccEE-ecCCCCCHHHHHHHHHHhCCC
Confidence            00 1124789999999999998876432    24685 456789999999999998873

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.94  E-value=2.4e-25  Score=180.19  Aligned_cols=237  Identities=16%  Similarity=0.139  Sum_probs=170.3

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCC-CeEEEEecCCCHHHHHHHHh-ccCceeEEeecccccC-
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSS-SYCFISCDLLNPLDIKRKLT-LLEDVTHIFWVTWASQ-  107 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~D~~~~~~l~~~~~-~~~~V~~~~~~~~~~~-  107 (303)
                      |+|||||||||++|+.+|. ..||+|++++|++++...... .++       ..+.+.+... ++|+|||+|+.+...+ 
T Consensus         1 IliTGgTGlIG~~L~~~L~-~~gh~v~iltR~~~~~~~~~~~~v~-------~~~~~~~~~~~~~DavINLAG~~I~~rr   72 (297)
T COG1090           1 ILITGGTGLIGRALTARLR-KGGHQVTILTRRPPKASQNLHPNVT-------LWEGLADALTLGIDAVINLAGEPIAERR   72 (297)
T ss_pred             CeEeccccchhHHHHHHHH-hCCCeEEEEEcCCcchhhhcCcccc-------ccchhhhcccCCCCEEEECCCCcccccc
Confidence            6899999999999999998 789999999999887542111 111       2233444444 6899999988776554 


Q ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc--cchHHHHHH
Q 042242          108 -FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN--NFYYVLEDL  184 (303)
Q Consensus       108 -~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~--~~~y~~~k~  184 (303)
                       +........+..+..|..++++..+...+...+++.|....|+.+       .+..++|+++.. ...  ...+..|+.
T Consensus        73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~-------~~~~~tE~~~~g-~~Fla~lc~~WE~~  144 (297)
T COG1090          73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHS-------GDRVVTEESPPG-DDFLAQLCQDWEEE  144 (297)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCC-------CceeeecCCCCC-CChHHHHHHHHHHH
Confidence             344455688999999999999999776677777776666566554       366788886543 222  223444555


Q ss_pred             HHHHhc-CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc
Q 042242          185 LKEKLA-GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT  263 (303)
Q Consensus       185 ~~e~~~-~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~  263 (303)
                      ....+. + .+++++|.|+|.|+..+....+.+.+      ....|.+   -|++    +++++++|++|+++++.+++.
T Consensus       145 a~~a~~~g-tRvvllRtGvVLs~~GGaL~~m~~~f------k~glGG~---~GsG----rQ~~SWIhieD~v~~I~fll~  210 (297)
T COG1090         145 ALQAQQLG-TRVVLLRTGVVLSPDGGALGKMLPLF------KLGLGGK---LGSG----RQWFSWIHIEDLVNAILFLLE  210 (297)
T ss_pred             HhhhhhcC-ceEEEEEEEEEecCCCcchhhhcchh------hhccCCc---cCCC----CceeeeeeHHHHHHHHHHHHh
Confidence            555443 4 89999999999996554322221121      1112333   2222    788999999999999999999


Q ss_pred             CcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          264 NDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       264 ~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +....|    .||++.|.+++.+++.+++++++++|..
T Consensus       211 ~~~lsG----p~N~taP~PV~~~~F~~al~r~l~RP~~  244 (297)
T COG1090         211 NEQLSG----PFNLTAPNPVRNKEFAHALGRALHRPAI  244 (297)
T ss_pred             CcCCCC----cccccCCCcCcHHHHHHHHHHHhCCCcc
Confidence            987764    8999999999999999999999998864

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.94  E-value=1.9e-24  Score=188.96  Aligned_cols=257  Identities=16%  Similarity=0.124  Sum_probs=170.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---cc---CCCeEEEEecCCCHHHHHHHHh--ccCceeEEee
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQ---SSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFW  101 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~---~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~  101 (303)
                      +||||||||+||+++++.|+ +.|++|++++|......   ..   ..+++.+.+|+.+.+++.++++  .+|.|+|+++
T Consensus         1 kvlV~GatG~iG~~l~~~l~-~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLL-ESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHH-hCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence            58999999999999999999 68999998876433211   10   1156788999999999999987  4567999976


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVL  181 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~  181 (303)
                      ............+.++.|+.++.+++++|.+..  ..++++.|+...|+..       ...+++|+++..|..+   |+.
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~ss~~~~g~~-------~~~~~~e~~~~~~~~~---y~~  147 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG--VKKFIFSSSAAVYGEP-------SSIPISEDSPLGPINP---YGR  147 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC--CCEEEEecchhhcCCC-------CCCCccccCCCCCCCc---hHH
Confidence            543322222334478999999999999998763  3456666665566433       1335778777665566   887


Q ss_pred             HHHHHH-----HhcC-C-cceEEecCCceeecCCCCcc----chhhHHHH-HHHHhhhCCCceeeCCch---hhhhhhcc
Q 042242          182 EDLLKE-----KLAG-K-VAWSVHRPGLLLGSSHRSLY----NFLGCLCV-YGAVCKHLNLPFVFGGTR---EIWEEYCL  246 (303)
Q Consensus       182 ~k~~~e-----~~~~-~-~~~~ilRp~~v~G~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~g~~---~~~~~~~~  246 (303)
                      +|...|     +... . ++++++||+.+||+.+....    .....+.. ......+...++...|..   ... ....
T Consensus       148 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~  226 (328)
T TIGR01179       148 SKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDG-TCVR  226 (328)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCC-ceEE
Confidence            776665     2222 3 99999999999997532110    00011111 111211112233222211   000 3456


Q ss_pred             cCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          247 DGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       247 ~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++++++|+|++++.++...... ..+++||+++++++|++|+++.+++.+|++.+
T Consensus       227 ~~v~~~D~a~~~~~~~~~~~~~-~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~  280 (328)
T TIGR01179       227 DYIHVMDLADAHLAALEYLLNG-GESHVYNLGYGQGFSVLEVIEAFKKVSGVDFP  280 (328)
T ss_pred             eeeeHHHHHHHHHHHHhhhhcC-CCcceEEcCCCCcccHHHHHHHHHHHhCCCcc
Confidence            7899999999998887642211 22479999999999999999999999998764

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.2e-24  Score=207.37  Aligned_cols=250  Identities=18%  Similarity=0.195  Sum_probs=163.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhh-cCCCeEEEEecCCccccc-------cCCCeEEEEecCCCH------HHHHHHHhccC
Q 042242           29 NVAVIFGVTGLVGKELARRLIS-TANWKVYGIARKPEITAI-------QSSSYCFISCDLLNP------LDIKRKLTLLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~-~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~------~~l~~~~~~~~   94 (303)
                      ++|||||||||||++|+++|++ ..|++|++++|++.....       ...+++++.+|+.|+      +.+.++ +++|
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D   79 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-GDID   79 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-cCCC
Confidence            3799999999999999999983 378999999997543211       125789999999984      345554 7888


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      .|||+++........   .+..+.|+.++.+++++|++. .+++++   +|+..+|+..        ..+..|++...+.
T Consensus        80 ~Vih~Aa~~~~~~~~---~~~~~~nv~gt~~ll~~a~~~~~~~~v~---~SS~~v~g~~--------~~~~~e~~~~~~~  145 (657)
T PRK07201         80 HVVHLAAIYDLTADE---EAQRAANVDGTRNVVELAERLQAATFHH---VSSIAVAGDY--------EGVFREDDFDEGQ  145 (657)
T ss_pred             EEEECceeecCCCCH---HHHHHHHhHHHHHHHHHHHhcCCCeEEE---EeccccccCc--------cCccccccchhhc
Confidence            899998754333222   236899999999999999986 444444   4444466432        1223343322111


Q ss_pred             CccchHHHHHHHHHHh-c-CC-cceEEecCCceeecCCCCccch-hhHHHHHHHHhhhCCCc--eeeCCchhhhhhhccc
Q 042242          174 SNNFYYVLEDLLKEKL-A-GK-VAWSVHRPGLLLGSSHRSLYNF-LGCLCVYGAVCKHLNLP--FVFGGTREIWEEYCLD  247 (303)
Q Consensus       174 ~~~~~y~~~k~~~e~~-~-~~-~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~  247 (303)
                      .+...|+.+|...|.. . .. ++++++||+.|||+........ ......+..+.+....+  +...+..    ....+
T Consensus       146 ~~~~~Y~~sK~~~E~~~~~~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  221 (657)
T PRK07201        146 GLPTPYHRTKFEAEKLVREECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPD----GGRTN  221 (657)
T ss_pred             CCCCchHHHHHHHHHHHHHcCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCC----CCeee
Confidence            1112288888887732 1 22 9999999999999653211110 00111111111111111  1111111    33457


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +++++|++.+++.++..+...   |++||+++++++|+.|+++.+++.+|.+.
T Consensus       222 ~v~vddva~ai~~~~~~~~~~---g~~~ni~~~~~~s~~el~~~i~~~~g~~~  271 (657)
T PRK07201        222 IVPVDYVADALDHLMHKDGRD---GQTFHLTDPKPQRVGDIYNAFARAAGAPP  271 (657)
T ss_pred             eeeHHHHHHHHHHHhcCcCCC---CCEEEeCCCCCCcHHHHHHHHHHHhCCCc
Confidence            889999999999888765443   48999999999999999999999999876

>PLN02583 cinnamoyl-CoA reductase

Probab=99.93  E-value=1.8e-24  Score=186.52  Aligned_cols=240  Identities=15%  Similarity=0.103  Sum_probs=159.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c--cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I--QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +++|+|||||||||++++++|+ +.||+|++++|+.....       .  ...+++++.+|++|.+++.+++.+++.|+|
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll-~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~   84 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLL-SRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC   84 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            5799999999999999999999 68999999998643211       1  123688899999999999999999988888


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccc-cccCCCcccccCCcCcCCCCCCCC---
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYV-SLQGLPEEKQVRFYDEECPRVSKS---  174 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~-~~~~~~g~~~~~~~~e~~~~~p~~---  174 (303)
                      ++........  ...+.+++|+.++.+++++|.+.. .+.+++++|+...+. .... .+  ...+++|+++..+.+   
T Consensus        85 ~~~~~~~~~~--~~~~~~~~nv~gt~~ll~aa~~~~-~v~riV~~SS~~a~~~~~~~-~~--~~~~~~E~~~~~~~~~~~  158 (297)
T PLN02583         85 CFDPPSDYPS--YDEKMVDVEVRAAHNVLEACAQTD-TIEKVVFTSSLTAVIWRDDN-IS--TQKDVDERSWSDQNFCRK  158 (297)
T ss_pred             eCccCCcccc--cHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEecchHheeccccc-CC--CCCCCCcccCCCHHHHhh
Confidence            7543221111  223489999999999999998752 234555555433321 1000 00  123466655432111   


Q ss_pred             ccchHHHHHHHHHHh-----cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC
Q 042242          175 NNFYYVLEDLLKEKL-----AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       175 ~~~~y~~~k~~~e~~-----~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                      +...|+.+|.+.|..     +.. ++++++||+.|||++.....    ..     +.   +.+...+       .....+
T Consensus       159 ~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~----~~-----~~---~~~~~~~-------~~~~~~  219 (297)
T PLN02583        159 FKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN----PY-----LK---GAAQMYE-------NGVLVT  219 (297)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch----hh-----hc---CCcccCc-------ccCcce
Confidence            111388888887732     222 99999999999997543211    10     00   1111111       122358


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      +|++|+|++++.+++.+...    +.|+++++....+.++++.+.+.+.
T Consensus       220 v~V~Dva~a~~~al~~~~~~----~r~~~~~~~~~~~~~~~~~~~~~~p  264 (297)
T PLN02583        220 VDVNFLVDAHIRAFEDVSSY----GRYLCFNHIVNTEEDAVKLAQMLSP  264 (297)
T ss_pred             EEHHHHHHHHHHHhcCcccC----CcEEEecCCCccHHHHHHHHHHhCC
Confidence            99999999999999876443    4798888777778889999988764

>PLN02996 fatty acyl-CoA reductase

Probab=99.93  E-value=2e-24  Score=197.01  Aligned_cols=261  Identities=13%  Similarity=0.092  Sum_probs=168.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhc-CCC-eEEEEecCCcccc----c------------------------cCCCeEEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIST-ANW-KVYGIARKPEITA----I------------------------QSSSYCFI   76 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~-~g~-~V~~~~r~~~~~~----~------------------------~~~~~~~~   76 (303)
                      .+|+|||||||||||++|++.|++. ... +|+++.|.+....    .                        ...+++++
T Consensus        10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i   89 (491)
T PLN02996         10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV   89 (491)
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence            5789999999999999999999832 233 5899999764211    0                        01578999


Q ss_pred             EecCC-------CHHHHHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccccc
Q 042242           77 SCDLL-------NPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHY  149 (303)
Q Consensus        77 ~~D~~-------~~~~l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y  149 (303)
                      .+|++       +.+.++++++++|.|+|+|+......   +.....+.|+.++.+++++|+.. ..+.++++.|+..+|
T Consensus        90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~~a~~~-~~~k~~V~vST~~vy  165 (491)
T PLN02996         90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDE---RYDVALGINTLGALNVLNFAKKC-VKVKMLLHVSTAYVC  165 (491)
T ss_pred             ecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcC---CHHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEeeeEEe
Confidence            99998       44557778888889999987654322   23447899999999999999874 224455555565677


Q ss_pred             ccccCCCcccccCCcCcC--------------------------------------------CCC-CCCCccchHHHHHH
Q 042242          150 VSLQGLPEEKQVRFYDEE--------------------------------------------CPR-VSKSNNFYYVLEDL  184 (303)
Q Consensus       150 ~~~~~~~g~~~~~~~~e~--------------------------------------------~~~-~p~~~~~~y~~~k~  184 (303)
                      +......   .+.++.+.                                            .+. ....|+ -|+.+|.
T Consensus       166 G~~~~~i---~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn-~Y~~TK~  241 (491)
T PLN02996        166 GEKSGLI---LEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPN-TYVFTKA  241 (491)
T ss_pred             cCCCcee---eeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCC-chHhhHH
Confidence            5432110   01111100                                            000 001222 2888888


Q ss_pred             HHHH-----hcCCcceEEecCCceeecCCCCccchhhHHHHHHH--HhhhCCCceeeCCchhhhhhhcccCccHHHHHHH
Q 042242          185 LKEK-----LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA--VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQ  257 (303)
Q Consensus       185 ~~e~-----~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a  257 (303)
                      +.|.     ..+ ++++++||++|||+.......+...+.....  .....+....+.|++    .+..++++++|++.+
T Consensus       242 ~aE~lv~~~~~~-lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg----~~~~D~v~Vddvv~a  316 (491)
T PLN02996        242 MGEMLLGNFKEN-LPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADP----NSVLDVIPADMVVNA  316 (491)
T ss_pred             HHHHHHHHhcCC-CCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCC----CeecceecccHHHHH
Confidence            8883     223 9999999999999753221111111110001  111224444444543    677889999999999


Q ss_pred             HHHHhcCcCCcCCCCceEEeecC--CCccHHhhHHHHHHHhcccC
Q 042242          258 HIWVATNDDISSTKGQAFNAING--PRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       258 ~~~~~~~~~~~~~~g~~yni~~~--~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++.++.........+++||++++  .++|+.|+++.+.+.++.-+
T Consensus       317 ~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p  361 (491)
T PLN02996        317 MIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP  361 (491)
T ss_pred             HHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence            99887653110012479999988  78999999999999887544

>PLN00016 RNA-binding protein; Provisional

Probab=99.93  E-value=1.5e-24  Score=193.05  Aligned_cols=229  Identities=17%  Similarity=0.158  Sum_probs=158.3

Q ss_pred             CCCCCEEEEE----cCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------------ccCCCeEEEEecCCCHHHHHH
Q 042242           25 VDAKNVAVIF----GVTGLVGKELARRLISTANWKVYGIARKPEITA------------IQSSSYCFISCDLLNPLDIKR   88 (303)
Q Consensus        25 ~~~~~~vlVt----GatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~D~~~~~~l~~   88 (303)
                      ..++++||||    |||||||++|+++|+ +.||+|++++|++....            ....+++++.+|+.|   +.+
T Consensus        49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~-~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~  124 (378)
T PLN00016         49 AVEKKKVLIVNTNSGGHAFIGFYLAKELV-KAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKS  124 (378)
T ss_pred             ccccceEEEEeccCCCceeEhHHHHHHHH-HCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHh
Confidence            3456899999    999999999999999 68999999999875421            012358899999987   444


Q ss_pred             HH--hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           89 KL--TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        89 ~~--~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      ++  .++|.|+|++..                +..++.+++++|++.+  +.++++.|+..+|+...       ..|..|
T Consensus       125 ~~~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~g--vkr~V~~SS~~vyg~~~-------~~p~~E  179 (378)
T PLN00016        125 KVAGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPG--LKQFLFCSSAGVYKKSD-------EPPHVE  179 (378)
T ss_pred             hhccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcC--CCEEEEEccHhhcCCCC-------CCCCCC
Confidence            44  356668887431                1235678999998763  55677766666775431       335666


Q ss_pred             CCCCCCCCccchHHHHHHHHHHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCL  246 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  246 (303)
                      +++..|..  .+...|.++.+  .+ ++++++||+.+||++....  ....  .+..+..  +.++.++|..    .+..
T Consensus       180 ~~~~~p~~--sK~~~E~~l~~--~~-l~~~ilRp~~vyG~~~~~~--~~~~--~~~~~~~--~~~i~~~g~g----~~~~  244 (378)
T PLN00016        180 GDAVKPKA--GHLEVEAYLQK--LG-VNWTSFRPQYIYGPGNNKD--CEEW--FFDRLVR--GRPVPIPGSG----IQLT  244 (378)
T ss_pred             CCcCCCcc--hHHHHHHHHHH--cC-CCeEEEeceeEECCCCCCc--hHHH--HHHHHHc--CCceeecCCC----Ceee
Confidence            66544322  23444444432  24 9999999999999754321  1111  1112222  4555555543    4556


Q ss_pred             cCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          247 DGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       247 ~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +++|++|+|++++.++.++...+   ++||+++++.+|+.|+++.+++++|++.
T Consensus       245 ~~i~v~Dva~ai~~~l~~~~~~~---~~yni~~~~~~s~~el~~~i~~~~g~~~  295 (378)
T PLN00016        245 QLGHVKDLASMFALVVGNPKAAG---QIFNIVSDRAVTFDGMAKACAKAAGFPE  295 (378)
T ss_pred             ceecHHHHHHHHHHHhcCccccC---CEEEecCCCccCHHHHHHHHHHHhCCCC
Confidence            78899999999999988765433   8999999999999999999999999865

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.93  E-value=2.9e-24  Score=184.05  Aligned_cols=253  Identities=17%  Similarity=0.123  Sum_probs=170.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc--c-----cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA--I-----QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~--~-----~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++||||+||+|++|+++|++.. ..+|++++..+....  .     ....++++++|+.|...+..+++++ .|+|+
T Consensus         4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh~   82 (361)
T KOG1430|consen    4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVHC   82 (361)
T ss_pred             CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEEe
Confidence            4699999999999999999999433 488999999886422  1     1567899999999999999999999 78888


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchH
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYY  179 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y  179 (303)
                      ++.........+.....++|+.||.+++++|++.+  +.+++++|+..++.+...      ....+|+.|.. ....-.|
T Consensus        83 aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~--v~~lIYtSs~~Vvf~g~~------~~n~~E~~p~p-~~~~d~Y  153 (361)
T KOG1430|consen   83 AASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG--VKRLIYTSSAYVVFGGEP------IINGDESLPYP-LKHIDPY  153 (361)
T ss_pred             ccccCccccccchhhheeecchhHHHHHHHHHHhC--CCEEEEecCceEEeCCee------cccCCCCCCCc-ccccccc
Confidence            77766555443444488999999999999999883  455666665545433221      12234444332 2111127


Q ss_pred             HHHHHHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          180 VLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       180 ~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      ..+|..+|     ...+. +.++++||+.|||++.......+..   .  +..  +.....-|..    ..+.+++.++.
T Consensus       154 ~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~---~--~~~--g~~~f~~g~~----~~~~~~~~~~N  222 (361)
T KOG1430|consen  154 GESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVE---A--LKN--GGFLFKIGDG----ENLNDFTYGEN  222 (361)
T ss_pred             chHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHH---H--HHc--cCceEEeecc----ccccceEEech
Confidence            77776666     33234 9999999999999876543222111   1  111  2222223332    34455666666


Q ss_pred             HHHHHHHHhcCc--CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          254 VAEQHIWVATND--DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       254 ~a~a~~~~~~~~--~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +|.+++.+...-  ......|+.|+|+++.++...+++..+.+.+|.+.|
T Consensus       223 va~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~  272 (361)
T KOG1430|consen  223 VAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLP  272 (361)
T ss_pred             hHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCC
Confidence            666666543211  111145799999999998888888899999998876

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.3e-24  Score=173.43  Aligned_cols=250  Identities=13%  Similarity=0.109  Sum_probs=188.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhh-cCCCeEEEEecCC---c-cc---cccCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLIS-TANWKVYGIARKP---E-IT---AIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~-~~g~~V~~~~r~~---~-~~---~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      ++|+||||+||||++.+..+.. -..+..+.++.-.   . +.   ....++..++++|+.+...+.-.+..  +|.|+|
T Consensus         7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih   86 (331)
T KOG0747|consen    7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH   86 (331)
T ss_pred             ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence            7999999999999999999982 2456666665411   1 10   12357899999999999888777754  445999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      .|+..+...+.-++.++...|+.++..++++++..+ ++.+++.+|+..+||.+.+      .....|.++..|.+|   
T Consensus        87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg-~i~~fvhvSTdeVYGds~~------~~~~~E~s~~nPtnp---  156 (331)
T KOG0747|consen   87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSG-NIRRFVHVSTDEVYGDSDE------DAVVGEASLLNPTNP---  156 (331)
T ss_pred             hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhcc-CeeEEEEecccceecCccc------cccccccccCCCCCc---
Confidence            988888877777777899999999999999999764 6788888888889988754      222338888899999   


Q ss_pred             HHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHH
Q 042242          179 YVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSR  252 (303)
Q Consensus       179 y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  252 (303)
                      |+.+|..+|+     .... ++++++|.++||||+... ..   .+..|..+... +.+....|.+    .++..+.+++
T Consensus       157 yAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~-~k---lipkFi~l~~~-~~~~~i~g~g----~~~rs~l~ve  227 (331)
T KOG0747|consen  157 YAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYP-EK---LIPKFIKLAMR-GKEYPIHGDG----LQTRSYLYVE  227 (331)
T ss_pred             hHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcCh-HH---HhHHHHHHHHh-CCCcceecCc----ccceeeEeHH
Confidence            9999988882     2223 999999999999976542 22   22233333222 4455555555    5667778888


Q ss_pred             HHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          253 LVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       253 d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      |+++++-.++... .   .|++|||+.+.+++..|+++.+.+.+.+..+
T Consensus       228 D~~ea~~~v~~Kg-~---~geIYNIgtd~e~~~~~l~k~i~eli~~~~~  272 (331)
T KOG0747|consen  228 DVSEAFKAVLEKG-E---LGEIYNIGTDDEMRVIDLAKDICELFEKRLP  272 (331)
T ss_pred             HHHHHHHHHHhcC-C---ccceeeccCcchhhHHHHHHHHHHHHHHhcc
Confidence            8898888887773 2   3499999999999999999999999887554

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.93  E-value=8.1e-24  Score=182.07  Aligned_cols=238  Identities=16%  Similarity=0.108  Sum_probs=154.0

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc--CC
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS--QF  108 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~--~~  108 (303)
                      |||||||||||+++++.|+ +.|++|++++|++.+..... ...  ..|+.. ..+.+.+.++|.|+|+++.....  ..
T Consensus         1 vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~~~~~   75 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLT-KDGHEVTILTRSPPAGANTK-WEG--YKPWAP-LAESEALEGADAVINLAGEPIADKRWT   75 (292)
T ss_pred             CEEEcccchhhHHHHHHHH-HcCCEEEEEeCCCCCCCccc-cee--eecccc-cchhhhcCCCCEEEECCCCCcccccCC
Confidence            6999999999999999999 68999999999876532111 011  122222 44556778888899998754322  22


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHH-----HH
Q 042242          109 ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVL-----ED  183 (303)
Q Consensus       109 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~-----~k  183 (303)
                      .....+.++.|+.++++++++|++.+.+..++++.|+...|+..       ...++.|+.+..+...   |..     +.
T Consensus        76 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~-------~~~~~~E~~~~~~~~~---~~~~~~~~e~  145 (292)
T TIGR01777        76 EERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTS-------EDRVFTEEDSPAGDDF---LAELCRDWEE  145 (292)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCC-------CCCCcCcccCCCCCCh---HHHHHHHHHH
Confidence            23344578899999999999999874332344444444456432       1345777764432222   322     22


Q ss_pred             HHHHHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc
Q 042242          184 LLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT  263 (303)
Q Consensus       184 ~~~e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~  263 (303)
                      .+....+..++++++||+.+||+..+.    ...+...  .....+.+   .|..    ..+.++++++|+|+++..++.
T Consensus       146 ~~~~~~~~~~~~~ilR~~~v~G~~~~~----~~~~~~~--~~~~~~~~---~g~~----~~~~~~i~v~Dva~~i~~~l~  212 (292)
T TIGR01777       146 AAQAAEDLGTRVVLLRTGIVLGPKGGA----LAKMLPP--FRLGLGGP---LGSG----RQWFSWIHIEDLVQLILFALE  212 (292)
T ss_pred             HhhhchhcCCceEEEeeeeEECCCcch----hHHHHHH--HhcCcccc---cCCC----CcccccEeHHHHHHHHHHHhc
Confidence            222122111999999999999974321    1111111  11111112   1221    566788999999999999987


Q ss_pred             CcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          264 NDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       264 ~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      .+...    ++||+++++.+|++|+++.|++.+|++.
T Consensus       213 ~~~~~----g~~~~~~~~~~s~~di~~~i~~~~g~~~  245 (292)
T TIGR01777       213 NASIS----GPVNATAPEPVRNKEFAKALARALHRPA  245 (292)
T ss_pred             CcccC----CceEecCCCccCHHHHHHHHHHHhCCCC
Confidence            75432    5899999999999999999999999764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.92  E-value=1.1e-23  Score=187.62  Aligned_cols=225  Identities=15%  Similarity=0.093  Sum_probs=156.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhc----c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTL----L   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~----~   93 (303)
                      ++++|+|||||||||++++++|+ +.||+|++++|+..+..         ...++++++++|++|.+++.+++++    +
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll-~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~  137 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELV-RRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV  137 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            46799999999999999999999 68999999999865321         1135789999999999999999984    6


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      |.|+|+++.....  ..   +.+++|+.++.++++++++.+  ..+++++|+..+|.                     |.
T Consensus       138 D~Vi~~aa~~~~~--~~---~~~~vn~~~~~~ll~aa~~~g--v~r~V~iSS~~v~~---------------------p~  189 (390)
T PLN02657        138 DVVVSCLASRTGG--VK---DSWKIDYQATKNSLDAGREVG--AKHFVLLSAICVQK---------------------PL  189 (390)
T ss_pred             cEEEECCccCCCC--Cc---cchhhHHHHHHHHHHHHHHcC--CCEEEEEeeccccC---------------------cc
Confidence            7788876532211  11   246789999999999998763  34555554432220                     11


Q ss_pred             CccchHHHHHHHHH--Hhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          174 SNNFYYVLEDLLKE--KLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       174 ~~~~~y~~~k~~~e--~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                      .+   |...|...|  ... .. ++++|+||+.+||...        .  ....+.  .+.++.+.|++.   .....++
T Consensus       190 ~~---~~~sK~~~E~~l~~~~~gl~~tIlRp~~~~~~~~--------~--~~~~~~--~g~~~~~~GdG~---~~~~~~I  251 (390)
T PLN02657        190 LE---FQRAKLKFEAELQALDSDFTYSIVRPTAFFKSLG--------G--QVEIVK--DGGPYVMFGDGK---LCACKPI  251 (390)
T ss_pred             hH---HHHHHHHHHHHHHhccCCCCEEEEccHHHhcccH--------H--HHHhhc--cCCceEEecCCc---ccccCce
Confidence            12   444444333  111 12 9999999999997311        1  011121  255655555443   2234578


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecC-CCccHHhhHHHHHHHhcccCC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAING-PRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~-~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +++|+|++++.++.++...+   ++||++++ +.+|++|+++.+.+++|+++.
T Consensus       252 ~v~DlA~~i~~~~~~~~~~~---~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~  301 (390)
T PLN02657        252 SEADLASFIADCVLDESKIN---KVLPIGGPGKALTPLEQGEMLFRILGKEPK  301 (390)
T ss_pred             eHHHHHHHHHHHHhCccccC---CEEEcCCCCcccCHHHHHHHHHHHhCCCCc
Confidence            99999999999887665443   89999986 689999999999999998753

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.92  E-value=6e-23  Score=179.02  Aligned_cols=228  Identities=16%  Similarity=0.134  Sum_probs=157.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ++|+||||||+||||++++++|++.. +++|++++|+.....     ....+++++.+|+.|.+.+.++++++|.|+|++
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            46899999999999999999999432 378999998765421     112468899999999999999999999999998


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHH
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYV  180 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~  180 (303)
                      +.........++.+.+++|+.++.++++++.+.+  ..+++++|+..                     +..|.++   |+
T Consensus        83 g~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~--~~~iV~~SS~~---------------------~~~p~~~---Y~  136 (324)
T TIGR03589        83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG--VKRVVALSTDK---------------------AANPINL---YG  136 (324)
T ss_pred             ccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEEeCCC---------------------CCCCCCH---HH
Confidence            7543332333444689999999999999999763  33555544321                     1112344   88


Q ss_pred             HHHHHHHHh--------cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC-ceeeCCchhhhhhhcccCcc
Q 042242          181 LEDLLKEKL--------AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL-PFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       181 ~~k~~~e~~--------~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~  250 (303)
                      .+|...|..        ... ++++++||+++||++..    ....   +..... .+. ++.+.+ .    ....++++
T Consensus       137 ~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~----~i~~---~~~~~~-~~~~~~~i~~-~----~~~r~~i~  203 (324)
T TIGR03589       137 ATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS----VVPF---FKSLKE-EGVTELPITD-P----RMTRFWIT  203 (324)
T ss_pred             HHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC----cHHH---HHHHHH-hCCCCeeeCC-C----CceEeeEE
Confidence            888777621        123 99999999999996431    1111   111111 122 233322 1    34456789


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      ++|++++++.++....    ++++| ++.+..+++.|+++.+.+.+..
T Consensus       204 v~D~a~a~~~al~~~~----~~~~~-~~~~~~~sv~el~~~i~~~~~~  246 (324)
T TIGR03589       204 LEQGVNFVLKSLERML----GGEIF-VPKIPSMKITDLAEAMAPECPH  246 (324)
T ss_pred             HHHHHHHHHHHHhhCC----CCCEE-ccCCCcEEHHHHHHHHHhhCCe
Confidence            9999999999887642    23678 4666679999999999987644

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02778 3,5-epimerase/4-reductase

Probab=99.91  E-value=7.9e-23  Score=175.97  Aligned_cols=225  Identities=15%  Similarity=0.007  Sum_probs=148.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~~  104 (303)
                      +.++||||||+||||++|+++|+ ..|++|+...                 .|+.|.+.+...++  +.|.|||+|+...
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~-~~g~~V~~~~-----------------~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~   69 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQ-EQGIDFHYGS-----------------GRLENRASLEADIDAVKPTHVFNAAGVTG   69 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHH-hCCCEEEEec-----------------CccCCHHHHHHHHHhcCCCEEEECCcccC
Confidence            45799999999999999999999 6899987431                 34566666777776  4567999987653


Q ss_pred             ccC---ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCC-CcccccCCcCcCCCCCC-CCccchH
Q 042242          105 ASQ---FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGL-PEEKQVRFYDEECPRVS-KSNNFYY  179 (303)
Q Consensus       105 ~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~-~g~~~~~~~~e~~~~~p-~~~~~~y  179 (303)
                      ...   +..++.+.+++|+.++.+++++|++.+.++  +.+ ++..+|+..... .+  ...++.|+++..+ .++   |
T Consensus        70 ~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~--v~~-sS~~vy~~~~~~p~~--~~~~~~Ee~~p~~~~s~---Y  141 (298)
T PLN02778         70 RPNVDWCESHKVETIRANVVGTLTLADVCRERGLVL--TNY-ATGCIFEYDDAHPLG--SGIGFKEEDTPNFTGSF---Y  141 (298)
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-ecceEeCCCCCCCcc--cCCCCCcCCCCCCCCCc---h
Confidence            221   234556689999999999999999874333  222 222355322100 00  1224666655432 355   9


Q ss_pred             HHHHHHHHHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHH
Q 042242          180 VLEDLLKEKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQH  258 (303)
Q Consensus       180 ~~~k~~~e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~  258 (303)
                      +.+|.+.|..-.. -+..++|++..+|++.....++      ...+..  +.+....+      .   ++++++|++.++
T Consensus       142 g~sK~~~E~~~~~y~~~~~lr~~~~~~~~~~~~~~f------i~~~~~--~~~~~~~~------~---s~~yv~D~v~al  204 (298)
T PLN02778        142 SKTKAMVEELLKNYENVCTLRVRMPISSDLSNPRNF------ITKITR--YEKVVNIP------N---SMTILDELLPIS  204 (298)
T ss_pred             HHHHHHHHHHHHHhhccEEeeecccCCcccccHHHH------HHHHHc--CCCeeEcC------C---CCEEHHHHHHHH
Confidence            9999999953221 3567899988887532221111      111222  22322222      1   377889999999


Q ss_pred             HHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          259 IWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       259 ~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      +.++....  +   ++||+++++.+|+.|+++.+++.+|.+
T Consensus       205 ~~~l~~~~--~---g~yNigs~~~iS~~el~~~i~~~~~~~  240 (298)
T PLN02778        205 IEMAKRNL--T---GIYNFTNPGVVSHNEILEMYRDYIDPS  240 (298)
T ss_pred             HHHHhCCC--C---CeEEeCCCCcccHHHHHHHHHHHhCCC
Confidence            88876432  1   599999999999999999999999953

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.91  E-value=1e-22  Score=164.90  Aligned_cols=250  Identities=15%  Similarity=0.075  Sum_probs=183.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHhccC-
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLTLLE-   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~~~~-   94 (303)
                      |+|+.||||.||+-|++|++.|+ +.||+|.++.|+.+...           ...++++.+.+|++|...+.++++.+. 
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLL-ekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P   79 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLL-EKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP   79 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHH-hcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence            46899999999999999999999 79999999999865431           122358889999999999999998876 


Q ss_pred             -ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           95 -DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        95 -~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                       .|+|+++.++...+...|....+++..|+.++|++++..+++-.++...       ++++.||...+.|..|++|+.|.
T Consensus        80 dEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQA-------StSE~fG~v~~~pq~E~TPFyPr  152 (345)
T COG1089          80 DEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQA-------STSELYGLVQEIPQKETTPFYPR  152 (345)
T ss_pred             hhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEec-------ccHHhhcCcccCccccCCCCCCC
Confidence             4999999999999999988888999999999999999876433343333       34445555568899999999999


Q ss_pred             CccchHHHHHHHHH-----HhcCC-cceEEecCCceeecCCCCccchhh-HHHHHHH-HhhhCCCceeeCCchhhhhhhc
Q 042242          174 SNNFYYVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLG-CLCVYGA-VCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       174 ~~~~~y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                      +|   |+..|+.+.     +-... +-.|.-+.++-=+|  ..+..+.. ++....+ +..+.... ..-|+.    ...
T Consensus       153 SP---YAvAKlYa~W~tvNYResYgl~AcnGILFNHESP--~Rge~FVTRKIt~ava~Ik~G~q~~-l~lGNl----dAk  222 (345)
T COG1089         153 SP---YAVAKLYAYWITVNYRESYGLFACNGILFNHESP--LRGETFVTRKITRAVARIKLGLQDK-LYLGNL----DAK  222 (345)
T ss_pred             CH---HHHHHHHHHheeeehHhhcCceeecceeecCCCC--CCccceehHHHHHHHHHHHccccce-EEeccc----ccc
Confidence            99   999998876     21111 44444443333332  22222222 2332222 44444434 334444    566


Q ss_pred             ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          246 LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      .|+-++.|.++++...++.+..     ..|+++.+++.|++|+++.-.+..|.+
T Consensus       223 RDWG~A~DYVe~mwlmLQq~~P-----ddyViATg~t~sVrefv~~Af~~~g~~  271 (345)
T COG1089         223 RDWGHAKDYVEAMWLMLQQEEP-----DDYVIATGETHSVREFVELAFEMVGID  271 (345)
T ss_pred             ccccchHHHHHHHHHHHccCCC-----CceEEecCceeeHHHHHHHHHHHcCce
Confidence            7788888888877666666543     679999999999999999999999854

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.89  E-value=2.8e-21  Score=171.46  Aligned_cols=249  Identities=17%  Similarity=0.175  Sum_probs=157.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc----c------------c-C-CCeEEEEecCCCH------
Q 042242           30 VAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA----I------------Q-S-SSYCFISCDLLNP------   83 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~----~------------~-~-~~~~~~~~D~~~~------   83 (303)
                      +|+|||||||||++|+++|+ +.|  ++|+++.|..+...    .            . . .+++++.+|+.++      
T Consensus         1 ~vlvtGatG~lG~~l~~~L~-~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~   79 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELL-RRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD   79 (367)
T ss_pred             CEEEeccchHHHHHHHHHHH-hCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence            58999999999999999999 566  67999999865210    0            0 0 4788999998754      


Q ss_pred             HHHHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCC
Q 042242           84 LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        84 ~~l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                      +.+....+.+|.|+|+++....... .  .+..+.|+.++.+++++|.+...  .+++++|+..+|+...       ..+
T Consensus        80 ~~~~~~~~~~d~vih~a~~~~~~~~-~--~~~~~~nv~g~~~ll~~a~~~~~--~~~v~iSS~~v~~~~~-------~~~  147 (367)
T TIGR01746        80 AEWERLAENVDTIVHNGALVNWVYP-Y--SELRAANVLGTREVLRLAASGRA--KPLHYVSTISVLAAID-------LST  147 (367)
T ss_pred             HHHHHHHhhCCEEEeCCcEeccCCc-H--HHHhhhhhHHHHHHHHHHhhCCC--ceEEEEccccccCCcC-------CCC
Confidence            4566777788889999765432222 2  23678999999999999987632  3344555544553321       111


Q ss_pred             cCcCCCCCC--CCccchHHHHHHHHHH-----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          164 YDEECPRVS--KSNNFYYVLEDLLKEK-----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       164 ~~e~~~~~p--~~~~~~y~~~k~~~e~-----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                      ..|+.+..+  ..+...|+.+|...|.     . .+ ++++++||+.++|+......+....+..........+.   .+
T Consensus       148 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~g-~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~---~p  223 (367)
T TIGR01746       148 VTEDDAIVTPPPGLAGGYAQSKWVAELLVREASDRG-LPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGA---YP  223 (367)
T ss_pred             ccccccccccccccCCChHHHHHHHHHHHHHHHhcC-CCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCC---CC
Confidence            223322211  1111237887776662     2 24 99999999999996221111110111111111111121   12


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ...    ....++++++|+|++++.++..+... ..+++||+++++++++.|+++.+.+ +|++.+
T Consensus       224 ~~~----~~~~~~~~vddva~ai~~~~~~~~~~-~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~  283 (367)
T TIGR01746       224 DSP----ELTEDLTPVDYVARAIVALSSQPAAS-AGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK  283 (367)
T ss_pred             CCC----ccccCcccHHHHHHHHHHHHhCCCcc-cCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence            211    12345789999999999988766431 1137999999999999999999998 887653

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.88  E-value=4.3e-22  Score=166.01  Aligned_cols=225  Identities=14%  Similarity=0.134  Sum_probs=145.7

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----cCCCeE----EEEecCCCHHHHHHHHh--ccCc
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I----QSSSYC----FISCDLLNPLDIKRKLT--LLED   95 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----~~~~~~----~~~~D~~~~~~l~~~~~--~~~~   95 (303)
                      ||||||+|.||+.|+++|++..-.+|++++|++.+..     .    ..+++.    .+.+|++|.+.+.++++  +.|.
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            7999999999999999999433356999999976642     1    123454    35889999999999999  6667


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |+|.|+..+.+.....+.+++++|+.|+.+++++|.+.  .+.+++.+|+.+.                        .+|
T Consensus        81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~--~v~~~v~ISTDKA------------------------v~P  134 (293)
T PF02719_consen   81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH--GVERFVFISTDKA------------------------VNP  134 (293)
T ss_dssp             EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT--T-SEEEEEEECGC------------------------SS-
T ss_pred             EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEcccccc------------------------CCC
Confidence            99999888777666677779999999999999999987  3667777765433                        223


Q ss_pred             cchHHHHHHHHHH-----hc---CC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhc
Q 042242          176 NFYYVLEDLLKEK-----LA---GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~~---~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                      ...|+.+|.+.|.     ..   +. .+++++|+|+|.|..+. -   ++.   |.. +.+  +.|+.+.... .. +.|
T Consensus       135 tnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GS-V---ip~---F~~Qi~~--g~PlTvT~p~-mt-Rff  203 (293)
T PF02719_consen  135 TNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGS-V---IPL---FKKQIKN--GGPLTVTDPD-MT-RFF  203 (293)
T ss_dssp             -SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTS-C---HHH---HHHHHHT--TSSEEECETT--E-EEE
T ss_pred             CcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCc-H---HHH---HHHHHHc--CCcceeCCCC-cE-EEE
Confidence            3339999999883     11   12 79999999999994322 2   122   222 333  6777664422 11 445


Q ss_pred             ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          246 LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      +.   +++.+..++.++...    .+|++|.+--++++++.|+++.+.+..|..
T Consensus       204 mt---i~EAv~Lvl~a~~~~----~~geifvl~mg~~v~I~dlA~~~i~~~g~~  250 (293)
T PF02719_consen  204 MT---IEEAVQLVLQAAALA----KGGEIFVLDMGEPVKILDLAEAMIELSGLE  250 (293)
T ss_dssp             E----HHHHHHHHHHHHHH------TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred             ec---HHHHHHHHHHHHhhC----CCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence            54   444455555554333    345899999999999999999999999864

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.88  E-value=5.4e-21  Score=169.39  Aligned_cols=231  Identities=15%  Similarity=0.151  Sum_probs=170.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhc--cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTL--LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~--~~~   95 (303)
                      .+|+||||||+|-||+.+++++++.+--+++.++|++.+..         ....++.++.+|+.|.+.+..++++  .|.
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~  328 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI  328 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence            57999999999999999999999443345999999886642         1235788899999999999999999  667


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |+|+|+..+.+....++.+.+++|+.|+.|++++|.+.  ++..++.+|+.+.                     ..|.+-
T Consensus       329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~--~V~~~V~iSTDKA---------------------V~PtNv  385 (588)
T COG1086         329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN--GVKKFVLISTDKA---------------------VNPTNV  385 (588)
T ss_pred             EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh--CCCEEEEEecCcc---------------------cCCchH
Confidence            99999998988888889999999999999999999987  3566666665322                     122333


Q ss_pred             cchHHHHHHHHHH-----hc---C-CcceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhc
Q 042242          176 NFYYVLEDLLKEK-----LA---G-KVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~~---~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                         |+.+|.+.|.     ..   + ..+++.+|.|+|.|..+.       .+..|.. +.+  |.|+.+.. +..- +.|
T Consensus       386 ---mGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGS-------ViPlFk~QI~~--GgplTvTd-p~mt-Ryf  451 (588)
T COG1086         386 ---MGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGS-------VIPLFKKQIAE--GGPLTVTD-PDMT-RFF  451 (588)
T ss_pred             ---hhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCC-------CHHHHHHHHHc--CCCccccC-CCce-eEE
Confidence               8888888872     22   1 178999999999995322       2222322 444  56655433 2222 667


Q ss_pred             ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          246 LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +.+.++   ++..+++....    ++|++|-+..|+++++.|+++.+-+..|..++
T Consensus       452 MTI~EA---v~LVlqA~a~~----~gGeifvldMGepvkI~dLAk~mi~l~g~~~~  500 (588)
T COG1086         452 MTIPEA---VQLVLQAGAIA----KGGEIFVLDMGEPVKIIDLAKAMIELAGQTPP  500 (588)
T ss_pred             EEHHHH---HHHHHHHHhhc----CCCcEEEEcCCCCeEHHHHHHHHHHHhCCCCC
Confidence            766666   44444443332    45799999999999999999999999984443

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.88  E-value=6.8e-21  Score=175.38  Aligned_cols=256  Identities=11%  Similarity=0.092  Sum_probs=161.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhc-CC-CeEEEEecCCcccc----c------------------------cCCCeEEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIST-AN-WKVYGIARKPEITA----I------------------------QSSSYCFI   76 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~-~g-~~V~~~~r~~~~~~----~------------------------~~~~~~~~   76 (303)
                      .+++|||||||||||++|++.|++. .+ -+|+++.|.+....    .                        ...++.++
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            4689999999999999999999932 22 26899999654310    0                        02468889


Q ss_pred             EecCCCH------HHHHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccc
Q 042242           77 SCDLLNP------LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYV  150 (303)
Q Consensus        77 ~~D~~~~------~~l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~  150 (303)
                      .+|++++      +..+.+.+.+|.|+|+|+......   +....+++|+.++.+++++|+.. ..+.++++.|+..+|+
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~---~~~~a~~vNV~GT~nLLelA~~~-~~lk~fV~vSTayVyG  273 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDE---RYDVAIDINTRGPCHLMSFAKKC-KKLKLFLQVSTAYVNG  273 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECcccccccc---CHHHHHHHHHHHHHHHHHHHHHc-CCCCeEEEccCceeec
Confidence            9999987      355666677888999987654322   23347899999999999999875 2345566666666775


Q ss_pred             cccCCCcccccCCcCcC---------------------------------C-C------------------CCCCCccch
Q 042242          151 SLQGLPEEKQVRFYDEE---------------------------------C-P------------------RVSKSNNFY  178 (303)
Q Consensus       151 ~~~~~~g~~~~~~~~e~---------------------------------~-~------------------~~p~~~~~~  178 (303)
                      .......   +.++...                                 . +                  .....|++ 
T Consensus       274 ~~~G~i~---E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNt-  349 (605)
T PLN02503        274 QRQGRIM---EKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDT-  349 (605)
T ss_pred             CCCCeee---eeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCCh-
Confidence            5421111   1111100                                 0 0                  01122333 


Q ss_pred             HHHHHHHHHHh---cCC-cceEEecCCceeec----CCCCccc--hhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC
Q 042242          179 YVLEDLLKEKL---AGK-VAWSVHRPGLLLGS----SHRSLYN--FLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       179 y~~~k~~~e~~---~~~-~~~~ilRp~~v~G~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                      |..+|.++|..   ... ++++|+||+.|.+.    -+++..+  ........  ..  .|.-..+.++.    ....++
T Consensus       350 Yt~TK~lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~--~g--~G~lr~~~~~~----~~~~Di  421 (605)
T PLN02503        350 YVFTKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLY--YG--KGQLTGFLADP----NGVLDV  421 (605)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccchhhhh--ee--ccceeEEEeCC----CeeEeE
Confidence            78888888832   222 99999999999441    1111111  11111111  11  23322344433    678899


Q ss_pred             ccHHHHHHHHHHHhcC-cCCcCCCCceEEeecC--CCccHHhhHHHHHHHhcc
Q 042242          249 SDSRLVAEQHIWVATN-DDISSTKGQAFNAING--PRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~-~~~~~~~g~~yni~~~--~~~s~~e~~~~i~~~~g~  298 (303)
                      +.+|.++.+++.++.. .......+.+||++++  .+++|+++++.+.+.+..
T Consensus       422 VPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~  474 (605)
T PLN02503        422 VPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS  474 (605)
T ss_pred             EeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence            9999999999888432 1111023589999988  799999999999887754

>PRK05865 hypothetical protein; Provisional

Probab=99.88  E-value=3.3e-21  Score=182.95  Aligned_cols=201  Identities=21%  Similarity=0.309  Sum_probs=146.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQF  108 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~~  108 (303)
                      |+|+|||||||||++++++|+ ..|++|++++|+.....  ..+++++.+|+.|.+.+.++++++|.|+|+++....   
T Consensus         1 MkILVTGATGfIGs~La~~Ll-~~G~~Vv~l~R~~~~~~--~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~---   74 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLL-SQGHEVVGIARHRPDSW--PSSADFIAADIRDATAVESAMTGADVVAHCAWVRGR---   74 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCcCEEEEEECCchhhc--ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccc---
Confidence            479999999999999999999 68999999999754321  236888999999999999999999999999754211   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHHH
Q 042242          109 ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEK  188 (303)
Q Consensus       109 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e~  188 (303)
                            .+++|+.++.+++++|++.+  ..++++.|+.              .                +...|+++.+ 
T Consensus        75 ------~~~vNv~GT~nLLeAa~~~g--vkr~V~iSS~--------------~----------------K~aaE~ll~~-  115 (854)
T PRK05865         75 ------NDHINIDGTANVLKAMAETG--TGRIVFTSSG--------------H----------------QPRVEQMLAD-  115 (854)
T ss_pred             ------hHHHHHHHHHHHHHHHHHcC--CCeEEEECCc--------------H----------------HHHHHHHHHH-
Confidence                  46889999999999998763  3345444421              0                1444555533 


Q ss_pred             hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCc
Q 042242          189 LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDIS  268 (303)
Q Consensus       189 ~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~  268 (303)
                       .+ ++++++||+++||++..   +++..      +   ...+....|+.    ....+++|++|+|++++.++..+...
T Consensus       116 -~g-l~~vILRp~~VYGP~~~---~~i~~------l---l~~~v~~~G~~----~~~~dfIhVdDVA~Ai~~aL~~~~~~  177 (854)
T PRK05865        116 -CG-LEWVAVRCALIFGRNVD---NWVQR------L---FALPVLPAGYA----DRVVQVVHSDDAQRLLVRALLDTVID  177 (854)
T ss_pred             -cC-CCEEEEEeceEeCCChH---HHHHH------H---hcCceeccCCC----CceEeeeeHHHHHHHHHHHHhCCCcC
Confidence             24 99999999999996411   11111      1   12233333332    34567899999999999887654333


Q ss_pred             CCCCceEEeecCCCccHHhhHHHHHHH
Q 042242          269 STKGQAFNAINGPRFTWKEIWPSIGKK  295 (303)
Q Consensus       269 ~~~g~~yni~~~~~~s~~e~~~~i~~~  295 (303)
                         +++||+++++.+|++|+++.+.+.
T Consensus       178 ---ggvyNIgsg~~~Si~EIae~l~~~  201 (854)
T PRK05865        178 ---SGPVNLAAPGELTFRRIAAALGRP  201 (854)
T ss_pred             ---CCeEEEECCCcccHHHHHHHHhhh
Confidence               368999999999999999999874

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.87  E-value=7.2e-21  Score=163.24  Aligned_cols=211  Identities=12%  Similarity=0.094  Sum_probs=142.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHH------hc-cCceeEEeec
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKL------TL-LEDVTHIFWV  102 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~------~~-~~~V~~~~~~  102 (303)
                      +|+||||||+||++++++|+ +.|++|++++|++.+..  ..+++.+.+|+.|++++..++      ++ +|.|+|+...
T Consensus         1 ~ilVtGatG~iG~~vv~~L~-~~g~~V~~~~R~~~~~~--~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~   77 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQ-AASVPFLVASRSSSSSA--GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP   77 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHH-hCCCcEEEEeCCCcccc--CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence            48999999999999999999 68999999999986532  357778899999999999999      45 6767776432


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHH
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLE  182 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~  182 (303)
                      ..   ..          .....++++++++.+  ++++++.|+...+.          .      .    ...   ...+
T Consensus        78 ~~---~~----------~~~~~~~i~aa~~~g--v~~~V~~Ss~~~~~----------~------~----~~~---~~~~  119 (285)
T TIGR03649        78 IP---DL----------APPMIKFIDFARSKG--VRRFVLLSASIIEK----------G------G----PAM---GQVH  119 (285)
T ss_pred             CC---Ch----------hHHHHHHHHHHHHcC--CCEEEEeeccccCC----------C------C----chH---HHHH
Confidence            11   11          123457888888763  45666655421110          0      0    000   1223


Q ss_pred             HHHHHHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHh
Q 042242          183 DLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVA  262 (303)
Q Consensus       183 k~~~e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~  262 (303)
                      +++.+. .+ ++++++||+.+++.... .. ....      +. . ..++..+ ..    ...+.+++++|+|++++.++
T Consensus       120 ~~l~~~-~g-i~~tilRp~~f~~~~~~-~~-~~~~------~~-~-~~~~~~~-~g----~~~~~~v~~~Dva~~~~~~l  182 (285)
T TIGR03649       120 AHLDSL-GG-VEYTVLRPTWFMENFSE-EF-HVEA------IR-K-ENKIYSA-TG----DGKIPFVSADDIARVAYRAL  182 (285)
T ss_pred             HHHHhc-cC-CCEEEEeccHHhhhhcc-cc-cccc------cc-c-CCeEEec-CC----CCccCcccHHHHHHHHHHHh
Confidence            333322 24 99999999998863211 00 0000      11 1 1222222 11    44567999999999999988


Q ss_pred             cCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          263 TNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       263 ~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ..+...+   +.|++++++.+|+.|+++.+++++|++.+
T Consensus       183 ~~~~~~~---~~~~l~g~~~~s~~eia~~l~~~~g~~v~  218 (285)
T TIGR03649       183 TDKVAPN---TDYVVLGPELLTYDDVAEILSRVLGRKIT  218 (285)
T ss_pred             cCCCcCC---CeEEeeCCccCCHHHHHHHHHHHhCCceE
Confidence            8765443   78999999999999999999999999865

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.86  E-value=1.3e-20  Score=152.61  Aligned_cols=233  Identities=17%  Similarity=0.157  Sum_probs=170.3

Q ss_pred             cCCcCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc
Q 042242           19 VNRGREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        19 ~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      -+..+++.++..+-|+|||||+|++++++|. +.|-+|++--|..+...      -+..++-+...|+.|.++++++++.
T Consensus        52 GtGGRsS~sGiVaTVFGAtGFlGryvvnkla-k~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~  130 (391)
T KOG2865|consen   52 GTGGRSSVSGIVATVFGATGFLGRYVVNKLA-KMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKH  130 (391)
T ss_pred             CCCCcccccceEEEEecccccccHHHHHHHh-hcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHh
Confidence            3456667777899999999999999999998 68889999988655422      1234677889999999999999999


Q ss_pred             cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           93 LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        93 ~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      .++||++.+..+...+..    +.++|+.+.+++...|++. ..+++|+|.....                 +       
T Consensus       131 sNVVINLIGrd~eTknf~----f~Dvn~~~aerlAricke~GVerfIhvS~Lgan-----------------v-------  182 (391)
T KOG2865|consen  131 SNVVINLIGRDYETKNFS----FEDVNVHIAERLARICKEAGVERFIHVSCLGAN-----------------V-------  182 (391)
T ss_pred             CcEEEEeeccccccCCcc----cccccchHHHHHHHHHHhhChhheeehhhcccc-----------------c-------
Confidence            999999988776655544    5689999999999999998 5567776544310                 0       


Q ss_pred             CCCccchHHHHHHHHHHhcC-C-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCC-CceeeCCchhhhhhhcccC
Q 042242          172 SKSNNFYYVLEDLLKEKLAG-K-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLN-LPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~~~~-~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~  248 (303)
                       .++ +.|-.+|.+.|..-. . -..+|+||+.|||..++       -+..|..+.++.+ .|+.-.|    | ....+.
T Consensus       183 -~s~-Sr~LrsK~~gE~aVrdafPeAtIirPa~iyG~eDr-------fln~ya~~~rk~~~~pL~~~G----e-kT~K~P  248 (391)
T KOG2865|consen  183 -KSP-SRMLRSKAAGEEAVRDAFPEATIIRPADIYGTEDR-------FLNYYASFWRKFGFLPLIGKG----E-KTVKQP  248 (391)
T ss_pred             -cCh-HHHHHhhhhhHHHHHhhCCcceeechhhhcccchh-------HHHHHHHHHHhcCceeeecCC----c-ceeecc
Confidence             111 114556666664322 2 56899999999994322       2333444444332 2333233    2 566677


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      +.+.|+|.+++.++.+|+..|   .+|..++++..++.|+++.+-+...
T Consensus       249 VyV~DVaa~IvnAvkDp~s~G---ktye~vGP~~yql~eLvd~my~~~~  294 (391)
T KOG2865|consen  249 VYVVDVAAAIVNAVKDPDSMG---KTYEFVGPDRYQLSELVDIMYDMAR  294 (391)
T ss_pred             EEEehHHHHHHHhccCccccC---ceeeecCCchhhHHHHHHHHHHHHh
Confidence            888888999999999998765   9999999999999999999876554

>PRK12320 hypothetical protein; Provisional

Probab=99.85  E-value=7.4e-20  Score=170.43  Aligned_cols=202  Identities=15%  Similarity=0.108  Sum_probs=137.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQF  108 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~~  108 (303)
                      |+||||||+||||++|+++|+ +.||+|++++|.+...  ..++++++.+|+.+.. +.+.++++|.|+|+++...    
T Consensus         1 MkILVTGAaGFIGs~La~~Ll-~~G~~Vi~ldr~~~~~--~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~----   72 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLI-AAGHTVSGIAQHPHDA--LDPRVDYVCASLRNPV-LQELAGEADAVIHLAPVDT----   72 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEEEeCChhhc--ccCCceEEEccCCCHH-HHHHhcCCCEEEEcCccCc----
Confidence            379999999999999999999 6899999999976432  2357889999999985 7788888888999986421    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHHH
Q 042242          109 ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEK  188 (303)
Q Consensus       109 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e~  188 (303)
                       ..   ....|+.++.+++++|++.+.+   +++.|+.  |+.+                 .  .+    ...|.++.. 
T Consensus        73 -~~---~~~vNv~Gt~nLleAA~~~GvR---iV~~SS~--~G~~-----------------~--~~----~~aE~ll~~-  119 (699)
T PRK12320         73 -SA---PGGVGITGLAHVANAAARAGAR---LLFVSQA--AGRP-----------------E--LY----RQAETLVST-  119 (699)
T ss_pred             -cc---hhhHHHHHHHHHHHHHHHcCCe---EEEEECC--CCCC-----------------c--cc----cHHHHHHHh-
Confidence             11   2358999999999999987543   3344432  2110                 0  01    123333332 


Q ss_pred             hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCc
Q 042242          189 LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDIS  268 (303)
Q Consensus       189 ~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~  268 (303)
                       .. ++++++|++++||++....  ....+..+.. ....+.+              +.+++++|++++++.++..+.  
T Consensus       120 -~~-~p~~ILR~~nVYGp~~~~~--~~r~I~~~l~-~~~~~~p--------------I~vIyVdDvv~alv~al~~~~--  178 (699)
T PRK12320        120 -GW-APSLVIRIAPPVGRQLDWM--VCRTVATLLR-SKVSARP--------------IRVLHLDDLVRFLVLALNTDR--  178 (699)
T ss_pred             -cC-CCEEEEeCceecCCCCccc--HhHHHHHHHH-HHHcCCc--------------eEEEEHHHHHHHHHHHHhCCC--
Confidence             13 8999999999999643211  1111111111 0001112              224799999999988886532  


Q ss_pred             CCCCceEEeecCCCccHHhhHHHHHHH
Q 042242          269 STKGQAFNAINGPRFTWKEIWPSIGKK  295 (303)
Q Consensus       269 ~~~g~~yni~~~~~~s~~e~~~~i~~~  295 (303)
                        . ++|||++++.+|+.|+++.++..
T Consensus       179 --~-GiyNIG~~~~~Si~el~~~i~~~  202 (699)
T PRK12320        179 --N-GVVDLATPDTTNVVTAWRLLRSV  202 (699)
T ss_pred             --C-CEEEEeCCCeeEHHHHHHHHHHh
Confidence              1 49999999999999999988765

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.85  E-value=6.7e-20  Score=174.64  Aligned_cols=224  Identities=14%  Similarity=0.002  Sum_probs=146.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~~~~  104 (303)
                      +.++||||||+||||++|++.|. ..|++|..                 ..+|++|.+.+...++.  .|.|||+|+...
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~-~~g~~v~~-----------------~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~  440 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCE-KQGIAYEY-----------------GKGRLEDRSSLLADIRNVKPTHVFNAAGVTG  440 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHH-hCCCeEEe-----------------eccccccHHHHHHHHHhhCCCEEEECCcccC
Confidence            45689999999999999999998 57888731                 12467888888888874  456999987643


Q ss_pred             ---ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC-CCccchHH
Q 042242          105 ---ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS-KSNNFYYV  180 (303)
Q Consensus       105 ---~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p-~~~~~~y~  180 (303)
                         .+.+..++.+.+++|+.++.+++++|++.+.++.++   |+..+|+....... ....|+.|+++..| .++   |+
T Consensus       441 ~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~---Ss~~v~~~~~~~~~-~~~~p~~E~~~~~~~~~~---Yg  513 (668)
T PLN02260        441 RPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNF---ATGCIFEYDAKHPE-GSGIGFKEEDKPNFTGSF---YS  513 (668)
T ss_pred             CCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEE---cccceecCCccccc-ccCCCCCcCCCCCCCCCh---hh
Confidence               222334556689999999999999999875443333   23335532110000 01246777765543 356   99


Q ss_pred             HHHHHHHHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHH
Q 042242          181 LEDLLKEKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHI  259 (303)
Q Consensus       181 ~~k~~~e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~  259 (303)
                      .+|...|..-.. -+..++|+.++||.......++...+      .+. ..++.++.          +..++++++.+++
T Consensus       514 ~sK~~~E~~~~~~~~~~~~r~~~~~~~~~~~~~nfv~~~------~~~-~~~~~vp~----------~~~~~~~~~~~~~  576 (668)
T PLN02260        514 KTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKI------SRY-NKVVNIPN----------SMTVLDELLPISI  576 (668)
T ss_pred             HHHHHHHHHHHhhhhheEEEEEEecccCCCCccHHHHHH------hcc-ceeeccCC----------CceehhhHHHHHH
Confidence            999999854322 46788899999975433232333221      111 22223332          2445666776666


Q ss_pred             HHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          260 WVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       260 ~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      .++..+ .    +++||+++++.+||.|+++.|++.++
T Consensus       577 ~l~~~~-~----~giyni~~~~~~s~~e~a~~i~~~~~  609 (668)
T PLN02260        577 EMAKRN-L----RGIWNFTNPGVVSHNEILEMYKDYID  609 (668)
T ss_pred             HHHHhC-C----CceEEecCCCcCcHHHHHHHHHHhcC
Confidence            666532 1    26999999999999999999999874

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.7e-19  Score=140.39  Aligned_cols=241  Identities=16%  Similarity=0.086  Sum_probs=159.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC--e-EEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccC--ceeEEeec
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW--K-VYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLE--DVTHIFWV  102 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~-V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~--~V~~~~~~  102 (303)
                      +++|||||++|++|++|.+.+. ..+.  + .....              .-.+|+++.++.+..|...+  .|||+|+.
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~-~q~~~~e~wvf~~--------------skd~DLt~~a~t~~lF~~ekPthVIhlAAm   65 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQ-EQGFDDENWVFIG--------------SKDADLTNLADTRALFESEKPTHVIHLAAM   65 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHH-hcCCCCcceEEec--------------cccccccchHHHHHHHhccCCceeeehHhh
Confidence            3799999999999999999998 4553  1 11111              11379999999999998776  49999654


Q ss_pred             cc-ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCCCC-CCCc-cch
Q 042242          103 TW-ASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV-SKSN-NFY  178 (303)
Q Consensus       103 ~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~-p~~~-~~~  178 (303)
                      .. ...+...+.++++.|+..-.|++..|-+.+ .++....   +...|       .++...|++|..... |..| ++.
T Consensus        66 VGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vscl---StCIf-------Pdkt~yPIdEtmvh~gpphpsN~g  135 (315)
T KOG1431|consen   66 VGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCL---STCIF-------PDKTSYPIDETMVHNGPPHPSNFG  135 (315)
T ss_pred             hcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhc---ceeec-------CCCCCCCCCHHHhccCCCCCCchH
Confidence            32 122222334589999999999999998873 3332221   22233       222356788877543 3333 566


Q ss_pred             HHHHHHHHH-----HhcCC-cceEEecCCceeecCCCCcc-c--hhhHHHHHHHHhhhCCC-ceeeCCchhhhhhhcccC
Q 042242          179 YVLEDLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLY-N--FLGCLCVYGAVCKHLNL-PFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       179 y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~-~--~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~  248 (303)
                      |+..|.+..     +.... ..++.+-|.++|||.++... +  .++.+....-..+..+. ++...|++.    .+..+
T Consensus       136 YsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~----PlRqF  211 (315)
T KOG1431|consen  136 YSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGS----PLRQF  211 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCC----hHHHH
Confidence            887775443     22222 89999999999997655221 1  23333322223333344 677777764    44456


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC--CccHHhhHHHHHHHhcccCC
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGP--RFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~--~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++.+|+|+++++++..-+..    +..+++.++  .+|++|+++++.+++|+...
T Consensus       212 iys~DLA~l~i~vlr~Y~~v----Epiils~ge~~EVtI~e~aeaV~ea~~F~G~  262 (315)
T KOG1431|consen  212 IYSDDLADLFIWVLREYEGV----EPIILSVGESDEVTIREAAEAVVEAVDFTGK  262 (315)
T ss_pred             hhHhHHHHHHHHHHHhhcCc----cceEeccCccceeEHHHHHHHHHHHhCCCce
Confidence            66778899999998776443    678888777  89999999999999988653

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.82  E-value=5.5e-19  Score=141.56  Aligned_cols=181  Identities=23%  Similarity=0.330  Sum_probs=123.8

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccCChH
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFAS  110 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~~~~  110 (303)
                      |+|+||||++|++++++|+ +.|++|++++|++.+... .++++++++|+.|.+++.++++++|.|+++++....     
T Consensus         1 I~V~GatG~vG~~l~~~L~-~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~-----   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLL-RRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK-----   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT-----
T ss_pred             eEEECCCChHHHHHHHHHH-HCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc-----
Confidence            7999999999999999999 678999999999886544 789999999999999999999999988888754222     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH-Hh
Q 042242          111 DMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-KL  189 (303)
Q Consensus       111 ~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-~~  189 (303)
                              ....+.++++++++.+  ..+++++|+...|.....        .........   +.. |...+...+ ..
T Consensus        74 --------~~~~~~~~~~a~~~~~--~~~~v~~s~~~~~~~~~~--------~~~~~~~~~---~~~-~~~~~~~~e~~~  131 (183)
T PF13460_consen   74 --------DVDAAKNIIEAAKKAG--VKRVVYLSSAGVYRDPPG--------LFSDEDKPI---FPE-YARDKREAEEAL  131 (183)
T ss_dssp             --------HHHHHHHHHHHHHHTT--SSEEEEEEETTGTTTCTS--------EEEGGTCGG---GHH-HHHHHHHHHHHH
T ss_pred             --------cccccccccccccccc--cccceeeeccccCCCCCc--------ccccccccc---hhh-hHHHHHHHHHHH
Confidence                    1566778999998863  557777776656643211        111111110   111 333333333 11


Q ss_pred             cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcC
Q 042242          190 AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN  264 (303)
Q Consensus       190 ~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~  264 (303)
                      +.. ++|+++||+.+||.... ..    .              +...+.     ......++.+|+|++++.++.+
T Consensus       132 ~~~~~~~~ivrp~~~~~~~~~-~~----~--------------~~~~~~-----~~~~~~i~~~DvA~~~~~~l~~  183 (183)
T PF13460_consen  132 RESGLNWTIVRPGWIYGNPSR-SY----R--------------LIKEGG-----PQGVNFISREDVAKAIVEALEN  183 (183)
T ss_dssp             HHSTSEEEEEEESEEEBTTSS-SE----E--------------EESSTS-----TTSHCEEEHHHHHHHHHHHHH-
T ss_pred             HhcCCCEEEEECcEeEeCCCc-ce----e--------------EEeccC-----CCCcCcCCHHHHHHHHHHHhCC
Confidence            222 99999999999996422 11    1              111111     2334688999999999988753

...

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.81  E-value=5.1e-18  Score=144.90  Aligned_cols=230  Identities=12%  Similarity=0.087  Sum_probs=145.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      |.|+||||||+|+||++++++|+ +.|++|++++|++....    ....++.++++|++|.+++.+.++.       +|.
T Consensus         1 m~k~vlVtGasg~IG~~la~~L~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          1 MSKTWFITGASSGFGRGMTERLL-ARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            45799999999999999999999 68999999999865432    1124688899999999988877654       466


Q ss_pred             eeEEeecccccC----ChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWASQ----FASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      |+|+++......    +.....+.+++|+.++.++++++...  .....+++.+|+...+            .+.    +
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~----~  143 (276)
T PRK06482         80 VVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQ------------IAY----P  143 (276)
T ss_pred             EEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc------------cCC----C
Confidence            889876543221    23344457889999999999997443  1122345444432111            000    0


Q ss_pred             CCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCce---eecCCCCc--cchh--hHHHHHHHHhhhCCCcee
Q 042242          170 RVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLL---LGSSHRSL--YNFL--GCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v---~G~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~  233 (303)
                        +..+   |+.+|...+     +.   ... ++++++||+.+   ||.+....  ....  .....+.....  .    
T Consensus       144 --~~~~---Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----  212 (276)
T PRK06482        144 --GFSL---YHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALA--D----  212 (276)
T ss_pred             --CCch---hHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHh--h----
Confidence              1233   777766544     11   112 99999999988   55322111  0000  00001111000  0    


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                        +       .+.-..|++|++.+++.++..+..    +..||++++...+..|+++.+.+.++
T Consensus       213 --~-------~~~~~~d~~~~~~a~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (276)
T PRK06482        213 --G-------SFAIPGDPQKMVQAMIASADQTPA----PRRLTLGSDAYASIRAALSERLAALE  263 (276)
T ss_pred             --c-------cCCCCCCHHHHHHHHHHHHcCCCC----CeEEecChHHHHHHHHHHHHHHHHHH
Confidence              1       011135889999999998875532    36799999998899888887777664

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.80  E-value=5.4e-19  Score=148.48  Aligned_cols=211  Identities=18%  Similarity=0.160  Sum_probs=105.8

Q ss_pred             EEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-----------------c---cCCCeEEEEecCCCH------HH
Q 042242           33 IFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-----------------I---QSSSYCFISCDLLNP------LD   85 (303)
Q Consensus        33 VtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-----------------~---~~~~~~~~~~D~~~~------~~   85 (303)
                      |||||||+|++|+++|++... .+|+++.|.+....                 .   ...+++++.+|++++      +.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999994332 38999999874410                 0   157899999999985      45


Q ss_pred             HHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCC-
Q 042242           86 IKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRF-  163 (303)
Q Consensus        86 l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~-  163 (303)
                      +..+.+.++.|+|+|+......+..+   +.+.|+.|+.++++.|... .++++++|+   ..+.+......   .+.. 
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~~~~~~~---~~~~NV~gt~~ll~la~~~~~~~~~~iST---a~v~~~~~~~~---~~~~~  151 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNFNAPYSE---LRAVNVDGTRNLLRLAAQGKRKRFHYIST---AYVAGSRPGTI---EEKVY  151 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SBS-S--E---EHHHHHHHHHHHHHHHTSSS---EEEEEE---GGGTTS-TTT-----SSS-
T ss_pred             hhccccccceeeecchhhhhcccchh---hhhhHHHHHHHHHHHHHhccCcceEEecc---ccccCCCCCcc---ccccc
Confidence            66677888999999776544433333   6799999999999999954 334444444   21221111000   0000 


Q ss_pred             -cCcCCCCCCCCccchHHHHHHHHHH-----h-c-CCcceEEecCCceeecCCCCccchhh-HHHHHHHHhhhCCCceee
Q 042242          164 -YDEECPRVSKSNNFYYVLEDLLKEK-----L-A-GKVAWSVHRPGLLLGSSHRSLYNFLG-CLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 -~~e~~~~~p~~~~~~y~~~k~~~e~-----~-~-~~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  234 (303)
                       ..+.....+......|..+|++.|.     . + + ++++|+||+.|+|.......+... .......... .+.....
T Consensus       152 ~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g-~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~-~~~~p~~  229 (249)
T PF07993_consen  152 PEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHG-LPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIA-LGAFPDL  229 (249)
T ss_dssp             HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH----EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHH-H-EEES-
T ss_pred             ccccccchhhccCCccHHHHHHHHHHHHHHHHhcCC-ceEEEEecCcccccCCCceeeccchHHHHHHHHHH-cCCcccc
Confidence             0111111111112248888888882     2 2 5 999999999999943221111111 1111111111 1222223


Q ss_pred             CCchhhhhhhcccCccHHHHHHHH
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQH  258 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~  258 (303)
                      ++..    ...++++.+|.+|+++
T Consensus       230 ~~~~----~~~~d~vPVD~va~aI  249 (249)
T PF07993_consen  230 PGDP----DARLDLVPVDYVARAI  249 (249)
T ss_dssp             SB-------TT--EEEHHHHHHHH
T ss_pred             cCCC----CceEeEECHHHHHhhC
Confidence            3322    3457889998888764

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK09135 pteridine reductase; Provisional

Probab=99.80  E-value=9.2e-18  Score=140.99  Aligned_cols=214  Identities=18%  Similarity=0.174  Sum_probs=135.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c---cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I---QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~---~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +.++||||||+|+||++++++|+ +.|++|++++|+..+..      .   ....+.++.+|++|.+++..+++.     
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLH-AAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999 68999999998753311      0   113577889999999998888875     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        +|.|+|+++....    .....+..+.+++|+.++.++++++.... ..-..++..++                  ..
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~------------------~~  145 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD------------------IH  145 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC------------------hh
Confidence              4669999765322    22334455688999999999999997541 11112222111                  11


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----Hh----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----KL----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~~----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                      +..+..|..+   |+.+|...+     +.    .+ ++++++||+.++|+......+   ...... ...  ..++    
T Consensus       146 ~~~~~~~~~~---Y~~sK~~~~~~~~~l~~~~~~~-i~~~~v~pg~~~~~~~~~~~~---~~~~~~-~~~--~~~~----  211 (249)
T PRK09135        146 AERPLKGYPV---YCAAKAALEMLTRSLALELAPE-VRVNAVAPGAILWPEDGNSFD---EEARQA-ILA--RTPL----  211 (249)
T ss_pred             hcCCCCCchh---HHHHHHHHHHHHHHHHHHHCCC-CeEEEEEeccccCccccccCC---HHHHHH-HHh--cCCc----
Confidence            2222222334   777776554     11    23 899999999999965332211   111101 111  1111    


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                               ....+++|+|+++.+++.....  ..|++||++++...+
T Consensus       212 ---------~~~~~~~d~a~~~~~~~~~~~~--~~g~~~~i~~g~~~~  248 (249)
T PRK09135        212 ---------KRIGTPEDIAEAVRFLLADASF--ITGQILAVDGGRSLT  248 (249)
T ss_pred             ---------CCCcCHHHHHHHHHHHcCcccc--ccCcEEEECCCeecc
Confidence                     1123578999998777654322  346899999987654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.80  E-value=2.2e-19  Score=149.52  Aligned_cols=224  Identities=19%  Similarity=0.263  Sum_probs=140.1

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      |+|+||||.+|+++++.|+ +.+++|++++|++.+..   +...+++++.+|+.|.+++.++|+++|.|+.+.....  .
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~--~   77 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH--P   77 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC--C
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch--h
Confidence            7999999999999999999 58999999999985432   3446889999999999999999999998776643221  1


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc--cchHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN--NFYYVLEDLL  185 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~--~~~y~~~k~~  185 (303)
                      .          ......++++++++++  ++|++..+-...               ..+.....|..+  ..++..++++
T Consensus        78 ~----------~~~~~~~li~Aa~~ag--Vk~~v~ss~~~~---------------~~~~~~~~p~~~~~~~k~~ie~~l  130 (233)
T PF05368_consen   78 S----------ELEQQKNLIDAAKAAG--VKHFVPSSFGAD---------------YDESSGSEPEIPHFDQKAEIEEYL  130 (233)
T ss_dssp             C----------HHHHHHHHHHHHHHHT---SEEEESEESSG---------------TTTTTTSTTHHHHHHHHHHHHHHH
T ss_pred             h----------hhhhhhhHHHhhhccc--cceEEEEEeccc---------------ccccccccccchhhhhhhhhhhhh
Confidence            1          1234567999999874  677765331111               111111111111  1112234444


Q ss_pred             HHHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          186 KEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       186 ~e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      .+.  + ++|+++||+..+.......    ...   ..+.. ....+.+.+..+   .....+++.+|++++.+.++.++
T Consensus       131 ~~~--~-i~~t~i~~g~f~e~~~~~~----~~~---~~~~~-~~~~~~~~~~~~---~~~~~~~~~~Dvg~~va~il~~p  196 (233)
T PF05368_consen  131 RES--G-IPYTIIRPGFFMENLLPPF----APV---VDIKK-SKDVVTLPGPGN---QKAVPVTDTRDVGRAVAAILLDP  196 (233)
T ss_dssp             HHC--T-SEBEEEEE-EEHHHHHTTT----HHT---TCSCC-TSSEEEEETTST---SEEEEEEHHHHHHHHHHHHHHSG
T ss_pred             hhc--c-ccceeccccchhhhhhhhh----ccc---ccccc-cceEEEEccCCC---ccccccccHHHHHHHHHHHHcCh
Confidence            333  4 9999999998876311100    010   00000 011233433332   11122269999999999999887


Q ss_pred             CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          266 DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       266 ~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ...+ .+..+.+++ +.+|+.|+++.+++.+|++.
T Consensus       197 ~~~~-~~~~~~~~~-~~~t~~eia~~~s~~~G~~v  229 (233)
T PF05368_consen  197 EKHN-NGKTIFLAG-ETLTYNEIAAILSKVLGKKV  229 (233)
T ss_dssp             GGTT-EEEEEEEGG-GEEEHHHHHHHHHHHHTSEE
T ss_pred             HHhc-CCEEEEeCC-CCCCHHHHHHHHHHHHCCcc
Confidence            6541 346777766 78999999999999999975

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.79  E-value=1e-17  Score=141.01  Aligned_cols=224  Identities=13%  Similarity=0.120  Sum_probs=140.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCC-HHHHHHHH-hccCceeEEeec
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLN-PLDIKRKL-TLLEDVTHIFWV  102 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~-~~~l~~~~-~~~~~V~~~~~~  102 (303)
                      +++|+||||||+||+.++++|+ ..||+|+++.|++.+..   ....+++++.+|+.| .+.+.+.+ .++|.|+++++.
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~   95 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLL-AKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF   95 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence            4799999999999999999999 67999999999876532   112468899999998 46777777 577877776543


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHH
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLE  182 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~  182 (303)
                      ... ..   ....++.|..++.++++++++.  +..+++++|+..+|+...       ..+..+..  .+..+...+...
T Consensus        96 ~~~-~~---~~~~~~~n~~~~~~ll~a~~~~--~~~~iV~iSS~~v~g~~~-------~~~~~~~~--~~~~~~~~~~~~  160 (251)
T PLN00141         96 RRS-FD---PFAPWKVDNFGTVNLVEACRKA--GVTRFILVSSILVNGAAM-------GQILNPAY--IFLNLFGLTLVA  160 (251)
T ss_pred             CcC-CC---CCCceeeehHHHHHHHHHHHHc--CCCEEEEEccccccCCCc-------ccccCcch--hHHHHHHHHHHH
Confidence            211 11   1123577888999999999865  344666666555564221       11111100  001110112233


Q ss_pred             HHHHHH-hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          183 DLLKEK-LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       183 k~~~e~-~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      |...|. .... ++++++||+.+++....                   +.....++.     ..+...++.+|+|+.+++
T Consensus       161 k~~~e~~l~~~gi~~~iirpg~~~~~~~~-------------------~~~~~~~~~-----~~~~~~i~~~dvA~~~~~  216 (251)
T PLN00141        161 KLQAEKYIRKSGINYTIVRPGGLTNDPPT-------------------GNIVMEPED-----TLYEGSISRDQVAEVAVE  216 (251)
T ss_pred             HHHHHHHHHhcCCcEEEEECCCccCCCCC-------------------ceEEECCCC-----ccccCcccHHHHHHHHHH
Confidence            444441 1222 99999999999974211                   001111110     111235788999999999


Q ss_pred             HhcCcCCcCCCCceEEeec---CCCccHHhhHHHHHH
Q 042242          261 VATNDDISSTKGQAFNAIN---GPRFTWKEIWPSIGK  294 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~---~~~~s~~e~~~~i~~  294 (303)
                      ++..+...+   .++.+.+   +...++.+++..+++
T Consensus       217 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  250 (251)
T PLN00141        217 ALLCPESSY---KVVEIVARADAPKRSYKDLFASIKQ  250 (251)
T ss_pred             HhcChhhcC---cEEEEecCCCCCchhHHHHHHHhhc
Confidence            998876543   6788875   334789999888764

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.79  E-value=3.5e-17  Score=168.09  Aligned_cols=259  Identities=17%  Similarity=0.108  Sum_probs=158.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC---CCeEEEEecCCcccc----c-------------cCCCeEEEEecCCC-----
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA---NWKVYGIARKPEITA----I-------------QSSSYCFISCDLLN-----   82 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~---g~~V~~~~r~~~~~~----~-------------~~~~~~~~~~D~~~-----   82 (303)
                      .++|+|||||||||++++++|++..   .++|+++.|......    .             ...+++++.+|+.+     
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            5799999999999999999999432   378999999754321    0             01368899999974     


Q ss_pred             -HHHHHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCC--c--
Q 042242           83 -PLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLP--E--  157 (303)
Q Consensus        83 -~~~l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~--g--  157 (303)
                       .+.+.++...+|.|+|+++........ .  .....|+.++.+++++|...  +..+++++|+..+|+......  +  
T Consensus      1051 ~~~~~~~l~~~~d~iiH~Aa~~~~~~~~-~--~~~~~nv~gt~~ll~~a~~~--~~~~~v~vSS~~v~~~~~~~~~~~~~ 1125 (1389)
T TIGR03443      1051 SDEKWSDLTNEVDVIIHNGALVHWVYPY-S--KLRDANVIGTINVLNLCAEG--KAKQFSFVSSTSALDTEYYVNLSDEL 1125 (1389)
T ss_pred             CHHHHHHHHhcCCEEEECCcEecCccCH-H--HHHHhHHHHHHHHHHHHHhC--CCceEEEEeCeeecCcccccchhhhh
Confidence             355667777888899997764332222 2  24568999999999999865  234555555555664211000  0  


Q ss_pred             -ccccCCcCcCCCCCC--CCccchHHHHHHHHHHh----cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCC
Q 042242          158 -EKQVRFYDEECPRVS--KSNNFYYVLEDLLKEKL----AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLN  229 (303)
Q Consensus       158 -~~~~~~~~e~~~~~p--~~~~~~y~~~k~~~e~~----~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  229 (303)
                       .....++.|+.+..+  ..+...|+.+|++.|..    ... ++++++||+.|||+......+....+.....-+...+
T Consensus      1126 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~ 1205 (1389)
T TIGR03443      1126 VQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLG 1205 (1389)
T ss_pred             hhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhC
Confidence             000112233322211  11122388888877721    112 9999999999999743221111111111111111112


Q ss_pred             CceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          230 LPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       230 ~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ..  ..+      ....++++++++|++++.++..+... ..+.+||++++..+++.++++.+.+. |.+.+
T Consensus      1206 ~~--p~~------~~~~~~~~Vddva~ai~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~~ 1267 (1389)
T TIGR03443      1206 LI--PNI------NNTVNMVPVDHVARVVVAAALNPPKE-SELAVAHVTGHPRIRFNDFLGTLKTY-GYDVE 1267 (1389)
T ss_pred             Cc--CCC------CCccccccHHHHHHHHHHHHhCCccc-CCCCEEEeCCCCCCcHHHHHHHHHHh-CCCCC
Confidence            11  011      23356888999999999988765321 12368999999999999999999754 55543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=4.3e-17  Score=138.58  Aligned_cols=170  Identities=20%  Similarity=0.147  Sum_probs=112.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----------------ccCCCeEEEEecCCCH------HH
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----------------IQSSSYCFISCDLLNP------LD   85 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----------------~~~~~~~~~~~D~~~~------~~   85 (303)
                      ++||+||||||+|.+|+..|+.....+|+++.|..+...                 .-..+++++.+|+..+      ..
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            479999999999999999999555568999999876321                 1235899999999854      45


Q ss_pred             HHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           86 IKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        86 l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      ++.....+|.|+|.++....-.... .  ....|+.|+..+++.|... .+.+.++|+++   ++.......+   ....
T Consensus        81 ~~~La~~vD~I~H~gA~Vn~v~pYs-~--L~~~NVlGT~evlrLa~~gk~Kp~~yVSsis---v~~~~~~~~~---~~~~  151 (382)
T COG3320          81 WQELAENVDLIIHNAALVNHVFPYS-E--LRGANVLGTAEVLRLAATGKPKPLHYVSSIS---VGETEYYSNF---TVDF  151 (382)
T ss_pred             HHHHhhhcceEEecchhhcccCcHH-H--hcCcchHhHHHHHHHHhcCCCceeEEEeeee---eccccccCCC---cccc
Confidence            6667777888999976654333332 2  6899999999999999876 44455555555   2211100000   1111


Q ss_pred             CcCCCCC-C-CCccchHHHHHHHHHHh------cCCcceEEecCCceeecCC
Q 042242          165 DEECPRV-S-KSNNFYYVLEDLLKEKL------AGKVAWSVHRPGLLLGSSH  208 (303)
Q Consensus       165 ~e~~~~~-p-~~~~~~y~~~k~~~e~~------~~~~~~~ilRp~~v~G~~~  208 (303)
                      ++.++.. + ..+...|+++|+..|..      .+ ++++|+||+.|.|+..
T Consensus       152 ~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rG-Lpv~I~Rpg~I~gds~  202 (382)
T COG3320         152 DEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDRG-LPVTIFRPGYITGDSR  202 (382)
T ss_pred             ccccccccccCccCCCcchhHHHHHHHHHHHhhcC-CCeEEEecCeeeccCc
Confidence            1222211 1 11122377777777732      23 9999999999999754

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.8e-17  Score=141.40  Aligned_cols=234  Identities=12%  Similarity=0.014  Sum_probs=145.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      |+|+|+||||+|+||++++++|+ +.|++|++++|++.+..    .....+.++++|++|.+++.+.++.       +|.
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAAL-ERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDI   80 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            56899999999999999999999 67999999999875432    1134577889999999988777664       356


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      |+|+++....    .....+..+.+++|+.++..+++.+...  .....+++.+++...+.+.          +      
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------~------  144 (275)
T PRK08263         81 VVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAF----------P------  144 (275)
T ss_pred             EEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCC----------C------
Confidence            8888765432    1233455568999999998888876432  1122345554443222111          0      


Q ss_pred             CCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          170 RVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                        ...+   |+.+|...+     +    . .+ ++++++||+.+..+..............+..+...     ....   
T Consensus       145 --~~~~---Y~~sKaa~~~~~~~la~e~~~~g-i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~-----~~~~---  210 (275)
T PRK08263        145 --MSGI---YHASKWALEGMSEALAQEVAEFG-IKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREE-----LAEQ---  210 (275)
T ss_pred             --CccH---HHHHHHHHHHHHHHHHHHhhhhC-cEEEEEecCCccCCccccccccCCCchhhhhHHHH-----HHHH---
Confidence              0123   677666543     1    1 23 99999999988774322110000000000000000     0000   


Q ss_pred             hhhhhcccC-ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          240 IWEEYCLDG-SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       240 ~~~~~~~~~-~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                         .....+ .+++|+|++++.++..+...+   ..|+..++..+++.++.+.+.++-+
T Consensus       211 ---~~~~~~~~~p~dva~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  263 (275)
T PRK08263        211 ---WSERSVDGDPEAAAEALLKLVDAENPPL---RLFLGSGVLDLAKADYERRLATWEE  263 (275)
T ss_pred             ---HHhccCCCCHHHHHHHHHHHHcCCCCCe---EEEeCchHHHHHHHHHHHHHHHHHH
Confidence               111224 788999999999988775443   5555556678999999999988644

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.77  E-value=3.8e-17  Score=148.23  Aligned_cols=224  Identities=17%  Similarity=0.141  Sum_probs=138.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----------------cCCCeEEEEecCCCHHHHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----------------QSSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----------------~~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      ++++||||||+|+||++++++|+ +.|++|++++|+..+...                ...+++++.+|+.|.+++.+.+
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELL-KLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            56899999999999999999999 689999999998765320                0125788999999999999999


Q ss_pred             hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        91 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .++|.|||+++.....  ..+....+++|+.++.+++++++..+  ..+++++++...+.     .+      .... ..
T Consensus       158 ggiDiVVn~AG~~~~~--v~d~~~~~~VN~~Gt~nLl~Aa~~ag--VgRIV~VSSiga~~-----~g------~p~~-~~  221 (576)
T PLN03209        158 GNASVVICCIGASEKE--VFDVTGPYRIDYLATKNLVDAATVAK--VNHFILVTSLGTNK-----VG------FPAA-IL  221 (576)
T ss_pred             cCCCEEEEcccccccc--ccchhhHHHHHHHHHHHHHHHHHHhC--CCEEEEEccchhcc-----cC------cccc-ch
Confidence            9999888887653221  11223368899999999999998763  34555555421210     00      0000 00


Q ss_pred             CCCCccchHHHHHHHHH-Hh--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhccc
Q 042242          171 VSKSNNFYYVLEDLLKE-KL--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLD  247 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e-~~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  247 (303)
                        . ..+.|...+...+ ..  .+ ++|+++||+.++++.......   .           .......+      ..+..
T Consensus       222 --~-sk~~~~~~KraaE~~L~~sG-IrvTIVRPG~L~tp~d~~~~t---~-----------~v~~~~~d------~~~gr  277 (576)
T PLN03209        222 --N-LFWGVLCWKRKAEEALIASG-LPYTIVRPGGMERPTDAYKET---H-----------NLTLSEED------TLFGG  277 (576)
T ss_pred             --h-hHHHHHHHHHHHHHHHHHcC-CCEEEEECCeecCCccccccc---c-----------ceeecccc------ccCCC
Confidence              0 1111322232222 22  24 999999999998753221100   0           00000000      01112


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHH
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIG  293 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~  293 (303)
                      .+..+|||..+++++.++...  .+.+|.+.++.......+.+.+.
T Consensus       278 ~isreDVA~vVvfLasd~~as--~~kvvevi~~~~~p~~~~~~~~~  321 (576)
T PLN03209        278 QVSNLQVAELMACMAKNRRLS--YCKVVEVIAETTAPLTPMEELLA  321 (576)
T ss_pred             ccCHHHHHHHHHHHHcCchhc--cceEEEEEeCCCCCCCCHHHHHH
Confidence            456788999999988866532  13789998876433344444443

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.77  E-value=8.9e-17  Score=134.81  Aligned_cols=214  Identities=13%  Similarity=0.086  Sum_probs=135.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++++||||||||+||++|+++|+ +.|++|+++.|+.....        ....+++++.+|+.|.+++.+++++     
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLA-RAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERF   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHc
Confidence            456799999999999999999999 68999988887755321        1234688899999999998887764     


Q ss_pred             --cCceeEEeecccccC----ChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTWASQ----FASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        .|.|+|+++......    ......+.++.|+.++.++++.+.+.  .....++++.|+...+.+.            
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~------------  150 (249)
T PRK12825         83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGW------------  150 (249)
T ss_pred             CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCC------------
Confidence              366889876533222    34444567899999999999988543  1123455555443222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----H---h--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----K---L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~---~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+...   |..+|...+     +   .  .+ ++++++||+.++|+......   ....    ..   ..+   
T Consensus       151 ------~~~~~---y~~sK~~~~~~~~~~~~~~~~~~-i~~~~i~pg~~~~~~~~~~~---~~~~----~~---~~~---  207 (249)
T PRK12825        151 ------PGRSN---YAAAKAGLVGLTKALARELAEYG-ITVNMVAPGDIDTDMKEATI---EEAR----EA---KDA---  207 (249)
T ss_pred             ------CCchH---HHHHHHHHHHHHHHHHHHHhhcC-eEEEEEEECCccCCcccccc---chhH----Hh---hhc---
Confidence                  00112   565554332     1   1  23 99999999999995422110   1100    00   000   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                       .      ..+..+++.+|+++++.+++...... ..|+.|+++++..+
T Consensus       208 -~------~~~~~~~~~~dva~~~~~~~~~~~~~-~~g~~~~i~~g~~~  248 (249)
T PRK12825        208 -E------TPLGRSGTPEDIARAVAFLCSDASDY-ITGQVIEVTGGVDV  248 (249)
T ss_pred             -c------CCCCCCcCHHHHHHHHHHHhCccccC-cCCCEEEeCCCEee
Confidence             0      11122678889999999988665322 34689999988653

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.75  E-value=3.7e-16  Score=133.42  Aligned_cols=233  Identities=14%  Similarity=0.099  Sum_probs=146.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc----CCCeEEEEecCCCHHHHHHHHh-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ----SSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      +.+|+++||||+|+||++++++|+ +.|++|++++|++.+..     ..    ..++.++.+|+.|.+++.+.++     
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLV-AAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999 68999999999865421     00    1357788999999998888776     


Q ss_pred             --ccCceeEEeecc-----cccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccC
Q 042242           92 --LLEDVTHIFWVT-----WASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 --~~~~V~~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                        .+|.++|+++..     ....+..+..+.++.|+.++..+++++.+..  ..-.+++.+++...+...          
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~----------  153 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH----------  153 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC----------
Confidence              456788887642     1222334445678899999999998876541  112244444432222000          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            +  +..+   |+.+|...+     +.   ... ++++++||+.+.++........ ...  ......  ..+  
T Consensus       154 ------~--~~~~---Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-~~~--~~~~~~--~~~--  215 (276)
T PRK05875        154 ------R--WFGA---YGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITES-PEL--SADYRA--CTP--  215 (276)
T ss_pred             ------C--CCcc---hHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccC-HHH--HHHHHc--CCC--
Confidence                  0  1233   677665554     11   122 8999999998876422111000 000  000000  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc----cHHhhHHHHHHHhccc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF----TWKEIWPSIGKKFGVK  299 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~----s~~e~~~~i~~~~g~~  299 (303)
                                 +..+.+++|+|.++++++..+... ..|++|+++++..+    +..|+++.+....|+.
T Consensus       216 -----------~~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  273 (276)
T PRK05875        216 -----------LPRVGEVEDVANLAMFLLSDAASW-ITGQVINVDGGHMLRRGPDFSSMLEPVFGADGLR  273 (276)
T ss_pred             -----------CCCCcCHHHHHHHHHHHcCchhcC-cCCCEEEECCCeeccCCccHHHHHHHHhhHHHHh
Confidence                       122567899999999998765432 23589999988765    7788888777665543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.74  E-value=2.2e-16  Score=132.71  Aligned_cols=214  Identities=14%  Similarity=0.082  Sum_probs=134.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..       ....++.++.+|+.|.+++.+.+++      
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            457899999999999999999999 68999999999854321       1123588899999999998888864      


Q ss_pred             -cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       +|.|+|+++....    ..+..+..+.++.|+.++.++++++...  ..+..+++.+++...+..           +. 
T Consensus        83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~-----------~~-  150 (251)
T PRK12826         83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV-----------GY-  150 (251)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc-----------CC-
Confidence             4668888654322    2233444568899999999999988643  122334454444322200           00 


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H---h--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K---L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~---~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+..+   |+.+|...+     +   .  .+ ++++++||+.++|+.......  ..+  ...+..  ..|    
T Consensus       151 -----~~~~~---y~~sK~a~~~~~~~~~~~~~~~~-i~~~~i~pg~~~~~~~~~~~~--~~~--~~~~~~--~~~----  211 (251)
T PRK12826        151 -----PGLAH---YAASKAGLVGFTRALALELAARN-ITVNSVHPGGVDTPMAGNLGD--AQW--AEAIAA--AIP----  211 (251)
T ss_pred             -----CCccH---HHHHHHHHHHHHHHHHHHHHHcC-eEEEEEeeCCCCcchhhhcCc--hHH--HHHHHh--cCC----
Confidence                 00122   666554322     1   1  23 899999999999964322111  000  000100  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               +..+++++|+|.++..++..+... ..|++|++.++.
T Consensus       212 ---------~~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~~g~  247 (251)
T PRK12826        212 ---------LGRLGEPEDIAAAVLFLASDEARY-ITGQTLPVDGGA  247 (251)
T ss_pred             ---------CCCCcCHHHHHHHHHHHhCccccC-cCCcEEEECCCc
Confidence                     113678899999998877554321 346899998765

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.72  E-value=5.2e-16  Score=131.08  Aligned_cols=226  Identities=15%  Similarity=0.145  Sum_probs=142.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      |+++++||||+|+||+.++++|+ +.|++|++++|++.+..     ....+++++.+|+.|.+++...++.       +|
T Consensus         1 ~~k~ilItGat~~iG~~la~~L~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   79 (257)
T PRK07074          1 TKRTALVTGAAGGIGQALARRFL-AAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVD   79 (257)
T ss_pred             CCCEEEEECCcchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            46799999999999999999999 68999999999865432     1123578899999999998877765       56


Q ss_pred             ceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .|+|+++.....    .........++.|+.++..+++++...  .....++++.++...+  .  .+|           
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~--~--~~~-----------  144 (257)
T PRK07074         80 VLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGM--A--ALG-----------  144 (257)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc--C--CCC-----------
Confidence            788887643211    122333345789999999998888543  1122344444432111  0  000           


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                          ...   |+.+|...+         +. .+ +++.++||+.++++...........+  ....              
T Consensus       145 ----~~~---y~~sK~a~~~~~~~~a~~~~~~g-i~v~~v~pg~v~t~~~~~~~~~~~~~--~~~~--------------  200 (257)
T PRK07074        145 ----HPA---YSAAKAGLIHYTKLLAVEYGRFG-IRANAVAPGTVKTQAWEARVAANPQV--FEEL--------------  200 (257)
T ss_pred             ----Ccc---cHHHHHHHHHHHHHHHHHHhHhC-eEEEEEEeCcCCcchhhcccccChHH--HHHH--------------
Confidence                012   454444332         11 23 89999999999874321110000000  0000              


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHH
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGK  294 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~  294 (303)
                      ..+ ..+.++++++|+++++++++...... ..|..+++.++...+..|+.+.+.+
T Consensus       201 ~~~-~~~~~~~~~~d~a~~~~~l~~~~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~  254 (257)
T PRK07074        201 KKW-YPLQDFATPDDVANAVLFLASPAARA-ITGVCLPVDGGLTAGNREMARTLTL  254 (257)
T ss_pred             Hhc-CCCCCCCCHHHHHHHHHHHcCchhcC-cCCcEEEeCCCcCcCChhhhhhhcc
Confidence            001 22345788999999999988543221 3458899999999999999998764

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.72  E-value=2.1e-16  Score=132.82  Aligned_cols=217  Identities=18%  Similarity=0.066  Sum_probs=133.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++++++||||+|+||++++++|+ ..|++|++++|+.....      .  ...++.++.+|++|.+++.++++.     
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~-~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILA-GAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            346899999999999999999999 68999999999754211      1  123577889999999998877763     


Q ss_pred             --cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           93 --LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        93 --~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                        +|.|+|.++.....  ...+.+.+++|+.++.++++++.+...+-.+++++|+...+           ..+..+..+.
T Consensus        83 ~~~d~vi~~ag~~~~~--~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~-----------~~~~~~~~~~  149 (248)
T PRK07806         83 GGLDALVLNASGGMES--GMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAH-----------FIPTVKTMPE  149 (248)
T ss_pred             CCCcEEEECCCCCCCC--CCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhh-----------cCccccCCcc
Confidence              45578876543211  11223468899999999999998752221244444432111           0000011111


Q ss_pred             CCCCccchHHHHHHHHHH-----h---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch-hh
Q 042242          171 VSKSNNFYYVLEDLLKEK-----L---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR-EI  240 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e~-----~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~  240 (303)
                        ..+   |+.+|...+.     .   ... +++++++|+.+-++...       .+.     .+  ..+    +.. ..
T Consensus       150 --~~~---Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~-------~~~-----~~--~~~----~~~~~~  206 (248)
T PRK07806        150 --YEP---VARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA-------TLL-----NR--LNP----GAIEAR  206 (248)
T ss_pred             --ccH---HHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh-------hhh-----cc--CCH----HHHHHH
Confidence              123   7777766551     1   122 88888888776653110       000     00  000    000 01


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      + .....+.+++|+|++++.++..+...   |++|++++++..
T Consensus       207 ~-~~~~~~~~~~dva~~~~~l~~~~~~~---g~~~~i~~~~~~  245 (248)
T PRK07806        207 R-EAAGKLYTVSEFAAEVARAVTAPVPS---GHIEYVGGADYF  245 (248)
T ss_pred             H-hhhcccCCHHHHHHHHHHHhhccccC---ccEEEecCccce
Confidence            1 23345889999999999999866444   489999998753

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.72  E-value=2e-16  Score=133.99  Aligned_cols=222  Identities=17%  Similarity=0.030  Sum_probs=130.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      ++++++|||||+|+||+++++.|+ +.|++|++++|++....     .  ....+.++++|++|.+++.++++.      
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELA-RAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999 68999999999875421     1  123467889999999988887764      


Q ss_pred             -cCceeEEeeccccc----CChHHHHHHHHHHHHH----HHHHHHHH-hhccCCccEEEEeecccccccccCCCcccccC
Q 042242           93 -LEDVTHIFWVTWAS----QFASDMHKCCEQNKAM----MCNALNAI-LPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 -~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~----~~~ll~~~-~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                       +|.|+|+++.....    .......+.+++|+.+    +..+++.+ +..  ...+++.+|+...+..          .
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~~~~iv~~ss~~~~~~----------~  151 (262)
T PRK13394         84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD--RGGVVIYMGSVHSHEA----------S  151 (262)
T ss_pred             CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--CCcEEEEEcchhhcCC----------C
Confidence             56689997653221    1233444578899999    55556655 332  2234444443211100          0


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccch-hhHHH-HHHHHhhhCCCc
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNF-LGCLC-VYGAVCKHLNLP  231 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~-~~~~~-~~~~~~~~~~~~  231 (303)
                      +        +...   |+.+|...+        ..... ++++++||+.++++.....+.. ..... ......+    .
T Consensus       152 ~--------~~~~---y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~----~  216 (262)
T PRK13394        152 P--------LKSA---YVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVK----K  216 (262)
T ss_pred             C--------CCcc---cHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHH----H
Confidence            0        0112   444433222        11122 9999999999998532211100 00000 0000000    0


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      +...+      .....+++++|++.++++++..+... ..|+.|++.++..
T Consensus       217 ~~~~~------~~~~~~~~~~dva~a~~~l~~~~~~~-~~g~~~~~~~g~~  260 (262)
T PRK13394        217 VMLGK------TVDGVFTTVEDVAQTVLFLSSFPSAA-LTGQSFVVSHGWF  260 (262)
T ss_pred             HHhcC------CCCCCCCCHHHHHHHHHHHcCccccC-CcCCEEeeCCcee
Confidence            00011      23345889999999999888654322 3458898887743

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.70  E-value=6.1e-16  Score=130.70  Aligned_cols=226  Identities=12%  Similarity=0.017  Sum_probs=136.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++++++||||+|+||++++++|+ +.|++|++++|+.....    .....+.++.+|++|.+++.++++.       +|.
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYL-AEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999 68999999999876432    1123578889999999988887764       456


Q ss_pred             eeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-C--CccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           96 VTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA-K--ALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        96 V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~--~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      ++|+++...    ......+..+.++.|+.++..+++++.... .  .-.+++.+++....      +      +.    
T Consensus        84 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------~------~~----  147 (257)
T PRK07067         84 LFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR------R------GE----  147 (257)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC------C------CC----
Confidence            888865432    122334455689999999999999987541 1  11244444432111      0      00    


Q ss_pred             CCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +  +...   |+.+|...+     ..   ... +++++++|+.++++.......   ....+.....  +......+.  
T Consensus       148 ~--~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~---~~~~~~~~~~--~~~~~~~~~--  215 (257)
T PRK07067        148 A--LVSH---YCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDA---LFARYENRPP--GEKKRLVGE--  215 (257)
T ss_pred             C--CCch---hhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhh---hhhhccCCCH--HHHHHHHhh--
Confidence            0  1222   666554332     11   122 999999999999853111000   0000000000  000000000  


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                       . ..+..+.+++|+|.++++++..+... ..|++|++.+++.+|
T Consensus       216 -~-~~~~~~~~~~dva~~~~~l~s~~~~~-~~g~~~~v~gg~~~~  257 (257)
T PRK07067        216 -A-VPLGRMGVPDDLTGMALFLASADADY-IVAQTYNVDGGNWMS  257 (257)
T ss_pred             -c-CCCCCccCHHHHHHHHHHHhCccccc-ccCcEEeecCCEeCC
Confidence             0 22345778899999999988765332 346899999886543

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.70  E-value=3.9e-15  Score=125.20  Aligned_cols=213  Identities=14%  Similarity=0.124  Sum_probs=134.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      ++|+++||||+|+||++++++|+ ..|++|++++|++....     .  ...++..+.+|++|.+++.++++.       
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~-~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALA-REGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999 68999999999865321     0  123567889999999988776653       


Q ss_pred             cCceeEEeeccc-------ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCC
Q 042242           93 LEDVTHIFWVTW-------ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ~~~V~~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                      +|.|||+++...       ...+.....+.+++|+.++.++++++....  .+..+++..++...|.             
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------  150 (250)
T PRK07774         84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL-------------  150 (250)
T ss_pred             CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-------------
Confidence            567999876421       122334445578999999999999988651  1123455444432221             


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                              +..+   |+.+|...+     +.   ... +++++++|+.+..+......   ... ......+  ..+.. 
T Consensus       151 --------~~~~---Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~---~~~-~~~~~~~--~~~~~-  212 (250)
T PRK07774        151 --------YSNF---YGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVT---PKE-FVADMVK--GIPLS-  212 (250)
T ss_pred             --------Cccc---cHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccC---CHH-HHHHHHh--cCCCC-
Confidence                    1223   666555443     11   112 89999999988774322110   111 1111111  11111 


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                                  -..+++|+|.+++.++...... ..|++||+.++..++
T Consensus       213 ------------~~~~~~d~a~~~~~~~~~~~~~-~~g~~~~v~~g~~~~  249 (250)
T PRK07774        213 ------------RMGTPEDLVGMCLFLLSDEASW-ITGQIFNVDGGQIIR  249 (250)
T ss_pred             ------------CCcCHHHHHHHHHHHhChhhhC-cCCCEEEECCCeecc
Confidence                        1346788999998887654321 345899999887654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.70  E-value=5.9e-16  Score=130.48  Aligned_cols=215  Identities=16%  Similarity=0.119  Sum_probs=129.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      +++|||||+|+||++++++|+ +.|++|++++|++....       ....++.++++|+.|.+++..+++.       .|
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALA-AAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            689999999999999999999 68999999999865431       0123578899999999977665543       46


Q ss_pred             ceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .|+|+++.....    ....+..+.++.|+.++..+++.+...  .....+++++++...+.+.          +.    
T Consensus        81 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~----------~~----  146 (255)
T TIGR01963        81 ILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVAS----------PF----  146 (255)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCC----------CC----
Confidence            688887653321    123334457789999988888877532  1122345454442222110          00    


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce------
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF------  232 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~------  232 (303)
                          ..+   |..+|...+         .. .+ ++++++||+.++++.....   ...      .......+.      
T Consensus       147 ----~~~---y~~sk~a~~~~~~~~~~~~~~~~-i~v~~i~pg~v~~~~~~~~---~~~------~~~~~~~~~~~~~~~  209 (255)
T TIGR01963       147 ----KSA---YVAAKHGLIGLTKVLALEVAAHG-ITVNAICPGYVRTPLVEKQ---IAD------QAKTRGIPEEQVIRE  209 (255)
T ss_pred             ----Cch---hHHHHHHHHHHHHHHHHHhhhcC-eEEEEEecCccccHHHHHH---HHh------hhcccCCCchHHHHH
Confidence                112   444433221         11 23 9999999999998531110   000      000000000      


Q ss_pred             -eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          233 -VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       233 -~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       ..++      .....+++++|+|.++++++..+... ..|+.|++.++..
T Consensus       210 ~~~~~------~~~~~~~~~~d~a~~~~~~~~~~~~~-~~g~~~~~~~g~~  253 (255)
T TIGR01963       210 VMLPG------QPTKRFVTVDEVAETALFLASDAAAG-ITGQAIVLDGGWT  253 (255)
T ss_pred             HHHcc------CccccCcCHHHHHHHHHHHcCccccC-ccceEEEEcCccc
Confidence             0011      23345789999999999988764221 3358899988754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.70  E-value=2e-15  Score=126.39  Aligned_cols=213  Identities=15%  Similarity=0.151  Sum_probs=132.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhcc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTLL-----   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~~-----   93 (303)
                      +++++|+||||+|+||++++++|+ +.|++|++++|++.+..     .  ...++.++.+|+.|++++.++++++     
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLA-ADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG   81 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            345799999999999999999999 68999999999875422     1  1235778889999999888877653     


Q ss_pred             --CceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 --EDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 --~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        |.|+|+++.....    .......+.++.|+.+..++++++...  .....+++.+++....      ++        
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~------~~--------  147 (246)
T PRK05653         82 ALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGV------TG--------  147 (246)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc------cC--------
Confidence              6688886543221    123334457899999999999888653  1223455555542111      00        


Q ss_pred             cCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          ..+..+   |..+|...+        ..... ++++++||+.++++.....    .... ......  ..+     
T Consensus       148 ----~~~~~~---y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~----~~~~-~~~~~~--~~~-----  208 (246)
T PRK05653        148 ----NPGQTN---YSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGL----PEEV-KAEILK--EIP-----  208 (246)
T ss_pred             ----CCCCcH---hHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhh----hHHH-HHHHHh--cCC-----
Confidence                000122   555443222        11122 8999999999998543210    0100 000000  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              +..+++.+|+++.+.+++..... ...|+.|+++++.
T Consensus       209 --------~~~~~~~~dva~~~~~~~~~~~~-~~~g~~~~~~gg~  244 (246)
T PRK05653        209 --------LGRLGQPEEVANAVAFLASDAAS-YITGQVIPVNGGM  244 (246)
T ss_pred             --------CCCCcCHHHHHHHHHHHcCchhc-CccCCEEEeCCCe
Confidence                    12356788999999888754332 1346899998875

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.70  E-value=2.6e-15  Score=125.20  Aligned_cols=205  Identities=16%  Similarity=0.134  Sum_probs=131.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      ++|+||||||+|+||+.++++|+ +.|++|++++|++.+..     ......+++.+|+.|.+++.++++.       +|
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLA-ARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHH-HCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            46899999999999999999999 67999999999765421     2234577888999999988877764       46


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .|+|.++....    ........+.++.|+.++.++++++.+.  .....+++..++...|...                
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------  148 (239)
T PRK12828         85 ALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG----------------  148 (239)
T ss_pred             EEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC----------------
Confidence            68888654221    1223334457889999999999988653  2234456665554333111                


Q ss_pred             CCCCCCccchHHHHHHHH-----HHh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLK-----EKL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~-----e~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +  +..+   |..+|...     ...   ... +++.++||+.++++....                  ..+    .   
T Consensus       149 ~--~~~~---y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~------------------~~~----~---  198 (239)
T PRK12828        149 P--GMGA---YAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRA------------------DMP----D---  198 (239)
T ss_pred             C--Ccch---hHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhh------------------cCC----c---
Confidence            0  0122   55544322     211   112 999999999999841110                  001    0   


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                         ..+..+++++|+|.++++++.+.... ..|+.+++.++..
T Consensus       199 ---~~~~~~~~~~dva~~~~~~l~~~~~~-~~g~~~~~~g~~~  237 (239)
T PRK12828        199 ---ADFSRWVTPEQIAAVIAFLLSDEAQA-ITGASIPVDGGVA  237 (239)
T ss_pred             ---hhhhcCCCHHHHHHHHHHHhCccccc-ccceEEEecCCEe
Confidence               11122578899999998888754322 3458888888754

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.70  E-value=1.5e-15  Score=121.00  Aligned_cols=245  Identities=18%  Similarity=0.147  Sum_probs=167.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---c----------cCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---I----------QSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~----------~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      .|..||||-||.=|++|++.|+ .+||+|.++.|+.+.-.   .          ........-+|++|...+.+++.-+.
T Consensus        28 rkvALITGItGQDGSYLaEfLL-~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik  106 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLL-SKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK  106 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHH-hCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence            3578999999999999999999 79999999999987631   1          11235566799999999999988776


Q ss_pred             --ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeeccccc-ccccCCCcccccCCcCcCCC
Q 042242           95 --DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHY-VSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        95 --~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y-~~~~~~~g~~~~~~~~e~~~  169 (303)
                        .|.|+++.++..-+..-++..-++...|+.+++++.+..  ..++ +        .| .++++.||...+.|..|.+|
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~V-r--------fYQAstSElyGkv~e~PQsE~TP  177 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKV-R--------FYQASTSELYGKVQEIPQSETTP  177 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccce-e--------EEecccHhhcccccCCCcccCCC
Confidence              399999888877776666566788889999999999875  1222 2        23 34555677666889999999


Q ss_pred             CCCCCccchHHHHHHHHH-----HhcCCcceEEecCCceeec-CCCCccchhh-HHHHHHH-HhhhCCCceeeCCchhhh
Q 042242          170 RVSKSNNFYYVLEDLLKE-----KLAGKVAWSVHRPGLLLGS-SHRSLYNFLG-CLCVYGA-VCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e-----~~~~~~~~~ilRp~~v~G~-~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~g~~~~~  241 (303)
                      +.|.+|   |+..|+..-     +-.. .. ...+-|.+|.. .|+.+.++.. ++..-.+ ++.+.. ....-|+.   
T Consensus       178 FyPRSP---Ya~aKmy~~WivvNyREA-Yn-mfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqq-e~~~LGNL---  248 (376)
T KOG1372|consen  178 FYPRSP---YAAAKMYGYWIVVNYREA-YN-MFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQ-EKIELGNL---  248 (376)
T ss_pred             CCCCCh---hHHhhhhheEEEEEhHHh-hc-ceeeccEeecCCCCccccchhhHHHHHHHHHhhhcce-eeEEecch---
Confidence            999999   998887654     1111 00 11122334432 1222333322 2221111 222222 23445554   


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                       ....++-++.|-++++...++++..     .-|-|+.++..|++|+.+.-...+|
T Consensus       249 -~a~RDWGhA~dYVEAMW~mLQ~d~P-----dDfViATge~hsVrEF~~~aF~~ig  298 (376)
T KOG1372|consen  249 -SALRDWGHAGDYVEAMWLMLQQDSP-----DDFVIATGEQHSVREFCNLAFAEIG  298 (376)
T ss_pred             -hhhcccchhHHHHHHHHHHHhcCCC-----CceEEecCCcccHHHHHHHHHHhhC
Confidence             5667778888888877666655543     4599999999999999987776666

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.69  E-value=3.3e-15  Score=127.82  Aligned_cols=220  Identities=15%  Similarity=0.075  Sum_probs=132.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc----CCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ----SSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++++|||||+|+||+++++.|+ +.|++|++++|++....     ..    ..+++++.+|+.|+++++. ++.     
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~   79 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELA-KKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI   79 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence            56789999999999999999999 68999999999865421     00    2368889999999988776 543     


Q ss_pred             --cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        +|.|+|+++.....    ....+..+.+++|+.++.++++.+.+..  .+..+++++++...+.+.            
T Consensus        80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------  147 (280)
T PRK06914         80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGF------------  147 (280)
T ss_pred             CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCC------------
Confidence              35588886543321    1233444578899999998888865431  122344444432111000            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccch-----h--hHHHHH-HHHhhh
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNF-----L--GCLCVY-GAVCKH  227 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~-----~--~~~~~~-~~~~~~  227 (303)
                            .+..+   |+.+|...+     +.   ... ++++++||+.+.++........     .  ...... ..+...
T Consensus       148 ------~~~~~---Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (280)
T PRK06914        148 ------PGLSP---YVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKH  218 (280)
T ss_pred             ------CCCch---hHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHH
Confidence                  01223   555444432     11   122 9999999999988521110000     0  000000 000000


Q ss_pred             CCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHH
Q 042242          228 LNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWK  286 (303)
Q Consensus       228 ~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~  286 (303)
                             ..      .....+.+++|+|.+++.++.++...    ..|+++++..+++.
T Consensus       219 -------~~------~~~~~~~~~~dva~~~~~~~~~~~~~----~~~~~~~~~~~~~~  260 (280)
T PRK06914        219 -------IN------SGSDTFGNPIDVANLIVEIAESKRPK----LRYPIGKGVKLMIL  260 (280)
T ss_pred             -------Hh------hhhhccCCHHHHHHHHHHHHcCCCCC----cccccCCchHHHHH
Confidence                   00      11123678899999999999877542    46988877766555

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.69  E-value=7e-16  Score=130.46  Aligned_cols=222  Identities=15%  Similarity=0.041  Sum_probs=131.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc----CCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ----SSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      |+|+|+||||+|+||+++++.|+ +.|++|++++|+.....     ..    ...+.++.+|++|.+++.++++.     
T Consensus         1 m~k~ilItG~~~~IG~~la~~l~-~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   79 (259)
T PRK12384          1 MNQVAVVIGGGQTLGAFLCHGLA-EEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF   79 (259)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999 68999999999765421     00    13578899999999888776654     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ccEEEEeeccc-ccccccCCCcccccC
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KA-LKHVSLQTGMK-HYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~~~~~~~s~~~-~y~~~~~~~g~~~~~  162 (303)
                        .|.|+|+++....    .....+....++.|+.++..+++++.+..  .. -.+++.+++.. .++..          
T Consensus        80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~----------  149 (259)
T PRK12384         80 GRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSK----------  149 (259)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCC----------
Confidence              3568888764332    22333445578999999888888776541  11 12444443311 11000          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH-----H-----hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE-----K-----LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e-----~-----~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                               ...+   |+.+|...+     +     ..+ +++.++||+.+++...  .........      +..+.+.
T Consensus       150 ---------~~~~---Y~~sKaa~~~l~~~la~e~~~~g-i~v~~v~pg~~~~~~~--~~~~~~~~~------~~~~~~~  208 (259)
T PRK12384        150 ---------HNSG---YSAAKFGGVGLTQSLALDLAEYG-ITVHSLMLGNLLKSPM--FQSLLPQYA------KKLGIKP  208 (259)
T ss_pred             ---------CCch---hHHHHHHHHHHHHHHHHHHHHcC-cEEEEEecCCcccchh--hhhhhHHHH------HhcCCCh
Confidence                     0223   666655432     1     123 9999999999887321  111111110      0000000


Q ss_pred             -eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          233 -VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       233 -~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       ......... ..+..+.+++|++.+++.++..... ...|+.|++.+++.
T Consensus       209 ~~~~~~~~~~-~~~~~~~~~~dv~~~~~~l~~~~~~-~~~G~~~~v~~g~~  257 (259)
T PRK12384        209 DEVEQYYIDK-VPLKRGCDYQDVLNMLLFYASPKAS-YCTGQSINVTGGQV  257 (259)
T ss_pred             HHHHHHHHHh-CcccCCCCHHHHHHHHHHHcCcccc-cccCceEEEcCCEE
Confidence             000000000 2233467889999999888765432 13458899998764

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.69  E-value=1e-15  Score=129.20  Aligned_cols=217  Identities=16%  Similarity=0.069  Sum_probs=130.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .+++|+||||+|+||++++++|+ ..|++|++++|++.+..     .  ...+++++.+|+.|.+++.++++.       
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALA-KEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG   81 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999 68999999999876532     1  124678899999999998887764       


Q ss_pred             cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.|+|+++.....    .......+.+++|+.++..++..+...  .....+++++++...+.+.            . 
T Consensus        82 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~------------~-  148 (258)
T PRK12429         82 VDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS------------A-  148 (258)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC------------C-
Confidence            46688886643221    122333457789999966666665543  1234455555543222110            0 


Q ss_pred             CCCCCCCCccchHHHHHHHH--------HHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc------
Q 042242          167 ECPRVSKSNNFYYVLEDLLK--------EKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP------  231 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~--------e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~------  231 (303)
                           +..+   |...|...        +..... +++.++||+.++++......   ..      .....+.+      
T Consensus       149 -----~~~~---y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~---~~------~~~~~~~~~~~~~~  211 (258)
T PRK12429        149 -----GKAA---YVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQI---PD------LAKERGISEEEVLE  211 (258)
T ss_pred             -----Ccch---hHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhh---hh------hccccCCChHHHHH
Confidence                 0122   44433222        222222 99999999999985322110   00      00000000      


Q ss_pred             -eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 -FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 -~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                       ...+.      .....+++++|+|+++++++...... ..|+.|++.++.
T Consensus       212 ~~~~~~------~~~~~~~~~~d~a~~~~~l~~~~~~~-~~g~~~~~~~g~  255 (258)
T PRK12429        212 DVLLPL------VPQKRFTTVEEIADYALFLASFAAKG-VTGQAWVVDGGW  255 (258)
T ss_pred             HHHhcc------CCccccCCHHHHHHHHHHHcCccccC-ccCCeEEeCCCE
Confidence             00011      11234889999999998887654321 235889988764

>PRK06128 oxidoreductase; Provisional

Probab=99.69  E-value=6.6e-15  Score=127.19  Aligned_cols=216  Identities=13%  Similarity=0.065  Sum_probs=134.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      ++|+||||||+|+||++++++|+ ..|++|+++.|+.....       .  ...++.++.+|+.|.++++++++.     
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFA-REGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999 68999988877543211       1  123577889999999888777653     


Q ss_pred             --cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 --LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 --~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        +|.++|.++....     ..+.....+.+++|+.++..+++++......-.+++.+++...|....            
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~------------  200 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP------------  200 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC------------
Confidence              4668888764321     223445566899999999999999876522223455555433331110            


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                            ....   |+.+|...+     +   .... +++.+++|+.+.++..... ......  ...+..  ..|     
T Consensus       201 ------~~~~---Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~-~~~~~~--~~~~~~--~~p-----  261 (300)
T PRK06128        201 ------TLLD---YASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG-GQPPEK--IPDFGS--ETP-----  261 (300)
T ss_pred             ------Cchh---HHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC-CCCHHH--HHHHhc--CCC-----
Confidence                  0122   666655443     1   1112 9999999999998532211 000110  000100  112     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                              +..+.+.+|+|.++++++...... ..|+.|++.++..+
T Consensus       262 --------~~r~~~p~dva~~~~~l~s~~~~~-~~G~~~~v~gg~~~  299 (300)
T PRK06128        262 --------MKRPGQPVEMAPLYVLLASQESSY-VTGEVFGVTGGLLL  299 (300)
T ss_pred             --------CCCCcCHHHHHHHHHHHhCccccC-ccCcEEeeCCCEeC
Confidence                    112557789999988887654321 34689999987654

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.69  E-value=3e-15  Score=126.85  Aligned_cols=223  Identities=12%  Similarity=0.070  Sum_probs=131.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-----cCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-----QSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      ++++++|||||+|+||++++++|+ +.|++|++++|++.....     ...++.++.+|+.|++++.++++.       +
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   87 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFA-EAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGL   87 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            356899999999999999999999 689999999997654321     112468899999999998887763       5


Q ss_pred             CceeEEeecc-c----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCc-cEEEEeecccccccccCCCcccccCCcC
Q 042242           94 EDVTHIFWVT-W----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKAL-KHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 ~~V~~~~~~~-~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~-~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      |.|+|+++.. .    .........+.++.|+.++..+++++...  .... .+++..++...+      .|      ..
T Consensus        88 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~------~~------~~  155 (264)
T PRK12829         88 DVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGR------LG------YP  155 (264)
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccc------cC------CC
Confidence            6699987654 1    12233444568899999999998887543  1111 233333321111      00      00


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee-
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF-  234 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (303)
                            +..+   |+..|...+     ..     .+ ++++++||+.++|+.....   ...      ..+..+.+... 
T Consensus       156 ------~~~~---y~~~K~a~~~~~~~l~~~~~~~~-i~~~~l~pg~v~~~~~~~~---~~~------~~~~~~~~~~~~  216 (264)
T PRK12829        156 ------GRTP---YAASKWAVVGLVKSLAIELGPLG-IRVNAILPGIVRGPRMRRV---IEA------RAQQLGIGLDEM  216 (264)
T ss_pred             ------CCch---hHHHHHHHHHHHHHHHHHHhhcC-eEEEEEecCCcCChHHHHH---hhh------hhhccCCChhHH
Confidence                  0122   555444332     11     23 9999999999998532111   000      00000111000 


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ....... .....+++++|+|.+++.++...... ..|+.|+++++..
T Consensus       217 ~~~~~~~-~~~~~~~~~~d~a~~~~~l~~~~~~~-~~g~~~~i~~g~~  262 (264)
T PRK12829        217 EQEYLEK-ISLGRMVEPEDIAATALFLASPAARY-ITGQAISVDGNVE  262 (264)
T ss_pred             HHHHHhc-CCCCCCCCHHHHHHHHHHHcCccccC-ccCcEEEeCCCcc
Confidence            0000000 11223788999999988877543211 3458899988753

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.69  E-value=6.4e-15  Score=124.30  Aligned_cols=213  Identities=15%  Similarity=0.119  Sum_probs=130.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      |+|+|+||||+|+||++++++|+ +.|++|++++|+.....      .  ...++.++.+|+++.+++.++++.      
T Consensus         1 ~~k~vlItG~sg~iG~~la~~L~-~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12745          1 MRPVALVTGGRRGIGLGIARALA-AAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWG   79 (256)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHH-HCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999 68999999998754311      1  123578899999999888776653      


Q ss_pred             -cCceeEEeecccc------cCChHHHHHHHHHHHHHHHHHHHHHhhc---cCC-----ccEEEEeecccccccccCCCc
Q 042242           93 -LEDVTHIFWVTWA------SQFASDMHKCCEQNKAMMCNALNAILPR---AKA-----LKHVSLQTGMKHYVSLQGLPE  157 (303)
Q Consensus        93 -~~~V~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~-----~~~~~~~s~~~~y~~~~~~~g  157 (303)
                       +|.|+|+++....      ..+.....+.++.|+.++.++++++...   ...     ..+++.+++...+.+.     
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----  154 (256)
T PRK12745         80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS-----  154 (256)
T ss_pred             CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC-----
Confidence             4568888764321      1233445568899999999998887654   111     2344554442221110     


Q ss_pred             ccccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhh
Q 042242          158 EKQVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKH  227 (303)
Q Consensus       158 ~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  227 (303)
                             .      +..+   |+.+|...+     +.     .+ ++++++||+.+.++......   ...   ......
T Consensus       155 -------~------~~~~---Y~~sK~a~~~~~~~l~~~~~~~g-i~v~~i~pg~v~t~~~~~~~---~~~---~~~~~~  211 (256)
T PRK12745        155 -------P------NRGE---YCISKAGLSMAAQLFAARLAEEG-IGVYEVRPGLIKTDMTAPVT---AKY---DALIAK  211 (256)
T ss_pred             -------C------CCcc---cHHHHHHHHHHHHHHHHHHHHhC-CEEEEEecCCCcCccccccc---hhH---Hhhhhh
Confidence                   0      1223   665555443     11     23 89999999999884322110   111   000000


Q ss_pred             CCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          228 LNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       228 ~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ...|             +..+.+++|+++++..++..... ...|+.|++.++..
T Consensus       212 ~~~~-------------~~~~~~~~d~a~~i~~l~~~~~~-~~~G~~~~i~gg~~  252 (256)
T PRK12745        212 GLVP-------------MPRWGEPEDVARAVAALASGDLP-YSTGQAIHVDGGLS  252 (256)
T ss_pred             cCCC-------------cCCCcCHHHHHHHHHHHhCCccc-ccCCCEEEECCCee
Confidence            0111             11244778889888877654322 13458999988754

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.69  E-value=8e-15  Score=125.27  Aligned_cols=157  Identities=18%  Similarity=0.188  Sum_probs=105.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++++|+||||+|+||++++++|+ ..|++|++++|++.+..    ....++.++.+|+.|.+++.+.++.       +|.
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~   81 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAAL-AAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV   81 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHH-hCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            35789999999999999999999 68999999999876432    1123577889999999988877764       466


Q ss_pred             eeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      |+|+++.....    .......+.+++|+.++.++++++...  .....+++.+|+...+.+.                +
T Consensus        82 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~----------------~  145 (277)
T PRK06180         82 LVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM----------------P  145 (277)
T ss_pred             EEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC----------------C
Confidence            88987653221    123334457899999999999986543  1122344444432121110                0


Q ss_pred             CCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeec
Q 042242          170 RVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~  206 (303)
                        +..+   |+.+|...+     ..     .+ ++++++||+.+.++
T Consensus       146 --~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~i~Pg~v~t~  186 (277)
T PRK06180        146 --GIGY---YCGSKFALEGISESLAKEVAPFG-IHVTAVEPGSFRTD  186 (277)
T ss_pred             --Ccch---hHHHHHHHHHHHHHHHHHhhhhC-cEEEEEecCCcccC
Confidence              1223   666665433     11     13 99999999999874

>PRK09186 flagellin modification protein A; Provisional

Probab=99.69  E-value=4e-15  Score=125.54  Aligned_cols=217  Identities=12%  Similarity=0.097  Sum_probs=129.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      ++|+|+||||+|+||+++++.|+ +.|++|++++|++++..         .....+.++.+|+.|++++.++++.     
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~-~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAIL-EAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999999 68999999999865431         0123456779999999998887765     


Q ss_pred             --cCceeEEeecc-------cccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCccccc
Q 042242           93 --LEDVTHIFWVT-------WASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 --~~~V~~~~~~~-------~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                        +|.|+|+++..       +...+.......+++|+.++..+++++...  .....+++.+|+...+..+        .
T Consensus        82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------~  153 (256)
T PRK09186         82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAP--------K  153 (256)
T ss_pred             CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccc--------c
Confidence              46688886432       112233444457888998887777766543  1122345555442222111        0


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                      ....+..+..+...   |+.+|...+        ..... +++++++|+.++++.   .    ..+.  .....  ..+ 
T Consensus       154 ~~~~~~~~~~~~~~---Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~---~----~~~~--~~~~~--~~~-  218 (256)
T PRK09186        154 FEIYEGTSMTSPVE---YAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ---P----EAFL--NAYKK--CCN-  218 (256)
T ss_pred             chhccccccCCcch---hHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCC---C----HHHH--HHHHh--cCC-
Confidence            01112222111122   676665443        11122 999999999887632   1    1110  00110  111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                         .         ..+.+++|+|+++++++...... ..|+.+.+.++
T Consensus       219 ---~---------~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~~g  253 (256)
T PRK09186        219 ---G---------KGMLDPDDICGTLVFLLSDQSKY-ITGQNIIVDDG  253 (256)
T ss_pred             ---c---------cCCCCHHHhhhhHhheecccccc-ccCceEEecCC
Confidence               1         12568899999999988655321 33577777665

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.68  E-value=3.8e-15  Score=125.55  Aligned_cols=213  Identities=15%  Similarity=0.110  Sum_probs=129.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      ++++|+||||+|+||++++++|+ +.|++|+++ .|+..+..     .  ....++++.+|++|.+++.++++.      
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~-~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   83 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLA-NDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ   83 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence            45899999999999999999999 689998775 45543221     1  123577899999999998887763      


Q ss_pred             -------cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           93 -------LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 -------~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                             +|.|+|+++.....    .........++.|+.++.++++.+.+......+++.+++...+...         
T Consensus        84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~---------  154 (254)
T PRK12746         84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF---------  154 (254)
T ss_pred             cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC---------
Confidence                   56688887653221    1223334577899999999999988652222345554443232110         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                               .+..+   |+.+|...+     ..   ... +++++++|+.++++........ ..+   .....  .   
T Consensus       155 ---------~~~~~---Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~-~~~---~~~~~--~---  213 (254)
T PRK12746        155 ---------TGSIA---YGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD-PEI---RNFAT--N---  213 (254)
T ss_pred             ---------CCCcc---hHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC-hhH---HHHHH--h---
Confidence                     00222   665554433     11   112 9999999999987421111000 000   00000  0   


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                         .      ..+..+.+++|+|.++.+++..+... ..|+.|++.++
T Consensus       214 ---~------~~~~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~i~~~  251 (254)
T PRK12746        214 ---S------SVFGRIGQVEDIADAVAFLASSDSRW-VTGQIIDVSGG  251 (254)
T ss_pred             ---c------CCcCCCCCHHHHHHHHHHHcCcccCC-cCCCEEEeCCC
Confidence               0      11223568899999988877654321 34589999876

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.68  E-value=3e-15  Score=126.29  Aligned_cols=217  Identities=12%  Similarity=0.085  Sum_probs=135.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc--CCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ--SSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~--~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      ..+|+||||||+|+||++++++|+ +.|++|++++|++.+..     ..  ..++..+++|+.|.++++++++.      
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            356899999999999999999999 68999999999865422     11  12477889999999988887765      


Q ss_pred             -cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       .|.++|.++.....    .......+.++.|+.++.++++++.+..  ....+++.+++...+            .+. 
T Consensus        87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~------------~~~-  153 (255)
T PRK07523         87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA------------LAR-  153 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc------------cCC-
Confidence             45688887653221    1233344578899999999999887651  123345554432111            000 


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H-----hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K-----LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~-----~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +  +..+   |+.+|...+     +     ..+ +++.++||+.+.++........ ..+  ...+..  ..|    
T Consensus       154 ---~--~~~~---y~~sK~a~~~~~~~~a~e~~~~g-i~v~~i~pg~~~t~~~~~~~~~-~~~--~~~~~~--~~~----  215 (255)
T PRK07523        154 ---P--GIAP---YTATKGAVGNLTKGMATDWAKHG-LQCNAIAPGYFDTPLNAALVAD-PEF--SAWLEK--RTP----  215 (255)
T ss_pred             ---C--CCcc---HHHHHHHHHHHHHHHHHHhhHhC-eEEEEEEECcccCchhhhhccC-HHH--HHHHHh--cCC----
Confidence               0  0223   666555433     1     123 9999999999988532111000 010  000111  112    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                               ...+.+++|+|.++++++..+... ..|+.+++.++...|
T Consensus       216 ---------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~i~~~gg~~~~  254 (255)
T PRK07523        216 ---------AGRWGKVEELVGACVFLASDASSF-VNGHVLYVDGGITAS  254 (255)
T ss_pred             ---------CCCCcCHHHHHHHHHHHcCchhcC-ccCcEEEECCCeecc
Confidence                     112557899999998887654322 346889998876554

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.68  E-value=7.7e-15  Score=124.03  Aligned_cols=212  Identities=15%  Similarity=0.116  Sum_probs=133.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      .++|++|||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.+++.++++.     
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   85 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLA-AHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL   85 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999998 68999988877543211        1124577899999999988887764     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccC--CccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAK--ALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        +|.|+|+++....    ........+.+++|+.++..+++++.....  .-..++.+++...+               
T Consensus        86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~---------------  150 (258)
T PRK09134         86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVW---------------  150 (258)
T ss_pred             CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhc---------------
Confidence              4668888764221    223344456899999999999998876521  11233332221111               


Q ss_pred             CcCCCCCC-CCccchHHHHHHHHH-----Hh----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVS-KSNNFYYVLEDLLKE-----KL----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p-~~~~~~y~~~k~~~e-----~~----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                      .    ..| ..+   |+.+|...+     +.    .. ++++.++|+.+........       ..+.....  ..+   
T Consensus       151 ~----~~p~~~~---Y~~sK~a~~~~~~~la~~~~~~-i~v~~i~PG~v~t~~~~~~-------~~~~~~~~--~~~---  210 (258)
T PRK09134        151 N----LNPDFLS---YTLSKAALWTATRTLAQALAPR-IRVNAIGPGPTLPSGRQSP-------EDFARQHA--ATP---  210 (258)
T ss_pred             C----CCCCchH---HHHHHHHHHHHHHHHHHHhcCC-cEEEEeecccccCCcccCh-------HHHHHHHh--cCC---
Confidence            0    001 123   777775443     11    23 8999999998876321100       11111111  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHH
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWK  286 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~  286 (303)
                      .+          ...+++|+|.+++.++..+...   |+.|++.++..++|.
T Consensus       211 ~~----------~~~~~~d~a~~~~~~~~~~~~~---g~~~~i~gg~~~~~~  249 (258)
T PRK09134        211 LG----------RGSTPEEIAAAVRYLLDAPSVT---GQMIAVDGGQHLAWL  249 (258)
T ss_pred             CC----------CCcCHHHHHHHHHHHhcCCCcC---CCEEEECCCeecccc
Confidence            11          1457899999999998866543   488999888766654

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.67  E-value=9.6e-15  Score=122.76  Aligned_cols=216  Identities=13%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +++++|||||+|+||++++++|+ +.|++|++++|+.....     .  ...++.++.+|+.|.+++++.++.       
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFA-EEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999 68999999999765432     0  124588899999999988887763       


Q ss_pred             cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      .|.++|+++...    ...+.....+.+++|+.++.++++++...  ..+..+++++++...|.+..             
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~-------------  147 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS-------------  147 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC-------------
Confidence            566888875422    12223333457899999999998887643  11223455555433331110             


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccch-hhHHHHHHHHhhhCCCceeeC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNF-LGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           ...+   |+.+|...+         .. .+ ++++++||+.++++........ .........+..  ..+.   
T Consensus       148 -----~~~~---Y~~sK~a~~~~~~~la~~~~~~~-i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---  213 (250)
T TIGR03206       148 -----GEAV---YAACKGGLVAFSKTMAREHARHG-ITVNVVCPGPTDTALLDDICGGAENPEKLREAFTR--AIPL---  213 (250)
T ss_pred             -----CCch---HHHHHHHHHHHHHHHHHHHhHhC-cEEEEEecCcccchhHHhhhhccCChHHHHHHHHh--cCCc---
Confidence                 0122   666553322         11 23 9999999999988522111000 000000000110  1110   


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      +          .+...+|+|++++.++..+... ..|+.+++.++.
T Consensus       214 ~----------~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~~g~  248 (250)
T TIGR03206       214 G----------RLGQPDDLPGAILFFSSDDASF-ITGQVLSVSGGL  248 (250)
T ss_pred             c----------CCcCHHHHHHHHHHHcCcccCC-CcCcEEEeCCCc
Confidence            1          1345678999998887654322 346889887764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.67  E-value=1.4e-14  Score=122.54  Aligned_cols=218  Identities=11%  Similarity=0.048  Sum_probs=127.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++....    .  ...++.++.+|+.|.+++.++++.       
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAA-AEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGR   84 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            456899999999999999999999 68999999999753211    1  123577889999999887776653       


Q ss_pred             cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.++|.++...     ......+..+.+++|+.++..+++.+....  ....+++.+++...|+.              
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--------------  150 (260)
T PRK12823         85 IDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI--------------  150 (260)
T ss_pred             CeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC--------------
Confidence            456888775321     122333444578899988877666655431  11224444444222210              


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccch---hh-HHHHHHHHhhh--CCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNF---LG-CLCVYGAVCKH--LNL  230 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~---~~-~~~~~~~~~~~--~~~  230 (303)
                            +..+   |+.+|...+     +   .... +++.+++|+.++++........   .. .......+.+.  ...
T Consensus       151 ------~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (260)
T PRK12823        151 ------NRVP---YSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSS  221 (260)
T ss_pred             ------CCCc---cHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccC
Confidence                  0223   666665443     1   1122 9999999999998521100000   00 00000000000  011


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      |+             .-+.+++|+|.++++++...... ..|+.|++.+++
T Consensus       222 ~~-------------~~~~~~~dva~~~~~l~s~~~~~-~~g~~~~v~gg~  258 (260)
T PRK12823        222 LM-------------KRYGTIDEQVAAILFLASDEASY-ITGTVLPVGGGD  258 (260)
T ss_pred             Cc-------------ccCCCHHHHHHHHHHHcCccccc-ccCcEEeecCCC
Confidence            21             12447889999998887554221 345889987764

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.67  E-value=2.9e-15  Score=132.32  Aligned_cols=255  Identities=16%  Similarity=0.131  Sum_probs=150.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcC-CC-eEEEEecCCcccc-------c---------------cCCCeEEEEecCCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTA-NW-KVYGIARKPEITA-------I---------------QSSSYCFISCDLLN   82 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~-g~-~V~~~~r~~~~~~-------~---------------~~~~~~~~~~D~~~   82 (303)
                      .+|+|+|||||||+|..+++.|++.. .. +|+++.|.+....       +               ...++..+.||+.+
T Consensus        11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~   90 (467)
T KOG1221|consen   11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISE   90 (467)
T ss_pred             CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccC
Confidence            57899999999999999999999332 33 5899988765431       0               12467888999987


Q ss_pred             HH------HHHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCC
Q 042242           83 PL------DIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLP  156 (303)
Q Consensus        83 ~~------~l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~  156 (303)
                      ++      +++...+++++|+|+|+..--...-.   -....|..|+.++++.|++. .++..++..|++........+ 
T Consensus        91 ~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~---~al~iNt~Gt~~~l~lak~~-~~l~~~vhVSTAy~n~~~~~i-  165 (467)
T KOG1221|consen   91 PDLGISESDLRTLADEVNIVIHSAATVRFDEPLD---VALGINTRGTRNVLQLAKEM-VKLKALVHVSTAYSNCNVGHI-  165 (467)
T ss_pred             cccCCChHHHHHHHhcCCEEEEeeeeeccchhhh---hhhhhhhHhHHHHHHHHHHh-hhhheEEEeehhheecccccc-
Confidence            63      45556778888999977643322222   26899999999999999986 334444444332111000000 


Q ss_pred             cccccCCcCcC-----------------------CC-CCCCCccchHHHHHHHHH-----HhcCCcceEEecCCceeecC
Q 042242          157 EEKQVRFYDEE-----------------------CP-RVSKSNNFYYVLEDLLKE-----KLAGKVAWSVHRPGLLLGSS  207 (303)
Q Consensus       157 g~~~~~~~~e~-----------------------~~-~~p~~~~~~y~~~k~~~e-----~~~~~~~~~ilRp~~v~G~~  207 (303)
                         .+.++.+.                       .+ .....|++ |...|.+.|     ...+ ++.+|+||+.|...-
T Consensus       166 ---~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNT-YtfTKal~E~~i~~~~~~-lPivIiRPsiI~st~  240 (467)
T KOG1221|consen  166 ---EEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNT-YTFTKALAEMVIQKEAEN-LPLVIIRPSIITSTY  240 (467)
T ss_pred             ---cccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCc-eeehHhhHHHHHHhhccC-CCeEEEcCCceeccc
Confidence               01111100                       01 11123444 344555555     3333 999999999999842


Q ss_pred             ----CCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcC--cCCcCCCCceEEeecCC
Q 042242          208 ----HRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN--DDISSTKGQAFNAINGP  281 (303)
Q Consensus       208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~--~~~~~~~g~~yni~~~~  281 (303)
                          +++..+............  .|.--.+..++    ....+++.+|.++.+++.++-.  .........+||++.++
T Consensus       241 ~EP~pGWidn~~gp~g~i~g~g--kGvlr~~~~d~----~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~  314 (467)
T KOG1221|consen  241 KEPFPGWIDNLNGPDGVIIGYG--KGVLRCFLVDP----KAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSN  314 (467)
T ss_pred             cCCCCCccccCCCCceEEEEec--cceEEEEEEcc----ccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccc
Confidence                221111111111000011  12222333333    5678899999999998866511  11110113599999755


Q ss_pred             --CccHHhhHHHHHHHhc
Q 042242          282 --RFTWKEIWPSIGKKFG  297 (303)
Q Consensus       282 --~~s~~e~~~~i~~~~g  297 (303)
                        +++|+++.+...+.+-
T Consensus       315 ~Np~t~~~~~e~~~~~~~  332 (467)
T KOG1221|consen  315 DNPVTWGDFIELALRYFE  332 (467)
T ss_pred             cCcccHHHHHHHHHHhcc
Confidence              7999999998777664

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.66  E-value=6.2e-15  Score=123.94  Aligned_cols=216  Identities=10%  Similarity=0.012  Sum_probs=131.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-----c-CCCeEEEEecCCCHHHHHHHHhcc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-----Q-SSSYCFISCDLLNPLDIKRKLTLL-------   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-----~-~~~~~~~~~D~~~~~~l~~~~~~~-------   93 (303)
                      .+++|+||||+|+||++++++|+ +.|++|++++|++.+...     . ..++.++.+|+.|.+++.++++.+       
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            45799999999999999999999 689999999998754321     1 134778999999999998887654       


Q ss_pred             CceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           94 EDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        94 ~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      |.|+|.++....     ..+.....+.++.|+.++..+++.+....  ....+++.+++...+...              
T Consensus        83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------  148 (251)
T PRK07231         83 DILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR--------------  148 (251)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC--------------
Confidence            668888764321     12334455688999999888888777541  223445555443222110              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hhc-CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KLA-GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~~-~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          .+..+   |+.+|...+         +.. + ++++.++|+.+.++........ ...........  .       
T Consensus       149 ----~~~~~---y~~sk~~~~~~~~~~a~~~~~~~-i~v~~i~pg~~~t~~~~~~~~~-~~~~~~~~~~~--~-------  210 (251)
T PRK07231        149 ----PGLGW---YNASKGAVITLTKALAAELGPDK-IRVNAVAPVVVETGLLEAFMGE-PTPENRAKFLA--T-------  210 (251)
T ss_pred             ----CCchH---HHHHHHHHHHHHHHHHHHhhhhC-eEEEEEEECccCCCcchhhhcc-cChHHHHHHhc--C-------
Confidence                00112   555443322         222 3 9999999999866321110000 00000000000  1       


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                            .....+.+++|+|.++++++..+... ..|..+.+.++..
T Consensus       211 ------~~~~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~gg~~  249 (251)
T PRK07231        211 ------IPLGRLGTPEDIANAALFLASDEASW-ITGVTLVVDGGRC  249 (251)
T ss_pred             ------CCCCCCcCHHHHHHHHHHHhCccccC-CCCCeEEECCCcc
Confidence                  11122568899999999988655432 3457777776643

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.65  E-value=8.7e-15  Score=123.15  Aligned_cols=213  Identities=15%  Similarity=0.055  Sum_probs=130.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---c-----cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---I-----QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~-----~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +++|+||||+|+||++++++|+ +.|++|+++.|+.....   .     ...++.++.+|+++.+++.+.++.       
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLA-KEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999 68999888776532211   0     113466788999999988777653       


Q ss_pred             cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           93 LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        93 ~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .|.|+|+++.....    .......+.+++|+.+...+++++.+....-..++..++...|.                  
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------------  146 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR------------------  146 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC------------------
Confidence            46689987653221    12222345789999999999998886522223444444432221                  


Q ss_pred             CCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +..+..+   |+.+|...+         +..+ +.+.+++|+.+.++............ . ....+    .        
T Consensus       147 ~~~~~~~---Y~~sK~~~~~~~~~l~~~~~~~-i~v~~v~Pg~i~t~~~~~~~~~~~~~-~-~~~~~----~--------  208 (252)
T PRK06077        147 PAYGLSI---YGAMKAAVINLTKYLALELAPK-IRVNAIAPGFVKTKLGESLFKVLGMS-E-KEFAE----K--------  208 (252)
T ss_pred             CCCCchH---HHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeCCccChHHHhhhhccccc-H-HHHHH----h--------
Confidence            0111233   777665443         1123 88899999998774211100000000 0 00000    0        


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       . .....+++++|+|++++.++..+...   |+.|++.+++.
T Consensus       209 -~-~~~~~~~~~~dva~~~~~~~~~~~~~---g~~~~i~~g~~  246 (252)
T PRK06077        209 -F-TLMGKILDPEEVAEFVAAILKIESIT---GQVFVLDSGES  246 (252)
T ss_pred             -c-CcCCCCCCHHHHHHHHHHHhCccccC---CCeEEecCCee
Confidence             0 11123689999999999988765443   48999998864

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.65  E-value=3.1e-14  Score=121.27  Aligned_cols=220  Identities=18%  Similarity=0.154  Sum_probs=144.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQF  108 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~~  108 (303)
                      ++|+||||||++|++++++|+ ..|++|+++.|++........++++..+|+.++.++...+++.+.++++..... ...
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~-~~~~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~~-~~~   78 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELL-ARGHEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLLD-GSD   78 (275)
T ss_pred             CeEEEEecccchHHHHHHHHH-hCCCEEEEEEeCHHHHHhhcCCcEEEEeccCCHhHHHHHhccccEEEEEecccc-ccc
Confidence            479999999999999999999 679999999999887653237899999999999999999999987666644332 111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHHH
Q 042242          109 ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEK  188 (303)
Q Consensus       109 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e~  188 (303)
                       .    ..........+..+.+.   ....++...+.   .+.             ....    ..+   |...+...|.
T Consensus        79 -~----~~~~~~~~~~~~a~~a~---~~~~~~~~~s~---~~~-------------~~~~----~~~---~~~~~~~~e~  127 (275)
T COG0702          79 -A----FRAVQVTAVVRAAEAAG---AGVKHGVSLSV---LGA-------------DAAS----PSA---LARAKAAVEA  127 (275)
T ss_pred             -c----hhHHHHHHHHHHHHHhc---CCceEEEEecc---CCC-------------CCCC----ccH---HHHHHHHHHH
Confidence             1    12222333333333333   23444444331   100             0000    222   6666666663


Q ss_pred             h---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          189 L---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       189 ~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      .   .+ ++++++|+..+|..... .      . ......  .+.+....+      ......++.+|++..+...+..+
T Consensus       128 ~l~~sg-~~~t~lr~~~~~~~~~~-~------~-~~~~~~--~~~~~~~~~------~~~~~~i~~~d~a~~~~~~l~~~  190 (275)
T COG0702         128 ALRSSG-IPYTTLRRAAFYLGAGA-A------F-IEAAEA--AGLPVIPRG------IGRLSPIAVDDVAEALAAALDAP  190 (275)
T ss_pred             HHHhcC-CCeEEEecCeeeeccch-h------H-HHHHHh--hCCceecCC------CCceeeeEHHHHHHHHHHHhcCC
Confidence            2   24 99999998777762111 1      0 111111  133333332      12345788899999998888877


Q ss_pred             CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          266 DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       266 ~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ...   +++|.+++++..+..++.+.+....|++..
T Consensus       191 ~~~---~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~  223 (275)
T COG0702         191 ATA---GRTYELAGPEALTLAELASGLDYTIGRPVG  223 (275)
T ss_pred             ccc---CcEEEccCCceecHHHHHHHHHHHhCCcce
Confidence            644   489999999999999999999999998864

>PRK05717 oxidoreductase; Validated

Probab=99.65  E-value=1.1e-14  Score=122.87  Aligned_cols=216  Identities=13%  Similarity=0.049  Sum_probs=131.7

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .+.++|+|+||||+|+||++++++|+ +.|++|++++|+..+..    .....+.++++|+.+.+++.++++.       
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLI-AEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHH-HcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            34467899999999999999999999 68999999988764322    1124577899999999887665543       


Q ss_pred             cCceeEEeeccccc------CChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTWAS------QFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.++|+++.....      .+..+..+.+++|+.++.++++++.... ..-.+++.+++...+.+.          +  
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~----------~--  152 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE----------P--  152 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC----------C--
Confidence            46688987653221      1334445689999999999999997531 111244444432221000          0  


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                            ...+   |+.+|...+         +..+ +++.+++|+.+.++.+...  ....+.   .... ...+     
T Consensus       153 ------~~~~---Y~~sKaa~~~~~~~la~~~~~~-i~v~~i~Pg~i~t~~~~~~--~~~~~~---~~~~-~~~~-----  211 (255)
T PRK05717        153 ------DTEA---YAASKGGLLALTHALAISLGPE-IRVNAVSPGWIDARDPSQR--RAEPLS---EADH-AQHP-----  211 (255)
T ss_pred             ------CCcc---hHHHHHHHHHHHHHHHHHhcCC-CEEEEEecccCcCCccccc--cchHHH---HHHh-hcCC-----
Confidence                  0123   666665443         1123 8999999999988532211  001110   0000 0111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                              ...+.+++|+|.++++++...... ..|+.+.+.++..
T Consensus       212 --------~~~~~~~~~va~~~~~l~~~~~~~-~~g~~~~~~gg~~  248 (255)
T PRK05717        212 --------AGRVGTVEDVAAMVAWLLSRQAGF-VTGQEFVVDGGMT  248 (255)
T ss_pred             --------CCCCcCHHHHHHHHHHHcCchhcC-ccCcEEEECCCce
Confidence                    112557789999988877543221 2357787766543

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.65  E-value=6.8e-15  Score=124.27  Aligned_cols=217  Identities=15%  Similarity=0.109  Sum_probs=131.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      ++|+|+||||+|+||++++++|+ ..|++|++++|++....     .  ...++.++.+|++|.+++..+++.       
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAA-RAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999 68999999999865422     0  123578899999999988777754       


Q ss_pred             cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.|+|.++....     .....+..+.++.|+.++..+++++.... ..-.+++.+++...+.            +.  
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~------------~~--  148 (258)
T PRK07890         83 VDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH------------SQ--  148 (258)
T ss_pred             ccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc------------CC--
Confidence            4568888754221     22344555689999999999999987641 1112455554421210            00  


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchh------hHHHHHHHHhhhCCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFL------GCLCVYGAVCKHLNLP  231 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~~  231 (303)
                          .+...   |+.+|...+     +.   ... ++++++||+.++++.........      .....+..+.+  .  
T Consensus       149 ----~~~~~---Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--  217 (258)
T PRK07890        149 ----PKYGA---YKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAA--N--  217 (258)
T ss_pred             ----CCcch---hHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhh--c--
Confidence                00122   555554433     11   112 99999999999995321110000      00000000000  0  


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                 .....+.+++|+|.++++++..... ...|+.+.+.++.
T Consensus       218 -----------~~~~~~~~~~dva~a~~~l~~~~~~-~~~G~~i~~~gg~  255 (258)
T PRK07890        218 -----------SDLKRLPTDDEVASAVLFLASDLAR-AITGQTLDVNCGE  255 (258)
T ss_pred             -----------CCccccCCHHHHHHHHHHHcCHhhh-CccCcEEEeCCcc
Confidence                       1112356789999999888764321 1335667666654

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.65  E-value=2.5e-14  Score=119.85  Aligned_cols=215  Identities=11%  Similarity=0.060  Sum_probs=134.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhc---cCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~  100 (303)
                      +++++++||||+|+||+++++.|+ +.|++|++++|++++...  ...+..++.+|+.+.+++.+.++.   +|.|+|.+
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~a   85 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALA-QRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCA   85 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECC
Confidence            346899999999999999999999 689999999998654321  122467889999999988888875   56688887


Q ss_pred             eccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc-CC--ccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242          101 WVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA-KA--LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus       101 ~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~--~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      +.....    .......+.++.|+.++.++++++.+.. .+  ..+++++++...|...            .      +.
T Consensus        86 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~------~~  147 (245)
T PRK07060         86 GIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------------P------DH  147 (245)
T ss_pred             CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------------C------CC
Confidence            653221    2233444578899999999999887641 11  1345554443222110            0      01


Q ss_pred             CccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhh
Q 042242          174 SNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       174 ~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (303)
                      .+   |+.+|...+     +.   ... ++++.+||+.++++.......  ... ....+..  ..    +         
T Consensus       148 ~~---y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~--~~~-~~~~~~~--~~----~---------  206 (245)
T PRK07060        148 LA---YCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWS--DPQ-KSGPMLA--AI----P---------  206 (245)
T ss_pred             cH---hHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhcc--CHH-HHHHHHh--cC----C---------
Confidence            22   666555443     11   112 999999999999853221111  000 0000110  01    1         


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ...+++++|+|++++.++..+... ..|+.+++.++.
T Consensus       207 ~~~~~~~~d~a~~~~~l~~~~~~~-~~G~~~~~~~g~  242 (245)
T PRK07060        207 LGRFAEVDDVAAPILFLLSDAASM-VSGVSLPVDGGY  242 (245)
T ss_pred             CCCCCCHHHHHHHHHHHcCcccCC-ccCcEEeECCCc
Confidence            112678899999999988765432 346888887764

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.65  E-value=3.2e-14  Score=121.09  Aligned_cols=156  Identities=16%  Similarity=0.210  Sum_probs=107.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc-------CceeEEe
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL-------EDVTHIF  100 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-------~~V~~~~  100 (303)
                      +++|+||||+|+||++++++|+ +.|++|++++|++.+.. ...+++++++|+.|.++++++++.+       |.++|++
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~-~~g~~V~~~~r~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~a   81 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLA-RAGYRVFGTSRNPARAA-PIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNA   81 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEeCChhhcc-ccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            4789999999999999999999 68999999999865532 2357889999999999998888753       6688887


Q ss_pred             ecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC
Q 042242          101 WVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS  174 (303)
Q Consensus       101 ~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~  174 (303)
                      +....    .....+..+.+++|+.++..+++++...  .....+++.+++...+...          |      .  ..
T Consensus        82 g~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~----------~------~--~~  143 (270)
T PRK06179         82 GVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPA----------P------Y--MA  143 (270)
T ss_pred             CCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCC----------C------C--cc
Confidence            65322    1233445568999999999998886543  1223455555542222110          0      0  12


Q ss_pred             ccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecC
Q 042242          175 NNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSS  207 (303)
Q Consensus       175 ~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~  207 (303)
                      .   |+.+|...+         .. .+ +++++++|+.+.++.
T Consensus       144 ~---Y~~sK~a~~~~~~~l~~el~~~g-i~v~~v~pg~~~t~~  182 (270)
T PRK06179        144 L---YAASKHAVEGYSESLDHEVRQFG-IRVSLVEPAYTKTNF  182 (270)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHhhhC-cEEEEEeCCCccccc
Confidence            2   665554433         11 23 999999999998753

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.65  E-value=2.7e-14  Score=118.79  Aligned_cols=209  Identities=15%  Similarity=0.144  Sum_probs=128.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh------ccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT------LLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~------~~~~V~~~~  100 (303)
                      .+|+|+||||+|+||++++++|+ +.|++|++++|+..+.    ...+++.+|+.|.+++.+.++      ++|.|+|++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~-~~G~~v~~~~r~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~a   76 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLA-NLGHQVIGIARSAIDD----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNNV   76 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCcccc----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECC
Confidence            35799999999999999999999 6899999999987652    123578899999998877776      356688887


Q ss_pred             ecccccC----ChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC
Q 042242          101 WVTWASQ----FASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS  174 (303)
Q Consensus       101 ~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~  174 (303)
                      +......    +..+..+.++.|+.++.++..++....  ....+++.+++...|+.+                   ...
T Consensus        77 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------------~~~  137 (234)
T PRK07577         77 GIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL-------------------DRT  137 (234)
T ss_pred             CCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC-------------------Cch
Confidence            6532221    234444578899999888877765431  123345555443233111                   012


Q ss_pred             ccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhh
Q 042242          175 NNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       175 ~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (303)
                      +   |+.+|...+         .. .+ ++++++||+.+..+......+.....  ......  ..+             
T Consensus       138 ~---Y~~sK~a~~~~~~~~a~e~~~~g-i~v~~i~pg~~~t~~~~~~~~~~~~~--~~~~~~--~~~-------------  196 (234)
T PRK07577        138 S---YSAAKSALVGCTRTWALELAEYG-ITVNAVAPGPIETELFRQTRPVGSEE--EKRVLA--SIP-------------  196 (234)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHhhC-cEEEEEecCcccCcccccccccchhH--HHHHhh--cCC-------------
Confidence            3   666554433         11 23 99999999999874321111100000  000000  111             


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      +....+.+|+|.++++++..+... ..|+.+++.++.
T Consensus       197 ~~~~~~~~~~a~~~~~l~~~~~~~-~~g~~~~~~g~~  232 (234)
T PRK07577        197 MRRLGTPEEVAAAIAFLLSDDAGF-ITGQVLGVDGGG  232 (234)
T ss_pred             CCCCcCHHHHHHHHHHHhCcccCC-ccceEEEecCCc
Confidence            111447789999999988654321 345888887664

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.64  E-value=2.2e-14  Score=122.39  Aligned_cols=210  Identities=17%  Similarity=0.090  Sum_probs=129.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      .|+++||||+|+||++++++|+ +.|++|++++|+.....     .  ...++.++.+|+.|.+++.++++.       +
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELA-AAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4799999999999999999999 68999999998764321     0  123577889999999998887764       4


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.++|+++....    ........+.++.|+.++.++++.+...  .....+++++++...|...               
T Consensus        89 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~---------------  153 (274)
T PRK07775         89 EVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR---------------  153 (274)
T ss_pred             CEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC---------------
Confidence            568888765322    1122334456899999999999887643  1222345555543333110               


Q ss_pred             CCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHH-HHHhhhCCCceeeCCc
Q 042242          168 CPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVY-GAVCKHLNLPFVFGGT  237 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~  237 (303)
                       +  +..+   |+.+|...+     +.   ... ++++++||+.+.+.........  ....+ .....       ..+ 
T Consensus       154 -~--~~~~---Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~--~~~~~~~~~~~-------~~~-  217 (274)
T PRK07775        154 -P--HMGA---YGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAE--VIGPMLEDWAK-------WGQ-  217 (274)
T ss_pred             -C--Ccch---HHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChh--hhhHHHHHHHH-------hcc-
Confidence             0  0223   676665554     21   112 9999999988865311111000  00000 00000       011 


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEee
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAI  278 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~  278 (303)
                           .....+.+++|+|++++.++..+.    ++.+||+.
T Consensus       218 -----~~~~~~~~~~dva~a~~~~~~~~~----~~~~~~~~  249 (274)
T PRK07775        218 -----ARHDYFLRASDLARAITFVAETPR----GAHVVNME  249 (274)
T ss_pred             -----cccccccCHHHHHHHHHHHhcCCC----CCCeeEEe
Confidence                 112236889999999999887652    23688886

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.64  E-value=2.9e-14  Score=119.87  Aligned_cols=214  Identities=12%  Similarity=0.038  Sum_probs=130.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+++++||||+|+||++++++|+ +.|++|+++ .|+..+..       ....++.++.+|++|++++..+++.      
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~-~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLA-EEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35799999999999999999999 689997764 66543321       1123577889999999998887764      


Q ss_pred             -cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       +|.|+|.++.....    .........+++|+.++..+++++.+..  .+..+++++|+...+.               
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---------------  146 (250)
T PRK08063         82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR---------------  146 (250)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc---------------
Confidence             46688887643221    1233333468899999999999887651  2233555554421110               


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +..+...   |+.+|...+     ..     .+ +++++++|+.+..+.......   ..........  ..+    
T Consensus       147 ---~~~~~~~---y~~sK~a~~~~~~~~~~~~~~~~-i~v~~i~pg~v~t~~~~~~~~---~~~~~~~~~~--~~~----  210 (250)
T PRK08063        147 ---YLENYTT---VGVSKAALEALTRYLAVELAPKG-IAVNAVSGGAVDTDALKHFPN---REELLEDARA--KTP----  210 (250)
T ss_pred             ---CCCCccH---HHHHHHHHHHHHHHHHHHHhHhC-eEEEeEecCcccCchhhhccC---chHHHHHHhc--CCC----
Confidence               0000122   666555444     11     23 899999999998743221100   0000000100  001    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                               +..+++++|+|+++++++..+... ..|+.|++.++..
T Consensus       211 ---------~~~~~~~~dva~~~~~~~~~~~~~-~~g~~~~~~gg~~  247 (250)
T PRK08063        211 ---------AGRMVEPEDVANAVLFLCSPEADM-IRGQTIIVDGGRS  247 (250)
T ss_pred             ---------CCCCcCHHHHHHHHHHHcCchhcC-ccCCEEEECCCee
Confidence                     112578899999999888665322 3458888887754

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.64  E-value=4e-14  Score=118.82  Aligned_cols=210  Identities=14%  Similarity=0.102  Sum_probs=130.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+++++||||+|+||++++++|+ ..|++|+++.++.....      .  ...++.++.+|+.|.+++.++++.      
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALA-QEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG   83 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999 68999887765432211      1  123578899999999998887776      


Q ss_pred             -cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       +|.|+|+++.....    .......+.+++|+.++..+++++....  ....+++.+++...+.+.             
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------  150 (247)
T PRK12935         84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG-------------  150 (247)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC-------------
Confidence             46688887653221    2234556688999999999999987541  112244444432111000             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+..+   |+.+|...+         +. .+ +++++++|+.+.++..... .  ...  ......  .      
T Consensus       151 -----~~~~~---Y~~sK~a~~~~~~~l~~~~~~~~-i~v~~v~pg~v~t~~~~~~-~--~~~--~~~~~~--~------  208 (247)
T PRK12935        151 -----FGQTN---YSAAKAGMLGFTKSLALELAKTN-VTVNAICPGFIDTEMVAEV-P--EEV--RQKIVA--K------  208 (247)
T ss_pred             -----CCCcc---hHHHHHHHHHHHHHHHHHHHHcC-cEEEEEEeCCCcChhhhhc-c--HHH--HHHHHH--h------
Confidence                 01223   666655332         11 13 9999999999876321110 0  010  000101  1      


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                             .....+.+++|+++++++++.....  ..|+.||+.++.
T Consensus       209 -------~~~~~~~~~edva~~~~~~~~~~~~--~~g~~~~i~~g~  245 (247)
T PRK12935        209 -------IPKKRFGQADEIAKGVVYLCRDGAY--ITGQQLNINGGL  245 (247)
T ss_pred             -------CCCCCCcCHHHHHHHHHHHcCcccC--ccCCEEEeCCCc
Confidence                   1112357889999999998865432  346899998874

>PRK06182 short chain dehydrogenase; Validated

Probab=99.64  E-value=2.3e-14  Score=122.15  Aligned_cols=158  Identities=20%  Similarity=0.189  Sum_probs=103.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHh-------ccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~   98 (303)
                      .+++|+||||+|+||++++++|+ ..|++|++++|++.+.. ....+++++.+|++|.+++.++++       ++|.++|
T Consensus         2 ~~k~vlItGasggiG~~la~~l~-~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLA-AQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            35799999999999999999999 68999999999876532 223468899999999999888776       4566888


Q ss_pred             Eeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           99 IFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        99 ~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      .++....    .....+....+++|+.++..+++.+.+.  .....+++.+++...+.          ..+      .  
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------~~~------~--  142 (273)
T PRK06182         81 NAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------YTP------L--  142 (273)
T ss_pred             CCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC----------CCC------C--
Confidence            8765332    1233445568899998866555554332  11123444444321110          000      0  


Q ss_pred             CCccchHHHHHHHHHH--------hcCC-cceEEecCCceeec
Q 042242          173 KSNNFYYVLEDLLKEK--------LAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e~--------~~~~-~~~~ilRp~~v~G~  206 (303)
                      ...   |+.+|...+.        .... ++++++||+.+.++
T Consensus       143 ~~~---Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~  182 (273)
T PRK06182        143 GAW---YHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTE  182 (273)
T ss_pred             ccH---hHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccc
Confidence            112   6665554441        1222 99999999999874

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.64  E-value=8.3e-14  Score=117.83  Aligned_cols=221  Identities=18%  Similarity=0.125  Sum_probs=131.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~   98 (303)
                      .++|+|+||||+|+||++++++|. +.|++|++++|+....  ...++.++++|+.|.+++++.++       .+|.|+|
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~r~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   83 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLL-EAGARVVTTARSRPDD--LPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH   83 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHH-HCCCEEEEEeCChhhh--cCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            456899999999999999999999 6899999999986542  23467889999999988776554       3466888


Q ss_pred             Eeeccc------ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           99 IFWVTW------ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        99 ~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .++...      ...+.....+.+++|+.++..+++++....  ....+++.+++...+.            +..+    
T Consensus        84 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~----  147 (260)
T PRK06523         84 VLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRL------------PLPE----  147 (260)
T ss_pred             CCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccC------------CCCC----
Confidence            876321      112334455688999999988877765431  1112344444321210            0000    


Q ss_pred             CCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhh-----HHHHHH-HHhhh-CCCcee
Q 042242          171 VSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLG-----CLCVYG-AVCKH-LNLPFV  233 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~-----~~~~~~-~~~~~-~~~~~~  233 (303)
                       +..+   |+.+|...+         +. .+ +++.+++|+.+.++..........     ...... .+.+. .+.|  
T Consensus       148 -~~~~---Y~~sK~a~~~l~~~~a~~~~~~g-i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--  220 (260)
T PRK06523        148 -STTA---YAAAKAALSTYSKSLSKEVAPKG-VRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIP--  220 (260)
T ss_pred             -Ccch---hHHHHHHHHHHHHHHHHHHhhcC-cEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCc--
Confidence             0223   666555433         11 23 999999999998743211000000     000000 00000 0111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                                 +..+.+++|+|.++++++..+... ..|+.+.+.++...|
T Consensus       221 -----------~~~~~~~~~va~~~~~l~s~~~~~-~~G~~~~vdgg~~~~  259 (260)
T PRK06523        221 -----------LGRPAEPEEVAELIAFLASDRAAS-ITGTEYVIDGGTVPT  259 (260)
T ss_pred             -----------cCCCCCHHHHHHHHHHHhCccccc-ccCceEEecCCccCC
Confidence                       112457789999999888654322 445889888876554

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.64  E-value=4.6e-14  Score=118.75  Aligned_cols=216  Identities=12%  Similarity=0.067  Sum_probs=129.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|+......      ...++.++++|+.|.+++.++++.       +
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFA-REGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHH-HCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999 689999999998654321      123478899999999998887763       4


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.|+|+++....    ..+.....+.+++|+.++.++.+.+...  .....+++.+++...+.+.               
T Consensus        83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~---------------  147 (252)
T PRK06138         83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG---------------  147 (252)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC---------------
Confidence            668888765321    2233444457899999998877776543  1122344444432111000               


Q ss_pred             CCCCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          168 CPRVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                         ....+   |+.+|...+     +    . .+ ++++++||+.++++....................  .      . 
T Consensus       148 ---~~~~~---Y~~sK~a~~~~~~~l~~~~~~~~-i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~--~------~-  211 (252)
T PRK06138        148 ---RGRAA---YVASKGAIASLTRAMALDHATDG-IRVNAVAPGTIDTPYFRRIFARHADPEALREALR--A------R-  211 (252)
T ss_pred             ---CCccH---HHHHHHHHHHHHHHHHHHHHhcC-eEEEEEEECCccCcchhhhhccccChHHHHHHHH--h------c-
Confidence               00223   666554433     1    1 23 9999999999988532111000000000000000  0      0 


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                           ..+..+.+.+|+|+++++++..+... ..|..+.+.++
T Consensus       212 -----~~~~~~~~~~d~a~~~~~l~~~~~~~-~~g~~~~~~~g  248 (252)
T PRK06138        212 -----HPMNRFGTAEEVAQAALFLASDESSF-ATGTTLVVDGG  248 (252)
T ss_pred             -----CCCCCCcCHHHHHHHHHHHcCchhcC-ccCCEEEECCC
Confidence                 11122567899999999988775432 33567777655

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.64  E-value=6.7e-14  Score=117.78  Aligned_cols=220  Identities=13%  Similarity=0.040  Sum_probs=131.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-------cCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-------LEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~~   98 (303)
                      +.+|++|||||+|+||+.++++|+ +.|++|++++|+..  .....++.++++|+.+.+++.+.++.       .|.|+|
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~-~~G~~v~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFV-EAGAKVIGFDQAFL--TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVN   82 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEecchh--hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            346899999999999999999999 68999999999862  11234688899999999998887765       466888


Q ss_pred             Eeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           99 IFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        99 ~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      +++....    ..+..+..+.+++|+.++..+++++....  ....+++.+++....            .+.      .+
T Consensus        83 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~------------~~~------~~  144 (252)
T PRK08220         83 AAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH------------VPR------IG  144 (252)
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhc------------cCC------CC
Confidence            8654321    12344555689999999999999876531  122344444432111            000      01


Q ss_pred             CCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          173 KSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      ...   |+.+|...+     ..     .+ +++++++|+.++++........ .... ...+.. .... ...+      
T Consensus       145 ~~~---Y~~sK~a~~~~~~~la~e~~~~~-i~v~~i~pg~v~t~~~~~~~~~-~~~~-~~~~~~-~~~~-~~~~------  210 (252)
T PRK08220        145 MAA---YGASKAALTSLAKCVGLELAPYG-VRCNVVSPGSTDTDMQRTLWVD-EDGE-QQVIAG-FPEQ-FKLG------  210 (252)
T ss_pred             Cch---hHHHHHHHHHHHHHHHHHhhHhC-eEEEEEecCcCcchhhhhhccc-hhhh-hhhhhh-HHHH-Hhhc------
Confidence            122   555554433     11     23 9999999999998532111000 0000 000000 0000 0000      


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ..+..+.+++|+|+++++++...... ..|+...+.++.
T Consensus       211 ~~~~~~~~~~dva~~~~~l~~~~~~~-~~g~~i~~~gg~  248 (252)
T PRK08220        211 IPLGKIARPQEIANAVLFLASDLASH-ITLQDIVVDGGA  248 (252)
T ss_pred             CCCcccCCHHHHHHHHHHHhcchhcC-ccCcEEEECCCe
Confidence            12234678899999999988654322 345666666653

>PLN02253 xanthoxin dehydrogenase

Probab=99.63  E-value=5.7e-14  Score=120.18  Aligned_cols=226  Identities=12%  Similarity=0.037  Sum_probs=134.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|+.....     . ...++.++++|++|.+++.++++       .
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~   94 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFH-KHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT   94 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999 68999999998754321     1 12367899999999999888776       4


Q ss_pred             cCceeEEeecccc------cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeeccc-ccccccCCCcccccCC
Q 042242           93 LEDVTHIFWVTWA------SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMK-HYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ~~~V~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~  163 (303)
                      +|.++|+++....      ..+..+..+.+++|+.++.++++++....  ..-.+++.+++.. .++.+           
T Consensus        95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-----------  163 (280)
T PLN02253         95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGL-----------  163 (280)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCC-----------
Confidence            5678888764321      12344556689999999999988876541  1112333333211 11000           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccc-hhhHHHHHHHHhhh--CCCc
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYN-FLGCLCVYGAVCKH--LNLP  231 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~--~~~~  231 (303)
                              ...+   |+.+|...+     +.   ... +++.+++|+.+..+....... ..........+...  ...+
T Consensus       164 --------~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (280)
T PLN02253        164 --------GPHA---YTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNAN  232 (280)
T ss_pred             --------CCcc---cHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCC
Confidence                    0112   666665543     11   112 999999999997742111000 00000000000000  0001


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHh
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                                  ......+++|+|.++++++..+... ..|+.+++.++...+..+
T Consensus       233 ------------l~~~~~~~~dva~~~~~l~s~~~~~-i~G~~i~vdgG~~~~~~~  275 (280)
T PLN02253        233 ------------LKGVELTVDDVANAVLFLASDEARY-ISGLNLMIDGGFTCTNHS  275 (280)
T ss_pred             ------------CcCCCCCHHHHHHHHHhhcCccccc-ccCcEEEECCchhhccch
Confidence                        0012467899999999887654321 345888898876544433

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.63  E-value=5.1e-14  Score=118.23  Aligned_cols=212  Identities=16%  Similarity=0.140  Sum_probs=126.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      |+++++||||+|+||++++++|+ +.|+.|+++.++.... .     .  ....+.++.+|++|.+++.++++.      
T Consensus         1 ~~~~~lVtG~~~~iG~~~a~~l~-~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          1 MRKVMIITGASRGIGAATALLAA-ERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999 6898988776543221 1     1  123577889999999988887763      


Q ss_pred             -cCceeEEeeccccc-----CChHHHHHHHHHHHHHHHHHHHHHhhc-cCC----ccEEEEeeccc-ccccccCCCcccc
Q 042242           93 -LEDVTHIFWVTWAS-----QFASDMHKCCEQNKAMMCNALNAILPR-AKA----LKHVSLQTGMK-HYVSLQGLPEEKQ  160 (303)
Q Consensus        93 -~~~V~~~~~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~----~~~~~~~s~~~-~y~~~~~~~g~~~  160 (303)
                       +|.|+|+++.....     ....+..+.++.|+.++.++++++... ..+    -.+++.+++.. .|+.+        
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------  151 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP--------  151 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC--------
Confidence             45688887653221     123344467999999999988887654 111    12344443321 22110        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                               .. ...   |+.+|...+     .   .... ++++++||+.++++......  ....  ......  ..|
T Consensus       152 ---------~~-~~~---Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~--~~~~--~~~~~~--~~p  212 (248)
T PRK06123        152 ---------GE-YID---YAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG--EPGR--VDRVKA--GIP  212 (248)
T ss_pred             ---------CC-ccc---hHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC--CHHH--HHHHHh--cCC
Confidence                     00 012   555554333     1   1122 99999999999985321110  0110  011110  112


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      +..             ..+++|+++++++++...... ..|+.|++.++
T Consensus       213 ~~~-------------~~~~~d~a~~~~~l~~~~~~~-~~g~~~~~~gg  247 (248)
T PRK06123        213 MGR-------------GGTAEEVARAILWLLSDEASY-TTGTFIDVSGG  247 (248)
T ss_pred             CCC-------------CcCHHHHHHHHHHHhCccccC-ccCCEEeecCC
Confidence            111             236789999999887654321 34588998765

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.63  E-value=7.2e-14  Score=117.13  Aligned_cols=211  Identities=15%  Similarity=0.146  Sum_probs=126.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+++|+||||||+||+++++.|+ +.|++|+++.|+.....        ....++.++.+|+.+.+++.++++.      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLA-AQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35799999999999999999999 68999988888765311        1234677889999999988877763      


Q ss_pred             -cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeeccc-ccccccCCCcccccCCc
Q 042242           93 -LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMK-HYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 -~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~~  164 (303)
                       +|.|+|+++.....    .......+.+..|+.++.++++++....  ....+++++++.. .|+..            
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~------------  150 (248)
T PRK05557         83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP------------  150 (248)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC------------
Confidence             45688887653321    2233444578899999999999987651  2223444444321 11110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                             ...+   |..+|...+        ..... +++++++|+.+.++.....   .....  .....  ..+    
T Consensus       151 -------~~~~---y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~---~~~~~--~~~~~--~~~----  209 (248)
T PRK05557        151 -------GQAN---YAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL---PEDVK--EAILA--QIP----  209 (248)
T ss_pred             -------CCch---hHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc---ChHHH--HHHHh--cCC----
Confidence                   0122   555443222        11122 8999999988765321111   01110  00000  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               ...+.+.+|+|.++.+++..... ...|+.|++.++.
T Consensus       210 ---------~~~~~~~~~va~~~~~l~~~~~~-~~~g~~~~i~~~~  245 (248)
T PRK05557        210 ---------LGRLGQPEEIASAVAFLASDEAA-YITGQTLHVNGGM  245 (248)
T ss_pred             ---------CCCCcCHHHHHHHHHHHcCcccC-CccccEEEecCCc
Confidence                     11245778899988877755221 1345899998763

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.63  E-value=4.6e-14  Score=118.45  Aligned_cols=211  Identities=15%  Similarity=0.089  Sum_probs=129.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHhc--
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLTL--   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~~--   92 (303)
                      +++++++||||+|+||+++++.|+ +.|++|++++|......           .....+.++.+|+.|.++++++++.  
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLA-ADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV   82 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-HCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            356899999999999999999999 68999999876432210           0123578899999999988887753  


Q ss_pred             -----cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHh-hc--cCCccEEEEeecccccccccCCCcccc
Q 042242           93 -----LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAIL-PR--AKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 -----~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~-~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                           +|.|+|.++...    ...+.....+.++.|+.++.++++++. ..  .....+++.+++...+.+.        
T Consensus        83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------  154 (249)
T PRK12827         83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN--------  154 (249)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC--------
Confidence                 466888876533    222334445678999999999999987 22  1122345554443222110        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                                .+..+   |..+|...+        ..... ++++++||+.+.++......  ...     .+.+  ..+
T Consensus       155 ----------~~~~~---y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~--~~~-----~~~~--~~~  212 (249)
T PRK12827        155 ----------RGQVN---YAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAA--PTE-----HLLN--PVP  212 (249)
T ss_pred             ----------CCCch---hHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccc--hHH-----HHHh--hCC
Confidence                      00122   666554322        11112 99999999999985322110  000     0000  111


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                   ...+.+.+|+|+++++++...... ..|+.+++.++.
T Consensus       213 -------------~~~~~~~~~va~~~~~l~~~~~~~-~~g~~~~~~~g~  248 (249)
T PRK12827        213 -------------VQRLGEPDEVAALVAFLVSDAASY-VTGQVIPVDGGF  248 (249)
T ss_pred             -------------CcCCcCHHHHHHHHHHHcCcccCC-ccCcEEEeCCCC
Confidence                         111346788899888877553222 346788887653

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.63  E-value=7.8e-14  Score=117.45  Aligned_cols=216  Identities=13%  Similarity=0.019  Sum_probs=133.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc-------CceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL-------EDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-------~~V~~   98 (303)
                      +++|+++||||+|+||++++++|+ ..|++|++++|++.. .....++.++++|+.+.+++.++++.+       |.|+|
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~-~~g~~v~~~~r~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   81 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFL-AAGATVVVCGRRAPE-TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVN   81 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCChhh-hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            356899999999999999999999 689999999998654 112346788999999999888877654       66888


Q ss_pred             Eeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc-c--CCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           99 IFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR-A--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        99 ~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      .++....    ........+.+++|+.++..+++++... .  ....+++.+++...+.            +..      
T Consensus        82 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~------  143 (252)
T PRK07856         82 NAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR------------PSP------  143 (252)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC------------CCC------
Confidence            8764321    2233344568899999999999988653 1  1122444444321210            000      


Q ss_pred             CCCccchHHHHHHHHH-----H----hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          172 SKSNNFYYVLEDLLKE-----K----LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e-----~----~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      ...+   |+.+|...+     +    ... +++..++|+.+..+.......  .. .....+..  ..|           
T Consensus       144 ~~~~---Y~~sK~a~~~l~~~la~e~~~~-i~v~~i~Pg~v~t~~~~~~~~--~~-~~~~~~~~--~~~-----------  203 (252)
T PRK07856        144 GTAA---YGAAKAGLLNLTRSLAVEWAPK-VRVNAVVVGLVRTEQSELHYG--DA-EGIAAVAA--TVP-----------  203 (252)
T ss_pred             CCch---hHHHHHHHHHHHHHHHHHhcCC-eEEEEEEeccccChHHhhhcc--CH-HHHHHHhh--cCC-----------
Confidence            0122   666555443     2    223 889999999887642111000  00 00000111  111           


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                        +..+.+++++|.++++++..+... ..|..+.+.++...+
T Consensus       204 --~~~~~~p~~va~~~~~L~~~~~~~-i~G~~i~vdgg~~~~  242 (252)
T PRK07856        204 --LGRLATPADIAWACLFLASDLASY-VSGANLEVHGGGERP  242 (252)
T ss_pred             --CCCCcCHHHHHHHHHHHcCcccCC-ccCCEEEECCCcchH
Confidence              112457789999998887654321 456888888776544

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.63  E-value=5.1e-14  Score=120.08  Aligned_cols=206  Identities=14%  Similarity=0.033  Sum_probs=125.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+++||||+|+||++++++|+ ..|++|++++|+.+...     .  ...++.++.+|++|.+++.++++.      
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La-~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFA-RRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999 68999999998865432     1  122467789999999998887765      


Q ss_pred             -cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 -LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 -~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       +|.++|.++...    ...+.....+.+++|+.++.++++++....   ..-.+++.+++...+...            
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~------------  150 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN------------  150 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC------------
Confidence             466888876532    222334445578999999999998876431   112345554443222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHH---------HHh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLK---------EKL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~---------e~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+..+   |+.+|...         ++. .+ +++++++|+.+.++.....    ....  ..... .......
T Consensus       151 ------~~~~~---Y~asK~a~~~~~~~l~~e~~~~g-i~v~~v~Pg~v~t~~~~~~----~~~~--~~~~~-~~~~~~~  213 (275)
T PRK05876        151 ------AGLGA---YGVAKYGVVGLAETLAREVTADG-IGVSVLCPMVVETNLVANS----ERIR--GAACA-QSSTTGS  213 (275)
T ss_pred             ------CCCch---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEEeCccccccccch----hhhc--Ccccc-ccccccc
Confidence                  01223   77666532         121 23 9999999999887422111    0000  00000 0001111


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      .+..    ....+..+++|+|++++.++..+
T Consensus       214 ~~~~----~~~~~~~~~~dva~~~~~ai~~~  240 (275)
T PRK05876        214 PGPL----PLQDDNLGVDDIAQLTADAILAN  240 (275)
T ss_pred             cccc----cccccCCCHHHHHHHHHHHHHcC
Confidence            1111    12234678999999999888654

>PRK07985 oxidoreductase; Provisional

Probab=99.62  E-value=1.4e-13  Score=118.48  Aligned_cols=214  Identities=11%  Similarity=0.045  Sum_probs=130.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      +.+|+++||||+|+||++++++|+ +.|++|+++.|+.....         ....++.++.+|++|.+++.++++.    
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~-~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYA-REGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999 68999998877543211         0123467889999999888776654    


Q ss_pred             ---cCceeEEeecc-----cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 ---LEDVTHIFWVT-----WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ---~~~V~~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                         +|.++|.++..     ....+..+..+.+++|+.++..+++++......-.+++.+|+...|...            
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~------------  193 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS------------  193 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC------------
Confidence               35577776532     1122345556689999999999999987642112345555443233111            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +.  ..+   |+.+|...+         .. .+ +++.+++|+.|.++..... .....  ......+  ..|   
T Consensus       194 ----~~--~~~---Y~asKaal~~l~~~la~el~~~g-Irvn~i~PG~v~t~~~~~~-~~~~~--~~~~~~~--~~~---  255 (294)
T PRK07985        194 ----PH--LLD---YAATKAAILNYSRGLAKQVAEKG-IRVNIVAPGPIWTALQISG-GQTQD--KIPQFGQ--QTP---  255 (294)
T ss_pred             ----CC--cch---hHHHHHHHHHHHHHHHHHHhHhC-cEEEEEECCcCcccccccc-CCCHH--HHHHHhc--cCC---
Confidence                00  123   666655433         11 24 9999999999998532111 00001  0000111  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                +..+...+|+|.++++++...... ..|+.+.+.++.
T Consensus       256 ----------~~r~~~pedva~~~~fL~s~~~~~-itG~~i~vdgG~  291 (294)
T PRK07985        256 ----------MKRAGQPAELAPVYVYLASQESSY-VTAEVHGVCGGE  291 (294)
T ss_pred             ----------CCCCCCHHHHHHHHHhhhChhcCC-ccccEEeeCCCe
Confidence                      112457789999999887654321 345788777764

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.61  E-value=4.3e-14  Score=117.02  Aligned_cols=202  Identities=15%  Similarity=0.083  Sum_probs=120.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhc---cCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~  100 (303)
                      |+|+++||||+|+||+++++.|+ +. ++|++++|++.+..   ...++++++.+|+.|.+++.++++.   +|.|+|++
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~-~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~a   79 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELA-PT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNA   79 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHH-hh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECC
Confidence            45799999999999999999999 56 89999999865532   1224688999999999999998875   56699987


Q ss_pred             eccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242          101 WVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus       101 ~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      +.....    .......+.++.|+.+...+...+.+. .....+++++++...+.+..                  +..+
T Consensus        80 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~------------------~~~~  141 (227)
T PRK08219         80 GVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRANP------------------GWGS  141 (227)
T ss_pred             CcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCcCC------------------CCch
Confidence            653321    122333346788888855544444322 11123444444432221110                  0122


Q ss_pred             cchHHHHHHHHH-----Hh--cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhccc
Q 042242          176 NFYYVLEDLLKE-----KL--AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLD  247 (303)
Q Consensus       176 ~~~y~~~k~~~e-----~~--~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  247 (303)
                         |+..|...+     +.  ... +++..++|+.+.++...       ..      ....+..  .+         ...
T Consensus       142 ---y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~-------~~------~~~~~~~--~~---------~~~  194 (227)
T PRK08219        142 ---YAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR-------GL------VAQEGGE--YD---------PER  194 (227)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh-------hh------hhhhccc--cC---------CCC
Confidence               554444332     21  122 78888888766542110       10      0000100  01         113


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeec
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAIN  279 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~  279 (303)
                      +++++|+|++++.++..+..    +.+|++.-
T Consensus       195 ~~~~~dva~~~~~~l~~~~~----~~~~~~~~  222 (227)
T PRK08219        195 YLRPETVAKAVRFAVDAPPD----AHITEVVV  222 (227)
T ss_pred             CCCHHHHHHHHHHHHcCCCC----CccceEEE
Confidence            67899999999999877532    36787764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.61  E-value=1.4e-13  Score=115.68  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cCCCeEEEEecCCCHHHHHHHHh-------ccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QSSSYCFISCDLLNPLDIKRKLT-------LLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~   97 (303)
                      ++|+||||+|+||.++++.|+ ..|++|++++|++.+...    ...++.++.+|+.|.+++.++++       ++|.|+
T Consensus         1 ~~vlItGasg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi   79 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFI-QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLV   79 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            479999999999999999999 689999999998764321    12367889999999998887775       456688


Q ss_pred             EEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           98 HIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      |.++...     ...+..+..+.+++|+.++..++..+....  ....+++.+|+...+            .+.      
T Consensus        80 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~------------~~~------  141 (248)
T PRK10538         80 NNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS------------WPY------  141 (248)
T ss_pred             ECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC------------CCC------
Confidence            8876432     122344445688999999877777765431  223345555442111            000      


Q ss_pred             CCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeec
Q 042242          171 VSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~  206 (303)
                      .+..+   |+.+|...+     .   .... +++.+++|+.+.|.
T Consensus       142 ~~~~~---Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~  183 (248)
T PRK10538        142 AGGNV---YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGT  183 (248)
T ss_pred             CCCch---hHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeeccc
Confidence            01222   666555443     1   1122 99999999999863

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.61  E-value=3e-13  Score=116.27  Aligned_cols=215  Identities=15%  Similarity=0.092  Sum_probs=132.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------cc--CCCeEEEEecCCCHHHHHHHHhc----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQ--SSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~--~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      .+++|++|||||+|+||++++++|+ +.|++|++++|+.....      ..  ..++.++.+|+.+.+.+.++++.    
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3346899999999999999999999 68999999998754311      11  23577889999999988777754    


Q ss_pred             ---cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 ---LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ---~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                         .|.|+|+++....     ..+.....+.++.|+.++.++++++...-..-.+++.+++...|....           
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~-----------  190 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNE-----------  190 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCC-----------
Confidence               4668888764321     223344456899999999999999876411112444444433331110           


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                           .  ...   |..+|...+         +. .+ ++++.++|+.++.+.....  .....  ......  .     
T Consensus       191 -----~--~~~---Y~~sK~a~~~l~~~la~~~~~~g-Irv~~i~pG~v~T~~~~~~--~~~~~--~~~~~~--~-----  248 (290)
T PRK06701        191 -----T--LID---YSATKGAIHAFTRSLAQSLVQKG-IRVNAVAPGPIWTPLIPSD--FDEEK--VSQFGS--N-----  248 (290)
T ss_pred             -----C--cch---hHHHHHHHHHHHHHHHHHhhhcC-eEEEEEecCCCCCcccccc--cCHHH--HHHHHh--c-----
Confidence                 0  112   555544332         11 23 9999999999987422111  00010  000000  1     


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                              .....+.+++|+|.++++++...... ..|..+++.++..
T Consensus       249 --------~~~~~~~~~~dva~~~~~ll~~~~~~-~~G~~i~idgg~~  287 (290)
T PRK06701        249 --------TPMQRPGQPEELAPAYVFLASPDSSY-ITGQMLHVNGGVI  287 (290)
T ss_pred             --------CCcCCCcCHHHHHHHHHHHcCcccCC-ccCcEEEeCCCcc
Confidence                    11122567789999999988765321 3458888887643

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.60  E-value=8.3e-14  Score=106.43  Aligned_cols=203  Identities=13%  Similarity=0.111  Sum_probs=129.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQF  108 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~~  108 (303)
                      +||.|+||||.+|++|++..+ .+||+|++++|++++... .+++.+++.|+.|++++.+.+.+.|.||...+.......
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn~~K~~~-~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~   78 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRNASKLAA-RQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDND   78 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeChHhccc-cccceeecccccChhhhHhhhcCCceEEEeccCCCCChh
Confidence            589999999999999999999 799999999999987543 278889999999999999999999987777554322211


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecc-cccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH---
Q 042242          109 ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM-KHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL---  184 (303)
Q Consensus       109 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~-~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~---  184 (303)
                              .........+++.++..+  ..++....|. .-|..+         ...-.|.   |..|.-||...+.   
T Consensus        79 --------~~~~k~~~~li~~l~~ag--v~RllVVGGAGSL~id~---------g~rLvD~---p~fP~ey~~~A~~~ae  136 (211)
T COG2910          79 --------ELHSKSIEALIEALKGAG--VPRLLVVGGAGSLEIDE---------GTRLVDT---PDFPAEYKPEALAQAE  136 (211)
T ss_pred             --------HHHHHHHHHHHHHHhhcC--CeeEEEEcCccceEEcC---------CceeecC---CCCchhHHHHHHHHHH
Confidence                    122233556777777642  2233333332 122111         1111222   2344334444322   


Q ss_pred             -HHHHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHh
Q 042242          185 -LKEKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVA  262 (303)
Q Consensus       185 -~~e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~  262 (303)
                       +..+..+. ++||.+-|+..+-|+.+.+ ++           +-.+..+...-.++       +.++..|.|.+++..+
T Consensus       137 ~L~~Lr~~~~l~WTfvSPaa~f~PGerTg-~y-----------rlggD~ll~n~~G~-------SrIS~aDYAiA~lDe~  197 (211)
T COG2910         137 FLDSLRAEKSLDWTFVSPAAFFEPGERTG-NY-----------RLGGDQLLVNAKGE-------SRISYADYAIAVLDEL  197 (211)
T ss_pred             HHHHHhhccCcceEEeCcHHhcCCccccC-ce-----------EeccceEEEcCCCc-------eeeeHHHHHHHHHHHH
Confidence             22233333 9999999999999866533 11           00122333332222       2567788899999999


Q ss_pred             cCcCCcCCCCceEEe
Q 042242          263 TNDDISSTKGQAFNA  277 (303)
Q Consensus       263 ~~~~~~~~~g~~yni  277 (303)
                      +.+...+   +.|-+
T Consensus       198 E~~~h~r---qRftv  209 (211)
T COG2910         198 EKPQHIR---QRFTV  209 (211)
T ss_pred             hcccccc---eeeee
Confidence            9998766   77755

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.60  E-value=1.5e-13  Score=115.42  Aligned_cols=157  Identities=18%  Similarity=0.073  Sum_probs=103.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~   95 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|+.....    ....++.++++|+.|.+++..+++       .+|.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFL-AEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999 68999999999764322    112357788999999887665554       3466


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeec-ccccccccCCCcccccCCcCcCCCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTG-MKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~-~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      |+|+++....    ..+.....+.++.|+.++.++++++........+++..++ ...|+.+                  
T Consensus        84 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~------------------  145 (249)
T PRK06500         84 VFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMP------------------  145 (249)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCC------------------
Confidence            8888765322    2233445568999999999999999864111122333322 1122100                  


Q ss_pred             CCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeec
Q 042242          171 VSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~  206 (303)
                       ...+   |+.+|...+     +.   ... +++.++||+.++++
T Consensus       146 -~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~  186 (249)
T PRK06500        146 -NSSV---YAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTP  186 (249)
T ss_pred             -CccH---HHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCH
Confidence             0223   666655443     11   112 99999999999985

>PRK06194 hypothetical protein; Provisional

Probab=99.60  E-value=1.4e-13  Score=118.16  Aligned_cols=105  Identities=15%  Similarity=0.060  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc--CCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ--SSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~--~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .+++||||||+|+||++++++|+ +.|++|++++|+.....     ..  ..++.++.+|++|.++++++++.       
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGA-ALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999 68999999999754321     11  23577799999999999888775       


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                      +|.|+|+++....    ..+..+....+++|+.++.++++++..
T Consensus        84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~  127 (287)
T PRK06194         84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTP  127 (287)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4679999776432    223344556789999999998777543

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.60  E-value=1.5e-13  Score=116.20  Aligned_cols=224  Identities=13%  Similarity=0.085  Sum_probs=134.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +++++++||||+|.||++++++|+ +.|++|++++|+++...      ....++.++.+|+++.+++.++++.       
T Consensus         5 l~~~~ilItGasggiG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLA-EEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGR   83 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHH-HcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            456899999999999999999999 68999999999876431      1134678899999999988887764       


Q ss_pred             cCceeEEeecccc---cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           93 LEDVTHIFWVTWA---SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        93 ~~~V~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      +|.|+|+++....   .....+..+.++.|+.++..+.+.+... .....++++.++...+.+.                
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~----------------  147 (258)
T PRK08628         84 IDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQ----------------  147 (258)
T ss_pred             CCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCC----------------
Confidence            4668888764211   1122344457899999999988887653 1112345555442221000                


Q ss_pred             CCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccc-hhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYN-FLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                        .+...   |+.+|...+     ..   ... ++++.++|+.++++....... ..........+.+  ..+  ..   
T Consensus       148 --~~~~~---Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~~--~~---  215 (258)
T PRK08628        148 --GGTSG---YAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITA--KIP--LG---  215 (258)
T ss_pred             --CCCch---hHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHh--cCC--cc---
Confidence              00122   666655443     11   122 999999999999852111000 0000000000000  001  00   


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHh
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                             ..+.+++|+|.++++++...... ..|+.|.+.++ ...+++
T Consensus       216 -------~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~gg-~~~~~~  255 (258)
T PRK08628        216 -------HRMTTAEEIADTAVFLLSERSSH-TTGQWLFVDGG-YVHLDR  255 (258)
T ss_pred             -------ccCCCHHHHHHHHHHHhChhhcc-ccCceEEecCC-cccccc
Confidence                   12568899999999988765322 33577777655 334443

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.60  E-value=2.3e-13  Score=114.71  Aligned_cols=213  Identities=13%  Similarity=0.110  Sum_probs=132.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      .+++|+||||+|+||++++++|+ +.|++|++++|++....    .....+.++.+|+.+.+++.++++.       .|.
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFA-AKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999 68999999999765321    1123566889999999988877764       466


Q ss_pred             eeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      ++|+++.....    ....+..+.+++|+.++.++++++...  .....+++.+++...+.+            ...   
T Consensus        93 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~---  157 (255)
T PRK06841         93 LVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVA------------LER---  157 (255)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccC------------CCC---
Confidence            88887653221    223344457899999999999998754  112334554443211100            000   


Q ss_pred             CCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                         ..+   |+.+|...+         +. .+ +++..++|+.+..+.......  ... . .....  ..|        
T Consensus       158 ---~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~pg~v~t~~~~~~~~--~~~-~-~~~~~--~~~--------  216 (255)
T PRK06841        158 ---HVA---YCASKAGVVGMTKVLALEWGPYG-ITVNAISPTVVLTELGKKAWA--GEK-G-ERAKK--LIP--------  216 (255)
T ss_pred             ---Cch---HHHHHHHHHHHHHHHHHHHHhhC-eEEEEEEeCcCcCcccccccc--hhH-H-HHHHh--cCC--------
Confidence               112   666555432         12 23 999999999888742211100  000 0 00110  111        


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                           ...+.+++|+|+++++++..+... ..|+.+.+.++..
T Consensus       217 -----~~~~~~~~~va~~~~~l~~~~~~~-~~G~~i~~dgg~~  253 (255)
T PRK06841        217 -----AGRFAYPEEIAAAALFLASDAAAM-ITGENLVIDGGYT  253 (255)
T ss_pred             -----CCCCcCHHHHHHHHHHHcCccccC-ccCCEEEECCCcc
Confidence                 112568899999999988665332 3468888877653

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.60  E-value=1.9e-13  Score=114.83  Aligned_cols=213  Identities=15%  Similarity=0.061  Sum_probs=131.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .+++++||||+|+||++++++|+ +.|++|++++|++.+..     .  ...++.++.+|+.|.++++++++.       
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALA-EAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999 68999999998865422     1  123578899999999988877753       


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-C-CccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA-K-ALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.|+|+++....    ..+.....+.++.|+.++.++++++.... . +-.+++++++...+.+.            . 
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~-  151 (250)
T PRK12939         85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA------------P-  151 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC------------C-
Confidence            5668888765322    22233444578899999999999887541 1 12245554442222110            0 


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                           ....   |..+|...+     ..   ... ++++.++|+.+..+.......  ..+  ......  .        
T Consensus       152 -----~~~~---y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--~~~--~~~~~~--~--------  209 (250)
T PRK12939        152 -----KLGA---YVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA--DER--HAYYLK--G--------  209 (250)
T ss_pred             -----Ccch---HHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC--hHH--HHHHHh--c--------
Confidence                 0112   555444333     11   112 899999999887643221100  000  000100  1        


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                           .....+.+++|+|.+++.++..+... ..|+.+.+.++.
T Consensus       210 -----~~~~~~~~~~dva~~~~~l~~~~~~~-~~G~~i~~~gg~  247 (250)
T PRK12939        210 -----RALERLQVPDDVAGAVLFLLSDAARF-VTGQLLPVNGGF  247 (250)
T ss_pred             -----CCCCCCCCHHHHHHHHHHHhCccccC-ccCcEEEECCCc
Confidence                 11122567899999999988764321 345888888764

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.60  E-value=9e-14  Score=116.54  Aligned_cols=212  Identities=12%  Similarity=0.062  Sum_probs=130.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +|+++++||||+|+||++++++|+ +.|++|+++ +|++....       ....++.++.+|++|.+++.++++      
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~-~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLA-KEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF   81 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            466899999999999999999998 689999988 88754421       012357889999999998877776      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.|+|.++....    ..+.....+.+++|+.++.++++.+...  ..+..+++.+++...+.+.          + 
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~----------~-  150 (247)
T PRK05565         82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGA----------S-  150 (247)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCC----------C-
Confidence             46678888665321    1223344557899999998888887754  1122344444432222110          0 


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                           .  ..+   |+.+|...+         .. .+ ++++.+||+.+..+......   ...  ...+..      . 
T Consensus       151 -----~--~~~---y~~sK~a~~~~~~~~~~~~~~~g-i~~~~v~pg~v~t~~~~~~~---~~~--~~~~~~------~-  207 (247)
T PRK05565        151 -----C--EVL---YSASKGAVNAFTKALAKELAPSG-IRVNAVAPGAIDTEMWSSFS---EED--KEGLAE------E-  207 (247)
T ss_pred             -----C--ccH---HHHHHHHHHHHHHHHHHHHHHcC-eEEEEEEECCccCccccccC---hHH--HHHHHh------c-
Confidence                 0  112   555443222         11 23 99999999998763222110   110  000100      0 


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              .....+...++++..+++++...... ..|+.+++.++.
T Consensus       208 --------~~~~~~~~~~~va~~~~~l~~~~~~~-~~g~~~~~~~~~  245 (247)
T PRK05565        208 --------IPLGRLGKPEEIAKVVLFLASDDASY-ITGQIITVDGGW  245 (247)
T ss_pred             --------CCCCCCCCHHHHHHHHHHHcCCccCC-ccCcEEEecCCc
Confidence                    01112457789999998888665432 456888887764

>PRK06398 aldose dehydrogenase; Validated

Probab=99.59  E-value=2.9e-13  Score=114.41  Aligned_cols=217  Identities=10%  Similarity=0.024  Sum_probs=129.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-------cCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-------LEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~~   98 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|+....    ..+.++++|+.|++++.++++.       +|.++|
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~-~~G~~Vi~~~r~~~~~----~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~   78 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLK-EEGSNVINFDIKEPSY----NDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN   78 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEeCCcccc----CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            356899999999999999999999 6899999999986542    3678899999999988777763       456888


Q ss_pred             Eeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           99 IFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        99 ~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      .++...    ......+..+.+++|+.++..+++++.+..  ....+++.+++...+...                  .+
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~  140 (258)
T PRK06398         79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVT------------------RN  140 (258)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCC------------------CC
Confidence            765432    122334445678999999999988876541  222345554442222100                  00


Q ss_pred             CCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchh--hHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          173 KSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFL--GCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      ...   |+.+|...+         +... +++..++|+.+-.+-........  .....+.........  .        
T Consensus       141 ~~~---Y~~sKaal~~~~~~la~e~~~~-i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------  206 (258)
T PRK06398        141 AAA---YVTSKHAVLGLTRSIAVDYAPT-IRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGE--M--------  206 (258)
T ss_pred             Cch---hhhhHHHHHHHHHHHHHHhCCC-CEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhh--c--------
Confidence            222   555554433         2223 88999999988653111000000  000000000000000  0        


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                       ..+..+.+++++|.++++++...... ..|+.+.+.++.
T Consensus       207 -~~~~~~~~p~eva~~~~~l~s~~~~~-~~G~~i~~dgg~  244 (258)
T PRK06398        207 -HPMKRVGKPEEVAYVVAFLASDLASF-ITGECVTVDGGL  244 (258)
T ss_pred             -CCcCCCcCHHHHHHHHHHHcCcccCC-CCCcEEEECCcc
Confidence             11122567899999999887644321 345778777765

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.59  E-value=1.8e-13  Score=110.27  Aligned_cols=195  Identities=19%  Similarity=0.202  Sum_probs=127.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc---cC--CCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI---QS--SSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~---~~--~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      .+|.|+|||||..||.++++.|. ..|++|++..|+.+....   +.  ..+..+..|++|.+++..+++       .+|
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~-~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           5 KGKVALITGASSGIGEATARALA-EAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence            35789999999999999999999 799999999999876431   11  357888999999988555443       345


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc-----cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR-----AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .++|-|+....    .....++..++++|+.|+.+...+....     ...++.+++++|...|.+.             
T Consensus        84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~-------------  150 (246)
T COG4221          84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGG-------------  150 (246)
T ss_pred             EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCC-------------
Confidence            45555544322    2234556679999999999998887765     2345555555554454211             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                              .-   |..+|....        ...+. ++++.+-|+.+-..--. .                    +.+.|
T Consensus       151 --------~v---Y~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s-~--------------------v~~~g  198 (246)
T COG4221         151 --------AV---YGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFS-T--------------------VRFEG  198 (246)
T ss_pred             --------cc---chhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecc-c--------------------ccCCc
Confidence                    11   555544333        33344 99999999988552110 1                    11111


Q ss_pred             chhhhhh--hcccCccHHHHHHHHHHHhcCcCC
Q 042242          237 TREIWEE--YCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       237 ~~~~~~~--~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                      +......  ......+++|+|+++++++..|..
T Consensus       199 ~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~  231 (246)
T COG4221         199 DDERADKVYKGGTALTPEDIAEAVLFAATQPQH  231 (246)
T ss_pred             hhhhHHHHhccCCCCCHHHHHHHHHHHHhCCCc
Confidence            1111101  123467889999999999998864

>PRK08324 short chain dehydrogenase; Validated

Probab=99.59  E-value=7.3e-14  Score=133.27  Aligned_cols=228  Identities=14%  Similarity=0.053  Sum_probs=136.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cC--CCeEEEEecCCCHHHHHHHHh-------
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QS--SSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~--~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ..++++|+||||+|+||+.++++|+ ..|++|++++|++.....    ..  .++.++.+|++|.+++.++++       
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~-~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLA-AEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHH-HCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4457899999999999999999999 689999999998755321    11  367889999999998887776       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccC--Cc-cEEEEeecccccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAK--AL-KHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~-~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      ++|.|+|+++....    ..+.......+++|+.++..+++++.....  .. .+++++++...+...            
T Consensus       498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~------------  565 (681)
T PRK08324        498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG------------  565 (681)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC------------
Confidence            35668888764322    223344455889999999999887765411  11 344444432121000            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCcee-ecCCCCccchhhHHHHHHHHhhhCCCcee-
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLL-GSSHRSLYNFLGCLCVYGAVCKHLNLPFV-  233 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  233 (303)
                            ....+   |+.+|...+     +.   ... +++.+++|+.+| +.+....     .+........  +.+.. 
T Consensus       566 ------~~~~~---Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~-----~~~~~~~~~~--g~~~~~  629 (681)
T PRK08324        566 ------PNFGA---YGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTG-----EWIEARAAAY--GLSEEE  629 (681)
T ss_pred             ------CCcHH---HHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccc-----hhhhhhhhhc--cCChHH
Confidence                  00223   777665544     11   122 999999999998 5321111     0000000000  11100 


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      ........ ..+..+++++|+|.++++++...... ..|.+|++.++...
T Consensus       630 ~~~~~~~~-~~l~~~v~~~DvA~a~~~l~s~~~~~-~tG~~i~vdgG~~~  677 (681)
T PRK08324        630 LEEFYRAR-NLLKREVTPEDVAEAVVFLASGLLSK-TTGAIITVDGGNAA  677 (681)
T ss_pred             HHHHHHhc-CCcCCccCHHHHHHHHHHHhCccccC-CcCCEEEECCCchh
Confidence            00000000 23345788999999999987422111 34589999988643

>PRK12743 oxidoreductase; Provisional

Probab=99.59  E-value=3.4e-13  Score=113.82  Aligned_cols=212  Identities=13%  Similarity=0.030  Sum_probs=128.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      |+++|+||||+|+||++++++|+ +.|++|+++.|+.....        .....+.++.+|+++.++++++++.      
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLA-QQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999 68999988876543211        1123578899999999988776654      


Q ss_pred             -cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-C--CccEEEEeecccccccccCCCcccccCCc
Q 042242           93 -LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA-K--ALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 -~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~--~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .|.++|+++....    .....+..+.+++|+.++..+++++.... .  +-.+++.+++...            ..  
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~------------~~--  145 (256)
T PRK12743         80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHE------------HT--  145 (256)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccc------------cC--
Confidence             4568887654221    22334455688999999999999877641 1  1123444433111            00  


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +..+...   |+.+|...+     ..     .+ ++++.++|+.+.++......   ....  ....  ...+   
T Consensus       146 ----~~~~~~~---Y~~sK~a~~~l~~~la~~~~~~~-i~v~~v~Pg~~~t~~~~~~~---~~~~--~~~~--~~~~---  207 (256)
T PRK12743        146 ----PLPGASA---YTAAKHALGGLTKAMALELVEHG-ILVNAVAPGAIATPMNGMDD---SDVK--PDSR--PGIP---  207 (256)
T ss_pred             ----CCCCcch---hHHHHHHHHHHHHHHHHHhhhhC-eEEEEEEeCCccCccccccC---hHHH--HHHH--hcCC---
Confidence                1111122   565554432     11     23 99999999999985322110   0100  0000  0111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                ...+.+++|+|.++++++...... ..|..+.+.++..
T Consensus       208 ----------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~~dgg~~  244 (256)
T PRK12743        208 ----------LGRPGDTHEIASLVAWLCSEGASY-TTGQSLIVDGGFM  244 (256)
T ss_pred             ----------CCCCCCHHHHHHHHHHHhCccccC-cCCcEEEECCCcc
Confidence                      111457789999988887554322 3457888877754

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.59  E-value=4.1e-13  Score=112.43  Aligned_cols=212  Identities=11%  Similarity=0.122  Sum_probs=128.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      |.|+++||||+|+||+++++.|. ..|++|++++|+.....        ....++.++.+|+.|.+++.++++.      
T Consensus         1 ~~k~vlItG~s~~iG~~la~~l~-~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   79 (245)
T PRK12824          1 MKKIALVTGAKRGIGSAIARELL-NDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG   79 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45799999999999999999999 57899999999853210        1123588899999999988877764      


Q ss_pred             -cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       .|.++|.++...    .........+.++.|+.++.++..++.+.  .....+++.+++...+.+.             
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~-------------  146 (245)
T PRK12824         80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQ-------------  146 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCC-------------
Confidence             456888865432    22234455568899999988886665432  1123355555442222110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +.  ...   |..+|...+         .. .+ +++++++|+.+.++......   ...  ......  ..+    
T Consensus       147 ---~~--~~~---Y~~sK~a~~~~~~~l~~~~~~~~-i~v~~v~pg~~~t~~~~~~~---~~~--~~~~~~--~~~----  206 (245)
T PRK12824        147 ---FG--QTN---YSAAKAGMIGFTKALASEGARYG-ITVNCIAPGYIATPMVEQMG---PEV--LQSIVN--QIP----  206 (245)
T ss_pred             ---CC--ChH---HHHHHHHHHHHHHHHHHHHHHhC-eEEEEEEEcccCCcchhhcC---HHH--HHHHHh--cCC----
Confidence               00  112   666654222         11 23 89999999999874322110   110  001111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                               +....+++++++++..++..... ...|+.+++.++..
T Consensus       207 ---------~~~~~~~~~va~~~~~l~~~~~~-~~~G~~~~~~~g~~  243 (245)
T PRK12824        207 ---------MKRLGTPEEIAAAVAFLVSEAAG-FITGETISINGGLY  243 (245)
T ss_pred             ---------CCCCCCHHHHHHHHHHHcCcccc-CccCcEEEECCCee
Confidence                     11244678889888877754322 14568999988754

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.58  E-value=4e-13  Score=112.84  Aligned_cols=214  Identities=14%  Similarity=0.104  Sum_probs=128.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+.....     ....++.++.+|+++.+++.++++.       .
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   81 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHI   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            457899999999999999999999 68999999999753211     1123578899999999988776653       4


Q ss_pred             CceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCC-ccEEEEeecccccccccCCCcccccCCcCc
Q 042242           94 EDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKA-LKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        94 ~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~-~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      |.++|+++.....    .......+.++.|+.++..+++++...  ... ..+++.+++...|...              
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------------  147 (248)
T TIGR01832        82 DILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG--------------  147 (248)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC--------------
Confidence            5588886543221    123344457899999999999988654  111 2345554443333111              


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                        +.  ...   |..+|...+     .   .... +++++++|+.+..+....... ....  .....+  ..|      
T Consensus       148 --~~--~~~---Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~--~~~~~~--~~~------  209 (248)
T TIGR01832       148 --IR--VPS---YTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRA-DEDR--NAAILE--RIP------  209 (248)
T ss_pred             --CC--Cch---hHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcccc-ChHH--HHHHHh--cCC------
Confidence              00  112   555554333     1   1122 999999999998742211100 0000  000100  111      


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                             ...+.+++|+|+++++++...... ..|..+.+.++
T Consensus       210 -------~~~~~~~~dva~~~~~l~s~~~~~-~~G~~i~~dgg  244 (248)
T TIGR01832       210 -------AGRWGTPDDIGGPAVFLASSASDY-VNGYTLAVDGG  244 (248)
T ss_pred             -------CCCCcCHHHHHHHHHHHcCccccC-cCCcEEEeCCC
Confidence                   112667899999999988654322 23466655554

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.58  E-value=2.3e-13  Score=113.41  Aligned_cols=204  Identities=14%  Similarity=0.118  Sum_probs=127.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHh-------cc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLT-------LL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~-------~~   93 (303)
                      ++++|+||||+|+||++++++|+ ..|++|++++|++.+..     . ...+++++++|+.+.+++.+.++       .+
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            45899999999999999999999 57999999999875432     1 11468889999999998888776       45


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      |.|+|+++....    ........+.++.|+.++..+++++.+.. ....+++++++...+.            +.    
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------~~----  147 (237)
T PRK07326         84 DVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN------------FF----  147 (237)
T ss_pred             CEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc------------CC----
Confidence            668888654322    12333444678999999999988876542 2223455544321110            00    


Q ss_pred             CCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                        .....   |..+|...+     .   .... ++++++||+.+.++.....                   +    ....
T Consensus       148 --~~~~~---y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~-------------------~----~~~~  199 (237)
T PRK07326        148 --AGGAA---YNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT-------------------P----SEKD  199 (237)
T ss_pred             --CCCch---HHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc-------------------c----chhh
Confidence              00122   555543222     1   1122 9999999998876321100                   0    0000


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      .+      .++.+|++..++.++..+...-  +....+..+.+.
T Consensus       200 ~~------~~~~~d~a~~~~~~l~~~~~~~--~~~~~~~~~~~~  235 (237)
T PRK07326        200 AW------KIQPEDIAQLVLDLLKMPPRTL--PSKIEVRPSRPP  235 (237)
T ss_pred             hc------cCCHHHHHHHHHHHHhCCcccc--ccceEEecCCCC
Confidence            11      3678999999999887765421  245556655543

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.58  E-value=4.7e-13  Score=111.47  Aligned_cols=211  Identities=14%  Similarity=0.145  Sum_probs=127.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCH-HHHHHHHhccCceeEEeecc-
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNP-LDIKRKLTLLEDVTHIFWVT-  103 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~-~~l~~~~~~~~~V~~~~~~~-  103 (303)
                      .++|+++||||+|+||+++++.|+ +.|++|++++|++...  ...++.++.+|+.+. +.+.+.+..+|.++|.++.. 
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~~~   79 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFL-AQGAQVYGVDKQDKPD--LSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGILD   79 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHH-HCCCEEEEEeCCcccc--cCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCCCC
Confidence            356899999999999999999999 6899999999986542  234678889999987 44444445567788886532 


Q ss_pred             ----cccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccc
Q 042242          104 ----WASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNF  177 (303)
Q Consensus       104 ----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~  177 (303)
                          .......+..+.+++|+.++.++++++....  .+..+++++++...+.+.                +.  ...  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------~~--~~~--  139 (235)
T PRK06550         80 DYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG----------------GG--GAA--  139 (235)
T ss_pred             CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC----------------CC--Ccc--
Confidence                1222344455689999999999999887541  122345554442222110                00  112  


Q ss_pred             hHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhccc
Q 042242          178 YYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLD  247 (303)
Q Consensus       178 ~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  247 (303)
                       |+.+|...+         +. .+ +++++++|+.+.++.....+.  .. .......+  ..|             ...
T Consensus       140 -Y~~sK~a~~~~~~~la~~~~~~g-i~v~~v~pg~v~t~~~~~~~~--~~-~~~~~~~~--~~~-------------~~~  199 (235)
T PRK06550        140 -YTASKHALAGFTKQLALDYAKDG-IQVFGIAPGAVKTPMTAADFE--PG-GLADWVAR--ETP-------------IKR  199 (235)
T ss_pred             -cHHHHHHHHHHHHHHHHHhhhcC-eEEEEEeeCCccCcccccccC--ch-HHHHHHhc--cCC-------------cCC
Confidence             444443322         21 23 999999999998753221110  01 00000111  111             112


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      +...+++|.++++++...... ..|..+.+.++
T Consensus       200 ~~~~~~~a~~~~~l~s~~~~~-~~g~~~~~~gg  231 (235)
T PRK06550        200 WAEPEEVAELTLFLASGKADY-MQGTIVPIDGG  231 (235)
T ss_pred             CCCHHHHHHHHHHHcChhhcc-CCCcEEEECCc
Confidence            457789999999987544321 34577777665

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.58  E-value=1.6e-13  Score=116.23  Aligned_cols=196  Identities=17%  Similarity=0.120  Sum_probs=122.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      ++||||||+|+||+++++.|+ ..|++|++++|++.+..       ....++.++.+|+.|.+++..+++.       .|
T Consensus         2 ~~vlVtGasg~iG~~la~~l~-~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLA-RAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            689999999999999999999 68999999999865421       1123577889999999988887763       46


Q ss_pred             ceeEEeecccccC-----ChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWASQ-----FASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .|+|+++......     ..+...+.++.|+.++.++++.+... .....+++.+++...|.+.                
T Consensus        81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------  144 (263)
T PRK06181         81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGV----------------  144 (263)
T ss_pred             EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCC----------------
Confidence            6888876533221     22233457899999999999998653 1112344444432222110                


Q ss_pred             CCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                        .+..+   |+.+|...+     +   .... +++++++|+.+..+......   ..          .+.+....+   
T Consensus       145 --~~~~~---Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~---~~----------~~~~~~~~~---  203 (263)
T PRK06181        145 --PTRSG---YAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRAL---DG----------DGKPLGKSP---  203 (263)
T ss_pred             --CCccH---HHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhc---cc----------ccccccccc---
Confidence              01223   777666443     1   1122 99999999988763211110   00          011111111   


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                         .....+.+++|+|++++.++..+
T Consensus       204 ---~~~~~~~~~~dva~~i~~~~~~~  226 (263)
T PRK06181        204 ---MQESKIMSAEECAEAILPAIARR  226 (263)
T ss_pred             ---ccccCCCCHHHHHHHHHHHhhCC
Confidence               11124788999999999988754

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.58  E-value=2.3e-13  Score=114.94  Aligned_cols=216  Identities=12%  Similarity=0.043  Sum_probs=127.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------c--cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------I--QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~--~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      ++|+++||||+|+||+++++.|+ +.|++|++++++.....         .  ...++.++++|+++.++++++++.   
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~-~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   85 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLA-AQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA   85 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHH-HCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence            46899999999999999999999 68999777776543210         0  123577889999999998877764   


Q ss_pred             ----cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEe-ecc-cccccccCCCcccccC
Q 042242           93 ----LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQ-TGM-KHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ----~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~-s~~-~~y~~~~~~~g~~~~~  162 (303)
                          +|.++|.++...    ...+..+..+.+++|+.++..+++++......-.+++.+ ++. ..+.            
T Consensus        86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~------------  153 (257)
T PRK12744         86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT------------  153 (257)
T ss_pred             hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC------------
Confidence                456888876522    223344555689999999999999887642111122221 111 1110            


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            +.  ...   |+.+|...+     ++   ... +++++++|+.+.++.......  .....+. .......+  
T Consensus       154 ------~~--~~~---Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~--~~~~~~~-~~~~~~~~--  217 (257)
T PRK12744        154 ------PF--YSA---YAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG--AEAVAYH-KTAAALSP--  217 (257)
T ss_pred             ------CC--ccc---chhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc--cchhhcc-cccccccc--
Confidence                  00  122   555554443     21   122 899999999997642111100  0000000 00000011  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                               .....+.+++|+|.++.+++.....  ..|+++++.++..
T Consensus       218 ---------~~~~~~~~~~dva~~~~~l~~~~~~--~~g~~~~~~gg~~  255 (257)
T PRK12744        218 ---------FSKTGLTDIEDIVPFIRFLVTDGWW--ITGQTILINGGYT  255 (257)
T ss_pred             ---------cccCCCCCHHHHHHHHHHhhcccce--eecceEeecCCcc
Confidence                     0011366889999999998874321  2358898887744

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.57  E-value=1.1e-13  Score=120.80  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      ++|+|+||||+|+||.+++++|+ ..|++|++++|+..+..     .  ....+.++.+|+.|.++++++++.       
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALA-KRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999 68999999999765431     1  123578889999999998887765       


Q ss_pred             cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 ~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +|.++|.|+....     ..+.......+++|+.++..+++++...
T Consensus        84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  129 (322)
T PRK07453         84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLED  129 (322)
T ss_pred             ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5668888764221     2233445568899999999998887754

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.57  E-value=4.1e-13  Score=113.72  Aligned_cols=216  Identities=16%  Similarity=0.133  Sum_probs=129.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++|+++||||+|.||++++++|+ +.|++|++++|+..+..    ....++.++++|+.|.+++.++++.       +|.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999 68999999999865422    1124578899999999988777764       455


Q ss_pred             eeEEeeccc---ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           96 VTHIFWVTW---ASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        96 V~~~~~~~~---~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      ++|.++...   ......+..+.+++|+.++..+++++.... .+-.+++.+++...+.+.                +. 
T Consensus        84 lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------------~~-  146 (261)
T PRK08265         84 LVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ----------------TG-  146 (261)
T ss_pred             EEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC----------------CC-
Confidence            778765421   122344455688999999999988876542 222344444432111000                00 


Q ss_pred             CCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          172 SKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                       ...   |..+|...+        ..... +++..++|+.+..+........  .......+    ... .         
T Consensus       147 -~~~---Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~--~~~~~~~~----~~~-~---------  206 (261)
T PRK08265        147 -RWL---YPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGG--DRAKADRV----AAP-F---------  206 (261)
T ss_pred             -Cch---hHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhccc--chhHHHHh----hcc-c---------
Confidence             112   555544332        11122 9999999998766321100000  00000000    000 0         


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ..+-.+...+|+|.++++++...... ..|+.+.+.++.
T Consensus       207 ~p~~r~~~p~dva~~~~~l~s~~~~~-~tG~~i~vdgg~  244 (261)
T PRK08265        207 HLLGRVGDPEEVAQVVAFLCSDAASF-VTGADYAVDGGY  244 (261)
T ss_pred             CCCCCccCHHHHHHHHHHHcCccccC-ccCcEEEECCCe
Confidence            11112457889999999988654322 445788787764

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.57  E-value=6.4e-13  Score=111.29  Aligned_cols=212  Identities=13%  Similarity=0.072  Sum_probs=127.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      ++++|+||||+|+||+++++.|+ +.|++|+++.|+.....        ....++.++.+|+.+.+++.++++.      
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999 68999888877643210        1134578899999999988888774      


Q ss_pred             -cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           93 -LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        93 -~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                       +|.++|+++....    ........+.++.|+.++.++++++.+....-.+++.+++...+.            +.   
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------~~---  147 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL------------PL---  147 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC------------CC---
Confidence             5668888764321    223334445789999999999988876422112344433321110            00   


Q ss_pred             CCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          168 CPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                         .+..+   |+.+|...+     ..   ... +++++++|+.+-.+.......  ...  ...+.+  ..|       
T Consensus       148 ---~~~~~---Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~~--~~~~~~--~~~-------  208 (245)
T PRK12937        148 ---PGYGP---YAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKS--AEQ--IDQLAG--LAP-------  208 (245)
T ss_pred             ---CCCch---hHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCC--HHH--HHHHHh--cCC-------
Confidence               00222   666555443     11   112 899999998877632111100  010  000111  111       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                            +....+.+|+|..+++++..+... ..|+.+++.++
T Consensus       209 ------~~~~~~~~d~a~~~~~l~~~~~~~-~~g~~~~~~~g  243 (245)
T PRK12937        209 ------LERLGTPEEIAAAVAFLAGPDGAW-VNGQVLRVNGG  243 (245)
T ss_pred             ------CCCCCCHHHHHHHHHHHcCccccC-ccccEEEeCCC
Confidence                  112447789999988888654321 34578888764

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.57  E-value=5.9e-13  Score=112.31  Aligned_cols=217  Identities=15%  Similarity=0.077  Sum_probs=127.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      ++|+++||||+|+||++++++|. +.|++|+++.|+.....  ....++.++.+|+.|.+++.++++.       .|.++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~-~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFL-REGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46899999999999999999999 68999988877654321  2223578899999999988887764       45688


Q ss_pred             EEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           98 HIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        98 ~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      |+++...    ...........+++|+.++..+...+.+..  .+..+++.+++...+...           . +     
T Consensus        85 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-----------~-~-----  147 (255)
T PRK06463         85 NNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA-----------A-E-----  147 (255)
T ss_pred             ECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC-----------C-C-----
Confidence            8865432    122334455688999999766655554431  122345555443222110           0 0     


Q ss_pred             CCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhh
Q 042242          172 SKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~  241 (303)
                      ....   |+.+|...+     ..   ... +++..++|+.+-.+-....... ........ ...  ..+          
T Consensus       148 ~~~~---Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~--~~~----------  211 (255)
T PRK06463        148 GTTF---YAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQ-EEAEKLRELFRN--KTV----------  211 (255)
T ss_pred             CccH---hHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCc-cchHHHHHHHHh--CCC----------
Confidence            0122   666554443     11   112 9999999998855321100000 00000000 000  111          


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                         +..+.+++++|.++++++..+... ..|..+.+.++.
T Consensus       212 ---~~~~~~~~~va~~~~~l~s~~~~~-~~G~~~~~dgg~  247 (255)
T PRK06463        212 ---LKTTGKPEDIANIVLFLASDDARY-ITGQVIVADGGR  247 (255)
T ss_pred             ---cCCCcCHHHHHHHHHHHcChhhcC-CCCCEEEECCCe
Confidence               112457889999999987654322 345888887765

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.57  E-value=7.3e-13  Score=111.51  Aligned_cols=213  Identities=13%  Similarity=0.101  Sum_probs=129.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c----ccCCCeEEEEecCCCHHHHHHHHhc--------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A----IQSSSYCFISCDLLNPLDIKRKLTL--------L   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~----~~~~~~~~~~~D~~~~~~l~~~~~~--------~   93 (303)
                      ++|+++||||+|+||+++++.|+ +.|++|+++.++.... .    ....++.++++|+.|++++.++++.        +
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~-~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i   82 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFA-REGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPI   82 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHH-HCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            35799999999999999999998 6899988876654321 1    1124678899999999988887764        5


Q ss_pred             CceeEEeeccc----------ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCccccc
Q 042242           94 EDVTHIFWVTW----------ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        94 ~~V~~~~~~~~----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                      |.++|.++...          ...+.....+.++.|+.++..+++++...  .....+++.+++...            .
T Consensus        83 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~------------~  150 (253)
T PRK08642         83 TTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLF------------Q  150 (253)
T ss_pred             eEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccc------------c
Confidence            66888865321          12233444567999999999999998754  112234444433111            0


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                            .+..|..+   |+.+|...+     ++   ... +++..++||.+..+.....  . .. ..+..+..  ..| 
T Consensus       151 ------~~~~~~~~---Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~--~-~~-~~~~~~~~--~~~-  214 (253)
T PRK08642        151 ------NPVVPYHD---YTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAA--T-PD-EVFDLIAA--TTP-  214 (253)
T ss_pred             ------CCCCCccc---hHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhcc--C-CH-HHHHHHHh--cCC-
Confidence                  01111223   777666554     21   122 8999999998876321110  0 01 00111111  111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                  +..+.+++|+|.++++++..+... ..|+.+.+.++.
T Consensus       215 ------------~~~~~~~~~va~~~~~l~~~~~~~-~~G~~~~vdgg~  250 (253)
T PRK08642        215 ------------LRKVTTPQEFADAVLFFASPWARA-VTGQNLVVDGGL  250 (253)
T ss_pred             ------------cCCCCCHHHHHHHHHHHcCchhcC-ccCCEEEeCCCe
Confidence                        112678899999999988754322 446788777663

>PRK12742 oxidoreductase; Provisional

Probab=99.57  E-value=6.3e-13  Score=110.78  Aligned_cols=212  Identities=11%  Similarity=0.063  Sum_probs=125.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c--ccCCCeEEEEecCCCHHHHHHHHhc---cCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A--IQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~--~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~   99 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|+++.|+.... .  ....++.++.+|+.|.+++.+.++.   .|.++|.
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~-~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~   82 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFV-TDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVN   82 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEEC
Confidence            456899999999999999999999 6899998887653321 1  1122467888999999888777764   4558888


Q ss_pred             eecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242          100 FWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus       100 ~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      ++....    ..+..+..+.+++|+.++..++..+......-.+++.+++....           ..      +..+..+
T Consensus        83 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~~------~~~~~~~  145 (237)
T PRK12742         83 AGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD-----------RM------PVAGMAA  145 (237)
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc-----------cC------CCCCCcc
Confidence            654321    22334455689999999998877766542112344444331110           00      1111223


Q ss_pred             cchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcc
Q 042242          176 NFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCL  246 (303)
Q Consensus       176 ~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  246 (303)
                         |+.+|...+     .   .... +++++++|+.+..+.....    ...  ......  ..+             +.
T Consensus       146 ---Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~----~~~--~~~~~~--~~~-------------~~  201 (237)
T PRK12742        146 ---YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPAN----GPM--KDMMHS--FMA-------------IK  201 (237)
T ss_pred             ---hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccc----cHH--HHHHHh--cCC-------------CC
Confidence               666555443     1   1122 9999999999976321111    010  000111  111             11


Q ss_pred             cCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          247 DGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       247 ~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      .+.+.++++.++.+++..... ...|..+.+.++
T Consensus       202 ~~~~p~~~a~~~~~l~s~~~~-~~~G~~~~~dgg  234 (237)
T PRK12742        202 RHGRPEEVAGMVAWLAGPEAS-FVTGAMHTIDGA  234 (237)
T ss_pred             CCCCHHHHHHHHHHHcCcccC-cccCCEEEeCCC
Confidence            145778999998888755432 134577777655

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.56  E-value=5.4e-13  Score=113.11  Aligned_cols=214  Identities=17%  Similarity=0.078  Sum_probs=130.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +.+++++||||+|+||.+++++|+ +.|++|++++|++.+..     .  ...++.++.+|+++.+++.++++       
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~-~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFA-EAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG   86 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999 68999999999865422     0  12357888999999998877766       


Q ss_pred             ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .+|.|+|+++...    ......+..+.+++|+.++.++++++....   ....+++.+++...+            .+ 
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~-  153 (263)
T PRK07814         87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGR------------LA-  153 (263)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcccccc------------CC-
Confidence            3466888876422    122334455688999999999999987531   122344444431111            00 


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           ..+..+   |+.+|...+         .... ++++.++|+.+..+......+ ...+.  ..+..  ..+    
T Consensus       154 -----~~~~~~---Y~~sK~a~~~~~~~~~~e~~~~-i~v~~i~Pg~v~t~~~~~~~~-~~~~~--~~~~~--~~~----  215 (263)
T PRK07814        154 -----GRGFAA---YGTAKAALAHYTRLAALDLCPR-IRVNAIAPGSILTSALEVVAA-NDELR--APMEK--ATP----  215 (263)
T ss_pred             -----CCCCch---hHHHHHHHHHHHHHHHHHHCCC-ceEEEEEeCCCcCchhhhccC-CHHHH--HHHHh--cCC----
Confidence                 001233   777665543         1122 788999998886532111000 00100  00000  011    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               +..+.+++|+|+++++++..... ...|..+.+.++.
T Consensus       216 ---------~~~~~~~~~va~~~~~l~~~~~~-~~~g~~~~~~~~~  251 (263)
T PRK07814        216 ---------LRRLGDPEDIAAAAVYLASPAGS-YLTGKTLEVDGGL  251 (263)
T ss_pred             ---------CCCCcCHHHHHHHHHHHcCcccc-CcCCCEEEECCCc
Confidence                     11245788999999998754322 1345777776553

>PRK08017 oxidoreductase; Provisional

Probab=99.56  E-value=2.8e-13  Score=114.28  Aligned_cols=200  Identities=16%  Similarity=0.132  Sum_probs=117.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhcc--------Ccee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLL--------EDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~--------~~V~   97 (303)
                      |.++|+||||+|+||+++++.|+ +.|++|++++|++.+.. ....+++.+++|+.|.+++.+.++.+        +.++
T Consensus         1 m~k~vlVtGasg~IG~~la~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii   79 (256)
T PRK08017          1 MQKSVLITGCSSGIGLEAALELK-RRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLF   79 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            45789999999999999999999 67999999999875432 22346788999999998877666443        3366


Q ss_pred             EEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           98 HIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        98 ~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      |.++....    ..+.....+.++.|+.++.++...+.+.  .....+++..++...+  .          +.    +  
T Consensus        80 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~--~----------~~----~--  141 (256)
T PRK08017         80 NNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGL--I----------ST----P--  141 (256)
T ss_pred             ECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccc--c----------CC----C--
Confidence            66543221    1133344468899999888764444332  1112344444432111  0          00    0  


Q ss_pred             CCCccchHHHHHHHHHH--------hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          172 SKSNNFYYVLEDLLKEK--------LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~--------~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      ...+   |+.+|...+.        .... ++++++||+.+........    ...        ....+...++      
T Consensus       142 ~~~~---Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~----~~~--------~~~~~~~~~~------  200 (256)
T PRK08017        142 GRGA---YAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNV----NQT--------QSDKPVENPG------  200 (256)
T ss_pred             CccH---HHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcc----cch--------hhccchhhhH------
Confidence            0223   6766654441        1222 9999999987754211110    000        0011111122      


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                      .....+++++|++++++.++..+.
T Consensus       201 ~~~~~~~~~~d~a~~~~~~~~~~~  224 (256)
T PRK08017        201 IAARFTLGPEAVVPKLRHALESPK  224 (256)
T ss_pred             HHhhcCCCHHHHHHHHHHHHhCCC
Confidence            111235788999999999887664

>PRK08643 acetoin reductase; Validated

Probab=99.56  E-value=8.9e-13  Score=111.26  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      |+|+++||||+|+||++++++|+ +.|++|++++|++....     .  ...++.++++|+.+++++.++++.       
T Consensus         1 ~~k~~lItGas~giG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          1 MSKVALVTGAGQGIGFAIAKRLV-EDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999 68999999999865421     1  123577889999999988777764       


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +|.++|+++....    ........+.+++|+.++..+++++...
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  124 (256)
T PRK08643         80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEA  124 (256)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4668888754321    1123344457899999988877777654

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.56  E-value=6.9e-13  Score=112.01  Aligned_cols=107  Identities=17%  Similarity=0.118  Sum_probs=81.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      .+.+++|+||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|+.+.+++.+.++.     
T Consensus         6 ~~~~k~ilItGasg~IG~~~a~~l~-~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (258)
T PRK06949          6 NLEGKVALVTGASSGLGARFAQVLA-QAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA   84 (258)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4567999999999999999999999 68999999999875532       1123678899999999988887764     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                        +|.++|+++....    ..........++.|+.++..+++++..
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  130 (258)
T PRK06949         85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAK  130 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHH
Confidence              5668888664321    122344556789999999988887764

>PRK08264 short chain dehydrogenase; Validated

Probab=99.56  E-value=2.1e-13  Score=113.74  Aligned_cols=158  Identities=15%  Similarity=0.117  Sum_probs=107.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc---cCceeEEeec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIFWV  102 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~~~  102 (303)
                      ++++|+||||+|+||+++++.|+ +.|+ +|++++|++.+......++.++.+|+.|.+++.++++.   +|.|+|.++.
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~-~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   83 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLL-ARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI   83 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            45799999999999999999999 6898 89999998765332235688999999999999888875   4568888765


Q ss_pred             cc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242          103 TW-----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus       103 ~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      ..     .........+.++.|+.++..+++++.+..  ....+++.+++...|.+.                  .+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~------------------~~~~~  145 (238)
T PRK08264         84 FRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF------------------PNLGT  145 (238)
T ss_pred             CCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCC------------------CCchH
Confidence            21     222344555678999999999999876531  122344444443222110                  00222


Q ss_pred             cchHHHHHHHHH--------HhcCC-cceEEecCCceeec
Q 042242          176 NFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       176 ~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~  206 (303)
                         |+.+|...+        ..... ++++++||+.+.++
T Consensus       146 ---y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~  182 (238)
T PRK08264        146 ---YSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTD  182 (238)
T ss_pred             ---hHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccc
Confidence               666555443        11112 99999999988763

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.56  E-value=9.5e-13  Score=111.25  Aligned_cols=214  Identities=11%  Similarity=0.074  Sum_probs=130.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +++|+||||||+|+||..++++|+ +.|++|++++|+.....    .  ...++.++.+|+.+.+++.++++.       
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   91 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALA-KAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK   91 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999 68999999998732111    1  123578899999999988887763       


Q ss_pred             cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.++|+++...    ......+..+.++.|+.++..+++++...  .....+++.+++...+.+.              
T Consensus        92 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------  157 (258)
T PRK06935         92 IDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGG--------------  157 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCC--------------
Confidence            466888866432    12233344568899999988888777654  1223345555543222111              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                        +.  ..+   |+.+|...+         +. .+ ++++.++|+.+..+....... ...  ....+..  ..|     
T Consensus       158 --~~--~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~i~PG~v~t~~~~~~~~-~~~--~~~~~~~--~~~-----  219 (258)
T PRK06935        158 --KF--VPA---YTASKHGVAGLTKAFANELAAYN-IQVNAIAPGYIKTANTAPIRA-DKN--RNDEILK--RIP-----  219 (258)
T ss_pred             --CC--chh---hHHHHHHHHHHHHHHHHHhhhhC-eEEEEEEeccccccchhhccc-ChH--HHHHHHh--cCC-----
Confidence              00  112   666555443         11 23 999999999987642211100 000  0001111  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              ...+.+++|+|.++++++..... ...|.++.+.++.
T Consensus       220 --------~~~~~~~~dva~~~~~l~s~~~~-~~~G~~i~~dgg~  255 (258)
T PRK06935        220 --------AGRWGEPDDLMGAAVFLASRASD-YVNGHILAVDGGW  255 (258)
T ss_pred             --------CCCCCCHHHHHHHHHHHcChhhc-CCCCCEEEECCCe
Confidence                    11255778899999888764432 2446788777764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.56  E-value=5.9e-13  Score=111.19  Aligned_cols=106  Identities=16%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      .+++++||||+|+||++++++|+ ..|++|++++|++.+..     .  ...++.++.+|+.+.+++.++++       .
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALA-KEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999 68999999999865421     1  12357788999999999888876       4


Q ss_pred             cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 ~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +|.|+|+++.....    .......+.++.|+.++.++++++...
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  129 (239)
T PRK07666         85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPS  129 (239)
T ss_pred             ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            56688887654321    223334457899999999998888753

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.56  E-value=1.1e-13  Score=118.27  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=102.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhc--------cCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTL--------LEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~--------~~~V~   97 (303)
                      |+++|+||||+|+||+++++.|. +.|++|++++|++.... ....+++++.+|++|.++++++++.        +|.++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~-~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQ-SDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            56899999999999999999998 68999999999876532 2234688899999999988777654        34577


Q ss_pred             EEeecccc----cCChHHHHHHHHHHHHHHHH----HHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           98 HIFWVTWA----SQFASDMHKCCEQNKAMMCN----ALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        98 ~~~~~~~~----~~~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      |.++....    ..+..+..+.+++|+.++..    ++..+++.  ...+++.+|+...+..                  
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~--~~g~iv~isS~~~~~~------------------  141 (277)
T PRK05993         82 NNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ--GQGRIVQCSSILGLVP------------------  141 (277)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc--CCCEEEEECChhhcCC------------------
Confidence            77654322    12234445688999999554    44444443  2234555544222100                  


Q ss_pred             CCCCCccchHHHHHHHHHH--------hcCC-cceEEecCCceeec
Q 042242          170 RVSKSNNFYYVLEDLLKEK--------LAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e~--------~~~~-~~~~ilRp~~v~G~  206 (303)
                      ..+..+   |+.+|...+.        .... +++++++||.+-.+
T Consensus       142 ~~~~~~---Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~  184 (277)
T PRK05993        142 MKYRGA---YNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR  184 (277)
T ss_pred             CCccch---HHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence            001223   7776665541        1122 99999999988763

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.56  E-value=8.3e-13  Score=111.65  Aligned_cols=215  Identities=16%  Similarity=0.121  Sum_probs=128.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      ++|++|||||+|+||+++++.|+ +.|++|++++|+..+..     .  ...++.++.+|++|+++++++++.       
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALG-EAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999 68999999999765421     0  123567899999999988766653       


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .|.|+|+++....    ........+.++.|+.++.++++++...   .....+++.+++...+.+..         +. 
T Consensus        90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~---------~~-  159 (259)
T PRK08213         90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNP---------PE-  159 (259)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCC---------cc-
Confidence            4668898764321    1223344457889999999999987653   12233555555432221110         00 


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          ..+..+   |..+|...+     ++   ... +++..++|+.+-.+....   ....+.  ..+..  ..++.   
T Consensus       160 ----~~~~~~---Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~---~~~~~~--~~~~~--~~~~~---  222 (259)
T PRK08213        160 ----VMDTIA---YNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG---TLERLG--EDLLA--HTPLG---  222 (259)
T ss_pred             ----ccCcch---HHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh---hhHHHH--HHHHh--cCCCC---
Confidence                001233   666655443     11   112 889999998876532111   111110  00111  12211   


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                                .+.+.+++|....+++...... ..|..+++.++
T Consensus       223 ----------~~~~~~~va~~~~~l~~~~~~~-~~G~~~~~~~~  255 (259)
T PRK08213        223 ----------RLGDDEDLKGAALLLASDASKH-ITGQILAVDGG  255 (259)
T ss_pred             ----------CCcCHHHHHHHHHHHhCccccC-ccCCEEEECCC
Confidence                      1346778888777776544321 34677877765

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.56  E-value=1.1e-13  Score=116.88  Aligned_cols=158  Identities=12%  Similarity=0.081  Sum_probs=103.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc-CCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ-SSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~-~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      |+++|+||||+|+||+++++.|+ +.|++|++++|++....     .. ..++.++.+|++|.+++.++++.       .
T Consensus         1 ~~~~vlItGas~gIG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i   79 (257)
T PRK07024          1 MPLKVFITGASSGIGQALAREYA-RQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLP   79 (257)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            45799999999999999999999 68999999999865432     11 11678899999999988877664       4


Q ss_pred             CceeEEeeccccc-----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           94 EDVTHIFWVTWAS-----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        94 ~~V~~~~~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      |.++|.++.....     .+.....+.+++|+.++..+++.+...  ..+..+++.+++...+.+            .  
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~------------~--  145 (257)
T PRK07024         80 DVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRG------------L--  145 (257)
T ss_pred             CEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC------------C--
Confidence            6688886643211     233445568999999999988755432  112234444443212100            0  


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeec
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~  206 (303)
                        +.  ...   |+.+|...+     +   .... ++++++||+.+.++
T Consensus       146 --~~--~~~---Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~  187 (257)
T PRK07024        146 --PG--AGA---YSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTP  187 (257)
T ss_pred             --CC--Ccc---hHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCc
Confidence              00  122   666555443     1   1222 99999999999873

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.56  E-value=1.8e-13  Score=115.49  Aligned_cols=118  Identities=14%  Similarity=0.066  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-ccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-LLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-~~~~V~~   98 (303)
                      |+++||||||+|+||++++++|+ ..|++|++++|++.+..       ....++.++.+|+.|.+++.+++. .+|.|+|
T Consensus         1 m~~~vlVtGasg~iG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~   79 (257)
T PRK09291          1 MSKTILITGAGSGFGREVALRLA-RKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN   79 (257)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence            46799999999999999999999 68999999999765421       112357889999999999988886 6777888


Q ss_pred             Eeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeec
Q 042242           99 IFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTG  145 (303)
Q Consensus        99 ~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~  145 (303)
                      +++....    ..+.......+++|+.++..+.+.+...  .....+++.+|+
T Consensus        80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS  132 (257)
T PRK09291         80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSS  132 (257)
T ss_pred             CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcC
Confidence            8764321    1223333447888998887776655432  112245555544

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.55  E-value=4.7e-13  Score=111.93  Aligned_cols=190  Identities=16%  Similarity=0.111  Sum_probs=121.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------cCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------QSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +|+++||||+|+||+.++++|+ +.|++|++++|++.+...       ...++.++.+|++|.+++..+++.       +
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFA-KAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP   84 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999 689999999998654320       123678899999999988777764       5


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.++|.++....    ........+.+++|+.++.++++.+...  ..+..+++.+++...|...               
T Consensus        85 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------  149 (241)
T PRK07454         85 DVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF---------------  149 (241)
T ss_pred             CEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC---------------
Confidence            668888654321    1223344557899999988888777543  1223455555543233111               


Q ss_pred             CCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                         .+..+   |+.+|...+         .. .+ ++++++||+.+-.+.....     .           ... .... 
T Consensus       150 ---~~~~~---Y~~sK~~~~~~~~~~a~e~~~~g-i~v~~i~pg~i~t~~~~~~-----~-----------~~~-~~~~-  204 (241)
T PRK07454        150 ---PQWGA---YCVSKAALAAFTKCLAEEERSHG-IRVCTITLGAVNTPLWDTE-----T-----------VQA-DFDR-  204 (241)
T ss_pred             ---CCccH---HHHHHHHHHHHHHHHHHHhhhhC-CEEEEEecCcccCCccccc-----c-----------ccc-cccc-
Confidence               00223   666555433         11 23 9999999999876321100     0           000 0000 


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                              ....+.+++|+++++++..+.
T Consensus       205 --------~~~~~~~~va~~~~~l~~~~~  225 (241)
T PRK07454        205 --------SAMLSPEQVAQTILHLAQLPP  225 (241)
T ss_pred             --------ccCCCHHHHHHHHHHHHcCCc
Confidence                    114678999999999987764

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.55  E-value=2.6e-13  Score=113.66  Aligned_cols=211  Identities=15%  Similarity=0.097  Sum_probs=126.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++++++||||+|+||+++++.|+ +.|+.|++.+|+..+..    ....++.++.+|+.+.+++.++++.       +|.
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLH-AQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI   83 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999 68899988888765432    1123578889999999988776643       566


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      |+|+++....    .....+..+.++.|+.++.++++++.+.  .....+++++++...+.+.          +      
T Consensus        84 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~------  147 (245)
T PRK12936         84 LVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN----------P------  147 (245)
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC----------C------
Confidence            8888765321    1233444568899999999888887543  1122344554432121010          0      


Q ss_pred             CCCCCccchHHHHHH--------HHHHh--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          170 RVSKSNNFYYVLEDL--------LKEKL--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~--------~~e~~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      .  ...   |+.+|.        +....  .+ +++++++|+.+..+.....    .... ......  ..         
T Consensus       148 ~--~~~---Y~~sk~a~~~~~~~la~~~~~~~-i~v~~i~pg~~~t~~~~~~----~~~~-~~~~~~--~~---------  205 (245)
T PRK12936        148 G--QAN---YCASKAGMIGFSKSLAQEIATRN-VTVNCVAPGFIESAMTGKL----NDKQ-KEAIMG--AI---------  205 (245)
T ss_pred             C--Ccc---hHHHHHHHHHHHHHHHHHhhHhC-eEEEEEEECcCcCchhccc----ChHH-HHHHhc--CC---------
Confidence            0  112   444443        22111  23 9999999997765321110    0000 000000  01         


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                          .+..+.++++++.++++++..+... ..|+.+++.++.
T Consensus       206 ----~~~~~~~~~~ia~~~~~l~~~~~~~-~~G~~~~~~~g~  242 (245)
T PRK12936        206 ----PMKRMGTGAEVASAVAYLASSEAAY-VTGQTIHVNGGM  242 (245)
T ss_pred             ----CCCCCcCHHHHHHHHHHHcCccccC-cCCCEEEECCCc
Confidence                1112457889999998877544321 345889888763

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.55  E-value=8.2e-13  Score=110.14  Aligned_cols=205  Identities=15%  Similarity=0.135  Sum_probs=125.1

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c-----cc--CCCeEEEEecCCCHHHHHHHHhcc-------Cc
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A-----IQ--SSSYCFISCDLLNPLDIKRKLTLL-------ED   95 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~-----~~--~~~~~~~~~D~~~~~~l~~~~~~~-------~~   95 (303)
                      |+|||++|+||++++++|+ +.|++|++++|+.... .     ..  ...++++.+|++|.+++.++++.+       |.
T Consensus         1 vlItG~~g~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLA-KEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5899999999999999999 6899999999876321 1     11  124778999999999888877653       66


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeeccc-ccccccCCCcccccCCcCcCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMK-HYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      |+|.++....    ........+.++.|+.++..+++.+....  ....+++++++.. .|+.+                
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~----------------  143 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA----------------  143 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC----------------
Confidence            8888765321    22334455688999999999999887641  2223455544421 22111                


Q ss_pred             CCCCCCccchHHHHHHHHH---------H-hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------K-LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~-~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                         +...   |+..|...+         . ..+ ++++++||+.+.++... ...  ..  ....+..  ..+       
T Consensus       144 ---~~~~---y~~~k~a~~~~~~~l~~~~~~~g-~~~~~i~pg~~~~~~~~-~~~--~~--~~~~~~~--~~~-------  202 (239)
T TIGR01830       144 ---GQAN---YAASKAGVIGFTKSLAKELASRN-ITVNAVAPGFIDTDMTD-KLS--EK--VKKKILS--QIP-------  202 (239)
T ss_pred             ---CCch---hHHHHHHHHHHHHHHHHHHhhcC-eEEEEEEECCCCChhhh-hcC--hH--HHHHHHh--cCC-------
Confidence               0112   555543222         1 123 89999999887663211 110  00  0001111  111       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                            +.-..+++|+|.++++++...... ..|++||+.++
T Consensus       203 ------~~~~~~~~~~a~~~~~~~~~~~~~-~~g~~~~~~~g  237 (239)
T TIGR01830       203 ------LGRFGTPEEVANAVAFLASDEASY-ITGQVIHVDGG  237 (239)
T ss_pred             ------cCCCcCHHHHHHHHHHHhCcccCC-cCCCEEEeCCC
Confidence                  111447789999888877543221 34589998765

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.55  E-value=7.9e-13  Score=109.46  Aligned_cols=195  Identities=15%  Similarity=0.148  Sum_probs=126.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc---CCCeEEEEecCCCHHHHHHHHhc----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ---SSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~---~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      .+++++++|||||+.||..+++.|. .+||+|+++.|+.++..     .+   .-.++++.+|+++++++..+.+.    
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLA-RRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence            4567899999999999999999999 79999999999987643     11   12467899999999988776653    


Q ss_pred             ---cCceeEEeecc----cccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 ---LEDVTHIFWVT----WASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ---~~~V~~~~~~~----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                         +|.+++.|+..    +...+..+..+++++|+.++..+-.++...  ..+--+++-++|...|..            
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p------------  149 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIP------------  149 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCC------------
Confidence               45566665543    234456666789999999988888777654  222334444444323211            


Q ss_pred             cCcCCCCCCCCc-cchHHHHHHH--------HHHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSN-NFYYVLEDLL--------KEKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~-~~~y~~~k~~--------~e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                                .| ...|+.+|..        .+...+. ++++.+.||.+...... .    ..          ......
T Consensus       150 ----------~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~-~----~~----------~~~~~~  204 (265)
T COG0300         150 ----------TPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFD-A----KG----------SDVYLL  204 (265)
T ss_pred             ----------CcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccc-c----cc----------cccccc
Confidence                      11 1226665543        3334444 99999999988873221 0    00          000111


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                      .+   ..      .+.+++++|+..+..+...+
T Consensus       205 ~~---~~------~~~~~~~va~~~~~~l~~~k  228 (265)
T COG0300         205 SP---GE------LVLSPEDVAEAALKALEKGK  228 (265)
T ss_pred             cc---hh------hccCHHHHHHHHHHHHhcCC
Confidence            11   11      25678889999998887754

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.55  E-value=6.9e-13  Score=112.20  Aligned_cols=219  Identities=13%  Similarity=0.137  Sum_probs=130.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      .+|+|+||||+|+||+++++.|+ +.|++|++++|+++...     .    ...++.++++|++|.+++.++++.     
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~-~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFA-REGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999 68999999999765432     1    123577899999999988877763     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        +|.++|.++....    ..+..+..+.+++|+.++..+++++....  ....+++.+++...+...            
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  152 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKII------------  152 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCC------------
Confidence              5668888764321    12234445688999999999988876541  122344444442121000            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccch-hhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNF-LGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +  ...+   |+.+|...+        ..... +++..++|+.+-.+........ ............  ..|   
T Consensus       153 ----~--~~~~---Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~--~~~---  218 (260)
T PRK07063        153 ----P--GCFP---YPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLA--LQP---  218 (260)
T ss_pred             ----C--CchH---HHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHh--cCC---
Confidence                0  0122   666555433        11222 9999999998865321100000 000000000000  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                +..+.+++|+|.++++++...... ..|+...+.++...
T Consensus       219 ----------~~r~~~~~~va~~~~fl~s~~~~~-itG~~i~vdgg~~~  256 (260)
T PRK07063        219 ----------MKRIGRPEEVAMTAVFLASDEAPF-INATCITIDGGRSV  256 (260)
T ss_pred             ----------CCCCCCHHHHHHHHHHHcCccccc-cCCcEEEECCCeee
Confidence                      112557889999999987654322 34577777766543

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.55  E-value=1.2e-12  Score=110.30  Aligned_cols=213  Identities=9%  Similarity=0.027  Sum_probs=129.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .+|++|||||+|+||++++++|+ +.|++|++++|++.+..     .  ...++..+.+|+.|.+++.+.++.       
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~-~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLA-EYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999 68999999999865432     1  123567788999999988877654       


Q ss_pred             cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      .|.|+|.++...    ......+..+.+++|+.++..+++++....  ....+++.+++....      .      +.  
T Consensus        87 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~------~------~~--  152 (254)
T PRK08085         87 IDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSE------L------GR--  152 (254)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhc------c------CC--
Confidence            466888876432    122334455689999999998888877641  222344444432111      0      00  


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          .+..+   |+.+|...+         +. .+ +++..++|+.+..+........ ..   +..... ...|     
T Consensus       153 ----~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~pG~~~t~~~~~~~~~-~~---~~~~~~-~~~p-----  214 (254)
T PRK08085        153 ----DTITP---YAASKGAVKMLTRGMCVELARHN-IQVNGIAPGYFKTEMTKALVED-EA---FTAWLC-KRTP-----  214 (254)
T ss_pred             ----CCCcc---hHHHHHHHHHHHHHHHHHHHhhC-eEEEEEEeCCCCCcchhhhccC-HH---HHHHHH-hcCC-----
Confidence                00122   555554333         12 23 9999999999987532111000 01   001000 0112     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              +..+.+.+|+|.++++++...... ..|+...+.++.
T Consensus       215 --------~~~~~~~~~va~~~~~l~~~~~~~-i~G~~i~~dgg~  250 (254)
T PRK08085        215 --------AARWGDPQELIGAAVFLSSKASDF-VNGHLLFVDGGM  250 (254)
T ss_pred             --------CCCCcCHHHHHHHHHHHhCccccC-CcCCEEEECCCe
Confidence                    112457789999888887643321 345666666654

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.55  E-value=1.7e-12  Score=109.28  Aligned_cols=213  Identities=12%  Similarity=0.078  Sum_probs=125.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec-CCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR-KPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|+++||||+|+||++++++|+ +.|++|+++.+ +.....       .....+..+.+|+.+.+++...++       
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLA-NDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            36899999999999999999999 68999988754 333211       112346678899999876654442       


Q ss_pred             ------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           92 ------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        92 ------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                            .+|.++|.++....    ........+.+++|+.++..+++++......-.+++.+++...+.           
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  150 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI-----------  150 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc-----------
Confidence                  35668888764321    122333445789999999999988776522223444444322210           


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                       +..      ...+   |+.+|...+         +. .+ +++..+.|+.|.++.......  ...  .....+ ..  
T Consensus       151 -~~~------~~~~---Y~~sKaa~~~~~~~la~e~~~~g-irvn~v~Pg~v~t~~~~~~~~--~~~--~~~~~~-~~--  212 (252)
T PRK12747        151 -SLP------DFIA---YSMTKGAINTMTFTLAKQLGARG-ITVNAILPGFIKTDMNAELLS--DPM--MKQYAT-TI--  212 (252)
T ss_pred             -CCC------Cchh---HHHHHHHHHHHHHHHHHHHhHcC-CEEEEEecCCccCchhhhccc--CHH--HHHHHH-hc--
Confidence             000      0123   776665543         11 23 999999999998742211100  000  000000 00  


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                 .....+.+++|+|.++++++..... ...|+.+.+.++.
T Consensus       213 -----------~~~~~~~~~~dva~~~~~l~s~~~~-~~~G~~i~vdgg~  250 (252)
T PRK12747        213 -----------SAFNRLGEVEDIADTAAFLASPDSR-WVTGQLIDVSGGS  250 (252)
T ss_pred             -----------CcccCCCCHHHHHHHHHHHcCcccc-CcCCcEEEecCCc
Confidence                       0111256889999999888754322 1345778777653

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.6e-12  Score=109.58  Aligned_cols=214  Identities=14%  Similarity=0.056  Sum_probs=127.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      ++|+++||||+|.||.+++++|+ +.|++|++++|++.+..     .  ...++.++.+|+.+.+++.++++       .
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFA-REGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            45899999999999999999999 68999999999865432     1  12357788999999998877766       3


Q ss_pred             cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.++|.++...     ...+..+..+.+++|+.++..+++++...  .....+++.+++...+..           +. 
T Consensus        84 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~-----------~~-  151 (254)
T PRK07478         84 LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA-----------GF-  151 (254)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc-----------CC-
Confidence            456888766421     12223444568899999888777665543  111223444443222200           00 


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +  ....   |+.+|...+         +. .+ +++.+++|+.+-.+....... .....  ..+..  ..+    
T Consensus       152 ---~--~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~~-~~~~~--~~~~~--~~~----  213 (254)
T PRK07478        152 ---P--GMAA---YAASKAGLIGLTQVLAAEYGAQG-IRVNALLPGGTDTPMGRAMGD-TPEAL--AFVAG--LHA----  213 (254)
T ss_pred             ---C--Ccch---hHHHHHHHHHHHHHHHHHHhhcC-EEEEEEeeCcccCcccccccC-CHHHH--HHHHh--cCC----
Confidence               0  0122   666665443         11 13 899999999987632111100 00100  00100  011    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               +..+..++++|.++++++..+... ..|+.+.+.++.
T Consensus       214 ---------~~~~~~~~~va~~~~~l~s~~~~~-~~G~~~~~dgg~  249 (254)
T PRK07478        214 ---------LKRMAQPEEIAQAALFLASDAASF-VTGTALLVDGGV  249 (254)
T ss_pred             ---------CCCCcCHHHHHHHHHHHcCchhcC-CCCCeEEeCCch
Confidence                     112457889999999988654322 345777776654

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.54  E-value=8.7e-13  Score=111.27  Aligned_cols=214  Identities=16%  Similarity=0.087  Sum_probs=126.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc-------cCce
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL-------LEDV   96 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V   96 (303)
                      +++++|+||||+|+||.+++++|+ +.|++|++++|++....  ....+..++++|+.+.+++++.++.       +|.|
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   83 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLA-AEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIA   83 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            456899999999999999999999 68999999999865432  1112236788999999998887764       3568


Q ss_pred             eEEeecccc------cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeeccc-ccccccCCCcccccCCcCcC
Q 042242           97 THIFWVTWA------SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMK-HYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        97 ~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~~~e~  167 (303)
                      +|+++....      ..+.....+.+++|+.++..+++.+...  .....+++.+++.. .++..               
T Consensus        84 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~---------------  148 (255)
T PRK06057         84 FNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA---------------  148 (255)
T ss_pred             EECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC---------------
Confidence            888654321      1223344568899999998888776542  11122444443321 12110               


Q ss_pred             CCCCCCCccchHHHHHHH-----HH----Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          168 CPRVSKSNNFYYVLEDLL-----KE----KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~-----~e----~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                         .+...   |+.+|..     ..    +. .+ +++++++|+.+.++.......  .....   ..+...   ..+  
T Consensus       149 ---~~~~~---Y~~sKaal~~~~~~l~~~~~~~g-i~v~~i~pg~v~t~~~~~~~~--~~~~~---~~~~~~---~~~--  211 (255)
T PRK06057        149 ---TSQIS---YTASKGGVLAMSRELGVQFARQG-IRVNALCPGPVNTPLLQELFA--KDPER---AARRLV---HVP--  211 (255)
T ss_pred             ---CCCcc---hHHHHHHHHHHHHHHHHHHHhhC-cEEEEEeeCCcCCchhhhhcc--CCHHH---HHHHHh---cCC--
Confidence               00122   6665532     21    22 23 999999999998753221100  00000   000000   011  


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                             ...+.+++++++++.+++...... ..|+.+.+.++
T Consensus       212 -------~~~~~~~~~~a~~~~~l~~~~~~~-~~g~~~~~~~g  246 (255)
T PRK06057        212 -------MGRFAEPEEIAAAVAFLASDDASF-ITASTFLVDGG  246 (255)
T ss_pred             -------CCCCcCHHHHHHHHHHHhCccccC-ccCcEEEECCC
Confidence                   113578899999988777654332 33567777655

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.54  E-value=1.3e-12  Score=109.45  Aligned_cols=210  Identities=14%  Similarity=0.156  Sum_probs=123.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe-cCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhcc-------
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIA-RKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTLL-------   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~-r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~~-------   93 (303)
                      ++++||||+|+||++++++|+ +.|++|+++. |++....     .  ...++.++.+|+.|.+++.++++.+       
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLA-QEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            689999999999999999999 6899988754 4433211     1  1235778999999999998887764       


Q ss_pred             CceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc-cC----CccEEEEeecccccccccCCCcccccCC
Q 042242           94 EDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR-AK----ALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        94 ~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~----~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                      |.|+|.++....     .....+....++.|+.++..+++++... ..    .-.+++.+++...+.+.          |
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------~  150 (247)
T PRK09730         81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------P  150 (247)
T ss_pred             CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC----------C
Confidence            458888664321     1123334457899999998888776543 11    11234554442222110          0


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            .. ..+   |+.+|...+         +. .+ ++++++||+.++++.......  ...  ......  ..|+.
T Consensus       151 ------~~-~~~---Y~~sK~~~~~~~~~l~~~~~~~~-i~v~~i~pg~~~~~~~~~~~~--~~~--~~~~~~--~~~~~  213 (247)
T PRK09730        151 ------GE-YVD---YAASKGAIDTLTTGLSLEVAAQG-IRVNCVRPGFIYTEMHASGGE--PGR--VDRVKS--NIPMQ  213 (247)
T ss_pred             ------Cc-ccc---hHhHHHHHHHHHHHHHHHHHHhC-eEEEEEEeCCCcCcccccCCC--HHH--HHHHHh--cCCCC
Confidence                  00 012   454443322         11 23 999999999999964321110  110  111111  11211


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                                   -..+.+|+|.++++++..+... ..|+.|++.++
T Consensus       214 -------------~~~~~~dva~~~~~~~~~~~~~-~~g~~~~~~g~  246 (247)
T PRK09730        214 -------------RGGQPEEVAQAIVWLLSDKASY-VTGSFIDLAGG  246 (247)
T ss_pred             -------------CCcCHHHHHHHHHhhcChhhcC-ccCcEEecCCC
Confidence                         1236788999998887654332 34577777664

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.54  E-value=3.3e-13  Score=112.79  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=102.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhcc----CceeEEee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTLL----EDVTHIFW  101 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~~----~~V~~~~~  101 (303)
                      ++++||||+|+||++++++|+ ..|++|++++|++....   ....++.++++|++|.++++++++..    ++++|.++
T Consensus         2 ~~vlItGas~giG~~la~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag   80 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYA-KQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG   80 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence            689999999999999999999 68999999999865432   11246888999999999999998875    33555543


Q ss_pred             cc-ccc---CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccc
Q 042242          102 VT-WAS---QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNF  177 (303)
Q Consensus       102 ~~-~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~  177 (303)
                      .. ...   .......+.+++|+.++.++++++.....+-.+++.+++....      +      +.    +  ...+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~------~------~~----~--~~~~--  140 (240)
T PRK06101         81 DCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE------L------AL----P--RAEA--  140 (240)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc------c------CC----C--CCch--
Confidence            22 111   2233344589999999999999988642111233333331111      0      00    0  0123  


Q ss_pred             hHHHHHHHHHH--------hcCC-cceEEecCCceeec
Q 042242          178 YYVLEDLLKEK--------LAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       178 ~y~~~k~~~e~--------~~~~-~~~~ilRp~~v~G~  206 (303)
                       |+.+|...+.        .... ++++++||+.++++
T Consensus       141 -Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~  177 (240)
T PRK06101        141 -YGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATP  177 (240)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCC
Confidence             6665554431        1222 99999999999884

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.54  E-value=1.5e-12  Score=108.49  Aligned_cols=208  Identities=12%  Similarity=0.014  Sum_probs=125.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      |+|++|||||+|.||++++++|+ ..|++|++++|++.+..  ....+++++.+|+.|.+++.+.++.       .|.++
T Consensus         1 ~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv   79 (236)
T PRK06483          1 MPAPILITGAGQRIGLALAWHLL-AQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAII   79 (236)
T ss_pred             CCceEEEECCCChHHHHHHHHHH-HCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEE
Confidence            56899999999999999999999 68999999999875422  1223577889999999888776654       45578


Q ss_pred             EEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC--ccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           98 HIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KA--LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        98 ~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~--~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      |.++....    .....+..+.+++|+.++..+...+....  ..  ...++.+++....            .+.    +
T Consensus        80 ~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~------------~~~----~  143 (236)
T PRK06483         80 HNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVE------------KGS----D  143 (236)
T ss_pred             ECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhc------------cCC----C
Confidence            87654211    11234445688999999888777766541  11  1234443321110            000    0


Q ss_pred             CCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                      .  ...   |+.+|...+         +..+ +++..++|+.+.-.. ...    ....  .....  ..++.       
T Consensus       144 ~--~~~---Y~asKaal~~l~~~~a~e~~~~-irvn~v~Pg~~~~~~-~~~----~~~~--~~~~~--~~~~~-------  201 (236)
T PRK06483        144 K--HIA---YAASKAALDNMTLSFAAKLAPE-VKVNSIAPALILFNE-GDD----AAYR--QKALA--KSLLK-------  201 (236)
T ss_pred             C--Ccc---HHHHHHHHHHHHHHHHHHHCCC-cEEEEEccCceecCC-CCC----HHHH--HHHhc--cCccc-------
Confidence            0  122   777666554         2223 899999999885321 111    0100  00110  11211       


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                            -....+|+|.++.+++....   ..|+.+.+.++..
T Consensus       202 ------~~~~~~~va~~~~~l~~~~~---~~G~~i~vdgg~~  234 (236)
T PRK06483        202 ------IEPGEEEIIDLVDYLLTSCY---VTGRSLPVDGGRH  234 (236)
T ss_pred             ------cCCCHHHHHHHHHHHhcCCC---cCCcEEEeCcccc
Confidence                  13467889999988886433   3458887877643

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.54  E-value=6.8e-13  Score=113.10  Aligned_cols=189  Identities=15%  Similarity=0.076  Sum_probs=118.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhc-------cCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTL-------LEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V   96 (303)
                      ++++|+||||||.||+.+++.|+ +.|++|++++|++.+..   .....+.++.+|+.|++++.++++.       +|.+
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   82 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALA-ALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVL   82 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46799999999999999999999 68999999999875432   1112478899999999987776654       3457


Q ss_pred             eEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           97 THIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        97 ~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      +|.++....    ........+.+++|+.++..+++.+...  ..+..+++.+|+...+.+.                + 
T Consensus        83 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------~-  145 (273)
T PRK07825         83 VNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV----------------P-  145 (273)
T ss_pred             EECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC----------------C-
Confidence            777654321    2233344568899999998888877654  1223355555442222100                0 


Q ss_pred             CCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          171 VSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                       ....   |..+|...+        ..... +++++++|+.+-.+...                   +.+    +     
T Consensus       146 -~~~~---Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~-------------------~~~----~-----  193 (273)
T PRK07825        146 -GMAT---YCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA-------------------GTG----G-----  193 (273)
T ss_pred             -CCcc---hHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc-------------------ccc----c-----
Confidence             0122   555554222        11122 99999999887542100                   000    0     


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                       .....+++++++|+.++.++.++.
T Consensus       194 -~~~~~~~~~~~va~~~~~~l~~~~  217 (273)
T PRK07825        194 -AKGFKNVEPEDVAAAIVGTVAKPR  217 (273)
T ss_pred             -ccCCCCCCHHHHHHHHHHHHhCCC
Confidence             011125688999999998887654

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-12  Score=108.75  Aligned_cols=213  Identities=13%  Similarity=0.069  Sum_probs=128.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+|+||||+|+||.+++++|+ +.|++|++++|++....     .  ....+.++++|+.+.+++.++++.      
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLA-QQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999 68999999999765421     0  123467889999999888776654      


Q ss_pred             -cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 -LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 -~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       +|.++|.++...     ...........++.|+.++..+++++.+.  .....+++.+++...+            .+.
T Consensus        85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~  152 (252)
T PRK07035         85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGV------------SPG  152 (252)
T ss_pred             CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhc------------CCC
Confidence             455777765321     12233444458899999999888887554  1223344444432111            000


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+..+   |+.+|...+     +    . .+ ++++.+.|+.+..+......   .....+.....  ..|   
T Consensus       153 ------~~~~~---Y~~sK~al~~~~~~l~~e~~~~g-i~v~~i~PG~v~t~~~~~~~---~~~~~~~~~~~--~~~---  214 (252)
T PRK07035        153 ------DFQGI---YSITKAAVISMTKAFAKECAPFG-IRVNALLPGLTDTKFASALF---KNDAILKQALA--HIP---  214 (252)
T ss_pred             ------CCCcc---hHHHHHHHHHHHHHHHHHHhhcC-EEEEEEeeccccCccccccc---CCHHHHHHHHc--cCC---
Confidence                  01223   666655544     1    1 23 99999999888653211110   00001111110  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                                ...+.+.+++|+++++++...... ..|+.+++.++
T Consensus       215 ----------~~~~~~~~~va~~~~~l~~~~~~~-~~g~~~~~dgg  249 (252)
T PRK07035        215 ----------LRRHAEPSEMAGAVLYLASDASSY-TTGECLNVDGG  249 (252)
T ss_pred             ----------CCCcCCHHHHHHHHHHHhCccccC-ccCCEEEeCCC
Confidence                      112457789999998887655332 34577777655

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.53  E-value=2.3e-12  Score=108.60  Aligned_cols=215  Identities=12%  Similarity=0.032  Sum_probs=128.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c-----c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A-----I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +.+|+++||||+|+||++++++|+ +.|++|++++|+.+.. .     .  ...++.++.+|+.|.+++.++++.     
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   84 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLA-QAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL   84 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            346899999999999999999999 6899999999976432 1     1  123577889999999988877765     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        .|.++|+++....    .....+..+.+++|+.++..+++++...  ..+..+++.+++...+.+.          + 
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------~-  153 (254)
T PRK06114         85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN----------R-  153 (254)
T ss_pred             CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC----------C-
Confidence              3568888664321    1223444568899999998888876543  1122244444432121100          0 


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                           ..+...   |..+|...+         .. .+ +++.+++|+.+.++..... .. ..  ......+  ..|   
T Consensus       154 -----~~~~~~---Y~~sKaa~~~l~~~la~e~~~~g-i~v~~v~PG~i~t~~~~~~-~~-~~--~~~~~~~--~~p---  215 (254)
T PRK06114        154 -----GLLQAH---YNASKAGVIHLSKSLAMEWVGRG-IRVNSISPGYTATPMNTRP-EM-VH--QTKLFEE--QTP---  215 (254)
T ss_pred             -----CCCcch---HHHHHHHHHHHHHHHHHHHhhcC-eEEEEEeecCccCcccccc-cc-hH--HHHHHHh--cCC---
Confidence                 000122   666555322         11 23 9999999999977422111 00 00  0001111  112   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                +..+.+++|+|.++++++..... ...|+++.+.++.
T Consensus       216 ----------~~r~~~~~dva~~~~~l~s~~~~-~~tG~~i~~dgg~  251 (254)
T PRK06114        216 ----------MQRMAKVDEMVGPAVFLLSDAAS-FCTGVDLLVDGGF  251 (254)
T ss_pred             ----------CCCCcCHHHHHHHHHHHcCcccc-CcCCceEEECcCE
Confidence                      11255788999999988754332 2456778777653

>PRK06196 oxidoreductase; Provisional

Probab=99.53  E-value=2.3e-13  Score=118.44  Aligned_cols=172  Identities=16%  Similarity=0.070  Sum_probs=106.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc---cCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI---QSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      +++|+|+||||+|+||++++++|+ ..|++|++++|++.+...   ...++.++.+|++|.++++++++.       +|.
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~  102 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDI  102 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCE
Confidence            356899999999999999999999 689999999998654321   123478899999999988777653       456


Q ss_pred             eeEEeeccccc--CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           96 VTHIFWVTWAS--QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        96 V~~~~~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      ++|.++.....  .........+++|+.++..+++.+...  .....+++.+|+...+...         .+..+.....
T Consensus       103 li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~---------~~~~~~~~~~  173 (315)
T PRK06196        103 LINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP---------IRWDDPHFTR  173 (315)
T ss_pred             EEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC---------CCccccCccC
Confidence            88887643211  112223347899999977777765543  1112345555443222111         0011100001


Q ss_pred             CCCccchHHHHHHHHHH--------hcCC-cceEEecCCceeecC
Q 042242          172 SKSNNFYYVLEDLLKEK--------LAGK-VAWSVHRPGLLLGSS  207 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~--------~~~~-~~~~ilRp~~v~G~~  207 (303)
                      +..+...|+.+|...+.        .... +++++++||.+.++.
T Consensus       174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~  218 (315)
T PRK06196        174 GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPL  218 (315)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCc
Confidence            11112237877775541        1223 999999999999853

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.53  E-value=2.8e-12  Score=108.18  Aligned_cols=216  Identities=14%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+|+||||+|+||++++++|+ ..|++|++++|+.....     .  ...++.++.+|++|.+++.++++.      
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~-~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   87 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG   87 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999999 68999999998765421     0  123577889999999988776654      


Q ss_pred             -cCceeEEeecccc---cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 -LEDVTHIFWVTWA---SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 -~~~V~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                       .|.++|+++....   ........+.+++|+.++.++++++....  ....+++.+++...+.                
T Consensus        88 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------  151 (255)
T PRK06113         88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN----------------  151 (255)
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC----------------
Confidence             3568888664221   22334444578999999999999987531  1112344443321110                


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                        +..+..+   |+.+|...+     ..   ... +++.++.|+.+..+.....   .... ......+  ..+      
T Consensus       152 --~~~~~~~---Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~---~~~~-~~~~~~~--~~~------  214 (255)
T PRK06113        152 --KNINMTS---YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPE-IEQKMLQ--HTP------  214 (255)
T ss_pred             --CCCCcch---hHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccc---cCHH-HHHHHHh--cCC------
Confidence              0001122   666555443     11   112 8899999998876321110   0010 0001111  111      


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                             +..+..++|++.++++++..... ...|+.+++.++...
T Consensus       215 -------~~~~~~~~d~a~~~~~l~~~~~~-~~~G~~i~~~gg~~~  252 (255)
T PRK06113        215 -------IRRLGQPQDIANAALFLCSPAAS-WVSGQILTVSGGGVQ  252 (255)
T ss_pred             -------CCCCcCHHHHHHHHHHHcCcccc-CccCCEEEECCCccc
Confidence                   11245778899999988754422 245688999887543

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.53  E-value=1.5e-12  Score=109.67  Aligned_cols=215  Identities=14%  Similarity=0.085  Sum_probs=129.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhcc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL------   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~------   93 (303)
                      .+|+|+||||+|+||++++++|+ +.|++|++++|++.+..       ....++.++.+|+.|.+++.++++.+      
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999 68999999999865421       11235788999999999888877654      


Q ss_pred             -CceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 -EDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 -~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       |.|+|.++...     ......+..+.+++|+.++..+++++...  .....+++..++...+...            .
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~------------~  152 (253)
T PRK06172         85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAA------------P  152 (253)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------C
Confidence             66888866432     12234455567899999998777765432  1112344554443222110            0


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                            ....   |+.+|...+     +   .... +++..+.|+.+-.+............  ......  ..|     
T Consensus       153 ------~~~~---Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~--~~~~~~--~~~-----  214 (253)
T PRK06172        153 ------KMSI---YAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRK--AEFAAA--MHP-----  214 (253)
T ss_pred             ------CCch---hHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHH--HHHHhc--cCC-----
Confidence                  0122   665555333     1   1122 99999999988653211100000000  000000  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              ...+.+.++++..+++++...... ..|+.+++.++.
T Consensus       215 --------~~~~~~p~~ia~~~~~l~~~~~~~-~~G~~i~~dgg~  250 (253)
T PRK06172        215 --------VGRIGKVEEVASAVLYLCSDGASF-TTGHALMVDGGA  250 (253)
T ss_pred             --------CCCccCHHHHHHHHHHHhCccccC-cCCcEEEECCCc
Confidence                    112557899999999988765332 446788887764

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.53  E-value=1.4e-12  Score=109.77  Aligned_cols=208  Identities=12%  Similarity=0.082  Sum_probs=126.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .+++++|||++|+||..+++.|+ +.|++|++++|++.+..       ....++..+++|+.+.+++.++++.       
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~-~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLA-QKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999 68999999999865421       1123577889999999887776654       


Q ss_pred             cCceeEEeeccc-------------ccCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCC
Q 042242           93 LEDVTHIFWVTW-------------ASQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLP  156 (303)
Q Consensus        93 ~~~V~~~~~~~~-------------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~  156 (303)
                      .|.|+|+++...             ...+.......++.|+.++..+..++....   ..-..++.+++...|+..    
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~----  158 (253)
T PRK08217         83 LNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM----  158 (253)
T ss_pred             CCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC----
Confidence            356888865422             111233444578899999987776555431   111233333332222110    


Q ss_pred             cccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhh
Q 042242          157 EEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCK  226 (303)
Q Consensus       157 g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  226 (303)
                                     +..+   |+.+|...+         .. .+ ++++.++|+.+.++.....   .....  .....
T Consensus       159 ---------------~~~~---Y~~sK~a~~~l~~~la~~~~~~~-i~v~~v~pg~v~t~~~~~~---~~~~~--~~~~~  214 (253)
T PRK08217        159 ---------------GQTN---YSASKAGVAAMTVTWAKELARYG-IRVAAIAPGVIETEMTAAM---KPEAL--ERLEK  214 (253)
T ss_pred             ---------------CCch---hHHHHHHHHHHHHHHHHHHHHcC-cEEEEEeeCCCcCcccccc---CHHHH--HHHHh
Confidence                           1223   666654333         11 23 9999999999987432111   01110  00100


Q ss_pred             hCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          227 HLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                        ..+             +..+.+++++|+++.+++....   ..|++|++.++.
T Consensus       215 --~~~-------------~~~~~~~~~~a~~~~~l~~~~~---~~g~~~~~~gg~  251 (253)
T PRK08217        215 --MIP-------------VGRLGEPEEIAHTVRFIIENDY---VTGRVLEIDGGL  251 (253)
T ss_pred             --cCC-------------cCCCcCHHHHHHHHHHHHcCCC---cCCcEEEeCCCc
Confidence              111             1124577899999999886543   345899998864

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.53  E-value=2.6e-12  Score=109.29  Aligned_cols=156  Identities=15%  Similarity=0.120  Sum_probs=101.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      |+|+||||+|+||+.++++|+ +.|++|++++|+..+..       ....++.++++|+.|.+++.++++       ..|
T Consensus         1 ~~vlVtGasggIG~~la~~l~-~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWA-REGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            479999999999999999999 68999999999865422       113467889999999998877775       356


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.++....    .....+..+.+++|+.++..+.+.+...  .....+++.+++...+...            .   
T Consensus        80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------~---  144 (270)
T PRK05650         80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG------------P---  144 (270)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC------------C---
Confidence            68888665322    1223344457889988888777765433  1123355555443222110            0   


Q ss_pred             CCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeec
Q 042242          169 PRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~  206 (303)
                         ....   |+.+|...+        ..... +++++++|+.+..+
T Consensus       145 ---~~~~---Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~  185 (270)
T PRK05650        145 ---AMSS---YNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTN  185 (270)
T ss_pred             ---CchH---HHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccC
Confidence               0122   666555322        11122 89999999999874

>PRK09242 tropinone reductase; Provisional

Probab=99.53  E-value=1.9e-12  Score=109.27  Aligned_cols=213  Identities=14%  Similarity=0.074  Sum_probs=128.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--c--CCCeEEEEecCCCHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--Q--SSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~--~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      +.+|+++||||+|.||+.+++.|. +.|++|++++|+.+...     .  .  ..++.++.+|+.+.+++.++++.    
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFL-GLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH   85 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999 68999999999865421     0  1  23577889999999887666653    


Q ss_pred             ---cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 ---LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ---~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                         +|.|+|+++...    ......+....+.+|+.++..+++++...  .....+++.+++...+...           
T Consensus        86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~-----------  154 (257)
T PRK09242         86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV-----------  154 (257)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC-----------
Confidence               455888876421    12234455568899999999998887653  1122344454442222110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                       .      +...   |+.+|...+         .. .+ ++++.++|+.+.++........ ..  .......  ..|  
T Consensus       155 -~------~~~~---Y~~sK~a~~~~~~~la~e~~~~~-i~v~~i~Pg~i~t~~~~~~~~~-~~--~~~~~~~--~~~--  216 (257)
T PRK09242        155 -R------SGAP---YGMTKAALLQMTRNLAVEWAEDG-IRVNAVAPWYIRTPLTSGPLSD-PD--YYEQVIE--RTP--  216 (257)
T ss_pred             -C------CCcc---hHHHHHHHHHHHHHHHHHHHHhC-eEEEEEEECCCCCcccccccCC-hH--HHHHHHh--cCC--
Confidence             0      0122   555443332         11 23 9999999999987532211110 00  0000000  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                                 +..+.+.++++.++.+++...... ..|+.+.+.++
T Consensus       217 -----------~~~~~~~~~va~~~~~l~~~~~~~-~~g~~i~~~gg  251 (257)
T PRK09242        217 -----------MRRVGEPEEVAAAVAFLCMPAASY-ITGQCIAVDGG  251 (257)
T ss_pred             -----------CCCCcCHHHHHHHHHHHhCccccc-ccCCEEEECCC
Confidence                       122457788899988887543221 23577777654

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.53  E-value=4.2e-13  Score=113.55  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhcc--------Cc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTLL--------ED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~--------~~   95 (303)
                      |+++||||+|+||+.++++|+ +.|++|++++|++....     ....+++++++|+.|.+++.+.++.+        |.
T Consensus         2 k~vlItGasg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFA-AEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            689999999999999999999 68999999999876432     11246889999999999888776543        56


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      |+|+++....    ..+..+..+.+++|+.++..+++++...
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  122 (260)
T PRK08267         81 LFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPY  122 (260)
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            8888765321    2233445568999999999999888653

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.52  E-value=2.7e-12  Score=108.12  Aligned_cols=214  Identities=11%  Similarity=0.046  Sum_probs=127.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +|+++||||+|.||+++++.|+ +.|++|++++|+.....     .  ...++.++++|++|+++++++++.       .
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFA-EEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            3789999999999999999999 68999999999865432     1  124678899999999988776654       4


Q ss_pred             CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--c-CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           94 EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--A-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        94 ~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      |.++|+++...    ...+.....+.+++|+.++.++++++.+.  . ....+++.+++...+...              
T Consensus        80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------------  145 (252)
T PRK07677         80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG--------------  145 (252)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC--------------
Confidence            55888865422    12234444568999999999999998653  1 112345555442111000              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                        +.  ..+   |+.+|...+         +.... +++..++||.+.+...  .......-.....+.+  ..+     
T Consensus       146 --~~--~~~---Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~--~~~~~~~~~~~~~~~~--~~~-----  209 (252)
T PRK07677        146 --PG--VIH---SAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGG--ADKLWESEEAAKRTIQ--SVP-----  209 (252)
T ss_pred             --CC--Ccc---hHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccc--cccccCCHHHHHHHhc--cCC-----
Confidence              00  112   454443322         22222 9999999999985211  1000000000011111  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              +..+.+.+|+|.++.+++..... ...|+.+.+.++.
T Consensus       210 --------~~~~~~~~~va~~~~~l~~~~~~-~~~g~~~~~~gg~  245 (252)
T PRK07677        210 --------LGRLGTPEEIAGLAYFLLSDEAA-YINGTCITMDGGQ  245 (252)
T ss_pred             --------CCCCCCHHHHHHHHHHHcCcccc-ccCCCEEEECCCe
Confidence                    11255778889888887654322 1445777777654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.52  E-value=2.9e-12  Score=108.11  Aligned_cols=213  Identities=12%  Similarity=0.064  Sum_probs=127.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhcc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL-----   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~-----   93 (303)
                      ..+|+|+||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|+.+.+++.++++.+     
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALA-GAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            457899999999999999999999 68999999999865421       11235788999999999888777643     


Q ss_pred             --CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 --EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 --~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        |.++|.++....    .....+..+.+++|+.++..+.+.+.+.  .....+++.+++...+..            ..
T Consensus        88 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~  155 (256)
T PRK06124         88 RLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVA------------RA  155 (256)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccC------------CC
Confidence              457777654321    2223344457899999999998777653  112233444333211100            00


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                      .      ..+   |+.+|...+         .. .+ +++..++|+.+.++....... .....  ..+.+  ..+    
T Consensus       156 ~------~~~---Y~~sK~a~~~~~~~la~e~~~~~-i~v~~i~pg~v~t~~~~~~~~-~~~~~--~~~~~--~~~----  216 (256)
T PRK06124        156 G------DAV---YPAAKQGLTGLMRALAAEFGPHG-ITSNAIAPGYFATETNAAMAA-DPAVG--PWLAQ--RTP----  216 (256)
T ss_pred             C------ccH---hHHHHHHHHHHHHHHHHHHHHhC-cEEEEEEECCccCcchhhhcc-ChHHH--HHHHh--cCC----
Confidence            0      112   444433322         22 23 999999999999853111100 00100  00111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                               ...+.++++++.++++++..+... ..|+.+.+.++
T Consensus       217 ---------~~~~~~~~~~a~~~~~l~~~~~~~-~~G~~i~~dgg  251 (256)
T PRK06124        217 ---------LGRWGRPEEIAGAAVFLASPAASY-VNGHVLAVDGG  251 (256)
T ss_pred             ---------CCCCCCHHHHHHHHHHHcCcccCC-cCCCEEEECCC
Confidence                     112567889999999988765322 34566666554

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.52  E-value=3.6e-13  Score=114.89  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhc-------cCceeEEe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTL-------LEDVTHIF  100 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~~~~  100 (303)
                      |+++||||+|+||++++++|+ ..|++|++++|+..+.. ....+++++.+|+.+.+++.++++.       +|.|+|.+
T Consensus         2 k~vlItGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFK-AAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            689999999999999999998 68999999999865432 2224577889999999988777653       46688887


Q ss_pred             eccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          101 WVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       101 ~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +...    ...+..+..+.+++|+.++..+++++...
T Consensus        81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~  117 (274)
T PRK05693         81 GYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPL  117 (274)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            6432    22234455568899999999999887653

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.51  E-value=2.4e-12  Score=109.15  Aligned_cols=215  Identities=13%  Similarity=0.100  Sum_probs=127.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .++++++||||+|+||+++++.|+ ..|++|++++|++....     .  ...++.++.+|+++.+++.++++.      
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFA-RAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999 68999999999865421     1  123567889999999988887765      


Q ss_pred             -cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 -LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 -~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                       +|.++|+++...    ...+..+..+.+++|+.++.++++++.... .+-.+++.+++...+.            +.  
T Consensus        86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~------------~~--  151 (264)
T PRK07576         86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV------------PM--  151 (264)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc------------CC--
Confidence             355778764321    222334444578899999999999887541 1112444444321110            00  


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                        +.  ...   |..+|...+     .    . .+ ++++.++|+.+.+... .. ...... .+..... ...|     
T Consensus       152 --~~--~~~---Y~asK~a~~~l~~~la~e~~~~g-i~v~~v~pg~~~~t~~-~~-~~~~~~-~~~~~~~-~~~~-----  214 (264)
T PRK07576        152 --PM--QAH---VCAAKAGVDMLTRTLALEWGPEG-IRVNSIVPGPIAGTEG-MA-RLAPSP-ELQAAVA-QSVP-----  214 (264)
T ss_pred             --CC--ccH---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEecccccCcHH-Hh-hcccCH-HHHHHHH-hcCC-----
Confidence              00  122   666554433     1    1 23 8999999998875210 00 000000 0000000 0111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              +....+.+|+|..+++++..+... ..|..+.+.++.
T Consensus       215 --------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~~~gg~  250 (264)
T PRK07576        215 --------LKRNGTKQDIANAALFLASDMASY-ITGVVLPVDGGW  250 (264)
T ss_pred             --------CCCCCCHHHHHHHHHHHcChhhcC-ccCCEEEECCCc
Confidence                    112456789999999888654321 345666666653

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.51  E-value=1.9e-12  Score=108.68  Aligned_cols=158  Identities=14%  Similarity=0.075  Sum_probs=102.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      |+++++||||+|+||++++++|+ +.|++|++++|++....       .  ...+++++++|++|.+++.++++.     
T Consensus         1 ~~k~vlItGas~giG~~la~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (248)
T PRK08251          1 TRQKILITGASSGLGAGMAREFA-AKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL   79 (248)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999 67899999999875432       0  123578899999999988776653     


Q ss_pred             --cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        +|.++|.++.....    .......+.+++|+.+...+++++...  ..+..+++.+++...+.+.          + 
T Consensus        80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~-  148 (248)
T PRK08251         80 GGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL----------P-  148 (248)
T ss_pred             CCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC----------C-
Confidence              45577776543221    123334457899999999888887543  1123344444432121000          0 


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLG  205 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G  205 (303)
                            .+...   |+.+|...+     +.   ... +++++++|+.+.+
T Consensus       149 ------~~~~~---Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t  189 (248)
T PRK08251        149 ------GVKAA---YAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRS  189 (248)
T ss_pred             ------CCccc---HHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcc
Confidence                  00123   676665433     11   122 8999999998876

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.51  E-value=1.8e-12  Score=113.55  Aligned_cols=195  Identities=17%  Similarity=0.134  Sum_probs=120.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +.+++|+||||+|+||++++++|+ +.|++|++++|++....     .  ...++.++.+|++|.++++++++       
T Consensus         6 l~~k~vlITGas~gIG~~la~~la-~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFA-RRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            346899999999999999999999 68999999999865432     1  12357788999999998887765       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.++....    .....+....+++|+.+...+...+....  ....+++.+++...|...             
T Consensus        85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~-------------  151 (334)
T PRK07109         85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSI-------------  151 (334)
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCC-------------
Confidence            35667887654321    22334445678899888777666655431  112344444443233110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                         +.  ..+   |..+|...+         ... +. +++++++|+.+..+.....    ..     ...   ..+   
T Consensus       152 ---~~--~~~---Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~----~~-----~~~---~~~---  208 (334)
T PRK07109        152 ---PL--QSA---YCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWA----RS-----RLP---VEP---  208 (334)
T ss_pred             ---Cc--chH---HHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhh----hh-----hcc---ccc---
Confidence               00  223   666665432         222 23 9999999998876311100    00     000   000   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                              .....+.+.+++|+++++++.++
T Consensus       209 --------~~~~~~~~pe~vA~~i~~~~~~~  231 (334)
T PRK07109        209 --------QPVPPIYQPEVVADAILYAAEHP  231 (334)
T ss_pred             --------cCCCCCCCHHHHHHHHHHHHhCC
Confidence                    11122568899999999998775

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.51  E-value=3.2e-12  Score=109.24  Aligned_cols=216  Identities=15%  Similarity=0.138  Sum_probs=126.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      .+|+++||||+|+||++++++|+ +.|++|++++|+.....     .  ...++.++++|+.|.+++..+++       .
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELA-RAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999 68999999999864321     1  12357788999999988877665       3


Q ss_pred             cCceeEEeecccc-------------------cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeeccccccc
Q 042242           93 LEDVTHIFWVTWA-------------------SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVS  151 (303)
Q Consensus        93 ~~~V~~~~~~~~~-------------------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~  151 (303)
                      +|.++|+++....                   .....+..+.+++|+.++..++.++...  ..+..+++.+++...|..
T Consensus        88 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~  167 (278)
T PRK08277         88 CDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFTP  167 (278)
T ss_pred             CCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcCC
Confidence            5668888663221                   1123344557899999988776665543  111234444443222211


Q ss_pred             ccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchh-hHHHHH
Q 042242          152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFL-GCLCVY  221 (303)
Q Consensus       152 ~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~  221 (303)
                                  .      .+...   |+.+|...+     +   .... +++..++|+.+..+......... ......
T Consensus       168 ------------~------~~~~~---Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~  226 (278)
T PRK08277        168 ------------L------TKVPA---YSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTER  226 (278)
T ss_pred             ------------C------CCCch---hHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhH
Confidence                        0      00122   666555433     1   1122 99999999999885321100000 000000


Q ss_pred             -HHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcC-cCCcCCCCceEEeecC
Q 042242          222 -GAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN-DDISSTKGQAFNAING  280 (303)
Q Consensus       222 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~-~~~~~~~g~~yni~~~  280 (303)
                       ..+..  ..|             ...+.+.+|+|.++++++.. ... ...|+.+.+.++
T Consensus       227 ~~~~~~--~~p-------------~~r~~~~~dva~~~~~l~s~~~~~-~~tG~~i~vdgG  271 (278)
T PRK08277        227 ANKILA--HTP-------------MGRFGKPEELLGTLLWLADEKASS-FVTGVVLPVDGG  271 (278)
T ss_pred             HHHHhc--cCC-------------ccCCCCHHHHHHHHHHHcCccccC-CcCCCEEEECCC
Confidence             00000  111             11255788999999998765 322 234577777666

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.51  E-value=2e-12  Score=109.28  Aligned_cols=219  Identities=13%  Similarity=0.054  Sum_probs=131.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+|+||||+|+||+.++++|+ ..|++ |++++|++.+..     .  ...++.++.+|+.+.+++.++++.     
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~-~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFA-ERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHH-HCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            456899999999999999999999 68899 999999764322     1  123567789999999988877764     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-C--CccEEEEeecccccccccCCCcccccCC
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA-K--ALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~--~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        +|.++|+++....    ..........++.|+.++.++++++.+.. .  ...+++.+++...|++.           
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-----------  151 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-----------  151 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC-----------
Confidence              4668888765321    22333344578999999999988886541 1  12345554443233111           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCc-cchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSL-YNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                           +.  ..+   |+.+|...+     ..   ... ++++.++|+.++++..... ..+......+..... ..    
T Consensus       152 -----~~--~~~---Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~-~~----  216 (260)
T PRK06198        152 -----PF--LAA---YCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAA-AT----  216 (260)
T ss_pred             -----CC--cch---hHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHh-cc----
Confidence                 00  223   666555443     11   122 8999999999988532110 000000000000000 00    


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               ..+..+.+++++++++++++..... ...|+.|++.++.
T Consensus       217 ---------~~~~~~~~~~~~a~~~~~l~~~~~~-~~~G~~~~~~~~~  254 (260)
T PRK06198        217 ---------QPFGRLLDPDEVARAVAFLLSDESG-LMTGSVIDFDQSV  254 (260)
T ss_pred             ---------CCccCCcCHHHHHHHHHHHcChhhC-CccCceEeECCcc
Confidence                     1112256889999999988754432 1345788777653

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.51  E-value=1.2e-12  Score=109.80  Aligned_cols=213  Identities=15%  Similarity=0.141  Sum_probs=122.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-cc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-TA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      |+|+|+||||+|+||+.+++.|+ +.|++|+++.++... ..     .  ...++..+++|+.+.+++.++++.      
T Consensus         1 m~k~ilItGas~giG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06947          1 MRKVVLITGASRGIGRATAVLAA-ARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG   79 (248)
T ss_pred             CCcEEEEeCCCCcHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            56899999999999999999999 689998776644322 11     1  123678899999999888776653      


Q ss_pred             -cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc-c-CC---ccEEEEeecccccccccCCCccccc
Q 042242           93 -LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR-A-KA---LKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 -~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~-~~---~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                       +|.++|+++....     .....+....+++|+.++..++..+... . .+   -.+++.+++...+.+.         
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~---------  150 (248)
T PRK06947         80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS---------  150 (248)
T ss_pred             CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC---------
Confidence             4568888764321     1223333457899999988887655443 1 11   1234444432111000         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                       +     ..  ..+   |+.+|...+     .   .... ++++++||+.+..+.......  ...  .....  ...| 
T Consensus       151 -~-----~~--~~~---Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~--~~~~~--~~~~-  212 (248)
T PRK06947        151 -P-----NE--YVD---YAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ--PGR--AARLG--AQTP-  212 (248)
T ss_pred             -C-----CC--Ccc---cHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC--HHH--HHHHh--hcCC-
Confidence             0     00  112   555554433     1   1112 999999999998753211000  010  00000  0111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                         .         ....+++++|..+++++..+... ..|+.+.+.++
T Consensus       213 ---~---------~~~~~~e~va~~~~~l~~~~~~~-~~G~~~~~~gg  247 (248)
T PRK06947        213 ---L---------GRAGEADEVAETIVWLLSDAASY-VTGALLDVGGG  247 (248)
T ss_pred             ---C---------CCCcCHHHHHHHHHHHcCccccC-cCCceEeeCCC
Confidence               1         11457899999999987765422 34576766554

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.51  E-value=3.4e-12  Score=107.55  Aligned_cols=213  Identities=14%  Similarity=0.079  Sum_probs=128.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +.+|+++||||+|.||++++++|+ +.|++|++++|+.....       ....++..+.+|+.|.+++.++++       
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYV-EAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            356899999999999999999999 68999999999765421       112357788999999998877765       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-CC--ccEEEEeecccccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA-KA--LKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~--~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .+|.++|.++....    ........+.+++|+.++..+++++.... .+  -..++.+++...+..         .  .
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---------~--~  154 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII---------N--V  154 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC---------C--C
Confidence            45568888654322    12233444578999999999998876541 11  123333332111100         0  0


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +. ....   |+.+|...+         +. .+ +++..++||.+-.+.....    ...  .....+  ..|.  
T Consensus       155 ----~~-~~~~---Y~asKaal~~~~~~la~e~~~~g-I~vn~i~PG~v~t~~~~~~----~~~--~~~~~~--~~~~--  215 (253)
T PRK05867        155 ----PQ-QVSH---YCASKAAVIHLTKAMAVELAPHK-IRVNSVSPGYILTELVEPY----TEY--QPLWEP--KIPL--  215 (253)
T ss_pred             ----CC-Cccc---hHHHHHHHHHHHHHHHHHHhHhC-eEEEEeecCCCCCcccccc----hHH--HHHHHh--cCCC--
Confidence                00 0112   666554333         22 23 9999999999866321110    110  001111  1121  


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                       +          .+..++++|.++++++..... ...|+.+.+.++.
T Consensus       216 -~----------r~~~p~~va~~~~~L~s~~~~-~~tG~~i~vdgG~  250 (253)
T PRK05867        216 -G----------RLGRPEELAGLYLYLASEASS-YMTGSDIVIDGGY  250 (253)
T ss_pred             -C----------CCcCHHHHHHHHHHHcCcccC-CcCCCeEEECCCc
Confidence             1          255788999999988764332 2446788777764

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.51  E-value=3.7e-12  Score=107.19  Aligned_cols=213  Identities=14%  Similarity=0.124  Sum_probs=128.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +.+|+++||||+|.||++++++|+ +.|++|++++|+.....     ....++.++.+|++|.++++++++.       .
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~-~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLA-KAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            346899999999999999999999 68999999988653211     1124578899999999988887764       4


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      |.++|.++....    .....+..+.+++|+.++..+++++....   ..-.+++.+++...+.+.              
T Consensus        85 D~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------------  150 (251)
T PRK12481         85 DILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG--------------  150 (251)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC--------------
Confidence            567787654321    12334455688999999988888876541   111344444443222110              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                        +.  ...   |+.+|...+         .. .+ +++..++||.+-.+....... ...  ....+..  ..|    .
T Consensus       151 --~~--~~~---Y~asK~a~~~l~~~la~e~~~~g-irvn~v~PG~v~t~~~~~~~~-~~~--~~~~~~~--~~p----~  213 (251)
T PRK12481        151 --IR--VPS---YTASKSAVMGLTRALATELSQYN-INVNAIAPGYMATDNTAALRA-DTA--RNEAILE--RIP----A  213 (251)
T ss_pred             --CC--Ccc---hHHHHHHHHHHHHHHHHHHhhcC-eEEEEEecCCCccCchhhccc-ChH--HHHHHHh--cCC----C
Confidence              00  112   666554433         11 23 999999999886632111000 000  0000110  111    1


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                               -.+..++|+|.++++++...... ..|+.+.+.++
T Consensus       214 ---------~~~~~peeva~~~~~L~s~~~~~-~~G~~i~vdgg  247 (251)
T PRK12481        214 ---------SRWGTPDDLAGPAIFLSSSASDY-VTGYTLAVDGG  247 (251)
T ss_pred             ---------CCCcCHHHHHHHHHHHhCccccC-cCCceEEECCC
Confidence                     12457889999999987643322 34577767665

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.50  E-value=2.9e-12  Score=108.77  Aligned_cols=218  Identities=12%  Similarity=0.097  Sum_probs=130.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +.+|+++||||+|.||++++++|+ ..|++|++++|++.+..     .  ...++.++++|++|.++++++++.      
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~-~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYA-KAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            346899999999999999999999 68999999998765431     1  123578899999999998887764      


Q ss_pred             -cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       .|.++|+++....    ........+.+++|+.++..++.++...  .....+++.+++....      ++      . 
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------~~------~-  153 (265)
T PRK07097         87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSE------LG------R-  153 (265)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCcccc------CC------C-
Confidence             4568888765322    2234455567889999988888877653  1122334443331110      00      0 


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchh--hHHHHHHH-HhhhCCCcee
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFL--GCLCVYGA-VCKHLNLPFV  233 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~  233 (303)
                           .+..+   |+.+|...+     +   .... ++++.++|+.+..+.........  .....+.. +..  ..|  
T Consensus       154 -----~~~~~---Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~~--  221 (265)
T PRK07097        154 -----ETVSA---YAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIA--KTP--  221 (265)
T ss_pred             -----CCCcc---HHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHh--cCC--
Confidence                 00222   666555433     1   1122 99999999999875321110000  00000000 000  011  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                 ...+.+.+|+|..+++++...... ..|+.+.+.++.
T Consensus       222 -----------~~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~gg~  257 (265)
T PRK07097        222 -----------AARWGDPEDLAGPAVFLASDASNF-VNGHILYVDGGI  257 (265)
T ss_pred             -----------ccCCcCHHHHHHHHHHHhCcccCC-CCCCEEEECCCc
Confidence                       112557789999999988764321 345777777664

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.49  E-value=2.9e-12  Score=108.15  Aligned_cols=209  Identities=15%  Similarity=0.061  Sum_probs=125.8

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCccc---------------c---ccCCCeEEEEecCCCHHH
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEIT---------------A---IQSSSYCFISCDLLNPLD   85 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~---------------~---~~~~~~~~~~~D~~~~~~   85 (303)
                      +++|+||||||+|  .||..++++|+ ..|++|++++|++.+.               .   ....+++++.+|+++.++
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~-~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   81 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLA-AKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA   81 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHH-HcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            3568999999996  69999999999 6899999999873211               0   012357889999999998


Q ss_pred             HHHHHhc-------cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc-c-CCccEEEEeecccccccc
Q 042242           86 IKRKLTL-------LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR-A-KALKHVSLQTGMKHYVSL  152 (303)
Q Consensus        86 l~~~~~~-------~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~-~~~~~~~~~s~~~~y~~~  152 (303)
                      +...++.       .|.|+|+++....    .....+..+.+++|+.++..+++++... . ....+++.+++...+.  
T Consensus        82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--  159 (256)
T PRK12748         82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG--  159 (256)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC--
Confidence            8776654       3558888654211    1233445567899999999999988654 1 1123455544422221  


Q ss_pred             cCCCcccccCCcCcCCCCCCCCccchHHHHHHHHHH---------h-cCCcceEEecCCceeecCCCCccchhhHHHHHH
Q 042242          153 QGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEK---------L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYG  222 (303)
Q Consensus       153 ~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e~---------~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  222 (303)
                                |...      ...   |+.+|...+.         . .+ ++++.++|+.+..+..  .    .....  
T Consensus       160 ----------~~~~------~~~---Y~~sK~a~~~~~~~la~e~~~~~-i~v~~i~Pg~~~t~~~--~----~~~~~--  211 (256)
T PRK12748        160 ----------PMPD------ELA---YAATKGAIEAFTKSLAPELAEKG-ITVNAVNPGPTDTGWI--T----EELKH--  211 (256)
T ss_pred             ----------CCCC------chH---HHHHHHHHHHHHHHHHHHHHHhC-eEEEEEEeCcccCCCC--C----hhHHH--
Confidence                      1100      122   6666554441         1 23 9999999988765311  1    01000  


Q ss_pred             HHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          223 AVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       223 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ...     . ..+.         ..+...+++|.++.+++..... +..|..+++.++.
T Consensus       212 ~~~-----~-~~~~---------~~~~~~~~~a~~~~~l~~~~~~-~~~g~~~~~d~g~  254 (256)
T PRK12748        212 HLV-----P-KFPQ---------GRVGEPVDAARLIAFLVSEEAK-WITGQVIHSEGGF  254 (256)
T ss_pred             hhh-----c-cCCC---------CCCcCHHHHHHHHHHHhCcccc-cccCCEEEecCCc
Confidence            000     0 0111         1134568889888877655322 1345788887653

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.49  E-value=3.7e-12  Score=106.42  Aligned_cols=209  Identities=11%  Similarity=0.124  Sum_probs=123.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c-------ccCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A-------IQSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      |++|||||+|+||++++++|+ +.|++|+++.|+.... .       ....++.++.+|+.|.+++.++++.       +
T Consensus         1 k~~lItG~sg~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLA-KDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            589999999999999999999 6899999998843221 1       1123678899999999888776653       4


Q ss_pred             CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.|+|+++...    ......+..+.++.|+.++..+++.+...  .....+++.+++...+.+            ..  
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~------------~~--  145 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKG------------QF--  145 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCC------------CC--
Confidence            56888865432    12233444567899999988876665443  112234444443211100            00  


Q ss_pred             CCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                          ....   |..+|...+         .. .+ ++++.++|+.+.++.....   .....  .....  ..+      
T Consensus       146 ----~~~~---y~~sk~a~~~~~~~la~~~~~~~-i~v~~i~pg~~~t~~~~~~---~~~~~--~~~~~--~~~------  204 (242)
T TIGR01829       146 ----GQTN---YSAAKAGMIGFTKALAQEGATKG-VTVNTISPGYIATDMVMAM---REDVL--NSIVA--QIP------  204 (242)
T ss_pred             ----Ccch---hHHHHHHHHHHHHHHHHHhhhhC-eEEEEEeeCCCcCcccccc---chHHH--HHHHh--cCC------
Confidence                0112   555554221         11 23 9999999999987432211   01110  00111  111      


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                             +..+...++++.++.+++.++.. ...|+.+.+.++.
T Consensus       205 -------~~~~~~~~~~a~~~~~l~~~~~~-~~~G~~~~~~gg~  240 (242)
T TIGR01829       205 -------VGRLGRPEEIAAAVAFLASEEAG-YITGATLSINGGL  240 (242)
T ss_pred             -------CCCCcCHHHHHHHHHHHcCchhc-CccCCEEEecCCc
Confidence                   11234667888888777655432 1346888888774

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK08589 short chain dehydrogenase; Validated

Probab=99.49  E-value=3.2e-12  Score=108.90  Aligned_cols=219  Identities=14%  Similarity=0.042  Sum_probs=127.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|+ ....     .  ...++.++.+|+.+.+++..+++.      
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999 689999999998 3321     1  123578899999999888776654      


Q ss_pred             -cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       +|.++|.++....     ........+.+++|+.++..+++++... ..+-.+++.+++...+...             
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  148 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAAD-------------  148 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCC-------------
Confidence             4567888654321     1122334457889999988888876654 1111344444432222100             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  235 (303)
                         +.  ...   |+.+|...+     +   .... +++..+.|+.|..+...........  .... ......  ...+
T Consensus       149 ---~~--~~~---Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~--~~~~~~~~~~~--~~~~  216 (272)
T PRK08589        149 ---LY--RSG---YNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSED--EAGKTFRENQK--WMTP  216 (272)
T ss_pred             ---CC--Cch---HHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchh--hHHHHHhhhhh--ccCC
Confidence               00  122   666655443     1   1122 9999999999876421110000000  0000 000000  0001


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               +-.+.+++++|.++++++...... ..|+.+.+.++.
T Consensus       217 ---------~~~~~~~~~va~~~~~l~s~~~~~-~~G~~i~vdgg~  252 (272)
T PRK08589        217 ---------LGRLGKPEEVAKLVVFLASDDSSF-ITGETIRIDGGV  252 (272)
T ss_pred             ---------CCCCcCHHHHHHHHHHHcCchhcC-cCCCEEEECCCc
Confidence                     112457899999998887654322 345777776664

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.49  E-value=8e-12  Score=108.31  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      .+++|+|+||||+|+||++++++|+ ..|++|++++|+..+..     .    ....+.++.+|+.|.++++++++.   
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~-~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALA-AKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            3457899999999999999999999 68999999999765421     1    123577889999999988877653   


Q ss_pred             ----cCceeEEeecccccC--ChHHHHHHHHHHHHHHHHHHHHHh
Q 042242           93 ----LEDVTHIFWVTWASQ--FASDMHKCCEQNKAMMCNALNAIL  131 (303)
Q Consensus        93 ----~~~V~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~  131 (303)
                          +|.++|.++......  ........+++|+.+...+...+.
T Consensus        92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll  136 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLL  136 (306)
T ss_pred             hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHH
Confidence                466888876532221  122223478999999554444443

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.49  E-value=1.9e-12  Score=123.13  Aligned_cols=230  Identities=14%  Similarity=0.051  Sum_probs=130.9

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhc
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      ...++++|+||||||+|+||++++++|+ +.|++|++++|+.....     .    ....+..+++|++|.+++.++++.
T Consensus       408 ~~~~l~gkvvLVTGasggIG~aiA~~La-~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~  486 (676)
T TIGR02632       408 KEKTLARRVAFVTGGAGGIGRETARRLA-AEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFAD  486 (676)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHH
Confidence            3445567999999999999999999999 68999999999865432     0    112466889999999998888763


Q ss_pred             -------cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcc
Q 042242           93 -------LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        93 -------~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                             +|.++|.++.....    .........+++|+.+...+...+....   ..-.+++++++...+      +  
T Consensus       487 i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~------~--  558 (676)
T TIGR02632       487 VALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAV------Y--  558 (676)
T ss_pred             HHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhc------C--
Confidence                   56688887653321    1223344577888888777665544321   111234444432111      0  


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCcee-ecCCCCccchhhHHHHHHHHhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLL-GSSHRSLYNFLGCLCVYGAVCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~  228 (303)
                        ..+        ...+   |+.+|...+     +.   ... +++..++|+.|+ |.+.... .+...    .....  
T Consensus       559 --~~~--------~~~a---Y~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~-~~~~~----~~~~~--  618 (676)
T TIGR02632       559 --AGK--------NASA---YSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDG-EWREE----RAAAY--  618 (676)
T ss_pred             --CCC--------CCHH---HHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccc-cchhh----hhhcc--
Confidence              000        0223   777766554     11   112 999999999887 3211110 00000    00000  


Q ss_pred             CCceeeCCc-hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          229 NLPFVFGGT-REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       229 ~~~~~~~g~-~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      +.+...... .... ..+...++++|+|+++++++...... ..|..+++.++..
T Consensus       619 ~~~~~~~~~~~~~r-~~l~r~v~peDVA~av~~L~s~~~~~-~TG~~i~vDGG~~  671 (676)
T TIGR02632       619 GIPADELEEHYAKR-TLLKRHIFPADIAEAVFFLASSKSEK-TTGCIITVDGGVP  671 (676)
T ss_pred             cCChHHHHHHHHhc-CCcCCCcCHHHHHHHHHHHhCCcccC-CcCcEEEECCCch
Confidence            000000000 0000 11223578899999999887544322 3458898887753

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.48  E-value=1.1e-11  Score=103.83  Aligned_cols=210  Identities=12%  Similarity=0.135  Sum_probs=122.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc-ccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-ITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~-~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      ++|+++||||+|+||++++++|+ +.|++|+++.++.. ...     .  ....+..+.+|+.|.+++.+++++      
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~-~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLH-KDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            35899999999999999999999 68999887654322 211     0  122466778999999988777653      


Q ss_pred             -cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       +|.|+|+++...    ......+..+.+++|+.++..+.+++...  .....+++.+++....      .      +. 
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~------~------~~-  147 (246)
T PRK12938         81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQ------K------GQ-  147 (246)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhcc------C------CC-
Confidence             566888876432    12233445568899999988877776553  1122344444432111      0      00 


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           ....+   |+.+|...+         +. .+ +++..++|+.+.++.....   ....  ...+..  ..+    
T Consensus       148 -----~~~~~---y~~sK~a~~~~~~~l~~~~~~~g-i~v~~i~pg~~~t~~~~~~---~~~~--~~~~~~--~~~----  207 (246)
T PRK12938        148 -----FGQTN---YSTAKAGIHGFTMSLAQEVATKG-VTVNTVSPGYIGTDMVKAI---RPDV--LEKIVA--TIP----  207 (246)
T ss_pred             -----CCChh---HHHHHHHHHHHHHHHHHHhhhhC-eEEEEEEecccCCchhhhc---ChHH--HHHHHh--cCC----
Confidence                 00122   666555322         11 23 9999999999887422111   0110  001111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                               ...+.+.++++.++.+++..+... ..|+.+.+.++
T Consensus       208 ---------~~~~~~~~~v~~~~~~l~~~~~~~-~~g~~~~~~~g  242 (246)
T PRK12938        208 ---------VRRLGSPDEIGSIVAWLASEESGF-STGADFSLNGG  242 (246)
T ss_pred             ---------ccCCcCHHHHHHHHHHHcCcccCC-ccCcEEEECCc
Confidence                     112456788888888877554321 34577877665

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.48  E-value=5.5e-12  Score=106.26  Aligned_cols=187  Identities=14%  Similarity=0.058  Sum_probs=111.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-cc-----cc---CCCeEEEEecCCCHHHHHHHHh------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-TA-----IQ---SSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-~~-----~~---~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      ..++|+||||+|.||++++++|++..|++|++++|++++ ..     ..   ..+++++++|+.|.+++.+.++      
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            457999999999999999999984346999999998764 11     11   1268899999999887665554      


Q ss_pred             ccCceeEEeeccccc-C---ChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTWAS-Q---FASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~-~---~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      ..|.++|.++..... .   ......+.+++|+.++..+...+.+.  ..+..+++.+++...+.+            . 
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~------------~-  153 (253)
T PRK07904         87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERV------------R-  153 (253)
T ss_pred             CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCC------------C-
Confidence            345466655432111 1   11112246899999887754443332  112234444443211100            0 


Q ss_pred             cCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                         +  +...   |+.+|....        ..... +++++++|+.+..+..  .     .          ...+   + 
T Consensus       154 ---~--~~~~---Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~--~-----~----------~~~~---~-  204 (253)
T PRK07904        154 ---R--SNFV---YGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMS--A-----H----------AKEA---P-  204 (253)
T ss_pred             ---C--CCcc---hHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchh--c-----c----------CCCC---C-
Confidence               0  0122   666554332        11222 9999999999986211  0     0          0000   0 


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                                ...+.+++|+.++..+.++
T Consensus       205 ----------~~~~~~~~A~~i~~~~~~~  223 (253)
T PRK07904        205 ----------LTVDKEDVAKLAVTAVAKG  223 (253)
T ss_pred             ----------CCCCHHHHHHHHHHHHHcC
Confidence                      1357889999999988765

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.48  E-value=4.6e-12  Score=105.63  Aligned_cols=206  Identities=16%  Similarity=0.111  Sum_probs=121.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHHHHhcc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKRKLTLL-------   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~~-------   93 (303)
                      ++++|+||||+|+||+++++.|+ +.|++|++++|++.....      ...+++++.+|+.+.+++.++++.+       
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFAL-KEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999998 689999999998764321      1135788999999999887776543       


Q ss_pred             CceeEEeeccccc--CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           94 EDVTHIFWVTWAS--QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        94 ~~V~~~~~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      |.++|.++.....  .........++.|+.+...+++.+.....+-.+++..++....      +     .+.    +  
T Consensus        83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~------~-----~~~----~--  145 (238)
T PRK05786         83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGI------Y-----KAS----P--  145 (238)
T ss_pred             CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhc------c-----cCC----C--
Confidence            5466665432111  1112233467899998888888776642111233333321110      0     000    0  


Q ss_pred             CCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          172 SKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      +...   |..+|...+         +. .+ ++++++||+.++++-  ...   ..+       +  ... ...      
T Consensus       146 ~~~~---Y~~sK~~~~~~~~~~~~~~~~~g-i~v~~i~pg~v~~~~--~~~---~~~-------~--~~~-~~~------  200 (238)
T PRK05786        146 DQLS---YAVAKAGLAKAVEILASELLGRG-IRVNGIAPTTISGDF--EPE---RNW-------K--KLR-KLG------  200 (238)
T ss_pred             CchH---HHHHHHHHHHHHHHHHHHHhhcC-eEEEEEecCccCCCC--Cch---hhh-------h--hhc-ccc------
Confidence            0122   665554332         11 23 999999999999842  110   010       0  000 000      


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                          ......+++++++++++..+... ..|..+.+.++
T Consensus       201 ----~~~~~~~~va~~~~~~~~~~~~~-~~g~~~~~~~~  234 (238)
T PRK05786        201 ----DDMAPPEDFAKVIIWLLTDEADW-VDGVVIPVDGG  234 (238)
T ss_pred             ----CCCCCHHHHHHHHHHHhcccccC-ccCCEEEECCc
Confidence                11456788999999988654321 23466666543

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.48  E-value=4.7e-12  Score=110.56  Aligned_cols=195  Identities=13%  Similarity=0.048  Sum_probs=121.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      .+++|+||||+|.||++++++|+ ..|++|++++|++....     .  ...++.++.+|++|.++++++++       .
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la-~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFA-RRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999 68999999999875432     1  12356788999999998887764       3


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.++|.++....    +....+..+.+++|+.++.++..++...  ......++.+++...|...          |   
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~----------p---  151 (330)
T PRK06139         85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ----------P---  151 (330)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC----------C---
Confidence            4668888664322    2233444568999999999888876543  1112234443332222110          0   


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                         .  ...   |..+|....         ..... ++++.+.|+.+.++......+..             +...    
T Consensus       152 ---~--~~~---Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~~-------------~~~~----  206 (330)
T PRK06139        152 ---Y--AAA---YSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYT-------------GRRL----  206 (330)
T ss_pred             ---C--chh---HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccccc-------------cccc----
Confidence               0  122   666665322         22222 99999999999875322110000             0000    


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                            .....+.+.+++|++++.++..+.
T Consensus       207 ------~~~~~~~~pe~vA~~il~~~~~~~  230 (330)
T PRK06139        207 ------TPPPPVYDPRRVAKAVVRLADRPR  230 (330)
T ss_pred             ------cCCCCCCCHHHHHHHHHHHHhCCC
Confidence                  001124578889999988887653

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.47  E-value=9e-12  Score=105.58  Aligned_cols=107  Identities=17%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+++||||+|.||++++++|+ +.|++|++++|++.+..     .   ...++.++.+|++|.++++++++.     
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLA-RAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            356899999999999999999999 68999999999865432     1   023578899999999988887764     


Q ss_pred             -cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 -LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 -~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                       .|.++|.++...    .+.+..+..+.+++|+.+...+++++...
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~  130 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPA  130 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             455777765422    12234455568899988877777666543

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.47  E-value=2.6e-12  Score=108.86  Aligned_cols=106  Identities=17%  Similarity=0.201  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----c--cCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----I--QSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~--~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      ++++++||||+|+||++++++|+ +.|++|++++|+.....    .  ...++.++.+|+.+.+++.++++.       .
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~-~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFA-RHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999 68999999999764211    1  123577889999999988887764       3


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      |.++|.++....    ........+.++.|+.++..+++++...
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  127 (263)
T PRK08226         84 DILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPE  127 (263)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            558888664221    2223344457899999999999887653

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.47  E-value=2e-12  Score=112.27  Aligned_cols=171  Identities=16%  Similarity=0.038  Sum_probs=107.3

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--c--CCCeEEEEecCCCHHHHHHHHhc-
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--Q--SSSYCFISCDLLNPLDIKRKLTL-   92 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~--~~~~~~~~~D~~~~~~l~~~~~~-   92 (303)
                      ...+++|+++||||+++||.+++++|+ ..|++|++++|+..+..     .  .  ...+.++.+|+.|.++++++++. 
T Consensus         9 ~~~l~gk~~lITGas~GIG~~~a~~La-~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~   87 (313)
T PRK05854          9 VPDLSGKRAVVTGASDGLGLGLARRLA-AAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQL   87 (313)
T ss_pred             CcccCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence            344567999999999999999999999 68999999999865431     1  1  13578899999999988877654 


Q ss_pred             ------cCceeEEeeccccc---CChHHHHHHHHHHHHHHHHHHHHHhhc----cCCccEEEEeecccccccccCCCccc
Q 042242           93 ------LEDVTHIFWVTWAS---QFASDMHKCCEQNKAMMCNALNAILPR----AKALKHVSLQTGMKHYVSLQGLPEEK  159 (303)
Q Consensus        93 ------~~~V~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~~~~~~s~~~~y~~~~~~~g~~  159 (303)
                            +|.++|.|+.....   ......+..+.+|+.+...+...+...    ..+++.+++.+   .+.+...     
T Consensus        88 ~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~---~~~~~~~-----  159 (313)
T PRK05854         88 RAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIA---ARRGAIN-----  159 (313)
T ss_pred             HHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechh---hcCCCcC-----
Confidence                  45577776643221   122333457899999988777776643    23333333322   2211100     


Q ss_pred             ccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh----c-CC-cceEEecCCceeec
Q 042242          160 QVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL----A-GK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       160 ~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~----~-~~-~~~~ilRp~~v~G~  206 (303)
                       ..+..++.+..+..   .|+.+|....     ++    . +. +.+..+.||.+-..
T Consensus       160 -~~~~~~~~~~~~~~---~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~  213 (313)
T PRK05854        160 -WDDLNWERSYAGMR---AYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN  213 (313)
T ss_pred             -cccccccccCcchh---hhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence             11122222222122   3787776544     21    1 22 89999999988653

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.47  E-value=3.9e-12  Score=107.80  Aligned_cols=106  Identities=17%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-c-----cCCCeEEEEecCCCHHHHHHHHhc------cC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-I-----QSSSYCFISCDLLNPLDIKRKLTL------LE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~-----~~~~~~~~~~D~~~~~~l~~~~~~------~~   94 (303)
                      ++++++||||+|+||+.++++|+ +.|++|++++|++.... .     ...++.++.+|+.|.+++.+.++.      .|
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALA-AAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            45799999999999999999999 68999999999865432 1     123678899999999988776653      46


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      .++|+++....    ..+.....+.+++|+.++.++++.+...
T Consensus        83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  125 (263)
T PRK09072         83 VLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPL  125 (263)
T ss_pred             EEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            68888664321    1233444568899999999999988764

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.47  E-value=4.6e-12  Score=105.11  Aligned_cols=208  Identities=14%  Similarity=0.044  Sum_probs=125.5

Q ss_pred             EEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHHHHhcc---CceeEEeec
Q 042242           32 VIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKRKLTLL---EDVTHIFWV  102 (303)
Q Consensus        32 lVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~~---~~V~~~~~~  102 (303)
                      +||||+|+||+.++++|+ +.|++|++++|++.....      ...+++++.+|++|.+++.++++..   |.++|.++.
T Consensus         1 lItGas~~iG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~   79 (230)
T PRK07041          1 LVVGGSSGIGLALARAFA-AEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD   79 (230)
T ss_pred             CeecCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            699999999999999999 689999999998644221      1246788999999999999988764   557777654


Q ss_pred             ccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242          103 TWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus       103 ~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      ...    ........+.++.|+.+...++++....  ...+++..++...|...                  .+..+   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~g~iv~~ss~~~~~~~------------------~~~~~---  136 (230)
T PRK07041         80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIA--PGGSLTFVSGFAAVRPS------------------ASGVL---  136 (230)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhc--CCeEEEEECchhhcCCC------------------CcchH---
Confidence            221    1233445568899999999998854432  23455554443222110                  00223   


Q ss_pred             HHHHHHHHH-----HhcC--CcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccH
Q 042242          179 YVLEDLLKE-----KLAG--KVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDS  251 (303)
Q Consensus       179 y~~~k~~~e-----~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  251 (303)
                      |+.+|...+     ....  .++++.++|+.+-.+.......- ...........  ..+.             ....+.
T Consensus       137 Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~-~~~~~~~~~~~--~~~~-------------~~~~~~  200 (230)
T PRK07041        137 QGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGD-AREAMFAAAAE--RLPA-------------RRVGQP  200 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhcc-chHHHHHHHHh--cCCC-------------CCCcCH
Confidence            666655544     1111  17788888887755211000000 00000000110  1110             013467


Q ss_pred             HHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          252 RLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       252 ~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      +|+|++++.++.++..   .|+.|++.++.+
T Consensus       201 ~dva~~~~~l~~~~~~---~G~~~~v~gg~~  228 (230)
T PRK07041        201 EDVANAILFLAANGFT---TGSTVLVDGGHA  228 (230)
T ss_pred             HHHHHHHHHHhcCCCc---CCcEEEeCCCee
Confidence            8999999998876533   358999988754

>TIGR02415 23BDH acetoin reductases

Probab=99.47  E-value=6.8e-12  Score=105.67  Aligned_cols=104  Identities=15%  Similarity=0.113  Sum_probs=77.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      |+++||||+|+||.+++++|+ +.|++|++++|++....     .  ...++.++.+|+.|.+++.++++.       +|
T Consensus         1 k~~lItG~sg~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLA-KDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            589999999999999999999 68999999999754321     1  123577889999999988877654       36


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      .|+|.++....    ..+..+..+.+++|+.++..+++++...
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  122 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQ  122 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            68888765322    2233444568899999988887776543

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.46  E-value=1.3e-11  Score=104.41  Aligned_cols=215  Identities=9%  Similarity=0.002  Sum_probs=121.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c-----c---cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A-----I---QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~-----~---~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      .+++|+++||||++.||++++++|+ +.|++|+++.|+.... .     .   ...++.++++|++|.++++++++.   
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFA-QSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999 6899998887654321 1     1   123578899999999988877764   


Q ss_pred             ----cCceeEEeeccc----------ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCC
Q 042242           93 ----LEDVTHIFWVTW----------ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLP  156 (303)
Q Consensus        93 ----~~~V~~~~~~~~----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~  156 (303)
                          +|.++|.++...          ...+.....+.+++|+.+...+...+....  ....+++.+++...+.      
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------  157 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV------  157 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc------
Confidence                345777764311          111233444577888888776666554431  1122444444321110      


Q ss_pred             cccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhh
Q 042242          157 EEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCK  226 (303)
Q Consensus       157 g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  226 (303)
                            +.    +.  ...   |+.+|...+         +. .+ +++..+.|+.+-.+......+. ...  .....+
T Consensus       158 ------~~----~~--~~~---Y~asK~a~~~~~~~la~el~~~g-i~v~~v~PG~i~T~~~~~~~~~-~~~--~~~~~~  218 (260)
T PRK08416        158 ------YI----EN--YAG---HGTSKAAVETMVKYAATELGEKN-IRVNAVSGGPIDTDALKAFTNY-EEV--KAKTEE  218 (260)
T ss_pred             ------CC----CC--ccc---chhhHHHHHHHHHHHHHHhhhhC-eEEEEEeeCcccChhhhhccCC-HHH--HHHHHh
Confidence                  00    00  112   555544433         11 23 9999999988755311100000 000  000000


Q ss_pred             hCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          227 HLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                        ..|             ...+.+++|+|.++++++...... ..|+.+.+.++.
T Consensus       219 --~~~-------------~~r~~~p~~va~~~~~l~~~~~~~-~~G~~i~vdgg~  257 (260)
T PRK08416        219 --LSP-------------LNRMGQPEDLAGACLFLCSEKASW-LTGQTIVVDGGT  257 (260)
T ss_pred             --cCC-------------CCCCCCHHHHHHHHHHHcChhhhc-ccCcEEEEcCCe
Confidence              111             112567889999999987654321 345777776653

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.46  E-value=7.1e-12  Score=105.59  Aligned_cols=213  Identities=13%  Similarity=0.055  Sum_probs=127.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---c--cCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---I--QSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~--~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +.+|+++||||+|.||++++++|+ +.|++|++++|......   .  ...++..+++|+.|.+++.++++.       .
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~-~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLA-EAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            456899999999999999999999 68999998887643211   1  123577889999999988877764       4


Q ss_pred             CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-C--CccEEEEeecccccccccCCCcccccCCcCc
Q 042242           94 EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA-K--ALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        94 ~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~--~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      |.++|+++...    .+....+..+.+++|+.++..+++++.... .  .-..++.+++...+.+.              
T Consensus        87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------  152 (253)
T PRK08993         87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG--------------  152 (253)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC--------------
Confidence            66888876432    122344555689999999999998876541 1  11234444443232111              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                        +.  ...   |+.+|...+         .. .+ +++..++|+.+-.+.....   .........+..  ..|    .
T Consensus       153 --~~--~~~---Y~~sKaa~~~~~~~la~e~~~~g-i~v~~v~pG~v~T~~~~~~---~~~~~~~~~~~~--~~p----~  215 (253)
T PRK08993        153 --IR--VPS---YTASKSGVMGVTRLMANEWAKHN-INVNAIAPGYMATNNTQQL---RADEQRSAEILD--RIP----A  215 (253)
T ss_pred             --CC--Ccc---hHHHHHHHHHHHHHHHHHhhhhC-eEEEEEeeCcccCcchhhh---ccchHHHHHHHh--cCC----C
Confidence              00  112   565554433         11 23 9999999999976321100   000000000100  111    1


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                               ..+...+++|..+++++...... ..|..+.+.++
T Consensus       216 ---------~r~~~p~eva~~~~~l~s~~~~~-~~G~~~~~dgg  249 (253)
T PRK08993        216 ---------GRWGLPSDLMGPVVFLASSASDY-INGYTIAVDGG  249 (253)
T ss_pred             ---------CCCcCHHHHHHHHHHHhCccccC-ccCcEEEECCC
Confidence                     11456789999999988654332 34566666554

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.46  E-value=4.6e-12  Score=109.06  Aligned_cols=160  Identities=12%  Similarity=0.076  Sum_probs=103.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh------
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      .+.+++|+||||+|+||+++++.|+ +.|++|++++|+.+...     .  ...++.++++|+.|.+++.++++      
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  115 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI  115 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3346899999999999999999999 68999999999865421     0  12346788999999998888777      


Q ss_pred             -ccCceeEEeecccccC------ChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           92 -LLEDVTHIFWVTWASQ------FASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 -~~~~V~~~~~~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                       .+|.++|+++......      ...+....+++|+.+...+++++...  .....+++.+++...+..           
T Consensus       116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  184 (293)
T PRK05866        116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE-----------  184 (293)
T ss_pred             CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC-----------
Confidence             4566888876543211      12333457899999988888876543  112234444443212110           


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLG  205 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G  205 (303)
                          ..+.  ...   |+.+|...+        ..... +++++++|+.+-.
T Consensus       185 ----~~p~--~~~---Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T  227 (293)
T PRK05866        185 ----ASPL--FSV---YNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVAT  227 (293)
T ss_pred             ----CCCC--cch---HHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccC
Confidence                0010  223   676665443        11222 9999999987665

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.45  E-value=4.2e-12  Score=107.81  Aligned_cols=105  Identities=10%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-------cCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-------LEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~~   98 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++....  ..++.++++|++|.++++++++.       +|.++|
T Consensus         7 l~~k~vlItG~s~gIG~~la~~l~-~~G~~v~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~   83 (266)
T PRK06171          7 LQGKIIIVTGGSSGIGLAIVKELL-ANGANVVNADIHGGDGQ--HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN   83 (266)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCccccc--cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            457899999999999999999999 68999999999875432  34678899999999988877764       466888


Q ss_pred             Eeecccc-------------cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           99 IFWVTWA-------------SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        99 ~~~~~~~-------------~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +++....             ..+..+..+.+++|+.++..+++++...
T Consensus        84 ~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  131 (266)
T PRK06171         84 NAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQ  131 (266)
T ss_pred             CCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHH
Confidence            8764221             1233444558899999999999888764

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.45  E-value=2.6e-11  Score=102.67  Aligned_cols=213  Identities=15%  Similarity=0.066  Sum_probs=122.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      .++|+++||||+|.||++++++|+ +.|++|+++.|+..+..      .  ...++.++.+|++|.+++.+.++.     
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~-~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~   83 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFG-KEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF   83 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            457899999999999999999999 68999988888543211      1  123567889999999988777654     


Q ss_pred             --cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 --LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 --~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        +|.++|.++.....    .......+.+++|+.++..++..+...   ...-.+++.+++...+              
T Consensus        84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~--------------  149 (261)
T PRK08936         84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ--------------  149 (261)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc--------------
Confidence              45688887653221    223344457899988877665554332   1111234443331111              


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                          .+..+..+   |+.+|...+         +. .+ +++++++|+.+..+........ ...  ...+..  ..|  
T Consensus       150 ----~~~~~~~~---Y~~sKaa~~~~~~~la~e~~~~g-i~v~~v~pg~v~t~~~~~~~~~-~~~--~~~~~~--~~~--  214 (261)
T PRK08936        150 ----IPWPLFVH---YAASKGGVKLMTETLAMEYAPKG-IRVNNIGPGAINTPINAEKFAD-PKQ--RADVES--MIP--  214 (261)
T ss_pred             ----CCCCCCcc---cHHHHHHHHHHHHHHHHHHhhcC-eEEEEEEECcCCCCccccccCC-HHH--HHHHHh--cCC--
Confidence                01111223   666553222         22 23 9999999999987532211100 010  000100  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                                 +..+.+.++++..+++++..+... ..|..+.+.++
T Consensus       215 -----------~~~~~~~~~va~~~~~l~s~~~~~-~~G~~i~~d~g  249 (261)
T PRK08936        215 -----------MGYIGKPEEIAAVAAWLASSEASY-VTGITLFADGG  249 (261)
T ss_pred             -----------CCCCcCHHHHHHHHHHHcCcccCC-ccCcEEEECCC
Confidence                       112567788999998887654322 33466656554

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.45  E-value=3.1e-12  Score=107.11  Aligned_cols=104  Identities=18%  Similarity=0.074  Sum_probs=79.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecCCCHHHHHHHHhcc----Cce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDLLNPLDIKRKLTLL----EDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~~~~~----~~V   96 (303)
                      |+|+||||+|+||++++++|+ +.|++|++++|++++...        ...+++++++|+.|.+++++.++.+    |.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          2 KKILIIGATSDIARACARRYA-AAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            689999999999999999999 689999999998754321        1236889999999999888877653    557


Q ss_pred             eEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           97 THIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        97 ~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +|.++...    ...+..+..+.++.|+.++..+++++...
T Consensus        81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  121 (243)
T PRK07102         81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANR  121 (243)
T ss_pred             EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            77654321    12233444467899999999999887754

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.45  E-value=1.7e-11  Score=103.95  Aligned_cols=107  Identities=20%  Similarity=0.127  Sum_probs=77.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------cc--CCCeEEEEecCCCHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQ--SSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~--~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      .++|+++||||+|+||++++++|+ ..|++|++++|++.+..       ..  ..++.++.+|++|.+++.++++.    
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLL-EAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR   84 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            457899999999999999999999 68999999999875432       01  12567889999999988776654    


Q ss_pred             ---cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 ---LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 ---~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                         +|.++|.++...    ......+..+.+++|+.+...+++.+...
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  132 (265)
T PRK07062         85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPL  132 (265)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence               355788766422    12223344457888988877777766543

>PRK06484 short chain dehydrogenase; Validated

Probab=99.44  E-value=1.2e-11  Score=114.98  Aligned_cols=215  Identities=15%  Similarity=0.149  Sum_probs=131.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      .+|+++||||+|.||++++++|+ +.|++|++++|++....    ....++..+.+|++|.+++.++++.       +|.
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~  346 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFA-AAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV  346 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999 68999999999865432    1123566789999999988877754       456


Q ss_pred             eeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           96 VTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        96 V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      ++|.++...     ...+..+..+.+++|+.++..+++++.....+-.+++.+++...+...                + 
T Consensus       347 li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------~-  409 (520)
T PRK06484        347 LVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLAL----------------P-  409 (520)
T ss_pred             EEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCC----------------C-
Confidence            888866431     122334445689999999999999887652222344444432121000                0 


Q ss_pred             CCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          171 VSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                       +...   |+.+|...+     .   .... +++..++|+.+..+........ .. ..+..+.+  ..|          
T Consensus       410 -~~~~---Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~-~~~~~~~~--~~~----------  471 (520)
T PRK06484        410 -PRNA---YCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKAS-GR-ADFDSIRR--RIP----------  471 (520)
T ss_pred             -CCch---hHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccc-cH-HHHHHHHh--cCC----------
Confidence             0122   666555443     1   1122 9999999999987422111000 00 00011111  111          


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                         +-.+.+++|+|.++++++...... ..|+.+.+.++.
T Consensus       472 ---~~~~~~~~dia~~~~~l~s~~~~~-~~G~~i~vdgg~  507 (520)
T PRK06484        472 ---LGRLGDPEEVAEAIAFLASPAASY-VNGATLTVDGGW  507 (520)
T ss_pred             ---CCCCcCHHHHHHHHHHHhCccccC-ccCcEEEECCCc
Confidence               112457899999999987654321 345788887664

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.44  E-value=1.1e-11  Score=105.11  Aligned_cols=217  Identities=13%  Similarity=0.026  Sum_probs=127.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|++.+..    ....++.++++|+.|.+++..+++.       +|.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFL-AEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46899999999999999999999 68999999999865432    1123577899999999888777654       456


Q ss_pred             eeEEeecccc-----cCChHH----HHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           96 VTHIFWVTWA-----SQFASD----MHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        96 V~~~~~~~~~-----~~~~~~----~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      ++|.++....     ......    ..+.+++|+.++..+++++.... ..-..++.+++...+...             
T Consensus        84 li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------------  150 (263)
T PRK06200         84 FVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG-------------  150 (263)
T ss_pred             EEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC-------------
Confidence            8888664211     111111    23467899999998888887541 111234444432222100             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCc-cc----hhhHHH-HHHHHhhhCCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSL-YN----FLGCLC-VYGAVCKHLNL  230 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~-~~----~~~~~~-~~~~~~~~~~~  230 (303)
                           .+...   |+.+|...+         +... +++..+.|+.+..+-.... ..    ...... ....+..  . 
T Consensus       151 -----~~~~~---Y~~sK~a~~~~~~~la~el~~~-Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  218 (263)
T PRK06200        151 -----GGGPL---YTASKHAVVGLVRQLAYELAPK-IRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAA--I-  218 (263)
T ss_pred             -----CCCch---hHHHHHHHHHHHHHHHHHHhcC-cEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhc--C-
Confidence                 00112   666555433         2234 8999999998865321100 00    000000 0000000  1 


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                  ..+..+...+++|.++++++.........|+.+.+.++.
T Consensus       219 ------------~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG~  257 (263)
T PRK06200        219 ------------TPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGGL  257 (263)
T ss_pred             ------------CCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCce
Confidence                        111235677899999998876441212345778777663

>PRK07069 short chain dehydrogenase; Validated

Probab=99.44  E-value=5.2e-12  Score=106.16  Aligned_cols=211  Identities=15%  Similarity=0.109  Sum_probs=118.8

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC-Ccccc-----cc----CCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARK-PEITA-----IQ----SSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~-~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +|+||||+|+||+++++.|+ +.|++|++++|+ .+...     ..    ...+.++++|+.|.+++.++++.       
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMA-EQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG   79 (251)
T ss_pred             CEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            48999999999999999999 689999999998 33211     00    11234578999999988777654       


Q ss_pred             cCceeEEeeccccc----CChHHHHHHHHHHHH----HHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 LEDVTHIFWVTWAS----QFASDMHKCCEQNKA----MMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~----~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      +|.|+|+++.....    ....+....+++|+.    ++..++..+++.  +..+++.+++...+.+.            
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss~~~~~~~------------  145 (251)
T PRK07069         80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISSVAAFKAE------------  145 (251)
T ss_pred             ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecChhhccCC------------
Confidence            45688887643221    122333457788888    556666666543  23355555443232111            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                          +.  ...   |+.+|...+         +. .+. ++++.++|+.+.++..............+..+.+  +.+  
T Consensus       146 ----~~--~~~---Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~--  212 (251)
T PRK07069        146 ----PD--YTA---YNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLAR--GVP--  212 (251)
T ss_pred             ----CC--Cch---hHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhc--cCC--
Confidence                00  112   665554433         11 222 8889999998887432111000000000000100  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                                 ...+.+++|+|.++++++..+... ..|+.+.+.++
T Consensus       213 -----------~~~~~~~~~va~~~~~l~~~~~~~-~~g~~i~~~~g  247 (251)
T PRK07069        213 -----------LGRLGEPDDVAHAVLYLASDESRF-VTGAELVIDGG  247 (251)
T ss_pred             -----------CCCCcCHHHHHHHHHHHcCccccC-ccCCEEEECCC
Confidence                       112457899999998876554322 34466655544

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.43  E-value=2.2e-11  Score=105.07  Aligned_cols=158  Identities=16%  Similarity=0.098  Sum_probs=104.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      ..+++|+||||+|.||..+++.|. +.|++|++++|++....     . ....+..+.+|++|.+++.++++.       
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLH-ARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG   85 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            456899999999999999999998 68999999999865432     1 112455667999999988776653       


Q ss_pred             cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           93 LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        93 ~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      +|.|+|.++...    ...+.....+.+++|+.++.++++++... ..+-.+++.+++...+...          +    
T Consensus        86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~----------~----  151 (296)
T PRK05872         86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAA----------P----  151 (296)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCC----------C----
Confidence            456888766432    12233444568899999999999988754 1122345555543222110          0    


Q ss_pred             CCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeec
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~  206 (303)
                        .  ...   |+.+|...+         .. .+ +.+.++.|+.+..+
T Consensus       152 --~--~~~---Y~asKaal~~~~~~l~~e~~~~g-i~v~~v~Pg~v~T~  192 (296)
T PRK05872        152 --G--MAA---YCASKAGVEAFANALRLEVAHHG-VTVGSAYLSWIDTD  192 (296)
T ss_pred             --C--chH---HHHHHHHHHHHHHHHHHHHHHHC-cEEEEEecCcccch
Confidence              0  122   776665443         11 23 89999999888764

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.42  E-value=2.7e-11  Score=103.35  Aligned_cols=101  Identities=18%  Similarity=0.109  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc--CCCeEEEEecCCCHHHHHHHHhc------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ--SSSYCFISCDLLNPLDIKRKLTL------L   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~--~~~~~~~~~D~~~~~~l~~~~~~------~   93 (303)
                      |+|+++|||+ |+||++++++|.  .|++|++++|++.+..     ..  ..++.++++|++|.+++.++++.      +
T Consensus         1 ~~k~~lItGa-~gIG~~la~~l~--~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          1 MKEVVVVIGA-GGIGQAIARRVG--AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             CCCEEEEECC-ChHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            6789999997 799999999995  5899999999865432     11  13577889999999988877754      4


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      |.++|.++...   ...+..+.+++|+.++.++++++...
T Consensus        78 d~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~  114 (275)
T PRK06940         78 TGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKV  114 (275)
T ss_pred             CEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHH
Confidence            55788776432   22334458999999999999988765

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.42  E-value=4.9e-11  Score=101.01  Aligned_cols=212  Identities=10%  Similarity=0.058  Sum_probs=126.4

Q ss_pred             CCCCEEEEEcCCC-hhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc----CCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTG-LVGKELARRLISTANWKVYGIARKPEITA-----IQ----SSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG-~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      +.+++++||||+| .||+.+++.|+ ..|++|++++|+..+..     ..    ..++.++++|+.+.+++.++++.   
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRAL-EEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            3468999999998 69999999999 68999999998765422     10    13577889999999888877754   


Q ss_pred             ----cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ccEEEEeecccccccccCCCccccc
Q 042242           93 ----LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KA-LKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 ----~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                          +|.++|+++...    ...+..+..+.++.|+.++..+++++....  .. ...++.+++...+  .         
T Consensus        94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~--~---------  162 (262)
T PRK07831         94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW--R---------  162 (262)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc--C---------
Confidence                456888876422    122234445578899999999888876541  11 2233333321111  0         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                       +.      .+...   |+.+|...+     ++   ... +++..++|+.+..+......   .. ..+..+..  ..+ 
T Consensus       163 -~~------~~~~~---Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~---~~-~~~~~~~~--~~~-  225 (262)
T PRK07831        163 -AQ------HGQAH---YAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT---SA-ELLDELAA--REA-  225 (262)
T ss_pred             -CC------CCCcc---hHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc---CH-HHHHHHHh--cCC-
Confidence             00      00122   666555443     11   122 99999999999874221110   00 00111111  112 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeec
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAIN  279 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~  279 (303)
                                  +..+...+|+|.++++++...... ..|+.+.+..
T Consensus       226 ------------~~r~~~p~~va~~~~~l~s~~~~~-itG~~i~v~~  259 (262)
T PRK07831        226 ------------FGRAAEPWEVANVIAFLASDYSSY-LTGEVVSVSS  259 (262)
T ss_pred             ------------CCCCcCHHHHHHHHHHHcCchhcC-cCCceEEeCC
Confidence                        112457789999999987654321 3456666654

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.42  E-value=7.1e-12  Score=103.68  Aligned_cols=104  Identities=16%  Similarity=0.211  Sum_probs=79.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc-----cCceeEEee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL-----LEDVTHIFW  101 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~-----~~~V~~~~~  101 (303)
                      ++|+||||+|+||++++++|+ +.|++|++++|++....  ....++.++.+|+.|.++++++++.     +|.|+|.++
T Consensus         2 k~vlItG~sg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLL-ERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHH-hCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            689999999999999999999 68999999999876532  1234677889999999988877764     456888865


Q ss_pred             cccc------cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          102 VTWA------SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       102 ~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      ....      .....+....+++|+.++..+++++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  118 (225)
T PRK08177         81 ISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQ  118 (225)
T ss_pred             ccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHh
Confidence            4311      1123344457789999999998887754

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.41  E-value=6.3e-11  Score=99.79  Aligned_cols=214  Identities=11%  Similarity=0.065  Sum_probs=124.5

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +++|+++||||+  +.||+.++++|+ +.|++|++++|+.....    .....+.++++|++|+++++++++.       
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   83 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIK-DQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGK   83 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            346899999999  799999999999 68999999998732111    1123577899999999888776643       


Q ss_pred             cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .|.++|.++...        ...+.++....+++|+.++..++.++.....+-.+++.+++....            .+.
T Consensus        84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~------------~~~  151 (252)
T PRK06079         84 IDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE------------RAI  151 (252)
T ss_pred             CCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc------------ccC
Confidence            355677655321        122334445578999999988888877652111233333321110            000


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                          +.  ...   |+.+|...+        ..... +++..+.||.|-.+......+. ...  ......  ..|    
T Consensus       152 ----~~--~~~---Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~-~~~--~~~~~~--~~p----  213 (252)
T PRK06079        152 ----PN--YNV---MGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGH-KDL--LKESDS--RTV----  213 (252)
T ss_pred             ----Cc--chh---hHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCCh-HHH--HHHHHh--cCc----
Confidence                00  112   665555433        11122 9999999999876321111000 010  001111  112    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                               ...+.+++|+|.++++++...... ..|+++.+.++
T Consensus       214 ---------~~r~~~pedva~~~~~l~s~~~~~-itG~~i~vdgg  248 (252)
T PRK06079        214 ---------DGVGVTIEEVGNTAAFLLSDLSTG-VTGDIIYVDKG  248 (252)
T ss_pred             ---------ccCCCCHHHHHHHHHHHhCccccc-ccccEEEeCCc
Confidence                     112557789999999988654322 34577766655

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.41  E-value=7.1e-12  Score=104.90  Aligned_cols=155  Identities=15%  Similarity=0.070  Sum_probs=100.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhc-----------cCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTL-----------LED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~-----------~~~   95 (303)
                      ++++||||+|+||++++++|+ +.|++|++++|+..+...  ...++.++++|+.|.+++++++..           .+.
T Consensus         2 ~~vlItGasggiG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLL-QPGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL   80 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHH-hCCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence            489999999999999999999 689999999997653221  123578899999999988875543           234


Q ss_pred             eeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           96 VTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        96 V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      ++|.++....     ..+.....+.+++|+.++..+.+.+.+..  ....+++++|+...+...                
T Consensus        81 ~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------------  144 (243)
T PRK07023         81 LINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAY----------------  144 (243)
T ss_pred             EEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCC----------------
Confidence            7777654321     11234445678999999887777766541  122345555442222110                


Q ss_pred             CCCCCCccchHHHHHHHHH-----Hh--cCC-cceEEecCCceee
Q 042242          169 PRVSKSNNFYYVLEDLLKE-----KL--AGK-VAWSVHRPGLLLG  205 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e-----~~--~~~-~~~~ilRp~~v~G  205 (303)
                        .+...   |+.+|...+     +.  ... +++..++|+.+-.
T Consensus       145 --~~~~~---Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t  184 (243)
T PRK07023        145 --AGWSV---YCATKAALDHHARAVALDANRALRIVSLAPGVVDT  184 (243)
T ss_pred             --CCchH---HHHHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Confidence              00222   777666544     11  122 8999999988754

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.41  E-value=1.4e-10  Score=100.54  Aligned_cols=107  Identities=13%  Similarity=0.011  Sum_probs=79.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c--cCCCeEEEEecCCCHHHHHHHHhc----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I--QSSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~--~~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      ...+|+++||||+|+||++++++|+ +.|++|++++|+.....      .  ...++.++.+|+.|.+++.++++.    
T Consensus         9 ~l~~k~~lVTGas~gIG~~ia~~L~-~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792          9 DLSGKVAVVTGAAAGLGRAEALGLA-RLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            3457899999999999999999999 68999999987543211      1  123577889999999888777654    


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                        +|.++|.++....    ..+..+....+++|+.++..+++++..
T Consensus        88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~  133 (306)
T PRK07792         88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAA  133 (306)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence              5668888665322    223444556889999999999988754

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.40  E-value=1.2e-11  Score=103.94  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c----ccCCCeEEEEecCCCHHHHHHHHhccC---------
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A----IQSSSYCFISCDLLNPLDIKRKLTLLE---------   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~----~~~~~~~~~~~D~~~~~~l~~~~~~~~---------   94 (303)
                      |+|+||||+|+||+.++++|+ +.|++|++++|++.+. .    ....+++++++|++|.++++..++.+.         
T Consensus         2 k~vlItGasggiG~~ia~~l~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLL-EKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVS   80 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHH-hcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCC
Confidence            689999999999999999999 6899999999986321 1    112467889999999999888776542         


Q ss_pred             --ceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           95 --DVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        95 --~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                        .++|.++...     ...+.....+.+++|+.+...++..+...
T Consensus        81 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  126 (251)
T PRK06924         81 SIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKH  126 (251)
T ss_pred             ceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHH
Confidence              1334333211     12234445567888998877776665543

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.38  E-value=3e-11  Score=100.90  Aligned_cols=107  Identities=15%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecCCC--HHHHHHHH-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDLLN--PLDIKRKL-----   90 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~--~~~l~~~~-----   90 (303)
                      +++++|+||||+|+||++++++|+ +.|++|++++|++.....        ....+.++.+|+.+  .+++.+++     
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~-~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~   82 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYA-AAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE   82 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHH-HcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence            346899999999999999999999 689999999998754320        12346678899875  33333332     


Q ss_pred             ---hccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           91 ---TLLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        91 ---~~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                         ..+|.|+|+++...     ...+..+..+.+++|+.++..+++++...
T Consensus        83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  133 (239)
T PRK08703         83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPL  133 (239)
T ss_pred             HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence               23466888876422     22233445567899999999998888664

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.38  E-value=3e-11  Score=99.74  Aligned_cols=104  Identities=19%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhc-----cCceeEEeec
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTL-----LEDVTHIFWV  102 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~-----~~~V~~~~~~  102 (303)
                      ++++||||+|+||++++++|+ ..|++|++++|++.... ....+++++.+|+.+.+.+++++..     .|.|+|+++.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYR-ADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHH-hCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            689999999999999999998 68999999999865432 2223567889999999988876532     4558887654


Q ss_pred             ccc------cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          103 TWA------SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       103 ~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      ...      ..+..+....++.|+.++.++++++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  117 (222)
T PRK06953         81 YGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPL  117 (222)
T ss_pred             ccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence            311      1134455568999999999999988764

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.37  E-value=4.5e-11  Score=101.88  Aligned_cols=106  Identities=11%  Similarity=0.010  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------------ccCCCeEEEEecCCCHHHHHHHHhc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------------IQSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------------~~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|+.....              ....++.++.+|+++.+++.++++.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~   83 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAA-RDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK   83 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence            45899999999999999999999 68999999999764311              0113577889999999988877763


Q ss_pred             -------cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 -------LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 -------~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                             .|.++|.++....    ..+..+....+++|+.++.++++++...
T Consensus        84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~  135 (273)
T PRK08278         84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPH  135 (273)
T ss_pred             HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHH
Confidence                   4568888764322    1223344457889999999999998764

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.36  E-value=1e-10  Score=97.58  Aligned_cols=99  Identities=14%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-c-----c--cCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-A-----I--QSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      |+||||+|+||.+++++|+ +.|++|++++|+.... .     .  ...++.++++|+.|.+++..+++.       .|.
T Consensus         1 vlItGas~giG~~~a~~l~-~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLA-ADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899999999999999999 6899999998764321 1     1  124588899999999988777654       244


Q ss_pred             eeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHH
Q 042242           96 VTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAI  130 (303)
Q Consensus        96 V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~  130 (303)
                      ++|.++...    ...+..+....++.|+.++.++++++
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  118 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPC  118 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            666654321    12234455568999999999998875

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.36  E-value=1.2e-10  Score=98.35  Aligned_cols=107  Identities=9%  Similarity=0.022  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCccc---c---ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEIT---A---IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~---~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +.+|+++||||+  +.||++++++|+ +.|++|++++|+....   .   .+.....++++|++|.++++++++.     
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la-~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   86 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFR-ALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW   86 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc
Confidence            457899999998  599999999999 6899999999875321   1   1113356789999999988776644     


Q ss_pred             --cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 --LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 --~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                        .|.++|.++...        .+.+..+..+.+++|+.++..+++.+...
T Consensus        87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~  137 (258)
T PRK07533         87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPL  137 (258)
T ss_pred             CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence              355777765421        11233445568999999999999887654

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.36  E-value=8.4e-11  Score=95.36  Aligned_cols=93  Identities=13%  Similarity=0.132  Sum_probs=72.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc---cCceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~~~~~~  105 (303)
                      ++++||||+|.||++++++|. +. ++|++++|++.          .+++|+.|.++++++++.   +|.++|.++....
T Consensus         1 ~~vlItGas~giG~~la~~l~-~~-~~vi~~~r~~~----------~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~~~   68 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELS-KR-HEVITAGRSSG----------DVQVDITDPASIRALFEKVGKVDAVVSAAGKVHF   68 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHH-hc-CcEEEEecCCC----------ceEecCCChHHHHHHHHhcCCCCEEEECCCCCCC
Confidence            379999999999999999998 45 89999999753          357999999999888874   4557777654321


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          106 ----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       106 ----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                          .....+..+.+++|+.++.++++++...
T Consensus        69 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  100 (199)
T PRK07578         69 APLAEMTDEDFNVGLQSKLMGQVNLVLIGQHY  100 (199)
T ss_pred             CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1233444567899999999999988764

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.34  E-value=5.2e-11  Score=101.47  Aligned_cols=103  Identities=12%  Similarity=0.094  Sum_probs=76.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc---CCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ---SSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~---~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      |+++||||+|.||.++++.|+ +.|++|++++|++....     ..   ...+.++++|+.|.+++.+++..       +
T Consensus         1 k~vlItGas~giG~~la~~la-~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLA-AQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            479999999999999999999 68999999998764421     01   11244578999999887766654       4


Q ss_pred             CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           94 EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        94 ~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                      |.++|+++...    ...+..+....+++|+.++..+++++..
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  122 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVP  122 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            66888865422    1223444456899999999999998764

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.34  E-value=2.1e-10  Score=97.48  Aligned_cols=104  Identities=14%  Similarity=0.133  Sum_probs=71.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-cc-----cc---CCCeEEEEecCCCHHHH----HHHHh----
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-TA-----IQ---SSSYCFISCDLLNPLDI----KRKLT----   91 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-~~-----~~---~~~~~~~~~D~~~~~~l----~~~~~----   91 (303)
                      ++++||||+|+||++++++|+ +.|++|++++|+... ..     ..   ...+.++.+|++|.+++    ++.++    
T Consensus         2 ~~~lITGas~gIG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALH-QEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHH-hCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            589999999999999999999 689999998765422 11     11   12456788999998754    33332    


Q ss_pred             ---ccCceeEEeeccccc----CCh-----------HHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           92 ---LLEDVTHIFWVTWAS----QFA-----------SDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        92 ---~~~~V~~~~~~~~~~----~~~-----------~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                         .+|.++|.++.....    ...           ....+.+++|+.++..+++++...
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~  140 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQR  140 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence               356688887542211    111           123357899999999998876654

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.34  E-value=2.4e-11  Score=102.88  Aligned_cols=106  Identities=12%  Similarity=0.079  Sum_probs=78.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-c---cCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-I---QSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~---~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|+..... .   ...++.++.+|+.|.+++.++++.       +|.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   82 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFV-AEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC   82 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999 68999999999865432 1   123577889999999887776653       456


Q ss_pred             eeEEeecccc-----cCCh----HHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           96 VTHIFWVTWA-----SQFA----SDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        96 V~~~~~~~~~-----~~~~----~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      ++|+++....     ....    ....+.+++|+.++..+++++...
T Consensus        83 li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~  129 (262)
T TIGR03325        83 LIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPA  129 (262)
T ss_pred             EEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHH
Confidence            8888753211     1111    123457899999999999998764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.34  E-value=1.8e-10  Score=97.99  Aligned_cols=214  Identities=10%  Similarity=0.061  Sum_probs=122.1

Q ss_pred             CCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCccc---c-c-c-CCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEIT---A-I-Q-SSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~-~-~-~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      ++|++|||||++  .||+.++++|+ +.|++|++++|+....   . . . ......+++|++|.++++++++.      
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLA-AQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHH-hCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            468999999997  99999999999 6899999998864211   0 1 1 12234678999999988776654      


Q ss_pred             -cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 -LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 -~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                       +|.++|.++...        ...+..+....+++|+.++..+++++......-..++.+++....            .+
T Consensus        85 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~------------~~  152 (271)
T PRK06505         85 KLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGST------------RV  152 (271)
T ss_pred             CCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcc------------cc
Confidence             345777665422        122334445678999999998888776542111233333321110            00


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                      .    +.  ..+   |..+|....        ..... +++..+.||.+-.+... ...  ..........+  ..|+  
T Consensus       153 ~----~~--~~~---Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~-~~~--~~~~~~~~~~~--~~p~--  216 (271)
T PRK06505        153 M----PN--YNV---MGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGA-GIG--DARAIFSYQQR--NSPL--  216 (271)
T ss_pred             C----Cc--cch---hhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccc-cCc--chHHHHHHHhh--cCCc--
Confidence            0    00  112   555544332        11122 99999999998763211 100  00000000100  1121  


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                       +          .+..++|+|.++++++...... ..|+.+.+.++.
T Consensus       217 -~----------r~~~peeva~~~~fL~s~~~~~-itG~~i~vdgG~  251 (271)
T PRK06505        217 -R----------RTVTIDEVGGSALYLLSDLSSG-VTGEIHFVDSGY  251 (271)
T ss_pred             -c----------ccCCHHHHHHHHHHHhCccccc-cCceEEeecCCc
Confidence             1          1446789999999987643321 345777777764

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.33  E-value=1.9e-10  Score=105.04  Aligned_cols=107  Identities=18%  Similarity=0.076  Sum_probs=79.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      ..+++++||||+|.||..++++|. ..|++|++++|+.....    ....+..++.+|++|.++++++++.       +|
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~-~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLA-RDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            356899999999999999999998 68999999998543211    1122456788999999988776653       46


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      .|+|.++....    ..+.......+++|+.++.++++++...
T Consensus       287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  329 (450)
T PRK08261        287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAA  329 (450)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            68888764321    1233444458899999999999998763

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.33  E-value=5.5e-11  Score=113.79  Aligned_cols=159  Identities=17%  Similarity=0.207  Sum_probs=107.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      .+++|+++||||+|+||++++++|+ ..|++|++++|++....       ....++.++.+|+.|.++++++++.     
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~  446 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVA-EAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH  446 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            3457899999999999999999999 68999999999875432       1124578899999999998887763     


Q ss_pred             --cCceeEEeecccccC------ChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           93 --LEDVTHIFWVTWASQ------FASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 --~~~V~~~~~~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                        +|.++|.++......      ...+....+++|+.++.+++.++...  .....+++.+++...|...          
T Consensus       447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  516 (657)
T PRK07201        447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNA----------  516 (657)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC----------
Confidence              566888876432111      12344568899999998887776543  1123355555543333111          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeec
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~  206 (303)
                            +.  ..+   |+.+|...+         +. .+ +++++++|+.|..+
T Consensus       517 ------~~--~~~---Y~~sK~a~~~~~~~la~e~~~~~-i~v~~v~pg~v~T~  558 (657)
T PRK07201        517 ------PR--FSA---YVASKAALDAFSDVAASETLSDG-ITFTTIHMPLVRTP  558 (657)
T ss_pred             ------CC--cch---HHHHHHHHHHHHHHHHHHHHhhC-CcEEEEECCcCccc
Confidence                  00  123   676665544         11 23 99999999998764

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.32  E-value=6.1e-10  Score=92.69  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh---ccCceeEEeeccc
Q 042242           29 NVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT---LLEDVTHIFWVTW  104 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~---~~~~V~~~~~~~~  104 (303)
                      |+|+||||+|+||++++++|++. .++.|....|+.... ....++.++++|+++.++++++.+   +.|.++|+++...
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~   79 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLH   79 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCcccc
Confidence            48999999999999999999843 246676666654332 223567889999999988776544   4566888876542


Q ss_pred             cc----------CChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          105 AS----------QFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       105 ~~----------~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      ..          .+.......+++|+.+...+.+.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~  118 (235)
T PRK09009         80 TQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPK  118 (235)
T ss_pred             ccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            11          112233357899999998888887764

>PRK05855 short chain dehydrogenase; Validated

Probab=99.32  E-value=5.4e-11  Score=112.10  Aligned_cols=159  Identities=13%  Similarity=0.064  Sum_probs=107.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      .+..++++||||+|+||++++++|. ..|++|++++|+..+..     .  ...++.++.+|++|.+++.++++.     
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~  390 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFA-REGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH  390 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            4456899999999999999999999 68999999999865432     1  123578899999999998887765     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc-c--CCccEEEEeecccccccccCCCcccccCC
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR-A--KALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        +|.++|.++....    ..+..+....+++|+.++.++++++... .  ..-.+++.+|+...|....          
T Consensus       391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----------  460 (582)
T PRK05855        391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR----------  460 (582)
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC----------
Confidence              4568888765322    2234455568899999999988876554 1  1112455555433332110          


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLG  205 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G  205 (303)
                              ...+   |+.+|...+        ..... +++++++||.|-.
T Consensus       461 --------~~~~---Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t  500 (582)
T PRK05855        461 --------SLPA---YATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDT  500 (582)
T ss_pred             --------CCcH---HHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcc
Confidence                    0223   777666443        11122 9999999998865

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.32  E-value=1.8e-10  Score=98.85  Aligned_cols=105  Identities=10%  Similarity=0.002  Sum_probs=76.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC---------cccc-----c--cCCCeEEEEecCCCHHHHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP---------EITA-----I--QSSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~---------~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      ++|+++||||++.||+.++++|+ +.|++|++++|+.         ....     .  ...++.++.+|++|.+++.+++
T Consensus         5 ~~k~~lITGas~GIG~aia~~la-~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFA-AEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            46899999999999999999999 6899999988764         1111     1  1234678899999998887766


Q ss_pred             hc-------cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           91 TL-------LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        91 ~~-------~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                      +.       +|.++|.++...    ......+..+.+++|+.++..+++++..
T Consensus        84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  136 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAA  136 (286)
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHH
Confidence            43       345777765432    1223444556899999999888887754

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.32  E-value=2.5e-10  Score=96.49  Aligned_cols=215  Identities=13%  Similarity=0.090  Sum_probs=123.4

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCccc------c-c--cCCCeEEEEecCCCHHHHHHHHhc--
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEIT------A-I--QSSSYCFISCDLLNPLDIKRKLTL--   92 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~------~-~--~~~~~~~~~~D~~~~~~l~~~~~~--   92 (303)
                      +++|+++||||+  +.||++++++|+ +.|++|++..|+....      . .  ....+.++++|++|.++++++++.  
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~   82 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK   82 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence            356899999986  799999999999 6899998887643321      0 1  112456789999999988776654  


Q ss_pred             -----cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccc
Q 042242           93 -----LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEK  159 (303)
Q Consensus        93 -----~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~  159 (303)
                           .|.++|.++...        ...+..+..+.+++|+.++..+++++...-..-.+++.+++....          
T Consensus        83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~----------  152 (258)
T PRK07370         83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV----------  152 (258)
T ss_pred             HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc----------
Confidence                 345777765321        112234445688999999999888876542111344444331110          


Q ss_pred             ccCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          160 QVRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       160 ~~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                        .+.    +.  ...   |+.+|...+        ..... +++..+.||.+-.+........ ...  ...+..  ..
T Consensus       153 --~~~----~~--~~~---Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~-~~~--~~~~~~--~~  216 (258)
T PRK07370        153 --RAI----PN--YNV---MGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGI-LDM--IHHVEE--KA  216 (258)
T ss_pred             --cCC----cc--cch---hhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccc-hhh--hhhhhh--cC
Confidence              000    00  112   666555443        11223 9999999998876321100000 000  000000  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      |             +..+...+|+|.++++++..+... ..|+.+.+.++.
T Consensus       217 p-------------~~r~~~~~dva~~~~fl~s~~~~~-~tG~~i~vdgg~  253 (258)
T PRK07370        217 P-------------LRRTVTQTEVGNTAAFLLSDLASG-ITGQTIYVDAGY  253 (258)
T ss_pred             C-------------cCcCCCHHHHHHHHHHHhChhhcc-ccCcEEEECCcc
Confidence            1             112556789999998887644322 345777676653

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.32  E-value=5.7e-11  Score=98.16  Aligned_cols=103  Identities=13%  Similarity=0.191  Sum_probs=78.2

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc----cCceeEEeecc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL----LEDVTHIFWVT  103 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~----~~~V~~~~~~~  103 (303)
                      +++||||+|.||+++++.|+ +.|++|++++|+..+..  ....+++++++|+.|.++++++++.    .|.++|+++..
T Consensus         2 ~vlItGas~giG~~ia~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~   80 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFR-NDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS   80 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence            69999999999999999999 68999999999865432  1122467889999999998887763    56688876532


Q ss_pred             cc---------cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          104 WA---------SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       104 ~~---------~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +.         .....+..+.+++|+.++..+++++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  119 (223)
T PRK05884         81 WDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDH  119 (223)
T ss_pred             ccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11         0123344568999999999999998765

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.31  E-value=3.5e-10  Score=95.64  Aligned_cols=100  Identities=13%  Similarity=0.035  Sum_probs=70.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++++||||+|.||+.++++|+ +.|++|++++|++....     . ...++.++++|++|.++++++++.       +|.
T Consensus         1 m~vlItGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELL-KKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            479999999999999999999 68999999999865421     1 123577899999999988877753       455


Q ss_pred             eeEEeeccc------ccCChHHHHHHHHHHHHHHHHHHHH
Q 042242           96 VTHIFWVTW------ASQFASDMHKCCEQNKAMMCNALNA  129 (303)
Q Consensus        96 V~~~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~  129 (303)
                      ++|.++...      ......+..+.+.+|+.+...+...
T Consensus        80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~  119 (259)
T PRK08340         80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTL  119 (259)
T ss_pred             EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHH
Confidence            777765421      1122233334567777766555444

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.31  E-value=2.8e-10  Score=96.18  Aligned_cols=106  Identities=12%  Similarity=0.061  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc---CCCeEEEEecCCCHHHHHHHHhc---cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ---SSSYCFISCDLLNPLDIKRKLTL---LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~---~~~~~~~~~D~~~~~~l~~~~~~---~~~   95 (303)
                      .+|+++|||++|.||+.+++.|+ ..|++|++++|++.+..     ..   ..++.++.+|++|.+++.++++.   +|.
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFA-AEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999 68999999999865432     11   23577889999999998887764   445


Q ss_pred             eeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           96 VTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        96 V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      ++|+++...    ......+....+++|+.+...+++++...
T Consensus        85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  126 (259)
T PRK06125         85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPR  126 (259)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            777765421    12233444557899999998888887544

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.31  E-value=8.5e-11  Score=98.64  Aligned_cols=107  Identities=20%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCC--CHHHHHHHH----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLL--NPLDIKRKL----   90 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~--~~~~l~~~~----   90 (303)
                      ...+++|+||||+|+||.+++++|+ +.|++|++++|+..+..     .   ...++.++.+|++  +.+++.+++    
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~-~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYA-RHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            3457899999999999999999999 58999999999865421     1   1235667778886  455444433    


Q ss_pred             ---hccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           91 ---TLLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        91 ---~~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                         ..+|.|+|.++...     .........+.+++|+.++.++++++..
T Consensus        88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~  137 (247)
T PRK08945         88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLP  137 (247)
T ss_pred             HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHH
Confidence               24566888865421     1223444556899999999888888764

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.31  E-value=2.1e-11  Score=96.94  Aligned_cols=244  Identities=14%  Similarity=0.073  Sum_probs=140.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEe-ec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIF-WV  102 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~-~~  102 (303)
                      ...+|||||+-|.+|..++..|...-|-+ |+..+-.++.... ...-.++-.|+.|...+++.+-.  +|..+|.. ..
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V-~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfSALL  121 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANV-TDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFSALL  121 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhh-cccCCchhhhhhccccHHHhhcccccceeeeHHHHH
Confidence            35699999999999999999997445555 7777655443221 12223566899998888887743  34467762 11


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHH
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLE  182 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~  182 (303)
                      +...+..-..  +.++|+.|..|+++.++++.-++..-|++ |  .|       |.  ..|.....-..-..|...|+.+
T Consensus       122 SAvGE~NVpL--A~~VNI~GvHNil~vAa~~kL~iFVPSTI-G--AF-------GP--tSPRNPTPdltIQRPRTIYGVS  187 (366)
T KOG2774|consen  122 SAVGETNVPL--ALQVNIRGVHNILQVAAKHKLKVFVPSTI-G--AF-------GP--TSPRNPTPDLTIQRPRTIYGVS  187 (366)
T ss_pred             HHhcccCCce--eeeecchhhhHHHHHHHHcCeeEeecccc-c--cc-------CC--CCCCCCCCCeeeecCceeechh
Confidence            1122221122  57899999999999999873222111221 1  22       11  1111111111113456779998


Q ss_pred             HHHHH----Hhc-CC-cceEEecCCceeecCCCC--ccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          183 DLLKE----KLA-GK-VAWSVHRPGLLLGSSHRS--LYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       183 k~~~e----~~~-~~-~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      |.-+|    +.. .. +.+.++|.+.++...+-.  ..++  ..+.+.. +.+  |+- .++-.+    ...+.+-...|
T Consensus       188 KVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdy--a~A~f~~Al~~--gk~-tCylrp----dtrlpmmy~~d  258 (366)
T KOG2774|consen  188 KVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDY--AIAIFYDALQK--GKH-TCYLRP----DTRLPMMYDTD  258 (366)
T ss_pred             HHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchh--HHHHHHHHHHc--CCc-ccccCC----CccCceeehHH
Confidence            76555    332 33 889999998888742211  1122  2222222 322  211 111111    33344556667


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                      +-++++..+..+... -..++||+++ -..|-.|++..+.+.+
T Consensus       259 c~~~~~~~~~a~~~~-lkrr~ynvt~-~sftpee~~~~~~~~~  299 (366)
T KOG2774|consen  259 CMASVIQLLAADSQS-LKRRTYNVTG-FSFTPEEIADAIRRVM  299 (366)
T ss_pred             HHHHHHHHHhCCHHH-hhhheeeece-eccCHHHHHHHHHhhC
Confidence            777888776555432 2237999987 5678999999998865

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=99.31  E-value=3.1e-11  Score=95.39  Aligned_cols=239  Identities=13%  Similarity=0.079  Sum_probs=141.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHH-----HHhhcCC----CeEEEEecCCccccccCCCeEEEEecCCCHH-HHHHHHhccC
Q 042242           25 VDAKNVAVIFGVTGLVGKELAR-----RLISTAN----WKVYGIARKPEITAIQSSSYCFISCDLLNPL-DIKRKLTLLE   94 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~-----~L~~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~-~l~~~~~~~~   94 (303)
                      +.|+++.++-+.+|+|+..|..     ++- +.+    |+|++++|.+.+..     +++-..|..-.. ++.+..   +
T Consensus         9 ~~~sr~a~~~~~~g~i~~nl~~~~~~~H~t-~~~~a~~h~vtv~sR~pg~~r-----itw~el~~~Gip~sc~a~v---n   79 (315)
T KOG3019|consen    9 SGKSRDAVSNWSNGIIRENLGSETSCCHDT-NVHSADNHAVTVLSRSPGKAR-----ITWPELDFPGIPISCVAGV---N   79 (315)
T ss_pred             CCccccCCCCccccchhccccCcccccccC-CCCcccccceEEEecCCCCcc-----cccchhcCCCCceehHHHH---h
Confidence            4466778888999999988876     443 333    89999999987643     111111111100 111111   1


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS  174 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~  174 (303)
                      .+.+.+.......+..-..+.....+..+..+.+++..+-...+-++..+|..+|..+.       ..-++|+++.. ..
T Consensus        80 a~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~-------s~eY~e~~~~q-gf  151 (315)
T KOG3019|consen   80 AVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSE-------SQEYSEKIVHQ-GF  151 (315)
T ss_pred             hhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccc-------ccccccccccC-Ch
Confidence            11111111111112222223444455567888888887633334556667777885442       23366766543 22


Q ss_pred             ccchHHH---HHHHHHHh-cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          175 NNFYYVL---EDLLKEKL-AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       175 ~~~~y~~---~k~~~e~~-~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                      .   |..   .++..... .++ .+.+++|.|.|.|.+.+....++..+   .   -+.|-| .-.|      .++..++
T Consensus       152 d---~~srL~l~WE~aA~~~~~~~r~~~iR~GvVlG~gGGa~~~M~lpF---~---~g~GGP-lGsG------~Q~fpWI  215 (315)
T KOG3019|consen  152 D---ILSRLCLEWEGAALKANKDVRVALIRIGVVLGKGGGALAMMILPF---Q---MGAGGP-LGSG------QQWFPWI  215 (315)
T ss_pred             H---HHHHHHHHHHHHhhccCcceeEEEEEEeEEEecCCcchhhhhhhh---h---hccCCc-CCCC------Ceeeeee
Confidence            2   332   13333222 233 99999999999997655322222221   1   112445 2233      6778889


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      |++|++..+.++++++...    ++.|-+.+++.+..|+.+.++++++++.
T Consensus       216 Hv~DL~~li~~ale~~~v~----GViNgvAP~~~~n~Ef~q~lg~aL~Rp~  262 (315)
T KOG3019|consen  216 HVDDLVNLIYEALENPSVK----GVINGVAPNPVRNGEFCQQLGSALSRPS  262 (315)
T ss_pred             ehHHHHHHHHHHHhcCCCC----ceecccCCCccchHHHHHHHHHHhCCCc
Confidence            9999999999999998765    4899999999999999999999999874

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.30  E-value=5.1e-10  Score=94.69  Aligned_cols=215  Identities=8%  Similarity=0.043  Sum_probs=121.1

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCccc---c-c-cC-CCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEIT---A-I-QS-SSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~-~-~~-~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+++||||++  .||+++++.|+ +.|++|++.+|+....   . . .. ....++++|++|.++++++++.     
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la-~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAK-KHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW   84 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHH-HcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence            3468999999997  89999999998 6899999888863211   1 1 11 2234578999999988777753     


Q ss_pred             --cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           93 --LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 --~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                        +|.++|.++...        .+.+..+..+.+++|+.++..+++++.....+-.+++.+++....            .
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~------------~  152 (260)
T PRK06603         85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE------------K  152 (260)
T ss_pred             CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc------------c
Confidence              344566544321        122344555688999999999888765442111233333321110            0


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                      +.    +.  ...   |+.+|...+        ..... +++..+.||.+-.+........ ..  .......  ..|  
T Consensus       153 ~~----~~--~~~---Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~-~~--~~~~~~~--~~p--  216 (260)
T PRK06603        153 VI----PN--YNV---MGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDF-ST--MLKSHAA--TAP--  216 (260)
T ss_pred             CC----Cc--ccc---hhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCc-HH--HHHHHHh--cCC--
Confidence            00    00  112   555544332        11222 9999999998865311100000 00  0000111  112  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                 +-.+...+|+|.++++++...... ..|+.+.+.++.
T Consensus       217 -----------~~r~~~pedva~~~~~L~s~~~~~-itG~~i~vdgG~  252 (260)
T PRK06603        217 -----------LKRNTTQEDVGGAAVYLFSELSKG-VTGEIHYVDCGY  252 (260)
T ss_pred             -----------cCCCCCHHHHHHHHHHHhCccccc-CcceEEEeCCcc
Confidence                       112457789999999988653321 345777776664

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.30  E-value=4.3e-10  Score=95.76  Aligned_cols=215  Identities=11%  Similarity=0.045  Sum_probs=123.7

Q ss_pred             CCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCcc---cc---ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEI---TA---IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~---~~---~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+|+++||||+  +.||.++++.|+ +.|++|+++.|+...   ..   ........+++|++|.++++++++.      
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la-~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   87 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACR-AAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWG   87 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcC
Confidence            46899999997  899999999999 689999888876321   11   1112355789999999988877654      


Q ss_pred             -cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 -LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 -~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                       .|.++|.++...        ...+..+....+++|+.++..+++++...-.+-..++.+++...+            .+
T Consensus        88 ~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~------------~~  155 (272)
T PRK08159         88 KLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE------------KV  155 (272)
T ss_pred             CCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc------------cC
Confidence             344667665432        122334455688999999999998877652111233333321010            00


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                      .    |.  ...   |+.+|....        ..... +++..+.||.+..+... ...   .......... ...|   
T Consensus       156 ~----p~--~~~---Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~-~~~---~~~~~~~~~~-~~~p---  218 (272)
T PRK08159        156 M----PH--YNV---MGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAAS-GIG---DFRYILKWNE-YNAP---  218 (272)
T ss_pred             C----Cc--chh---hhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHh-cCC---cchHHHHHHH-hCCc---
Confidence            0    00  112   555554332        11223 99999999988652110 000   0000000000 0112   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                +..+..++|+|.++++++...... ..|..+.+.++..
T Consensus       219 ----------~~r~~~peevA~~~~~L~s~~~~~-itG~~i~vdgG~~  255 (272)
T PRK08159        219 ----------LRRTVTIEEVGDSALYLLSDLSRG-VTGEVHHVDSGYH  255 (272)
T ss_pred             ----------ccccCCHHHHHHHHHHHhCccccC-ccceEEEECCCce
Confidence                      112457789999999988654322 4457787777743

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.30  E-value=5.2e-10  Score=94.70  Aligned_cols=214  Identities=10%  Similarity=0.062  Sum_probs=121.3

Q ss_pred             CCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCcc---cc---ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEI---TA---IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~---~~---~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      ++|+++||||++  .||+++++.|+ +.|++|++++|+...   ..   ...+...++.+|++|.++++.+++.      
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            468999999985  89999999999 689999988886321   11   1123456788999999988877754      


Q ss_pred             -cCceeEEeecccc---------cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           93 -LEDVTHIFWVTWA---------SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 -~~~V~~~~~~~~~---------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                       +|.++|.++....         ..+..+....+++|+.++..+.+++.....+-..++.+++...+            .
T Consensus        84 ~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~------------~  151 (262)
T PRK07984         84 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------R  151 (262)
T ss_pred             CCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC------------C
Confidence             3457777654221         11233344578899999888888765431111233333321110            0


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                      +.    +.  ...   |+.+|...+        ..... +++..+.|+.+..+........ ..  .......  ..|  
T Consensus       152 ~~----~~--~~~---Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~-~~--~~~~~~~--~~p--  215 (262)
T PRK07984        152 AI----PN--YNV---MGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDF-RK--MLAHCEA--VTP--  215 (262)
T ss_pred             CC----CC--cch---hHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCch-HH--HHHHHHH--cCC--
Confidence            00    00  112   666555443        11222 9999999988865311100000 00  0000110  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                 ...+.+++|+|.++++++...... ..|..+.+.++.
T Consensus       216 -----------~~r~~~pedva~~~~~L~s~~~~~-itG~~i~vdgg~  251 (262)
T PRK07984        216 -----------IRRTVTIEDVGNSAAFLCSDLSAG-ISGEVVHVDGGF  251 (262)
T ss_pred             -----------CcCCCCHHHHHHHHHHHcCccccc-ccCcEEEECCCc
Confidence                       112567789999999987654322 345777776653

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.30  E-value=2.9e-10  Score=96.89  Aligned_cols=106  Identities=13%  Similarity=0.073  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCc---ccc-c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPE---ITA-I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~---~~~-~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+|+++||||+  +.||+.+++.|+ +.|++|++++|+..   ... .  +...-.++++|++|.++++++++.      
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la-~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACF-EQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46899999997  799999999999 68999999988742   111 1  111115788999999988776654      


Q ss_pred             -cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 -LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 -~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                       +|.++|.++...        ...+..+....+++|+.++..+.+++...
T Consensus        83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  132 (274)
T PRK08415         83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPL  132 (274)
T ss_pred             CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence             345677765421        12233445568999999999988887765

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.30  E-value=9.2e-10  Score=92.96  Aligned_cols=214  Identities=11%  Similarity=0.091  Sum_probs=121.6

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCccc---c-----ccCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEIT---A-----IQSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~-----~~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      +.+|+++||||+  +.||++++++|+ +.|++|++++|+....   .     ....++.++++|++|.++++++++.   
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   83 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLH-NAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE   83 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence            356899999997  899999999999 6899999988753211   1     1123577889999999988776653   


Q ss_pred             ----cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccc
Q 042242           93 ----LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 ----~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                          +|.++|.++...        ...+.......+++|+.++..+++++...-.+--+++.+++....           
T Consensus        84 ~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~-----------  152 (257)
T PRK08594         84 EVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE-----------  152 (257)
T ss_pred             hCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc-----------
Confidence                344666654321        112233344577899999888887776542111234433321110           


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                       .+.    +.  ...   |+.+|...+        ..... +++..+.|+.+-.+........ ...  ......  ..|
T Consensus       153 -~~~----~~--~~~---Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~-~~~--~~~~~~--~~p  217 (257)
T PRK08594        153 -RVV----QN--YNV---MGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGF-NSI--LKEIEE--RAP  217 (257)
T ss_pred             -cCC----CC--Cch---hHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccc-cHH--HHHHhh--cCC
Confidence             000    00  122   666555443        11122 9999999988876311000000 000  000000  111


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                                   +..+.+++++|.++++++...... ..|..+.+.++
T Consensus       218 -------------~~r~~~p~~va~~~~~l~s~~~~~-~tG~~~~~dgg  252 (257)
T PRK08594        218 -------------LRRTTTQEEVGDTAAFLFSDLSRG-VTGENIHVDSG  252 (257)
T ss_pred             -------------ccccCCHHHHHHHHHHHcCccccc-ccceEEEECCc
Confidence                         112457789999999887654321 34577766655

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.29  E-value=1.6e-10  Score=100.49  Aligned_cols=106  Identities=18%  Similarity=0.169  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      |+++++||||++.||.+++++|+ ..| ++|++++|+..+..     .  ....+.++.+|++|.++++++++.      
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~-~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   80 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALA-ATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGR   80 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            67899999999999999999999 688 99999999765431     1  123567889999999988776643      


Q ss_pred             -cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 -LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 -~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                       +|.++|.++....     ..+.......+++|+.++..++..+...
T Consensus        81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~  127 (314)
T TIGR01289        81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDD  127 (314)
T ss_pred             CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence             4557777654211     1123344557899999988887776553

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.26  E-value=1.9e-09  Score=90.94  Aligned_cols=209  Identities=13%  Similarity=0.022  Sum_probs=119.2

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCc-----------cc-c----cc--CCCeEEEEecCCCHHH
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPE-----------IT-A----IQ--SSSYCFISCDLLNPLD   85 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~-----------~~-~----~~--~~~~~~~~~D~~~~~~   85 (303)
                      .++|+|+||||+|  .||++++++|+ ..|++|++++|...           .. .    ..  ..++.++++|++|.++
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~-~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~   82 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELA-EAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA   82 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHH-HCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            3568999999995  89999999999 68999888754210           00 0    01  1256788999999998


Q ss_pred             HHHHHhc-------cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccc
Q 042242           86 IKRKLTL-------LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSL  152 (303)
Q Consensus        86 l~~~~~~-------~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~  152 (303)
                      +.++++.       .|.++|.++....    ..+.....+.+++|+.+...+...+....  ..-.+++.+++...+   
T Consensus        83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---  159 (256)
T PRK12859         83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ---  159 (256)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC---
Confidence            8777754       3457777654321    22333445678999999888866554331  112244444432111   


Q ss_pred             cCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHH
Q 042242          153 QGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA  223 (303)
Q Consensus       153 ~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  223 (303)
                               .+.      .+...   |+.+|...+     ..   ... ++++.++|+.+-.+.  ..    ...  ...
T Consensus       160 ---------~~~------~~~~~---Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~--~~----~~~--~~~  213 (256)
T PRK12859        160 ---------GPM------VGELA---YAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGW--MT----EEI--KQG  213 (256)
T ss_pred             ---------CCC------CCchH---HHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCC--CC----HHH--HHH
Confidence                     000      00122   666555443     11   122 999999999886521  11    010  000


Q ss_pred             HhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          224 VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      +..  ..|             +-.+...+|+|+++++++...... ..|+.+.+.++
T Consensus       214 ~~~--~~~-------------~~~~~~~~d~a~~~~~l~s~~~~~-~~G~~i~~dgg  254 (256)
T PRK12859        214 LLP--MFP-------------FGRIGEPKDAARLIKFLASEEAEW-ITGQIIHSEGG  254 (256)
T ss_pred             HHh--cCC-------------CCCCcCHHHHHHHHHHHhCccccC-ccCcEEEeCCC
Confidence            100  111             112456789999998887554321 34566666554

>PRK06484 short chain dehydrogenase; Validated

Probab=99.26  E-value=4.2e-10  Score=104.77  Aligned_cols=106  Identities=14%  Similarity=0.107  Sum_probs=80.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++|+++||||++.||..++++|. +.|++|++++|+.....    ....++.++++|++|+++++++++.       +|.
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFA-RAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999 68999999999866532    1123567789999999988777754       455


Q ss_pred             eeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           96 VTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        96 V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      ++|.++..      ....+..+..+.+++|+.++..+++++...
T Consensus        83 li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  126 (520)
T PRK06484         83 LVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRL  126 (520)
T ss_pred             EEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77776541      122334455568999999999999888765

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.25  E-value=1.3e-09  Score=92.27  Aligned_cols=215  Identities=13%  Similarity=0.077  Sum_probs=122.2

Q ss_pred             CCCCEEEEEcC--CChhHHHHHHHHhhcCCCeEEEEecCC---cccc---ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGV--TGLVGKELARRLISTANWKVYGIARKP---EITA---IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGa--tG~iG~~l~~~L~~~~g~~V~~~~r~~---~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+++||||  ++.||.+++++|+ +.|++|+++.|..   +...   .......++.+|++|+++++++++.     
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACK-REGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW   82 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHH-HCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh
Confidence            34689999996  6799999999999 6899998886542   1111   1112334688999999988777654     


Q ss_pred             --cCceeEEeecccc---------cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           93 --LEDVTHIFWVTWA---------SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 --~~~V~~~~~~~~~---------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                        .|.++|.++....         ..+..+..+.+++|+.++..+.+++...-.+-.+++.+++....            
T Consensus        83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~------------  150 (260)
T PRK06997         83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE------------  150 (260)
T ss_pred             CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc------------
Confidence              4457777654211         12233444578999999998988877652111234443321110            


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                      .+.    +.  ...   |+.+|....        ..... +++..+.|+.+-.+........ ..  ....+..  ..|+
T Consensus       151 ~~~----~~--~~~---Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~-~~--~~~~~~~--~~p~  216 (260)
T PRK06997        151 RVV----PN--YNT---MGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDF-GK--ILDFVES--NAPL  216 (260)
T ss_pred             cCC----CC--cch---HHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccch-hh--HHHHHHh--cCcc
Confidence            000    00  112   666555433        11222 9999999998865311100000 00  0001111  1121


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                   -.+..++|+|.++++++..+... ..|+++.+.++.
T Consensus       217 -------------~r~~~pedva~~~~~l~s~~~~~-itG~~i~vdgg~  251 (260)
T PRK06997        217 -------------RRNVTIEEVGNVAAFLLSDLASG-VTGEITHVDSGF  251 (260)
T ss_pred             -------------cccCCHHHHHHHHHHHhCccccC-cceeEEEEcCCh
Confidence                         12457789999999987654322 345777776653

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.25  E-value=9.1e-10  Score=93.21  Aligned_cols=215  Identities=12%  Similarity=0.077  Sum_probs=119.6

Q ss_pred             CCCCEEEEEcC--CChhHHHHHHHHhhcCCCeEEEEecCCcccc----c--cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGV--TGLVGKELARRLISTANWKVYGIARKPEITA----I--QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGa--tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~--~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+++||||  ++.||++++++|+ +.|++|++..|......    .  .......+++|+.|.++++++++.     
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACR-EQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW   82 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh
Confidence            35689999997  6799999999999 68999998876532111    1  112345789999999988777643     


Q ss_pred             --cCceeEEeecccc---------cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccc
Q 042242           93 --LEDVTHIFWVTWA---------SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 --~~~V~~~~~~~~~---------~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                        +|.++|.++....         ..........+++|+.++..+.+.+... ..+-.+++.+++...+           
T Consensus        83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~-----------  151 (261)
T PRK08690         83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAV-----------  151 (261)
T ss_pred             CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccc-----------
Confidence              4557777654321         1112233346788998888877766543 1111233333321111           


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                       .+.    +.  ...   |+.+|...+        ..... +++..+.||.+-.+........ ..  ....+..  ..|
T Consensus       152 -~~~----~~--~~~---Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~-~~--~~~~~~~--~~p  216 (261)
T PRK08690        152 -RAI----PN--YNV---MGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADF-GK--LLGHVAA--HNP  216 (261)
T ss_pred             -cCC----CC--ccc---chhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCch-HH--HHHHHhh--cCC
Confidence             000    10  112   555444332        11122 9999999998876311100000 00  0000110  112


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                   +..+..++|+|.++++++...... ..|+.+-+.++.
T Consensus       217 -------------~~r~~~peevA~~v~~l~s~~~~~-~tG~~i~vdgG~  252 (261)
T PRK08690        217 -------------LRRNVTIEEVGNTAAFLLSDLSSG-ITGEITYVDGGY  252 (261)
T ss_pred             -------------CCCCCCHHHHHHHHHHHhCcccCC-cceeEEEEcCCc
Confidence                         112567889999999988754332 345777666654

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.25  E-value=7.6e-11  Score=98.69  Aligned_cols=106  Identities=17%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~  104 (303)
                      ++++++||||+|+||++++++|+ ..|++|++++|++....  ........+.+|++|.+++.+.+..+|.++|.++...
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~~   91 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFR-AKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGINP   91 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHH-HCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccCC
Confidence            56899999999999999999999 68999999999762211  1111235678999999999998888888888876532


Q ss_pred             c-cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          105 A-SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       105 ~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      . ..+..+..+.+++|+.++..+++++...
T Consensus        92 ~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  121 (245)
T PRK12367         92 GGRQDPENINKALEINALSSWRLLELFEDI  121 (245)
T ss_pred             cCCCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2 2334555668999999999999987764

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.23  E-value=3.5e-09  Score=89.37  Aligned_cols=106  Identities=13%  Similarity=0.029  Sum_probs=76.1

Q ss_pred             CCCEEEEEcC--CChhHHHHHHHHhhcCCCeEEEEecCCc-cc-c----ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGV--TGLVGKELARRLISTANWKVYGIARKPE-IT-A----IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGa--tG~iG~~l~~~L~~~~g~~V~~~~r~~~-~~-~----~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+|+++||||  ++.||.+++++|+ +.|++|++++|+.. .. .    .....+.++++|+.|.++++++++.      
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la-~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQ-EQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHH-HCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999  8999999999999 68999999987642 11 1    1123567899999999988776643      


Q ss_pred             -cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 -LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 -~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                       +|.++|.++...        ...+.++..+.+++|+.++..+.+.+...
T Consensus        85 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~  134 (256)
T PRK07889         85 GLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPL  134 (256)
T ss_pred             CCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence             445677665431        12233444457899999998888887654

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.22  E-value=2.3e-10  Score=90.51  Aligned_cols=114  Identities=17%  Similarity=0.113  Sum_probs=80.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc----------cCCCeEEEEecCCCHHHHHHHHhcc----
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI----------QSSSYCFISCDLLNPLDIKRKLTLL----   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~----------~~~~~~~~~~D~~~~~~l~~~~~~~----   93 (303)
                      ++++|+||+|+||.+++++|+ ..|+ .|+++.|++.....          ...++.++.+|+.+.+++++.++..    
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~-~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLA-ERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARL   79 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHH-HhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            579999999999999999998 5665 68888887543210          1235677899999998887776543    


Q ss_pred             ---CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeec
Q 042242           94 ---EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTG  145 (303)
Q Consensus        94 ---~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~  145 (303)
                         |.++|.++....    .....+....++.|+.++..++++++..  +..+++.+++
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~ii~~ss  136 (180)
T smart00822       80 GPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDL--PLDFFVLFSS  136 (180)
T ss_pred             CCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccC--CcceEEEEcc
Confidence               568888764321    2223444567899999999999999754  2334444443

It uses NADPH to reduce the keto group to a hydroxy group.

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.22  E-value=4.9e-10  Score=97.57  Aligned_cols=159  Identities=15%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--c--CCCeEEEEecCCC--HHH---HHHHHhc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--Q--SSSYCFISCDLLN--PLD---IKRKLTL   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~--~~~~~~~~~D~~~--~~~---l~~~~~~   92 (303)
                      .+++++||||||.||++++++|+ +.|++|++++|++++..     .  .  ..++..+.+|+.+  .+.   +.+.+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La-~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLA-RKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            46899999999999999999999 68999999999876532     1  1  1246677899985  233   3334444


Q ss_pred             cC--ceeEEeecccc------cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           93 LE--DVTHIFWVTWA------SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ~~--~V~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                      .|  .++|.++....      +.+..+..+.+++|+.++..+.+++...  ..+-.+++.+++...+..+        . 
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~--------~-  201 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP--------S-  201 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC--------C-
Confidence            44  47777664321      2233444568999999999998887653  1222345555443222100        0 


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLG  205 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G  205 (303)
                           .|.  ...   |+.+|...+        ..... ++++.++||.+-.
T Consensus       202 -----~p~--~~~---Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T  243 (320)
T PLN02780        202 -----DPL--YAV---YAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVAT  243 (320)
T ss_pred             -----Ccc--chH---HHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceec
Confidence                 000  123   777666544        11222 9999999998876

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.21  E-value=1.9e-10  Score=102.28  Aligned_cols=108  Identities=10%  Similarity=0.119  Sum_probs=84.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      +.++|+|+||||+|+||++++++|. +.|++|++++|++.+...    ...++..+.+|+.|.+++.+.+.++|.++|.+
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La-~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELH-QQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            4457899999999999999999998 689999999998654321    12246678899999999999999888888876


Q ss_pred             eccc-ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242          101 WVTW-ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus       101 ~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +... ...+.++..+.+++|+.++.++++++...
T Consensus       254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~  287 (406)
T PRK07424        254 GINVHGERTPEAINKSYEVNTFSAWRLMELFFTT  287 (406)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432 23344445568999999999999998764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.17  E-value=1.2e-09  Score=91.34  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=82.5

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCC-CeEEEEecCCCHHHHHHHHh----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSS-SYCFISCDLLNPLDIKRKLT----   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~-~~~~~~~D~~~~~~l~~~~~----   91 (303)
                      ...+|.|+|||||..||.+++..|. +.|..++.+.|+.....        .... ++.++++|++|.+++.+.++    
T Consensus         9 ~~~~kvVvITGASsGIG~~lA~~la-~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~   87 (282)
T KOG1205|consen    9 RLAGKVVLITGASSGIGEALAYELA-KRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR   87 (282)
T ss_pred             HhCCCEEEEeCCCcHHHHHHHHHHH-hCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999 78988888877654431        1122 59999999999998886653    


Q ss_pred             ---ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecc
Q 042242           92 ---LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGM  146 (303)
Q Consensus        92 ---~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~  146 (303)
                         ++|+++|-|+....    .....+..+.+++|+.|+..+.+++...  ..+--|++.+++.
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSi  151 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSI  151 (282)
T ss_pred             hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecc
Confidence               33444444444321    1123344458999999998888887765  1122455555543

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.12  E-value=4.3e-09  Score=87.14  Aligned_cols=105  Identities=4%  Similarity=-0.017  Sum_probs=73.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh--------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT--------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~--------   91 (303)
                      ++|+++||||++.||+.++++|+ +.|++|+++.|+..+..     .  ...++..+.+|+.|.++++++++        
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la-~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFA-RLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999 68999999999876432     1  12346678899999998876654        


Q ss_pred             ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           92 LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        92 ~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                      .+|.++|.++...     .+.+..+..+.+++|+.++..++..+..
T Consensus        83 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (227)
T PRK08862         83 APDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAE  128 (227)
T ss_pred             CCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3455777764211     1122233334667788877766665543

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.11  E-value=1.5e-09  Score=82.66  Aligned_cols=155  Identities=18%  Similarity=0.183  Sum_probs=96.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      .++.++|.||||..|+.+++.++....++ |+++.|++..-......+.....|....+++...+++.|+.+++.++.-.
T Consensus        17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTRg   96 (238)
T KOG4039|consen   17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTRG   96 (238)
T ss_pred             hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccccceeeeEEechHHHHHHHhhhcCCceEEEeeccccc
Confidence            45789999999999999999999666777 99999996432233445666778988888888899998866666443221


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHH----
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVL----  181 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~----  181 (303)
                      ... .+-  .+++.-.-...+.+++++.  ..+++...|+...                +.++       +|.|.+    
T Consensus        97 kaG-adg--fykvDhDyvl~~A~~AKe~--Gck~fvLvSS~GA----------------d~sS-------rFlY~k~KGE  148 (238)
T KOG4039|consen   97 KAG-ADG--FYKVDHDYVLQLAQAAKEK--GCKTFVLVSSAGA----------------DPSS-------RFLYMKMKGE  148 (238)
T ss_pred             ccc-cCc--eEeechHHHHHHHHHHHhC--CCeEEEEEeccCC----------------Cccc-------ceeeeeccch
Confidence            111 111  3333334444566666654  3455555553211                1111       222443    


Q ss_pred             -HHHHHHHhcCCcceEEecCCceeecCCCCc
Q 042242          182 -EDLLKEKLAGKVAWSVHRPGLLLGSSHRSL  211 (303)
Q Consensus       182 -~k~~~e~~~~~~~~~ilRp~~v~G~~~~~~  211 (303)
                       |+-+.|..-  -+++|+|||.+.|..+.+.
T Consensus       149 vE~~v~eL~F--~~~~i~RPG~ll~~R~esr  177 (238)
T KOG4039|consen  149 VERDVIELDF--KHIIILRPGPLLGERTESR  177 (238)
T ss_pred             hhhhhhhccc--cEEEEecCcceeccccccc
Confidence             333333321  4789999999999766543

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.08  E-value=7.2e-09  Score=89.66  Aligned_cols=107  Identities=16%  Similarity=0.067  Sum_probs=74.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc----------cc-----cc--CCCeEEEEecCCCHHHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI----------TA-----IQ--SSSYCFISCDLLNPLDIKR   88 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~----------~~-----~~--~~~~~~~~~D~~~~~~l~~   88 (303)
                      +.+|+++||||++.||.+++++|+ ..|++|++++|+..+          ..     ..  ...+.++++|+.|.+++++
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELG-AAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence            346899999999999999999999 689999999997421          10     01  1246778999999998877


Q ss_pred             HHhc-------cCceeEEe-eccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           89 KLTL-------LEDVTHIF-WVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        89 ~~~~-------~~~V~~~~-~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +++.       +|.++|.+ +...        ......+..+.+++|+.+...+++++...
T Consensus        85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~  145 (305)
T PRK08303         85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPL  145 (305)
T ss_pred             HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6654       34466665 3210        01122333457889999988888777654

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.08  E-value=3.4e-09  Score=89.43  Aligned_cols=104  Identities=16%  Similarity=0.095  Sum_probs=73.7

Q ss_pred             EEEEEcCCChhHHHHHHHHhh---cCCCeEEEEecCCcccc-----cc----CCCeEEEEecCCCHHHHHHHHhcc----
Q 042242           30 VAVIFGVTGLVGKELARRLIS---TANWKVYGIARKPEITA-----IQ----SSSYCFISCDLLNPLDIKRKLTLL----   93 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~---~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~~~----   93 (303)
                      .++||||++.||.+++++|++   ..|++|++++|+.....     ..    ..++.++.+|+.|.++++++++.+    
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999983   26999999999865422     11    125778899999999887776543    


Q ss_pred             -------CceeEEeecccc-----c--CChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           94 -------EDVTHIFWVTWA-----S--QFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        94 -------~~V~~~~~~~~~-----~--~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                             +.++|.++....     .  .......+.+++|+.++..+.+.+...
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~  135 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKA  135 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                   236666543211     0  112344468999999988888776654

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=5.5e-09  Score=91.46  Aligned_cols=114  Identities=17%  Similarity=0.213  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-c-----cCCCeEEEEecCCCHHH-HHHHHhccC--cee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-I-----QSSSYCFISCDLLNPLD-IKRKLTLLE--DVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~-----~~~~~~~~~~D~~~~~~-l~~~~~~~~--~V~   97 (303)
                      ...+|+|+||||.+|+.+++.|+ +.|+.|+++.|+..+.. .     ...+...+..|.....+ +......+.  .++
T Consensus        78 ~~~~VlVvGatG~vG~~iv~~ll-krgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~  156 (411)
T KOG1203|consen   78 KPTTVLVVGATGKVGRRIVKILL-KRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVI  156 (411)
T ss_pred             CCCeEEEecCCCchhHHHHHHHH-HCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhcccccee
Confidence            45699999999999999999999 78999999999987643 1     13345555565554433 333333321  122


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEee
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQT  144 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s  144 (303)
                      ...+........ +-.....+...|+.+++++|+.++  +.|++..+
T Consensus       157 v~~~~ggrp~~e-d~~~p~~VD~~g~knlvdA~~~aG--vk~~vlv~  200 (411)
T KOG1203|consen  157 VIKGAGGRPEEE-DIVTPEKVDYEGTKNLVDACKKAG--VKRVVLVG  200 (411)
T ss_pred             EEecccCCCCcc-cCCCcceecHHHHHHHHHHHHHhC--CceEEEEE
Confidence            222221122111 111134678899999999998773  44554443

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=6.7e-09  Score=81.30  Aligned_cols=166  Identities=16%  Similarity=0.110  Sum_probs=106.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhc----c---Cce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTL----L---EDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~----~---~~V   96 (303)
                      .+.+||||||+..||..+++++. ..|.+|++..|+.....   ..-+.+....+|+.|.+++++.+..    .   +++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~-elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFL-ELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHH-HhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            46799999999999999999999 68889999999987643   3457888899999998866554432    2   347


Q ss_pred             eEEeeccc------ccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCC-ccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           97 THIFWVTW------ASQFASDMHKCCEQNKAMMCNALNAILPR-AKA-LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        97 ~~~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      ++.|+.-.      ......+..+.+++|+.++..+..++..+ ..+ -..++-.||.-.+.             -.+..
T Consensus        83 iNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv-------------Pm~~~  149 (245)
T COG3967          83 INNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV-------------PMAST  149 (245)
T ss_pred             eecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC-------------ccccc
Confidence            77766522      11122334567899999999999988877 222 12222223211110             01111


Q ss_pred             CCCCCCccchHHHHHHHHHHhcCC-cceEEecCCceeec
Q 042242          169 PRVSKSNNFYYVLEDLLKEKLAGK-VAWSVHRPGLLLGS  206 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e~~~~~-~~~~ilRp~~v~G~  206 (303)
                      |.+...-......+..++++.+.. +++.-+-|+.|-..
T Consensus       150 PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         150 PVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             ccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence            111011111123366677777665 88888899988874

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.01  E-value=6.4e-08  Score=75.18  Aligned_cols=217  Identities=15%  Similarity=0.141  Sum_probs=125.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccC-CCeEEEEecCCCHHHHHHHHhcc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQS-SSYCFISCDLLNPLDIKRKLTLL------   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~-~~~~~~~~D~~~~~~l~~~~~~~------   93 (303)
                      .|++.++||||+..||+++++.|. ..|++|.+.+++.....     +.. .+-..+.+|+.+..+++..|++.      
T Consensus        12 ~~sk~~~vtGg~sGIGrAia~~la-~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~   90 (256)
T KOG1200|consen   12 LMSKVAAVTGGSSGIGRAIAQLLA-KKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGT   90 (256)
T ss_pred             HhcceeEEecCCchHHHHHHHHHH-hcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence            367899999999999999999998 79999999998866432     111 23446789999988766655432      


Q ss_pred             -CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc-----cC--CccEEEEeecccccccccCCCccccc
Q 042242           94 -EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR-----AK--ALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        94 -~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~--~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                       ++++++|+..-    ...+.+++.+.+.+|+.+...+..++.+.     +.  .++.++++-|-.   +.      ...
T Consensus        91 psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGki---GN------~GQ  161 (256)
T KOG1200|consen   91 PSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKI---GN------FGQ  161 (256)
T ss_pred             CcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccc---cc------ccc
Confidence             34777766532    23345555568999999988777776554     11  344444332210   10      001


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHH-HHHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLL-KEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~-~e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                      ..|.....-.       -+-+|.+ +|..+..+++..+.|+.|-.|-+..- +  +..  ...+..  ..|+-       
T Consensus       162 tnYAAsK~Gv-------IgftktaArEla~knIrvN~VlPGFI~tpMT~~m-p--~~v--~~ki~~--~iPmg-------  220 (256)
T KOG1200|consen  162 TNYAASKGGV-------IGFTKTAARELARKNIRVNVVLPGFIATPMTEAM-P--PKV--LDKILG--MIPMG-------  220 (256)
T ss_pred             hhhhhhcCce-------eeeeHHHHHHHhhcCceEeEeccccccChhhhhc-C--HHH--HHHHHc--cCCcc-------
Confidence            1111000000       1112333 33333339999999998887433211 0  111  111221  23322       


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                            .+-+++++|...++++ ++......|..+.++++
T Consensus       221 ------r~G~~EevA~~V~fLA-S~~ssYiTG~t~evtGG  253 (256)
T KOG1200|consen  221 ------RLGEAEEVANLVLFLA-SDASSYITGTTLEVTGG  253 (256)
T ss_pred             ------ccCCHHHHHHHHHHHh-ccccccccceeEEEecc
Confidence                  2457889998888887 44333244567877776

>PRK05599 hypothetical protein; Provisional

Probab=99.01  E-value=2.2e-08  Score=84.03  Aligned_cols=100  Identities=16%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc---CCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ---SSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~---~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      |+++||||++.||..++++|. + |++|++++|++.+..     ..   ...+.++++|+.|.++++++++.       .
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-H-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999997 5 899999999865432     11   12477889999999888776543       3


Q ss_pred             CceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHH
Q 042242           94 EDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAI  130 (303)
Q Consensus        94 ~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~  130 (303)
                      |.++|.++.....    .......+..++|+.+...++..+
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~  119 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVL  119 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHH
Confidence            4466665432111    112222245677887777665554

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.99  E-value=1.1e-08  Score=85.03  Aligned_cols=127  Identities=12%  Similarity=0.071  Sum_probs=89.8

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-----c-CCCeEEEEecCCCHHHHHHHHhcc--
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-----Q-SSSYCFISCDLLNPLDIKRKLTLL--   93 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-----~-~~~~~~~~~D~~~~~~l~~~~~~~--   93 (303)
                      ...+..++.||||||++.+|+.++.+++ +.|..+.+.+.++.....     . ...+..+.+|+++.+.+.+..+.+  
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa-~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFA-KRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHH-HhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH
Confidence            3444567899999999999999999999 688888888887665421     1 125788999999999877666543  


Q ss_pred             -----CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeeccccc
Q 042242           94 -----EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHY  149 (303)
Q Consensus        94 -----~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y  149 (303)
                           +.+++-|+...    .+.++++-...+++|+.+.....++....  ..+--|++.+++...+
T Consensus       111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~  177 (300)
T KOG1201|consen  111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGL  177 (300)
T ss_pred             hcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcc
Confidence                 22444444432    23345566678999999998888887765  3455677777664444

>PLN00015 protochlorophyllide reductase

Probab=98.97  E-value=2e-08  Score=87.16  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             EEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc-------cCce
Q 042242           32 VIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL-------LEDV   96 (303)
Q Consensus        32 lVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V   96 (303)
                      +||||++.||.+++++|+ ..| ++|++++|+.....     .  ....+.++.+|+.|.++++++++.       +|.+
T Consensus         1 lITGas~GIG~aia~~l~-~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALA-ETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            699999999999999999 678 99999999765431     1  123577889999999988776653       3557


Q ss_pred             eEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           97 THIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        97 ~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +|.++....     ..+.......+++|+.++..+++.+...
T Consensus        80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~  121 (308)
T PLN00015         80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDD  121 (308)
T ss_pred             EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            777654211     1133444568999999988887776554

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=98.96  E-value=1.2e-08  Score=80.19  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=81.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC--Ccccc-------ccCCCeEEEEecCCCHHHHHHHHhcc------
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARK--PEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL------   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~--~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~------   93 (303)
                      |+|+||||++.||..++++|++..++.|+++.|+  .+...       ....++.++++|+++.++++++++.+      
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999999995446678888888  22111       12357889999999999888777654      


Q ss_pred             -CceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeec
Q 042242           94 -EDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTG  145 (303)
Q Consensus        94 -~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~  145 (303)
                       |.++|+++.....    ...+...+.++.|+.+...+.+++...  .-.+++.+++
T Consensus        81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~g~iv~~sS  135 (167)
T PF00106_consen   81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQ--GGGKIVNISS  135 (167)
T ss_dssp             ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHH--TTEEEEEEEE
T ss_pred             ccccccccccccccccccccchhhhhccccccceeeeeeehheec--cccceEEecc
Confidence             3477776553311    123444568999999999999998872  2344444443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=98.90  E-value=2.7e-08  Score=83.14  Aligned_cols=204  Identities=16%  Similarity=0.107  Sum_probs=119.5

Q ss_pred             cCC--ChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc--------cCceeE
Q 042242           35 GVT--GLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL--------LEDVTH   98 (303)
Q Consensus        35 Gat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~--------~~~V~~   98 (303)
                      |++  +.||+.+++.|+ +.|++|++++|+..+..      ....+..++.+|+.+.++++++++.        +|.++|
T Consensus         1 g~~~s~GiG~aia~~l~-~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~   79 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALA-EEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN   79 (241)
T ss_dssp             STSSTSHHHHHHHHHHH-HTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred             CCCCCCChHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence            566  999999999999 78999999999987621      1122355799999999987776543        345677


Q ss_pred             Eeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           99 IFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        99 ~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .++....        +.+..+....++.|+.++..+++++.+...+-..++.+++....            .+       
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~------------~~-------  140 (241)
T PF13561_consen   80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQ------------RP-------  140 (241)
T ss_dssp             EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGT------------SB-------
T ss_pred             cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhc------------cc-------
Confidence            6554432        11234445688999999999998886651111233333321110            00       


Q ss_pred             CCCCccchHHHHHHHHH---------Hhc-CCcceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchh
Q 042242          171 VSKSNNFYYVLEDLLKE---------KLA-GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTRE  239 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~~-~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~  239 (303)
                      .|.+.  .|+..|...+         +.. ..+++..+.||.+..+...    .......... ..+  ..|        
T Consensus       141 ~~~~~--~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~----~~~~~~~~~~~~~~--~~p--------  204 (241)
T PF13561_consen  141 MPGYS--AYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTE----RIPGNEEFLEELKK--RIP--------  204 (241)
T ss_dssp             STTTH--HHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHH----HHHTHHHHHHHHHH--HST--------
T ss_pred             Cccch--hhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchh----ccccccchhhhhhh--hhc--------
Confidence            00111  2665444333         333 2299999999988863211    0010000111 111  112        


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                           +-.+..++|+|.++++++..... ...|+.+.+.+|
T Consensus       205 -----l~r~~~~~evA~~v~fL~s~~a~-~itG~~i~vDGG  239 (241)
T PF13561_consen  205 -----LGRLGTPEEVANAVLFLASDAAS-YITGQVIPVDGG  239 (241)
T ss_dssp             -----TSSHBEHHHHHHHHHHHHSGGGT-TGTSEEEEESTT
T ss_pred             -----cCCCcCHHHHHHHHHHHhCcccc-CccCCeEEECCC
Confidence                 11245788999999988865522 245688877765

...

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=98.90  E-value=2.1e-07  Score=80.20  Aligned_cols=215  Identities=12%  Similarity=0.024  Sum_probs=116.7

Q ss_pred             CCCCEEEEEcC--CChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----------cC-----CCeEEEEecC--C
Q 042242           26 DAKNVAVIFGV--TGLVGKELARRLISTANWKVYGIARKPEITA-----I----------QS-----SSYCFISCDL--L   81 (303)
Q Consensus        26 ~~~~~vlVtGa--tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----------~~-----~~~~~~~~D~--~   81 (303)
                      +++|++|||||  +..||.++++.|. ..|.+|++ .|+.....     .          ..     .....+.+|+  .
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la-~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   84 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALA-AAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD   84 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHH-HCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence            57899999999  7999999999999 68999887 54322110     0          00     1135677888  3


Q ss_pred             CH------------------HHHHHHHhc-------cCceeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHH
Q 042242           82 NP------------------LDIKRKLTL-------LEDVTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAI  130 (303)
Q Consensus        82 ~~------------------~~l~~~~~~-------~~~V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~  130 (303)
                      ++                  ++++++++.       +|.++|.++..      ....+..+..+.+++|+.++..+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~  164 (303)
T PLN02730         85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF  164 (303)
T ss_pred             ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            22                  245444432       45677776321      122334455568999999999998887


Q ss_pred             hhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCC-cceEEecC
Q 042242          131 LPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGK-VAWSVHRP  200 (303)
Q Consensus       131 ~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~-~~~~ilRp  200 (303)
                      ...-..--+++.+++.....            +.    +.. ...   |..+|...+         +.... +++..+.|
T Consensus       165 ~p~m~~~G~II~isS~a~~~------------~~----p~~-~~~---Y~asKaAl~~l~~~la~El~~~~gIrVn~V~P  224 (303)
T PLN02730        165 GPIMNPGGASISLTYIASER------------II----PGY-GGG---MSSAKAALESDTRVLAFEAGRKYKIRVNTISA  224 (303)
T ss_pred             HHHHhcCCEEEEEechhhcC------------CC----CCC-chh---hHHHHHHHHHHHHHHHHHhCcCCCeEEEEEee
Confidence            76521113344443311110            00    000 012   666555443         22213 99999999


Q ss_pred             CceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       201 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      |.+-.+-... ......  .......  ..|             +..+...++++.++++++...... ..|+.+.+.++
T Consensus       225 G~v~T~~~~~-~~~~~~--~~~~~~~--~~p-------------l~r~~~peevA~~~~fLaS~~a~~-itG~~l~vdGG  285 (303)
T PLN02730        225 GPLGSRAAKA-IGFIDD--MIEYSYA--NAP-------------LQKELTADEVGNAAAFLASPLASA-ITGATIYVDNG  285 (303)
T ss_pred             CCccCchhhc-ccccHH--HHHHHHh--cCC-------------CCCCcCHHHHHHHHHHHhCccccC-ccCCEEEECCC
Confidence            8886632111 000000  0000000  111             011457789999999988644321 34566766655


Q ss_pred             C
Q 042242          281 P  281 (303)
Q Consensus       281 ~  281 (303)
                      .
T Consensus       286 ~  286 (303)
T PLN02730        286 L  286 (303)
T ss_pred             c
Confidence            3

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=98.87  E-value=1.2e-07  Score=75.59  Aligned_cols=105  Identities=18%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe-cCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhccC----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIA-RKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLLE----   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~-r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~~----   94 (303)
                      .+++|+||||+..||.-|+++|++..|.++++-. |+++++.       ...+++++++.|+++.+++...++++.    
T Consensus         2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg   81 (249)
T KOG1611|consen    2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG   81 (249)
T ss_pred             CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence            3567999999999999999999977888855555 4455522       136799999999999999888776543    


Q ss_pred             -----ceeEEeecc--c---ccCChHHHHHHHHHHHHHHHHHHHHHh
Q 042242           95 -----DVTHIFWVT--W---ASQFASDMHKCCEQNKAMMCNALNAIL  131 (303)
Q Consensus        95 -----~V~~~~~~~--~---~~~~~~~~~~~~~~n~~~~~~ll~~~~  131 (303)
                           .+++-++..  +   ...++....+.+++|..++.-+..++.
T Consensus        82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~l  128 (249)
T KOG1611|consen   82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFL  128 (249)
T ss_pred             cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHH
Confidence                 133333321  1   122233445688999988665555443

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=98.86  E-value=5.2e-07  Score=76.37  Aligned_cols=222  Identities=17%  Similarity=0.053  Sum_probs=124.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-----cCCCeEEEEecCCCHHHHHHHH----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-----QSSSYCFISCDLLNPLDIKRKL----   90 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-----~~~~~~~~~~D~~~~~~l~~~~----   90 (303)
                      ...+|+++|||++..||++++..|. +.|.+|++.+|+.+...     +     ....+..+.+|+.+.+..++.+    
T Consensus         5 ~l~gkvalVTG~s~GIG~aia~~la-~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~   83 (270)
T KOG0725|consen    5 RLAGKVALVTGGSSGIGKAIALLLA-KAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV   83 (270)
T ss_pred             cCCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence            4567999999999999999999999 78999999999877531     1     1235778999999876544433    


Q ss_pred             hc----cCceeEEeeccc-----ccCChHHHHHHHHHHHHH-HHHHHHHHhhcc--CCccEEEEeecccccccccCCCcc
Q 042242           91 TL----LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAM-MCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        91 ~~----~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~-~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                      +.    .|.+++-++...     .+.+.+.....+++|+.| ...+..++..+.  .+--.+..+++...+...      
T Consensus        84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~------  157 (270)
T KOG0725|consen   84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG------  157 (270)
T ss_pred             HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC------
Confidence            32    454555544433     223344555688999994 666666666551  122233333322121000      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  228 (303)
                                  . ..+ ..|+.+|....         .. .+ +++..+-|+.|..+........ .....   ..+..
T Consensus       158 ------------~-~~~-~~Y~~sK~al~~ltr~lA~El~~~g-IRvN~v~PG~i~T~~~~~~~~~-~~~~~---~~~~~  218 (270)
T KOG0725|consen  158 ------------P-GSG-VAYGVSKAALLQLTRSLAKELAKHG-IRVNSVSPGLVKTSLRAAGLDD-GEMEE---FKEAT  218 (270)
T ss_pred             ------------C-CCc-ccchhHHHHHHHHHHHHHHHHhhcC-cEEEEeecCcEeCCcccccccc-chhhH---Hhhhh
Confidence                        0 110 12666554333         22 23 9999999999988531111000 00000   11100


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      .....         ...-.+..++++|.+...++..... ...|+.+.+.++..
T Consensus       219 ~~~~~---------~p~gr~g~~~eva~~~~fla~~~as-yitG~~i~vdgG~~  262 (270)
T KOG0725|consen  219 DSKGA---------VPLGRVGTPEEVAEAAAFLASDDAS-YITGQTIIVDGGFT  262 (270)
T ss_pred             ccccc---------cccCCccCHHHHHHhHHhhcCcccc-cccCCEEEEeCCEE
Confidence            00001         0111245667888888887766543 24456666665543

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.82  E-value=6.9e-08  Score=76.08  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=76.9

Q ss_pred             CCCEEEEEcC-CChhHHHHHHHHhhcCCCeEEEEecCCcccc-c-cCCCeEEEEecCCCHHHHHHHHhccCc-----eeE
Q 042242           27 AKNVAVIFGV-TGLVGKELARRLISTANWKVYGIARKPEITA-I-QSSSYCFISCDLLNPLDIKRKLTLLED-----VTH   98 (303)
Q Consensus        27 ~~~~vlVtGa-tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~-~~~~~~~~~~D~~~~~~l~~~~~~~~~-----V~~   98 (303)
                      ..|+|||||+ +|.||.+|++.+. +.||.|++..|+-+.-. + ...++...+.|+.+++.+..+..+..+     +..
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~-~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFA-RNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHH-hCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence            3578998875 5999999999998 79999999999876543 2 256789999999999988776654321     222


Q ss_pred             E---eecc--c--ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           99 I---FWVT--W--ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        99 ~---~~~~--~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +   |+.+  +  .+......++.+++|+.|..++.+++...
T Consensus        85 L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~  126 (289)
T KOG1209|consen   85 LYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHF  126 (289)
T ss_pred             EEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHH
Confidence            2   3221  1  23334455578999999988888877643

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=98.81  E-value=2.4e-07  Score=77.58  Aligned_cols=121  Identities=17%  Similarity=0.185  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----cc-CCCeEEEEecCCCHHHHHHHHhccC----
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQ-SSSYCFISCDLLNPLDIKRKLTLLE----   94 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~-~~~~~~~~~D~~~~~~l~~~~~~~~----   94 (303)
                      .+..+|-|||||+--..|+.++.+|. +.|+.|++-+..++...    .. .++...++.|++++++++++.+-+.    
T Consensus        25 ~~~~~k~VlITGCDSGfG~~LA~~L~-~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~  103 (322)
T KOG1610|consen   25 DSLSDKAVLITGCDSGFGRLLAKKLD-KKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLG  103 (322)
T ss_pred             cccCCcEEEEecCCcHHHHHHHHHHH-hcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcc
Confidence            34467889999999999999999998 79999999997665532    22 6788999999999999988775321    


Q ss_pred             -----ceeEEeecc-cccCC----hHHHHHHHHHHHHHHHHHHHHHhhc----cCCccEEEEeec
Q 042242           95 -----DVTHIFWVT-WASQF----ASDMHKCCEQNKAMMCNALNAILPR----AKALKHVSLQTG  145 (303)
Q Consensus        95 -----~V~~~~~~~-~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~~~~~~s~  145 (303)
                           .++|.|+.. .....    .++.+..+++|+.|+.++..++...    -.+++.+++.+|
T Consensus       104 ~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G  168 (322)
T KOG1610|consen  104 EDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG  168 (322)
T ss_pred             cccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence                 166666532 22221    2344468899999988887776655    345555555443

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.79  E-value=2.3e-07  Score=79.87  Aligned_cols=170  Identities=16%  Similarity=0.071  Sum_probs=104.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhcc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTLL---   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~~---   93 (303)
                      ..+++++|||||..||.++++.|. ..|.+|+..+|+.....         .....+.++++|+.+..++++..+..   
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La-~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~  111 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELA-LRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK  111 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence            346899999999999999999999 68899999999974431         12346778999999999887766543   


Q ss_pred             ----CceeEEeecccccC--ChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 ----EDVTHIFWVTWASQ--FASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 ----~~V~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                          |+.|+-|+......  ..+.-+..+.+|..|...+.+.+...  .....+++..|+..+ +.... +    .....
T Consensus       112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~-~----~~l~~  185 (314)
T KOG1208|consen  112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKID-L----KDLSG  185 (314)
T ss_pred             CCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccc-h----hhccc
Confidence                22333233322222  22223447899999988887777665  111145555555333 11000 0    00011


Q ss_pred             cCCCCCCCCccc-hHHHHHHHHH-----H----hcCCcceEEecCCceeec
Q 042242          166 EECPRVSKSNNF-YYVLEDLLKE-----K----LAGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       166 e~~~~~p~~~~~-~y~~~k~~~e-----~----~~~~~~~~ilRp~~v~G~  206 (303)
                      +....   +... -|+.+|+...     .    ..+ +.+..+.||.+...
T Consensus       186 ~~~~~---~~~~~~Y~~SKla~~l~~~eL~k~l~~~-V~~~~~hPG~v~t~  232 (314)
T KOG1208|consen  186 EKAKL---YSSDAAYALSKLANVLLANELAKRLKKG-VTTYSVHPGVVKTT  232 (314)
T ss_pred             hhccC---ccchhHHHHhHHHHHHHHHHHHHHhhcC-ceEEEECCCccccc
Confidence            11110   1111 2777776553     1    123 88999999999884

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=98.78  E-value=2.2e-07  Score=77.69  Aligned_cols=205  Identities=16%  Similarity=0.119  Sum_probs=113.7

Q ss_pred             HHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc----cCceeEEeecccccCChHHHHHHHHHH
Q 042242           44 LARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL----LEDVTHIFWVTWASQFASDMHKCCEQN  119 (303)
Q Consensus        44 l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~----~~~V~~~~~~~~~~~~~~~~~~~~~~n  119 (303)
                      +++.|+ +.|++|++++|++.+..    ..+++++|+.|.++++++++.    +|.++|.++...  ...  ....+++|
T Consensus         1 ~a~~l~-~~G~~Vv~~~r~~~~~~----~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~--~~~--~~~~~~vN   71 (241)
T PRK12428          1 TARLLR-FLGARVIGVDRREPGMT----LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG--TAP--VELVARVN   71 (241)
T ss_pred             ChHHHH-hCCCEEEEEeCCcchhh----hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC--CCC--HHHhhhhc
Confidence            467788 68999999999876531    235678999999999888875    566888876532  122  23479999


Q ss_pred             HHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccc----ccCCcCc------CCCCCCCCccchHHHHHHHHH--
Q 042242          120 KAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEK----QVRFYDE------ECPRVSKSNNFYYVLEDLLKE--  187 (303)
Q Consensus       120 ~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~----~~~~~~e------~~~~~p~~~~~~y~~~k~~~e--  187 (303)
                      +.++..+++.+.....+-.+++.+++...|+.+.. ++..    ......+      ..+..+..+   |+.+|...+  
T Consensus        72 ~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Y~~sK~a~~~~  147 (241)
T PRK12428         72 FLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQR-LELHKALAATASFDEGAAWLAAHPVALATG---YQLSKEALILW  147 (241)
T ss_pred             hHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccc-hHHHHhhhccchHHHHHHhhhccCCCcccH---HHHHHHHHHHH
Confidence            99999999998765222245555555444432110 0000    0000000      011111233   777775443  


Q ss_pred             ---Hh----cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHH
Q 042242          188 ---KL----AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHI  259 (303)
Q Consensus       188 ---~~----~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~  259 (303)
                         .+    ... +++.+++||.+.++-.....   ..... ....+    . .         ..+..+...+++|.+++
T Consensus       148 ~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~---~~~~~-~~~~~----~-~---------~~~~~~~~pe~va~~~~  209 (241)
T PRK12428        148 TMRQAQPWFGARGIRVNCVAPGPVFTPILGDFR---SMLGQ-ERVDS----D-A---------KRMGRPATADEQAAVLV  209 (241)
T ss_pred             HHHHHHHhhhccCeEEEEeecCCccCcccccch---hhhhh-Hhhhh----c-c---------cccCCCCCHHHHHHHHH
Confidence               12    222 99999999999874221110   00000 00000    0 0         11112457889999999


Q ss_pred             HHhcCcCCcCCCCceEEeecC
Q 042242          260 WVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       260 ~~~~~~~~~~~~g~~yni~~~  280 (303)
                      +++..+.. ...|+...+.++
T Consensus       210 ~l~s~~~~-~~~G~~i~vdgg  229 (241)
T PRK12428        210 FLCSDAAR-WINGVNLPVDGG  229 (241)
T ss_pred             HHcChhhc-CccCcEEEecCc
Confidence            98754322 133466655554

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=98.77  E-value=2.2e-07  Score=74.09  Aligned_cols=114  Identities=20%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc-ccc-------c--cCCCeEEEEecCCCHHHHHHHHhccC-----
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-ITA-------I--QSSSYCFISCDLLNPLDIKRKLTLLE-----   94 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~-~~~-------~--~~~~~~~~~~D~~~~~~l~~~~~~~~-----   94 (303)
                      +++|||++|.||..++++|......+|+++.|++. ...       .  ....+.++++|++|++++.+++..+.     
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            68999999999999999999544556999999832 211       1  12467888999999999999987652     


Q ss_pred             --ceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeec
Q 042242           95 --DVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTG  145 (303)
Q Consensus        95 --~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~  145 (303)
                        .|||+++...    ...+..+....+..-+.++.++.+++...  .+.+++..|+
T Consensus        82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~--~l~~~i~~SS  136 (181)
T PF08659_consen   82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR--PLDFFILFSS  136 (181)
T ss_dssp             EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT--TTSEEEEEEE
T ss_pred             cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC--CCCeEEEECC
Confidence              3999976532    23334444457788889999999988764  4455555554

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.75  E-value=3.2e-07  Score=77.03  Aligned_cols=118  Identities=16%  Similarity=0.154  Sum_probs=80.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-----c-ccC----CCeEEEEecCCC-HHHHHHHHhc--
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-----A-IQS----SSYCFISCDLLN-PLDIKRKLTL--   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-----~-~~~----~~~~~~~~D~~~-~~~l~~~~~~--   92 (303)
                      +++++|+||||++.||..+++.|. ..|+.|+++.|+....     . ...    ..+.+..+|+++ .++++.+++.  
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~   81 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALA-REGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE   81 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999 7999988888876531     1 112    256677899998 7776655543  


Q ss_pred             -----cCceeEEeecc-----cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeec
Q 042242           93 -----LEDVTHIFWVT-----WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTG  145 (303)
Q Consensus        93 -----~~~V~~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~  145 (303)
                           +|.+++.++..     ..........+.+++|+.+...+.+.+......- +++.+++
T Consensus        82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~Iv~isS  143 (251)
T COG1028          82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ-RIVNISS  143 (251)
T ss_pred             HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC-eEEEECC
Confidence                 44455555542     2233345556789999999888888655542211 5555544

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.74  E-value=8.5e-07  Score=76.32  Aligned_cols=108  Identities=14%  Similarity=0.083  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCC---------ccccc-----cCC-------CeEEEEecCC
Q 042242           25 VDAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKP---------EITAI-----QSS-------SYCFISCDLL   81 (303)
Q Consensus        25 ~~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~---------~~~~~-----~~~-------~~~~~~~D~~   81 (303)
                      ..++|+++||||+  ..||+++++.|. ..|++|++.+|.+         .....     ...       ++..+..|+.
T Consensus         5 ~~~gk~alITGa~~~~GIG~a~A~~la-~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~   83 (299)
T PRK06300          5 DLTGKIAFIAGIGDDQGYGWGIAKALA-EAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD   83 (299)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHH-HCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence            3467899999995  899999999999 7899998876532         00000     000       0111223333


Q ss_pred             CHH------------------HHHHHHh-------ccCceeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHH
Q 042242           82 NPL------------------DIKRKLT-------LLEDVTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAI  130 (303)
Q Consensus        82 ~~~------------------~l~~~~~-------~~~~V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~  130 (303)
                      +.+                  +++++++       ..|.++|.++..      ....+..+..+.+++|+.+..++++++
T Consensus        84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~  163 (299)
T PRK06300         84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF  163 (299)
T ss_pred             CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            332                  2333332       345567765421      122334455568899999999999988


Q ss_pred             hhc
Q 042242          131 LPR  133 (303)
Q Consensus       131 ~~~  133 (303)
                      ...
T Consensus       164 ~p~  166 (299)
T PRK06300        164 GPI  166 (299)
T ss_pred             HHH
Confidence            765

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.68  E-value=2.2e-07  Score=80.77  Aligned_cols=109  Identities=10%  Similarity=0.041  Sum_probs=74.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc------CCCeEEEEecCCccccccCCCeE------EEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLIST------ANWKVYGIARKPEITAIQSSSYC------FISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~------~g~~V~~~~r~~~~~~~~~~~~~------~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      .+|+||||+|+||++++..|+..      .+++|+++++++...........      ....|+....++.+.++++|.|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            57999999999999999999831      23589999996642111110011      1122433345677889999999


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccE
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKH  139 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~  139 (303)
                      +|+|+.....  ..+..+.++.|+.-...+...+.+.+ +..+.
T Consensus        83 I~tAG~~~~~--~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~ii  124 (325)
T cd01336          83 ILVGAMPRKE--GMERKDLLKANVKIFKEQGEALDKYAKKNVKV  124 (325)
T ss_pred             EEeCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            9998764332  23334589999999999999998874 34433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=98.65  E-value=5.6e-07  Score=95.74  Aligned_cols=107  Identities=14%  Similarity=0.070  Sum_probs=80.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc----c-----------------------------------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT----A-----------------------------------   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~----~-----------------------------------   67 (303)
                      +++++|||||++.||..++++|.+..|++|++++|++...    +                                   
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            4689999999999999999999954578999999982100    0                                   


Q ss_pred             -------------c--cCCCeEEEEecCCCHHHHHHHHhc------cCceeEEeeccc----ccCChHHHHHHHHHHHHH
Q 042242           68 -------------I--QSSSYCFISCDLLNPLDIKRKLTL------LEDVTHIFWVTW----ASQFASDMHKCCEQNKAM  122 (303)
Q Consensus        68 -------------~--~~~~~~~~~~D~~~~~~l~~~~~~------~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~  122 (303)
                                   .  ....+.++.+|++|.++++++++.      +|.|+|.++...    ......+....+++|+.|
T Consensus      2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred             cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence                         0  012467889999999988877764      456888876532    233455555689999999


Q ss_pred             HHHHHHHHhhc
Q 042242          123 MCNALNAILPR  133 (303)
Q Consensus       123 ~~~ll~~~~~~  133 (303)
                      +.++++++...
T Consensus      2156 ~~~Ll~al~~~ 2166 (2582)
T TIGR02813      2156 LLSLLAALNAE 2166 (2582)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=98.62  E-value=3.5e-07  Score=72.95  Aligned_cols=202  Identities=14%  Similarity=0.091  Sum_probs=119.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~  106 (303)
                      -..++.|+.||.|+++++... +.+++|-.+.|+..+..+  ....+....+|......+...+.+...++-++..    
T Consensus        53 e~tlvlggnpfsgs~vlk~A~-~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~gg----  127 (283)
T KOG4288|consen   53 EWTLVLGGNPFSGSEVLKNAT-NVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGG----  127 (283)
T ss_pred             HHHhhhcCCCcchHHHHHHHH-hhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcC----
Confidence            468999999999999999998 789999999998654321  1235666778877666666666665544444322    


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                        ..+...+.+.|-....+-++++.+.  .+.+++++|.. .|+.+                +..|. .   |-..|...
T Consensus       128 --fgn~~~m~~ing~ani~a~kaa~~~--gv~~fvyISa~-d~~~~----------------~~i~r-G---Y~~gKR~A  182 (283)
T KOG4288|consen  128 --FGNIILMDRINGTANINAVKAAAKA--GVPRFVYISAH-DFGLP----------------PLIPR-G---YIEGKREA  182 (283)
T ss_pred             --ccchHHHHHhccHhhHHHHHHHHHc--CCceEEEEEhh-hcCCC----------------Cccch-h---hhccchHH
Confidence              1112225677777777777777766  34556665532 11111                11111 1   44444444


Q ss_pred             H--HhcCC-cceEEecCCceeecCCCCccchhhHHHHH----HHHhhhCCCc---eeeCCchhhhhhhcccCccHHHHHH
Q 042242          187 E--KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVY----GAVCKHLNLP---FVFGGTREIWEEYCLDGSDSRLVAE  256 (303)
Q Consensus       187 e--~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~a~  256 (303)
                      |  ..... ++-+++|||.+||...-..+.  ..+...    ....+...+|   +.+-|      ..+...+.++++|.
T Consensus       183 E~Ell~~~~~rgiilRPGFiyg~R~v~g~~--~pL~~vg~pl~~~~~~a~k~~~kLp~lg------~l~~ppvnve~VA~  254 (283)
T KOG4288|consen  183 EAELLKKFRFRGIILRPGFIYGTRNVGGIK--SPLHTVGEPLEMVLKFALKPLNKLPLLG------PLLAPPVNVESVAL  254 (283)
T ss_pred             HHHHHHhcCCCceeeccceeecccccCccc--ccHHhhhhhHHHHHHhhhchhhcCcccc------cccCCCcCHHHHHH
Confidence            4  23222 788999999999963322211  111111    1112211111   22233      45566889999999


Q ss_pred             HHHHHhcCcCCc
Q 042242          257 QHIWVATNDDIS  268 (303)
Q Consensus       257 a~~~~~~~~~~~  268 (303)
                      +.+.++.+|+-.
T Consensus       255 aal~ai~dp~f~  266 (283)
T KOG4288|consen  255 AALKAIEDPDFK  266 (283)
T ss_pred             HHHHhccCCCcC
Confidence            999999988653

>PRK08309 short chain dehydrogenase; Provisional

Probab=98.62  E-value=9.1e-08  Score=75.66  Aligned_cols=63  Identities=19%  Similarity=0.185  Sum_probs=50.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      ++++|||||||+|. +++.|. ..||+|++++|++.....      ....+.++.+|+.|.+++.++++.+
T Consensus         1 m~vlVtGGtG~gg~-la~~L~-~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~   69 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLC-EKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKST   69 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHH-HCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            47999999998876 999998 689999999998654321      1235778889999999988877654

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.59  E-value=7.2e-07  Score=77.05  Aligned_cols=110  Identities=10%  Similarity=-0.055  Sum_probs=76.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhh-cCCCeEEEEecCCcccc-cc--CCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLIS-TANWKVYGIARKPEITA-IQ--SSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~-~~g~~V~~~~r~~~~~~-~~--~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ..+++||.|+|++|.||+.++..|.. ...+++.++++...... .+  +-...+...+.+|+.++.+.++++|.|++++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            33457999999999999999999872 23357999998432221 11  1111233456666555678999999888887


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKA  136 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~  136 (303)
                      +......  .+..+.+..|+..+.++++++++++++
T Consensus        85 G~~~~~~--~tR~dll~~N~~i~~~i~~~i~~~~~~  118 (321)
T PTZ00325         85 GVPRKPG--MTRDDLFNTNAPIVRDLVAAVASSAPK  118 (321)
T ss_pred             CCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            7643322  223348999999999999999998543

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=98.53  E-value=1.3e-06  Score=69.75  Aligned_cols=102  Identities=20%  Similarity=0.160  Sum_probs=71.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhcc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTLL-----   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~~-----   93 (303)
                      .+|++++||+.|.||+.++++|+ .+|..+.++.-+.+...        .+...+.++++|+++..++++.++.+     
T Consensus         4 tGKna~vtggagGIGl~~sk~Ll-~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg   82 (261)
T KOG4169|consen    4 TGKNALVTGGAGGIGLATSKALL-EKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG   82 (261)
T ss_pred             cCceEEEecCCchhhHHHHHHHH-HcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999 68888777665544421        23457889999999998888877654     


Q ss_pred             --CceeEEeecccccCChHHHHHHHHHHHHH----HHHHHHHHhhc
Q 042242           94 --EDVTHIFWVTWASQFASDMHKCCEQNKAM----MCNALNAILPR  133 (303)
Q Consensus        94 --~~V~~~~~~~~~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~  133 (303)
                        |++++-|+.  .....++.  .+.+|+-|    +...+.++.+.
T Consensus        83 ~iDIlINgAGi--~~dkd~e~--Ti~vNLtgvin~T~~alpyMdk~  124 (261)
T KOG4169|consen   83 TIDILINGAGI--LDDKDWER--TINVNLTGVINGTQLALPYMDKK  124 (261)
T ss_pred             ceEEEEccccc--ccchhHHH--hhccchhhhhhhhhhhhhhhhhh
Confidence              334444443  22233333  78888754    55566666554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.53  E-value=4.9e-07  Score=79.24  Aligned_cols=73  Identities=16%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      ++|+|+|+ |+||+.++..|+++..++|++.+|+..+..    ...++++.+++|+.|.+.+.+++++.|.|++++..
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~   78 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP   78 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence            68999997 999999999998444489999999977654    12347999999999999999999999888888543

>PLN00106 malate dehydrogenase

Probab=98.52  E-value=1.2e-06  Score=75.84  Aligned_cols=111  Identities=9%  Similarity=-0.064  Sum_probs=76.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc-cc--CCCeEEEEecCCCHHHHHHHHhccCceeEEeecc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA-IQ--SSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~-~~--~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~  103 (303)
                      ++||.|+|++|.||+.++..|.... ..++.++++.+.... .+  +-.......++.+.+++.+.++++|.|+|+++..
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~   97 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP   97 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence            4699999999999999999997222 236999998773221 11  1111223335444455778999999999997765


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      ..+.  ....+.+..|...+.++.+.++++++.-+.+
T Consensus        98 ~~~g--~~R~dll~~N~~i~~~i~~~i~~~~p~aivi  132 (323)
T PLN00106         98 RKPG--MTRDDLFNINAGIVKTLCEAVAKHCPNALVN  132 (323)
T ss_pred             CCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            4322  2234489999999999999999986544333

>PRK06720 hypothetical protein; Provisional

Probab=98.50  E-value=6.8e-07  Score=70.26  Aligned_cols=77  Identities=21%  Similarity=0.122  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      ++++++||||+|.||+.++..|. ..|++|++++|+.....     .  ......++.+|+++.+++.+.++       .
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~-~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLA-KQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999 68999999998765321     1  12346678999999988776543       3


Q ss_pred             cCceeEEeeccc
Q 042242           93 LEDVTHIFWVTW  104 (303)
Q Consensus        93 ~~~V~~~~~~~~  104 (303)
                      +|.++|.++...
T Consensus        94 iDilVnnAG~~~  105 (169)
T PRK06720         94 IDMLFQNAGLYK  105 (169)
T ss_pred             CCEEEECCCcCC
Confidence            555777766543

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.46  E-value=8.6e-07  Score=67.74  Aligned_cols=104  Identities=15%  Similarity=0.049  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCC-CeEEEEecCCCHHHHHHHHhccC---cee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSS-SYCFISCDLLNPLDIKRKLTLLE---DVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~-~~~~~~~D~~~~~~l~~~~~~~~---~V~   97 (303)
                      ...++.|++||+.-.||+.++++|. +.|.+|+++.|++....   .+.+ -++.+.+|+.+.+.+.+.+-..-   -.+
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La-~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLV   82 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLA-KAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLV   82 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHH-hcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhh
Confidence            3457899999999999999999998 78999999999987643   1233 38889999999998888876543   233


Q ss_pred             EEeecccccC----ChHHHHHHHHHHHHHHHHHHHH
Q 042242           98 HIFWVTWASQ----FASDMHKCCEQNKAMMCNALNA  129 (303)
Q Consensus        98 ~~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~  129 (303)
                      +-|+.+....    ..++-...+++|+.+..++...
T Consensus        83 NNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~  118 (245)
T KOG1207|consen   83 NNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQL  118 (245)
T ss_pred             ccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHH
Confidence            3333322221    1222223577888776655554

>PRK09620 hypothetical protein; Provisional

Probab=98.46  E-value=4.7e-07  Score=74.51  Aligned_cols=77  Identities=13%  Similarity=-0.021  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCC----------------ChhHHHHHHHHhhcCCCeEEEEecCCccccc-cCCC--eEEEEecCCCHHHHH
Q 042242           27 AKNVAVIFGVT----------------GLVGKELARRLISTANWKVYGIARKPEITAI-QSSS--YCFISCDLLNPLDIK   87 (303)
Q Consensus        27 ~~~~vlVtGat----------------G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~~~~--~~~~~~D~~~~~~l~   87 (303)
                      .+|+||||+|.                ||+|++|+++|+ ..|++|+++++.....+. ...+  +..+.+|....+.+.
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~-~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~   80 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELI-SKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMK   80 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHH-HCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHH
Confidence            46899999886                999999999999 699999999874331111 1112  334455334446777


Q ss_pred             HHHh--ccCceeEEeeccc
Q 042242           88 RKLT--LLEDVTHIFWVTW  104 (303)
Q Consensus        88 ~~~~--~~~~V~~~~~~~~  104 (303)
                      ++++  .+|.|+|+|+.+.
T Consensus        81 ~~~~~~~~D~VIH~AAvsD   99 (229)
T PRK09620         81 SIITHEKVDAVIMAAAGSD   99 (229)
T ss_pred             HHhcccCCCEEEECccccc
Confidence            8885  4677999977643

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.38  E-value=2e-06  Score=71.06  Aligned_cols=68  Identities=16%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             cCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCC--HHHHHHHHhccCceeEEeecc
Q 042242           35 GVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLN--PLDIKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        35 GatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~--~~~l~~~~~~~~~V~~~~~~~  103 (303)
                      .+||++|++|+++|+ ..|++|++++|+.........+++++.++..+  .+.+.+.++.+|.|+|+|+.+
T Consensus        23 ~SSG~iG~aLA~~L~-~~G~~V~li~r~~~~~~~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvs   92 (229)
T PRK06732         23 HSTGQLGKIIAETFL-AAGHEVTLVTTKTAVKPEPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVS   92 (229)
T ss_pred             ccchHHHHHHHHHHH-hCCCEEEEEECcccccCCCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccC
Confidence            568999999999999 68999999998643222123467776654433  245666677788899998764

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.35  E-value=1.6e-05  Score=66.72  Aligned_cols=116  Identities=16%  Similarity=0.084  Sum_probs=85.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhcc------
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTLL------   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~~------   93 (303)
                      ++|+|||++-.||..++..+. ..|.+|+++.|+..+..     +    ...++.+..+|+.|-++...++++.      
T Consensus        34 ~hi~itggS~glgl~la~e~~-~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~  112 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECK-REGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP  112 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHH-HccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence            699999999999999999998 68999999999877642     1    1123668899999999888888776      


Q ss_pred             -CceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhccCCcc---EEEEeec
Q 042242           94 -EDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRAKALK---HVSLQTG  145 (303)
Q Consensus        94 -~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~---~~~~~s~  145 (303)
                       |.++++|+.+...    .+...-....++|..++.+++.++....+...   +++++++
T Consensus       113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS  172 (331)
T KOG1210|consen  113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSS  172 (331)
T ss_pred             cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehh
Confidence             2377776655433    33444456789999999999988776522222   5555543

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=98.34  E-value=6e-06  Score=67.03  Aligned_cols=124  Identities=15%  Similarity=0.131  Sum_probs=78.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCC----CeEEEEecCCcccc---------cc--CCCeEEEEecCCCHHHHHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTAN----WKVYGIARKPEITA---------IQ--SSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g----~~V~~~~r~~~~~~---------~~--~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      +|.|.++|||++..||..|+.+|+...+    ..+.+.+|+.++..         ..  .-+++++++|+++.+++.++.
T Consensus         1 ~~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~   80 (341)
T KOG1478|consen    1 MMRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRAS   80 (341)
T ss_pred             CCceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHH
Confidence            4678899999999999999999993322    23666778776642         11  226788999999998877666


Q ss_pred             hccC------ceeEE-eecc-ccc------------------------------CChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242           91 TLLE------DVTHI-FWVT-WAS------------------------------QFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus        91 ~~~~------~V~~~-~~~~-~~~------------------------------~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                      +++.      +-+.+ |+.- ...                              .+..+..+.+++|+.|...+++.+..
T Consensus        81 ~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~p  160 (341)
T KOG1478|consen   81 KDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEP  160 (341)
T ss_pred             HHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhh
Confidence            5432      12222 1110 000                              01223336899999999988888776


Q ss_pred             c-----cCCccEEEEeeccccc
Q 042242          133 R-----AKALKHVSLQTGMKHY  149 (303)
Q Consensus       133 ~-----~~~~~~~~~~s~~~~y  149 (303)
                      .     .+.++.+|+..+.+-|
T Consensus       161 ll~~~~~~~lvwtSS~~a~kk~  182 (341)
T KOG1478|consen  161 LLCHSDNPQLVWTSSRMARKKN  182 (341)
T ss_pred             HhhcCCCCeEEEEeeccccccc
Confidence            5     2344455544444443

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.25  E-value=3.7e-06  Score=75.34  Aligned_cols=71  Identities=21%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc--c---cCCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           31 AVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA--I---QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~--~---~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      |+|+|+ |++|+.+++.|++...+ +|++.+|+..+..  .   ...++..+++|+.|.+++.+.++++|.|++++..
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            799999 99999999999955556 7999999987643  1   3568999999999999999999999989998654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=98.25  E-value=5.1e-06  Score=69.72  Aligned_cols=106  Identities=21%  Similarity=0.216  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCC--CeEEEEecCCCHHH----HHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSS--SYCFISCDLLNPLD----IKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~--~~~~~~~D~~~~~~----l~~~~~~~~   94 (303)
                      +++=++|||||..||+..+++|. ++|++|.+++|+.++..      .+..  .+.++.+|.++.+.    +++.+.+.|
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLA-krG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~  126 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELA-KRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLD  126 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence            34679999999999999999999 69999999999988753      1122  46678899988664    677777777


Q ss_pred             c--eeEEeeccccc-CC-----hHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           95 D--VTHIFWVTWAS-QF-----ASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        95 ~--V~~~~~~~~~~-~~-----~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +  +++.++..+.. .+     .....+.+.+|..++..+.+.....
T Consensus       127 VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~  173 (312)
T KOG1014|consen  127 VGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPG  173 (312)
T ss_pred             eEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhh
Confidence            4  66665554421 11     1122346678888877666665543

>PRK05086 malate dehydrogenase; Provisional

Probab=98.23  E-value=1.4e-05  Score=69.22  Aligned_cols=105  Identities=15%  Similarity=0.088  Sum_probs=69.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhh--cCCCeEEEEecCCccc----cccC-CCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           29 NVAVIFGVTGLVGKELARRLIS--TANWKVYGIARKPEIT----AIQS-SSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~--~~g~~V~~~~r~~~~~----~~~~-~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      +||+|+||||.||++++..|..  ..++++++++|++...    ...+ +....+.+  .+.+++.+.++++|.|+.+++
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~--~~~~d~~~~l~~~DiVIitaG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG--FSGEDPTPALEGADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE--eCCCCHHHHcCCCCEEEEcCC
Confidence            5899999999999999988852  2356788888875421    1111 11122333  222345567788887777766


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      .....  .....+.+..|...+.++++.+.+++++-
T Consensus        79 ~~~~~--~~~R~dll~~N~~i~~~ii~~i~~~~~~~  112 (312)
T PRK05086         79 VARKP--GMDRSDLFNVNAGIVKNLVEKVAKTCPKA  112 (312)
T ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            54332  22334489999999999999999885443

>cd00704 MDH Malate dehydrogenase

Probab=98.21  E-value=1.7e-05  Score=68.89  Aligned_cols=104  Identities=12%  Similarity=0.058  Sum_probs=73.3

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCC-------CeEEEEecCCccccccCCCeEEEEecCCCH-----------HHHHHHHh
Q 042242           30 VAVIFGVTGLVGKELARRLISTAN-------WKVYGIARKPEITAIQSSSYCFISCDLLNP-----------LDIKRKLT   91 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~-----------~~l~~~~~   91 (303)
                      ||.|+||+|.||+.++..|. ..+       +++.++++++..     +..+-...|+.|.           ....+.++
T Consensus         2 KV~IiGAaG~VG~~~a~~L~-~~~~~~~~~~~~l~L~Di~~~~-----~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~   75 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIA-SGELFGDDQPVILHLLDIPPAM-----KALEGVVMELQDCAFPLLKGVVITTDPEEAFK   75 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHH-hCCccCCCCceEEEEEecCCcc-----CccceeeeehhhhcccccCCcEEecChHHHhC
Confidence            79999999999999999988 333       369999987621     1122223344443           24567899


Q ss_pred             ccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEE
Q 042242           92 LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVS  141 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~  141 (303)
                      ++|.|+|+|+.+..  ...+..+.+..|..-...+...+.+.+ +..+.++
T Consensus        76 ~aDiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv  124 (323)
T cd00704          76 DVDVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV  124 (323)
T ss_pred             CCCEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE
Confidence            99989999876433  233444589999999999999999884 6554443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.19  E-value=1.5e-05  Score=66.68  Aligned_cols=95  Identities=12%  Similarity=0.068  Sum_probs=66.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccC--ceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLE--DVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~--~V~~~~~~~~~  105 (303)
                      ++|||+||||. |+.|++.|. ..||+|++..+++.... ....+...+..+..|.+++.+.++..+  .|++..+.   
T Consensus         1 m~ILvlGGT~e-gr~la~~L~-~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP---   75 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLI-AQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHP---   75 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHH-hCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH---
Confidence            47999999999 999999998 68999999999886543 222334455567778888989998754  46666432   


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                                +..  ..+.++.++|++.+....++
T Consensus        76 ----------fA~--~is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        76 ----------FAA--QITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             ----------HHH--HHHHHHHHHHHHhCCcEEEE
Confidence                      111  34556788888875444443

This enzyme was found to be a monomer by gel filtration.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.16  E-value=6.7e-06  Score=66.32  Aligned_cols=73  Identities=18%  Similarity=0.084  Sum_probs=57.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++++|+||+|.+|+.+++.|. ..|++|+++.|+..+..     . ...+..+..+|..+.+.+.+.++++|.|++.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            356899999999999999999998 57889999999865432     1 0124556678899999999999998866655

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.10  E-value=3.3e-05  Score=67.15  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=71.6

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCC-------CeEEEEecCCccccccCCCeEEEEecCCCHH-----------HHHHHHh
Q 042242           30 VAVIFGVTGLVGKELARRLISTAN-------WKVYGIARKPEITAIQSSSYCFISCDLLNPL-----------DIKRKLT   91 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~-----------~l~~~~~   91 (303)
                      +|.|+||+|.||+.++..|. ..+       ++++++++.+...     ..+-...|+.|..           ...+.++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~-~~~~~~~~~e~el~LiD~~~~~~-----~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~   74 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIA-RGRMLGKDQPIILHLLDIPPAMK-----VLEGVVMELMDCAFPLLDGVVPTHDPAVAFT   74 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHH-hccccCCCCccEEEEEecCCccc-----ccceeEeehhcccchhcCceeccCChHHHhC
Confidence            58999999999999999998 322       3699999865431     1222334444433           3457888


Q ss_pred             ccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEE
Q 042242           92 LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHV  140 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~  140 (303)
                      ++|.|+++++.....  ..+..+.+..|+.-...+...+.+++ +..+.+
T Consensus        75 ~aDiVVitAG~~~~~--~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iii  122 (324)
T TIGR01758        75 DVDVAILVGAFPRKE--GMERRDLLSKNVKIFKEQGRALDKLAKKDCKVL  122 (324)
T ss_pred             CCCEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence            899888887764332  22234589999999999999999884 544433

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.96  E-value=1.2e-05  Score=69.70  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      ..+++|+||||+|+||+.++++|+...+ .+++++.|+..+......  ++..+++.   .+.+.+.++|.|+|+++.
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~--el~~~~i~---~l~~~l~~aDiVv~~ts~  225 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA--ELGGGKIL---SLEEALPEADIVVWVASM  225 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH--HhccccHH---hHHHHHccCCEEEECCcC
Confidence            4568999999999999999999973334 579999987654331111  11123433   466888899988888665

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=97.82  E-value=7.6e-05  Score=66.61  Aligned_cols=74  Identities=14%  Similarity=0.043  Sum_probs=55.6

Q ss_pred             CCCCCEEEEEcC----------------CChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHH
Q 042242           25 VDAKNVAVIFGV----------------TGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKR   88 (303)
Q Consensus        25 ~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~   88 (303)
                      .+.+++|+||||                +|.+|.+++++|. ..|++|++++++... .. ..+  +..+|+.+.+++.+
T Consensus       185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~-~~Ga~V~~v~~~~~~-~~-~~~--~~~~dv~~~~~~~~  259 (399)
T PRK05579        185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAA-RRGADVTLVSGPVNL-PT-PAG--VKRIDVESAQEMLD  259 (399)
T ss_pred             ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHH-HCCCEEEEeCCCccc-cC-CCC--cEEEccCCHHHHHH
Confidence            356799999999                9999999999999 789999999987532 11 122  34579999888776


Q ss_pred             HHh----ccCceeEEeecc
Q 042242           89 KLT----LLEDVTHIFWVT  103 (303)
Q Consensus        89 ~~~----~~~~V~~~~~~~  103 (303)
                      .+.    .+|.++|.|+.+
T Consensus       260 ~v~~~~~~~DilI~~Aav~  278 (399)
T PRK05579        260 AVLAALPQADIFIMAAAVA  278 (399)
T ss_pred             HHHHhcCCCCEEEEccccc
Confidence            664    356677776653

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.78  E-value=0.0002  Score=54.47  Aligned_cols=104  Identities=15%  Similarity=-0.000  Sum_probs=68.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +||.|+|++|.+|++++..|... -..++.++++++....     +    ........... .+    .+.++++|.|+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~----~~~~~~aDivvi   75 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GD----YEALKDADIVVI   75 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SS----GGGGTTESEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-cc----ccccccccEEEE
Confidence            48999999999999999999832 2346999999865432     0    01112211111 22    246778886666


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      +++...  ....+..+.++.|..-...+.+.+.+.++.-+.
T Consensus        76 tag~~~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~v  114 (141)
T PF00056_consen   76 TAGVPR--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIV  114 (141)
T ss_dssp             TTSTSS--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEE
T ss_pred             eccccc--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEE
Confidence            655432  222334458999999999999999988755443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.67  E-value=0.00027  Score=61.22  Aligned_cols=103  Identities=17%  Similarity=0.046  Sum_probs=65.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCC--ccccccC---------CCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKP--EITAIQS---------SSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~--~~~~~~~---------~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ++|.|+|+||++|..++..|+ ..|+  +|++++|.+  .......         .+... .....  .+. +.++++|.
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i~~~--~d~-~~l~~aDi   75 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EIKIS--SDL-SDVAGSDI   75 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhchhccCCCc-EEEEC--CCH-HHhCCCCE
Confidence            489999999999999999998 5565  499999954  2221000         01110 11111  112 35888887


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      |+.+++.+..  ...+..+.+..|..-...+.+.+.+.++..+
T Consensus        76 Viitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~  116 (309)
T cd05294          76 VIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTK  116 (309)
T ss_pred             EEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            6666554322  2222334789999999999999888765443

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.67  E-value=0.00067  Score=59.00  Aligned_cols=106  Identities=9%  Similarity=-0.002  Sum_probs=68.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-------eEEEEecCCcc--cc---ccCCCeE-EEE--ecCCCHHHHHHHHhc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-------KVYGIARKPEI--TA---IQSSSYC-FIS--CDLLNPLDIKRKLTL   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~--~~---~~~~~~~-~~~--~D~~~~~~l~~~~~~   92 (303)
                      .+||.|+|++|.||..++..|. ..+.       ++.+++..+..  ..   ....+.. ...  ..+.  ....+.+++
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~~~~~~d   78 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDPNVAFKD   78 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCcHHHhCC
Confidence            4699999999999999999998 4554       79999985433  11   0000000 000  0011  112467888


Q ss_pred             cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC-Ccc
Q 042242           93 LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-ALK  138 (303)
Q Consensus        93 ~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~  138 (303)
                      +|.|+.+++.+..  ...+..+.+..|..-...+...+.++++ ..+
T Consensus        79 aDivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~i  123 (322)
T cd01338          79 ADWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVK  123 (322)
T ss_pred             CCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeE
Confidence            8877777665322  2334445899999999999999998873 444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.53  E-value=0.00029  Score=60.41  Aligned_cols=72  Identities=13%  Similarity=0.080  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCC---cccc-----c--cCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKP---EITA-----I--QSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~---~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      .++++++|+|| |.+|++++..|. ..|++ |+++.|+.   .+..     +  ...++.+..+|+.+.+++.+.++.+|
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La-~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCA-LDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            34689999997 899999999998 67886 99999986   2221     1  11234556789888888888888888


Q ss_pred             ceeEE
Q 042242           95 DVTHI   99 (303)
Q Consensus        95 ~V~~~   99 (303)
                      .|+++
T Consensus       202 ilINa  206 (289)
T PRK12548        202 ILVNA  206 (289)
T ss_pred             EEEEe
Confidence            77776

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=97.50  E-value=0.00015  Score=61.90  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             EEEEEcCCChhHHHHHHHHhh---cCCCeEEEEecCCcccc------------ccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           30 VAVIFGVTGLVGKELARRLIS---TANWKVYGIARKPEITA------------IQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~---~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      -++|.|||||-|.++++.+.+   ..+.++-+-.|++.+..            .....+ ++.+|.+|++++.+..+.+.
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak~~~   85 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAKQAR   85 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHhhhE
Confidence            589999999999999999983   16777777788876542            112234 88899999999999999999


Q ss_pred             ceeEEeec
Q 042242           95 DVTHIFWV  102 (303)
Q Consensus        95 ~V~~~~~~  102 (303)
                      +|+|++++
T Consensus        86 vivN~vGP   93 (423)
T KOG2733|consen   86 VIVNCVGP   93 (423)
T ss_pred             EEEecccc
Confidence            88888553

>PRK05442 malate dehydrogenase; Provisional

Probab=97.48  E-value=0.0018  Score=56.30  Aligned_cols=99  Identities=14%  Similarity=0.055  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-------eEEEEecCCccccccCCCeEEEEecCCCH-----------HHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-------KVYGIARKPEITAIQSSSYCFISCDLLNP-----------LDIKRK   89 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~D~~~~-----------~~l~~~   89 (303)
                      ++||.|+|++|.+|+.++..|. ..+.       ++.++++.+.....     .-...|+.|.           ....+.
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~-~~~~~~~~~~~el~LiDi~~~~~~~-----~g~a~Dl~~~~~~~~~~~~i~~~~y~~   77 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIA-SGDMLGKDQPVILQLLEIPPALKAL-----EGVVMELDDCAFPLLAGVVITDDPNVA   77 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHH-hhhhcCCCCccEEEEEecCCccccc-----ceeehhhhhhhhhhcCCcEEecChHHH
Confidence            4699999999999999999887 3343       78999986532100     0000111111           122467


Q ss_pred             HhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042242           90 LTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA  134 (303)
Q Consensus        90 ~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~  134 (303)
                      ++++|.|+.+++.+  .....+..+.+..|..-...+...+.++.
T Consensus        78 ~~daDiVVitaG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~  120 (326)
T PRK05442         78 FKDADVALLVGARP--RGPGMERKDLLEANGAIFTAQGKALNEVA  120 (326)
T ss_pred             hCCCCEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888666666543  22334445589999999999999999864

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.48  E-value=0.00014  Score=64.62  Aligned_cols=39  Identities=18%  Similarity=0.396  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +.++|.|.||||++|..|++.|+....++|+.+.++...
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa   75 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA   75 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc
Confidence            557999999999999999999985568899999886443

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.44  E-value=0.0014  Score=57.07  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-------eEEEEecCCcc--cc---ccCCCeE-EEEecCCCHHHHHHHHhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-------KVYGIARKPEI--TA---IQSSSYC-FISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~--~~---~~~~~~~-~~~~D~~~~~~l~~~~~~~~   94 (303)
                      .-||.|+||+|.+|+.++..|+ ..+.       ++.+++..+..  ..   ....+.. ....+..-...-.+.++++|
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD   81 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD   81 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence            3589999999999999999998 4553       79999986522  21   0000000 00001000012346788888


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK  135 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~  135 (303)
                      .|+..|+.+  .+...+..+.+..|..-...+...+.+.++
T Consensus        82 vVVitAG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~  120 (323)
T TIGR01759        82 AALLVGAFP--RKPGMERADLLSKNGKIFKEQGKALNKVAK  120 (323)
T ss_pred             EEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            777776653  233344455899999999999999998865

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.0004  Score=57.26  Aligned_cols=67  Identities=21%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-c--CCCeEEEEecCCCHHHHHHH-HhccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-Q--SSSYCFISCDLLNPLDIKRK-LTLLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~--~~~~~~~~~D~~~~~~l~~~-~~~~~~V~   97 (303)
                      |+++|.| .|-+|+.+++.|. +.|++|+++++++..... .  ....+.+.+|-++++.|+++ +..+|.++
T Consensus         1 m~iiIiG-~G~vG~~va~~L~-~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vv   71 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELS-EEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVV   71 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHH-hCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence            5789999 6999999999998 789999999999877442 2  36788999999999988887 66666433

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.41  E-value=0.0011  Score=57.27  Aligned_cols=109  Identities=11%  Similarity=0.026  Sum_probs=70.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc---ccC--CCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA---IQS--SSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~---~~~--~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      +||.|+|++|.+|+.++..|. ..+  .++.+++.+.....   +.+  ....+....  ..+++.+.++++|.|+..++
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~--~~~~~y~~~~daDivvitaG   77 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYL--GPEELKKALKGADVVVIPAG   77 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecCccceeehHhHhCCCcceEEEec--CCCchHHhcCCCCEEEEeCC
Confidence            489999999999999999997 455  46999988721111   111  111111110  11234568888887666666


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      .+.  ....+..+.++.|..-...+.+.+.++++..+.+..
T Consensus        78 ~~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivv  116 (310)
T cd01337          78 VPR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILII  116 (310)
T ss_pred             CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence            532  223344458999999999999999988765544443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.41  E-value=0.00016  Score=55.39  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=76.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhcc-------Cc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTLL-------ED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~-------~~   95 (303)
                      ++-..+|||+...+|+..+++|. ..|.+|.+++-..++..    ....++.+...|+++..+++.+|..+       |.
T Consensus         8 kglvalvtggasglg~ataerla-kqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    8 KGLVALVTGGASGLGKATAERLA-KQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             cCeeEEeecCcccccHHHHHHHH-hcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            34578999999999999999999 78999999998766542    23456788899999999988887654       34


Q ss_pred             eeEEeecccccCC----------hHHHHHHHHHHHHHHHHHHHHHh
Q 042242           96 VTHIFWVTWASQF----------ASDMHKCCEQNKAMMCNALNAIL  131 (303)
Q Consensus        96 V~~~~~~~~~~~~----------~~~~~~~~~~n~~~~~~ll~~~~  131 (303)
                      .++|++.+...+.          -++-...+++|+.|+.|+++...
T Consensus        87 ~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~a  132 (260)
T KOG1199|consen   87 LVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGA  132 (260)
T ss_pred             eeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehh
Confidence            6777665543221          22223456789999988877543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.34  E-value=0.0042  Score=53.95  Aligned_cols=101  Identities=14%  Similarity=0.058  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----cc-----CCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----IQ-----SSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~~-----~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ++||.|+|+ |.+|+.++..|+ ..+.  ++.+++++.....     +.     ..++.+. .  .+    .+.++++|.
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~-~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~----~~~~~~adi   76 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALV-NQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GD----YSDCKDADL   76 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CC----HHHhCCCCE
Confidence            469999997 999999999998 4565  7999999776532     00     0122222 1  12    245788887


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      |+..++.+..  ...+..+.+..|..-...+++.+.+.++....
T Consensus        77 vIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~v  118 (315)
T PRK00066         77 VVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIF  118 (315)
T ss_pred             EEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            7777665332  22333458999999999999999987654433

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.34  E-value=0.0014  Score=56.68  Aligned_cols=108  Identities=9%  Similarity=0.039  Sum_probs=70.2

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-c--cC--CCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           30 VAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-I--QS--SSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-~--~~--~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      ||.|+|++|.||+.++..|. ..+.  ++.++++++.... .  .+  ....+....  +.+++.+.++++|.|+..++.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~-~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~--~~~~~~~~~~daDivvitaG~   77 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLK-LQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFS--GEEGLENALKGADVVVIPAGV   77 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHH-hCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEec--CCCchHHHcCCCCEEEEeCCC
Confidence            58999999999999999998 4454  6999998763221 1  11  011111101  112245688999977777665


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      ..  ....+..+.+..|..-...+.+.+.+.++.-+.++.
T Consensus        78 ~~--~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivv  115 (312)
T TIGR01772        78 PR--KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVI  115 (312)
T ss_pred             CC--CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEe
Confidence            32  223344458999999999999999988765554443

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.32  E-value=0.00094  Score=66.16  Aligned_cols=74  Identities=14%  Similarity=0.077  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-------------EEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-------------VYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-------------V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      .+++|+|+|| |+||+.+++.|.+..+++             |++.++......   ...++++.++.|+.|.+++.+.+
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            3579999995 999999999998555555             777777665433   12346788999999999999999


Q ss_pred             hccCceeEEee
Q 042242           91 TLLEDVTHIFW  101 (303)
Q Consensus        91 ~~~~~V~~~~~  101 (303)
                      +++|.|+.+..
T Consensus       647 ~~~DaVIsalP  657 (1042)
T PLN02819        647 SQVDVVISLLP  657 (1042)
T ss_pred             cCCCEEEECCC
Confidence            99887777643

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.27  E-value=0.0012  Score=52.48  Aligned_cols=75  Identities=15%  Similarity=0.054  Sum_probs=44.8

Q ss_pred             CCCEEEEEcC----------------CChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCC--HHHHHH
Q 042242           27 AKNVAVIFGV----------------TGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLN--PLDIKR   88 (303)
Q Consensus        27 ~~~~vlVtGa----------------tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~--~~~l~~   88 (303)
                      .+|+||||+|                ||-.|..|++.++ ..|++|+.+.....- . ..+++.++.+.-.+  .+.+.+
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~-~~Ga~V~li~g~~~~-~-~p~~~~~i~v~sa~em~~~~~~   78 (185)
T PF04127_consen    2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAA-RRGAEVTLIHGPSSL-P-PPPGVKVIRVESAEEMLEAVKE   78 (185)
T ss_dssp             TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHH-HTT-EEEEEE-TTS------TTEEEEE-SSHHHHHHHHHH
T ss_pred             CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHH-HCCCEEEEEecCccc-c-ccccceEEEecchhhhhhhhcc
Confidence            3567777765                7999999999999 799999999988421 1 13466666544322  134455


Q ss_pred             HHhccCceeEEeeccc
Q 042242           89 KLTLLEDVTHIFWVTW  104 (303)
Q Consensus        89 ~~~~~~~V~~~~~~~~  104 (303)
                      .++.+|.++++|+.+.
T Consensus        79 ~~~~~Di~I~aAAVsD   94 (185)
T PF04127_consen   79 LLPSADIIIMAAAVSD   94 (185)
T ss_dssp             HGGGGSEEEE-SB--S
T ss_pred             ccCcceeEEEecchhh
Confidence            5666777888866543

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=97.25  E-value=0.0019  Score=56.94  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCChhHHH--HHHHHhhcCCCeEEEEecCCc--cc-------------c--ccC--CCeEEEEecCCCHHH
Q 042242           27 AKNVAVIFGVTGLVGKE--LARRLISTANWKVYGIARKPE--IT-------------A--IQS--SSYCFISCDLLNPLD   85 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~--l~~~L~~~~g~~V~~~~r~~~--~~-------------~--~~~--~~~~~~~~D~~~~~~   85 (303)
                      .+|++||||+++.+|.+  +++.|  ..|.+|+++++...  ..             .  ...  ..+..+.+|+.+.++
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al--~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF--GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH--HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            46899999999999999  88888  37889888885321  10             0  111  235678999999988


Q ss_pred             HHHHHhc-------cCceeEEeecc
Q 042242           86 IKRKLTL-------LEDVTHIFWVT  103 (303)
Q Consensus        86 l~~~~~~-------~~~V~~~~~~~  103 (303)
                      +.++++.       +|.++|.++.+
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence            7766643       44467775443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.25  E-value=0.00062  Score=62.43  Aligned_cols=69  Identities=19%  Similarity=0.107  Sum_probs=54.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHH-HhccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRK-LTLLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~~   99 (303)
                      |+|+|+|+ |.+|+.+++.|. ..|++|+++++++.....  ...++.++.+|..+...+.++ +++++.|+.+
T Consensus         1 m~viIiG~-G~ig~~~a~~L~-~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLS-GENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            47999996 999999999998 689999999998765432  125688999999998888877 6777644443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.22  E-value=0.0036  Score=54.24  Aligned_cols=99  Identities=16%  Similarity=0.022  Sum_probs=67.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccccc-----------CCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITAIQ-----------SSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~~-----------~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ++|.|+| +|.+|+.++..|+ ..|  ++|.+++|++......           .....+. .  .+.    +.++++|.
T Consensus         1 ~kI~IIG-aG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~----~~l~~aDI   71 (306)
T cd05291           1 RKVVIIG-AGHVGSSFAYSLV-NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDY----SDCKDADI   71 (306)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCH----HHhCCCCE
Confidence            4799999 5999999999998 566  5899999987654211           1111221 1  222    34678887


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      |+.+++.+..  ...+..+.+..|..-...+.+.+++.++.-+
T Consensus        72 VIitag~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~  112 (306)
T cd05291          72 VVITAGAPQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGI  112 (306)
T ss_pred             EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            7777654322  2333445899999999999999998866544

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=97.20  E-value=0.0014  Score=58.34  Aligned_cols=103  Identities=10%  Similarity=-0.039  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcC----------------CChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHH-HH
Q 042242           26 DAKNVAVIFGV----------------TGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDI-KR   88 (303)
Q Consensus        26 ~~~~~vlVtGa----------------tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l-~~   88 (303)
                      +.+++|+||||                ||.+|..+++.|. ..|++|+.+.++.....  ...  +..+|+.+.+++ +.
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~-~~Ga~V~~~~g~~~~~~--~~~--~~~~~v~~~~~~~~~  257 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAY-KRGADVTLITGPVSLLT--PPG--VKSIKVSTAEEMLEA  257 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHH-HCCCEEEEeCCCCccCC--CCC--cEEEEeccHHHHHHH
Confidence            56899999998                4789999999999 78999999987754321  122  345788888777 54


Q ss_pred             HH----hccCceeEEeecccccCCh--H----HHHHHHHHHHHHHHHHHHHHhhc
Q 042242           89 KL----TLLEDVTHIFWVTWASQFA--S----DMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        89 ~~----~~~~~V~~~~~~~~~~~~~--~----~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      ++    ..+|.+++.|+.+......  .    ...+.+..|+.-+..+++.+++.
T Consensus       258 ~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~  312 (390)
T TIGR00521       258 ALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKI  312 (390)
T ss_pred             HHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhh
Confidence            44    2355577776654321110  0    00012345556666677666654

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.11  E-value=0.001  Score=49.14  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=28.6

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ||.|+||||++|+.|++.|.+...+++..+..+..
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            69999999999999999999777888555554443

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=97.07  E-value=0.0013  Score=54.34  Aligned_cols=63  Identities=17%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             cCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccCceeEEeecc
Q 042242           35 GVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTHIFWVT  103 (303)
Q Consensus        35 GatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~~~~~~  103 (303)
                      .++|.||++++++|+ ..|++|++++|.... .. .+   ...+|+.+.+++.+.++       .+|.++|.|+..
T Consensus        22 ~SSGgIG~AIA~~la-~~Ga~Vvlv~~~~~l-~~-~~---~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv~   91 (227)
T TIGR02114        22 HSTGHLGKIITETFL-SAGHEVTLVTTKRAL-KP-EP---HPNLSIREIETTKDLLITLKELVQEHDILIHSMAVS   91 (227)
T ss_pred             CcccHHHHHHHHHHH-HCCCEEEEEcChhhc-cc-cc---CCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEec
Confidence            348999999999999 689999998864221 10 01   23478888766655432       356688887643

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.06  E-value=0.0011  Score=58.32  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      +++|.|+||||++|+.+++.|....+++++++.++.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~   37 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS   37 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc
Confidence            479999999999999999999855688987777643

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.04  E-value=0.0092  Score=53.92  Aligned_cols=105  Identities=11%  Similarity=0.050  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC-------CC--eEEEEecCCcccc-----cc------CCCeEEEEecCCCHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA-------NW--KVYGIARKPEITA-----IQ------SSSYCFISCDLLNPLDIK   87 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~-------g~--~V~~~~r~~~~~~-----~~------~~~~~~~~~D~~~~~~l~   87 (303)
                      .-+|.|+|++|.||.+++..|+ ..       +.  ++..+++++....     +.      ..++.+..   .+    .
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~-~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~---~~----y  171 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLA-SGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI---DP----Y  171 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHH-hcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec---CC----H
Confidence            4599999999999999999998 45       44  6888898876642     00      01121111   12    3


Q ss_pred             HHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhh-ccCCccEEEE
Q 042242           88 RKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILP-RAKALKHVSL  142 (303)
Q Consensus        88 ~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~~~~~~~~  142 (303)
                      +.++++|.|+..++..  .....+..+.++.|..-+..+...+.+ +.+..+.++.
T Consensus       172 e~~kdaDiVVitAG~p--rkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVV  225 (444)
T PLN00112        172 EVFQDAEWALLIGAKP--RGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVV  225 (444)
T ss_pred             HHhCcCCEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc
Confidence            5788888666665543  223334455899999999999999998 4655544433

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.02  E-value=0.00098  Score=48.72  Aligned_cols=62  Identities=27%  Similarity=0.414  Sum_probs=47.6

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      |+|+| .|-+|..+++.|. +.+++|+++++++.... ....++.++.+|.++++.++++ ++.++
T Consensus         1 vvI~G-~g~~~~~i~~~L~-~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~   64 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLK-EGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKAD   64 (116)
T ss_dssp             EEEES--SHHHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCES
T ss_pred             eEEEc-CCHHHHHHHHHHH-hCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccC
Confidence            68889 5899999999999 57779999999986643 3345689999999999988764 33444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.01  E-value=0.00012  Score=55.29  Aligned_cols=72  Identities=15%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCccccc---cCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAI---QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ...+++|+|.|+ |..|+.++..|. ..|.+ |+++.|+..+...   ...+..+-..++.+   +.+.+..+|.|+++.
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~-~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~~~~DivI~aT   83 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALA-ALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEALQEADIVINAT   83 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHH-HTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHHHTESEEEE-S
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHH-HcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHHhhCCeEEEec
Confidence            346789999995 999999999999 56877 9999998766431   11122222334433   447788888777774


Q ss_pred             e
Q 042242          101 W  101 (303)
Q Consensus       101 ~  101 (303)
                      .
T Consensus        84 ~   84 (135)
T PF01488_consen   84 P   84 (135)
T ss_dssp             S
T ss_pred             C
Confidence            3

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.95  E-value=0.0034  Score=50.64  Aligned_cols=103  Identities=14%  Similarity=0.092  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCe--EEEEecCCccccccCCCeEEEE--------ecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWK--VYGIARKPEITAIQSSSYCFIS--------CDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~--V~~~~r~~~~~~~~~~~~~~~~--------~D~~~~~~l~~~~~~---   92 (303)
                      .|.+.+||||++-.||..++..+. ..+-+  +.+..|....    ..++.+..        +|+.....+.+..+.   
T Consensus         4 ~~r~villTGaSrgiG~~~v~~i~-aed~e~~r~g~~r~~a~----~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~   78 (253)
T KOG1204|consen    4 NMRKVILLTGASRGIGTGSVATIL-AEDDEALRYGVARLLAE----LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRK   78 (253)
T ss_pred             ccceEEEEecCCCCccHHHHHHHH-hcchHHHHHhhhccccc----ccceEEEecCCcceechHHHHHHHHHHHHhhhhh
Confidence            366889999999999999999888 45545  4444444322    23333333        444444433333321   


Q ss_pred             ----cCceeEEeecccc-------cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 ----LEDVTHIFWVTWA-------SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 ----~~~V~~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                          .+.|||-|+....       ..+...+..+++.|+-+...+...+...
T Consensus        79 k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~  130 (253)
T KOG1204|consen   79 KGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPK  130 (253)
T ss_pred             cCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHH
Confidence                1237776654322       1223344558999999888777766654

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.93  E-value=0.0026  Score=55.75  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC---eEEEEecCCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW---KVYGIARKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~   64 (303)
                      ++|+|.||||++|+.|++.|. +.+|   ++..+.++..
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~   39 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARS   39 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEcccc
Confidence            589999999999999999998 5554   5688877644

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.84  E-value=0.006  Score=51.43  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=28.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe-cCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIA-RKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~-r~~   63 (303)
                      .+|.|+|++|.+|+.+++.+.+..++++.++. +++
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~   37 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG   37 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            58999999999999999988755678966644 444

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=96.84  E-value=0.0074  Score=51.77  Aligned_cols=104  Identities=19%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc---cc--------CCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA---IQ--------SSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~---~~--------~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      +||.|+|| |+||+.++..|+ ..+  -++.+++.......   .+        .... .+.+| .+    .+.++++|.
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~-~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~-~i~~~-~~----y~~~~~aDi   72 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLL-LQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDV-KITGD-GD----YEDLKGADI   72 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHh-cccccceEEEEEcccccccchhcchhhcchhccCce-EEecC-CC----hhhhcCCCE
Confidence            48999998 999999999997 333  37999999844332   10        0111 12222 11    357788886


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      |+..++.  +.+...+..+.++.|..-...+.+.+.+.++..+.++.
T Consensus        73 VvitAG~--prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVv  117 (313)
T COG0039          73 VVITAGV--PRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVV  117 (313)
T ss_pred             EEEeCCC--CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            6666543  33444445558999999999999999988765555444

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.81  E-value=0.0062  Score=51.58  Aligned_cols=109  Identities=12%  Similarity=-0.049  Sum_probs=69.0

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCC----CeEEEEecCCccccc---cCCCe-EE-EEecCCCHHHHHHHHhccCceeEEee
Q 042242           31 AVIFGVTGLVGKELARRLISTAN----WKVYGIARKPEITAI---QSSSY-CF-ISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g----~~V~~~~r~~~~~~~---~~~~~-~~-~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      |.|+||+|.+|..++..|+ ..+    .+|.++++++.+...   +..+. .. ....+.-..++.+.++++|.|+..+.
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence            5799998999999999998 456    689999988755320   00000 00 01111112234578889986666654


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      .....  .....+....|......+.+.+.+.++.-..+..
T Consensus        80 ~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~  118 (263)
T cd00650          80 VGRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV  118 (263)
T ss_pred             CCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            43222  2223347889999999999999988766554443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.80  E-value=0.024  Score=49.02  Aligned_cols=103  Identities=11%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----c------cC-CCeEEEEecCCCHHHHHHHHhccCc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----I------QS-SSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~------~~-~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ||.|+|+ |.||+.++..|+ ..+.  ++.+++..+....     +      .. ..+.+..+|       .+.++++|.
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~-~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~aDi   71 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYAL-ALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDCADADI   71 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHH-hcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCCCCE
Confidence            5889997 999999999998 3443  5999998765432     1      11 123333322       357888886


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      |+..++....+....+..+.+..|..-...+...+.+.++.-+.++
T Consensus        72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv  117 (307)
T cd05290          72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL  117 (307)
T ss_pred             EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence            6666554322211111345899999999999999998876554433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=96.79  E-value=0.019  Score=47.87  Aligned_cols=96  Identities=14%  Similarity=-0.033  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccC--ceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLE--DVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~--~V~~~~~~~~  104 (303)
                      |+++|||+|||+= |+.|++.|. +.|+.|++..-..... .....+.++.+-+.+.+.+.+.++..+  .|+...++  
T Consensus         1 ~~~~IlvlgGT~e-gr~la~~L~-~~g~~v~~Svat~~g~-~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHP--   75 (248)
T PRK08057          1 MMPRILLLGGTSE-ARALARALA-AAGVDIVLSLAGRTGG-PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHP--   75 (248)
T ss_pred             CCceEEEEechHH-HHHHHHHHH-hCCCeEEEEEccCCCC-cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCc--
Confidence            4578999998765 999999998 6789977766555333 334577888889889999999998655  35555221  


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                         ...          ..+.++.++|++.+....++
T Consensus        76 ---fA~----------~is~~a~~ac~~~~ipyiR~   98 (248)
T PRK08057         76 ---YAA----------QISANAAAACRALGIPYLRL   98 (248)
T ss_pred             ---cHH----------HHHHHHHHHHHHhCCcEEEE
Confidence               111          22456778888775444443

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0022  Score=55.60  Aligned_cols=72  Identities=17%  Similarity=0.259  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHH-HHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPL-DIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~-~l~~~~~~~~~V~~~   99 (303)
                      ++++||++| +||+...++..|.++...+|++-+|.-.+..  .....++-+..|+.+.+ .++..++..|.++-+
T Consensus         1 ~~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSL   75 (445)
T KOG0172|consen    1 TKKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISL   75 (445)
T ss_pred             CCcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHhhhcccceeeee
Confidence            357899999 7999999999998667788999998765543  23345888999999988 899999999876666

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.76  E-value=0.011  Score=51.46  Aligned_cols=105  Identities=10%  Similarity=0.032  Sum_probs=67.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc---c--cC----CCeE-EEEecCCCHHHHHHHHhccCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA---I--QS----SSYC-FISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~---~--~~----~~~~-~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ..+||.|+|| |.+|+.++..|. ..+ .+|.++++++....   .  ..    .+.. .+.+    ..+.+ .++++|.
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~----~~d~~-~l~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG----TNNYE-DIKDSDV   76 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe----CCCHH-HhCCCCE
Confidence            4579999996 999999999887 456 67999998775431   0  00    0110 1111    11234 7788886


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      |+..++.....  ..+..+.+..|..-...+.+.+.+.++.-..+
T Consensus        77 VVitag~~~~~--g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vi  119 (319)
T PTZ00117         77 VVITAGVQRKE--EMTREDLLTINGKIMKSVAESVKKYCPNAFVI  119 (319)
T ss_pred             EEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            66665543222  22334478899999999999998887655333

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=96.72  E-value=0.24  Score=40.33  Aligned_cols=107  Identities=12%  Similarity=0.091  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhcc----
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLL----   93 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~----   93 (303)
                      +.+|++||+|-.  --|++.|++.|. +.|.++......+.-..      .+...-.+++||+.+.+++...|..+    
T Consensus         4 L~GK~~lI~Gvan~rSIAwGIAk~l~-~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~   82 (259)
T COG0623           4 LEGKRILIMGVANNRSIAWGIAKALA-EQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKW   82 (259)
T ss_pred             cCCceEEEEEecccccHHHHHHHHHH-HcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhh
Confidence            357999999975  569999999998 78989777766542111      11123357899999999888877643    


Q ss_pred             ---CceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           94 ---EDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        94 ---~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                         |.++|+.+-+.        .+.+.+.-....++..-++..+.++++..
T Consensus        83 g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~l  133 (259)
T COG0623          83 GKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPL  133 (259)
T ss_pred             CcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHh
Confidence               44888843222        11112222123344445556666666655

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.71  E-value=0.0027  Score=56.03  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      +|+.+|.|+||||++|+.+++.|......+++++.++.
T Consensus         1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~   38 (349)
T PRK08664          1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE   38 (349)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence            35689999999999999999999855566888885544

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.71  E-value=0.0093  Score=51.73  Aligned_cols=104  Identities=15%  Similarity=0.060  Sum_probs=64.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc---cc--CC-CeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA---IQ--SS-SYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---~~--~~-~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      +||.|+|+ |.+|+.++..|. ..|. +|+++++++....   ..  .. ........+....+. +.++++|.|+.+++
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la-~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLA-LKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            69999997 999999999998 4554 8999999765432   00  00 000000011101112 35788886666654


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      .+..  ......+.+..|..-...+++.+.+.++.-
T Consensus        80 ~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~  113 (307)
T PRK06223         80 VPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDA  113 (307)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            4332  222333478899999999999888876543

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.65  E-value=0.0097  Score=51.59  Aligned_cols=98  Identities=13%  Similarity=0.059  Sum_probs=65.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----ccC-----CCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----IQS-----SSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~~~-----~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ++|.|.|+ |.+|..++..|+ ..|  .+|.++++++....     +..     ....+..   .+   . +.++++|.|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d---~-~~l~~aDiV   71 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GD---Y-ADCKGADVV   71 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CC---H-HHhCCCCEE
Confidence            37999996 999999999998 566  57999999875432     110     1111111   22   2 357888866


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      +.++.......  .+..+....|......+++.+.+.++.-
T Consensus        72 iita~~~~~~~--~~r~dl~~~n~~i~~~~~~~l~~~~~~g  110 (308)
T cd05292          72 VITAGANQKPG--ETRLDLLKRNVAIFKEIIPQILKYAPDA  110 (308)
T ss_pred             EEccCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            66655443322  2233478999999999999998876543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.63  E-value=0.012  Score=50.97  Aligned_cols=105  Identities=11%  Similarity=0.037  Sum_probs=64.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc---c--cCCCe-EEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA---I--QSSSY-CFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---~--~~~~~-~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ++|.|+|+ |++|..++..|+ ..|+ +|+++++.+....   .  ..+.. ......+.-..++.+ ++++|.|+.+++
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAG   78 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCC
Confidence            58999995 999999999998 5565 8999998654321   0  00000 000011111112333 677776666655


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      .+..  ...+..+.+..|......+++.+.+..+..+
T Consensus        79 ~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~  113 (305)
T TIGR01763        79 LPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPI  113 (305)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            4322  2223344789999999999999988765443

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.61  E-value=0.043  Score=47.61  Aligned_cols=105  Identities=10%  Similarity=0.008  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----cc-----CCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----IQ-----SSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~~-----~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ..||.|+|+ |.||+.++..|+ ..+  -++.+++.++....     +.     .....+...  .|   .+ .++++|.
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~-~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~d---y~-~~~~adi   74 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISIL-AKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KD---YS-VTANSKV   74 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CC---HH-HhCCCCE
Confidence            359999995 999999999997 334  35999998765432     00     011122211  12   22 4788886


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      |+..++....  ...+..+.+..|..-...+.+.+.+.+++-..++.
T Consensus        75 vvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivv  119 (312)
T cd05293          75 VIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVV  119 (312)
T ss_pred             EEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence            6665655332  22334458999999999999999988665544433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.56  E-value=0.0095  Score=46.61  Aligned_cols=55  Identities=25%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ...+++|+|+|+++.+|..+++.|. ..|.+|+++.|+.                    +.+.+.++++|.||.+.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~-~~g~~V~v~~r~~--------------------~~l~~~l~~aDiVIsat   95 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLL-NRNATVTVCHSKT--------------------KNLKEHTKQADIVIVAV   95 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHh-hCCCEEEEEECCc--------------------hhHHHHHhhCCEEEEcC
Confidence            3467999999986678999999998 6788898888763                    34667888888666553

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK04148 hypothetical protein; Provisional

Probab=96.56  E-value=0.0043  Score=46.27  Aligned_cols=62  Identities=18%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      +++|++.| .| -|..++..|. +.|++|++++.++.... .....++++..|+.++..  ++-+++|
T Consensus        17 ~~kileIG-~G-fG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~--~~y~~a~   79 (134)
T PRK04148         17 NKKIVELG-IG-FYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNL--EIYKNAK   79 (134)
T ss_pred             CCEEEEEE-ec-CCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCH--HHHhcCC
Confidence            46899999 67 8999999998 68999999999987533 234567899999998764  3445555

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.51  E-value=0.0052  Score=56.33  Aligned_cols=68  Identities=16%  Similarity=0.013  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ++|+|+|+|+++ +|..+++.|+ +.|++|++.++......      ....++.++.+|..+     +.+.+.|.|++.+
T Consensus         4 ~~k~v~iiG~g~-~G~~~A~~l~-~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~d~vv~~~   76 (450)
T PRK14106          4 KGKKVLVVGAGV-SGLALAKFLK-KLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE-----EFLEGVDLVVVSP   76 (450)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch-----hHhhcCCEEEECC
Confidence            468999999766 9999999999 79999999999753211      123367777777766     2345566566554


Q ss_pred             e
Q 042242          101 W  101 (303)
Q Consensus       101 ~  101 (303)
                      +
T Consensus        77 g   77 (450)
T PRK14106         77 G   77 (450)
T ss_pred             C
Confidence            3

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=96.49  E-value=0.029  Score=46.76  Aligned_cols=110  Identities=12%  Similarity=-0.040  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCccc-cccCCCe--EEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEIT-AIQSSSY--CFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~-~~~~~~~--~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      .+-||.|+||+|.||+.|...|..+.... ..+.+-...+. ......+  .-......-.+.++..++++|.|+.-|+.
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGV  106 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGV  106 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCC
Confidence            35699999999999999988775222222 22222221110 0000000  01112334346899999999965544444


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                        +.+......+.+++|..-...+..++.+.|++..
T Consensus       107 --PRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~  140 (345)
T KOG1494|consen  107 --PRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNAL  140 (345)
T ss_pred             --CCCCCCcHHHhhhcchHHHHHHHHHHHhhCccce
Confidence              2333233334899999999999999998877643

>PLN02602 lactate dehydrogenase

Probab=96.48  E-value=0.0088  Score=52.60  Aligned_cols=104  Identities=11%  Similarity=0.060  Sum_probs=68.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----cc-----CCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----IQ-----SSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~~-----~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +||.|+|+ |.||+.++..|+ ..+.  ++.+++.++....     +.     .....+ .++ .+   . +.++++|.|
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~-~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i-~~~-~d---y-~~~~daDiV  109 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTIL-TQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKI-LAS-TD---Y-AVTAGSDLC  109 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEE-EeC-CC---H-HHhCCCCEE
Confidence            59999995 999999999998 3443  6999998775432     00     111222 211 12   2 348888866


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      +.+++.+..  ...+..+.+..|..-...+.+.+.+.++.-+.++.
T Consensus       110 VitAG~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivv  153 (350)
T PLN02602        110 IVTAGARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIV  153 (350)
T ss_pred             EECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            666655322  22334458999999999999999988766544433

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.46  E-value=0.042  Score=49.77  Aligned_cols=98  Identities=11%  Similarity=-0.026  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC---C----CeEEEEecC--Ccccc-----------ccCCCeEEEEecCCCHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA---N----WKVYGIARK--PEITA-----------IQSSSYCFISCDLLNPLDIK   87 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~---g----~~V~~~~r~--~~~~~-----------~~~~~~~~~~~D~~~~~~l~   87 (303)
                      .-+|+||||+|.||.+|+-.|. ++   |    ..+.+++..  .....           ....++.+. .|      -.
T Consensus       123 p~~V~vtgAag~i~Y~l~~~ia-~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~------~~  194 (452)
T cd05295         123 PLQVCITNASAPLCYHLIPSLA-SGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD------LD  194 (452)
T ss_pred             ceEEEEecCcHHHHHHHHHHHh-CCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC------CH
Confidence            4689999999999999999998 32   2    235555553  21110           011123222 11      13


Q ss_pred             HHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC
Q 042242           88 RKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK  135 (303)
Q Consensus        88 ~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~  135 (303)
                      +.|+++|+|+.+++.+  .....+..+.++.|..-+..+..++.+..+
T Consensus       195 ea~~daDvvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~  240 (452)
T cd05295         195 VAFKDAHVIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAK  240 (452)
T ss_pred             HHhCCCCEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6888888666665543  333334455899999999999999998755

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.36  E-value=0.0077  Score=55.23  Aligned_cols=68  Identities=19%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHH-HhccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRK-LTLLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V   96 (303)
                      ..++|+|+|+ |.+|+.+++.|. ..|++|+++++++....   ....++.++.+|..+.+.++++ ++.++.|
T Consensus       230 ~~~~iiIiG~-G~~g~~l~~~L~-~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~v  301 (453)
T PRK09496        230 PVKRVMIVGG-GNIGYYLAKLLE-KEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAF  301 (453)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEE
Confidence            4589999995 999999999998 68999999999876532   1224678899999999887554 3444433

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.36  E-value=0.0054  Score=54.03  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=28.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~   63 (303)
                      ++|.|+||||++|..+++.|.+..+++++.+ +++.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~   36 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE   36 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch
Confidence            4799999999999999999996568887754 5443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.35  E-value=0.048  Score=48.54  Aligned_cols=97  Identities=10%  Similarity=-0.020  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-------eEEEE--ecCCcccc-----c------cCCCeEEEEecCCCHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-------KVYGI--ARKPEITA-----I------QSSSYCFISCDLLNPLDIK   87 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~--~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~   87 (303)
                      .-||.|+||+|.+|..++-.|. ..+.       .++++  +++.+...     +      ...++.+...   +    .
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~-~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~---~----y  115 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLA-SGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID---P----Y  115 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC---C----H
Confidence            4699999999999999999998 3332       23333  66554432     0      0112211111   1    3


Q ss_pred             HHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042242           88 RKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA  134 (303)
Q Consensus        88 ~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~  134 (303)
                      +.++++|.|+..++.+  .....+..+.+..|..-+..+...+.++.
T Consensus       116 ~~~kdaDIVVitAG~p--rkpg~tR~dll~~N~~I~k~i~~~I~~~a  160 (387)
T TIGR01757       116 EVFEDADWALLIGAKP--RGPGMERADLLDINGQIFADQGKALNAVA  160 (387)
T ss_pred             HHhCCCCEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5788888666666543  22333445589999999999999999864

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.34  E-value=0.073  Score=46.39  Aligned_cols=102  Identities=15%  Similarity=0.070  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc---c--------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA---I--------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---~--------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      .+||.|+| +|.+|+.++..++ ..|. +|.++++++....   .        .....++..  ..|   . +.++++|.
T Consensus         6 ~~KI~IIG-aG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d---~-~~l~~aDi   77 (321)
T PTZ00082          6 RRKISLIG-SGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNN---Y-EDIAGSDV   77 (321)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCC---H-HHhCCCCE
Confidence            36999999 6999999999887 5675 7999999876431   0        011122221  122   2 36788887


Q ss_pred             eeEEeecccccCC---hHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242           96 VTHIFWVTWASQF---ASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus        96 V~~~~~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      |+..+........   ..+..+.+..|..-...+++.+.+.++.-
T Consensus        78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a  122 (321)
T PTZ00082         78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA  122 (321)
T ss_pred             EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            7777654322111   01334578889999999999998887654

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.28  E-value=0.02  Score=51.10  Aligned_cols=65  Identities=20%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      +++|+|+|+ |.+|+.+++.+. +.|++|++++..+........ -..+.+|..|.+.+.+..+.+|.
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~-~lG~~v~~~d~~~~~pa~~~a-d~~~~~~~~D~~~l~~~a~~~dv   66 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAA-PLGYKVIVLDPDPDSPAAQVA-DEVIVADYDDVAALRELAEQCDV   66 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEeCCCCCchhHhC-ceEEecCCCCHHHHHHHHhcCCE
Confidence            368999995 899999999998 689999999987654221111 13556899999999999988874

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.27  E-value=0.0072  Score=56.97  Aligned_cols=61  Identities=18%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK   89 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~   89 (303)
                      +..+|+|+| .|-+|+.+++.|. +.|++|+++++++++.. ....+..++.+|.+|++.++++
T Consensus       416 ~~~hiiI~G-~G~~G~~la~~L~-~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a  477 (558)
T PRK10669        416 ICNHALLVG-YGRVGSLLGEKLL-AAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLA  477 (558)
T ss_pred             cCCCEEEEC-CChHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhc
Confidence            356899999 7999999999998 68999999999887643 3346888999999998877653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.25  E-value=0.0066  Score=49.90  Aligned_cols=37  Identities=35%  Similarity=0.276  Sum_probs=32.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.|+||+|.+|+.++..|. +.|++|++.+|++++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~~~~~   37 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRDLEKA   37 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcCHHHH
Confidence            379999999999999999998 6789999999987553

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.24  E-value=0.0088  Score=52.53  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=25.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeE---EEEecCC
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKV---YGIARKP   63 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V---~~~~r~~   63 (303)
                      +|.|.||||++|..|++.|. +.+|.+   ..+.+..
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~-~~~hp~~~l~~~as~~   36 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILE-ERNFPIDKLVLLASDR   36 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHH-hCCCChhhEEEEeccc
Confidence            58999999999999999997 556663   3444543

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.24  E-value=0.011  Score=51.66  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC---eEEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW---KVYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~   62 (303)
                      .+|.|+||||++|..+++.|. +.+|   ++..+...
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~-~~~hP~~~l~~v~s~   40 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILE-ERDFPVGTLHLLASS   40 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHh-hCCCCceEEEEEECc
Confidence            689999999999999999998 3343   44455443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.23  E-value=0.0093  Score=44.21  Aligned_cols=69  Identities=17%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCccccccCCCeE-EE---EecCCCHHHHHHHHhccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYC-FI---SCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~-~~---~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ++|.|.|++|.+|+.+++.+.+..+++ |-+++|+++...  ..++- +.   ...+.-.+++++.++.+|+++..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~--g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV--GKDVGELAGIGPLGVPVTDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT--TSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc--cchhhhhhCcCCcccccchhHHHhcccCCEEEEc
Confidence            379999999999999999999668999 555666652211  00000 00   01111124567788888866555

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.23  E-value=0.018  Score=50.69  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=50.1

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh----ccCceeE
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT----LLEDVTH   98 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~----~~~~V~~   98 (303)
                      ....+++|||.||+|.+|+..++-.. ..+ ..|++.++.+........+.. ...|+.+.+..++..+    +.|.|+.
T Consensus       154 ~~~~g~~vLv~ggsggVG~~aiQlAk-~~~~~~v~t~~s~e~~~l~k~lGAd-~vvdy~~~~~~e~~kk~~~~~~DvVlD  231 (347)
T KOG1198|consen  154 KLSKGKSVLVLGGSGGVGTAAIQLAK-HAGAIKVVTACSKEKLELVKKLGAD-EVVDYKDENVVELIKKYTGKGVDVVLD  231 (347)
T ss_pred             ccCCCCeEEEEeCCcHHHHHHHHHHH-hcCCcEEEEEcccchHHHHHHcCCc-EeecCCCHHHHHHHHhhcCCCccEEEE
Confidence            34456799999999999999998887 567 445555554433222333433 2378888766666655    3566777


Q ss_pred             Eeec
Q 042242           99 IFWV  102 (303)
Q Consensus        99 ~~~~  102 (303)
                      +.+.
T Consensus       232 ~vg~  235 (347)
T KOG1198|consen  232 CVGG  235 (347)
T ss_pred             CCCC
Confidence            7554

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.22  E-value=0.0096  Score=47.21  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=44.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|-||+.+++.|. .-|.+|++.+|...... .....+.        ..+++++++.+|.|+
T Consensus        33 ~l~g~tvgIiG-~G~IG~~vA~~l~-~fG~~V~~~d~~~~~~~~~~~~~~~--------~~~l~ell~~aDiv~   96 (178)
T PF02826_consen   33 ELRGKTVGIIG-YGRIGRAVARRLK-AFGMRVIGYDRSPKPEEGADEFGVE--------YVSLDELLAQADIVS   96 (178)
T ss_dssp             -STTSEEEEES-TSHHHHHHHHHHH-HTT-EEEEEESSCHHHHHHHHTTEE--------ESSHHHHHHH-SEEE
T ss_pred             ccCCCEEEEEE-EcCCcCeEeeeee-cCCceeEEecccCChhhhcccccce--------eeehhhhcchhhhhh
Confidence            44689999999 7999999999998 78999999999886532 1111121        124667888888533

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.17  E-value=0.015  Score=51.94  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      ..++|.|.||.|.+|..++..|. ..|++|++.+|++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~-~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLT-LSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHH-HCCCeEEEeCCCc
Confidence            34789999999999999999998 6899999999863

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.0069  Score=51.66  Aligned_cols=75  Identities=16%  Similarity=0.049  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      +...++|-|||||.|..++++|+ ..|..-.+-.|+..+..  -...+.++-..++-+++.+++.+...++|+|++++
T Consensus         5 ~e~d~iiYGAtGy~G~lvae~l~-~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGP   81 (382)
T COG3268           5 REYDIIIYGATGYAGGLVAEYLA-REGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGP   81 (382)
T ss_pred             cceeEEEEccccchhHHHHHHHH-HcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccc
Confidence            34689999999999999999999 67777766677765543  11122233333444588899999999999999654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.09  E-value=0.0054  Score=47.29  Aligned_cols=69  Identities=16%  Similarity=0.086  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      .+++|+|+|+ |.+|..+++.|. .. +++|++.+|++.+...  ...+...+..+..+.+   +.++++|.|+.+.
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Dvvi~~~   89 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALA-ELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLE---ELLAEADLIINTT   89 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchh---hccccCCEEEeCc
Confidence            4579999996 999999999998 45 4789999998655321  1111111123344433   3467777666553

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.08  E-value=0.015  Score=49.73  Aligned_cols=68  Identities=18%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ...+++|+|+| .|.+|+.+++.|. ..|++|++.+|++.+.. ....+...+     ..+.+.+.++++|.|+++
T Consensus       148 ~l~gk~v~IiG-~G~iG~avA~~L~-~~G~~V~v~~R~~~~~~~~~~~g~~~~-----~~~~l~~~l~~aDiVint  216 (287)
T TIGR02853       148 TIHGSNVMVLG-FGRTGMTIARTFS-ALGARVFVGARSSADLARITEMGLIPF-----PLNKLEEKVAEIDIVINT  216 (287)
T ss_pred             CCCCCEEEEEc-ChHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHCCCeee-----cHHHHHHHhccCCEEEEC
Confidence            33578999999 5999999999998 67899999999875422 111122221     234567788888866665

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.07  E-value=0.016  Score=49.99  Aligned_cols=100  Identities=11%  Similarity=0.065  Sum_probs=66.3

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc---cc-----C--CCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           31 AVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA---IQ-----S--SSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~---~~-----~--~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      |.|.|+ |.+|+.++..|+ ..|  .+++++++++....   ..     .  ...++...  .+    .+.++++|.|+.
T Consensus         1 i~iiGa-G~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~aDiVIi   72 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADADIVVI   72 (300)
T ss_pred             CEEECC-CHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCCCEEEE
Confidence            468895 899999999998 456  57999999876542   00     0  11122211  12    348888887777


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      +++.+...  ..+..+.+..|..-...+.+.+++.++.-..+
T Consensus        73 tag~p~~~--~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~vi  112 (300)
T cd00300          73 TAGAPRKP--GETRLDLINRNAPILRSVITNLKKYGPDAIIL  112 (300)
T ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            76654322  22334478999999999999999887555443

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.07  E-value=0.015  Score=50.13  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |+.||.|.||+|+.|..|++.|......+++..+.+.
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~   37 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE   37 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh
Confidence            3579999999999999999999966778866666544

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=96.05  E-value=0.034  Score=50.01  Aligned_cols=68  Identities=18%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--ccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--LLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~   97 (303)
                      ..|+|+|+| +|..|+.++..+. +.|++|++++..+........+ .++.+|..|.+.+.+.++  .+|.|+
T Consensus        11 ~~~~ilIiG-~g~~~~~~~~a~~-~~G~~v~~~~~~~~~~~~~~ad-~~~~~~~~d~~~l~~~~~~~~id~vi   80 (395)
T PRK09288         11 SATRVMLLG-SGELGKEVAIEAQ-RLGVEVIAVDRYANAPAMQVAH-RSHVIDMLDGDALRAVIEREKPDYIV   80 (395)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCCCCchHHhhh-heEECCCCCHHHHHHHHHHhCCCEEE
Confidence            457999999 5899999999988 6899999999876542211111 245678889988888887  455333

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.99  E-value=0.011  Score=47.30  Aligned_cols=35  Identities=31%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |++.|.| +|.||+.|+.+|. ..||+|++-.|+.++
T Consensus         2 ~~~~i~G-tGniG~alA~~~a-~ag~eV~igs~r~~~   36 (211)
T COG2085           2 MIIAIIG-TGNIGSALALRLA-KAGHEVIIGSSRGPK   36 (211)
T ss_pred             cEEEEec-cChHHHHHHHHHH-hCCCeEEEecCCChh
Confidence            4666666 9999999999999 689999888777665

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.99  E-value=0.022  Score=48.60  Aligned_cols=54  Identities=20%  Similarity=0.219  Sum_probs=41.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ..+|+|+|+|++|.+|+.++..|+ ..|..|+++.|+.                    ..+.+.++.+|.|+++.
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~-~~gatVtv~~~~t--------------------~~L~~~~~~aDIvI~At  210 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLL-NANATVTICHSRT--------------------QNLPELVKQADIIVGAV  210 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHH-hCCCEEEEEeCCc--------------------hhHHHHhccCCEEEEcc
Confidence            357899999999999999999998 5777888877632                    23556667888677664

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.91  E-value=0.022  Score=49.11  Aligned_cols=66  Identities=20%  Similarity=0.187  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+++|+|+| .|.+|+.+++.|. ..|.+|++.+|++.... ....+.+++     ..+.+.+.++++|.||++
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~-~~Ga~V~v~~r~~~~~~~~~~~G~~~~-----~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLK-ALGANVTVGARKSAHLARITEMGLSPF-----HLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHcCCeee-----cHHHHHHHhCCCCEEEEC
Confidence            468999999 5889999999998 67889999999865432 122233332     234567788888877775

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.86  E-value=0.078  Score=46.57  Aligned_cols=36  Identities=28%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP   63 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   63 (303)
                      .+.++|+|.|+ |.+|++++..|. ..|. +|++++++.
T Consensus        22 L~~~~VlVvG~-GglGs~va~~La-~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGA-GALGTANAEMLV-RAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCc
Confidence            35679999995 999999999998 5787 699999864

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.82  E-value=0.031  Score=47.51  Aligned_cols=55  Identities=18%  Similarity=0.203  Sum_probs=43.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+++|+|+|+++.+|+.++..|+ ..|..|+.+.++.                    ..+.+.++.+|.|+...+
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~-~~gatVtv~~s~t--------------------~~l~~~~~~ADIVIsAvg  210 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLL-QKNASVTILHSRS--------------------KDMASYLKDADVIVSAVG  210 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHH-HCCCeEEEEeCCc--------------------hhHHHHHhhCCEEEECCC
Confidence            467899999999999999999998 6788999887653                    136678888886655543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.78  E-value=0.018  Score=54.80  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      ..+|+|+| .|-+|+.+++.|. +.|++++++++++.... ....+..++.+|.++++.++++ +++++
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~  466 (601)
T PRK03659        400 KPQVIIVG-FGRFGQVIGRLLM-ANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAE  466 (601)
T ss_pred             cCCEEEec-CchHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCC
Confidence            46899999 7999999999998 68999999999987643 3346788999999999987764 34444

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.73  E-value=0.0062  Score=51.98  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCccc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEIT   66 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~   66 (303)
                      ..+++|+|+|+ |.+|+.++..|. ..| .+|+++.|+..+.
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~-~~g~~~V~v~~R~~~~a  160 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLL-DLGVAEITIVNRTVERA  160 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHH-HcCCCEEEEEeCCHHHH
Confidence            35689999995 999999999998 577 6799999987654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.64  E-value=0.016  Score=45.17  Aligned_cols=62  Identities=19%  Similarity=0.180  Sum_probs=42.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ++|-++| .|-+|+.+++.|+ +.||+|++.+|++.+.. +...+++.  +     ++..++++.+|.|+-+
T Consensus         2 ~~Ig~IG-lG~mG~~~a~~L~-~~g~~v~~~d~~~~~~~~~~~~g~~~--~-----~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    2 MKIGFIG-LGNMGSAMARNLA-KAGYEVTVYDRSPEKAEALAEAGAEV--A-----DSPAEAAEQADVVILC   64 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHH-HTTTEEEEEESSHHHHHHHHHTTEEE--E-----SSHHHHHHHBSEEEE-
T ss_pred             CEEEEEc-hHHHHHHHHHHHH-hcCCeEEeeccchhhhhhhHHhhhhh--h-----hhhhhHhhcccceEee
Confidence            6899999 6999999999999 68999999999876643 22223222  2     2355677777744443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.59  E-value=0.043  Score=48.26  Aligned_cols=27  Identities=33%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW   54 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~   54 (303)
                      +..+|.|.||||++|..|++.|. ..+|
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~-~~~h   32 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLT-DRDF   32 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHH-hCCC
Confidence            34689999999999999999997 5555

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.59  E-value=0.055  Score=46.78  Aligned_cols=98  Identities=14%  Similarity=0.052  Sum_probs=62.5

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc---c--cC------CCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           31 AVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA---I--QS------SSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---~--~~------~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      |.|+|+ |.+|..++..|. ..+. +|+++++++....   .  ..      ....+ ... .|   . +.++++|.|+.
T Consensus         1 I~IIGa-G~vG~~ia~~la-~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I-~~t-~d---~-~~l~dADiVIi   72 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLA-LKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV-TGT-ND---Y-EDIAGSDVVVI   72 (300)
T ss_pred             CEEECC-CHHHHHHHHHHH-hCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE-EEc-CC---H-HHhCCCCEEEE
Confidence            568996 999999999887 4565 9999999875431   0  00      01111 111 12   2 35788887776


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      ++..+..  ......+.+..|+.-...+++.+.+.++.-.
T Consensus        73 t~g~p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~  110 (300)
T cd01339          73 TAGIPRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAI  110 (300)
T ss_pred             ecCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            6654322  2233334678899999999998888765443

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=95.57  E-value=0.048  Score=48.76  Aligned_cols=65  Identities=17%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCcee
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVT   97 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~   97 (303)
                      ||+|+| +|..|..+++.+. +.|++|++++.++........+ ..+.+|..|.+.+.+.++.  +|.|+
T Consensus         1 kililG-~g~~~~~l~~aa~-~~G~~v~~~d~~~~~~~~~~ad-~~~~~~~~d~~~l~~~~~~~~id~v~   67 (380)
T TIGR01142         1 RVLLLG-SGELGKEVAIEAQ-RLGVEVIAVDRYANAPAMQVAH-RSYVINMLDGDALRAVIEREKPDYIV   67 (380)
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HcCCEEEEEeCCCCCchhhhCc-eEEEcCCCCHHHHHHHHHHhCCCEEE
Confidence            589999 6999999999998 6899999999976543221112 3456788999999888874  55343

This enzyme is an alternative to PurN (TIGR00639)

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.56  E-value=0.054  Score=47.01  Aligned_cols=63  Identities=14%  Similarity=0.125  Sum_probs=46.5

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|.| .|-||+.+++.|. .-|++|++.+|.+...    +++...    ...+++.++++++|.|+
T Consensus       133 ~l~g~tvgIvG-~G~IG~~vA~~l~-afG~~V~~~~~~~~~~----~~~~~~----~~~~~l~e~l~~aDvvv  195 (312)
T PRK15469        133 HREDFTIGILG-AGVLGSKVAQSLQ-TWGFPLRCWSRSRKSW----PGVQSF----AGREELSAFLSQTRVLI  195 (312)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCCCCC----CCceee----cccccHHHHHhcCCEEE
Confidence            34678999999 8999999999998 6899999999865431    122211    12456889999999533

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.55  E-value=0.023  Score=49.84  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=45.5

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|+|.|.| .|.||+.+++.|. .-|.+|++.+|.+........++     .   ..++.++++.+|. ++|+
T Consensus       147 ~L~gktvgIiG-~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~-----~---~~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        147 DVYGKTIGIIG-FGRIGQAVARRAK-GFGMRILYYSRTRKPEAEKELGA-----E---YRPLEELLRESDFVSLHV  212 (333)
T ss_pred             CCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEECCCCChhhHHHcCC-----E---ecCHHHHHhhCCEEEEeC
Confidence            44689999999 6999999999998 68999999998754321111111     1   1246778888885 4444

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.53  E-value=0.039  Score=47.88  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .++|.|.| +|.+|+.+++.|. ..||+|++.+|++.
T Consensus         4 ~m~I~iiG-~G~~G~~lA~~l~-~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILG-AGAWGSTLAGLAS-ANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHH-HCCCEEEEEeCCCC
Confidence            46899999 7999999999998 68999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.52  E-value=0.036  Score=37.40  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=30.3

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +|+|.| +|++|-.++..|. ..|.+|+++.|.+.-
T Consensus         1 ~vvViG-gG~ig~E~A~~l~-~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALA-ELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHH-HTTSEEEEEESSSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHH-HhCcEEEEEeccchh
Confidence            588999 6999999999998 689999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.49  E-value=0.084  Score=49.87  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      .++|+|+|+| +|.+|+.+++.+. +.|++|++++.++.......-+ ..+.++..|.+.+.++.+.+|.|
T Consensus        20 ~~~k~IgIIG-gGqlg~mla~aA~-~lG~~Vi~ld~~~~apa~~~AD-~~~v~~~~D~~~l~~~a~~~dvI   87 (577)
T PLN02948         20 VSETVVGVLG-GGQLGRMLCQAAS-QMGIKVKVLDPLEDCPASSVAA-RHVVGSFDDRAAVREFAKRCDVL   87 (577)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCCCCchhhhCc-eeeeCCCCCHHHHHHHHHHCCEE
Confidence            4678999999 6899999999998 6899999999876532211111 24458899999988888887743

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.49  E-value=0.035  Score=49.41  Aligned_cols=72  Identities=14%  Similarity=0.028  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccccc-CCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQ-SSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ..++|+|+|+ |-+|...++.|. ..|.+|++++|++.+.... ...-..+..+..+.+.+.+.++++|.|+.+.
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~-~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~  238 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMAN-GLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAV  238 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHH-HCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEcc
Confidence            3568999995 999999999998 6788999999986543211 1111123345667788888999888777664

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.49  E-value=0.073  Score=46.40  Aligned_cols=64  Identities=17%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ++|.|+| +|++|+-++..-. .-|++|++++-.+......- --.++..+.+|.+.+++..+.+|+
T Consensus         2 ~tvgIlG-GGQLgrMm~~aa~-~lG~~v~vLdp~~~~PA~~v-a~~~i~~~~dD~~al~ela~~~DV   65 (375)
T COG0026           2 KTVGILG-GGQLGRMMALAAA-RLGIKVIVLDPDADAPAAQV-ADRVIVAAYDDPEALRELAAKCDV   65 (375)
T ss_pred             CeEEEEc-CcHHHHHHHHHHH-hcCCEEEEecCCCCCchhhc-ccceeecCCCCHHHHHHHHhhCCE
Confidence            6899999 6999999999998 78999999998766533110 113566788899999999999985

>PLN02928 oxidoreductase family protein

Probab=95.48  E-value=0.035  Score=48.91  Aligned_cols=69  Identities=19%  Similarity=0.066  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccccc-----CCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQ-----SSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~-----~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ...+|+|.|.| .|-||+.+++.|. .-|.+|++.+|........     ...+..+........++.++++.+|.
T Consensus       156 ~l~gktvGIiG-~G~IG~~vA~~l~-afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDi  229 (347)
T PLN02928        156 TLFGKTVFILG-YGAIGIELAKRLR-PFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADI  229 (347)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHh-hCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCE
Confidence            45689999999 7999999999998 7899999999864321100     00111110011134568899999995

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.42  E-value=0.051  Score=49.19  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +|.|+| .|++|..++..|. +.||+|++.++++.+.
T Consensus         2 kI~vIG-lG~~G~~lA~~La-~~G~~V~~~d~~~~~v   36 (411)
T TIGR03026         2 KIAVIG-LGYVGLPLAALLA-DLGHEVTGVDIDQEKV   36 (411)
T ss_pred             EEEEEC-CCchhHHHHHHHH-hcCCeEEEEECCHHHH
Confidence            799999 7999999999998 6899999999987654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.42  E-value=0.22  Score=37.35  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   63 (303)
                      .++|+|.| .|-+|+.++..|. ..|. ++++++.+.
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            46999999 6999999999998 5676 499998753

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=95.41  E-value=0.028  Score=41.40  Aligned_cols=31  Identities=39%  Similarity=0.616  Sum_probs=26.8

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEe
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIA   60 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~   60 (303)
                      ++.|+|++|.+|..++..|....++++.++.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~   31 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALA   31 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEE
Confidence            5889999999999999999855789988873

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.40  E-value=0.042  Score=48.71  Aligned_cols=35  Identities=31%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      .++|.|.|.+|.||..+++.|.+..+++|++.++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~   38 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA   38 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            57999999999999999999984358899999885

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.38  E-value=0.032  Score=39.11  Aligned_cols=62  Identities=24%  Similarity=0.237  Sum_probs=40.0

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCC---CeEEEE-ecCCccccc--cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           30 VAVIFGVTGLVGKELARRLISTAN---WKVYGI-ARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~-~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ||.|+| +|.+|..|++.|+ ..|   ++|+.. .|++.+...  ..-++.+...      +..++++.+|.|+.+
T Consensus         1 kI~iIG-~G~mg~al~~~l~-~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~advvila   68 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLL-ASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD------DNEEAAQEADVVILA   68 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHH-HTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE------EHHHHHHHTSEEEE-
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HCCCCceeEEeeccCcHHHHHHHHHhhccccccC------ChHHhhccCCEEEEE
Confidence            578887 8999999999999 678   899966 777765431  1122232221      244577777754444

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.37  E-value=0.046  Score=48.26  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=27.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCe---EEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWK---VYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~---V~~~~r~   62 (303)
                      .+|.|.||||++|+.+++.|+.+..+.   ++.++..
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~   38 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS   38 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch
Confidence            589999999999999999666577776   6665553

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.34  E-value=0.047  Score=46.70  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ...+|+|.|+|.+|.+|+.++..|+ +.|+.|++..|+..
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~-~~gatVtv~~~~t~  194 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLL-QAHCSVTVVHSRST  194 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHH-HCCCEEEEECCCCC
Confidence            3468999999999999999999999 68999999977653

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.33  E-value=0.16  Score=44.61  Aligned_cols=37  Identities=24%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP   63 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   63 (303)
                      ..+.++|+|+| .|.+|+++++.|. ..|+ ++++++++.
T Consensus        21 ~L~~~~VlIiG-~GglGs~va~~La-~aGvg~i~lvD~D~   58 (338)
T PRK12475         21 KIREKHVLIVG-AGALGAANAEALV-RAGIGKLTIADRDY   58 (338)
T ss_pred             hhcCCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCc
Confidence            33567999999 5889999999999 6787 599999875

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.32  E-value=0.026  Score=53.87  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      .++|+|+| .|-+|+.+++.|. +.|+++++++.++.... ....+..++.+|.++++.++++ +++++
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~  466 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLL-SSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAE  466 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCC
Confidence            46899999 7999999999998 68999999999987654 3345788999999999977653 33444

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.31  E-value=0.092  Score=41.77  Aligned_cols=76  Identities=14%  Similarity=0.019  Sum_probs=47.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCC-HHHHHHHHhccCceeEEee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLN-PLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~-~~~l~~~~~~~~~V~~~~~  101 (303)
                      ...+|+|+|.|.+..+|+.|+..|+ +.|..|+.++.+.........+.........| ...+.+.++.+|.|+-..+
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~-~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG  135 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLA-NDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP  135 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHH-HCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence            4568999999999999999999998 68889998865432210000000011111122 2246778888885554433

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.30  E-value=0.095  Score=39.65  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=41.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +..+|+|+|.|.+.-+|..++..|. +.|..|+.+.++..                    ++++.++.+|.|+-.
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~-~~gatV~~~~~~t~--------------------~l~~~v~~ADIVvsA   78 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQ-RDGATVYSCDWKTI--------------------QLQSKVHDADVVVVG   78 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEeCCCCc--------------------CHHHHHhhCCEEEEe
Confidence            4467999999999999999999998 67888888765432                    255677778744444

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.29  E-value=0.037  Score=47.82  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |+.+|.|.||||++|..|++.|......++..+..+.
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~   37 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK   37 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            4579999999999999999999855666777776554

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.23  E-value=0.098  Score=40.51  Aligned_cols=55  Identities=20%  Similarity=0.164  Sum_probs=37.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      +..+|+|+|.|.++.+|+.|+..|. +.|..|+....+..                    .+++.++.+|.|+-..
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~-~~~atVt~~h~~T~--------------------~l~~~~~~ADIVVsa~   87 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLL-NKGATVTICHSKTK--------------------NLQEITRRADIVVSAV   87 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHH-HTT-EEEEE-TTSS--------------------SHHHHHTTSSEEEE-S
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHH-hCCCeEEeccCCCC--------------------cccceeeeccEEeeee
Confidence            3468999999999999999999998 67777776554432                    2556777777544443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.21  E-value=0.02  Score=49.73  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+++|+|+|+ |-+|..+++.|...++.+|++++|++.+..  ...-+..+     .+.+.+.+.+..+|.|+.+
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~-----~~~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNA-----VPLDELLELLNEADVVISA  245 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE-----EeHHHHHHHHhcCCEEEEC
Confidence            4689999995 999999999998434467999999876532  11112222     2334566778888755555

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.21  E-value=0.019  Score=45.80  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      |+|.|.| .||+|..++..|. ..||+|++++.++...
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA-~~G~~V~g~D~~~~~v   36 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALA-EKGHQVIGVDIDEEKV   36 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHH-HTTSEEEEE-S-HHHH
T ss_pred             CEEEEEC-CCcchHHHHHHHH-hCCCEEEEEeCChHHH
Confidence            5899998 8999999999998 7899999999887653

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=95.19  E-value=0.23  Score=42.88  Aligned_cols=97  Identities=12%  Similarity=0.023  Sum_probs=63.3

Q ss_pred             EEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           33 IFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        33 VtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      |.| +|.||+.++..|+ ..+.  ++.++++.+....     +      ....+.+..   .+    .+.++++|.|+..
T Consensus         1 iIG-aG~VG~~~a~~l~-~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~----~~~~~daDivVit   71 (299)
T TIGR01771         1 IIG-AGNVGSSTAFALL-NQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GD----YSDCKDADLVVIT   71 (299)
T ss_pred             CCC-cCHHHHHHHHHHH-hcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CC----HHHHCCCCEEEEC
Confidence            467 5999999999998 3443  5999998765432     0      111222221   22    3578888866666


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      ++.+..  ...+..+.+..|..-...+.+.+.++++.-+.+
T Consensus        72 ag~~rk--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi  110 (299)
T TIGR01771        72 AGAPQK--PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFL  110 (299)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            654322  223344589999999999999999886654433

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.18  E-value=0.019  Score=51.71  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=49.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      ..+++|+|+| +|-+|+.++..|. ..|. +|++..|+..+.......+.  .+.....+.+.+.+..+|.||++...
T Consensus       179 l~~kkvlviG-aG~~a~~va~~L~-~~g~~~I~V~nRt~~ra~~La~~~~--~~~~~~~~~l~~~l~~aDiVI~aT~a  252 (414)
T PRK13940        179 ISSKNVLIIG-AGQTGELLFRHVT-ALAPKQIMLANRTIEKAQKITSAFR--NASAHYLSELPQLIKKADIIIAAVNV  252 (414)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHH-HcCCCEEEEECCCHHHHHHHHHHhc--CCeEecHHHHHHHhccCCEEEECcCC
Confidence            3568999999 5999999999998 5675 59999998765431111110  01223345667888889877777443

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.17  E-value=0.065  Score=47.46  Aligned_cols=63  Identities=19%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      +|+|+|+ |.+|+.+++.+. +.|++|++++.++........+ +.+.+|..|.+.+.+..+.+|+
T Consensus         1 ~igiiG~-gql~~~l~~aa~-~lG~~v~~~d~~~~~p~~~~ad-~~~~~~~~d~~~i~~~a~~~dv   63 (352)
T TIGR01161         1 TVGILGG-GQLGRMLALAAR-PLGIKVHVLDPDANSPAVQVAD-HVVLAPFFDPAAIRELAESCDV   63 (352)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HcCCEEEEECCCCCCChhHhCc-eeEeCCCCCHHHHHHHHhhCCE
Confidence            4899995 899999999998 6899999999876443211112 2346789999999998888873

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=95.11  E-value=0.094  Score=47.93  Aligned_cols=74  Identities=15%  Similarity=0.034  Sum_probs=50.3

Q ss_pred             CCCCCEEEEEcC----------------CChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHH
Q 042242           25 VDAKNVAVIFGV----------------TGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKR   88 (303)
Q Consensus        25 ~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~   88 (303)
                      ...+++||||+|                ||-.|.+|++.+. ..|.+|+.+.-.-. .. ...+++++.++  ..+++.+
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~-~~GA~VtlI~Gp~~-~~-~p~~v~~i~V~--ta~eM~~  327 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAA-AAGAEVTLISGPVD-LA-DPQGVKVIHVE--SARQMLA  327 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHH-HCCCcEEEEeCCcC-CC-CCCCceEEEec--CHHHHHH
Confidence            367899999986                7999999999999 79999999984322 11 23456666544  4444444


Q ss_pred             HHhc---cCceeEEeecc
Q 042242           89 KLTL---LEDVTHIFWVT  103 (303)
Q Consensus        89 ~~~~---~~~V~~~~~~~  103 (303)
                      ++..   .|.+|+.|+.+
T Consensus       328 av~~~~~~Di~I~aAAVa  345 (475)
T PRK13982        328 AVEAALPADIAIFAAAVA  345 (475)
T ss_pred             HHHhhCCCCEEEEecccc
Confidence            4432   45577776554

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.05  E-value=0.063  Score=46.76  Aligned_cols=66  Identities=20%  Similarity=0.214  Sum_probs=46.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ..++|+|-|.| .|-||+.+++.|. .-|.+|++.++..+.......+       ..-.+++.++|+.+|. ++|+
T Consensus       139 el~gkTvGIiG-~G~IG~~va~~l~-afgm~v~~~d~~~~~~~~~~~~-------~~~~~~Ld~lL~~sDiv~lh~  205 (324)
T COG0111         139 ELAGKTVGIIG-LGRIGRAVAKRLK-AFGMKVIGYDPYSPRERAGVDG-------VVGVDSLDELLAEADILTLHL  205 (324)
T ss_pred             cccCCEEEEEC-CCHHHHHHHHHHH-hCCCeEEEECCCCchhhhcccc-------ceecccHHHHHhhCCEEEEcC
Confidence            44689999999 7999999999998 7899999999944332211111       1122457789999985 4454

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.98  E-value=0.04  Score=47.46  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |.++|.|+| .|.+|..+++.|. ..|++|++.+|++.+
T Consensus         1 ~~~~IgviG-~G~mG~~~a~~l~-~~g~~v~~~d~~~~~   37 (296)
T PRK11559          1 MTMKVGFIG-LGIMGKPMSKNLL-KAGYSLVVYDRNPEA   37 (296)
T ss_pred             CCceEEEEc-cCHHHHHHHHHHH-HCCCeEEEEcCCHHH
Confidence            346899999 7999999999998 689999999988754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.94  E-value=0.052  Score=47.50  Aligned_cols=59  Identities=15%  Similarity=0.144  Sum_probs=43.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|.+....    .  ..    .-..++.++++.+|.
T Consensus       143 ~l~g~~VgIIG-~G~IG~~vA~~L~-~~G~~V~~~d~~~~~~~----~--~~----~~~~~l~ell~~aDi  201 (330)
T PRK12480        143 PVKNMTVAIIG-TGRIGAATAKIYA-GFGATITAYDAYPNKDL----D--FL----TYKDSVKEAIKDADI  201 (330)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEEeCChhHhh----h--hh----hccCCHHHHHhcCCE
Confidence            44678999999 7999999999998 68999999998764311    0  00    111247788999884

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.88  E-value=0.06  Score=43.52  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +..+|+|+|+|. |.+|+++++.|. +.|++|++.++++..
T Consensus        25 ~l~gk~v~I~G~-G~vG~~~A~~L~-~~G~~Vvv~D~~~~~   63 (200)
T cd01075          25 SLEGKTVAVQGL-GKVGYKLAEHLL-EEGAKLIVADINEEA   63 (200)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEcCCHHH
Confidence            446789999995 899999999998 689999998887654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.87  E-value=0.082  Score=47.35  Aligned_cols=67  Identities=13%  Similarity=-0.010  Sum_probs=49.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHH-HhccCcee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRK-LTLLEDVT   97 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~   97 (303)
                      +.+++|+| .|-+|+.+++.|. +.|++|++++.+... .....+..++.+|.+|.+.++++ ++.++.|+
T Consensus       240 k~HvII~G-~g~lg~~v~~~L~-~~g~~vvVId~d~~~-~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI  307 (393)
T PRK10537        240 KDHFIICG-HSPLAINTYLGLR-QRGQAVTVIVPLGLE-HRLPDDADLIPGDSSDSAVLKKAGAARARAIL  307 (393)
T ss_pred             CCeEEEEC-CChHHHHHHHHHH-HCCCCEEEEECchhh-hhccCCCcEEEeCCCCHHHHHhcCcccCCEEE
Confidence            46899999 6999999999998 678898888865332 22335788999999998877654 34444333

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.83  E-value=0.069  Score=46.48  Aligned_cols=60  Identities=15%  Similarity=0.092  Sum_probs=44.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|+|.|.| .|-||+.+++.|. .-|.+|++.+|.....     ..        ...++.++++.+|. ++|+
T Consensus       145 ~l~gktvgIiG-~G~IG~~vA~~l~-~fgm~V~~~~~~~~~~-----~~--------~~~~l~ell~~sDiv~l~l  205 (317)
T PRK06487        145 ELEGKTLGLLG-HGELGGAVARLAE-AFGMRVLIGQLPGRPA-----RP--------DRLPLDELLPQVDALTLHC  205 (317)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHh-hCCCEEEEECCCCCcc-----cc--------cccCHHHHHHhCCEEEECC
Confidence            45689999999 7999999999997 6889999988753211     11        12258889999994 4444

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.83  E-value=0.069  Score=46.10  Aligned_cols=58  Identities=14%  Similarity=0.104  Sum_probs=43.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ...+|+|.|.| .|.||+.+++.|. .-|++|++.+|+...     .++...      ..+++++++.+|.
T Consensus       119 ~L~gktvgIiG-~G~IG~~vA~~l~-afG~~V~~~~r~~~~-----~~~~~~------~~~l~ell~~aDi  176 (303)
T PRK06436        119 LLYNKSLGILG-YGGIGRRVALLAK-AFGMNIYAYTRSYVN-----DGISSI------YMEPEDIMKKSDF  176 (303)
T ss_pred             CCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEECCCCcc-----cCcccc------cCCHHHHHhhCCE
Confidence            45689999999 8999999999876 679999999987432     122110      1247788888885

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.81  E-value=0.065  Score=46.07  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      -+|.|.|||||.|..|++.|......++..++-+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~   35 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPD   35 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecc
Confidence            3799999999999999999996677786666543

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=94.80  E-value=0.31  Score=40.75  Aligned_cols=93  Identities=18%  Similarity=0.074  Sum_probs=59.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhccC--ceeEEeecc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTLLE--DVTHIFWVT  103 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~~~--~V~~~~~~~  103 (303)
                      |+|||+|||+= |+.|+..|. ..|+ |++..-.+-...   ...+...++.+-+.+.+.+.+.++...  .|+...++ 
T Consensus         1 m~ILvlgGTtE-~r~la~~L~-~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHP-   76 (249)
T PF02571_consen    1 MKILVLGGTTE-GRKLAERLA-EAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHP-   76 (249)
T ss_pred             CEEEEEechHH-HHHHHHHHH-hcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCc-
Confidence            58999998765 999999998 6787 554433222211   122466788888889999999998665  35554221 


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                          ...          ..+.++.++|++.+....+
T Consensus        77 ----fA~----------~is~na~~a~~~~~ipylR   98 (249)
T PF02571_consen   77 ----FAA----------EISQNAIEACRELGIPYLR   98 (249)
T ss_pred             ----hHH----------HHHHHHHHHHhhcCcceEE
Confidence                111          2345688888877544433

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK07574 formate dehydrogenase; Provisional

Probab=94.79  E-value=0.052  Score=48.43  Aligned_cols=66  Identities=17%  Similarity=0.132  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-cCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-QSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|+| .|-||+.+++.|. .-|.+|++.+|....... ...++       .-..+++++++.+|+ ++|+
T Consensus       189 ~L~gktVGIvG-~G~IG~~vA~~l~-~fG~~V~~~dr~~~~~~~~~~~g~-------~~~~~l~ell~~aDvV~l~l  256 (385)
T PRK07574        189 DLEGMTVGIVG-AGRIGLAVLRRLK-PFDVKLHYTDRHRLPEEVEQELGL-------TYHVSFDSLVSVCDVVTIHC  256 (385)
T ss_pred             ecCCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEECCCCCchhhHhhcCc-------eecCCHHHHhhcCCEEEEcC
Confidence            34678999999 7999999999998 689999999987532111 11122       112357788999985 3344

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.75  E-value=0.035  Score=48.16  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ++|.|+| .|.+|..++..|+ ..|++|++.+|++..
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la-~~G~~V~v~d~~~~~   37 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFA-RAGHEVRLWDADPAA   37 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHH-HCCCeeEEEeCCHHH
Confidence            4799999 8999999999999 689999999998753

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.74  E-value=0.042  Score=50.09  Aligned_cols=36  Identities=33%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ++|.|+||+|.+|..++..|. ..|++|++.+|++..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~-~~G~~V~v~~r~~~~   36 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLK-EKGFEVIVTGRDPKK   36 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHH-HCCCEEEEEECChHH
Confidence            379999999999999999998 688999999998754

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.71  E-value=0.085  Score=45.19  Aligned_cols=37  Identities=35%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe-cCC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIA-RKP   63 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~-r~~   63 (303)
                      ..+|+|+|.|.+|.+|+.++..|+ +.|+.|++.. |++
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~-~~g~tVtv~~~rT~  193 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLL-AANATVTIAHSRTR  193 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHH-hCCCEEEEECCCCC
Confidence            468999999999999999999999 6899999984 543

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.71  E-value=0.082  Score=47.00  Aligned_cols=62  Identities=18%  Similarity=0.075  Sum_probs=44.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|.| .|.||+.+++.|. .-|++|++.++....     .+      +.....+++++++.+|+ ++|+
T Consensus       113 ~L~gktvGIIG-~G~IG~~vA~~l~-a~G~~V~~~dp~~~~-----~~------~~~~~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        113 SLHDRTVGIVG-VGNVGRRLQARLE-ALGIKTLLCDPPRAD-----RG------DEGDFRSLDELVQEADILTFHT  175 (378)
T ss_pred             CcCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEECCcccc-----cc------cccccCCHHHHHhhCCEEEEeC
Confidence            34689999999 7999999999998 789999998753221     00      11122357788988884 4455

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=94.63  E-value=0.055  Score=47.66  Aligned_cols=34  Identities=21%  Similarity=0.433  Sum_probs=27.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      ++|.|+|+||++|++|++.|.....++|..+..+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~   34 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS   34 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence            3799999999999999998874455788877443

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=94.62  E-value=0.088  Score=45.71  Aligned_cols=62  Identities=18%  Similarity=0.121  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|+|.|.| .|-||+.+++.+. .-|.+|++.+|.....   ...+.        ..++.++++.+|. ++|+
T Consensus       142 ~L~gktvGIiG-~G~IG~~vA~~~~-~fgm~V~~~d~~~~~~---~~~~~--------~~~l~ell~~sDvv~lh~  204 (311)
T PRK08410        142 EIKGKKWGIIG-LGTIGKRVAKIAQ-AFGAKVVYYSTSGKNK---NEEYE--------RVSLEELLKTSDIISIHA  204 (311)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHh-hcCCEEEEECCCcccc---ccCce--------eecHHHHhhcCCEEEEeC
Confidence            45789999999 8999999999997 6888999998864221   11111        2357889999994 5555

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.62  E-value=0.12  Score=43.87  Aligned_cols=55  Identities=24%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+++|+|.|.++.+|+.++..|+ ..|..|+++.++.                    ..+.+.++.+|.|+-..+
T Consensus       156 l~Gk~vvViGrs~iVGkPla~lL~-~~~atVt~~hs~t--------------------~~l~~~~~~ADIVV~avG  210 (285)
T PRK14189        156 LRGAHAVVIGRSNIVGKPMAMLLL-QAGATVTICHSKT--------------------RDLAAHTRQADIVVAAVG  210 (285)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHH-HCCCEEEEecCCC--------------------CCHHHHhhhCCEEEEcCC
Confidence            367899999999999999999998 6788888754332                    125577888885554433

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.60  E-value=0.047  Score=48.04  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |.++|.|.| +|.+|..++..|. ..|++|++++|++
T Consensus         1 ~~mkI~IiG-~G~mG~~~A~~L~-~~G~~V~~~~r~~   35 (341)
T PRK08229          1 MMARICVLG-AGSIGCYLGGRLA-AAGADVTLIGRAR   35 (341)
T ss_pred             CCceEEEEC-CCHHHHHHHHHHH-hcCCcEEEEecHH
Confidence            446899999 7999999999998 6799999999965

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.59  E-value=0.14  Score=43.75  Aligned_cols=72  Identities=14%  Similarity=0.082  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      .+++|.|+|+.| +|.--++.-. .-|++|+++++...+..  ....+.+.+..-..|++.++++.+..|-++|..
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AK-AMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v  254 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAK-AMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTV  254 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHH-HhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceee
Confidence            578999999988 9988887776 78999999999864432  344567766555558888888887777666664

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.56  E-value=0.041  Score=49.96  Aligned_cols=67  Identities=15%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-c-cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-I-QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-~-~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++|+|+| +|-+|..+++.|. ..|. +|++.+|++.+.. . ..-+.     +..+.+.+.+.+.++|.|+.+
T Consensus       180 ~~~~~vlViG-aG~iG~~~a~~L~-~~G~~~V~v~~r~~~ra~~la~~~g~-----~~~~~~~~~~~l~~aDvVI~a  249 (423)
T PRK00045        180 LSGKKVLVIG-AGEMGELVAKHLA-EKGVRKITVANRTLERAEELAEEFGG-----EAIPLDELPEALAEADIVISS  249 (423)
T ss_pred             ccCCEEEEEC-chHHHHHHHHHHH-HCCCCeEEEEeCCHHHHHHHHHHcCC-----cEeeHHHHHHHhccCCEEEEC
Confidence            3568999999 5999999999998 5787 6999999876532 1 11111     222335566777888866655

>PRK06849 hypothetical protein; Provisional

Probab=94.50  E-value=0.069  Score=47.98  Aligned_cols=37  Identities=24%  Similarity=0.164  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ++|+|||||++..+|..+++.|. +.|++|++++..+.
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~-~~G~~Vi~~d~~~~   39 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFH-NAGHTVILADSLKY   39 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCch
Confidence            35899999999999999999998 68999999998764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.48  E-value=0.14  Score=45.25  Aligned_cols=73  Identities=14%  Similarity=0.048  Sum_probs=47.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEE-EEec-----CCCHHHHHHHHhccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCF-ISCD-----LLNPLDIKRKLTLLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~-~~~D-----~~~~~~l~~~~~~~~   94 (303)
                      |+|.|.| +||+|......|. +.||+|++++.++.+...        -.++++- ++-+     +.-..+.+.+++..|
T Consensus         1 MkI~viG-tGYVGLv~g~~lA-~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLA-ELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence            5799999 8999999999998 789999999988766431        1122211 1111     222234667888888


Q ss_pred             ceeEEeecc
Q 042242           95 DVTHIFWVT  103 (303)
Q Consensus        95 ~V~~~~~~~  103 (303)
                      .+|.+.+++
T Consensus        79 v~fIavgTP   87 (414)
T COG1004          79 VVFIAVGTP   87 (414)
T ss_pred             EEEEEcCCC
Confidence            655554443

>PLN00203 glutamyl-tRNA reductase

Probab=94.47  E-value=0.045  Score=50.78  Aligned_cols=69  Identities=19%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc---cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI---QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++|+|+|+ |-+|..+++.|. ..|+ +|+++.|+..+...   ..++..+..   ...+++.+.+.++|.||.+
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~-~~G~~~V~V~nRs~era~~La~~~~g~~i~~---~~~~dl~~al~~aDVVIsA  336 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLV-SKGCTKMVVVNRSEERVAALREEFPDVEIIY---KPLDEMLACAAEADVVFTS  336 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHhCCCceEe---ecHhhHHHHHhcCCEEEEc
Confidence            44689999995 999999999998 5776 59999998766431   112222222   2233456778888855544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=94.44  E-value=0.11  Score=46.42  Aligned_cols=62  Identities=23%  Similarity=0.229  Sum_probs=44.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|.| .|.||+.+++.|. .-|++|++.++.....   ...        ....++.++++.+|. ++|+
T Consensus       113 ~l~gktvGIIG-~G~IG~~va~~l~-a~G~~V~~~Dp~~~~~---~~~--------~~~~~l~ell~~aDiV~lh~  175 (381)
T PRK00257        113 DLAERTYGVVG-AGHVGGRLVRVLR-GLGWKVLVCDPPRQEA---EGD--------GDFVSLERILEECDVISLHT  175 (381)
T ss_pred             CcCcCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEECCccccc---ccC--------ccccCHHHHHhhCCEEEEeC
Confidence            34678999999 7999999999998 6899999988643211   000        112347788888884 5555

>PRK06932 glycerate dehydrogenase; Provisional

Probab=94.44  E-value=0.096  Score=45.52  Aligned_cols=61  Identities=18%  Similarity=0.122  Sum_probs=44.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|+|.|.| .|-||+.+++.|. .-|.+|++.+|.....      .     + ....++.++++.+|. ++|+
T Consensus       144 ~l~gktvgIiG-~G~IG~~va~~l~-~fg~~V~~~~~~~~~~------~-----~-~~~~~l~ell~~sDiv~l~~  205 (314)
T PRK06932        144 DVRGSTLGVFG-KGCLGTEVGRLAQ-ALGMKVLYAEHKGASV------C-----R-EGYTPFEEVLKQADIVTLHC  205 (314)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHh-cCCCEEEEECCCcccc------c-----c-cccCCHHHHHHhCCEEEEcC
Confidence            45689999999 7999999999997 6889999887653210      0     0 012358889999994 4454

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.44  E-value=0.097  Score=45.19  Aligned_cols=64  Identities=13%  Similarity=0.140  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      ...+|+|.|+| -|-||+.+++.|. ..|++|++..|...... ....++++        .++.++++.+|.|+.
T Consensus        13 ~LkgKtVGIIG-~GsIG~amA~nL~-d~G~~ViV~~r~~~s~~~A~~~G~~v--------~sl~Eaak~ADVV~l   77 (335)
T PRK13403         13 LLQGKTVAVIG-YGSQGHAQAQNLR-DSGVEVVVGVRPGKSFEVAKADGFEV--------MSVSEAVRTAQVVQM   77 (335)
T ss_pred             hhCcCEEEEEe-EcHHHHHHHHHHH-HCcCEEEEEECcchhhHHHHHcCCEE--------CCHHHHHhcCCEEEE
Confidence            44679999999 8999999999998 68999998877533211 11223432        147789999985333

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.38  E-value=0.16  Score=44.64  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCe---EEEEecC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWK---VYGIARK   62 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~---V~~~~r~   62 (303)
                      +.+|.|.||||++|+.+++.|.....++   +..+...
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~   42 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK   42 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc
Confidence            4689999999999999999998457777   5555543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.35  E-value=0.05  Score=43.16  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=29.0

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +|.|.|+ |.+|+.++..++ ..|++|++.++++..
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a-~~G~~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFA-RAGYEVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHH-HTTSEEEEE-SSHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHH-hCCCcEEEEECChHH
Confidence            6899995 999999999999 689999999998764

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.33  E-value=0.057  Score=48.90  Aligned_cols=38  Identities=16%  Similarity=0.258  Sum_probs=33.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      .++|.|+| .|++|..++..|. +.||+|++.++++.+..
T Consensus         3 ~~kI~VIG-lG~~G~~~A~~La-~~G~~V~~~D~~~~~v~   40 (415)
T PRK11064          3 FETISVIG-LGYIGLPTAAAFA-SRQKQVIGVDINQHAVD   40 (415)
T ss_pred             ccEEEEEC-cchhhHHHHHHHH-hCCCEEEEEeCCHHHHH
Confidence            36899999 7999999999998 68999999999876543

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=94.29  E-value=0.4  Score=44.90  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc------------ccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA------------IQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~------------~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      ...+|+|+| .|.+|++++..|+ ..|.. +++++-+.....            .-.+++.+-..|....+++.+++++.
T Consensus       128 R~akVlVlG-~Gg~~s~lv~sL~-~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~  205 (637)
T TIGR03693       128 RNAKILAAG-SGDFLTKLVRSLI-DSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPA  205 (637)
T ss_pred             hcccEEEEe-cCchHHHHHHHHH-hcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCC
Confidence            456999999 7889999999999 57766 877754433210            11346666667778888999999999


Q ss_pred             CceeEEe
Q 042242           94 EDVTHIF  100 (303)
Q Consensus        94 ~~V~~~~  100 (303)
                      |.|++++
T Consensus       206 DiVi~vs  212 (637)
T TIGR03693       206 DWVLYVS  212 (637)
T ss_pred             cEEEEEC
Confidence            9777774

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.26  E-value=0.05  Score=46.09  Aligned_cols=37  Identities=14%  Similarity=0.159  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC---CeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN---WKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~   65 (303)
                      |+++|.|+| .|.+|..+++.|. +.|   ++|++.+|++.+
T Consensus         1 ~mm~I~iIG-~G~mG~~la~~l~-~~g~~~~~v~v~~r~~~~   40 (267)
T PRK11880          1 MMKKIGFIG-GGNMASAIIGGLL-ASGVPAKDIIVSDPSPEK   40 (267)
T ss_pred             CCCEEEEEe-chHHHHHHHHHHH-hCCCCcceEEEEcCCHHH
Confidence            346899999 6999999999998 566   689999998654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.26  E-value=0.088  Score=45.80  Aligned_cols=36  Identities=25%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      +.++|+|.| +|-||..++..|. +.|++|+++.|++.
T Consensus         4 ~~m~I~IiG-~GaiG~~lA~~L~-~~g~~V~~~~r~~~   39 (313)
T PRK06249          4 ETPRIGIIG-TGAIGGFYGAMLA-RAGFDVHFLLRSDY   39 (313)
T ss_pred             cCcEEEEEC-CCHHHHHHHHHHH-HCCCeEEEEEeCCH
Confidence            346899998 7999999999998 68999999999763

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.26  E-value=0.095  Score=47.33  Aligned_cols=63  Identities=14%  Similarity=0.113  Sum_probs=45.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|+|.|.| .|-||+.+++.+. .-|.+|++.+|.+...   ..++.       ...+++++++.+|. ++|+
T Consensus       148 ~L~gktvGIiG-~G~IG~~vA~~~~-~fGm~V~~~d~~~~~~---~~~~~-------~~~~l~ell~~sDiVslh~  211 (409)
T PRK11790        148 EVRGKTLGIVG-YGHIGTQLSVLAE-SLGMRVYFYDIEDKLP---LGNAR-------QVGSLEELLAQSDVVSLHV  211 (409)
T ss_pred             cCCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEECCCcccc---cCCce-------ecCCHHHHHhhCCEEEEcC
Confidence            45789999999 8999999999998 7899999999764211   01111       12257789999984 4554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.20  E-value=0.048  Score=47.61  Aligned_cols=35  Identities=31%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ++|.|+| .|.+|+.++..|. ..|++|++.+|++..
T Consensus         2 mkI~iiG-~G~mG~~~a~~L~-~~g~~V~~~~r~~~~   36 (325)
T PRK00094          2 MKIAVLG-AGSWGTALAIVLA-RNGHDVTLWARDPEQ   36 (325)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEEEEECCHHH
Confidence            4799999 6999999999998 689999999997654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.18  E-value=0.053  Score=46.39  Aligned_cols=69  Identities=13%  Similarity=0.023  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCC----eEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSS----YCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~----~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+++|+|+| +|..|+.++..|. ..|. +|+++.|+..+.......    ..+.  .+...+.+...+..+|.||++
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~-~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~--~~~~~~~~~~~~~~~DiVIna  197 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALA-SLGVTDITVINRNPDKLSRLVDLGVQVGVIT--RLEGDSGGLAIEKAAEVLVST  197 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHhhhcCcce--eccchhhhhhcccCCCEEEEC
Confidence            467999999 5999999999998 5776 499999987654311111    1111  122223344555667767777

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.16  E-value=0.16  Score=43.20  Aligned_cols=33  Identities=30%  Similarity=0.338  Sum_probs=30.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGI   59 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~   59 (303)
                      ..+|+|.|.|.+|.+|+.++..|+ +.|+.|++.
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~-~~gatVtv~  188 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLL-DKNATVTLT  188 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHH-HCCCEEEEE
Confidence            368999999999999999999999 689999876

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.14  E-value=0.55  Score=38.77  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~   63 (303)
                      +.++|+|.| .|.+|+++++.|. ..|.. +++++.+.
T Consensus        20 ~~~~VlivG-~GglGs~va~~La-~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVG-AGGLGSPAAEYLA-AAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCE
Confidence            567999999 7999999999998 56765 88887653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=94.14  E-value=0.092  Score=45.34  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=31.2

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +|.|+| .|.+|..+++.|. +.|++|++.+|++.+.
T Consensus         2 ~Ig~IG-lG~mG~~la~~L~-~~g~~V~~~dr~~~~~   36 (298)
T TIGR00872         2 QLGLIG-LGRMGANIVRRLA-KRGHDCVGYDHDQDAV   36 (298)
T ss_pred             EEEEEc-chHHHHHHHHHHH-HCCCEEEEEECCHHHH
Confidence            799999 7999999999998 6899999999987654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.13  E-value=0.18  Score=42.86  Aligned_cols=55  Identities=16%  Similarity=0.200  Sum_probs=42.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+|+|+|+|.+..+|+.++..|+ ..+..|+...++..                    .+.+.++.+|.|+...+
T Consensus       157 l~Gk~vvViGrs~iVG~Pla~lL~-~~~atVtv~hs~T~--------------------~l~~~~~~ADIvi~avG  211 (285)
T PRK10792        157 TYGLNAVVVGASNIVGRPMSLELL-LAGCTVTVCHRFTK--------------------NLRHHVRNADLLVVAVG  211 (285)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHH-HCCCeEEEEECCCC--------------------CHHHHHhhCCEEEEcCC
Confidence            357999999999999999999998 67888888765421                    25677788886555543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.13  E-value=0.09  Score=40.59  Aligned_cols=62  Identities=21%  Similarity=0.227  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+|+++|+| -|.+|+-+++.|. ..|.+|++...+|.... ....++++.        .++++++..| ||..
T Consensus        22 ~Gk~vvV~G-YG~vG~g~A~~lr-~~Ga~V~V~e~DPi~alqA~~dGf~v~--------~~~~a~~~ad-i~vt   84 (162)
T PF00670_consen   22 AGKRVVVIG-YGKVGKGIARALR-GLGARVTVTEIDPIRALQAAMDGFEVM--------TLEEALRDAD-IFVT   84 (162)
T ss_dssp             TTSEEEEE---SHHHHHHHHHHH-HTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHHTTT-S-EEEE
T ss_pred             CCCEEEEeC-CCcccHHHHHHHh-hCCCEEEEEECChHHHHHhhhcCcEec--------CHHHHHhhCC-EEEE
Confidence            478999999 8999999999998 68999999999886542 122455543        2567787777 4443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.12  E-value=0.11  Score=48.51  Aligned_cols=66  Identities=15%  Similarity=0.073  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|+|.|.| .|.||+.+++.|. .-|++|++.+|..........++..       .++++++++.+|. ++|+
T Consensus       135 ~l~gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~~d~~~~~~~~~~~g~~~-------~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       135 ELYGKTLGVIG-LGRIGSIVAKRAK-AFGMKVLAYDPYISPERAEQLGVEL-------VDDLDELLARADFITVHT  201 (525)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEECCCCChhHHHhcCCEE-------cCCHHHHHhhCCEEEEcc
Confidence            45679999999 7999999999998 6899999999853321111112221       1247788888884 4444

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.08  E-value=0.07  Score=48.38  Aligned_cols=67  Identities=18%  Similarity=0.157  Sum_probs=46.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-c-cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-I-QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-~-~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++|+|+|+ |-+|..+++.|. ..| .+|++++|+..+.. . ..-+...+     +.+++.+.+.++|.|+.+
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~-~~G~~~V~v~~rs~~ra~~la~~~g~~~i-----~~~~l~~~l~~aDvVi~a  247 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLL-RKGVGKILIANRTYERAEDLAKELGGEAV-----KFEDLEEYLAEADIVISS  247 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHcCCeEe-----eHHHHHHHHhhCCEEEEC
Confidence            35689999995 999999999998 567 67999999876532 1 11111222     234567788888865555

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=94.08  E-value=0.47  Score=36.44  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..+|+|-|+-|-+|+++++.+. .++|-|.-++-.+..
T Consensus         3 agrVivYGGkGALGSacv~~Fk-annywV~siDl~eNe   39 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFK-ANNYWVLSIDLSENE   39 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHH-hcCeEEEEEeecccc
Confidence            4689999999999999999998 789988888876543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.07  E-value=0.13  Score=46.40  Aligned_cols=62  Identities=23%  Similarity=0.217  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      .+++|+|+| .|.||+.+++.|. ..|.+|+++++++.+... ...++++.     +   +.++++++|.|+.
T Consensus       211 ~Gk~VlViG-~G~IG~~vA~~lr-~~Ga~ViV~d~dp~ra~~A~~~G~~v~-----~---l~eal~~aDVVI~  273 (425)
T PRK05476        211 AGKVVVVAG-YGDVGKGCAQRLR-GLGARVIVTEVDPICALQAAMDGFRVM-----T---MEEAAELGDIFVT  273 (425)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEEcCCchhhHHHHhcCCEec-----C---HHHHHhCCCEEEE
Confidence            578999999 6999999999998 678899999988765321 11233321     2   4566777875543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.07  E-value=1.1  Score=36.06  Aligned_cols=36  Identities=19%  Similarity=0.337  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~   64 (303)
                      +..+|+|.|++| +|+++++.|. ..|.. +++++.+.-
T Consensus        18 ~~s~VlviG~gg-lGsevak~L~-~~GVg~i~lvD~d~v   54 (198)
T cd01485          18 RSAKVLIIGAGA-LGAEIAKNLV-LAGIDSITIVDHRLV   54 (198)
T ss_pred             hhCcEEEECCCH-HHHHHHHHHH-HcCCCEEEEEECCcC
Confidence            467999999655 9999999999 56766 999987643

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.07  E-value=0.15  Score=46.47  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|+|+| .|.||+.+++.|. ..|.+|++..+++.... ....++++.        .+.++++.+|.|+
T Consensus       251 ~LaGKtVgVIG-~G~IGr~vA~rL~-a~Ga~ViV~e~dp~~a~~A~~~G~~~~--------~leell~~ADIVI  314 (476)
T PTZ00075        251 MIAGKTVVVCG-YGDVGKGCAQALR-GFGARVVVTEIDPICALQAAMEGYQVV--------TLEDVVETADIFV  314 (476)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCchhHHHHHhcCceec--------cHHHHHhcCCEEE
Confidence            44689999999 7899999999998 68899999988765431 111233322        2556788888543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.06  E-value=0.14  Score=47.92  Aligned_cols=65  Identities=17%  Similarity=0.115  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|+|.|.| .|.||+.+++.|. .-|.+|++.+|..........++...        ++.++++.+|. ++|+
T Consensus       137 ~l~gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~~d~~~~~~~~~~~g~~~~--------~l~ell~~aDiV~l~l  202 (526)
T PRK13581        137 ELYGKTLGIIG-LGRIGSEVAKRAK-AFGMKVIAYDPYISPERAAQLGVELV--------SLDELLARADFITLHT  202 (526)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEECCCCChhHHHhcCCEEE--------cHHHHHhhCCEEEEcc
Confidence            34689999999 7999999999998 78999999998643222111233221        36678888884 4444

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=94.00  E-value=0.037  Score=47.58  Aligned_cols=35  Identities=20%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +|.|+| .|.+|..+++.|+ ..|++|++.+|++.+.
T Consensus         1 ~IgvIG-~G~mG~~iA~~l~-~~G~~V~~~dr~~~~~   35 (291)
T TIGR01505         1 KVGFIG-LGIMGSPMSINLA-KAGYQLHVTTIGPEVA   35 (291)
T ss_pred             CEEEEE-ecHHHHHHHHHHH-HCCCeEEEEcCCHHHH
Confidence            478898 7999999999999 6899999999987553

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.95  E-value=0.11  Score=46.42  Aligned_cols=69  Identities=14%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++|||+| .|-+|.-+++.|. ..|. +|++..|+..+.......+.   ++....+.+...+..+|+||-.
T Consensus       176 L~~~~vlvIG-AGem~~lva~~L~-~~g~~~i~IaNRT~erA~~La~~~~---~~~~~l~el~~~l~~~DvViss  245 (414)
T COG0373         176 LKDKKVLVIG-AGEMGELVAKHLA-EKGVKKITIANRTLERAEELAKKLG---AEAVALEELLEALAEADVVISS  245 (414)
T ss_pred             cccCeEEEEc-ccHHHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHhC---CeeecHHHHHHhhhhCCEEEEe
Confidence            4678999999 5999999999999 5674 58888898777542222222   5566667788899999966655

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=93.94  E-value=0.28  Score=40.84  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc---------ccCCCeE------------EEEecCCCHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA---------IQSSSYC------------FISCDLLNPLD   85 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~---------~~~~~~~------------~~~~D~~~~~~   85 (303)
                      +.+|.|.|++|-+|+.+++.+....+++ +-+++|.++...         ....++.            -+..|.+.|+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~   81 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPEA   81 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCchh
Confidence            4689999999999999999998667788 667777765321         0011111            24578888887


Q ss_pred             HHHHHhcc
Q 042242           86 IKRKLTLL   93 (303)
Q Consensus        86 l~~~~~~~   93 (303)
                      ..+.++-+
T Consensus        82 ~~~~l~~~   89 (266)
T COG0289          82 TLENLEFA   89 (266)
T ss_pred             hHHHHHHH
Confidence            66655543

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.89  E-value=0.24  Score=42.16  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=41.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ..+|+|+|.|.|..+|+.++..|+ ..+..|+.+..+.                    ..+.+.++.+|.|+-..
T Consensus       156 l~Gk~vvViGrS~iVG~Pla~lL~-~~~atVt~chs~t--------------------~~l~~~~~~ADIvI~Av  209 (284)
T PRK14190        156 ISGKHVVVVGRSNIVGKPVGQLLL-NENATVTYCHSKT--------------------KNLAELTKQADILIVAV  209 (284)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHH-HCCCEEEEEeCCc--------------------hhHHHHHHhCCEEEEec
Confidence            368999999999999999999998 6777888754321                    23667888888555544

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.87  E-value=0.22  Score=42.34  Aligned_cols=55  Identities=22%  Similarity=0.176  Sum_probs=40.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+|+|+|.|.|..+|+.++..|+ +.+..|+...++..                    .+.+..+.+|.|+-.++
T Consensus       153 l~Gk~vvViGrS~iVGkPla~lL~-~~~aTVtichs~T~--------------------~l~~~~~~ADIvIsAvG  207 (287)
T PRK14173        153 LAGKEVVVVGRSNIVGKPLAALLL-REDATVTLAHSKTQ--------------------DLPAVTRRADVLVVAVG  207 (287)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHH-HCCCEEEEeCCCCC--------------------CHHHHHhhCCEEEEecC
Confidence            367999999999999999999998 67778886654431                    15567777885554433

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.86  E-value=0.2  Score=38.72  Aligned_cols=34  Identities=24%  Similarity=0.171  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR   61 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   61 (303)
                      ..+++|+|.| .|-+|...++.|+ +.|++|++++.
T Consensus        11 l~~~~vlVvG-GG~va~rka~~Ll-~~ga~V~VIsp   44 (157)
T PRK06719         11 LHNKVVVIIG-GGKIAYRKASGLK-DTGAFVTVVSP   44 (157)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEEcC
Confidence            3578999999 6999999999999 68999998854

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.84  E-value=0.63  Score=41.24  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKP   63 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~   63 (303)
                      .+.++|+|.| .|.+|+++++.|. ..|.. +++++.+.
T Consensus        26 L~~~~VlivG-~GGlGs~~a~~La-~~Gvg~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIG-AGGLGSPALLYLA-GAGVGHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCE
Confidence            3567999999 5999999999998 67776 99998764

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=93.83  E-value=0.22  Score=43.39  Aligned_cols=65  Identities=23%  Similarity=0.237  Sum_probs=46.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+|++.|+| .|-||+.+++.+. .-|.+|...+|++.+......+..++     +   +.++++.+|. ++|+
T Consensus       143 ~l~gktvGIiG-~GrIG~avA~r~~-~Fgm~v~y~~~~~~~~~~~~~~~~y~-----~---l~ell~~sDii~l~~  208 (324)
T COG1052         143 DLRGKTLGIIG-LGRIGQAVARRLK-GFGMKVLYYDRSPNPEAEKELGARYV-----D---LDELLAESDIISLHC  208 (324)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHh-cCCCEEEEECCCCChHHHhhcCceec-----c---HHHHHHhCCEEEEeC
Confidence            44689999999 8999999999998 67888999999875211111122222     2   6688999984 4444

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.83  E-value=0.034  Score=47.59  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   66 (303)
                      ..++|+|+| +|..|++++..|. ..|. +|++++|+..+.
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~-~~G~~~I~I~nR~~~ka  164 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALL-TLGVERLTIFDVDPARA  164 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHH-HcCCCEEEEECCCHHHH
Confidence            457999999 5889999999998 5777 599999987654

>PLN03139 formate dehydrogenase; Provisional

Probab=93.83  E-value=0.1  Score=46.57  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ...+|+|.|+| .|-||+.+++.|. .-|.+|++.+|....... ...++.       -.++++++++.+|+
T Consensus       196 ~L~gktVGIVG-~G~IG~~vA~~L~-afG~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~sDv  258 (386)
T PLN03139        196 DLEGKTVGTVG-AGRIGRLLLQRLK-PFNCNLLYHDRLKMDPELEKETGAK-------FEEDLDAMLPKCDV  258 (386)
T ss_pred             CCCCCEEEEEe-ecHHHHHHHHHHH-HCCCEEEEECCCCcchhhHhhcCce-------ecCCHHHHHhhCCE
Confidence            45689999999 7999999999998 689999998886432111 111111       12357788888885

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.78  E-value=0.091  Score=45.97  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +.+|||+||+|.+|+..++.+. ..|+.+++++.++.+
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk-~~G~~~v~~~~s~~k  179 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAK-ALGATVVAVVSSSEK  179 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHH-HcCCcEEEEecCHHH
Confidence            6799999999999999999887 677676666655443

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.78  E-value=0.4  Score=38.81  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   63 (303)
                      ..++|+|.| .|.+|+.+++.|. ..|. ++++++++.
T Consensus        20 ~~~~VlviG-~GglGs~ia~~La-~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIG-AGGLGSPAALYLA-GAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEEC-CCHHHHHHHHHHH-HcCCCeEEEecCCE
Confidence            567999999 7999999999998 5776 599999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=93.77  E-value=0.12  Score=45.36  Aligned_cols=63  Identities=19%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|.+..|.+|++.+|......  ...     +.  -..++.++++.+|.|+
T Consensus       143 ~l~g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~-----~~--~~~~l~ell~~aDvIv  205 (332)
T PRK08605        143 SIKDLKVAVIG-TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--ATY-----VD--YKDTIEEAVEGADIVT  205 (332)
T ss_pred             eeCCCEEEEEC-CCHHHHHHHHHHHhcCCCEEEEECCCccHhH--Hhh-----cc--ccCCHHHHHHhCCEEE
Confidence            44678999999 7999999999995246888998887654321  011     11  1124678888888533

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=93.68  E-value=0.15  Score=44.49  Aligned_cols=64  Identities=14%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++|.|+| .|.+|.++++.|. ..|++|++..|+..+..  ....++..     .   ++.++++.+|.|+.+
T Consensus        15 L~gktIgIIG-~GsmG~AlA~~L~-~sG~~Vvv~~r~~~~s~~~A~~~G~~~-----~---s~~eaa~~ADVVvLa   80 (330)
T PRK05479         15 IKGKKVAIIG-YGSQGHAHALNLR-DSGVDVVVGLREGSKSWKKAEADGFEV-----L---TVAEAAKWADVIMIL   80 (330)
T ss_pred             hCCCEEEEEe-eHHHHHHHHHHHH-HCCCEEEEEECCchhhHHHHHHCCCee-----C---CHHHHHhcCCEEEEc
Confidence            4568999999 7999999999998 68999988777654432  11223322     1   355678888844433

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.63  E-value=0.26  Score=41.74  Aligned_cols=37  Identities=27%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      +..+|+|+|.|.+..+|+.++..|+ ..+..|+...++
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~-~~~AtVt~chs~  191 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLLL-NENATVTICHSK  191 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHH-HCCCEEEEeCCC
Confidence            3468999999999999999999998 677778776543

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.60  E-value=0.18  Score=46.33  Aligned_cols=36  Identities=14%  Similarity=0.085  Sum_probs=31.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcC--CCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTA--NWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~--g~~V~~~~r~~~~~   66 (303)
                      ++|.|.| .|++|..++..|. ..  |++|++++.++.+.
T Consensus         2 m~I~ViG-~GyvGl~~A~~lA-~~g~g~~V~gvD~~~~~v   39 (473)
T PLN02353          2 VKICCIG-AGYVGGPTMAVIA-LKCPDIEVVVVDISVPRI   39 (473)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hcCCCCeEEEEECCHHHH
Confidence            5799998 8999999999998 44  68899999887664

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=93.59  E-value=0.15  Score=44.59  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhh--cCCCeEEEEecC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIS--TANWKVYGIARK   62 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~--~~g~~V~~~~r~   62 (303)
                      +..+|.|.||||++|..+++.|..  ....++..++.+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~   40 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE   40 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence            356999999999999999999983  245567766654

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.58  E-value=0.26  Score=41.86  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      ..+|+|+|.|.+..+|+.++..|+ +++..|+.+.++
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~-~~~ATVt~chs~  191 (282)
T PRK14180        156 TEGAYAVVVGASNVVGKPVSQLLL-NAKATVTTCHRF  191 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHH-HCCCEEEEEcCC
Confidence            368999999999999999999998 677788776544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.55  E-value=0.098  Score=45.10  Aligned_cols=36  Identities=17%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.|+| .|.+|..+++.|+ +.|++|++.+|++.+.
T Consensus         2 ~~Ig~IG-lG~mG~~mA~~l~-~~G~~V~v~d~~~~~~   37 (296)
T PRK15461          2 AAIAFIG-LGQMGSPMASNLL-KQGHQLQVFDVNPQAV   37 (296)
T ss_pred             CeEEEEe-eCHHHHHHHHHHH-HCCCeEEEEcCCHHHH
Confidence            4799999 8999999999999 6899999999987654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.48  E-value=0.29  Score=41.67  Aligned_cols=55  Identities=24%  Similarity=0.144  Sum_probs=40.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+++|+|+|.+..+|+.++..|+ ..+..|+....+..                    .+.+..+.+|.|+...+
T Consensus       162 l~Gk~vvViGrs~iVGkPla~lL~-~~~atVtv~hs~T~--------------------~l~~~~~~ADIvv~AvG  216 (287)
T PRK14176        162 IEGKNAVIVGHSNVVGKPMAAMLL-NRNATVSVCHVFTD--------------------DLKKYTLDADILVVATG  216 (287)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHH-HCCCEEEEEeccCC--------------------CHHHHHhhCCEEEEccC
Confidence            357899999999999999999998 67878877664321                    25567777775555433

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.47  E-value=0.29  Score=41.61  Aligned_cols=54  Identities=22%  Similarity=0.095  Sum_probs=40.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ..+|+|+|.|.+..+|+.++..|+ ..|..|+++..+.                    ..+.+.++.+|.|+-..
T Consensus       155 l~Gk~vvVvGrs~~VG~Pla~lL~-~~gAtVtv~hs~t--------------------~~l~~~~~~ADIvV~Av  208 (285)
T PRK14191        155 IKGKDVVIIGASNIVGKPLAMLML-NAGASVSVCHILT--------------------KDLSFYTQNADIVCVGV  208 (285)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHH-HCCCEEEEEeCCc--------------------HHHHHHHHhCCEEEEec
Confidence            357999999999999999999998 6788887753221                    23567888888554443

>PLN02494 adenosylhomocysteinase

Probab=93.47  E-value=0.21  Score=45.48  Aligned_cols=62  Identities=24%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      .+++|+|+| .|.||+.+++.+. ..|.+|+++.+++.+.. ....++.+.        .+.++++.+|.|+.
T Consensus       253 aGKtVvViG-yG~IGr~vA~~ak-a~Ga~VIV~e~dp~r~~eA~~~G~~vv--------~leEal~~ADVVI~  315 (477)
T PLN02494        253 AGKVAVICG-YGDVGKGCAAAMK-AAGARVIVTEIDPICALQALMEGYQVL--------TLEDVVSEADIFVT  315 (477)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCchhhHHHHhcCCeec--------cHHHHHhhCCEEEE
Confidence            578999999 7999999999998 67899999988875422 112334332        24567777775443

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=93.47  E-value=0.1  Score=42.39  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccccc----CCCeE--EEEecCCCHHHHHHHHhccCceeEE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQ----SSSYC--FISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~~~~~--~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .++..++|++||+|..+++.+. ..||+|.-+.|+....+..    ..+++  ....+.-|+.+...+++.+..+.|-
T Consensus         2 i~k~~vfgg~gflg~~ic~~a~-~sgy~vvsvsrsgas~~snkid~~~dve~e~tlvlggnpfsgs~vlk~A~~vv~s   78 (283)
T KOG4288|consen    2 IPKLIVFGGNGFLGKRICQEAV-TSGYQVVSVSRSGASPHSNKIDDKQDVEVEWTLVLGGNPFSGSEVLKNATNVVHS   78 (283)
T ss_pred             CccceeecccccchhhhhHHHH-hcCceEEEeccccCCCcCCCCcchhhhhHHHHhhhcCCCcchHHHHHHHHhhcee
Confidence            4578899999999999999999 5799999999987653311    11122  1223334444555566555444444

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=93.45  E-value=0.054  Score=49.96  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..+++++|+| +|.+|+.++..|. ..|++|++.+|+..+
T Consensus       330 ~~~k~vlIiG-aGgiG~aia~~L~-~~G~~V~i~~R~~~~  367 (477)
T PRK09310        330 LNNQHVAIVG-AGGAAKAIATTLA-RAGAELLIFNRTKAH  367 (477)
T ss_pred             cCCCEEEEEc-CcHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            3467999999 5899999999999 688899998887654

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.45  E-value=0.3  Score=41.50  Aligned_cols=36  Identities=28%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      ..+|+|+|.|.+..+|+.++..|+ ..+..|+....+
T Consensus       157 l~Gk~vvViGrS~iVGkPla~lL~-~~~atVt~chs~  192 (284)
T PRK14177        157 VTGKNAVVVGRSPILGKPMAMLLT-EMNATVTLCHSK  192 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHH-HCCCEEEEeCCC
Confidence            467999999999999999999998 677778776543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.45  E-value=0.11  Score=44.11  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..++++|+|+ |.+|+.++..|. ..|++|++++|++.+
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~-~~g~~v~v~~R~~~~  152 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLL-KADCNVIIANRTVSK  152 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            3579999996 899999999998 578899999988654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.39  E-value=0.29  Score=41.86  Aligned_cols=56  Identities=27%  Similarity=0.153  Sum_probs=40.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      +..+|+|+|.|.|..+|+.++..|+ .++..|+.+..+..                    .+.+..+.+|.|+-.++
T Consensus       155 ~l~Gk~vvVIGrS~iVGkPla~lL~-~~~atVtv~hs~T~--------------------~l~~~~~~ADIvIsAvG  210 (297)
T PRK14186        155 DIAGKKAVVVGRSILVGKPLALMLL-AANATVTIAHSRTQ--------------------DLASITREADILVAAAG  210 (297)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHH-HCCCEEEEeCCCCC--------------------CHHHHHhhCCEEEEccC
Confidence            3467999999999999999999998 67778877643321                    25567777885544433

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.38  E-value=0.3  Score=41.48  Aligned_cols=55  Identities=20%  Similarity=0.180  Sum_probs=40.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+|+|+|.|.+..+|+.++..|+ +.+..|+....+..                    .+.+.++.+|.|+-.++
T Consensus       155 l~Gk~vvVvGrS~iVGkPla~lL~-~~~atVtichs~T~--------------------~l~~~~~~ADIvI~AvG  209 (284)
T PRK14170        155 IEGKRAVVIGRSNIVGKPVAQLLL-NENATVTIAHSRTK--------------------DLPQVAKEADILVVATG  209 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHH-HCCCEEEEeCCCCC--------------------CHHHHHhhCCEEEEecC
Confidence            468999999999999999999998 67778876543321                    15567777875544433

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.30  E-value=0.23  Score=44.76  Aligned_cols=63  Identities=22%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+++|+|+| .|.||..+++.+. ..|.+|+++++++.+.. ....++.++     +   +.+.++++|.|+.+
T Consensus       201 ~GktVvViG-~G~IG~~va~~ak-~~Ga~ViV~d~d~~R~~~A~~~G~~~~-----~---~~e~v~~aDVVI~a  264 (413)
T cd00401         201 AGKVAVVAG-YGDVGKGCAQSLR-GQGARVIVTEVDPICALQAAMEGYEVM-----T---MEEAVKEGDIFVTT  264 (413)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECChhhHHHHHhcCCEEc-----c---HHHHHcCCCEEEEC
Confidence            578999999 6999999999998 67889999988876532 122344332     1   23566777755543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=93.29  E-value=0.39  Score=40.95  Aligned_cols=64  Identities=17%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-cCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-QSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      ...||+++| +|=+|+.++-.+. .-|.+|++++|=...... -..+  -..+|..|.+.++.+++..+
T Consensus        11 ~a~kvmLLG-SGELGKEvaIe~Q-RLG~eViAVDrY~~APAmqVAhr--s~Vi~MlD~~al~avv~rek   75 (394)
T COG0027          11 QATKVMLLG-SGELGKEVAIEAQ-RLGVEVIAVDRYANAPAMQVAHR--SYVIDMLDGDALRAVVEREK   75 (394)
T ss_pred             CCeEEEEec-CCccchHHHHHHH-hcCCEEEEecCcCCChhhhhhhh--eeeeeccCHHHHHHHHHhhC
Confidence            346899999 8999999999997 789999999996544321 1111  23479999999998887654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.28  E-value=0.097  Score=44.93  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.|+| .|.+|..++..|+ ..|++|++.++++...
T Consensus         2 ~~V~VIG-~G~mG~~iA~~la-~~G~~V~~~d~~~~~~   37 (288)
T PRK09260          2 EKLVVVG-AGVMGRGIAYVFA-VSGFQTTLVDIKQEQL   37 (288)
T ss_pred             cEEEEEC-ccHHHHHHHHHHH-hCCCcEEEEeCCHHHH
Confidence            5899999 5999999999998 6899999999987653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.28  E-value=0.18  Score=40.82  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      ..+++|+|+|| |-+|...++.|+ +.|++|+++++..
T Consensus         8 l~~k~vLVIGg-G~va~~ka~~Ll-~~ga~V~VIs~~~   43 (202)
T PRK06718          8 LSNKRVVIVGG-GKVAGRRAITLL-KYGAHIVVISPEL   43 (202)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHH-HCCCeEEEEcCCC
Confidence            45789999994 999999999999 6788999998754

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=93.27  E-value=0.2  Score=44.19  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=22.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWK   55 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~   55 (303)
                      ++|.|.||||.+|+.+++.|..++.+.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp   27 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFD   27 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCc
Confidence            479999999999999999998445654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.23  E-value=0.24  Score=44.53  Aligned_cols=38  Identities=26%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..+++|+|+| .|.||+.+++.+. ..|.+|+++++++.+
T Consensus       193 l~Gk~VvViG-~G~IG~~vA~~ak-~~Ga~ViV~d~dp~r  230 (406)
T TIGR00936       193 IAGKTVVVAG-YGWCGKGIAMRAR-GMGARVIVTEVDPIR  230 (406)
T ss_pred             CCcCEEEEEC-CCHHHHHHHHHHh-hCcCEEEEEeCChhh
Confidence            4578999999 7999999999998 688999999988755

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.23  E-value=0.33  Score=41.22  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=29.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR   61 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   61 (303)
                      ..+|+|+|.|.|..+|+.++..|+ +.+..|+....
T Consensus       154 l~Gk~vvViGrS~iVGkPla~lL~-~~~atVtichs  188 (282)
T PRK14169        154 VAGKRVVIVGRSNIVGRPLAGLMV-NHDATVTIAHS  188 (282)
T ss_pred             CCCCEEEEECCCccchHHHHHHHH-HCCCEEEEECC
Confidence            367999999999999999999998 67878876643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.21  E-value=0.13  Score=44.38  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ++|.|.| +|-+|..++..|. ..|++|++++|++..
T Consensus         1 m~I~IiG-~G~~G~~~a~~L~-~~g~~V~~~~r~~~~   35 (304)
T PRK06522          1 MKIAILG-AGAIGGLFGAALA-QAGHDVTLVARRGAH   35 (304)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCeEEEEECChHH
Confidence            3799999 5999999999998 678999999996544

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.19  E-value=0.32  Score=41.31  Aligned_cols=55  Identities=22%  Similarity=0.163  Sum_probs=40.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+|+|+|.|.+..+|+.++..|+ +.+..|+.+.++..                    .+.+..+.+|.|+-.++
T Consensus       155 l~Gk~vvVvGrS~iVGkPla~lL~-~~~atVt~chs~T~--------------------nl~~~~~~ADIvIsAvG  209 (282)
T PRK14166        155 LEGKDAVIIGASNIVGRPMATMLL-NAGATVSVCHIKTK--------------------DLSLYTRQADLIIVAAG  209 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHH-HCCCEEEEeCCCCC--------------------CHHHHHhhCCEEEEcCC
Confidence            368999999999999999999998 67778886554431                    15567777775444433

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.17  E-value=0.13  Score=44.30  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .++|.|+| +|.+|..++..|+ ..|++|++.+|++..
T Consensus         4 ~~kI~vIG-aG~mG~~iA~~la-~~G~~V~l~d~~~~~   39 (292)
T PRK07530          4 IKKVGVIG-AGQMGNGIAHVCA-LAGYDVLLNDVSADR   39 (292)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHH-HCCCeEEEEeCCHHH
Confidence            47899999 6999999999999 689999999998654

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.17  E-value=0.16  Score=43.54  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~   64 (303)
                      .+++++|+|+ |..+++++..|. ..|. +|+++.|++.
T Consensus       123 ~~k~vlvlGa-GGaarAi~~~l~-~~g~~~i~i~nRt~~  159 (288)
T PRK12749        123 KGKTMVLLGA-GGASTAIGAQGA-IEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEeCCcc
Confidence            4679999995 666999999998 5665 5999999853

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.09  E-value=0.77  Score=41.06  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARK   62 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~   62 (303)
                      .+.++|+|.| .|.+|++++..|. ..|.. +++++++
T Consensus       133 l~~~~VlvvG-~GG~Gs~ia~~La-~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIG-AGGLGSPAALYLA-AAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence            3567999998 5889999999998 57775 9999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
2v6f_A	364	Structure Of Progesterone 5beta-Reductase From Digi		3e-54

>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis Lanata Length = 364

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 118/286 (41%), Positives = 164/286 (57%), Gaps = 23/286 (8%)
Query: 29  NVAVIFGVTGLVGKELARRL----ISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPL 84
           +VA+I GVTG++G  LA  L         WKVYG+AR+      + +   ++ CD+ +P 
Sbjct: 2   SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD 61
Query: 85  DIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQT 144
           D + KL+ L DVTH+F+VTWA++  S   + CE N  M  N L+A++P    LKH+SLQT
Sbjct: 62  DSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQT 119
Query: 145 GMKHYVSLQGLPEEKQVRF------YDEECPRVSKSNNFYYVLEDLLKEKLAGK--VAWS 196
           G KHY+     P E   +       Y E+ PR+ K  NFYY LED++ E++  K  + WS
Sbjct: 120 GRKHYMG----PFESYGKIESHDPPYTEDLPRL-KYMNFYYDLEDIMLEEVEKKEGLTWS 174
Query: 197 VHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAE 256
           VHRPG + G S  S+ N +G LCVY A+CKH      F G +  W+ Y  D SD+ L+AE
Sbjct: 175 VHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYS-DCSDADLIAE 233
Query: 257 QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
            HIW A +      K +AFN  NG  F WK  W  + ++FGV+  E
Sbjct: 234 HHIWAAVD---PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGE 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	3e-62
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	1e-05
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	2e-05
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	3e-05
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	7e-05
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	1e-04
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	2e-04
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	2e-04
1xq6_A	253	Unknown protein; structural genomics, protein stru	2e-04
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	5e-04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	5e-04

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score =  200 bits (509), Expect = 3e-62
 Identities = 115/282 (40%), Positives = 160/282 (56%), Gaps = 15/282 (5%)

Query: 29  NVAVIFGVTGLVGKELARRLI----STANWKVYGIARKPEITAIQSSSYCFISCDLLNPL 84
           +VA+I GVTG++G  LA  L         WKVYG+AR+      + +   ++ CD+ +P 
Sbjct: 2   SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD 61

Query: 85  DIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQT 144
           D + KL+ L DVTH+F+VTWA++  S   + CE N  M  N L+A++P    LKH+SLQT
Sbjct: 62  DSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQT 119

Query: 145 GMKHYVSLQGLP--EEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLA--GKVAWSVHRP 200
           G KHY+         E     Y E+ PR+    NFYY LED++ E++     + WSVHRP
Sbjct: 120 GRKHYMGPFESYGKIESHDPPYTEDLPRLKYM-NFYYDLEDIMLEEVEKKEGLTWSVHRP 178

Query: 201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW 260
           G + G S  S+ N +G LCVY A+CKH      F G +  W+ Y  D SD+ L+AE HIW
Sbjct: 179 GNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYS-DCSDADLIAEHHIW 237

Query: 261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
            A +      K +AFN  NG  F WK  W  + ++FGV+  E
Sbjct: 238 AAVDP---YAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGE 276

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 28/179 (15%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-ITAIQSSSYCFISCDLLNPLDI 86
           KNV +  G  G + + +  +L      K    AR+P  I     ++   I  D+LN   +
Sbjct: 24  KNVLI-LGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAAL 82

Query: 87  KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM 146
           K+    ++    ++      +                 + + A+  +A  +K +      
Sbjct: 83  KQ---AMQGQDIVY-ANLTGEDLDIQAN----------SVIAAM--KACDVKRLI----- 121

Query: 147 KHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLG 205
             +V   G+ +E   +F +     + +    +    D ++   A  + +++ RP  L  
Sbjct: 122 --FVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIE---ASGLEYTILRPAWLTD 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 48/303 (15%), Positives = 95/303 (31%), Gaps = 82/303 (27%)

Query: 23  REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLN 82
           REV   N   +     ++ + +   L +  NWK     +   +T I  SS      ++L 
Sbjct: 320 REVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDK---LTTIIESSL-----NVLE 367

Query: 83  PLDIKR---KLTLLEDVTHI-------FWVTWASQ----FASDMHK--CCEQNKAMMCNA 126
           P + ++   +L++     HI        W            + +HK    E+       +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 127 LNAIL------PRAKALKHVSLQTGMKHYVSLQGLPEEKQVR------FYD------EEC 168
           + +I          +   H S+   + HY   +    +  +       FY       +  
Sbjct: 428 IPSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 169 PRVSKSNNFYYVLEDL--LKEKL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-V 224
               +   F  V  D   L++K+     AW+    G        S+ N L  L  Y   +
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--SG--------SILNTLQQLKFYKPYI 534

Query: 225 CKHLNLP---------FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAF 275
           C +             F+        EE  +    + L+  +   +A   +  +   +A 
Sbjct: 535 CDNDPKYERLVNAILDFLPK-----IEENLICSKYTDLL--R---IALMAEDEAIFEEAH 584

Query: 276 NAI 278
             +
Sbjct: 585 KQV 587

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 41/184 (22%)

Query: 31  AVIFGVTGLVGKELARRLISTANW-KVYGIARKP-EITAIQSSSYCFISCDLLNPLDIKR 88
             I G +G  G+ L + ++    + KV  I R+          +      D     D   
Sbjct: 21  VFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYAS 80

Query: 89  KLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKH 148
                +        T     A    +             + +L  A+  K      G KH
Sbjct: 81  AFQGHDVGFCCLGTTRGKAGAEGFVRVD----------RDYVLKSAELAK----AGGCKH 126

Query: 149 --YVSLQGLPEEKQVRFYDEECPRVSKSNNFYYV-----LEDLLKEKLAGKVAWSVHRPG 201
              +S +G                  KS+NF Y+     +E  ++E       +SV RPG
Sbjct: 127 FNLLSSKG----------------ADKSSNFLYLQVKGEVEAKVEE--LKFDRYSVFRPG 168

Query: 202 LLLG 205
           +LL 
Sbjct: 169 VLLC 172

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 49/353 (13%), Positives = 92/353 (26%), Gaps = 65/353 (18%)

Query: 2   AAKEFHDEAEAATNKVSVNRGREVDAKNVAVIF--GVTGLVGKELARRLISTAN--WKVY 57
            A +   +     + ++        +  +  +   G TG +G+ L   L+   +   ++ 
Sbjct: 45  HASDLTLDRFIDADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLI 104

Query: 58  GIARKPEITAIQS------SSYCFISCDLLNPLDIKR-----------KL--------TL 92
            + R       +        S           L   R            L         L
Sbjct: 105 CLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRL 164

Query: 93  LEDVTHIF----WVTWASQFASDMHKCCEQNKAMMCNALN-AILPRAKALKHVSLQTGMK 147
            E V  I      V                N A     +  A+  + K   +VS    + 
Sbjct: 165 AETVDLIVDSAAMVNAFP---YHELF--GPNVAGTAELIRIALTTKLKPFTYVS-TADVG 218

Query: 148 HYVSLQGLPEEKQVRFYDEECPRVSKSNNFY----YVLEDLLKEKLAGK---VAWSVHRP 200
             +      E+  +R               Y    +  E LL+E  A     +  +V R 
Sbjct: 219 AAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLRE--ANDLCALPVAVFRC 276

Query: 201 GLLLGSSHRS--------LYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSR 252
           G++L  +  +        +   +  L   G   +    P   G  +        DG    
Sbjct: 277 GMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAH----FDGLPVT 332

Query: 253 LVAEQHIWVATNDDISS-TKGQAFNAINGPR--FTWKEIWPSIGKKFGVKVPE 302
            VAE    +      SS      ++ +N         E    +  + G  +  
Sbjct: 333 FVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWL-IEAGYPIRR 384

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 17/179 (9%)

Query: 32  VIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT 91
            I G TG  G  +     +    +V  I R              +  D+ +         
Sbjct: 4   GIIGATGRAGSRILEEAKN-RGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL------ 56

Query: 92  LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVS 151
              D++    V  A   + D     E++   + + ++ +         + +  G     S
Sbjct: 57  --SDLSDQNVVVDAYGISPDEA---EKHVTSLDHLISVL--NGTVSPRLLVVGGA---AS 106

Query: 152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGSSHRS 210
           LQ   +   +                    +    +    + +W+   P  +     R+
Sbjct: 107 LQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGERT 165

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 16/183 (8%), Positives = 46/183 (25%), Gaps = 45/183 (24%)

Query: 32  VIFGVTGLVGKELARRLISTANWKVYGIARKPE----ITAIQSSSYCFISCDLLNPLDIK 87
            I G  G + + L   L++  +  +    R+ +       I       I     NP  ++
Sbjct: 9   TILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLE 68

Query: 88  RKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMK 147
           +    + +   +F                                   ++     +  ++
Sbjct: 69  Q---AVTNAEVVFV------------------------GAMESGSDMASIVKALSRXNIR 101

Query: 148 HYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAG-------KVAWSVHRP 200
             + +              E P   +   F  +    ++ +           + +++ R 
Sbjct: 102 RVIGVSMA-------GLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRL 154

Query: 201 GLL 203
             L
Sbjct: 155 TWL 157

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 39/288 (13%), Positives = 76/288 (26%), Gaps = 64/288 (22%)

Query: 35  GVTGLVGKELARRLISTANWKVYGIARKPE-ITAIQSSSYCFISCDLLNPLDIKRKLTLL 93
           G TGL+G   AR + + A   +  I R    I  +          ++L+   ++R    L
Sbjct: 20  GATGLLGHHAARAIRA-AGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLER---AL 75

Query: 94  EDVTHIF----WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK--HVSLQTGMK 147
             +  +     +     +   +                 A L +A+  +  +V       
Sbjct: 76  RGLDGVIFSAGYYPSRPRRWQEEVAS---ALGQTNPFYAACL-QARVPRILYVG------ 125

Query: 148 HYVSLQGLPEEKQVRFYDEECP--RVSKSNNFYYVLEDLLKEKLAG-KVAWSVHRPGLLL 204
              S   +P   Q     E      +    + Y         K A  + A    R GL +
Sbjct: 126 ---SAYAMPRHPQGLPGHEGLFYDSLPSGKSSYV------LCKWALDEQAREQARNGLPV 176

Query: 205 -----------GSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL 253
                           +    +       A+     +     G R +         D+  
Sbjct: 177 VIGIPGMVLGELDIGPTTGRVI------TAIGNG-EMTHYVAGQRNV--------IDAAE 221

Query: 254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP 301
                +       I    G+ +  + G      ++   I +  G   P
Sbjct: 222 AGRGLLMALERGRI----GERYL-LTGHNLEMADLTRRIAELLGQPAP 264

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 26/129 (20%)

Query: 27  AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE---ITAIQSSSYCFISCDLLNP 83
            K + V+FG TG  G  +AR L+    +KV  + R P       ++      +  D  + 
Sbjct: 4   DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQ 63

Query: 84  LDIKRKLTLLEDVTHIFWVT--WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS 141
           + ++     L      F VT  W S                        + + K L  ++
Sbjct: 64  VIMEL---ALNGAYATFIVTNYWESCSQEQE------------------VKQGKLLADLA 102

Query: 142 LQTGMKHYV 150
            + G+ + V
Sbjct: 103 RRLGLHYVV 111

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 23/178 (12%), Positives = 56/178 (31%), Gaps = 29/178 (16%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYC-FISCDLLNPLDI 86
           K +A+ FG TG  G     + +  A ++V  + R       +       +  D+L   D+
Sbjct: 4   KKIAI-FGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADV 61

Query: 87  KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM 146
            +    +     +  +       S      E  + +             A+K      G+
Sbjct: 62  DK---TVAGQDAVIVLLGTRNDLSPTTVMSEGARNI-----------VAAMK----AHGV 103

Query: 147 KHYVSLQGLPEEKQVRFYDEECPRVSKS-NNFYYVLEDLLKEKLAGKVAWSVHRPGLL 203
              V+         + +   + P   ++  + +  +  +L+E     + +    P  +
Sbjct: 104 DKVVACTSAF----LLWDPTKVPPRLQAVTDDHIRMHKVLRES---GLKYVAVMPPHI 154

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 38/286 (13%), Positives = 80/286 (27%), Gaps = 50/286 (17%)

Query: 26  DAKNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITAIQSSSYCFISCDLLNPL 84
           +   V V  G +G  G+ + ++L      +   G+ R  +              D+ +  
Sbjct: 3   NLPTVLVT-GASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDAD 61

Query: 85  DIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL-- 142
            I       + +  +  +T A           +  +            +   +   +   
Sbjct: 62  SINP---AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 118

Query: 143 ---QTGMKHYV---SLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWS 196
                G+KH V   S+ G   +  +         V K        E  L         ++
Sbjct: 119 AAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWK-----RKAEQYLA---DSGTPYT 170

Query: 197 VHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAE 256
           + R G LL                   +    +   +   T+ +             VAE
Sbjct: 171 IIRAGGLLDKEGGVR-----------ELLVGKDDELLQTDTKTV---------PRADVAE 210

Query: 257 QHIWVATNDDISSTKGQAFNAINGPRFT------WKEIWPSIGKKF 296
             I     ++    K +AF+  + P  T      +K ++  +  +F
Sbjct: 211 VCIQALLFEE---AKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 31/179 (17%)

Query: 32  VIFGVTGLVGKELARRLISTANWKVYGIARKPE-----ITAIQSSSYCFISCDLLNPLDI 86
           +I G  G +G ELARRL +    +V G+ R  +     +  +          D+  P  +
Sbjct: 7   LIAG-CGDLGLELARRLTA-QGHEVTGLRRSAQPMPAGVQTLI--------ADVTRPDTL 56

Query: 87  KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM 146
              + L  ++     V  AS+++ + ++        + N L+A+      L+HV      
Sbjct: 57  ASIVHLRPEILVYC-VA-ASEYSDEHYR--LSYVEGLRNTLSAL--EGAPLQHVF----- 105

Query: 147 KHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLG 205
             +VS  G+  ++   + DE+ P ++K  +   +LE    E L    + ++ R   + G
Sbjct: 106 --FVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLE---AEALLAAYSSTILRFSGIYG 159

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 31 AVIFGVTGLVGKELARRLISTANW-KVYGIARKPEIT 66
           ++ G TGL G+ L  R++S     KV   ARK    
Sbjct: 8  VLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	100.0
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	100.0
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	100.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	100.0
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	100.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	100.0
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	100.0
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	100.0
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.98
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.98
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.97
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.97
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.97
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.97
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.97
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.97
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.97
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.97
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.97
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.97
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.97
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.97
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.97
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.97
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.97
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.97
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.97
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.97
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.97
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.97
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.97
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.97
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.97
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.97
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.96
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.96
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.96
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.96
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.96
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.96
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.96
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.96
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.96
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.96
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.96
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.96
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.96
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.96
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.96
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.96
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.95
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.95
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.95
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.95
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.95
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.95
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.95
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.95
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.94
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.94
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.94
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.94
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.94
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.94
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.94
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.93
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.93
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.93
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.93
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.93
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.93
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.93
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.93
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.93
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.93
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.93
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.91
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.9
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.9
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.89
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.89
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.89
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.88
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.88
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.88
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.88
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.86
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.86
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.86
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.84
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.84
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.83
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.83
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.83
1spx_A	278	Short-chain reductase family member (5L265); paral	99.82
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.82
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.81
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.81
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.81
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.81
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.81
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.8
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.79
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.79
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.79
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.79
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.78
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.78
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.78
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.78
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.78
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.78
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.78
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.78
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.77
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.77
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.77
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.77
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.77
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.77
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.77
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.77
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.77
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.77
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.77
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.77
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.77
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.77
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.77
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.77
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.77
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.77
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.76
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.76
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.76
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.76
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.76
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.76
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.76
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.76
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.76
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.76
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.76
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.75
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.75
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.75
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.75
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.75
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.75
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.75
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.75
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.75
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.75
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.75
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.75
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.75
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.75
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.75
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.75
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.75
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.75
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.75
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.75
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.75
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.75
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.75
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.75
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.74
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.74
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.74
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.74
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.74
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.74
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.74
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.74
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.74
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.74
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.74
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.74
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.74
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.74
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.74
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.74
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.73
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.73
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.73
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.73
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.73
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.73
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.73
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.73
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.73
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.73
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.73
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.73
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.73
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.73
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.73
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.73
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.73
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.73
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.73
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.73
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.73
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.73
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.73
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.73
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.73
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.73
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.72
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.72
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.72
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.72
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.72
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.72
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.72
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.72
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.72
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.72
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.71
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.71
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.71
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.71
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.71
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.71
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.71
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.71
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.71
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.7
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.7
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.7
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.7
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.7
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.7
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.7
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.7
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.69
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.69
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.69
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.69
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.69
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.69
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.69
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.69
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.69
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.69
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.68
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.68
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.68
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.68
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.68
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.68
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.68
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.68
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.67
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.67
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.66
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.66
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.66
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.66
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.65
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.64
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.64
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.63
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.63
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.63
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.63
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.62
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.62
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.62
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.62
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.62
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.61
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.6
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.59
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.59
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.59
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.59
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.59
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.59
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.58
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.57
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.56
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.54
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.54
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.53
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.53
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.52
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.52
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.51
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.51
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.51
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.5
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.5
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.48
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.46
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.43
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.42
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.41
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.3
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.29
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.27
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.26
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.25
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.0
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.99
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	98.95
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	98.9
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	98.9
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	98.86
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	98.86
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	98.84
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	98.83
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	98.81
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.77
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.67
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.56
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.47
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.45
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.41
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.41
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.4
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.4
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.39
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.37
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.34
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.28
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.24
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.19
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.15
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.11
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.07
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.07
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.04
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	97.99
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.93
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.91
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.91
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.9
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.82
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.56
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	97.46
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.4
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.4
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.31
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.3
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.26
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.25
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.18
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.18
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.17
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.17
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.13
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.13
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.12
1lnq_A	336	MTHK channels, potassium channel related protein;	97.1
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.02
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.99
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.99
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.94
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.93
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.91
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.89
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.89
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.82
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.78
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.77
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.77
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.75
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.72
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.69
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.69
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.69
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.69
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.68
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.66
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.66
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.62
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.61
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.6
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.58
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.57
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.55
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.53
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	96.51
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.5
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.5
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.5
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.5
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.47
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.45
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.45
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.41
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.41
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.4
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.37
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.32
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.3
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.3
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.29
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.28
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	96.27
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.27
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.25
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.22
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.22
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.2
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.19
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.14
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.12
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.11
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.1
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.09
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.05
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.05
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.99
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.99
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.94
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.93
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.89
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.89
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.88
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.88
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.86
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.84
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	95.84
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.8
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.79
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.77
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.7
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.68
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.67
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.66
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.65
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.65
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.63
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.62
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.59
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.59
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.57
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.56
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.55
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.55
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.53
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.51
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.51
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.5
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.5
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.49
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.44
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.41
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.39
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.36
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	95.32
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.32
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.3
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	95.3
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	95.3
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.29
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.28
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.27
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.27
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.23
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.19
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.19
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.18
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.17
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	95.17
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.17
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.16
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.13
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.11
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.11
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.1
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.1
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.1
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.09
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.09
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.09
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.08
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	95.04
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.04
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.04
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.04
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.03
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.01
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.96
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	94.95
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.93
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	94.91
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.87
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.86
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.86
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.85
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.83
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	94.8
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.78
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.75

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=100.00  E-value=9.3e-33  Score=243.63  Aligned_cols=262  Identities=39%  Similarity=0.731  Sum_probs=198.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC-----CeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc---cCceeEEe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN-----WKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIF  100 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~  100 (303)
                      |+|||||||||||++|+++|+ +.|     ++|++++|++........+++++.+|+.|.+++.+++++   +|.|+|++
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~-~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILP-LADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTT-STTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHH-hCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            689999999999999999999 678     999999998765433345789999999999999999998   78899997


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccc--ccCCcCcCCCCCCCCccch
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEK--QVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~--~~~~~~e~~~~~p~~~~~~  178 (303)
                      +...  .   ++.+.++.|+.++.+++++|++..+++.+++..+|..+|.++..+||..  ...+++|+++..| .++.|
T Consensus        81 ~~~~--~---~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~-~~~~y  154 (364)
T 2v6g_A           81 WANR--S---TEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLK-YMNFY  154 (364)
T ss_dssp             CCCC--S---SHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCS-SCCHH
T ss_pred             CCCc--c---hHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCc-cchhh
Confidence            7542  1   2334789999999999999998644577777655555565555556542  2357788877653 23455


Q ss_pred             HHHHHHHHHHhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHH
Q 042242          179 YVLEDLLKEKLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAE  256 (303)
Q Consensus       179 y~~~k~~~e~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~  256 (303)
                      |..|+.+.++.. .. ++++++||+.|||++.....+.......+..+.+..+.++.++|....+ +.+++++|++|+|+
T Consensus       155 ~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~v~Dva~  233 (364)
T 2v6g_A          155 YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAW-DGYSDCSDADLIAE  233 (364)
T ss_dssp             HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHH-HSCBCCEEHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccc-cccCCCCcHHHHHH
Confidence            777888877654 23 8999999999999765433232222222222321235666667887777 88999999999999


Q ss_pred             HHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          257 QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       257 a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +++.++..+...   |++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       234 a~~~~~~~~~~~---g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  275 (364)
T 2v6g_A          234 HHIWAAVDPYAK---NEAFNVSNGDVFKWKHFWKVLAEQFGVECG  275 (364)
T ss_dssp             HHHHHHHCGGGT---TEEEEECCSCCBCHHHHHHHHHHHHTCCBC
T ss_pred             HHHHHHhCCCCC---CceEEecCCCcCCHHHHHHHHHHHhCCCCC
Confidence            999998876433   389999999999999999999999997643

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=100.00  E-value=6e-33  Score=243.75  Aligned_cols=251  Identities=18%  Similarity=0.141  Sum_probs=189.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-----c-C------CCeEEEEecCCCHHHHHHHHhcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-----Q-S------SSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-----~-~------~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      +++|+|||||||||||++|+++|+ +.|++|++++|++.....     . .      .+++++.+|+.|.+++.++++++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLL-KLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            356899999999999999999999 689999999997654220     0 0      68999999999999999999999


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      |.|+|+++.........++.+.+++|+.++.+++++|++..  +.+++++|+..+|+..       ...+++|+++..|.
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~~v~~SS~~vyg~~-------~~~~~~E~~~~~p~  172 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ--VQSFTYAASSSTYGDH-------PALPKVEENIGNPL  172 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CSEEEEEEEGGGGTTC-------CCSSBCTTCCCCCC
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEEecHHhcCCC-------CCCCCccCCCCCCC
Confidence            99999987644433444555688999999999999999873  4566777766677554       24578898887766


Q ss_pred             CccchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhc
Q 042242          174 SNNFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       174 ~~~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                      ++   |+.+|...|.     .  .+ ++++++||+.|||++......+...+..+.. +.+  +.++.+.|..    ...
T Consensus       173 ~~---Y~~sK~~~E~~~~~~~~~~g-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~g----~~~  242 (351)
T 3ruf_A          173 SP---YAVTKYVNEIYAQVYARTYG-FKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLK--GDDVYINGDG----ETS  242 (351)
T ss_dssp             SH---HHHHHHHHHHHHHHHHHHHC-CCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHH--TCCCEEESSS----CCE
T ss_pred             Ch---hHHHHHHHHHHHHHHHHHhC-CCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHc--CCCcEEeCCC----CeE
Confidence            66   8888877762     2  24 9999999999999764422111011111111 222  3444444433    566


Q ss_pred             ccCccHHHHHHHHHHHhcCc-CCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          246 LDGSDSRLVAEQHIWVATND-DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~-~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      .++++++|+|++++.++..+ ...   +++||+++++.+|+.|+++.+++.+|++
T Consensus       243 ~~~i~v~Dva~a~~~~~~~~~~~~---~~~~ni~~~~~~s~~e~~~~i~~~~g~~  294 (351)
T 3ruf_A          243 RDFCYIDNVIQMNILSALAKDSAK---DNIYNVAVGDRTTLNELSGYIYDELNLI  294 (351)
T ss_dssp             ECCEEHHHHHHHHHHHHTCCGGGC---SEEEEESCSCCEEHHHHHHHHHHHHHTT
T ss_pred             EeeEEHHHHHHHHHHHHhhccccC---CCEEEeCCCCcccHHHHHHHHHHHhCcc
Confidence            78999999999999988873 333   4899999999999999999999999983

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=100.00  E-value=4.1e-32  Score=234.60  Aligned_cols=242  Identities=14%  Similarity=0.122  Sum_probs=182.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS  106 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~  106 (303)
                      |+++|||||||||||++|+++|+ +.|++|++++|++....  ..+++++.+|+. .+++.++++++|.|+|+++.....
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~--~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~~~   76 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIK-NDGNTPIILTRSIGNKA--INDYEYRVSDYT-LEDLINQLNDVDAVVHLAATRGSQ   76 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCCC-------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCCCSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-hCCCEEEEEeCCCCccc--CCceEEEEcccc-HHHHHHhhcCCCEEEEccccCCCC
Confidence            56899999999999999999999 68999999999944332  348899999999 999999999999999998764433


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                          ++.+.++.|+.++.+++++|++.+  +.+++++|+..+|+..       ...+++|+++..|.++   |+.+|...
T Consensus        77 ----~~~~~~~~n~~~~~~ll~a~~~~~--~~r~v~~SS~~vyg~~-------~~~~~~E~~~~~p~~~---Y~~sK~~~  140 (311)
T 3m2p_A           77 ----GKISEFHDNEILTQNLYDACYENN--ISNIVYASTISAYSDE-------TSLPWNEKELPLPDLM---YGVSKLAC  140 (311)
T ss_dssp             ----SCGGGTHHHHHHHHHHHHHHHHTT--CCEEEEEEEGGGCCCG-------GGCSBCTTSCCCCSSH---HHHHHHHH
T ss_pred             ----ChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEEccHHHhCCC-------CCCCCCCCCCCCCCch---hHHHHHHH
Confidence                222368999999999999999863  4466666666677544       2467889888776666   88888777


Q ss_pred             HH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          187 EK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       187 e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      |.     .... ++++++||+.+||++.... .+...+.  ..+.  .+.++.+.|..    ....++++++|+|++++.
T Consensus       141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~--~~~~--~~~~~~~~g~~----~~~~~~v~v~Dva~a~~~  211 (311)
T 3m2p_A          141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN-YMINRFF--RQAF--HGEQLTLHANS----VAKREFLYAKDAAKSVIY  211 (311)
T ss_dssp             HHHHHHHHHHSCCEEEEEEECEEECSCC--C-CHHHHHH--HHHH--TCCCEEESSBC----CCCEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEeeCceeCcCCCCC-CHHHHHH--HHHH--cCCCeEEecCC----CeEEceEEHHHHHHHHHH
Confidence            62     2212 9999999999999754421 2212211  1122  25566665544    456678999999999999


Q ss_pred             HhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++..+. .   +++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       212 ~~~~~~-~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  248 (311)
T 3m2p_A          212 ALKQEK-V---SGTFNIGSGDALTNYEVANTINNAFGNKDN  248 (311)
T ss_dssp             HTTCTT-C---CEEEEECCSCEECHHHHHHHHHHHTTCTTC
T ss_pred             HHhcCC-C---CCeEEeCCCCcccHHHHHHHHHHHhCCCCc
Confidence            988775 3   389999999999999999999999998754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=100.00  E-value=3.1e-32  Score=241.05  Aligned_cols=262  Identities=13%  Similarity=0.208  Sum_probs=188.7

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCC-CHHHHHHHHhccCceeE
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLL-NPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~-~~~~l~~~~~~~~~V~~   98 (303)
                      ....+++|+|||||||||||++|+++|++..||+|++++|++.+..  ...++++++.+|++ |.+.+.++++++|.|+|
T Consensus        18 ~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih   97 (372)
T 3slg_A           18 GPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILP   97 (372)
T ss_dssp             -----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred             CCcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence            3445567899999999999999999999434899999999876543  22468999999999 99999999999999999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC---C-CC
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV---S-KS  174 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~---p-~~  174 (303)
                      +|+.........++.+.+++|+.++.+++++|++.+   .+++++|+..+|+...       ..++.|+++..   | ..
T Consensus        98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~---~~~v~~SS~~vyg~~~-------~~~~~e~~~~~~~~p~~~  167 (372)
T 3slg_A           98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPSTSEVYGMCA-------DEQFDPDASALTYGPINK  167 (372)
T ss_dssp             CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT---CEEEEECCGGGGBSCC-------CSSBCTTTCCEEECCTTC
T ss_pred             cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC---CcEEEeCcHHHhCCCC-------CCCCCccccccccCCCCC
Confidence            987654433334455688999999999999999875   5777777777886542       34566666431   1 12


Q ss_pred             ccchHHHHHHHHHH-----hc-CCcceEEecCCceeecCCCCccc----hhhHHHHHHH-HhhhCCCceeeCCchhhhhh
Q 042242          175 NNFYYVLEDLLKEK-----LA-GKVAWSVHRPGLLLGSSHRSLYN----FLGCLCVYGA-VCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       175 ~~~~y~~~k~~~e~-----~~-~~~~~~ilRp~~v~G~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~  243 (303)
                      |...|+.+|...|.     .. + ++++++||+.|||++......    ....+..+.. +.+  +.++.+.+..    .
T Consensus       168 p~~~Y~~sK~~~E~~~~~~~~~g-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g----~  240 (372)
T 3slg_A          168 PRWIYACSKQLMDRVIWGYGMEG-LNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVR--GENISLVDGG----S  240 (372)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHH--TCCEEEGGGG----C
T ss_pred             CCCcHHHHHHHHHHHHHHHHHCC-CCEEEEccccccCCCcccccccccccchHHHHHHHHHHc--CCCcEEeCCC----c
Confidence            33348888887772     11 4 999999999999976432110    0011111111 222  4555655543    5


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC-CCccHHhhHHHHHHHhcccCC
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING-PRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~-~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ...++++++|+|++++.++..+... ..+++||++++ +.+|+.|+++.+++.+|++.+
T Consensus       241 ~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~  298 (372)
T 3slg_A          241 QKRAFTYVDDGISALMKIIENSNGV-ATGKIYNIGNPNNNFSVRELANKMLELAAEFPE  298 (372)
T ss_dssp             CEEECEEHHHHHHHHHHHHHCGGGT-TTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTT
T ss_pred             eEEEEEEHHHHHHHHHHHHhcccCc-CCCceEEeCCCCCCccHHHHHHHHHHHhCCCcc
Confidence            6678999999999999999877521 12489999994 899999999999999998754

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=100.00  E-value=7.7e-32  Score=236.21  Aligned_cols=249  Identities=12%  Similarity=0.070  Sum_probs=182.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc--cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL--LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~--~~~   95 (303)
                      ++|+|||||||||||++|+++|+ +.|  ++|++++|......       ...++++++.+|+.|.+.+.+++++  +|.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~-~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~  101 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYML-QSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV  101 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHH-HHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred             CCCeEEEECCccHHHHHHHHHHH-hhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence            35799999999999999999999 566  78999888653221       1125899999999999999999998  788


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |+|+++.........++.+.+++|+.++.+++++|++.+  ..+++++|+..+|+....      ..+++|+++..|..+
T Consensus       102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~~v~~SS~~vy~~~~~------~~~~~E~~~~~p~~~  173 (346)
T 4egb_A          102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP--HIKLVQVSTDEVYGSLGK------TGRFTEETPLAPNSP  173 (346)
T ss_dssp             EEECCCCC---------CHHHHHHTHHHHHHHHHHHHST--TSEEEEEEEGGGGCCCCS------SCCBCTTSCCCCCSH
T ss_pred             EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEeCchHHhCCCCc------CCCcCCCCCCCCCCh
Confidence            999987655444444555689999999999999999873  456666676668865422      457889888877777


Q ss_pred             cchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC
Q 042242          176 NFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                         |+.+|...|.     .  .+ ++++++||+.|||++.... .+...+  ...+..  +.++.+.|..    ....++
T Consensus       174 ---Y~~sK~~~E~~~~~~~~~~g-~~~~ilRp~~v~G~~~~~~-~~~~~~--~~~~~~--~~~~~~~~~~----~~~~~~  240 (346)
T 4egb_A          174 ---YSSSKASADMIALAYYKTYQ-LPVIVTRCSNNYGPYQYPE-KLIPLM--VTNALE--GKKLPLYGDG----LNVRDW  240 (346)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECEEESTTCCTT-SHHHHH--HHHHHT--TCCCEEETTS----CCEECE
T ss_pred             ---hHHHHHHHHHHHHHHHHHhC-CCEEEEeecceeCcCCCcc-chHHHH--HHHHHc--CCCceeeCCC----CeEEee
Confidence               8888877762     2  24 9999999999999754321 221111  111222  4444444433    566789


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++++|+|++++.++..+. .   |++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       241 i~v~Dva~a~~~~~~~~~-~---g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  289 (346)
T 4egb_A          241 LHVTDHCSAIDVVLHKGR-V---GEVYNIGGNNEKTNVEVVEQIITLLGKTKK  289 (346)
T ss_dssp             EEHHHHHHHHHHHHHHCC-T---TCEEEECCSCCEEHHHHHHHHHHHHTCCGG
T ss_pred             EEHHHHHHHHHHHHhcCC-C---CCEEEECCCCceeHHHHHHHHHHHhCCCcc
Confidence            999999999999988765 3   379999999999999999999999998754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=100.00  E-value=1e-31  Score=235.53  Aligned_cols=251  Identities=14%  Similarity=0.098  Sum_probs=182.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~  104 (303)
                      ..++|+|||||||||||++|+++|+ +.|++|++++|++..     .+++++.+|+.|.+++.++++++|.|+|+++...
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~   89 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALR-TQGRTVRGFDLRPSG-----TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMS   89 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHH-HTTCCEEEEESSCCS-----SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHH-hCCCEEEEEeCCCCC-----CCccEEecCcCCHHHHHHHHhCCCEEEECCcccC
Confidence            3356899999999999999999999 689999999998754     5788999999999999999999999999987644


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ......  .+.+++|+.++.+++++|++..  ..+++++|+..+|+....     ...++.|+++..|.++   |+.+|.
T Consensus        90 ~~~~~~--~~~~~~nv~~~~~ll~a~~~~~--~~~~V~~SS~~vyg~~~~-----~~~~~~E~~~~~~~~~---Y~~sK~  157 (347)
T 4id9_A           90 WAPADR--DRMFAVNVEGTRRLLDAASAAG--VRRFVFASSGEVYPENRP-----EFLPVTEDHPLCPNSP---YGLTKL  157 (347)
T ss_dssp             SSGGGH--HHHHHHHTHHHHHHHHHHHHTT--CSEEEEEEEGGGTTTTSC-----SSSSBCTTSCCCCCSH---HHHHHH
T ss_pred             cchhhH--HHHHHHHHHHHHHHHHHHHHcC--CCeEEEECCHHHhCCCCC-----CCCCcCCCCCCCCCCh---HHHHHH
Confidence            333333  4489999999999999998763  456677777678865311     2557888888776666   888888


Q ss_pred             HHHH-----hcCC-cceEEecCCcee-------------ecCCCCccc-------hhhHHHHHHHHhhhCCCceeeCCch
Q 042242          185 LKEK-----LAGK-VAWSVHRPGLLL-------------GSSHRSLYN-------FLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       185 ~~e~-----~~~~-~~~~ilRp~~v~-------------G~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                      ..|.     .... ++++++||+.+|             |++......       ....+..+.. ....+.++...|..
T Consensus       158 ~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  236 (347)
T 4id9_A          158 LGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQ-SRDIGEPSHILARN  236 (347)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHH-HHCCSSCCEEEEEC
T ss_pred             HHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHH-HHHcCCCeEEeCCC
Confidence            7772     2222 999999999999             643211000       0001111111 11124454444433


Q ss_pred             hhhhhhcccC----ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          239 EIWEEYCLDG----SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       239 ~~~~~~~~~~----~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                          ....++    ++++|+|++++.++..+...+   ++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       237 ----~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  296 (347)
T 4id9_A          237 ----ENGRPFRMHITDTRDMVAGILLALDHPEAAG---GTFNLGADEPADFAALLPKIAALTGLPIV  296 (347)
T ss_dssp             ----TTCCBCEECEEEHHHHHHHHHHHHHCGGGTT---EEEEESCSSCEEHHHHHHHHHHHHCCCEE
T ss_pred             ----CcccCCccCcEeHHHHHHHHHHHhcCcccCC---CeEEECCCCcccHHHHHHHHHHHhCCCCc
Confidence                333455    999999999999998875433   89999999999999999999999998654

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=100.00  E-value=2.7e-31  Score=229.62  Aligned_cols=245  Identities=16%  Similarity=0.100  Sum_probs=179.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc-cccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-ITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      |+|||||||||||++|+++|+ +.| .+++++++.. .......+++++.+|+.+ +++.++++++|.|+|+++......
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~-~~g-~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~~~~~   78 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLS-ESN-EIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVRI   78 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHT-TTS-CEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCCCCC-
T ss_pred             CEEEEECCCchHHHHHHHHHH-hCC-CEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCCChhh
Confidence            589999999999999999999 577 5555555443 333345678999999999 889999999999999987654444


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                      +..++.+.+++|+.++.++++++++..  ..+++++|+..+|+..       ...++.|+.+..|.++   |+.+|...|
T Consensus        79 ~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~vyg~~-------~~~~~~E~~~~~~~~~---Y~~sK~~~e  146 (313)
T 3ehe_A           79 GAENPDEIYRNNVLATYRLLEAMRKAG--VSRIVFTSTSTVYGEA-------KVIPTPEDYPTHPISL---YGASKLACE  146 (313)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGGCSC-------SSSSBCTTSCCCCCSH---HHHHHHHHH
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEeCchHHhCcC-------CCCCCCCCCCCCCCCH---HHHHHHHHH
Confidence            444445589999999999999998763  4467777777777654       2456888887766666   888887776


Q ss_pred             H-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          188 K-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       188 ~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      .     .... ++++++||+.|||++...  ..+..+  ...+.+ ...++...|..    .+..++++++|+|++++.+
T Consensus       147 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~--~~~~~~-~~~~~~~~~~g----~~~~~~i~v~Dva~a~~~~  217 (313)
T 3ehe_A          147 ALIESYCHTFDMQAWIYRFANVIGRRSTH--GVIYDF--IMKLKR-NPEELEILGNG----EQNKSYIYISDCVDAMLFG  217 (313)
T ss_dssp             HHHHHHHHHTTCEEEEEECSCEESTTCCC--SHHHHH--HHHHHH-CTTEEEESTTS----CCEECCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEeeccccCcCCCc--ChHHHH--HHHHHc-CCCceEEeCCC----CeEEeEEEHHHHHHHHHHH
Confidence            2     2222 999999999999975432  111111  111222 12444455543    4667899999999999998


Q ss_pred             hcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          262 ATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +... .   .+++||+++++.+|+.|+++.+++.+|++++
T Consensus       218 ~~~~-~---~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  253 (313)
T 3ehe_A          218 LRGD-E---RVNIFNIGSEDQIKVKRIAEIVCEELGLSPR  253 (313)
T ss_dssp             TTCC-S---SEEEEECCCSCCEEHHHHHHHHHHHTTCCCE
T ss_pred             hccC-C---CCceEEECCCCCeeHHHHHHHHHHHhCCCCc
Confidence            8733 2   2489999999999999999999999998653

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=100.00  E-value=2.1e-31  Score=230.19  Aligned_cols=245  Identities=16%  Similarity=0.037  Sum_probs=182.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      |+|||||||||||++|+++|+ +.|++|++++|.+.... ....+++++.+|+.|.+ +.+.+++ |.|+|+++......
T Consensus         1 m~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~~~~   77 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLV-ELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPEVRL   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCSSSG
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCEEEEEeCCCCCchhhcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCCchh
Confidence            589999999999999999999 68999999999876533 33568899999999998 8888887 77999987654444


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                      +..++...+++|+.++.++++++++..  ..+++++|+..+|+..       ...++.|+.+..|.++   |+.+|...|
T Consensus        78 ~~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~iv~~SS~~vyg~~-------~~~~~~e~~~~~p~~~---Y~~sK~~~e  145 (312)
T 3ko8_A           78 STTEPIVHFNENVVATFNVLEWARQTG--VRTVVFASSSTVYGDA-------DVIPTPEEEPYKPISV---YGAAKAAGE  145 (312)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEEEGGGGCSC-------SSSSBCTTSCCCCCSH---HHHHHHHHH
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeCcHHHhCCC-------CCCCCCCCCCCCCCCh---HHHHHHHHH
Confidence            444455588999999999999998763  3466666666677654       2456888887776666   888888776


Q ss_pred             H-----hc--CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          188 K-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       188 ~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      .     ..  + ++++++||+++||++....  ....+  ...+.. ...++...+..    ....++++++|+|++++.
T Consensus       146 ~~~~~~~~~~g-~~~~~lrp~~v~g~~~~~~--~~~~~--~~~~~~-~~~~~~~~~~g----~~~~~~i~v~Dva~a~~~  215 (312)
T 3ko8_A          146 VMCATYARLFG-VRCLAVRYANVVGPRLRHG--VIYDF--IMKLRR-NPNVLEVLGDG----TQRKSYLYVRDAVEATLA  215 (312)
T ss_dssp             HHHHHHHHHHC-CEEEEEEECEEECTTCCSS--HHHHH--HHHHHH-CTTEEEEC--------CEECEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCEEEEeeccccCcCCCCC--hHHHH--HHHHHh-CCCCeEEcCCC----CeEEeeEEHHHHHHHHHH
Confidence            2     22  4 8999999999999754321  11111  111222 12344445543    466789999999999999


Q ss_pred             HhcC---cCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          261 VATN---DDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       261 ~~~~---~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++..   +..   .+++||+++++.+|+.|+++.+++.+|++.+
T Consensus       216 ~~~~~~~~~~---~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  256 (312)
T 3ko8_A          216 AWKKFEEMDA---PFLALNVGNVDAVRVLDIAQIVAEVLGLRPE  256 (312)
T ss_dssp             HHHHHHHSCC---SEEEEEESCSSCEEHHHHHHHHHHHHTCCCE
T ss_pred             HHHhccccCC---CCcEEEEcCCCceeHHHHHHHHHHHhCCCCc
Confidence            9877   333   2489999999999999999999999997653

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.98  E-value=2e-30  Score=228.73  Aligned_cols=244  Identities=14%  Similarity=0.052  Sum_probs=180.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhc--CCCeEEEEecCCc------------cc--cccCCCeEEEEecCCCHHHHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLIST--ANWKVYGIARKPE------------IT--AIQSSSYCFISCDLLNPLDIKRK   89 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r~~~------------~~--~~~~~~~~~~~~D~~~~~~l~~~   89 (303)
                      +++|+|||||||||||++|+++|+ +  .|++|++++|.+.            ..  .....++.++.+|+.|.+++.++
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~-~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   86 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQ-ENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL   86 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHH-hhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh
Confidence            346899999999999999999999 6  7999999999764            11  12234678999999999999998


Q ss_pred             -HhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           90 -LTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        90 -~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                       +.++|.|+|+|+.....  ..++.+.+++|+.++.++++++++.+.+   ++++|+..+|+..        ..+++|++
T Consensus        87 ~~~~~D~vih~A~~~~~~--~~~~~~~~~~Nv~gt~~ll~aa~~~~~~---~V~~SS~~vyg~~--------~~~~~E~~  153 (362)
T 3sxp_A           87 EKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSKKAK---VIYASSAGVYGNT--------KAPNVVGK  153 (362)
T ss_dssp             TTSCCSEEEECCCCCGGG--CCCHHHHHHHHTHHHHHHHHHHHHTTCE---EEEEEEGGGGCSC--------CSSBCTTS
T ss_pred             hccCCCEEEECCccCCcc--ccCHHHHHHHHHHHHHHHHHHHHHcCCc---EEEeCcHHHhCCC--------CCCCCCCC
Confidence             78888899998754332  2233348999999999999999887433   5555555577554        23788888


Q ss_pred             CCCCCCccchHHHHHHHHHHh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhh
Q 042242          169 PRVSKSNNFYYVLEDLLKEKL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~  243 (303)
                      +..|.++   |+.+|...|..   ... ++++++||+++||++..........+..+.. +.  .+.++...+..    .
T Consensus       154 ~~~p~~~---Y~~sK~~~E~~~~~~~~~~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g----~  224 (362)
T 3sxp_A          154 NESPENV---YGFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAM--AFKEVKLFEFG----E  224 (362)
T ss_dssp             CCCCSSH---HHHHHHHHHHHHHHTTTTSCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHH--TTSEEECSGGG----C
T ss_pred             CCCCCCh---hHHHHHHHHHHHHHHhccCCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHH--hCCCeEEECCC----C
Confidence            8777777   99988888732   122 8899999999999765422111011111111 22  24555554443    4


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      ...++++++|+|++++.++..+.    .| +||+++++.+|+.|+++.+++.+|
T Consensus       225 ~~~~~i~v~Dva~ai~~~~~~~~----~g-~~~i~~~~~~s~~e~~~~i~~~~g  273 (362)
T 3sxp_A          225 QLRDFVYIEDVIQANVKAMKAQK----SG-VYNVGYSQARSYNEIVSILKEHLG  273 (362)
T ss_dssp             CEEECEEHHHHHHHHHHHTTCSS----CE-EEEESCSCEEEHHHHHHHHHHHHC
T ss_pred             eEEccEEHHHHHHHHHHHHhcCC----CC-EEEeCCCCCccHHHHHHHHHHHcC
Confidence            66789999999999999987653    24 999999999999999999999999

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.98  E-value=1.4e-30  Score=227.73  Aligned_cols=260  Identities=15%  Similarity=0.101  Sum_probs=184.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecCCCHHHHHHHHh--ccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDLLNPLDIKRKLT--LLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~~~--~~~~V   96 (303)
                      ++|+|||||||||||++++++|+ +.|++|++++|+......        ...+++++.+|++|.+++.++++  ++|.|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELL-AHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHH-HCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence            35799999999999999999999 689999999997655321        13478899999999999999998  67789


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      +|+|+..........+.+.++.|+.++.++++++++..  ..+++++|+..+|+..       ...+++|+.+..|.++ 
T Consensus        83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~SS~~~~g~~-------~~~~~~e~~~~~~~~~-  152 (341)
T 3enk_A           83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA--VKRIVFSSSATVYGVP-------ERSPIDETFPLSATNP-  152 (341)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCEEEEEEEGGGBCSC-------SSSSBCTTSCCBCSSH-
T ss_pred             EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCC--CCEEEEEecceEecCC-------CCCCCCCCCCCCCCCh-
Confidence            99987644333333444688999999999999998763  3455566665577543       2456888888776666 


Q ss_pred             chHHHHHHHHHH-----h-cCC-cceEEecCCceeecCCCCcc-----chhhH-HHHHHHHhhhCCCceeeCCch---hh
Q 042242          177 FYYVLEDLLKEK-----L-AGK-VAWSVHRPGLLLGSSHRSLY-----NFLGC-LCVYGAVCKHLNLPFVFGGTR---EI  240 (303)
Q Consensus       177 ~~y~~~k~~~e~-----~-~~~-~~~~ilRp~~v~G~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~g~~---~~  240 (303)
                        |+.+|...|.     . ... ++++++||+++||++.....     ..... +........+...++...|..   ..
T Consensus       153 --Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  230 (341)
T 3enk_A          153 --YGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD  230 (341)
T ss_dssp             --HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTT
T ss_pred             --hHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCC
Confidence              9988887772     1 222 89999999999997542100     00011 111112222223444443310   00


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      . .+..++++++|+|++++.++..+... ..+++||+++++.+|+.|+++.+++.+|++.+
T Consensus       231 g-~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  289 (341)
T 3enk_A          231 G-TGVRDYIHVVDLARGHIAALDALERR-DASLTVNLGTGRGYSVLEVVRAFEKASGRAVP  289 (341)
T ss_dssp             S-SCEECEEEHHHHHHHHHHHHHHHHHH-TSCEEEEESCSCCEEHHHHHHHHHHHHCSCCC
T ss_pred             C-CeeEeeEEHHHHHHHHHHHHHhhhcC-CcceEEEeCCCCceeHHHHHHHHHHHhCCCcc
Confidence            1 56678999999999999988763110 22489999999999999999999999998765

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.97  E-value=1.9e-30  Score=228.02  Aligned_cols=251  Identities=17%  Similarity=0.124  Sum_probs=183.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--cc----------CCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQ----------SSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~----------~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      ++++|||||||||||++|+++|+ +.|++|++++|++....  ..          ..+++++.+|+.|.+++.++++++|
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  104 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLL-KLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD  104 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             cCCeEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence            45799999999999999999999 57999999999764211  10          2578999999999999999999999


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS  174 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~  174 (303)
                      .|+|+++......+..++.+.+++|+.++.+++++|++.  ...+++++|+..+|+...       ..+++|+++..|..
T Consensus       105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~SS~~~~~~~~-------~~~~~E~~~~~~~~  175 (352)
T 1sb8_A          105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA--KVQSFTYAASSSTYGDHP-------GLPKVEDTIGKPLS  175 (352)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT--TCSEEEEEEEGGGGTTCC-------CSSBCTTCCCCCCS
T ss_pred             EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccHHhcCCCC-------CCCCCCCCCCCCCC
Confidence            999998754322222344458899999999999999876  345666666666775431       34678888766666


Q ss_pred             ccchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCcc---chhhHHHHHHHHhhhCCCceeeCCchhhhhhh
Q 042242          175 NNFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLY---NFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       175 ~~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (303)
                      +   |+.+|...|.     .  .+ ++++++||+.|||++.....   .+...+  ...+.+  +.++.+.|..    ..
T Consensus       176 ~---Y~~sK~~~e~~~~~~~~~~g-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~g~g----~~  243 (352)
T 1sb8_A          176 P---YAVTKYVNELYADVFSRCYG-FSTIGLRYFNVFGRRQDPNGAYAAVIPKW--TSSMIQ--GDDVYINGDG----ET  243 (352)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHC-CCCEEEEECCEECTTCCCCSTTCCHHHHH--HHHHHH--TCCCEEESSS----CC
T ss_pred             h---hHHHHHHHHHHHHHHHHHcC-CCEEEEEECceeCcCCCCCcchhhHHHHH--HHHHHC--CCCcEEeCCC----Cc
Confidence            6   8888777762     1  14 89999999999997543211   111111  111222  4444444433    45


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHh---cccCC
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKF---GVKVP  301 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~---g~~~~  301 (303)
                      ..++++++|+|++++.++..+..  ..+++||+++++.+|+.|+++.+++.+   |++.+
T Consensus       244 ~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~  301 (352)
T 1sb8_A          244 SRDFCYIENTVQANLLAATAGLD--ARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYH  301 (352)
T ss_dssp             EECCEEHHHHHHHHHHHHTCCGG--GCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCC
T ss_pred             eEeeEEHHHHHHHHHHHHhcccc--CCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            66789999999999988876322  224899999999999999999999999   87754

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.97  E-value=3.7e-30  Score=224.03  Aligned_cols=258  Identities=15%  Similarity=0.100  Sum_probs=182.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~~~  105 (303)
                      |+|||||||||||++|+++|+ +.|++|++++|...... ....+++++.+|+.|.+++.++++  ++|.|+|+++....
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~   80 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLV-DEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLV   80 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCH
T ss_pred             CEEEEECCCcHHHHHHHHHHH-hCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCc
Confidence            689999999999999999999 67999999999765422 122378899999999999999998  77889999875432


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLL  185 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~  185 (303)
                      ..+..++.+.+++|+.++.+++++|++.  +..+++++|+..+|+..       ...+++|+++..|..+   |+.+|..
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~Ss~~~~~~~-------~~~~~~E~~~~~~~~~---Y~~sK~~  148 (330)
T 2c20_A           81 GVSMEKPLQYYNNNVYGALCLLEVMDEF--KVDKFIFSSTAATYGEV-------DVDLITEETMTNPTNT---YGETKLA  148 (330)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECCGGGGCSC-------SSSSBCTTSCCCCSSH---HHHHHHH
T ss_pred             cccccCHHHHHHHHhHHHHHHHHHHHHc--CCCEEEEeCCceeeCCC-------CCCCCCcCCCCCCCCh---HHHHHHH
Confidence            2223344558899999999999999876  34567777776677543       2456888887765566   8888777


Q ss_pred             HHH-----hcCC-cceEEecCCceeecCCCCcc-----chhhHHHHHHHHhhhCCCceeeCCchh---hhhhhcccCccH
Q 042242          186 KEK-----LAGK-VAWSVHRPGLLLGSSHRSLY-----NFLGCLCVYGAVCKHLNLPFVFGGTRE---IWEEYCLDGSDS  251 (303)
Q Consensus       186 ~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~  251 (303)
                      .|.     .... ++++++||+.+||++.....     .....+..+.......+.++.+.|...   .. ....+++++
T Consensus       149 ~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~v~v  227 (330)
T 2c20_A          149 IEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDG-TCIRDYIHV  227 (330)
T ss_dssp             HHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSS-SCEECEEEH
T ss_pred             HHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCC-ceeEeeEeH
Confidence            762     2222 99999999999997532100     000011111111222233444433100   01 456788999


Q ss_pred             HHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          252 RLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       252 ~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +|+|++++.++..+... ..+++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       228 ~Dva~a~~~~~~~~~~~-~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  276 (330)
T 2c20_A          228 EDLVAAHFLGLKDLQNG-GESDFYNLGNGNGFSVKEIVDAVREVTNHEIP  276 (330)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCEEEECCCTTCBCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHhccccC-CCCCeEEeCCCCCccHHHHHHHHHHHhCCCCc
Confidence            99999999988764321 11379999999999999999999999998765

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.97  E-value=9.2e-31  Score=223.52  Aligned_cols=227  Identities=15%  Similarity=0.070  Sum_probs=173.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~~  104 (303)
                      |+++|||||||||||+++++.|+ +.|++|++++|..              +|+.|.+.+.++++  ++|.|+|+++...
T Consensus         4 M~m~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~--------------~D~~d~~~~~~~~~~~~~d~vi~~a~~~~   68 (287)
T 3sc6_A            4 MKERVIITGANGQLGKQLQEELN-PEEYDIYPFDKKL--------------LDITNISQVQQVVQEIRPHIIIHCAAYTK   68 (287)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHSC-TTTEEEEEECTTT--------------SCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             ceeEEEEECCCCHHHHHHHHHHH-hCCCEEEEecccc--------------cCCCCHHHHHHHHHhcCCCEEEECCcccC
Confidence            43499999999999999999999 6799999999932              79999999999998  4788999987654


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ......++.+.+++|+.++.+++++|++.+.   +++++|+..+|+..       ...+++|+++..|.++   |+.+|.
T Consensus        69 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~v~~SS~~vy~~~-------~~~~~~E~~~~~p~~~---Y~~sK~  135 (287)
T 3sc6_A           69 VDQAEKERDLAYVINAIGARNVAVASQLVGA---KLVYISTDYVFQGD-------RPEGYDEFHNPAPINI---YGASKY  135 (287)
T ss_dssp             HHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC---EEEEEEEGGGSCCC-------CSSCBCTTSCCCCCSH---HHHHHH
T ss_pred             hHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEchhhhcCCC-------CCCCCCCCCCCCCCCH---HHHHHH
Confidence            3332234455899999999999999998754   35555555577544       2467889988777777   999998


Q ss_pred             HHHHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          185 LKEKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       185 ~~e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      ..|..   .. .+++++||+.+||++...   +...+  ...+.  .+.++...|      ....++++++|+|++++.+
T Consensus       136 ~~E~~~~~~~-~~~~ilR~~~v~G~~~~~---~~~~~--~~~~~--~~~~~~~~~------~~~~~~i~v~Dva~~~~~~  201 (287)
T 3sc6_A          136 AGEQFVKELH-NKYFIVRTSWLYGKYGNN---FVKTM--IRLGK--EREEISVVA------DQIGSPTYVADLNVMINKL  201 (287)
T ss_dssp             HHHHHHHHHC-SSEEEEEECSEECSSSCC---HHHHH--HHHHT--TCSEEEEEC------SCEECCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCcEEEeeeeecCCCCCc---HHHHH--HHHHH--cCCCeEeec------CcccCceEHHHHHHHHHHH
Confidence            88843   23 678999999999964322   11111  11111  245566666      3456789999999999999


Q ss_pred             hcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          262 ATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +..+.  +   ++||+++++.+|+.|+++.+++.+|++.
T Consensus       202 ~~~~~--~---~~~~i~~~~~~s~~e~~~~i~~~~g~~~  235 (287)
T 3sc6_A          202 IHTSL--Y---GTYHVSNTGSCSWFEFAKKIFSYANMKV  235 (287)
T ss_dssp             HTSCC--C---EEEECCCBSCEEHHHHHHHHHHHHTCCC
T ss_pred             HhCCC--C---CeEEEcCCCcccHHHHHHHHHHHcCCCc
Confidence            88775  3   7999999999999999999999999764

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.97  E-value=5.7e-30  Score=223.37  Aligned_cols=250  Identities=14%  Similarity=0.093  Sum_probs=178.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcc--c-cc----cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEI--T-AI----QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~--~-~~----~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +++|||||||||||++|+++|++.+ +++|++++|....  . ..    ...+++++.+|+.|.+++.+++.++|.|+|+
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            4689999999999999999999433 4899999997521  1 11    1347889999999999999999999999999


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchH
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYY  179 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y  179 (303)
                      |+......+..+..+.+++|+.++.+++++|.+.. ...+++++|+..+|+...       ..+++|+++..|..+   |
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~vyg~~~-------~~~~~E~~~~~~~~~---Y  151 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRREN-PEVRFVHVSTDEVYGDIL-------KGSFTENDRLMPSSP---Y  151 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHC-TTSEEEEEEEGGGGCCCS-------SSCBCTTBCCCCCSH---H
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEeccHHHHCCCC-------CCCcCCCCCCCCCCc---c
Confidence            87643222223334588999999999999999863 124666666666775432       346788877665666   8


Q ss_pred             HHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          180 VLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       180 ~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      +.+|...|.     .... ++++++||+.|||++... ..+...+  ...+.+  +.++.+.+..    .+..++++++|
T Consensus       152 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~----~~~~~~i~v~D  222 (336)
T 2hun_A          152 SATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFP-EKLIPKT--IIRASL--GLKIPIYGTG----KNVRDWLYVED  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT-TSHHHHH--HHHHHT--TCCEEEETC-------CEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc-CchHHHH--HHHHHc--CCCceEeCCC----CceeeeEEHHH
Confidence            888877762     2222 899999999999975421 1111111  111222  3444443333    45567889999


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +|++++.++..+. .   |++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       223 va~~~~~~~~~~~-~---g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~  266 (336)
T 2hun_A          223 HVRAIELVLLKGE-S---REIYNISAGEEKTNLEVVKIILRLMGKGEE  266 (336)
T ss_dssp             HHHHHHHHHHHCC-T---TCEEEECCSCEECHHHHHHHHHHHTTCCST
T ss_pred             HHHHHHHHHhCCC-C---CCEEEeCCCCcccHHHHHHHHHHHhCCCcc
Confidence            9999998886542 2   489999999999999999999999998754

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.97  E-value=8.7e-30  Score=223.30  Aligned_cols=257  Identities=16%  Similarity=0.106  Sum_probs=181.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc------cc-----c---cCCCeEEEEecCCCHHHHHHHHh-
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI------TA-----I---QSSSYCFISCDLLNPLDIKRKLT-   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~------~~-----~---~~~~~~~~~~D~~~~~~l~~~~~-   91 (303)
                      |+|+|||||||||||++|+++|+ ..|++|++++|....      ..     .   ...+++++.+|+.|.+++.++++ 
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELL-EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHH-HTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh
Confidence            56899999999999999999999 579999999986532      10     0   13468899999999999999998 


Q ss_pred             -ccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           92 -LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        92 -~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                       ++|.|+|+++.........++.+.+++|+.++.++++++++..  ..+++++|+..+|+..       ...+++|+++.
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~SS~~~~g~~-------~~~~~~E~~~~  150 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG--VKNLVFSSSATVYGNP-------QYLPLDEAHPT  150 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCEEEEEEEGGGGCSC-------SSSSBCTTSCC
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECcHHHhCCC-------CCCCcCCCCCC
Confidence             6778999977543222233444588999999999999998763  3456666666677543       24568888876


Q ss_pred             CC-CCccchHHHHHHHHHH-----h-cCC-cceEEecCCceeecCCCC---------ccchhhHHHHHHHHhhhCCCcee
Q 042242          171 VS-KSNNFYYVLEDLLKEK-----L-AGK-VAWSVHRPGLLLGSSHRS---------LYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       171 ~p-~~~~~~y~~~k~~~e~-----~-~~~-~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                      .| ..+   |+.+|...|.     . .+. ++++++||+++||+.+..         ..++..   .+.....+.+.++.
T Consensus       151 ~p~~~~---Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~  224 (348)
T 1ek6_A          151 GGCTNP---YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMP---YVSQVAIGRREALN  224 (348)
T ss_dssp             CCCSSH---HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHH---HHHHHHHTSSSCEE
T ss_pred             CCCCCc---hHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHH---HHHHHHHhcCCCeE
Confidence            65 455   8888777662     2 223 899999999999974310         011111   11222222344444


Q ss_pred             eCCch---hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          234 FGGTR---EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       234 ~~g~~---~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +.|..   ... ....++++++|+|++++.++..+... .++++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       225 ~~g~~~~~~~g-~~~~~~i~v~Dva~a~~~~~~~~~~~-~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  293 (348)
T 1ek6_A          225 VFGNDYDTEDG-TGVRDYIHVVDLAKGHIAALRKLKEQ-CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIP  293 (348)
T ss_dssp             EECSCSSSSSS-SCEECEEEHHHHHHHHHHHHHHHTTT-CCEEEEEECCSCCEEHHHHHHHHHHHHCSCCC
T ss_pred             EeCCcccCCCC-ceEEeeEEHHHHHHHHHHHHhccccc-CCceEEEeCCCCCccHHHHHHHHHHHhCCCCc
Confidence            43310   001 46678999999999999988765311 11279999999999999999999999998764

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.97  E-value=1.1e-29  Score=220.09  Aligned_cols=249  Identities=17%  Similarity=0.156  Sum_probs=179.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~~~~  104 (303)
                      +.++|||||||||||++|+++|+ +.|++|++++|++.. ..  .+++++.+|+.|.+++.+++++  +|.|+|+|+...
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~-~~--l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~   86 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLT-EQNVEVFGTSRNNEA-KL--PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSS   86 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCTTC-CC--TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCC
T ss_pred             CcceEEEECCCChHHHHHHHHHH-HCCCEEEEEecCCcc-cc--ceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccc
Confidence            35799999999999999999999 689999999998765 21  2788999999999999999987  788999987543


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ...+..+..+.+++|+.++.+++++|+.. ....+++++|+..+|+....     ...+++|+++..|..+   |+.+|.
T Consensus        87 ~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~v~g~~~~-----~~~~~~E~~~~~~~~~---Y~~sK~  157 (321)
T 2pk3_A           87 VKDSWLNKKGTFSTNVFGTLHVLDAVRDS-NLDCRILTIGSSEEYGMILP-----EESPVSEENQLRPMSP---YGVSKA  157 (321)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEEEEGGGTBSCCG-----GGCSBCTTSCCBCCSH---HHHHHH
T ss_pred             hhhhhhcHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEccHHhcCCCCC-----CCCCCCCCCCCCCCCc---cHHHHH
Confidence            22222234458999999999999999764 23456666666667754310     1456888887766666   888887


Q ss_pred             HHHH-----hc--CCcceEEecCCceeecCCCCccchhhHHHHHHHHhh-hCC--CceeeCCchhhhhhhcccCccHHHH
Q 042242          185 LKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCK-HLN--LPFVFGGTREIWEEYCLDGSDSRLV  254 (303)
Q Consensus       185 ~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~g~~~~~~~~~~~~~~~~d~  254 (303)
                      ..|.     ..  + ++++++||+++||++.... .....+.  ..+.+ ..+  .++...+..    ....++++++|+
T Consensus       158 ~~E~~~~~~~~~~g-i~~~ilrp~~v~g~~~~~~-~~~~~~~--~~~~~~~~g~~~~~~~~~~~----~~~~~~v~v~Dv  229 (321)
T 2pk3_A          158 SVGMLARQYVKAYG-MDIIHTRTFNHIGPGQSLG-FVTQDFA--KQIVDIEMEKQEPIIKVGNL----EAVRDFTDVRDI  229 (321)
T ss_dssp             HHHHHHHHHHHHHC-CEEEEEEECEEECTTCCTT-SHHHHHH--HHHHHHHTTSSCSEEEESCS----SCEEEEEEHHHH
T ss_pred             HHHHHHHHHHHHcC-CCEEEEEeCcccCcCCCCC-chHHHHH--HHHHHHhcCCCCCeEEeCCC----CcEEeeEEHHHH
Confidence            7762     22  4 8999999999999754321 1111111  11111 013  343333332    455678899999


Q ss_pred             HHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          255 AEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       255 a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      |++++.++..+ ..   |++||+++++.+|+.|+++.+.+.+|.+.
T Consensus       230 a~a~~~~~~~~-~~---g~~~~i~~~~~~s~~e~~~~i~~~~g~~~  271 (321)
T 2pk3_A          230 VQAYWLLSQYG-KT---GDVYNVCSGIGTRIQDVLDLLLAMANVKI  271 (321)
T ss_dssp             HHHHHHHHHHC-CT---TCEEEESCSCEEEHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHhCC-CC---CCeEEeCCCCCeeHHHHHHHHHHHhCCCC
Confidence            99999988765 22   37999999999999999999999999764

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.97  E-value=1.5e-29  Score=222.67  Aligned_cols=251  Identities=16%  Similarity=0.053  Sum_probs=181.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      ++++|||||||||||++|+++|+ ..|++|++++|++.....      ...+++++.+|+.|.+++.+++++  +|.|+|
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   86 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQ-TMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   86 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-hCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence            45799999999999999999999 689999999998754321      134789999999999999999987  678999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      +++......+..+..+.+++|+.++.+++++|.+.. ...+++++|+..+|+....      ..++.|+++..|..+   
T Consensus        87 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~vyg~~~~------~~~~~E~~~~~~~~~---  156 (357)
T 1rkx_A           87 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG-GVKAVVNITSDKCYDNKEW------IWGYRENEAMGGYDP---  156 (357)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC-CCCEEEEECCGGGBCCCCS------SSCBCTTSCBCCSSH---
T ss_pred             CCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEecCHHHhCCCCc------CCCCCCCCCCCCCCc---
Confidence            987533322333444588999999999999998752 3567777777778865421      235677776655566   


Q ss_pred             HHHHHHHHHH-----h-----------cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          179 YVLEDLLKEK-----L-----------AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       179 y~~~k~~~e~-----~-----------~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      |+.+|...|.     .           .+ ++++++||+.+||++......++..+.  ..+.+  +.++.+++.     
T Consensus       157 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~g-i~~~~lrp~~v~G~~~~~~~~~~~~~~--~~~~~--g~~~~~~~~-----  226 (357)
T 1rkx_A          157 YSNSKGCAELVTSSYRNSFFNPANYGQHG-TAVATVRAGNVIGGGDWALDRIVPDIL--RAFEQ--SQPVIIRNP-----  226 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCGGGHHHHC-CEEEEEECCCEECTTCCCSSCHHHHHH--HHHHT--TCCEECSCT-----
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhccccCC-ceEEEEeeceeeCCCCCccccHHHHHH--HHHhc--CCCEEECCC-----
Confidence            8888877762     1           15 899999999999975432112222211  11222  445444431     


Q ss_pred             hhcccCccHHHHHHHHHHHhcC----cCCcCCCCceEEeecC--CCccHHhhHHHHHHHhcccCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATN----DDISSTKGQAFNAING--PRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~----~~~~~~~g~~yni~~~--~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ....++++++|+|++++.++..    +...   +++||++++  +.+|+.|+++.+++.+|.+.+
T Consensus       227 ~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~---~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~  288 (357)
T 1rkx_A          227 HAIRPWQHVLEPLSGYLLLAQKLYTDGAEY---AEGWNFGPNDADATPVKNIVEQMVKYWGEGAS  288 (357)
T ss_dssp             TCEECCEETHHHHHHHHHHHHHHHHTCGGG---CSEEECCCCGGGCEEHHHHHHHHHHHHCTTCC
T ss_pred             CCeeccEeHHHHHHHHHHHHHhhhhcCCCC---CceEEECCCCCCcccHHHHHHHHHHHhCCCCc
Confidence            4556789999999999988764    1222   379999974  689999999999999998654

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.97  E-value=1.2e-29  Score=221.31  Aligned_cols=252  Identities=13%  Similarity=0.070  Sum_probs=178.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c-cCCCeEEEEecCCCHHHHHHHHhcc--Cc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I-QSSSYCFISCDLLNPLDIKRKLTLL--ED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~-~~~~~~~~~~D~~~~~~l~~~~~~~--~~   95 (303)
                      ..++++|||||||||||++|+++|+ +.|++|++++|++....      . ...+++++.+|+.|.+++.++++++  |.
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   89 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLL-EKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQE   89 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cccCCeEEEECCCChHHHHHHHHHH-HCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence            4467899999999999999999999 57999999999875421      0 1246889999999999999999874  77


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |+|+++......+..++.+.+++|+.++.+++++|++... ..+++++|+..+|+..       ...+++|+++..|.++
T Consensus        90 Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~~v~~SS~~v~g~~-------~~~~~~E~~~~~p~~~  161 (335)
T 1rpn_A           90 VYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP-ETRFYQASTSEMFGLI-------QAERQDENTPFYPRSP  161 (335)
T ss_dssp             EEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-TSEEEEEEEGGGGCSC-------SSSSBCTTSCCCCCSH
T ss_pred             EEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeCHHHhCCC-------CCCCCCcccCCCCCCh
Confidence            9999875433222223445889999999999999987631 1455666665577543       1346788887766666


Q ss_pred             cchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhccc
Q 042242          176 NFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCLD  247 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~  247 (303)
                         |+.+|...|.     ..  + ++++++||+.+||++..... ....+..+.. +..+ ..+....|..    ....+
T Consensus       162 ---Y~~sK~~~e~~~~~~~~~~~-~~~~i~r~~~v~Gp~~~~~~-~~~~~~~~~~~~~~g-~~~~~~~g~g----~~~~~  231 (335)
T 1rpn_A          162 ---YGVAKLYGHWITVNYRESFG-LHASSGILFNHESPLRGIEF-VTRKVTDAVARIKLG-KQQELRLGNV----DAKRD  231 (335)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHTT-SCSCEEESCT----TCEEE
T ss_pred             ---hHHHHHHHHHHHHHHHHHcC-CcEEEEeeCcccCCCCCCCc-chHHHHHHHHHHHcC-CCceEEeCCC----cceec
Confidence               8888877762     22  4 89999999999997543211 0011111111 2221 1222223332    45667


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +++++|+|++++.++..+.  +   ++||+++++.+|+.|+++.+++.+|.+.
T Consensus       232 ~i~v~Dva~a~~~~~~~~~--~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~  279 (335)
T 1rpn_A          232 WGFAGDYVEAMWLMLQQDK--A---DDYVVATGVTTTVRDMCQIAFEHVGLDY  279 (335)
T ss_dssp             CEEHHHHHHHHHHHHHSSS--C---CCEEECCSCEEEHHHHHHHHHHTTTCCG
T ss_pred             eEEHHHHHHHHHHHHhcCC--C---CEEEEeCCCCccHHHHHHHHHHHhCCCc
Confidence            8999999999999987753  2   6899999999999999999999999863

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.97  E-value=1.6e-29  Score=218.23  Aligned_cols=247  Identities=18%  Similarity=0.166  Sum_probs=176.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~~~  105 (303)
                      |+||||||+||||++++++|+ +.|++|++++|...... ....+++++.+|++|.+++.++++  ++|.|+|+++....
T Consensus         1 m~vlVTGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~   79 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLL-ARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASV   79 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCH
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCc
Confidence            379999999999999999999 68999999998543321 122467889999999999999998  67789999765432


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecc-cccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM-KHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~-~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ..+..++.+.+++|+.++.+++++|++..  ..+++++|+. .+|+...      ...+.+|+++..|..+   |+.+|.
T Consensus        80 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iv~~SS~~~~~g~~~------~~~~~~E~~~~~~~~~---Y~~sK~  148 (311)
T 2p5y_A           80 KVSVEDPVLDFEVNLLGGLNLLEACRQYG--VEKLVFASTGGAIYGEVP------EGERAEETWPPRPKSP---YAASKA  148 (311)
T ss_dssp             HHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CSEEEEEEEHHHHHCCCC------TTCCBCTTSCCCCCSH---HHHHHH
T ss_pred             hhhhhCHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEeCCChhhcCCCC------CCCCcCCCCCCCCCCh---HHHHHH
Confidence            22233444588999999999999998763  3455555554 5675411      1346778777665566   888887


Q ss_pred             HHHH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeC-----CchhhhhhhcccCccH
Q 042242          185 LKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFG-----GTREIWEEYCLDGSDS  251 (303)
Q Consensus       185 ~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~  251 (303)
                      ..|.     .  .+ ++++++||+++||++...... ...+..+.. +.+  +.++...     |..    ....+++++
T Consensus       149 ~~e~~~~~~~~~~~-~~~~~lrp~~v~Gp~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g----~~~~~~i~v  220 (311)
T 2p5y_A          149 AFEHYLSVYGQSYG-LKWVSLRYGNVYGPRQDPHGE-AGVVAIFAERVLK--GLPVTLYARKTPGDE----GCVRDYVYV  220 (311)
T ss_dssp             HHHHHHHHHHHHHC-CCEEEEEECEEECTTCCSSST-THHHHHHHHHHHH--TCCEEEECSSSTTSC----CCEECEEEH
T ss_pred             HHHHHHHHHHHHcC-CCEEEEeeccccCcCCCCCCc-CcHHHHHHHHHHc--CCCcEEEecccCCCC----CeEEeeEEH
Confidence            7762     1  24 899999999999975432210 011111111 222  3443333     332    455678999


Q ss_pred             HHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          252 RLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       252 ~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +|+|++++.++..+   +   ++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       221 ~Dva~a~~~~~~~~---~---~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  264 (311)
T 2p5y_A          221 GDVAEAHALALFSL---E---GIYNVGTGEGHTTREVLMAVAEAAGKAPE  264 (311)
T ss_dssp             HHHHHHHHHHHHHC---C---EEEEESCSCCEEHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHhCC---C---CEEEeCCCCCccHHHHHHHHHHHhCCCCC
Confidence            99999999888654   3   79999999999999999999999998654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.97  E-value=3.6e-29  Score=222.00  Aligned_cols=255  Identities=15%  Similarity=0.050  Sum_probs=179.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      ++|+|||||||||||++|+++|+ +.|++|++++|++.... ....+++++.+|+.|.+++.++++++|.|+|+++....
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~  106 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLK-HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGG  106 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHH-HCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECceecCc
Confidence            45799999999999999999999 57999999999876532 22357889999999999999999999999999775322


Q ss_pred             cCC-hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC--CCCCCCccchHHHH
Q 042242          106 SQF-ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC--PRVSKSNNFYYVLE  182 (303)
Q Consensus       106 ~~~-~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~--~~~p~~~~~~y~~~  182 (303)
                      ... ..++.+.+++|+.++.+++++|++..  ..+++++|+..+|+......  ....++.|++  +..|..+   |+.+
T Consensus       107 ~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~--~~~~V~~SS~~v~~~~~~~~--~~~~~~~E~~~~~~~~~~~---Y~~s  179 (379)
T 2c5a_A          107 MGFIQSNHSVIMYNNTMISFNMIEAARING--IKRFFYASSACIYPEFKQLE--TTNVSLKESDAWPAEPQDA---FGLE  179 (379)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEEEGGGSCGGGSSS--SSSCEECGGGGSSBCCSSH---HHHH
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEEeehheeCCCCCCC--ccCCCcCcccCCCCCCCCh---hHHH
Confidence            111 22334588999999999999998763  34666666656775432100  0123466665  3333444   8888


Q ss_pred             HHHHHH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHH-HHhhhCCCc-eeeCCchhhhhhhcccCccHHH
Q 042242          183 DLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYG-AVCKHLNLP-FVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       183 k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      |...|.     .  .+ ++++++||+.+||+...........+..+. .+.+  +.+ +...+..    ....++++++|
T Consensus       180 K~~~E~~~~~~~~~~g-i~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g----~~~~~~i~v~D  252 (379)
T 2c5a_A          180 KLATEELCKHYNKDFG-IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQT--STDRFEMWGDG----LQTRSFTFIDE  252 (379)
T ss_dssp             HHHHHHHHHHHHHHHC-CEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHH--CSSCEEEESCS----CCEECCEEHHH
T ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEeCceeCcCCCcccccccHHHHHHHHHHh--CCCceEEeCCC----CeeEEEEEHHH
Confidence            777762     1  24 999999999999975432111100111111 1222  333 4434432    45568999999


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +|++++.++..+  .   +++||+++++.+|+.|+++.+++.+|++.+
T Consensus       253 va~ai~~~l~~~--~---~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  295 (379)
T 2c5a_A          253 CVEGVLRLTKSD--F---REPVNIGSDEMVSMNEMAEMVLSFEEKKLP  295 (379)
T ss_dssp             HHHHHHHHHHSS--C---CSCEEECCCCCEEHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHhhcc--C---CCeEEeCCCCccCHHHHHHHHHHHhCCCCc
Confidence            999999988765  2   268999999999999999999999998754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.97  E-value=1.4e-30  Score=222.37  Aligned_cols=233  Identities=16%  Similarity=0.132  Sum_probs=177.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-cCceeEEeecccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-LEDVTHIFWVTWA  105 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-~~~V~~~~~~~~~  105 (303)
                      ++++||||| +||||++|+++|+ +.|++|++++|++.+.   ..+++++.+|+.|.+++.+++++ +|.|+|+++... 
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~-~~g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~-   75 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLT-AQGHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASE-   75 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHH-HTTCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHH-
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCC-
Confidence            347899999 5999999999999 6899999999987653   46889999999999999999988 888999976521 


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLL  185 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~  185 (303)
                          .++...+++|+.++.+++++|++.  ...+++++|+..+|+..       ...+++|+++..|.++   |+.+|..
T Consensus        76 ----~~~~~~~~~n~~~~~~ll~a~~~~--~~~~~v~~SS~~vyg~~-------~~~~~~E~~~~~p~~~---Y~~sK~~  139 (286)
T 3gpi_A           76 ----YSDEHYRLSYVEGLRNTLSALEGA--PLQHVFFVSSTGVYGQE-------VEEWLDEDTPPIAKDF---SGKRMLE  139 (286)
T ss_dssp             ----HC-----CCSHHHHHHHHHHTTTS--CCCEEEEEEEGGGCCCC-------CSSEECTTSCCCCCSH---HHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHHHHHHHhhC--CCCEEEEEcccEEEcCC-------CCCCCCCCCCCCCCCh---hhHHHHH
Confidence                223347889999999999999865  34566666666677654       2456788888776777   9999999


Q ss_pred             HHHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcC
Q 042242          186 KEKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN  264 (303)
Q Consensus       186 ~e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~  264 (303)
                      .|.. .. ++++++||+.+||++..   .++..      +.   ..+.  .+..    ....++++++|+|++++.++..
T Consensus       140 ~E~~-~~~~~~~ilR~~~v~G~~~~---~~~~~------~~---~~~~--~~~~----~~~~~~i~v~Dva~~~~~~~~~  200 (286)
T 3gpi_A          140 AEAL-LAAYSSTILRFSGIYGPGRL---RMIRQ------AQ---TPEQ--WPAR----NAWTNRIHRDDGAAFIAYLIQQ  200 (286)
T ss_dssp             HHHH-GGGSSEEEEEECEEEBTTBC---HHHHH------TT---CGGG--SCSS----BCEECEEEHHHHHHHHHHHHHH
T ss_pred             HHHH-HhcCCeEEEecccccCCCch---hHHHH------HH---hccc--CCCc----CceeEEEEHHHHHHHHHHHHhh
Confidence            9876 44 89999999999996432   11111      11   1111  1222    5567789999999999999887


Q ss_pred             cCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          265 DDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       265 ~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +... ..+++||+++++.+|+.|+++.+++.+|++.+
T Consensus       201 ~~~~-~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~  236 (286)
T 3gpi_A          201 RSHA-VPERLYIVTDNQPLPVHDLLRWLADRQGIAYP  236 (286)
T ss_dssp             HTTS-CCCSEEEECCSCCEEHHHHHHHHHHHTTCCCC
T ss_pred             hccC-CCCceEEEeCCCCCCHHHHHHHHHHHcCCCCC
Confidence            5210 22489999999999999999999999998876

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.97  E-value=4.8e-30  Score=221.95  Aligned_cols=240  Identities=15%  Similarity=0.089  Sum_probs=152.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~~~~  104 (303)
                      |+|+|||||||||||++|+++|+ ..|++|++++|+...     ++  ++.+|+.|.+++.+++++  +|.|+|+++...
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~-----~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~   72 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQ-QNNWHAVGCGFRRAR-----PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCAAERR   72 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-TTTCEEEEEC-------------------------CHHHHHHHCCSEEEECC----
T ss_pred             CCCeEEEECCCcHHHHHHHHHHH-hCCCeEEEEccCCCC-----CC--eEEecCCCHHHHHHHHHhhCCCEEEECCcccC
Confidence            56899999999999999999999 689999999987643     22  778999999999999986  678999987644


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ...+..++.+.+++|+.++.++++++.+.+.   +++++|+..+|+..        ..+++|+++..|..+   |+.+|.
T Consensus        73 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~---~~v~~SS~~v~~~~--------~~~~~E~~~~~~~~~---Y~~sK~  138 (315)
T 2ydy_A           73 PDVVENQPDAASQLNVDASGNLAKEAAAVGA---FLIYISSDYVFDGT--------NPPYREEDIPAPLNL---YGKTKL  138 (315)
T ss_dssp             ---------------CHHHHHHHHHHHHHTC---EEEEEEEGGGSCSS--------SCSBCTTSCCCCCSH---HHHHHH
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEchHHHcCCC--------CCCCCCCCCCCCcCH---HHHHHH
Confidence            3333344455889999999999999998643   55666665577542        446888887666666   999888


Q ss_pred             HHHHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          185 LKEKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       185 ~~e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      ..|..   .. ++++++||+.|||+......++...+.  ..+. ..+.++...+      ....++++++|+|++++.+
T Consensus       139 ~~e~~~~~~~-~~~~~lR~~~v~G~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~------~~~~~~i~v~Dva~a~~~~  208 (315)
T 2ydy_A          139 DGEKAVLENN-LGAAVLRIPILYGEVEKLEESAVTVMF--DKVQ-FSNKSANMDH------WQQRFPTHVKDVATVCRQL  208 (315)
T ss_dssp             HHHHHHHHHC-TTCEEEEECSEECSCSSGGGSTTGGGH--HHHH-CCSSCEEEEC------SSBBCCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCeEEEeeeeeeCCCCcccccHHHHHH--HHHH-hcCCCeeecc------CceECcEEHHHHHHHHHHH
Confidence            88742   23 788999999999975431112222211  1121 0244444444      4456789999999999988


Q ss_pred             hcCc---CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          262 ATND---DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       262 ~~~~---~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +..+   ...   +++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       209 ~~~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  248 (315)
T 2ydy_A          209 AEKRMLDPSI---KGTFHWSGNEQMTKYEMACAIADAFNLPSS  248 (315)
T ss_dssp             HHHHHTCTTC---CEEEECCCSCCBCHHHHHHHHHHHTTCCCT
T ss_pred             HHhhccccCC---CCeEEEcCCCcccHHHHHHHHHHHhCCChh
Confidence            8654   222   379999999999999999999999998753

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.97  E-value=1.7e-29  Score=220.54  Aligned_cols=245  Identities=13%  Similarity=0.126  Sum_probs=178.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcC---C---CeEEEEecCCcc---ccc----cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTA---N---WKVYGIARKPEI---TAI----QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~---g---~~V~~~~r~~~~---~~~----~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      |+|||||||||||++|+++|+ +.   |   ++|++++|....   ...    ...+++++.+|+.|.+++.+++.++|.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~-~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   79 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLL-AGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA   79 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred             CeEEEECCccHHHHHHHHHHH-hhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCE
Confidence            479999999999999999999 44   7   999999996521   111    125789999999999999999999999


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |+|+++......+..++.+.+++|+.++.+++++|.+..  ..+++++|+..+|+...       ..+++|+++..|..+
T Consensus        80 Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~--~~~~v~~SS~~vyg~~~-------~~~~~E~~~~~~~~~  150 (337)
T 1r6d_A           80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG--VGRVVHVSTNQVYGSID-------SGSWTESSPLEPNSP  150 (337)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT--CCEEEEEEEGGGGCCCS-------SSCBCTTSCCCCCSH
T ss_pred             EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecchHHhCCCC-------CCCCCCCCCCCCCCc
Confidence            999987543222222334578999999999999999863  34666666666775432       346788877665666


Q ss_pred             cchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC
Q 042242          176 NFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                         |+.+|...|.     .  .+ ++++++||+.+||++... ..+...+  ...+.+  +.++.+.+..    .+..++
T Consensus       151 ---Y~~sK~~~e~~~~~~~~~~g-~~~~ilrp~~v~G~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~----~~~~~~  217 (337)
T 1r6d_A          151 ---YAASKAGSDLVARAYHRTYG-LDVRITRCCNNYGPYQHP-EKLIPLF--VTNLLD--GGTLPLYGDG----ANVREW  217 (337)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECEEECTTCCT-TSHHHHH--HHHHHT--TCCEEEETTS----CCEEEE
T ss_pred             ---hHHHHHHHHHHHHHHHHHHC-CCEEEEEeeeeECCCCCC-CChHHHH--HHHHhc--CCCcEEeCCC----CeeEee
Confidence               8888877762     2  24 899999999999975431 1221111  111222  3444443332    455678


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++++|+|++++.++..+. .   |++||+++++.+|+.|+++.+++.+|.+.
T Consensus       218 i~v~Dva~a~~~~~~~~~-~---g~~~~v~~~~~~s~~e~~~~i~~~~g~~~  265 (337)
T 1r6d_A          218 VHTDDHCRGIALVLAGGR-A---GEIYHIGGGLELTNRELTGILLDSLGADW  265 (337)
T ss_dssp             EEHHHHHHHHHHHHHHCC-T---TCEEEECCCCEEEHHHHHHHHHHHHTCCG
T ss_pred             EeHHHHHHHHHHHHhCCC-C---CCEEEeCCCCCccHHHHHHHHHHHhCCCc
Confidence            899999999999887542 2   47999999999999999999999999864

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.97  E-value=2e-29  Score=220.93  Aligned_cols=253  Identities=12%  Similarity=0.047  Sum_probs=179.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCccc---c---ccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEIT---A---IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~---~---~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      |+|||||||||||++|+++|++.. |++|++++|++...   .   ....+++++.+|++|.+++.++++++|.|+|+++
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   84 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   84 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence            699999999999999999999432 89999999975321   1   1235789999999999999999999998999987


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccC-----CCcccccCCcCcCCCCCCCCcc
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQG-----LPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~-----~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      ......+..+..+.+++|+.++.+++++|.+.+  . +++++|+..+|+....     ..+.....+++|+++..|..+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~--~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~-  160 (348)
T 1oc2_A           85 ESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD--I-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP-  160 (348)
T ss_dssp             CCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT--C-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSH-
T ss_pred             ccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC--C-eEEEecccceeCCCcccccccccccccCCCcCCCCCCCCCCc-
Confidence            543222222334578999999999999999874  2 6666666667754311     000001256788877665666 


Q ss_pred             chHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          177 FYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       177 ~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                        |+.+|...|.     ..  + ++++++||+.+||++... ..+...+  ...+.+  +.++.+.+..    ....+++
T Consensus       161 --Y~~sK~~~e~~~~~~~~~~g-i~~~ilrp~~v~G~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~----~~~~~~i  228 (348)
T 1oc2_A          161 --YSSTKAASDLIVKAWVRSFG-VKATISNCSNNYGPYQHI-EKFIPRQ--ITNILA--GIKPKLYGEG----KNVRDWI  228 (348)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHC-CEEEEEEECCEESTTCCT-TSHHHHH--HHHHHH--TCCCEEETTS----CCEEECE
T ss_pred             --cHHHHHHHHHHHHHHHHHhC-CCEEEEeeceeeCCCCCc-cchHHHH--HHHHHc--CCCceEecCC----CceEeeE
Confidence              8888877762     22  4 899999999999975431 1221111  111222  3333333322    4556789


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +++|+|++++.++..+ ..   |++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       229 ~v~Dva~~~~~~~~~~-~~---g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  276 (348)
T 1oc2_A          229 HTNDHSTGVWAILTKG-RM---GETYLIGADGEKNNKEVLELILEKMGQPKD  276 (348)
T ss_dssp             EHHHHHHHHHHHHHHC-CT---TCEEEECCSCEEEHHHHHHHHHHHTTCCTT
T ss_pred             EHHHHHHHHHHHhhCC-CC---CCeEEeCCCCCCCHHHHHHHHHHHhCCCcc
Confidence            9999999999988654 22   489999999999999999999999998753

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.2e-29  Score=215.13  Aligned_cols=232  Identities=18%  Similarity=0.114  Sum_probs=162.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc--
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS--  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~--  106 (303)
                      |||||||||||||++|+++|+ +.||+|++++|++....        +..|    +...+.++++|.|+|+++.....  
T Consensus         1 MkILVTGatGfIG~~L~~~L~-~~G~~V~~l~R~~~~~~--------~~~~----~~~~~~l~~~d~vihla~~~i~~~~   67 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLN-ARGHEVTLVSRKPGPGR--------ITWD----ELAASGLPSCDAAVNLAGENILNPL   67 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCTTE--------EEHH----HHHHHCCCSCSEEEECCCCCSSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCCcCe--------eecc----hhhHhhccCCCEEEEeccCcccchh
Confidence            589999999999999999999 68999999999865421        1122    23345667888899997643222  


Q ss_pred             --CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          107 --QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       107 --~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                        .+.....+..+.|+.++.++++++.....+...+++.|+..+|+..       ...+..|++|..|.+.   |+..+.
T Consensus        68 ~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~-------~~~~~~E~~p~~~~~~---~~~~~~  137 (298)
T 4b4o_A           68 RRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPS-------LTAEYDEDSPGGDFDF---FSNLVT  137 (298)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCC-------SSCCBCTTCCCSCSSH---HHHHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCC-------CCCcccccCCccccch---hHHHHH
Confidence              2234444588999999999999999876556666666776677554       2456788877654444   554443


Q ss_pred             HHHHh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          185 LKEKL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       185 ~~e~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      ..+..   ... ++++++||+.|||++....    ..   +....+ .+.... .|+.    .++.+++|++|+|++++.
T Consensus       138 ~~e~~~~~~~~~~~~~~~r~~~v~g~~~~~~----~~---~~~~~~-~~~~~~-~g~g----~~~~~~ihv~Dva~a~~~  204 (298)
T 4b4o_A          138 KWEAAARLPGDSTRQVVVRSGVVLGRGGGAM----GH---MLLPFR-LGLGGP-IGSG----HQFFPWIHIGDLAGILTH  204 (298)
T ss_dssp             HHHHHHCCSSSSSEEEEEEECEEECTTSHHH----HH---HHHHHH-TTCCCC-BTTS----CSBCCEEEHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCceeeeeeeeEEcCCCCch----hH---HHHHHh-cCCcce-eccc----CceeecCcHHHHHHHHHH
Confidence            33321   222 8999999999999643211    11   111111 122222 2333    566788999999999999


Q ss_pred             HhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++.++...    ++||+++++++|++|+++.+++++|+|.
T Consensus       205 ~~~~~~~~----g~yn~~~~~~~t~~e~~~~ia~~lgrp~  240 (298)
T 4b4o_A          205 ALEANHVH----GVLNGVAPSSATNAEFAQTFGAALGRRA  240 (298)
T ss_dssp             HHHCTTCC----EEEEESCSCCCBHHHHHHHHHHHHTCCC
T ss_pred             HHhCCCCC----CeEEEECCCccCHHHHHHHHHHHhCcCC
Confidence            99887543    5999999999999999999999999874

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.97  E-value=2.1e-29  Score=223.30  Aligned_cols=250  Identities=15%  Similarity=0.080  Sum_probs=175.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc--cc-CCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA--IQ-SSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~--~~-~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .++|+|||||||||||++|+++|+ +.| ++|++++|++....  .. ..+++++.+|+.|.+++.++++++|.|+|+++
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLL-ELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHH-HTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHH-HcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            345799999999999999999999 578 99999999865432  21 45789999999999999999999999999987


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC--cCC---CC-CCCCc
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD--EEC---PR-VSKSN  175 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~--e~~---~~-~p~~~  175 (303)
                      ......+..++.+.+++|+.++.+++++|++.. ...+++++|+..+|+...       ..++.  |++   +. .|..+
T Consensus       109 ~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~~V~~SS~~vyg~~~-------~~~~~~~E~~~~~~~~~~~~~  180 (377)
T 2q1s_A          109 YHGNQSSIHDPLADHENNTLTTLKLYERLKHFK-RLKKVVYSAAGCSIAEKT-------FDDAKATEETDIVSLHNNDSP  180 (377)
T ss_dssp             CSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCS-SCCEEEEEEEC---------------------CCCCCCCSSCCCSH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHcCCCC-------CCCcCcccccccccccCCCCc
Confidence            543322223445588999999999999998751 244666666666775431       33566  766   44 44555


Q ss_pred             cchHHHHHHHHHH-----hc--CCcceEEecCCceeecCC---------CCc---cchhhHHHHHHHHhhhCCCceeeCC
Q 042242          176 NFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSH---------RSL---YNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                         |+.+|...|.     ..  + ++++++||+.|||++.         ...   ..+...+  ...+.+  +.++...+
T Consensus       181 ---Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~--g~~~~~~g  252 (377)
T 2q1s_A          181 ---YSMSKIFGEFYSVYYHKQHQ-LPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTF--IYKALK--GMPLPLEN  252 (377)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHH--HHHHHT--TCCCCCSG
T ss_pred             ---hHHHHHHHHHHHHHHHHHhC-CCEEEEeeccEECCCCcccccccccCcccccccHHHHH--HHHHHc--CCCeEEeC
Confidence               8887777662     22  4 8999999999999754         110   1111111  111222  44444444


Q ss_pred             chhhhhhhcccCccHHHHHHH-HHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQ-HIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a-~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ..    ....++++++|+|++ ++.++..+.    .| +||+++++.+|+.|+++.+++.+|.+.+
T Consensus       253 ~g----~~~~~~i~v~Dva~a~i~~~~~~~~----~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~  309 (377)
T 2q1s_A          253 GG----VATRDFIFVEDVANGLIACAADGTP----GG-VYNIASGKETSIADLATKINEITGNNTE  309 (377)
T ss_dssp             GG----CCEECCEEHHHHHHHHHHHHHHCCT----TE-EEECCCCCCEEHHHHHHHHHHHHTCCSC
T ss_pred             CC----CeEEeeEEHHHHHHHHHHHHHhcCC----CC-eEEecCCCceeHHHHHHHHHHHhCCCCC
Confidence            33    466789999999999 888887753    24 9999999999999999999999998754

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.97  E-value=2e-29  Score=220.38  Aligned_cols=240  Identities=15%  Similarity=0.108  Sum_probs=172.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      ++|||||||||||++|+++|+ ..|++|++++|++.+.. ....+++++.+|+.|.+++.++++++|.|+|+++....  
T Consensus        14 M~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~~~--   90 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIR-AAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYYPS--   90 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--------
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCccCcC--
Confidence            589999999999999999999 68999999999876543 22237889999999999999999999999999775321  


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC----CCccchHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS----KSNNFYYVLED  183 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p----~~~~~~y~~~k  183 (303)
                      ...+..+.+++|+.++.+++++|.+.+  ..+++++|+..+|+....     ...+ +|+++..|    ..+   |+.+|
T Consensus        91 ~~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~~v~~SS~~~~~~~~~-----~~~~-~E~~~~~p~~~~~~~---Y~~sK  159 (342)
T 2x4g_A           91 RPRRWQEEVASALGQTNPFYAACLQAR--VPRILYVGSAYAMPRHPQ-----GLPG-HEGLFYDSLPSGKSS---YVLCK  159 (342)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHT--CSCEEEECCGGGSCCCTT-----SSCB-CTTCCCSSCCTTSCH---HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEECCHHhhCcCCC-----CCCC-CCCCCCCccccccCh---HHHHH
Confidence            222334478999999999999999863  446666666667754321     0134 77777766    445   88887


Q ss_pred             HHHHH-----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHH
Q 042242          184 LLKEK-----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQ  257 (303)
Q Consensus       184 ~~~e~-----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a  257 (303)
                      ...|.     . .+ ++++++||+.+||+..... . ...+  ...+..  +.+..+ +      ....++++++|+|++
T Consensus       160 ~~~e~~~~~~~~~g-~~~~ilrp~~v~g~~~~~~-~-~~~~--~~~~~~--~~~~~~-~------~~~~~~i~v~Dva~~  225 (342)
T 2x4g_A          160 WALDEQAREQARNG-LPVVIGIPGMVLGELDIGP-T-TGRV--ITAIGN--GEMTHY-V------AGQRNVIDAAEAGRG  225 (342)
T ss_dssp             HHHHHHHHHHHHTT-CCEEEEEECEEECSCCSSC-S-TTHH--HHHHHT--TCCCEE-E------CCEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHHhhcC-CcEEEEeCCceECCCCccc-c-HHHH--HHHHHc--CCCccc-c------CCCcceeeHHHHHHH
Confidence            77762     1 24 9999999999999754111 1 1111  111222  333333 3      455678899999999


Q ss_pred             HHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          258 HIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       258 ~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++.++..+..    +++||+++++ +|+.|+++.+.+.+|++.+
T Consensus       226 ~~~~~~~~~~----g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~  264 (342)
T 2x4g_A          226 LLMALERGRI----GERYLLTGHN-LEMADLTRRIAELLGQPAP  264 (342)
T ss_dssp             HHHHHHHSCT----TCEEEECCEE-EEHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHhCCCC----CceEEEcCCc-ccHHHHHHHHHHHhCCCCC
Confidence            9999877643    3899999999 9999999999999998753

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.97  E-value=5.4e-29  Score=217.85  Aligned_cols=254  Identities=15%  Similarity=0.202  Sum_probs=178.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCH-HHHHHHHhccCceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNP-LDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~-~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      |+|||||||||||++++++|++..|++|++++|++.+..  ....+++++.+|+.|. +.+.++++++|.|+|+++....
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~~~   80 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATP   80 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcccccCc
Confidence            489999999999999999999433899999999876533  2345789999999984 6788899999999999875432


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC---C-CCccchHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV---S-KSNNFYYVL  181 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~---p-~~~~~~y~~  181 (303)
                      .....++.+.+++|+.++.+++++|++.+   .+++++|+..+|+...       ..+++|+++..   | ..|...|+.
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~SS~~v~g~~~-------~~~~~e~~~~~~~~~~~~~~~~Y~~  150 (345)
T 2bll_A           81 IEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSEVYGMCS-------DKYFDEDHSNLIVGPVNKPRWIYSV  150 (345)
T ss_dssp             HHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGGGGBTCC-------CSSBCTTTCCCBCCCTTCGGGHHHH
T ss_pred             cchhcCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEEecHHHcCCCC-------CCCcCCcccccccCcccCcccccHH
Confidence            22223444588999999999999998764   5777777766775442       33566666432   1 123334888


Q ss_pred             HHHHHHH-----hc--CCcceEEecCCceeecCCCCcc----chhhHHHHHH-HHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          182 EDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLY----NFLGCLCVYG-AVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       182 ~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                      +|...|.     ..  + ++++++||+.|||++.....    .....+..+. .+.+  +.++...+..    .+..+++
T Consensus       151 sK~~~e~~~~~~~~~~~-~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g----~~~~~~i  223 (345)
T 2bll_A          151 SKQLLDRVIWAYGEKEG-LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE--GSPIKLIDGG----KQKRCFT  223 (345)
T ss_dssp             HHHHHHHHHHHHHHHHC-CCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHH--TCCEEEGGGS----CCEEECE
T ss_pred             HHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHc--CCCcEEECCC----CEEEEEE
Confidence            8777662     22  4 89999999999997643210    0001111111 1222  4454444432    4556789


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCC-CccHHhhHHHHHHHhcccC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGP-RFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~-~~s~~e~~~~i~~~~g~~~  300 (303)
                      +++|+|++++.++..+... ..+++||+++++ .+|+.|+++.+++.+|.+.
T Consensus       224 ~v~Dva~a~~~~~~~~~~~-~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~  274 (345)
T 2bll_A          224 DIRDGIEALYRIIENAGNR-CDGEIINIGNPENEASIEELGEMLLASFEKHP  274 (345)
T ss_dssp             EHHHHHHHHHHHHHCGGGT-TTTEEEEECCTTSEEEHHHHHHHHHHHHHTCT
T ss_pred             EHHHHHHHHHHHHhhcccc-CCCceEEeCCCCCCCCHHHHHHHHHHHhCCCc
Confidence            9999999999998765411 124899999986 8999999999999998764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.97  E-value=1.7e-28  Score=217.29  Aligned_cols=250  Identities=15%  Similarity=0.079  Sum_probs=178.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-----c-c-------cCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-----A-I-------QSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-----~-~-------~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      |+++|||||||||||++|+++|+ +.|++|++++|++...     . .       ...+++++.+|+.|.+++.++++++
T Consensus        23 M~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (375)
T 1t2a_A           23 MRNVALITGITGQDGSYLAEFLL-EKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV  101 (375)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc
Confidence            55799999999999999999999 5799999999986531     1 1       1246889999999999999999875


Q ss_pred             --CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC-CccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           94 --EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-ALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        94 --~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                        |.|+|+++......+..++.+.+++|+.++.++++++.+... +..+++++|+..+|+..       ...+++|+++.
T Consensus       102 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~-------~~~~~~E~~~~  174 (375)
T 1t2a_A          102 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKV-------QEIPQKETTPF  174 (375)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSC-------SSSSBCTTSCC
T ss_pred             CCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCC-------CCCCCCccCCC
Confidence              779999875433222334455889999999999999987632 11466666666677543       23467888876


Q ss_pred             CCCCccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhh-HHHHHH-HHhhhCCCceeeCCchhhh
Q 042242          171 VSKSNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLG-CLCVYG-AVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~~  241 (303)
                      .|..+   |+.+|...|.     ..  + ++++++||+.+||++...  ++.. .+..+. .+..+ ..+....|..   
T Consensus       175 ~~~~~---Y~~sK~~~e~~~~~~~~~~~-~~~~i~r~~~~~gp~~~~--~~~~~~~~~~~~~~~~g-~~~~~~~g~~---  244 (375)
T 1t2a_A          175 YPRSP---YGAAKLYAYWIVVNFREAYN-LFAVNGILFNHESPRRGA--NFVTRKISRSVAKIYLG-QLECFSLGNL---  244 (375)
T ss_dssp             CCCSH---HHHHHHHHHHHHHHHHHHHC-CEEEEEEECCEECTTSCT--TSHHHHHHHHHHHHHHT-SCSCEEESCT---
T ss_pred             CCCCh---hHHHHHHHHHHHHHHHHHhC-CCEEEEecccccCCCCCC--CcchHHHHHHHHHHHcC-CCceeEeCCC---
Confidence            66666   8888887762     22  4 899999999999975332  1111 111111 12221 1222223332   


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                       ....++++++|+|++++.++..+.  +   ++||+++++.+|+.|+++.+++.+|.+.
T Consensus       245 -~~~~~~i~v~Dva~a~~~~~~~~~--~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~  297 (375)
T 1t2a_A          245 -DAKRDWGHAKDYVEAMWLMLQNDE--P---EDFVIATGEVHSVREFVEKSFLHIGKTI  297 (375)
T ss_dssp             -TCEECCEEHHHHHHHHHHHHHSSS--C---CCEEECCSCCEEHHHHHHHHHHHTTCCE
T ss_pred             -CceeeeEEHHHHHHHHHHHHhcCC--C---ceEEEeCCCcccHHHHHHHHHHHhCCCc
Confidence             456788999999999999887653  2   6899999999999999999999999763

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.97  E-value=3.5e-29  Score=213.56  Aligned_cols=224  Identities=15%  Similarity=0.166  Sum_probs=166.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~  104 (303)
                      .|+++|||||| ||||++|+++|+ +.||+|++++|++.+.. ....+++++.+|+.|.+     ++++|.|+|+++...
T Consensus         3 ~m~~~ilVtGa-G~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~~   75 (286)
T 3ius_A            3 AMTGTLLSFGH-GYTARVLSRALA-PQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-----LDGVTHLLISTAPDS   75 (286)
T ss_dssp             --CCEEEEETC-CHHHHHHHHHHG-GGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-----CTTCCEEEECCCCBT
T ss_pred             CCcCcEEEECC-cHHHHHHHHHHH-HCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-----cCCCCEEEECCCccc
Confidence            35689999998 999999999999 67999999999876543 23468999999999954     778888999976532


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ..    .+         .+.++++++++...++.++++.|+..+|+..       ...+++|+++..|.++   |+.+|.
T Consensus        76 ~~----~~---------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~-------~~~~~~E~~~~~p~~~---Y~~sK~  132 (286)
T 3ius_A           76 GG----DP---------VLAALGDQIAARAAQFRWVGYLSTTAVYGDH-------DGAWVDETTPLTPTAA---RGRWRV  132 (286)
T ss_dssp             TB----CH---------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCC-------TTCEECTTSCCCCCSH---HHHHHH
T ss_pred             cc----cH---------HHHHHHHHHHhhcCCceEEEEeecceecCCC-------CCCCcCCCCCCCCCCH---HHHHHH
Confidence            21    11         2356888888743345677777776677554       2456888888777766   999888


Q ss_pred             HHHHh---c-CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          185 LKEKL---A-GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       185 ~~e~~---~-~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      ..|..   . + ++++++||+.+||++.... .   .      +.+  +.+..+.+.     ....++++++|+|++++.
T Consensus       133 ~~E~~~~~~~~-~~~~ilRp~~v~G~~~~~~-~---~------~~~--~~~~~~~~~-----~~~~~~i~v~Dva~a~~~  194 (286)
T 3ius_A          133 MAEQQWQAVPN-LPLHVFRLAGIYGPGRGPF-S---K------LGK--GGIRRIIKP-----GQVFSRIHVEDIAQVLAA  194 (286)
T ss_dssp             HHHHHHHHSTT-CCEEEEEECEEEBTTBSSS-T---T------SSS--SCCCEEECT-----TCCBCEEEHHHHHHHHHH
T ss_pred             HHHHHHHhhcC-CCEEEEeccceECCCchHH-H---H------Hhc--CCccccCCC-----CcccceEEHHHHHHHHHH
Confidence            88732   2 4 9999999999999754321 1   1      111  333333332     345678999999999999


Q ss_pred             HhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++..+. .   +++||+++++.+|+.|+++.+++.+|++.+
T Consensus       195 ~~~~~~-~---g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  231 (286)
T 3ius_A          195 SMARPD-P---GAVYNVCDDEPVPPQDVIAYAAELQGLPLP  231 (286)
T ss_dssp             HHHSCC-T---TCEEEECCSCCBCHHHHHHHHHHHHTCCCC
T ss_pred             HHhCCC-C---CCEEEEeCCCCccHHHHHHHHHHHcCCCCC
Confidence            998875 3   379999999999999999999999998865

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=218.81  Aligned_cols=247  Identities=14%  Similarity=0.035  Sum_probs=173.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEeecc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFWVT  103 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~~~  103 (303)
                      +++|+|||||||||||++|+++|+ +.|+      +....    ...++++.+|+.|.+.+.+++++  +|.|+|+++..
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~-~~g~------~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~~~   72 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVA-DGAG------LPGED----WVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAMV   72 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHH-TTTC------CTTCE----EEECCTTTCCTTSHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHH-hcCC------ccccc----ccccCceecccCCHHHHHHHHhhcCCCEEEECceec
Confidence            467899999999999999999999 6776      22111    12344557999999999999998  77899998763


Q ss_pred             cc-cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC-CCCccc-hHH
Q 042242          104 WA-SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV-SKSNNF-YYV  180 (303)
Q Consensus       104 ~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~-p~~~~~-~y~  180 (303)
                      .. .....++.+.+++|+.++.+++++|++.+  +.+++++|+..+|+..       ...+++|+++.. +..|.. .|+
T Consensus        73 ~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~--~~~~v~~SS~~vyg~~-------~~~~~~E~~~~~~~~~p~~~~Y~  143 (319)
T 4b8w_A           73 GGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG--ARKVVSCLSTCIFPDK-------TTYPIDETMIHNGPPHNSNFGYS  143 (319)
T ss_dssp             CCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT--CSEEEEECCGGGSCSS-------CCSSBCGGGGGBSCCCSSSHHHH
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEcchhhcCCC-------CCCCccccccccCCCCCCcchHH
Confidence            21 11223344589999999999999998763  4567777776677543       245677876321 122322 288


Q ss_pred             HHHHHHHH-----h--cCCcceEEecCCceeecCCCCcc---chhhHHHHHH-H-HhhhCCCceeeCCchhhhhhhcccC
Q 042242          181 LEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLY---NFLGCLCVYG-A-VCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       181 ~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                      .+|...|.     .  .+ ++++++||+.+||++.....   .++..+.... . +..  +.++.+.|..    ....++
T Consensus       144 ~sK~~~E~~~~~~~~~~~-~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g----~~~~~~  216 (319)
T 4b8w_A          144 YAKRMIDVQNRAYFQQYG-CTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSS--GSALTVWGTG----NPRRQF  216 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHC-CEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHH--TCCEEEESCS----CCEECE
T ss_pred             HHHHHHHHHHHHHHHhhC-CCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhcc--CCceEEeCCC----CeeEEE
Confidence            88777762     1  24 99999999999997653211   1222211111 0 122  4555554443    556788


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++++|+|++++.++..+...  .+++||+++++.+|+.|+++.+++.+|++.+
T Consensus       217 i~v~Dva~a~~~~~~~~~~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~  267 (319)
T 4b8w_A          217 IYSLDLAQLFIWVLREYNEV--EPIILSVGEEDEVSIKEAAEAVVEAMDFHGE  267 (319)
T ss_dssp             EEHHHHHHHHHHHHHHCCCS--SCEEECCCGGGCEEHHHHHHHHHHHTTCCSC
T ss_pred             EeHHHHHHHHHHHHhccccC--CceEEEecCCCceeHHHHHHHHHHHhCCCCc
Confidence            99999999999998875432  2479999999999999999999999998754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.97  E-value=3.1e-28  Score=211.98  Aligned_cols=244  Identities=12%  Similarity=0.030  Sum_probs=175.5

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHh--ccCce
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLT--LLEDV   96 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V   96 (303)
                      ++..+.+|+|||||||||||++|+++|+ +.|++|++++|+.....   ....+++++.+|+.|.+++.++++  ++|.|
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~v   92 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWL-PQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHV   92 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHG-GGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEE
Confidence            3445567899999999999999999999 67999999999754422   112578899999999999999999  88889


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      +|+|+..... +..++ + +++|+.++.++++++.+..  ..+++++|+..+|+....     ...+++|++  .|..+ 
T Consensus        93 ih~A~~~~~~-~~~~~-~-~~~N~~~~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~-----~~~~~~E~~--~~~~~-  159 (330)
T 2pzm_A           93 VHSAAAYKDP-DDWAE-D-AATNVQGSINVAKAASKAG--VKRLLNFQTALCYGRPAT-----VPIPIDSPT--APFTS-  159 (330)
T ss_dssp             EECCCCCSCT-TCHHH-H-HHHHTHHHHHHHHHHHHHT--CSEEEEEEEGGGGCSCSS-----SSBCTTCCC--CCCSH-
T ss_pred             EECCccCCCc-cccCh-h-HHHHHHHHHHHHHHHHHcC--CCEEEEecCHHHhCCCcc-----CCCCcCCCC--CCCCh-
Confidence            9998764332 22333 2 8999999999999998763  345666665556744311     011566766  33455 


Q ss_pred             chHHHHHHHHHHh-cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHH
Q 042242          177 FYYVLEDLLKEKL-AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLV  254 (303)
Q Consensus       177 ~~y~~~k~~~e~~-~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  254 (303)
                        |+.+|...|.. ... ++++++||+++||++..  .++...+  ...+..  +.+....+      . ..++++++|+
T Consensus       160 --Y~~sK~~~e~~~~~~~~~~~~iR~~~v~gp~~~--~~~~~~~--~~~~~~--~~~~~~~~------~-~~~~i~~~Dv  224 (330)
T 2pzm_A          160 --YGISKTAGEAFLMMSDVPVVSLRLANVTGPRLA--IGPIPTF--YKRLKA--GQKCFCSD------T-VRDFLDMSDF  224 (330)
T ss_dssp             --HHHHHHHHHHHHHTCSSCEEEEEECEEECTTCC--SSHHHHH--HHHHHT--TCCCCEES------C-EECEEEHHHH
T ss_pred             --HHHHHHHHHHHHHHcCCCEEEEeeeeeECcCCC--CCHHHHH--HHHHHc--CCEEeCCC------C-EecceeHHHH
Confidence              99999888843 222 89999999999997641  1221111  111222  22222122      3 4568899999


Q ss_pred             HH-HHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          255 AE-QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       255 a~-a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      |+ +++.++..+.  +   ++||+++++.+|+.|+++.+++.+|++
T Consensus       225 a~~a~~~~~~~~~--g---~~~~v~~~~~~s~~e~~~~i~~~~g~~  265 (330)
T 2pzm_A          225 LAIADLSLQEGRP--T---GVFNVSTGEGHSIKEVFDVVLDYVGAT  265 (330)
T ss_dssp             HHHHHHHTSTTCC--C---EEEEESCSCCEEHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhhcCC--C---CEEEeCCCCCCCHHHHHHHHHHHhCCC
Confidence            99 9998887653  3   899999999999999999999999986

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.97  E-value=6.3e-29  Score=218.90  Aligned_cols=256  Identities=16%  Similarity=0.132  Sum_probs=177.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc--cc-c----cCCCeEEEEecCCCHHHHHHHHh--ccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI--TA-I----QSSSYCFISCDLLNPLDIKRKLT--LLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~--~~-~----~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~   99 (303)
                      |+||||||+||||++|+++|++..|++|++++|+...  .. .    ...+++++.+|+.|.+++.++++  ++|.|+|+
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence            3799999999999999999995348999999997521  11 1    12478899999999999999998  78889999


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc-------EEEEeecccccccccC---CCcccccCCcCcCCC
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK-------HVSLQTGMKHYVSLQG---LPEEKQVRFYDEECP  169 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~-------~~~~~s~~~~y~~~~~---~~g~~~~~~~~e~~~  169 (303)
                      |+......+..+..+.+++|+.++.+++++|.+....+.       +++++|+..+|+....   .....+..+++|+++
T Consensus        81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~~~  160 (361)
T 1kew_A           81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA  160 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCCCC
Confidence            876432222233345889999999999999987621222       6666666667754310   000001126778777


Q ss_pred             CCCCCccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          170 RVSKSNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      ..|.++   |+.+|...|.     ..  + ++++++||+.|||+.... ..+...+  ...+.+  +.++...+..    
T Consensus       161 ~~~~~~---Y~~sK~~~e~~~~~~~~~~g-i~~~~vrp~~v~G~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~----  227 (361)
T 1kew_A          161 YAPSSP---YSASKASSDHLVRAWRRTYG-LPTIVTNCSNNYGPYHFP-EKLIPLV--ILNALE--GKPLPIYGKG----  227 (361)
T ss_dssp             CCCCSH---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECEEESTTCCT-TSHHHHH--HHHHHH--TCCEEEETTS----
T ss_pred             CCCCCc---cHHHHHHHHHHHHHHHHHhC-CcEEEEeeceeECCCCCc-ccHHHHH--HHHHHc--CCCceEcCCC----
Confidence            665566   8888877762     22  4 899999999999975421 1111111  111222  3344433332    


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ....++++++|+|++++.++..+ ..   |++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       228 ~~~~~~i~v~Dva~a~~~~~~~~-~~---g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~  282 (361)
T 1kew_A          228 DQIRDWLYVEDHARALHMVVTEG-KA---GETYNIGGHNEKKNLDVVFTICDLLDEIVP  282 (361)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHC-CT---TCEEEECCCCEEEHHHHHHHHHHHHHHHSC
T ss_pred             ceeEeeEEHHHHHHHHHHHHhCC-CC---CCEEEecCCCeeeHHHHHHHHHHHhCCcCc
Confidence            45567889999999999988654 22   479999999999999999999999987653

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.97  E-value=2.1e-29  Score=217.52  Aligned_cols=249  Identities=14%  Similarity=0.050  Sum_probs=176.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeecc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVT  103 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~  103 (303)
                      |+|+|||||||||||++|+++|++. .|++|++++|++..... ..+++++.+|+.|.+++.++++  ++|.|+|+++..
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~   79 (312)
T 2yy7_A            1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV-VNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALL   79 (312)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH-HHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc-cCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccC
Confidence            4678999999999999999999943 28999999998765321 2367889999999999999998  778899997653


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHH
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLED  183 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k  183 (303)
                      .. ....++.+.+++|+.++.+++++|++.+  ..+++++|+..+|+....      ..+..|+.+..|.++   |+.+|
T Consensus        80 ~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~------~~~~~e~~~~~~~~~---Y~~sK  147 (312)
T 2yy7_A           80 SA-TAEKNPAFAWDLNMNSLFHVLNLAKAKK--IKKIFWPSSIAVFGPTTP------KENTPQYTIMEPSTV---YGISK  147 (312)
T ss_dssp             HH-HHHHCHHHHHHHHHHHHHHHHHHHHTTS--CSEEECCEEGGGCCTTSC------SSSBCSSCBCCCCSH---HHHHH
T ss_pred             CC-chhhChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccHHHhCCCCC------CCCccccCcCCCCch---hHHHH
Confidence            22 1223344589999999999999998753  456777776667754321      235677777665666   88888


Q ss_pred             HHHHH-----hc--CCcceEEecCCceeecCCCCcc---chhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          184 LLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLY---NFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       184 ~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      ...|.     ..  + ++++++||+.+||+......   +....  .+....+  +.++...+..    ....++++++|
T Consensus       148 ~~~e~~~~~~~~~~~-~~~~~lrp~~v~g~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~----~~~~~~i~v~D  218 (312)
T 2yy7_A          148 QAGERWCEYYHNIYG-VDVRSIRYPGLISWSTPPGGGTTDYAVD--IFYKAIA--DKKYECFLSS----ETKMPMMYMDD  218 (312)
T ss_dssp             HHHHHHHHHHHHHHC-CEEECEEECEEECSSSCCCSCTTTHHHH--HHHHHHH--TSEEEESSCT----TCCEEEEEHHH
T ss_pred             HHHHHHHHHHHHhcC-CcEEEEeCCeEecCCCCCCCchhhhHHH--HHHHHHc--CCCeEEecCC----CceeeeeeHHH
Confidence            77762     22  4 89999999999996522111   11111  1111111  2233333332    45578899999


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      +|++++.++..+......+++||+++ +.+|+.|+++.+++.+|.
T Consensus       219 va~a~~~~~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~  262 (312)
T 2yy7_A          219 AIDATINIMKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPE  262 (312)
T ss_dssp             HHHHHHHHHHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhCcccccccCceEEeCC-CccCHHHHHHHHHHHCCC
Confidence            99999999887643100137999996 789999999999999883

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.96  E-value=1.6e-28  Score=215.06  Aligned_cols=260  Identities=17%  Similarity=0.180  Sum_probs=175.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-cc-----c-cCCCeEEEEecCCCHHHHHHHHhc--cCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-TA-----I-QSSSYCFISCDLLNPLDIKRKLTL--LEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-~~-----~-~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~   99 (303)
                      |+|||||||||||++|+++|+ +.|++|++++|.... ..     . ...+++++.+|++|.+++.+++++  +|.|+|+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFAL-SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             cEEEEeCCCchhHHHHHHHHH-hCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence            689999999999999999999 689999999985321 10     1 123588999999999999999998  8889999


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccc---------ccCCcCcCCCC
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEK---------QVRFYDEECPR  170 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~---------~~~~~~e~~~~  170 (303)
                      |+......+..++.+.+++|+.++.+++++|++...+ .+++++|+..+|+......-..         ...+.+|+.+.
T Consensus        81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~-~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~  159 (347)
T 1orr_A           81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN-CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL  159 (347)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred             CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-ceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCC
Confidence            8754332223344558899999999999999987422 2556666656775432100000         01124555554


Q ss_pred             CCCCccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCcc--chhhHHHHHHHHhhhCC--CceeeCCchh
Q 042242          171 VSKSNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLY--NFLGCLCVYGAVCKHLN--LPFVFGGTRE  239 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~g~~~  239 (303)
                      .|..+   |+.+|...|.     ..  + ++++++||+.|||+......  .....+. ...+....+  .++...|.. 
T Consensus       160 ~~~~~---Y~~sK~~~E~~~~~~~~~~g-i~~~ilrp~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~g-  233 (347)
T 1orr_A          160 DFHSP---YGCSKGAADQYMLDYARIFG-LNTVVFRHSSMYGGRQFATYDQGWVGWFC-QKAVEIKNGINKPFTISGNG-  233 (347)
T ss_dssp             CCCHH---HHHHHHHHHHHHHHHHHHHC-CEEEEEEECCEECTTCCCBTTBCHHHHHH-HHHHHHHTTCCCCEEEESSS-
T ss_pred             CCCCc---hHHHHHHHHHHHHHHHHHhC-CcEEEEccCceeCcCCCCCCcCcHHHHHH-HHHHhCcccCCCCeEEecCC-
Confidence            44444   8888877662     22  4 89999999999997543211  1111111 111111110  144444433 


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC--CccHHhhHHHHHHHhcccCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP--RFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~--~~s~~e~~~~i~~~~g~~~~  301 (303)
                         .+..++++++|+|++++.++..+..  ..|++||++++.  .+|+.|+++.+++.+|.+.+
T Consensus       234 ---~~~~~~i~v~Dva~a~~~~~~~~~~--~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~  292 (347)
T 1orr_A          234 ---KQVRDVLHAEDMISLYFTALANVSK--IRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMR  292 (347)
T ss_dssp             ---CCEEECEEHHHHHHHHHHHHHTHHH--HTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCC
T ss_pred             ---cceEeeEEHHHHHHHHHHHHhcccc--CCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCC
Confidence               4567789999999999998875221  224799999987  49999999999999998754

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.96  E-value=3.4e-28  Score=215.82  Aligned_cols=251  Identities=14%  Similarity=0.068  Sum_probs=177.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---cc---------CC-CeEEEEecCCCHHHHHHHHh
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQ---------SS-SYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~---------~~-~~~~~~~D~~~~~~l~~~~~   91 (303)
                      ..|+++|||||||||||++|+++|+ ..|++|++++|++....   ..         .. +++++.+|+.|.+++.++++
T Consensus        25 ~~M~k~vlVtGatG~IG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~  103 (381)
T 1n7h_A           25 VEPRKIALITGITGQDGSYLTEFLL-GKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWID  103 (381)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             hhhCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHH
Confidence            3355799999999999999999999 57999999999865411   11         12 78899999999999999998


Q ss_pred             cc--CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCC---ccEEEEeecccccccccCCCcccccCCcCc
Q 042242           92 LL--EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKA---LKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        92 ~~--~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~---~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      ++  |.|+|+++......+..+..+.+++|+.++.+++++|.+...+   -.+++++|+..+|+...       . +++|
T Consensus       104 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~-------~-~~~E  175 (381)
T 1n7h_A          104 VIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-------P-PQSE  175 (381)
T ss_dssp             HHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-------S-SBCT
T ss_pred             hcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCC-------C-CCCC
Confidence            75  7799998754332223344558899999999999999876311   12666666666775441       2 6788


Q ss_pred             CCCCCCCCccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhhH-HHHHH-HHhhhCCCceeeCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGC-LCVYG-AVCKHLNLPFVFGGT  237 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~g~  237 (303)
                      +++..|..+   |+.+|...|.     ..  + ++++++|++++||++....  +... +..+. .+.++.. +....|.
T Consensus       176 ~~~~~~~~~---Y~~sK~~~E~~~~~~~~~~~-~~~~~~r~~~~~gp~~~~~--~~~~~~~~~~~~~~~g~~-~~~~~g~  248 (381)
T 1n7h_A          176 TTPFHPRSP---YAASKCAAHWYTVNYREAYG-LFACNGILFNHESPRRGEN--FVTRKITRALGRIKVGLQ-TKLFLGN  248 (381)
T ss_dssp             TSCCCCCSH---HHHHHHHHHHHHHHHHHHHC-CEEEEEEECCEECTTSCTT--SHHHHHHHHHHHHHHTSC-CCEEESC
T ss_pred             CCCCCCCCc---hHHHHHHHHHHHHHHHHHhC-CcEEEEEeCceeCCCCCCc--chhHHHHHHHHHHHcCCC-CeEEeCC
Confidence            877666666   8888887762     22  4 8889999999999754321  1111 11111 1222211 2222233


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      .    ....++++++|+|++++.++..+.     +++||+++++.+|+.|+++.+++.+|.+.
T Consensus       249 ~----~~~~~~v~v~Dva~a~~~~~~~~~-----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~  302 (381)
T 1n7h_A          249 L----QASRDWGFAGDYVEAMWLMLQQEK-----PDDYVVATEEGHTVEEFLDVSFGYLGLNW  302 (381)
T ss_dssp             T----TCEEECEEHHHHHHHHHHHHTSSS-----CCEEEECCSCEEEHHHHHHHHHHHTTCCG
T ss_pred             C----CceeeeEEHHHHHHHHHHHHhCCC-----CCeEEeeCCCCCcHHHHHHHHHHHcCCCc
Confidence            2    455678999999999999987653     26899999999999999999999999753

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.96  E-value=3.7e-28  Score=212.48  Aligned_cols=250  Identities=15%  Similarity=0.069  Sum_probs=177.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---c----cCCCeEEEEecCCCHHHHHHHHhcc--Ccee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---I----QSSSYCFISCDLLNPLDIKRKLTLL--EDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~----~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~   97 (303)
                      ++|+|||||||||||++++++|+ +.|++|++++|++....   .    ...+++++.+|+.|.+++.++++++  |.|+
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLL-EKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            35799999999999999999999 57999999999875421   0    1236889999999999999999875  7799


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccc
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNF  177 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~  177 (303)
                      |+|+......+..+..+.+++|+.++.+++++|.+... ..+++++|+..+|+...       ..++.|+.+..|..+  
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~~iv~~SS~~vyg~~~-------~~~~~e~~~~~~~~~--  150 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKP-DTKFYQASTSEMFGKVQ-------EIPQTEKTPFYPRSP--  150 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-TCEEEEEEEGGGGCSCS-------SSSBCTTSCCCCCSH--
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEechhhcCCCC-------CCCCCccCCCCCCCh--
Confidence            99876433222233445889999999999999997631 24666666666775542       346778777665666  


Q ss_pred             hHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhhHHHHHH-HHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          178 YYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYG-AVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       178 ~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                       |+.+|...|.     ..  + ++++++|++++||++.... .+...+.... .+..+ ..+....+..    ....+++
T Consensus       151 -Y~~sK~~~e~~~~~~~~~~~-~~~~~~r~~~~~gpg~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~  222 (345)
T 2z1m_A          151 -YAVAKLFGHWITVNYREAYN-MFACSGILFNHESPLRGIE-FVTRKITYSLARIKYG-LQDKLVLGNL----NAKRDWG  222 (345)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHC-CCEEEEEECCEECTTSCTT-SHHHHHHHHHHHHHTT-SCSCEEESCT----TCEECCE
T ss_pred             -hHHHHHHHHHHHHHHHHHhC-CceEeeeeeeecCCCCCCc-chhHHHHHHHHHHHcC-CCCeeeeCCC----CceeeeE
Confidence             8888877762     22  3 8889999999999754321 1111111111 12221 1122222322    3455788


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +++|+|++++.++..+..     ++||+++++.+|+.|+++.+++.+|++.
T Consensus       223 ~v~Dva~a~~~~~~~~~~-----~~~~i~~~~~~s~~e~~~~i~~~~g~~~  268 (345)
T 2z1m_A          223 YAPEYVEAMWLMMQQPEP-----DDYVIATGETHTVREFVEKAAKIAGFDI  268 (345)
T ss_dssp             EHHHHHHHHHHHHTSSSC-----CCEEECCSCCEEHHHHHHHHHHHTTCCE
T ss_pred             EHHHHHHHHHHHHhCCCC-----ceEEEeCCCCccHHHHHHHHHHHhCCCc
Confidence            999999999999876531     6899999999999999999999999863

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.96  E-value=1.3e-28  Score=216.73  Aligned_cols=244  Identities=12%  Similarity=0.026  Sum_probs=173.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhc-----cCceeEEe
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTL-----LEDVTHIF  100 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~-----~~~V~~~~  100 (303)
                      +|+|||||||||||++|+++|+ +.| ++|++++|.+.... ....++. +.+|+.|.+.+..++++     +|.|+|++
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A  123 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALN-DKGITDILVVDNLKDGTKFVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEG  123 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHH-HTTCCCEEEEECCSSGGGGGGTTTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-HCCCcEEEEEecCCCcchhhcccCce-EeeecCcHHHHHHHHhhcccCCCCEEEECC
Confidence            4789999999999999999999 578 89999999865421 1122344 67899999999999874     78899997


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHH
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYV  180 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~  180 (303)
                      +....  ...+..+.+++|+.++.+++++|.+...   +++++|+..+|+..       ...+++|+++..|..+   |+
T Consensus       124 ~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~---r~V~~SS~~v~g~~-------~~~~~~E~~~~~p~~~---Y~  188 (357)
T 2x6t_A          124 ACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI---PFLYASSAATYGGR-------TSDFIESREYEKPLNV---FG  188 (357)
T ss_dssp             SCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC---CEEEEEEGGGGCSC-------SSCCCSSGGGCCCSSH---HH
T ss_pred             cccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEcchHHhCCC-------CCCCcCCcCCCCCCCh---hH
Confidence            75433  2222344899999999999999998632   55555555577543       1346788877666666   88


Q ss_pred             HHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhh-cccCccHH
Q 042242          181 LEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEY-CLDGSDSR  252 (303)
Q Consensus       181 ~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  252 (303)
                      .+|...|.     .... ++++++||+.|||++..........+..+.. +..  +.++...+..    .. ..++++++
T Consensus       189 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~i~v~  262 (357)
T 2x6t_A          189 YSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNN--GESPKLFEGS----ENFKRDFVYVG  262 (357)
T ss_dssp             HHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHT--TCCCEEETTG----GGCEECEEEHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHc--CCCcEEeCCC----CcceEccEEHH
Confidence            88877762     2322 8999999999999754321111011111111 222  3343333432    45 66789999


Q ss_pred             HHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          253 LVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       253 d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      |+|++++.++..+.  +   ++||+++++.+|+.|+++.+++.+|.+
T Consensus       263 Dva~ai~~~~~~~~--~---~~~~i~~~~~~s~~e~~~~i~~~~g~~  304 (357)
T 2x6t_A          263 DVADVNLWFLENGV--S---GIFNLGTGRAESFQAVADATLAYHKKG  304 (357)
T ss_dssp             HHHHHHHHHHHHCC--C---EEEEESCSCCEEHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCC--C---CeEEecCCCcccHHHHHHHHHHHcCCC
Confidence            99999999987764  3   799999999999999999999999986

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.96  E-value=3.1e-28  Score=217.21  Aligned_cols=265  Identities=15%  Similarity=0.107  Sum_probs=178.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHh-hcCCCeEEEEecCCccc---------c-cc-----------CCC---eEEEEecCCCH
Q 042242           29 NVAVIFGVTGLVGKELARRLI-STANWKVYGIARKPEIT---------A-IQ-----------SSS---YCFISCDLLNP   83 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~-~~~g~~V~~~~r~~~~~---------~-~~-----------~~~---~~~~~~D~~~~   83 (303)
                      |+|||||||||||++|+++|+ + .|++|++++|.....         . ..           ..+   ++++.+|+.|.
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-CCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHh-CCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            589999999999999999998 5 689999999975431         1 10           124   88999999999


Q ss_pred             HHHHHHHh--c-cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccc
Q 042242           84 LDIKRKLT--L-LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        84 ~~l~~~~~--~-~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                      +++.++++  + +|.|||+|+......+..+..+.+++|+.++.+++++|++..  ..+++++|+..+|+..........
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~--~~~iv~~SS~~v~g~~~~~~~~~~  159 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK--CDKIIFSSSAAIFGNPTMGSVSTN  159 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCEEEEEEEGGGTBSCCC-----C
T ss_pred             HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhC--CCEEEEECCHHHhCCCCccccccc
Confidence            99999998  5 788999987543322233445589999999999999998763  345566666557754320000001


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCC--------ccchhhHHHHH--HH
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRS--------LYNFLGCLCVY--GA  223 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~--~~  223 (303)
                      ..+++|+++..|..+   |+.+|...|.     ..  + ++++++||+.|||++...        ...++..+...  ..
T Consensus       160 ~~~~~E~~~~~p~~~---Y~~sK~~~e~~~~~~~~~~g-i~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~  235 (397)
T 1gy8_A          160 AEPIDINAKKSPESP---YGESKLIAERMIRDCAEAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD  235 (397)
T ss_dssp             CCCBCTTSCCBCSSH---HHHHHHHHHHHHHHHHHHHC-CEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHH
T ss_pred             ccCcCccCCCCCCCc---hHHHHHHHHHHHHHHHHHHC-CcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHH
Confidence            356788887665566   8888877762     21  4 899999999999975321        11122211100  01


Q ss_pred             HhhhCC----------CceeeCCch---hhhhhhcccCccHHHHHHHHHHHhcCcCCcCC--CC---ceEEeecCCCccH
Q 042242          224 VCKHLN----------LPFVFGGTR---EIWEEYCLDGSDSRLVAEQHIWVATNDDISST--KG---QAFNAINGPRFTW  285 (303)
Q Consensus       224 ~~~~~~----------~~~~~~g~~---~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~--~g---~~yni~~~~~~s~  285 (303)
                      +..+..          .++.+.|..   ... ....++++++|+|++++.++..+...+.  .+   ++||+++++.+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~  314 (397)
T 1gy8_A          236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDG-TCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSV  314 (397)
T ss_dssp             HSCC-----------CCCEEEECSCSSSTTS-SCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEH
T ss_pred             HHhcCccccccccccCCCceeecCcccCCCC-CeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccH
Confidence            112111          234443310   001 5667899999999999988865432100  12   6899999999999


Q ss_pred             HhhHHHHHHHhcccCC
Q 042242          286 KEIWPSIGKKFGVKVP  301 (303)
Q Consensus       286 ~e~~~~i~~~~g~~~~  301 (303)
                      .|+++.+++.+|.+.+
T Consensus       315 ~e~~~~i~~~~g~~~~  330 (397)
T 1gy8_A          315 REVIEVARKTTGHPIP  330 (397)
T ss_dssp             HHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999999998754

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.96  E-value=8.7e-29  Score=211.76  Aligned_cols=226  Identities=15%  Similarity=0.084  Sum_probs=170.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~~  104 (303)
                      ..++|||||||||||++|+++|+ ..|++|++++|+.              +|+.|.+++.++++  ++|.|+|+++...
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~--------------~Dl~d~~~~~~~~~~~~~d~vih~A~~~~   75 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLK-GKNVEVIPTDVQD--------------LDITNVLAVNKFFNEKKPNVVINCAAHTA   75 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHT-TSSEEEEEECTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHH-hCCCeEEeccCcc--------------CCCCCHHHHHHHHHhcCCCEEEECCccCC
Confidence            45799999999999999999999 6899999999972              79999999999998  6788999987543


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ......++.+.+++|+.++.+++++|++.+  . +++++|+..+|+..       ...+++|+++..|.++   |+.+|.
T Consensus        76 ~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~--~-~iv~~SS~~v~~~~-------~~~~~~E~~~~~~~~~---Y~~sK~  142 (292)
T 1vl0_A           76 VDKCEEQYDLAYKINAIGPKNLAAAAYSVG--A-EIVQISTDYVFDGE-------AKEPITEFDEVNPQSA---YGKTKL  142 (292)
T ss_dssp             HHHHHHCHHHHHHHHTHHHHHHHHHHHHHT--C-EEEEEEEGGGSCSC-------CSSCBCTTSCCCCCSH---HHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHcC--C-eEEEechHHeECCC-------CCCCCCCCCCCCCccH---HHHHHH
Confidence            322233445689999999999999999864  2 56666666677543       1346788887766666   999988


Q ss_pred             HHHHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          185 LKEKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       185 ~~e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      ..|..   .. .+++++||+.+||+ ..   ++...+  ...+..  +.++...+      ....++++++|+|++++.+
T Consensus       143 ~~E~~~~~~~-~~~~~lR~~~v~G~-~~---~~~~~~--~~~~~~--~~~~~~~~------~~~~~~i~v~Dva~~~~~~  207 (292)
T 1vl0_A          143 EGENFVKALN-PKYYIVRTAWLYGD-GN---NFVKTM--INLGKT--HDELKVVH------DQVGTPTSTVDLARVVLKV  207 (292)
T ss_dssp             HHHHHHHHHC-SSEEEEEECSEESS-SS---CHHHHH--HHHHHH--CSEEEEES------SCEECCEEHHHHHHHHHHH
T ss_pred             HHHHHHHhhC-CCeEEEeeeeeeCC-Cc---ChHHHH--HHHHhc--CCcEEeec------CeeeCCccHHHHHHHHHHH
Confidence            88843   13 67999999999996 21   121111  111222  44544445      3445788999999999998


Q ss_pred             hcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          262 ATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +..+  .+   ++||+++++.+|+.|+++.+++.+|++.
T Consensus       208 ~~~~--~~---~~~~i~~~~~~s~~e~~~~i~~~~g~~~  241 (292)
T 1vl0_A          208 IDEK--NY---GTFHCTCKGICSWYDFAVEIFRLTGIDV  241 (292)
T ss_dssp             HHHT--CC---EEEECCCBSCEEHHHHHHHHHHHHCCCC
T ss_pred             HhcC--CC---cEEEecCCCCccHHHHHHHHHHHhCCCC
Confidence            8765  33   7999999999999999999999999764

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.96  E-value=1.3e-28  Score=213.46  Aligned_cols=244  Identities=16%  Similarity=0.074  Sum_probs=172.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~~  104 (303)
                      ++|+|||||||||||++|+++|+ ..|++|++++|+.             .+|+.|.+++.++++  ++|.|+|+++...
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~v~~~~r~~-------------~~D~~d~~~~~~~~~~~~~d~vih~a~~~~   67 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLE-QRGDVELVLRTRD-------------ELNLLDSRAVHDFFASERIDQVYLAAAKVG   67 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHT-TCTTEEEECCCTT-------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-hCCCeEEEEecCc-------------cCCccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence            45799999999999999999999 6899999988763             279999999999998  7888999976532


Q ss_pred             c-cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC-CCCc-cchHHH
Q 042242          105 A-SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV-SKSN-NFYYVL  181 (303)
Q Consensus       105 ~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~-p~~~-~~~y~~  181 (303)
                      . .....++.+.+++|+.++.+++++|++..  ..+++++|+..+|+...       ..+++|+++.. +..| ...|+.
T Consensus        68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~vyg~~~-------~~~~~E~~~~~~~~~p~~~~Y~~  138 (321)
T 1e6u_A           68 GIVANNTYPADFIYQNMMIESNIIHAAHQND--VNKLLFLGSSCIYPKLA-------KQPMAESELLQGTLEPTNEPYAI  138 (321)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCEEEEECCGGGSCTTC-------CSSBCGGGTTSSCCCGGGHHHHH
T ss_pred             CcchhhhCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEccHHHcCCCC-------CCCcCccccccCCCCCCCCccHH
Confidence            1 11223344588999999999999998763  45777777777775432       34677776321 1223 224888


Q ss_pred             HHHHHHH-----h--cCCcceEEecCCceeecCCCCc---cchhhHHHHHHHHhhh--CC-CceeeCCchhhhhhhcccC
Q 042242          182 EDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSL---YNFLGCLCVYGAVCKH--LN-LPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       182 ~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~--~~-~~~~~~g~~~~~~~~~~~~  248 (303)
                      +|...|.     .  .+ ++++++||+.+||++....   ..++..+...  +...  .+ .++.+.+..    ....++
T Consensus       139 sK~~~E~~~~~~~~~~~-~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g----~~~~~~  211 (321)
T 1e6u_A          139 AKIAGIKLCESYNRQYG-RDYRSVMPTNLYGPHDNFHPSNSHVIPALLRR--FHEATAQKAPDVVVWGSG----TPMREF  211 (321)
T ss_dssp             HHHHHHHHHHHHHHHHC-CEEEEEEECEEESTTCCCCTTCSSHHHHHHHH--HHHHHHHTCSEEEEESCS----CCEECE
T ss_pred             HHHHHHHHHHHHHHHhC-CCEEEEEeCCcCCcCCCCCCCCCccHHHHHHH--HHHhhhcCCCceEEcCCC----CEEEEe
Confidence            8777762     2  24 9999999999999754321   1222222111  1111  12 344444432    556788


Q ss_pred             ccHHHHHHHHHHHhcCcCCc-----CCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          249 SDSRLVAEQHIWVATNDDIS-----STKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~-----~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++++|+|++++.++..+...     ...+++||+++++.+|+.|+++.+++.+|.+.
T Consensus       212 i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~  268 (321)
T 1e6u_A          212 LHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG  268 (321)
T ss_dssp             EEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCS
T ss_pred             EEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCC
Confidence            99999999999998776431     00137999999999999999999999999865

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.96  E-value=5.3e-29  Score=213.78  Aligned_cols=232  Identities=13%  Similarity=0.060  Sum_probs=172.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEeeccccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFWVTWAS  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~~~~~~  106 (303)
                      |+|||||||||||++++++|+ . |++|++++|++.          ++.+|+.|.+++.+++++  +|.|+|+++.....
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~----------~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~   68 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-P-VGNLIALDVHSK----------EFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVD   68 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-T-TSEEEEECTTCS----------SSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred             CeEEEECCCCHHHHHHHHHhh-c-CCeEEEeccccc----------cccccCCCHHHHHHHHHhcCCCEEEECcccCCHh
Confidence            479999999999999999998 4 899999999862          346899999999999987  78899998754322


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      ....++.+.++.|+.++.+++++|++.+.   +++++|+..+|+..       ...++.|+++..|.++   |+.+|...
T Consensus        69 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~---~~v~~SS~~vy~~~-------~~~~~~E~~~~~p~~~---Y~~sK~~~  135 (299)
T 1n2s_A           69 KAESEPELAQLLNATSVEAIAKAANETGA---WVVHYSTDYVFPGT-------GDIPWQETDATSPLNV---YGKTKLAG  135 (299)
T ss_dssp             HHTTCHHHHHHHHTHHHHHHHHHHTTTTC---EEEEEEEGGGSCCC-------TTCCBCTTSCCCCSSH---HHHHHHHH
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHcCC---cEEEEecccEEeCC-------CCCCCCCCCCCCCccH---HHHHHHHH
Confidence            22233445889999999999999987643   46666666677544       2346788887766666   99998888


Q ss_pred             HHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc
Q 042242          187 EKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT  263 (303)
Q Consensus       187 e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~  263 (303)
                      |..   .. .+++++||+.+||++..   ++...+.  ..+..  +.++...|      ....++++++|+|++++.++.
T Consensus       136 E~~~~~~~-~~~~ilRp~~v~G~~~~---~~~~~~~--~~~~~--~~~~~~~~------~~~~~~i~v~Dva~~~~~~~~  201 (299)
T 1n2s_A          136 EKALQDNC-PKHLIFRTSWVYAGKGN---NFAKTML--RLAKE--RQTLSVIN------DQYGAPTGAELLADCTAHAIR  201 (299)
T ss_dssp             HHHHHHHC-SSEEEEEECSEECSSSC---CHHHHHH--HHHHH--CSEEEEEC------SCEECCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCeEEEeeeeecCCCcC---cHHHHHH--HHHhc--CCCEEeec------CcccCCeeHHHHHHHHHHHHH
Confidence            742   13 58999999999996543   2211111  11222  44555555      345678899999999999887


Q ss_pred             CcC-CcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          264 NDD-ISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       264 ~~~-~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      .+. .. ..+++||+++++.+|+.|+++.+++.+|.+.
T Consensus       202 ~~~~~~-~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~  238 (299)
T 1n2s_A          202 VALNKP-EVAGLYHLVAGGTTTWHDYAALVFDEARKAG  238 (299)
T ss_dssp             HHHHCG-GGCEEEECCCBSCEEHHHHHHHHHHHHHHHT
T ss_pred             Hhcccc-ccCceEEEeCCCCCCHHHHHHHHHHHhCCCc
Confidence            652 11 0137999999999999999999999998763

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.96  E-value=3e-29  Score=217.27  Aligned_cols=237  Identities=15%  Similarity=0.088  Sum_probs=167.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc---cc------ccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI---TA------IQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~---~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      .|+++|||||||||||++|+++|+ +.|++|++++|++..   ..      ....+++++.+|+.          ++|.|
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----------~~d~v   73 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALV-ASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS----------DVRLV   73 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHH-HTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT----------TEEEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHH-HCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc----------cCCEE
Confidence            356899999999999999999999 679999999998762   11      11234555555654          67789


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      +|+++..........+.+.++ |+.++.+++++|++.+  +.+++++|+..+|+..       ...+++|+++..|.++ 
T Consensus        74 i~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~--v~~~v~~SS~~v~~~~-------~~~~~~E~~~~~p~~~-  142 (321)
T 3vps_A           74 YHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVG--VPKVVVGSTCEVYGQA-------DTLPTPEDSPLSPRSP-  142 (321)
T ss_dssp             EECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHT--CCEEEEEEEGGGGCSC-------SSSSBCTTSCCCCCSH-
T ss_pred             EECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcC--CCeEEEecCHHHhCCC-------CCCCCCCCCCCCCCCh-
Confidence            999775433222222223567 9999999999999874  4566666666677554       2457888888776666 


Q ss_pred             chHHHHHHHHH-----HhcCC-c-ceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          177 FYYVLEDLLKE-----KLAGK-V-AWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       177 ~~y~~~k~~~e-----~~~~~-~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                        |+.+|...|     +.... + +++++||+.+||++... ..+...+.  ..+..  +.++...+..    ....+++
T Consensus       143 --Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-~~~~~~~~--~~~~~--~~~~~~~~~~----~~~~~~v  211 (321)
T 3vps_A          143 --YAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP-DALVPRLC--ANLLT--RNELPVEGDG----EQRRDFT  211 (321)
T ss_dssp             --HHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT-TSHHHHHH--HHHHH--HSEEEEETTS----CCEECEE
T ss_pred             --hHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC-CChHHHHH--HHHHc--CCCeEEeCCC----CceEceE
Confidence              888887766     22323 7 99999999999975432 11111211  11222  3344444433    4667889


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +++|+|++++.++..+..    | +||+++++.+|+.|+++.++ .+|.+.+
T Consensus       212 ~v~Dva~~~~~~~~~~~~----g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~  257 (321)
T 3vps_A          212 YITDVVDKLVALANRPLP----S-VVNFGSGQSLSVNDVIRILQ-ATSPAAE  257 (321)
T ss_dssp             EHHHHHHHHHHGGGSCCC----S-EEEESCSCCEEHHHHHHHHH-TTCTTCE
T ss_pred             EHHHHHHHHHHHHhcCCC----C-eEEecCCCcccHHHHHHHHH-HhCCCCc
Confidence            999999999999887642    4 99999999999999999999 9998754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.7e-28  Score=202.26  Aligned_cols=218  Identities=12%  Similarity=0.112  Sum_probs=157.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      +++|||||||||||++|+++|+ +.|++|++++|++.+......+++++.+|+.|.+++.++++++|.|+|+++..... 
T Consensus         4 m~~ilItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~-   81 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEAL-NRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNN-   81 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHH-TTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-----
T ss_pred             CCEEEEEcCCchHHHHHHHHHH-HCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCC-
Confidence            3699999999999999999999 68999999999987654334789999999999999999999999999997643211 


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                           .+.++.|+.++.++++++++..  ..+++++|+...|....        ....++.+..|..+   |+.+|...|
T Consensus        82 -----~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~Ss~~~~~~~~--------~~~~~~~~~~p~~~---Y~~sK~~~e  143 (227)
T 3dhn_A           82 -----PDIYDETIKVYLTIIDGVKKAG--VNRFLMVGGAGSLFIAP--------GLRLMDSGEVPENI---LPGVKALGE  143 (227)
T ss_dssp             -------CCSHHHHHHHHHHHHHHHTT--CSEEEEECCSTTSEEET--------TEEGGGTTCSCGGG---HHHHHHHHH
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHhC--CCEEEEeCChhhccCCC--------CCccccCCcchHHH---HHHHHHHHH
Confidence                 1267889999999999999863  44666666554443321        12334445444455   998888877


Q ss_pred             -----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          188 -----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       188 -----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                           +.... ++++++||+.+||++..... + .         .....+ ...+.      . .++++++|+|++++.+
T Consensus       144 ~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~-~-~---------~~~~~~-~~~~~------~-~~~i~~~Dva~ai~~~  204 (227)
T 3dhn_A          144 FYLNFLMKEKEIDWVFFSPAADMRPGVRTGR-Y-R---------LGKDDM-IVDIV------G-NSHISVEDYAAAMIDE  204 (227)
T ss_dssp             HHHHTGGGCCSSEEEEEECCSEEESCCCCCC-C-E---------EESSBC-CCCTT------S-CCEEEHHHHHHHHHHH
T ss_pred             HHHHHHhhccCccEEEEeCCcccCCCccccc-e-e---------ecCCCc-ccCCC------C-CcEEeHHHHHHHHHHH
Confidence                 12233 99999999999997543221 0 0         001112 22221      1 4689999999999999


Q ss_pred             hcCcCCcCCCCceEEeecCCCccHHh
Q 042242          262 ATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                      +.++...+   ++|+++++++.+|.+
T Consensus       205 l~~~~~~g---~~~~~~~~~~~~~~~  227 (227)
T 3dhn_A          205 LEHPKHHQ---ERFTIGYLEHHHHHH  227 (227)
T ss_dssp             HHSCCCCS---EEEEEECCSCCC---
T ss_pred             HhCccccC---cEEEEEeehhcccCC
Confidence            99988665   999999999988863

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.96  E-value=1.3e-27  Score=208.29  Aligned_cols=240  Identities=13%  Similarity=0.087  Sum_probs=172.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--cc-CCCeEEEEecCCCHHHHHHHHhc--cCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQ-SSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~-~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~  101 (303)
                      ++++|||||||||||++|+++|+ +.|++|++++|++....  .. ..+++++.+|+.|.+++.+++++  +|.|+|+++
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   98 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLL-ERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAA   98 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHH-HCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECce
Confidence            45799999999999999999999 67999999999764321  11 15788999999999999999998  888999987


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC-CccchHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK-SNNFYYV  180 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~-~~~~~y~  180 (303)
                      ..... +..++ + +++|+.++.+++++|.+..  ..+++++|+..+|+....   .... +++|++  .|. .+   |+
T Consensus        99 ~~~~~-~~~~~-~-~~~N~~~~~~l~~a~~~~~--~~~iV~~SS~~~~g~~~~---~~~~-~~~E~~--~p~~~~---Y~  164 (333)
T 2q1w_A           99 SYKDP-DDWYN-D-TLTNCVGGSNVVQAAKKNN--VGRFVYFQTALCYGVKPI---QQPV-RLDHPR--NPANSS---YA  164 (333)
T ss_dssp             CCSCT-TCHHH-H-HHHHTHHHHHHHHHHHHTT--CSEEEEEEEGGGGCSCCC---SSSB-CTTSCC--CCTTCH---HH
T ss_pred             ecCCC-ccCCh-H-HHHHHHHHHHHHHHHHHhC--CCEEEEECcHHHhCCCcc---cCCC-CcCCCC--CCCCCc---hH
Confidence            64332 22333 2 8999999999999998763  445666666557751100   0012 567766  334 55   99


Q ss_pred             HHHHHHHHhcCC--cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHH
Q 042242          181 LEDLLKEKLAGK--VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQH  258 (303)
Q Consensus       181 ~~k~~~e~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~  258 (303)
                      .+|...|..-..  .+++++||+++||++..  ..+...+  ...+..  +.++. .+      ....++++++|+|+++
T Consensus       165 ~sK~~~E~~~~~s~~~~~ilR~~~v~gp~~~--~~~~~~~--~~~~~~--~~~~~-~~------~~~~~~i~v~Dva~ai  231 (333)
T 2q1w_A          165 ISKSANEDYLEYSGLDFVTFRLANVVGPRNV--SGPLPIF--FQRLSE--GKKCF-VT------KARRDFVFVKDLARAT  231 (333)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEESEEESTTCC--SSHHHHH--HHHHHT--TCCCE-EE------ECEECEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhCCeEEEeeceEECcCCc--CcHHHHH--HHHHHc--CCeee-CC------CceEeeEEHHHHHHHH
Confidence            998888743211  27899999999997621  1122221  111222  22222 12      4556789999999999


Q ss_pred             HHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          259 IWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       259 ~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      +.++..+.  +   ++||+++++.+|+.|+++.+++.+|.+
T Consensus       232 ~~~~~~~~--g---~~~~v~~~~~~s~~e~~~~i~~~~g~~  267 (333)
T 2q1w_A          232 VRAVDGVG--H---GAYHFSSGTDVAIKELYDAVVEAMALP  267 (333)
T ss_dssp             HHHHTTCC--C---EEEECSCSCCEEHHHHHHHHHHHTTCS
T ss_pred             HHHHhcCC--C---CEEEeCCCCCccHHHHHHHHHHHhCCC
Confidence            99987764  3   899999999999999999999999986

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.96  E-value=9.5e-29  Score=213.15  Aligned_cols=242  Identities=12%  Similarity=0.024  Sum_probs=161.5

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCccccc-cCCCeEEEEecCCCHHHHHHHHhc-----cCceeEEeec
Q 042242           30 VAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITAI-QSSSYCFISCDLLNPLDIKRKLTL-----LEDVTHIFWV  102 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~-----~~~V~~~~~~  102 (303)
                      +|||||||||||++|+++|+ +.| ++|++++|.+..... ...++. +.+|+.|.+.+..++++     +|.|+|+++.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~   78 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALN-DKGITDILVVDNLKDGTKFVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC   78 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHH-TTTCCCEEEEECCSSGGGGHHHHTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred             CEEEEcCccHHHHHHHHHHH-HCCCcEEEEEccCCCCchhhhcCcce-eccccccHHHHHHHHhccccCCCcEEEECccc
Confidence            58999999999999999999 678 899999998754311 112333 67899999999999985     7889999775


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHH
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLE  182 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~  182 (303)
                      ...  ...++.+.+++|+.++.+++++|++.+.   +++++|+..+|+...       ..+++|+++..|.++   |+.+
T Consensus        79 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~---~~v~~SS~~v~g~~~-------~~~~~E~~~~~p~~~---Y~~s  143 (310)
T 1eq2_A           79 SST--TEWDGKYMMDNNYQYSKELLHYCLEREI---PFLYASSAATYGGRT-------SDFIESREYEKPLNV---YGYS  143 (310)
T ss_dssp             CCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC---CEEEEEEGGGGTTCC-------SCBCSSGGGCCCSSH---HHHH
T ss_pred             ccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeeHHHhCCCC-------CCCCCCCCCCCCCCh---hHHH
Confidence            433  2223344899999999999999998632   555555555775431       336778877666666   8888


Q ss_pred             HHHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhh-cccCccHHHH
Q 042242          183 DLLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEY-CLDGSDSRLV  254 (303)
Q Consensus       183 k~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~  254 (303)
                      |...|     +.... ++++++||+.+||++..........+..+.. +.+  +.++...+..    .. ..++++++|+
T Consensus       144 K~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g----~~~~~~~i~v~Dv  217 (310)
T 1eq2_A          144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNN--GESPKLFEGS----ENFKRDFVYVGDV  217 (310)
T ss_dssp             HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------------CBCEEEHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHc--CCCcEEecCC----CcceEccEEHHHH
Confidence            77776     22322 8999999999999754311111011111111 222  3343333332    45 6789999999


Q ss_pred             HHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          255 AEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       255 a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      |++++.++..+.  +   ++||+++++.+|+.|+++.+++.+|.+
T Consensus       218 a~~~~~~~~~~~--~---~~~~i~~~~~~s~~e~~~~i~~~~g~~  257 (310)
T 1eq2_A          218 ADVNLWFLENGV--S---GIFNLGTGRAESFQAVADATLAYHKKG  257 (310)
T ss_dssp             HHHHHHHHHHCC--C---EEEEESCSCCBCHHHHHHHC-------
T ss_pred             HHHHHHHHhcCC--C---CeEEEeCCCccCHHHHHHHHHHHcCCC
Confidence            999999987764  3   799999999999999999999999976

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.96  E-value=5e-28  Score=216.29  Aligned_cols=253  Identities=17%  Similarity=0.107  Sum_probs=172.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------------------------ccCCCeEEEEecCCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------------------------IQSSSYCFISCDLLN   82 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------------------------~~~~~~~~~~~D~~~   82 (303)
                      .+++|||||||||||++|+++|+ +.|++|++++|......                        ....+++++.+|+.|
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d   88 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLS-KKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   88 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHH-hCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence            35799999999999999999999 68999999988532210                        013578899999999


Q ss_pred             HHHHHHHHhc--cCceeEEeecccccC---ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCc
Q 042242           83 PLDIKRKLTL--LEDVTHIFWVTWASQ---FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPE  157 (303)
Q Consensus        83 ~~~l~~~~~~--~~~V~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g  157 (303)
                      .+++.+++++  +|.|+|+|+......   ......+.+++|+.++.+++++|++... ..+++++|+..+|+...    
T Consensus        89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~-~~~~V~~SS~~vyg~~~----  163 (404)
T 1i24_A           89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGE-ECHLVKLGTMGEYGTPN----  163 (404)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEECCGGGGCCCS----
T ss_pred             HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCC-CcEEEEeCcHHHhCCCC----
Confidence            9999999998  888999987543211   1222234789999999999999987632 13667777666775432    


Q ss_pred             ccccCCcCcC--------------CCCCCCCccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCc-----
Q 042242          158 EKQVRFYDEE--------------CPRVSKSNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSL-----  211 (303)
Q Consensus       158 ~~~~~~~~e~--------------~~~~p~~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~-----  211 (303)
                          .++.|+              .+..|.++   |+.+|...|.     ..  + ++++++||+.|||++....     
T Consensus       164 ----~~~~E~~~~~~~~~~~~~~~~~~~~~~~---Y~~sK~~~e~~~~~~~~~~g-i~~~ivrp~~v~Gp~~~~~~~~~~  235 (404)
T 1i24_A          164 ----IDIEEGYITITHNGRTDTLPYPKQASSF---YHLSKVHDSHNIAFTCKAWG-IRATDLNQGVVYGVKTDETEMHEE  235 (404)
T ss_dssp             ----SCBCSSEEEEEETTEEEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHHC-CEEEEEEECEEECSCCTTGGGSGG
T ss_pred             ----CCCCccccccccccccccccCCCCCCCh---hHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeCCCCCccccccc
Confidence                233443              23333444   8888887662     12  4 9999999999999754210     


Q ss_pred             ----c--c-h-hhHHHHHHH-HhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          212 ----Y--N-F-LGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       212 ----~--~-~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                          .  . . ...+..+.. +..  +.++.+.|..    .+..++++++|+|++++.++..+...+ ..++||+++ +.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~g~g----~~~~~~i~v~Dva~a~~~~l~~~~~~g-~~~~yni~~-~~  307 (404)
T 1i24_A          236 LRNRLDYDAVFGTALNRFCVQAAV--GHPLTVYGKG----GQTRGYLDIRDTVQCVEIAIANPAKAG-EFRVFNQFT-EQ  307 (404)
T ss_dssp             GCCCCCCSTTTCCHHHHHHHHHHH--TCCEEEETTS----CCEEEEEEHHHHHHHHHHHHHSCCCTT-CEEEEEECS-EE
T ss_pred             cccccccccchhhHHHHHHHHHHc--CCeeEEeCCC----CceECcEEHHHHHHHHHHHHhCcccCC-CceEEEECC-CC
Confidence                0  0 0 011111111 222  4454444432    455678999999999999987764321 015999998 88


Q ss_pred             ccHHhhHHHHHHH---hcccCC
Q 042242          283 FTWKEIWPSIGKK---FGVKVP  301 (303)
Q Consensus       283 ~s~~e~~~~i~~~---~g~~~~  301 (303)
                      +|+.|+++.+++.   +|.+.+
T Consensus       308 ~s~~e~~~~i~~~~~~~g~~~~  329 (404)
T 1i24_A          308 FSVNELASLVTKAGSKLGLDVK  329 (404)
T ss_dssp             EEHHHHHHHHHHHHHTTTCCCC
T ss_pred             CcHHHHHHHHHHHHHhhCCCcc
Confidence            9999999999998   777653

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.96  E-value=1.2e-27  Score=211.45  Aligned_cols=248  Identities=16%  Similarity=0.141  Sum_probs=174.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc---ccc---------CCCeEEEEecCCCHHHHHHHHhc--cC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT---AIQ---------SSSYCFISCDLLNPLDIKRKLTL--LE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~~~---------~~~~~~~~~D~~~~~~l~~~~~~--~~   94 (303)
                      |+|||||||||||++++++|+ ..|++|++++|++...   ...         ..+++++.+|++|.+++.+++++  +|
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLL-EKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence            689999999999999999999 5799999999976531   110         24688899999999999999987  47


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC-CccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-ALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      .|+|+++.........++.+.+++|+.++.++++++.+... +-.+++++|+..+|+...       ..+++|+++..|.
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~-------~~~~~E~~~~~~~  153 (372)
T 1db3_A           81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ-------EIPQKETTPFYPR  153 (372)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC-------SSSBCTTSCCCCC
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCC-------CCCCCccCCCCCC
Confidence            79999876443333334445789999999999999987631 114566666666775431       3467888776666


Q ss_pred             CccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCC-ceeeCCchhhhhhh
Q 042242          174 SNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNL-PFVFGGTREIWEEY  244 (303)
Q Consensus       174 ~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~~~  244 (303)
                      ++   |+.+|...|.     ..  + ++++++|++.+||++..... ....+..+.. +.+  +. +....|..    .+
T Consensus       154 ~~---Y~~sK~~~e~~~~~~~~~~~-~~~~~~r~~~~~gp~~~~~~-~~~~~~~~~~~~~~--g~~~~~~~g~~----~~  222 (372)
T 1db3_A          154 SP---YAVAKLYAYWITVNYRESYG-MYACNGILFNHESPRRGETF-VTRKITRAIANIAQ--GLESCLYLGNM----DS  222 (372)
T ss_dssp             SH---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHT--TSCCCEEESCT----TC
T ss_pred             Ch---HHHHHHHHHHHHHHHHHHhC-CCeEEEEECCccCCCCCCcc-hhhHHHHHHHHHHc--CCCCceeecCC----Cc
Confidence            66   8888877762     22  4 89999999999997543211 0011111111 222  32 22233332    45


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ..++++++|+|++++.++..+.     +++||+++++.+|+.|+++.+++.+|.+.
T Consensus       223 ~~~~i~v~Dva~a~~~~~~~~~-----~~~~ni~~~~~~s~~e~~~~i~~~~g~~~  273 (372)
T 1db3_A          223 LRDWGHAKDYVKMQWMMLQQEQ-----PEDFVIATGVQYSVRQFVEMAAAQLGIKL  273 (372)
T ss_dssp             EECCEEHHHHHHHHHHTTSSSS-----CCCEEECCCCCEEHHHHHHHHHHTTTEEE
T ss_pred             eeeeeEHHHHHHHHHHHHhcCC-----CceEEEcCCCceeHHHHHHHHHHHhCCCc
Confidence            6789999999999999887653     26899999999999999999999998753

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.96  E-value=1.5e-27  Score=208.25  Aligned_cols=258  Identities=14%  Similarity=0.074  Sum_probs=173.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--c------cCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--I------QSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~------~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      ++|||||||||||++++++|+ +.|++|++++|......  .      ...+++++.+|++|.+++.+++++  +|.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih   79 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLL-QNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEE
Confidence            379999999999999999999 68999999987533211  0      124678899999999999999975  678999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC-CCccc
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS-KSNNF  177 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p-~~~~~  177 (303)
                      +|+..........+.+.+++|+.++.++++++++..  ..+++++|+..+|+..       ...+++|+.+..| ..+  
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~SS~~~~g~~-------~~~~~~e~~~~~~~~~~--  148 (338)
T 1udb_A           80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNFIFSSSATVYGDN-------PKIPYVESFPTGTPQSP--  148 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEEEGGGGCSC-------CSSSBCTTSCCCCCSSH--
T ss_pred             CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEEccHHHhCCC-------CCCCcCcccCCCCCCCh--
Confidence            987533222223344578999999999999998763  3455555555577543       1345777766543 445  


Q ss_pred             hHHHHHHHHHH-----h-cC-CcceEEecCCceeecCCCCcc-----chhh-HHHHHHHHhhhCCCceeeCCch---hhh
Q 042242          178 YYVLEDLLKEK-----L-AG-KVAWSVHRPGLLLGSSHRSLY-----NFLG-CLCVYGAVCKHLNLPFVFGGTR---EIW  241 (303)
Q Consensus       178 ~y~~~k~~~e~-----~-~~-~~~~~ilRp~~v~G~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~g~~---~~~  241 (303)
                       |+.+|...|.     . .. .++++++||+++||+.+...+     .... ..........+.+.++...|..   ...
T Consensus       149 -Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  227 (338)
T 1udb_A          149 -YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG  227 (338)
T ss_dssp             -HHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred             -HHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCC
Confidence             8888877762     1 22 189999999999997431100     0000 1111112222223333332210   001


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                       .+..++++++|+|++++.++..+... .++++||+++++.+|+.|+++.+++.+|++.+
T Consensus       228 -~~~~~~i~v~Dva~a~~~~l~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~  285 (338)
T 1udb_A          228 -TGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVN  285 (338)
T ss_dssp             -SCEECEEEHHHHHHHHHHHHHHHTTC-CEEEEEEESCSCCEEHHHHHHHHHHHHTSCCC
T ss_pred             -ceeeeeEEHHHHHHHHHHHHhhhhcc-CCCcEEEecCCCceeHHHHHHHHHHHhCCCCc
Confidence             45678899999999999887653211 11268999999999999999999999998754

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.96  E-value=2.6e-27  Score=207.20  Aligned_cols=245  Identities=15%  Similarity=0.096  Sum_probs=167.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ++++|||||||||||++|+++|+ ..|++|++++|......      ....+++++.+|+.+..     +.++|.|+|++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vih~A   99 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL-----YIEVDQIYHLA   99 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCC-----CCCCSEEEECC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHH-HCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChh-----hcCCCEEEECc
Confidence            45799999999999999999999 57999999999754311      11357889999998853     56788899997


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC--CCCCccch
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR--VSKSNNFY  178 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~--~p~~~~~~  178 (303)
                      +.........++.+.+++|+.++.+++++|++.+.   +++++|+..+|+...       ..+++|+...  .|..|...
T Consensus       100 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~---~~v~~SS~~v~g~~~-------~~~~~E~~~~~~~~~~~~~~  169 (343)
T 2b69_A          100 SPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA---RLLLASTSEVYGDPE-------VHPQSEDYWGHVNPIGPRAC  169 (343)
T ss_dssp             SCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC---EEEEEEEGGGGBSCS-------SSSBCTTCCCBCCSSSTTHH
T ss_pred             cccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC---cEEEECcHHHhCCCC-------CCCCcccccccCCCCCCCCc
Confidence            75432211223345789999999999999988643   455555555775432       2345555311  11223334


Q ss_pred             HHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCc-cchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCcc
Q 042242          179 YVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSL-YNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       179 y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (303)
                      |+.+|...|.     .  .+ ++++++||+.+||++.... ......+  ...+.+  +.++.+.+..    ....++++
T Consensus       170 Y~~sK~~~E~~~~~~~~~~~-~~~~ilrp~~v~G~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~----~~~~~~v~  240 (343)
T 2b69_A          170 YDEGKRVAETMCYAYMKQEG-VEVRVARIFNTFGPRMHMNDGRVVSNF--ILQALQ--GEPLTVYGSG----SQTRAFQY  240 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-CCEEEEEECCEECTTCCTTCCCHHHHH--HHHHHH--TCCEEEESSS----CCEEECEE
T ss_pred             hHHHHHHHHHHHHHHHHHhC-CcEEEEEEcceeCcCCCCCcccHHHHH--HHHHHc--CCCceEcCCC----CeEEeeEe
Confidence            8888777662     2  24 9999999999999754321 1111111  111222  3444443432    45567899


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++|+|++++.++..+.     +++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       241 v~Dva~a~~~~~~~~~-----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  286 (343)
T 2b69_A          241 VSDLVNGLVALMNSNV-----SSPVNLGNPEEHTILEFAQLIKNLVGSGSE  286 (343)
T ss_dssp             HHHHHHHHHHHHTSSC-----CSCEEESCCCEEEHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHhcCC-----CCeEEecCCCCCcHHHHHHHHHHHhCCCCC
Confidence            9999999998886542     268999999999999999999999998653

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.95  E-value=2.6e-27  Score=207.03  Aligned_cols=255  Identities=15%  Similarity=0.010  Sum_probs=176.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCC-------CeEEEEecCCccccc-cCCCeEEEEecCCCHHHHHHHHh-ccCce
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTAN-------WKVYGIARKPEITAI-QSSSYCFISCDLLNPLDIKRKLT-LLEDV   96 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g-------~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~-~~~~V   96 (303)
                      +++|+||||||+||||++|+++|+ ..|       ++|++++|++..... ...+++++.+|+.|.+++.++++ ++|.|
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~-~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~v   90 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLV-KDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPDVI   90 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHH-HHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCSEE
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHH-hcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCCEE
Confidence            356799999999999999999999 567       899999998654321 23468889999999999999995 78889


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC---CccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK---ALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      +|+|+.... .+..+..+.+++|+.++.+++++|++...   ...+++++|+..+|+...       ..+++|+++..|.
T Consensus        91 ih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~-------~~~~~E~~~~~~~  162 (342)
T 2hrz_A           91 FHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPL-------PYPIPDEFHTTPL  162 (342)
T ss_dssp             EECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSC-------CSSBCTTCCCCCS
T ss_pred             EECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCC-------CCCcCCCCCCCCc
Confidence            999875421 12233445789999999999999987531   145666666666775431       3467888877666


Q ss_pred             CccchHHHHHHHHH-----HhcCC-cceEEecCCceee-cCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhc
Q 042242          174 SNNFYYVLEDLLKE-----KLAGK-VAWSVHRPGLLLG-SSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       174 ~~~~~y~~~k~~~e-----~~~~~-~~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                      .+   |+.+|...|     +.... ++++++|++.+|| ++...... ...+..+.. ..  .+.+..+++..    ...
T Consensus       163 ~~---Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~----~~~  232 (342)
T 2hrz_A          163 TS---YGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAA-SGFFSNILREPL--VGQEAVLPVPE----SIR  232 (342)
T ss_dssp             SH---HHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSG-GGHHHHHHHHHH--TTCCEEECSCT----TCE
T ss_pred             ch---HHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchh-HHHHHHHHHHHh--cCCCeeccCCC----ccc
Confidence            66   888877776     23333 8899999999998 44321110 011111111 22  24444444432    234


Q ss_pred             ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          246 LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      .++++++|+|++++.++..+......+++||++ ++.+|+.|+++.+++.+|.+.
T Consensus       233 ~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~  286 (342)
T 2hrz_A          233 HWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKA  286 (342)
T ss_dssp             EEEECHHHHHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHH
T ss_pred             eeeEehHHHHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCccc
Confidence            457899999999999887653200013799996 467999999999999998753

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.95  E-value=6.3e-27  Score=221.45  Aligned_cols=253  Identities=15%  Similarity=0.228  Sum_probs=180.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHH-HHHHHhccCceeEEeecc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLD-IKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~-l~~~~~~~~~V~~~~~~~  103 (303)
                      ++++|||||||||||++|+++|++..|++|++++|++....  ....+++++.+|+.|.++ +.++++++|.|+|+|+..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~  393 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA  393 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEECCCCC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhcCCCEEEECceec
Confidence            45799999999999999999999434899999999876532  124578999999999765 788889999999998754


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC---C-CCccchH
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV---S-KSNNFYY  179 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~---p-~~~~~~y  179 (303)
                      .......++.+.+++|+.++.+++++|.+.+   .+++++|+..+|+...       ..+++|+++..   | ..|...|
T Consensus       394 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~r~V~~SS~~vyg~~~-------~~~~~E~~~~~~~~p~~~p~~~Y  463 (660)
T 1z7e_A          394 TPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSEVYGMCS-------DKYFDEDHSNLIVGPVNKPRWIY  463 (660)
T ss_dssp             CTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGGGGBTCC-------SSSBCTTTCCEEECCTTCTTHHH
T ss_pred             CccccccCHHHHHHhhhHHHHHHHHHHHHhC---CEEEEEecHHHcCCCC-------CcccCCCccccccCcccCCCCCc
Confidence            3322233445588999999999999998764   5777777766775432       34567776431   1 1233348


Q ss_pred             HHHHHHHHH-----h--cCCcceEEecCCceeecCCCCc-------cchhhHHHHHHHHhhhCCCceeeCCchhhhhhhc
Q 042242          180 VLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSL-------YNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       180 ~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                      +.+|...|.     .  .+ ++++++||+.+||++....       ......+  ...+.+  +.++...+..    ...
T Consensus       464 ~~sK~~~E~~~~~~~~~~g-i~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~--~~~~~~--g~~~~~~g~g----~~~  534 (660)
T 1z7e_A          464 SVSKQLLDRVIWAYGEKEG-LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQL--ILNLVE--GSPIKLIDGG----KQK  534 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CCEEEEEECSEESTTSSCHHHHTTTCSCHHHHH--HHHHHH--TCCEEEEGGG----CCE
T ss_pred             HHHHHHHHHHHHHHHHHcC-CCEEEECCCcccCCCccccccccccccchHHHH--HHHHHc--CCCcEEeCCC----CeE
Confidence            888877762     1  24 9999999999999754310       1111111  111222  4455444433    456


Q ss_pred             ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC-CccHHhhHHHHHHHhccc
Q 042242          246 LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP-RFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~-~~s~~e~~~~i~~~~g~~  299 (303)
                      .++++++|+|++++.++..+... ..|++||+++++ .+|+.|+++.+.+.+|.+
T Consensus       535 ~~~i~v~Dva~ai~~~l~~~~~~-~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~  588 (660)
T 1z7e_A          535 RCFTDIRDGIEALYRIIENAGNR-CDGEIINIGNPENEASIEELGEMLLASFEKH  588 (660)
T ss_dssp             EECEEHHHHHHHHHHHHHCGGGT-TTTEEEEECCGGGEEEHHHHHHHHHHHHHHC
T ss_pred             EEEEEHHHHHHHHHHHHhCcccc-CCCeEEEECCCCCCcCHHHHHHHHHHHhcCC
Confidence            77899999999999988765411 124899999986 899999999999999875

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.95  E-value=9.9e-28  Score=215.99  Aligned_cols=248  Identities=13%  Similarity=0.041  Sum_probs=167.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------------------ccCCCeEEEEecCCCHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------------------IQSSSYCFISCDLLNPLDI   86 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------------------~~~~~~~~~~~D~~~~~~l   86 (303)
                      ..+++|||||||||||++|+++|+ ..|++|++++|++....                   ....+++++.+|+.|.+.+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQ-GYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHT-TTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHH-cCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            345799999999999999999998 78999999999987210                   1135899999999998877


Q ss_pred             HHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           87 KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        87 ~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      . .+.++|.|+|+++.....   ....+.+++|+.++.+++++|.+..   .+++++|+..+ +....  +.....++.|
T Consensus       146 ~-~~~~~d~Vih~A~~~~~~---~~~~~~~~~Nv~g~~~l~~aa~~~~---~~~v~~SS~~~-G~~~~--~~~~~~~~~E  215 (427)
T 4f6c_A          146 V-LPENMDTIIHAGARTDHF---GDDDEFEKVNVQGTVDVIRLAQQHH---ARLIYVSTISV-GTYFD--IDTEDVTFSE  215 (427)
T ss_dssp             C-CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHHTT---CEEEEEEEGGG-GSEEC--SSCSCCEECT
T ss_pred             C-CcCCCCEEEECCcccCCC---CCHHHHHHHHHHHHHHHHHHHHhcC---CcEEEECchHh-CCCcc--CCCCCccccc
Confidence            7 667788899997754322   2233478999999999999999843   44555554334 22111  0012557888


Q ss_pred             CCCCCCCCccchHHHHHHHHHH-----h-cCCcceEEecCCceeecCCCCcc--chhh-HHHHHHH-HhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKEK-----L-AGKVAWSVHRPGLLLGSSHRSLY--NFLG-CLCVYGA-VCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e~-----~-~~~~~~~ilRp~~v~G~~~~~~~--~~~~-~~~~~~~-~~~~~~~~~~~~g  236 (303)
                      +++..+..+...|+.+|...|.     . .+ ++++++||+.|||+.....+  +... .+..+.. +.+  ..++.. +
T Consensus       216 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~g-~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~  291 (427)
T 4f6c_A          216 ADVYKGQLLTSPYTRSKFYSELKVLEAVNNG-LDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQ--LDCIGV-S  291 (427)
T ss_dssp             TCSCSSCCCCSHHHHHHHHHHHHHHHHHHTT-CCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHH--SSEEEH-H
T ss_pred             cccccCCCCCCchHHHHHHHHHHHHHHHHcC-CCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHh--cCCCCC-c
Confidence            8875443344458888887772     2 24 99999999999997644221  1000 1111111 111  222221 1


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      .   . ....++++++|+|+++++++..+. .   +++||+++++++++.|+++.+++ +|
T Consensus       292 ~---~-~~~~~~v~v~DvA~ai~~~~~~~~-~---g~~~~l~~~~~~s~~el~~~i~~-~g  343 (427)
T 4f6c_A          292 M---A-EMPVDFSFVDTTARQIVALAQVNT-P---QIIYHVLSPNKMPVKSLLECVKR-KE  343 (427)
T ss_dssp             H---H-TCEECCEEHHHHHHHHHHHTTSCC-C---CSEEEESCSCCEEHHHHHHHHHS-SC
T ss_pred             c---c-cceEEEeeHHHHHHHHHHHHcCCC-C---CCEEEecCCCCCcHHHHHHHHHH-cC
Confidence            1   1 566789999999999999988775 3   38999999999999999999997 44

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.95  E-value=5.9e-27  Score=202.64  Aligned_cols=243  Identities=14%  Similarity=0.084  Sum_probs=170.2

Q ss_pred             EEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--ccCceeEEeeccccc
Q 042242           30 VAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--LLEDVTHIFWVTWAS  106 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~~~~~~~~~  106 (303)
                      +|||||||||||++|+++|++. .|++|++++|++...    .+++++.+|+.|.+++.++++  ++|.|+|+++.... 
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~-   75 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT----GGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSA-   75 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC----TTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHH-
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc----cCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCC-
Confidence            5899999999999999999943 389999999976542    257789999999999999998  67889999765321 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      ....++.+.+++|+.++.+++++|++.+  ..+++++|+..+|+....      ..+..|+.+..|.++   |+.+|...
T Consensus        76 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~~v~~SS~~~~~~~~~------~~~~~e~~~~~p~~~---Y~~sK~~~  144 (317)
T 3ajr_A           76 KGEKDPALAYKVNMNGTYNILEAAKQHR--VEKVVIPSTIGVFGPETP------KNKVPSITITRPRTM---FGVTKIAA  144 (317)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCEEEEEEEGGGCCTTSC------SSSBCSSSCCCCCSH---HHHHHHHH
T ss_pred             ccccChHHHhhhhhHHHHHHHHHHHHcC--CCEEEEecCHHHhCCCCC------CCCccccccCCCCch---HHHHHHHH
Confidence            1123344588999999999999998763  446666666667754311      234667766655566   89888777


Q ss_pred             HH-----h--cCCcceEEecCCceeecCCCCc---cchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHH
Q 042242          187 EK-----L--AGKVAWSVHRPGLLLGSSHRSL---YNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAE  256 (303)
Q Consensus       187 e~-----~--~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~  256 (303)
                      |.     .  .+ ++++++||+.+||+.....   .++...  .+....+  +.++...+..    ....++++++|+|+
T Consensus       145 e~~~~~~~~~~~-~~~~~lR~~~~~g~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~----~~~~~~i~v~Dva~  215 (317)
T 3ajr_A          145 ELLGQYYYEKFG-LDVRSLRYPGIISYKAEPTAGTTDYAVE--IFYYAVK--REKYKCYLAP----NRALPMMYMPDALK  215 (317)
T ss_dssp             HHHHHHHHHHHC-CEEEEEEECEEECSSSCCCSCSSTHHHH--HHHHHHT--TCCEEECSCT----TCCEEEEEHHHHHH
T ss_pred             HHHHHHHHHhcC-CeEEEEecCcEeccCCCCCCcchhHHHH--HHHHHHh--CCCceeecCc----cceeeeeEHHHHHH
Confidence            62     1  24 9999999999999642111   111111  1111111  2233333332    44567889999999


Q ss_pred             HHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          257 QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       257 a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      +++.++..+......+++||+++ ..+|+.|+++.+.+.+|.
T Consensus       216 a~~~~l~~~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~  256 (317)
T 3ajr_A          216 ALVDLYEADRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPE  256 (317)
T ss_dssp             HHHHHHHCCGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCS
T ss_pred             HHHHHHhCCccccccCceEecCC-ccccHHHHHHHHHHHCCc
Confidence            99998877643211237999986 579999999999999883

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.95  E-value=1.3e-26  Score=220.95  Aligned_cols=265  Identities=14%  Similarity=0.124  Sum_probs=178.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh--ccCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT--LLED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~--~~~~   95 (303)
                      +++|+|||||||||||++|+++|+ +.|++|++++|+.....        ....+++++.+|+.|.+++.++++  ++|.
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~   87 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELI-ENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDS   87 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence            346899999999999999999999 67999999999764321        113578899999999999999998  6788


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |+|+|+..........+.+.+++|+.++.+++++|++..  ..+++++|+..+|+......   ...++.|+++..|..+
T Consensus        88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~--~~~iV~~SS~~vyg~~~~~~---~~~~~~E~~~~~p~~~  162 (699)
T 1z45_A           88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN--VSKFVFSSSATVYGDATRFP---NMIPIPEECPLGPTNP  162 (699)
T ss_dssp             EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEEEGGGGCCGGGST---TCCSBCTTSCCCCCSH
T ss_pred             EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEECcHHHhCCCcccc---ccCCccccCCCCCCCh
Confidence            999987543222223334578999999999999998763  34566666655775431100   1245677776655555


Q ss_pred             cchHHHHHHHHHH-----h----cCCcceEEecCCceeecCCCCccc-----hhh-HHHHHHHHhhhCCCceeeCCch--
Q 042242          176 NFYYVLEDLLKEK-----L----AGKVAWSVHRPGLLLGSSHRSLYN-----FLG-CLCVYGAVCKHLNLPFVFGGTR--  238 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~----~~~~~~~ilRp~~v~G~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~g~~--  238 (303)
                         |+.+|...|.     .    .+ ++++++||+++||+.+.....     ... .+.....+....+.++.+.|..  
T Consensus       163 ---Y~~sK~~~E~~~~~~~~~~~~g-~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  238 (699)
T 1z45_A          163 ---YGHTKYAIENILNDLYNSDKKS-WKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYD  238 (699)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHSTTS-CEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC-----
T ss_pred             ---HHHHHHHHHHHHHHHHHhccCC-CcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCccc
Confidence               8888877762     1    23 899999999999975421000     000 1111122222222343333310  


Q ss_pred             -hhhhhhcccCccHHHHHHHHHHHhcCcCC---cCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          239 -EIWEEYCLDGSDSRLVAEQHIWVATNDDI---SSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       239 -~~~~~~~~~~~~~~d~a~a~~~~~~~~~~---~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                       ... ....++++++|+|++++.++.....   ....+++||+++++.+|+.|+++.+++.+|++.+
T Consensus       239 ~~~g-~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~  304 (699)
T 1z45_A          239 SRDG-TPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLP  304 (699)
T ss_dssp             -CCS-SCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCC
T ss_pred             CCCC-CeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCC
Confidence             001 5667899999999999988764210   0011378999999999999999999999998765

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.95  E-value=1.2e-27  Score=219.98  Aligned_cols=247  Identities=13%  Similarity=0.029  Sum_probs=167.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-------------------cccCCCeEEEEecCCCHHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-------------------AIQSSSYCFISCDLLNPLDIKR   88 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-------------------~~~~~~~~~~~~D~~~~~~l~~   88 (303)
                      +++|||||||||||++|+++|+ ..|++|++++|++.+.                   .....+++++.+|+.+.+.+. 
T Consensus       150 ~~~VLVTGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  227 (508)
T 4f6l_B          150 LGNTLLTGATGFLGAYLIEALQ-GYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  227 (508)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTB-TTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred             CCeEEEECCccchHHHHHHHHH-hcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence            4799999999999999999997 7899999999988731                   112468999999999988777 


Q ss_pred             HHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           89 KLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        89 ~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .+.++|.|+|+++.....   ....+..+.|+.++.+++++|.+..+   +++++|+..+ +....  +.....++.|++
T Consensus       228 ~~~~~D~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~---~~v~iSS~~v-G~~~~--~~~~~~~~~E~~  298 (508)
T 4f6l_B          228 LPENMDTIIHAGARTDHF---GDDDEFEKVNVQGTVDVIRLAQQHHA---RLIYVSTISV-GTYFD--IDTEDVTFSEAD  298 (508)
T ss_dssp             CSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTC---EEEEEEESCT-TSEEC--TTCSCCEECTTC
T ss_pred             CccCCCEEEECCceecCC---CCHHHHhhhHHHHHHHHHHHHHhCCC---cEEEeCChhh-ccCCc--cCCcCccccccc
Confidence            667788899997754322   22233788999999999999997444   4444444333 11100  001245678887


Q ss_pred             CCCCCCccchHHHHHHHHHH-----h-cCCcceEEecCCceeecCCCCcc--chhh-HHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKEK-----L-AGKVAWSVHRPGLLLGSSHRSLY--NFLG-CLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e~-----~-~~~~~~~ilRp~~v~G~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +..+..+...|+.+|+..|.     . .+ ++++++||+.|||+.....+  +... .+..+..... ....+. .+.  
T Consensus       299 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~g-i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~--  373 (508)
T 4f6l_B          299 VYKGQLLTSPYTRSKFYSELKVLEAVNNG-LDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLL-QLDCIG-VSM--  373 (508)
T ss_dssp             SCSSBCCCSHHHHHHHHHHHHHHHHHHTT-CEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHT-TCSEEE-TTG--
T ss_pred             ccccccCCCcHHHHHHHHHHHHHHHHHcC-CCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHH-HcCCCC-CCc--
Confidence            75433343448888887762     2 24 99999999999997644221  1100 1111111111 122222 221  


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                       . ...+++++++|+|+++++++..+. .   +++||+++++++||.|+++.+++..
T Consensus       374 -g-~~~~~~v~v~DvA~ai~~~~~~~~-~---~~~~nl~~~~~~s~~el~~~i~~~~  424 (508)
T 4f6l_B          374 -A-EMPVDFSFVDTTARQIVALAQVNT-P---QIIYHVLSPNKMPVKSLLECVKRKE  424 (508)
T ss_dssp             -G-GSEEECEEHHHHHHHHHHHTTBCC-S---CSEEEESCSCEEEHHHHHHHHHSSC
T ss_pred             -c-CceEEEEcHHHHHHHHHHHHhCCC-C---CCEEEeCCCCCCCHHHHHHHHHHcC
Confidence             1 567789999999999999998775 3   3899999999999999999998653

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.95  E-value=4.7e-27  Score=214.24  Aligned_cols=256  Identities=13%  Similarity=0.079  Sum_probs=172.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcC--CCeEEEEecCCcccc--------c--------------cCCCeEEEEecCC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTA--NWKVYGIARKPEITA--------I--------------QSSSYCFISCDLL   81 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~--g~~V~~~~r~~~~~~--------~--------------~~~~~~~~~~D~~   81 (303)
                      ..+|+|||||||||||++|+++|++..  |++|++++|++....        .              ...+++++.+|++
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~  150 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS  150 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence            346899999999999999999999422  899999999876421        0              1258999999998


Q ss_pred             ------CHHHHHHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCC
Q 042242           82 ------NPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGL  155 (303)
Q Consensus        82 ------~~~~l~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~  155 (303)
                            |.+.+.++++++|.|||+++.... ....   +.+++|+.++.+++++|.+..  ..+++++|+..+|+..   
T Consensus       151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~---~~~~~Nv~gt~~ll~aa~~~~--~~~~V~iSS~~v~~~~---  221 (478)
T 4dqv_A          151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYH---ELFGPNVAGTAELIRIALTTK--LKPFTYVSTADVGAAI---  221 (478)
T ss_dssp             SGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCC---EEHHHHHHHHHHHHHHHTSSS--CCCEEEEEEGGGGTTS---
T ss_pred             CcccCCCHHHHHHHHcCCCEEEECccccCC-cCHH---HHHHHHHHHHHHHHHHHHhCC--CCeEEEEeehhhcCcc---
Confidence                  667899999999999999876543 2222   268999999999999998763  3344555554566443   


Q ss_pred             CcccccCCcCcCCCCCCCCc--------cchHHHHHHHHH-----Hh--cCCcceEEecCCceeecCCCCc-cchhhHHH
Q 042242          156 PEEKQVRFYDEECPRVSKSN--------NFYYVLEDLLKE-----KL--AGKVAWSVHRPGLLLGSSHRSL-YNFLGCLC  219 (303)
Q Consensus       156 ~g~~~~~~~~e~~~~~p~~~--------~~~y~~~k~~~e-----~~--~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~  219 (303)
                          ...++.|+++..|..+        ...|+.+|...|     +.  .+ ++++++||++|||++.... .+....+.
T Consensus       222 ----~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-i~~~ivRpg~v~G~~~~~g~~~~~~~~~  296 (478)
T 4dqv_A          222 ----EPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCA-LPVAVFRCGMILADTSYAGQLNMSDWVT  296 (478)
T ss_dssp             ----CTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHC-CCEEEEEECEEECCSSSSSCCCTTBHHH
T ss_pred             ----CCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhC-CCeEEEECceeeCCCccCCcCCHHHHHH
Confidence                1345666655432222        123888887777     22  24 9999999999999743211 11111111


Q ss_pred             HHHHHhhhCCC-ceeeCC---chhhhhhhcccCccHHHHHHHHHHHhcC----cCCcCCCCceEEeecCCC--ccHHhhH
Q 042242          220 VYGAVCKHLNL-PFVFGG---TREIWEEYCLDGSDSRLVAEQHIWVATN----DDISSTKGQAFNAINGPR--FTWKEIW  289 (303)
Q Consensus       220 ~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~d~a~a~~~~~~~----~~~~~~~g~~yni~~~~~--~s~~e~~  289 (303)
                      .+.......+. |..+.+   .+... +...++++++|+|++++.++..    +...   +++||+++++.  +|+.|++
T Consensus       297 ~l~~~~~~~g~~P~~~~~~~~~G~~~-~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~---~~~ynv~~~~~~~~s~~el~  372 (478)
T 4dqv_A          297 RMVLSLMATGIAPRSFYEPDSEGNRQ-RAHFDGLPVTFVAEAIAVLGARVAGSSLAG---FATYHVMNPHDDGIGLDEYV  372 (478)
T ss_dssp             HHHHHHHHHCEEESCSBCCCTTSCCC-CCCCCEEEHHHHHHHHHHHHHTTC-CCCCS---EEEEEESCCCCSSCSHHHHH
T ss_pred             HHHHHHHHcCcccccccccccccccc-cceeeeeeHHHHHHHHHHHHhhcccCCCCC---CceEEecCCCCCCcCHHHHH
Confidence            11111111122 212111   11111 4567889999999999998875    3333   48999999987  9999999


Q ss_pred             HHHHHHhcccC
Q 042242          290 PSIGKKFGVKV  300 (303)
Q Consensus       290 ~~i~~~~g~~~  300 (303)
                      +.+++. |.+.
T Consensus       373 ~~l~~~-g~~~  382 (478)
T 4dqv_A          373 DWLIEA-GYPI  382 (478)
T ss_dssp             HHHHHT-TCSC
T ss_pred             HHHHHc-CCCc
Confidence            999996 7664

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.95  E-value=2.2e-26  Score=196.28  Aligned_cols=216  Identities=14%  Similarity=0.109  Sum_probs=158.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcC--CCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTA--NWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~--g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      |+|||||||||||++++++|+ +.  |++|++++|++.+.. ....+++++.+|+.|.+++.++++++|.|+|+++... 
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~-~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~-   78 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLL-KKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHY-   78 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHT-TTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCS-
T ss_pred             CeEEEEcCCchHHHHHHHHHH-HhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCc-
Confidence            479999999999999999999 56  899999999876532 1235788999999999999999999999999976421 


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHH
Q 042242          106 SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLL  185 (303)
Q Consensus       106 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~  185 (303)
                        .       .+.|+.++.+++++|++.+  ..+++++|+...|           .      .    ..+   |+.+|..
T Consensus        79 --~-------~~~n~~~~~~l~~a~~~~~--~~~~v~~Ss~~~~-----------~------~----~~~---y~~~K~~  123 (287)
T 2jl1_A           79 --D-------NTLLIVQHANVVKAARDAG--VKHIAYTGYAFAE-----------E------S----IIP---LAHVHLA  123 (287)
T ss_dssp             --C-------HHHHHHHHHHHHHHHHHTT--CSEEEEEEETTGG-----------G------C----CST---HHHHHHH
T ss_pred             --C-------chHHHHHHHHHHHHHHHcC--CCEEEEECCCCCC-----------C------C----CCc---hHHHHHH
Confidence              1       1568999999999998763  3455555543232           0      0    123   8888877


Q ss_pred             HHHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHh
Q 042242          186 KEKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVA  262 (303)
Q Consensus       186 ~e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~  262 (303)
                      .|..   .+ ++++++||+.++|+..   ..++..     .+..  +......+      ....++++++|+|++++.++
T Consensus       124 ~E~~~~~~~-~~~~ilrp~~~~~~~~---~~~~~~-----~~~~--~~~~~~~~------~~~~~~i~~~Dva~~~~~~~  186 (287)
T 2jl1_A          124 TEYAIRTTN-IPYTFLRNALYTDFFV---NEGLRA-----STES--GAIVTNAG------SGIVNSVTRNELALAAATVL  186 (287)
T ss_dssp             HHHHHHHTT-CCEEEEEECCBHHHHS---SGGGHH-----HHHH--TEEEESCT------TCCBCCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHcC-CCeEEEECCEeccccc---hhhHHH-----HhhC--CceeccCC------CCccCccCHHHHHHHHHHHh
Confidence            7632   24 9999999998887421   111111     1111  22222223      44567899999999999998


Q ss_pred             cCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          263 TNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       263 ~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ..+...   |++||+++++.+|+.|+++.+++.+|++.+
T Consensus       187 ~~~~~~---g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  222 (287)
T 2jl1_A          187 TEEGHE---NKTYNLVSNQPWTFDELAQILSEVSGKKVV  222 (287)
T ss_dssp             TSSSCT---TEEEEECCSSCBCHHHHHHHHHHHHSSCCE
T ss_pred             cCCCCC---CcEEEecCCCcCCHHHHHHHHHHHHCCcce
Confidence            876433   489999999999999999999999998753

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.94  E-value=1.1e-25  Score=190.43  Aligned_cols=227  Identities=15%  Similarity=0.093  Sum_probs=167.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc--cCceeEEeeccccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL--LEDVTHIFWVTWAS  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~~~~~~~~~  106 (303)
                      |+|+||||||+||++++++|+ + |++|++++|++...    ++   +.+|+.|.+++.+++++  +|.|+|+++.....
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~~~----~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~   71 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-E-RHEVIKVYNSSEIQ----GG---YKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVD   71 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-T-TSCEEEEESSSCCT----TC---EECCTTSHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred             CEEEEECCCChhHHHHHHHHh-c-CCeEEEecCCCcCC----CC---ceeccCCHHHHHHHHHhcCCCEEEECCcccChh
Confidence            379999999999999999998 5 79999999987431    23   78999999999999987  78899998754332


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      ....+..+.+++|+.++.++++++++.+.   +++++|+..+|++.        ..++.|+++..|..+   |+.+|...
T Consensus        72 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~iv~~SS~~~~~~~--------~~~~~e~~~~~~~~~---Y~~sK~~~  137 (273)
T 2ggs_A           72 KCEIEKEKAYKINAEAVRHIVRAGKVIDS---YIVHISTDYVFDGE--------KGNYKEEDIPNPINY---YGLSKLLG  137 (273)
T ss_dssp             HHHHCHHHHHHHHTHHHHHHHHHHHHTTC---EEEEEEEGGGSCSS--------SCSBCTTSCCCCSSH---HHHHHHHH
T ss_pred             hhhhCHHHHHHHhHHHHHHHHHHHHHhCC---eEEEEecceeEcCC--------CCCcCCCCCCCCCCH---HHHHHHHH
Confidence            22334455899999999999999987643   55566665566443        236778777665555   99999988


Q ss_pred             HHh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          187 EKL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       187 e~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      |.. .. ++++++||+.+||  +..   +...+  ...+..  +.++...+      . ..++++++|+|++++.++..+
T Consensus       138 e~~~~~-~~~~~iR~~~v~G--~~~---~~~~~--~~~~~~--~~~~~~~~------~-~~~~~~~~dva~~i~~~~~~~  200 (273)
T 2ggs_A          138 ETFALQ-DDSLIIRTSGIFR--NKG---FPIYV--YKTLKE--GKTVFAFK------G-YYSPISARKLASAILELLELR  200 (273)
T ss_dssp             HHHHCC-TTCEEEEECCCBS--SSS---HHHHH--HHHHHT--TCCEEEES------C-EECCCBHHHHHHHHHHHHHHT
T ss_pred             HHHHhC-CCeEEEecccccc--ccH---HHHHH--HHHHHc--CCCEEeec------C-CCCceEHHHHHHHHHHHHhcC
Confidence            853 34 7899999999998  221   11111  111222  33444444      2 346889999999999988765


Q ss_pred             CCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          266 DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       266 ~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      .  +   ++||+++ +.+|+.|+++.+++.+|++.+
T Consensus       201 ~--~---g~~~i~~-~~~s~~e~~~~~~~~~g~~~~  230 (273)
T 2ggs_A          201 K--T---GIIHVAG-ERISRFELALKIKEKFNLPGE  230 (273)
T ss_dssp             C--C---EEEECCC-CCEEHHHHHHHHHHHTTCCSC
T ss_pred             c--C---CeEEECC-CcccHHHHHHHHHHHhCCChh
Confidence            3  2   5899999 999999999999999998754

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.94  E-value=2.3e-26  Score=192.33  Aligned_cols=233  Identities=14%  Similarity=0.067  Sum_probs=158.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~  104 (303)
                      +++++|+||||+|+||++++++|++.. |++|++++|++.+......+++++.+|+.|.+++.++++++|.|+|+++...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~   81 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVP   81 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccccc
Confidence            346899999999999999999999432 8999999998655332245788999999999999999999999999976532


Q ss_pred             ccC----------C---hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242          105 ASQ----------F---ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus       105 ~~~----------~---~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      ...          .   .....+.+++|+.++.++++++++..  ..+++++|+...|.               +..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~SS~~~~~---------------~~~~~~  144 (253)
T 1xq6_A           82 KMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG--VKHIVVVGSMGGTN---------------PDHPLN  144 (253)
T ss_dssp             EECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT--CSEEEEEEETTTTC---------------TTCGGG
T ss_pred             cccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC--CCEEEEEcCccCCC---------------CCCccc
Confidence            110          0   01111257899999999999998763  33555555432221               111111


Q ss_pred             CCCccchHHHHHHHHHHh-cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          172 SKSNNFYYVLEDLLKEKL-AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~~-~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                       .+....|..+|...|.. +.. ++++++||+.+||+..... .+...          ...++        + .....++
T Consensus       145 -~~~~~~y~~sK~~~e~~~~~~~i~~~~vrpg~v~~~~~~~~-~~~~~----------~~~~~--------~-~~~~~~~  203 (253)
T 1xq6_A          145 -KLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVR-ELLVG----------KDDEL--------L-QTDTKTV  203 (253)
T ss_dssp             -GGGGCCHHHHHHHHHHHHHTSSSCEEEEEECEEECSCSSSS-CEEEE----------STTGG--------G-GSSCCEE
T ss_pred             -cccchhHHHHHHHHHHHHHhCCCceEEEecceeecCCcchh-hhhcc----------CCcCC--------c-CCCCcEE
Confidence             11111267777777632 223 9999999999999643211 11000          01111        1 1123478


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCC---CccHHhhHHHHHHHhccc
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGP---RFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~---~~s~~e~~~~i~~~~g~~  299 (303)
                      +++|+|+++++++..+...   +++||+++++   .+|+.|+++.+++++|++
T Consensus       204 ~~~Dva~~~~~~~~~~~~~---g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~~  253 (253)
T 1xq6_A          204 PRADVAEVCIQALLFEEAK---NKAFDLGSKPEGTSTPTKDFKALFSQVTSRF  253 (253)
T ss_dssp             EHHHHHHHHHHHTTCGGGT---TEEEEEEECCTTTSCCCCCHHHHHHTCCCCC
T ss_pred             cHHHHHHHHHHHHcCcccc---CCEEEecCCCcCCCCCHHHHHHHHHHHhCCC
Confidence            8999999999998876543   4899999864   599999999999999974

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.94  E-value=5e-26  Score=192.15  Aligned_cols=220  Identities=13%  Similarity=0.042  Sum_probs=166.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS  106 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~  106 (303)
                      |+|+||||||||+||++|+++|+ +.|++|++++|++.+.  ...+++++.+|+.|.+++.++++++|.|+|+++..  .
T Consensus         1 M~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~--~   75 (267)
T 3ay3_A            1 MLNRLLVTGAAGGVGSAIRPHLG-TLAHEVRLSDIVDLGA--AEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVS--V   75 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHGGGGG-GTEEEEEECCSSCCCC--CCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCC--S
T ss_pred             CCceEEEECCCCHHHHHHHHHHH-hCCCEEEEEeCCCccc--cCCCccEEEccCCCHHHHHHHHcCCCEEEECCcCC--C
Confidence            35799999999999999999999 6789999999987542  23568899999999999999999999999997754  1


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      ....  .+.+++|+.++.++++++++.  ...+++++|+..+|+....      ..+++|+++..|..+   |+.+|...
T Consensus        76 ~~~~--~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS~~~~~~~~~------~~~~~E~~~~~~~~~---Y~~sK~~~  142 (267)
T 3ay3_A           76 ERPW--NDILQANIIGAYNLYEAARNL--GKPRIVFASSNHTIGYYPR------TTRIDTEVPRRPDSL---YGLSKCFG  142 (267)
T ss_dssp             CCCH--HHHHHHTHHHHHHHHHHHHHT--TCCEEEEEEEGGGSTTSBT------TSCBCTTSCCCCCSH---HHHHHHHH
T ss_pred             CCCH--HHHHHHHHHHHHHHHHHHHHh--CCCEEEEeCCHHHhCCCCC------CCCCCCCCCCCCCCh---HHHHHHHH
Confidence            2222  237899999999999999875  2446666666667754321      346888887766666   88887776


Q ss_pred             HH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          187 EK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       187 e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      |.     .... ++++++||+.+|+. +.                         .+      ....++++++|+|++++.
T Consensus       143 e~~~~~~~~~~gi~~~~lrp~~v~~~-~~-------------------------~~------~~~~~~~~~~dva~~~~~  190 (267)
T 3ay3_A          143 EDLASLYYHKFDIETLNIRIGSCFPK-PK-------------------------DA------RMMATWLSVDDFMRLMKR  190 (267)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECBCSSS-CC-------------------------SH------HHHHHBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEeceeecCC-CC-------------------------CC------CeeeccccHHHHHHHHHH
Confidence            62     2233 99999999999951 10                         00      222346789999999999


Q ss_pred             HhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++..+...+   .+||+.++...++.|+.+.  +.+|.++.
T Consensus       191 ~~~~~~~~~---~~~~~~~~~~~~~~d~~~~--~~lg~~p~  226 (267)
T 3ay3_A          191 AFVAPKLGC---TVVYGASANTESWWDNDKS--AFLGWVPQ  226 (267)
T ss_dssp             HHHSSCCCE---EEEEECCSCSSCCBCCGGG--GGGCCCCC
T ss_pred             HHhCCCCCc---eeEecCCCccccccCHHHH--HHcCCCCC
Confidence            888765322   6899998888899999887  88887654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.94  E-value=4.2e-26  Score=199.20  Aligned_cols=254  Identities=14%  Similarity=0.093  Sum_probs=169.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEE-EecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFI-SCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~-~~D~~~~~~l~~~~~~~~~   95 (303)
                      .+++++|||||||||||++|+++|+ +.|++|++++|+..+...        ...+++++ .+|++|.+++.++++++|.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLL-EHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            3456899999999999999999999 679999999997654210        02568888 7999999999999998999


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC-----
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR-----  170 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~-----  170 (303)
                      |+|+|+......   ++.+.+++|+.++.+++++|.+. ....+++++|+..+|+......   ...+++|++..     
T Consensus        87 vih~A~~~~~~~---~~~~~~~~n~~g~~~ll~~~~~~-~~~~~iv~~SS~~~~~~~~~~~---~~~~~~E~~~~~~~~~  159 (342)
T 1y1p_A           87 VAHIASVVSFSN---KYDEVVTPAIGGTLNALRAAAAT-PSVKRFVLTSSTVSALIPKPNV---EGIYLDEKSWNLESID  159 (342)
T ss_dssp             EEECCCCCSCCS---CHHHHHHHHHHHHHHHHHHHHTC-TTCCEEEEECCGGGTCCCCTTC---CCCEECTTCCCHHHHH
T ss_pred             EEEeCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEeccHHHhcCCCCCC---CCcccCccccCchhhh
Confidence            999987644332   23348999999999999999853 2345677777666664321100   01356666521     


Q ss_pred             --------CCCCccchHHHHHHHHHH-----hc--CC-cceEEecCCceeecCCCCccc--hhhHHHHHHHHhhhCCCce
Q 042242          171 --------VSKSNNFYYVLEDLLKEK-----LA--GK-VAWSVHRPGLLLGSSHRSLYN--FLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       171 --------~p~~~~~~y~~~k~~~e~-----~~--~~-~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~  232 (303)
                              .|..|...|+.+|...|.     ..  +. ++++++||+.+||+.......  ....+  ...+.+  +.+.
T Consensus       160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~--~~~~~~--~~~~  235 (342)
T 1y1p_A          160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGW--MMSLFN--GEVS  235 (342)
T ss_dssp             HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHH--HHHHHT--TCCC
T ss_pred             hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHH--HHHHHc--CCCc
Confidence                    112233448888887762     11  11 889999999999975432111  11111  111222  3332


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      .+.+.     ....++++++|+|++++.++..+...+   +.| ++.+..+|+.|+++.+.+.+|.+
T Consensus       236 ~~~~~-----~~~~~~v~v~Dva~a~~~~~~~~~~~g---~~~-~~~g~~~s~~e~~~~i~~~~~~~  293 (342)
T 1y1p_A          236 PALAL-----MPPQYYVSAVDIGLLHLGCLVLPQIER---RRV-YGTAGTFDWNTVLATFRKLYPSK  293 (342)
T ss_dssp             HHHHT-----CCSEEEEEHHHHHHHHHHHHHCTTCCS---CEE-EECCEEECHHHHHHHHHHHCTTS
T ss_pred             ccccc-----CCcCCEeEHHHHHHHHHHHHcCcccCC---ceE-EEeCCCCCHHHHHHHHHHHCCCc
Confidence            21111     123468899999999999887654332   444 45567899999999999999864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.94  E-value=2.2e-26  Score=188.70  Aligned_cols=206  Identities=17%  Similarity=0.162  Sum_probs=154.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCC-HHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLN-PLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~-~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      |+|+||||||+||++++++|+ +.|++|++++|++.+... ..+++++++|+.| .+++.++++++|.|+|+++..... 
T Consensus         1 M~ilItGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~-   77 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLS-TTDYQIYAGARKVEQVPQ-YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKS-   77 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHT-TSSCEEEEEESSGGGSCC-CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSS-
T ss_pred             CeEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCccchhh-cCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCC-
Confidence            389999999999999999999 689999999999765432 2689999999999 999999999999999997754311 


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                             .+++|+.++.++++++++..  ..+++++|+...|.          ..++.| .+..|..+   |+.+|...|
T Consensus        78 -------~~~~n~~~~~~l~~a~~~~~--~~~iv~~SS~~~~~----------~~~~~e-~~~~~~~~---Y~~sK~~~e  134 (219)
T 3dqp_A           78 -------LLKVDLYGAVKLMQAAEKAE--VKRFILLSTIFSLQ----------PEKWIG-AGFDALKD---YYIAKHFAD  134 (219)
T ss_dssp             -------CCCCCCHHHHHHHHHHHHTT--CCEEEEECCTTTTC----------GGGCCS-HHHHHTHH---HHHHHHHHH
T ss_pred             -------cEeEeHHHHHHHHHHHHHhC--CCEEEEECcccccC----------CCcccc-cccccccH---HHHHHHHHH
Confidence                   57889999999999998763  44666666543331          223444 22222333   888888777


Q ss_pred             Hh--cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcC
Q 042242          188 KL--AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATN  264 (303)
Q Consensus       188 ~~--~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~  264 (303)
                      ..  ... ++++++||+.+||+.....                    +.+ +      ....++++++|+|++++.++.+
T Consensus       135 ~~~~~~~~i~~~ilrp~~v~g~~~~~~--------------------~~~-~------~~~~~~i~~~Dva~~i~~~l~~  187 (219)
T 3dqp_A          135 LYLTKETNLDYTIIQPGALTEEEATGL--------------------IDI-N------DEVSASNTIGDVADTIKELVMT  187 (219)
T ss_dssp             HHHHHSCCCEEEEEEECSEECSCCCSE--------------------EEE-S------SSCCCCEEHHHHHHHHHHHHTC
T ss_pred             HHHHhccCCcEEEEeCceEecCCCCCc--------------------ccc-C------CCcCCcccHHHHHHHHHHHHhC
Confidence            33  233 9999999999999532211                    111 1      3345688999999999999988


Q ss_pred             cCCcCCCCceEEeecCCCccHHhhHHH
Q 042242          265 DDISSTKGQAFNAINGPRFTWKEIWPS  291 (303)
Q Consensus       265 ~~~~~~~g~~yni~~~~~~s~~e~~~~  291 (303)
                      +...+   ++||++++. .+++|+++.
T Consensus       188 ~~~~g---~~~~i~~g~-~~~~e~~~~  210 (219)
T 3dqp_A          188 DHSIG---KVISMHNGK-TAIKEALES  210 (219)
T ss_dssp             GGGTT---EEEEEEECS-EEHHHHHHT
T ss_pred             ccccC---cEEEeCCCC-ccHHHHHHH
Confidence            76444   899998875 899998763

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.94  E-value=3.7e-26  Score=199.40  Aligned_cols=253  Identities=16%  Similarity=0.139  Sum_probs=156.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c-cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I-QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~-~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      |+|+|||||||||||++|+++|+ +.||+|+++.|++....       . ...+++++.+|+.|.+++.++++++|.|+|
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih   86 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLL-QKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFH   86 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHH-HTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEE
Confidence            57899999999999999999999 68999999999765321       1 124688999999999999999999999999


Q ss_pred             EeecccccCChHHH-HHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccc-ccccccCCCcccccCCcCcCCCCC-----
Q 042242           99 IFWVTWASQFASDM-HKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMK-HYVSLQGLPEEKQVRFYDEECPRV-----  171 (303)
Q Consensus        99 ~~~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~~~e~~~~~-----  171 (303)
                      +|+....  ...++ .+.+++|+.++.+++++|.+.. ...+++++|+.. +|+....  +  ...+++|+++..     
T Consensus        87 ~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~r~V~~SS~~~~~~~~~~--~--~~~~~~E~~~~~~~~~~  159 (338)
T 2rh8_A           87 VATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAK-SVKRVILTSSAAAVTINQLD--G--TGLVVDEKNWTDIEFLT  159 (338)
T ss_dssp             ESSCCCC-----------CHHHHHHHHHHHHHHHHCT-TCCEEEEECCHHHHHHHHHT--C--SCCCCCTTTTTCC----
T ss_pred             eCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcC-CcCEEEEEecHHHeecCCcC--C--CCcccChhhccchhhcc
Confidence            9864321  11222 2378999999999999998763 245666666544 3322110  0  012455554211     


Q ss_pred             CCCc-cchHHH-----HHHHHHHhc--CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC-Cchhhhh
Q 042242          172 SKSN-NFYYVL-----EDLLKEKLA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG-GTREIWE  242 (303)
Q Consensus       172 p~~~-~~~y~~-----~k~~~e~~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~  242 (303)
                      |..| .+.|+.     |.++.++..  + ++++++||++|||++.......  .+........  +.+..++ +....+.
T Consensus       160 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-i~~~~lrp~~v~Gp~~~~~~~~--~~~~~~~~~~--g~~~~~~~~~~~~~~  234 (338)
T 2rh8_A          160 SAKPPTWGYPASKTLAEKAAWKFAEENN-IDLITVIPTLMAGSSLTSDVPS--SIGLAMSLIT--GNEFLINGMKGMQML  234 (338)
T ss_dssp             ---CCCCCCTTSCCHHHHHHHHHHHHHT-CCEEEEEECEEESCCSSSSCCH--HHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred             ccCCccchHHHHHHHHHHHHHHHHHHcC-CcEEEEeCCceECCCCCCCCCc--hHHHHHHHHc--CCccccccccccccc
Confidence            1111 112554     444443332  4 9999999999999754322111  1111111111  2221111 0000000


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      ....++++++|+|++++.++..+..    ++.||++++ .+|+.|+++.+.+.++
T Consensus       235 ~~~~~~i~v~Dva~a~~~~~~~~~~----~~~~~~~~~-~~s~~e~~~~l~~~~~  284 (338)
T 2rh8_A          235 SGSVSIAHVEDVCRAHIFVAEKESA----SGRYICCAA-NTSVPELAKFLSKRYP  284 (338)
T ss_dssp             HSSEEEEEHHHHHHHHHHHHHCTTC----CEEEEECSE-EECHHHHHHHHHHHCT
T ss_pred             cCcccEEEHHHHHHHHHHHHcCCCc----CCcEEEecC-CCCHHHHHHHHHHhCC
Confidence            1223689999999999998876532    257888764 5899999999998876

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.94  E-value=3.1e-25  Score=194.02  Aligned_cols=227  Identities=15%  Similarity=0.100  Sum_probs=163.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcC-CC-eEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTA-NW-KVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~-g~-~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +++|+||||||||+||++++++|+ +. |+ +|++++|++.+..     ....+++++.+|++|.+++.++++++|.|+|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~-~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVL-DTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHH-hhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            346899999999999999999999 46 86 9999999865432     1235789999999999999999999999999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      +|+..........+.+.+++|+.++.++++++.+.+  ..+++++|+...|                     .|.++   
T Consensus        98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~--v~~~V~~SS~~~~---------------------~p~~~---  151 (344)
T 2gn4_A           98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA--ISQVIALSTDKAA---------------------NPINL---  151 (344)
T ss_dssp             CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT--CSEEEEECCGGGS---------------------SCCSH---
T ss_pred             CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCCccC---------------------CCccH---
Confidence            987654332333445689999999999999999863  4566666553222                     12344   


Q ss_pred             HHHHHHHHHH-----hc---CC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCC-ceeeCCchhhhhhhccc
Q 042242          179 YVLEDLLKEK-----LA---GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNL-PFVFGGTREIWEEYCLD  247 (303)
Q Consensus       179 y~~~k~~~e~-----~~---~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~~~~~~  247 (303)
                      |+.+|...|.     ..   .. ++++++||++|||+...    ....   +.. +..  +. ++.+.. .    ....+
T Consensus       152 Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~----~i~~---~~~~~~~--g~~~~~i~~-~----~~~r~  217 (344)
T 2gn4_A          152 YGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS----VVPF---FKKLVQN--KASEIPITD-I----RMTRF  217 (344)
T ss_dssp             HHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTS----HHHH---HHHHHHH--TCCCEEESC-T----TCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCC----HHHH---HHHHHHc--CCCceEEeC-C----CeEEe
Confidence            8888877762     21   12 89999999999996432    1111   111 222  33 444432 1    33345


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      +++++|+|++++.++..+.    .|++||+.++ .+|+.|+++.+++.++.
T Consensus       218 ~i~v~D~a~~v~~~l~~~~----~g~~~~~~~~-~~s~~el~~~i~~~~~~  263 (344)
T 2gn4_A          218 WITLDEGVSFVLKSLKRMH----GGEIFVPKIP-SMKMTDLAKALAPNTPT  263 (344)
T ss_dssp             EECHHHHHHHHHHHHHHCC----SSCEEEECCC-EEEHHHHHHHHCTTCCE
T ss_pred             eEEHHHHHHHHHHHHhhcc----CCCEEecCCC-cEEHHHHHHHHHHhCCe
Confidence            7889999999999887652    2479998776 69999999999876643

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.93  E-value=3e-25  Score=187.40  Aligned_cols=219  Identities=11%  Similarity=0.056  Sum_probs=163.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS  106 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~  106 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|++.+..  ..+++++.+|++|.+++.++++++|.|+|+++..  .
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~-~~G~~V~~~~r~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~--~   76 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLA-PMAEILRLADLSPLDPA--GPNEECVQCDLADANAVNAMVAGCDGIVHLGGIS--V   76 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTG-GGEEEEEEEESSCCCCC--CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCC--S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-hcCCEEEEEecCCcccc--CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCc--C
Confidence            34789999999999999999999 68999999999876532  4678999999999999999999999999998763  2


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .....  +.+++|+.++.++++++++..  ..+++++|+...|+....      ..++.|+.+..|..+   |+.+|...
T Consensus        77 ~~~~~--~~~~~N~~g~~~l~~a~~~~~--~~~iv~~SS~~~~g~~~~------~~~~~e~~~~~~~~~---Y~~sK~~~  143 (267)
T 3rft_A           77 EKPFE--QILQGNIIGLYNLYEAARAHG--QPRIVFASSNHTIGYYPQ------TERLGPDVPARPDGL---YGVSKCFG  143 (267)
T ss_dssp             CCCHH--HHHHHHTHHHHHHHHHHHHTT--CCEEEEEEEGGGGTTSBT------TSCBCTTSCCCCCSH---HHHHHHHH
T ss_pred             cCCHH--HHHHHHHHHHHHHHHHHHHcC--CCEEEEEcchHHhCCCCC------CCCCCCCCCCCCCCh---HHHHHHHH
Confidence            22233  379999999999999998763  345566666556643321      446778777665666   99888876


Q ss_pred             HH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHH
Q 042242          187 EK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHI  259 (303)
Q Consensus       187 e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~  259 (303)
                      |.     .  .+ ++++++||+.|+|+...                          +      ....++++++|+++.+.
T Consensus       144 e~~~~~~a~~~g-~~~~~vr~~~v~~~~~~--------------------------~------~~~~~~~~~~d~a~~~~  190 (267)
T 3rft_A          144 ENLARMYFDKFG-QETALVRIGSCTPEPNN--------------------------Y------RMLSTWFSHDDFVSLIE  190 (267)
T ss_dssp             HHHHHHHHHHHC-CCEEEEEECBCSSSCCS--------------------------T------THHHHBCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CeEEEEEeecccCCCCC--------------------------C------CceeeEEcHHHHHHHHH
Confidence            62     2  23 89999999999984111                          1      11223567888898888


Q ss_pred             HHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          260 WVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       260 ~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      .++..+...+   .++++.++++.++.++...  +.+|.+++
T Consensus       191 ~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~--~~~g~~p~  227 (267)
T 3rft_A          191 AVFRAPVLGC---PVVWGASANDAGWWDNSHL--GFLGWKPK  227 (267)
T ss_dssp             HHHHCSCCCS---CEEEECCCCTTCCBCCGGG--GGGCCCCC
T ss_pred             HHHhCCCCCc---eEEEEeCCCCCCcccChhH--HHCCCCCC
Confidence            8887765433   6788888888888887543  67777654

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.93  E-value=2e-25  Score=193.35  Aligned_cols=244  Identities=16%  Similarity=0.103  Sum_probs=155.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec-CCcc---cc-c-cC----CCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIAR-KPEI---TA-I-QS----SSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~---~~-~-~~----~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      +|+|||||||||||++|+++|+ ..|++|++++| ++..   .. . ..    .+++++.+|++|.+++.++++++|.|+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLL-ENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHH-HCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            4789999999999999999999 68999999998 5422   10 0 11    246788999999999999999999999


Q ss_pred             EEeecccccCChHH-HHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccc-cccccCCCcccccCCcCcCCCCC----
Q 042242           98 HIFWVTWASQFASD-MHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKH-YVSLQGLPEEKQVRFYDEECPRV----  171 (303)
Q Consensus        98 ~~~~~~~~~~~~~~-~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~-y~~~~~~~g~~~~~~~~e~~~~~----  171 (303)
                      |+|+..  .....+ ..+.+++|+.++.+++++|.+. ....+++++|+... |+...      ...+++|+++..    
T Consensus        80 h~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~-~~~~~iV~~SS~~~~~~~~~------~~~~~~e~~~~~~~~~  150 (322)
T 2p4h_X           80 HTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNS-KTVKRFIYTSSGSAVSFNGK------DKDVLDESDWSDVDLL  150 (322)
T ss_dssp             ECCCCC----------CHHHHHHHHHHHHHHHHHTTC-SSCCEEEEEEEGGGTSCSSS------CCSEECTTCCCCHHHH
T ss_pred             EcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEeccHHHcccCCC------CCeecCCccccchhhh
Confidence            998532  111111 1237899999999999999876 12345555554432 32211      122455554221    


Q ss_pred             -CCCcc-chHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          172 -SKSNN-FYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       172 -p~~~~-~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                       |..|. +.|+.+|.+.|.     .... ++++++||+.|||+........  ..........  +.+..++.       
T Consensus       151 ~~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~--~~~~~~~~~~--g~~~~~~~-------  219 (322)
T 2p4h_X          151 RSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPD--SIEKALVLVL--GKKEQIGV-------  219 (322)
T ss_dssp             HHHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCH--HHHHHTHHHH--SCGGGCCE-------
T ss_pred             cccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCc--hHHHHHHHHh--CCCccCcC-------
Confidence             01111 138888877762     2212 9999999999999754322111  1111111111  22212221       


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      ...++++++|+|++++.++..+...    +.|| ++++.+|+.|+++.+++.++
T Consensus       220 ~~~~~i~v~Dva~a~~~~~~~~~~~----g~~~-~~~~~~s~~e~~~~i~~~~~  268 (322)
T 2p4h_X          220 TRFHMVHVDDVARAHIYLLENSVPG----GRYN-CSPFIVPIEEMSQLLSAKYP  268 (322)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHSCCCC----EEEE-CCCEEEEHHHHHHHHHHHCT
T ss_pred             CCcCEEEHHHHHHHHHHHhhCcCCC----CCEE-EcCCCCCHHHHHHHHHHhCC
Confidence            1126889999999999988765432    3498 56678999999999998774

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.93  E-value=1.7e-25  Score=195.20  Aligned_cols=246  Identities=13%  Similarity=0.139  Sum_probs=159.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----c-cC----CCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----I-QS----SSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~-~~----~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ++++||||||+||||++|+++|+ +.||+|++++|++....    . ..    .+++++.+|++|.+++.++++++|.|+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   82 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLL-ERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF   82 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            35799999999999999999999 68999999999865311    0 11    257889999999999999999999999


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccc-ccccccCCCcccccCCcCcCCCCCC----
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMK-HYVSLQGLPEEKQVRFYDEECPRVS----  172 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~~~e~~~~~p----  172 (303)
                      |+|+..... ......+.+++|+.++.+++++|.+.. ...+++++|+.. +|+...      ...+++|+++..+    
T Consensus        83 h~A~~~~~~-~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~riV~~SS~~~~~~~~~------~~~~~~E~~~~~~~~~~  154 (337)
T 2c29_D           83 HVATPMDFE-SKDPENEVIKPTIEGMLGIMKSCAAAK-TVRRLVFTSSAGTVNIQEH------QLPVYDESCWSDMEFCR  154 (337)
T ss_dssp             ECCCCCCSS-CSSHHHHTHHHHHHHHHHHHHHHHHHS-CCCEEEEECCGGGTSCSSS------CCSEECTTCCCCHHHHH
T ss_pred             EeccccCCC-CCChHHHHHHHHHHHHHHHHHHHHhCC-CccEEEEeeeHhhcccCCC------CCcccCcccCCchhhhc
Confidence            997643211 111112378999999999999998763 245666666654 333221      1223555542210    


Q ss_pred             --CCccchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          173 --KSNNFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       173 --~~~~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                        ..+.+.|+.+|.+.|.     .  .+ ++++++||++|||+.......  ..+........  +.+..+..      .
T Consensus       155 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-i~~~~lrp~~v~Gp~~~~~~~--~~~~~~~~~~~--g~~~~~~~------~  223 (337)
T 2c29_D          155 AKKMTAWMYFVSKTLAEQAAWKYAKENN-IDFITIIPTLVVGPFIMSSMP--PSLITALSPIT--GNEAHYSI------I  223 (337)
T ss_dssp             HHCCTTHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEECEEESCCSCSSCC--HHHHHHTHHHH--TCGGGHHH------H
T ss_pred             ccCCccchHHHHHHHHHHHHHHHHHHcC-CcEEEEeCCceECCCCCCCCC--chHHHHHHHHc--CCCccccc------c
Confidence              0123348888887762     2  24 999999999999975432211  11111000011  11111110      1


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      ....+++++|+|++++.++..+..    ++.|++++ ..+|+.|+++.+++.++
T Consensus       224 ~~~~~i~v~Dva~a~~~~~~~~~~----~~~~~~~~-~~~s~~e~~~~i~~~~~  272 (337)
T 2c29_D          224 RQGQFVHLDDLCNAHIYLFENPKA----EGRYICSS-HDCIILDLAKMLREKYP  272 (337)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHCTTC----CEEEEECC-EEEEHHHHHHHHHHHCT
T ss_pred             CCCCEEEHHHHHHHHHHHhcCccc----CceEEEeC-CCCCHHHHHHHHHHHCC
Confidence            123378999999999998876532    24686655 46899999999998874

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.93  E-value=1.3e-25  Score=196.76  Aligned_cols=225  Identities=12%  Similarity=0.046  Sum_probs=160.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh--ccCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT--LLED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~--~~~~   95 (303)
                      +++++||||||||+||++|++.|+ +.|++|++++|++....        ....+++++.+|+.|.+++.++++  ++|.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~   86 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASL-DAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDI   86 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHH-HTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHH-HCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCE
Confidence            334789999999999999999999 57899999999873211        123689999999999999999999  8888


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |||+++.               .|+.++.+++++|++.+ .+.+++. |   .|+           .+..|+.+..|..+
T Consensus        87 Vi~~a~~---------------~n~~~~~~l~~aa~~~g-~v~~~v~-S---~~g-----------~~~~e~~~~~p~~~  135 (346)
T 3i6i_A           87 VVSTVGG---------------ESILDQIALVKAMKAVG-TIKRFLP-S---EFG-----------HDVNRADPVEPGLN  135 (346)
T ss_dssp             EEECCCG---------------GGGGGHHHHHHHHHHHC-CCSEEEC-S---CCS-----------SCTTTCCCCTTHHH
T ss_pred             EEECCch---------------hhHHHHHHHHHHHHHcC-CceEEee-c---ccC-----------CCCCccCcCCCcch
Confidence            9999764               26777889999999864 2445543 2   232           22444444433344


Q ss_pred             cchHHHHHHHHHHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHH
Q 042242          176 NFYYVLEDLLKEKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSR  252 (303)
Q Consensus       176 ~~~y~~~k~~~e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  252 (303)
                         |..+|...+..   .+ ++++++||+.++|.......   ...     ........+.+.|.+    ....++++++
T Consensus       136 ---y~~sK~~~e~~l~~~g-~~~tivrpg~~~g~~~~~~~---~~~-----~~~~~~~~~~~~g~g----~~~~~~i~~~  199 (346)
T 3i6i_A          136 ---MYREKRRVRQLVEESG-IPFTYICCNSIASWPYYNNI---HPS-----EVLPPTDFFQIYGDG----NVKAYFVAGT  199 (346)
T ss_dssp             ---HHHHHHHHHHHHHHTT-CCBEEEECCEESSCCCSCC-------------CCCCSSCEEEETTS----CCCEEEECHH
T ss_pred             ---HHHHHHHHHHHHHHcC-CCEEEEEecccccccCcccc---ccc-----cccCCCceEEEccCC----CceEEecCHH
Confidence               78887777632   24 99999999999995322111   010     000012234444433    4556789999


Q ss_pred             HHHHHHHHHhcCcCCcCCCCceEEeec-CCCccHHhhHHHHHHHhcccCC
Q 042242          253 LVAEQHIWVATNDDISSTKGQAFNAIN-GPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       253 d~a~a~~~~~~~~~~~~~~g~~yni~~-~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      |+|+++++++..+...+   ++||+.+ ++.+|+.|+++.+++++|++.+
T Consensus       200 Dva~~~~~~l~~~~~~~---~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~  246 (346)
T 3i6i_A          200 DIGKFTMKTVDDVRTLN---KSVHFRPSCNCLNINELASVWEKKIGRTLP  246 (346)
T ss_dssp             HHHHHHHHHTTCGGGTT---EEEECCCGGGEECHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHhCccccC---eEEEEeCCCCCCCHHHHHHHHHHHHCCCCc
Confidence            99999999998876544   7899985 5799999999999999998865

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.93  E-value=1.7e-25  Score=205.84  Aligned_cols=234  Identities=15%  Similarity=0.046  Sum_probs=158.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc-
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS-  106 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~-  106 (303)
                      +|+|||||||||||++|++.|+ ..||+|++++|++.+.       ..+.+|+.+.  +.+.++++|.|+|+++..... 
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~-~~G~~V~~l~R~~~~~-------~~v~~d~~~~--~~~~l~~~D~Vih~A~~~~~~~  216 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQ-TGGHEVIQLVRKEPKP-------GKRFWDPLNP--ASDLLDGADVLVHLAGEPIFGR  216 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESSSCCT-------TCEECCTTSC--CTTTTTTCSEEEECCCC-----
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCCCc-------cceeecccch--hHHhcCCCCEEEECCCCccccc
Confidence            5799999999999999999999 6899999999987652       1356777653  456778888899998764322 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .......+.+++|+.++.++++++... ....+++++|+..+|+...      ...++.|+++. |.+.   |+..+...
T Consensus       217 ~~~~~~~~~~~~Nv~gt~~ll~a~a~~-~~~~r~V~~SS~~vyg~~~------~~~~~~E~~~~-~~~~---y~~~~~~~  285 (516)
T 3oh8_A          217 FNDSHKEAIRESRVLPTKFLAELVAES-TQCTTMISASAVGFYGHDR------GDEILTEESES-GDDF---LAEVCRDW  285 (516)
T ss_dssp             CCGGGHHHHHHHTHHHHHHHHHHHHHC-SSCCEEEEEEEGGGGCSEE------EEEEECTTSCC-CSSH---HHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhc-CCCCEEEEeCcceEecCCC------CCCccCCCCCC-CcCh---HHHHHHHH
Confidence            223334458899999999999984433 2455677777766775211      24567887765 3444   66655544


Q ss_pred             H-----H-hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          187 E-----K-LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       187 e-----~-~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      |     . ..+ ++++++||+.|||++.+    .   +..+....+ .+.... .+..    .+..++++++|+|++++.
T Consensus       286 E~~~~~~~~~g-i~~~ilRp~~v~Gp~~~----~---~~~~~~~~~-~g~~~~-~g~g----~~~~~~i~v~Dva~ai~~  351 (516)
T 3oh8_A          286 EHATAPASDAG-KRVAFIRTGVALSGRGG----M---LPLLKTLFS-TGLGGK-FGDG----TSWFSWIAIDDLTDIYYR  351 (516)
T ss_dssp             HHTTHHHHHTT-CEEEEEEECEEEBTTBS----H---HHHHHHTTC----CCC-CTTS----CCEECEEEHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-CCEEEEEeeEEECCCCC----h---HHHHHHHHH-hCCCcc-cCCC----CceEceEeHHHHHHHHHH
Confidence            4     1 224 99999999999996521    1   111111111 122222 2222    566788999999999999


Q ss_pred             HhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++.++...    ++||+++++.+|+.|+++.+++.+|++.
T Consensus       352 ~l~~~~~~----g~~ni~~~~~~s~~el~~~i~~~~g~~~  387 (516)
T 3oh8_A          352 AIVDAQIS----GPINAVAPNPVSNADMTKILATSMHRPA  387 (516)
T ss_dssp             HHHCTTCC----EEEEESCSCCEEHHHHHHHTTC------
T ss_pred             HHhCcccC----CcEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence            99876532    5899999999999999999999999865

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.93  E-value=1.4e-25  Score=185.90  Aligned_cols=218  Identities=12%  Similarity=0.132  Sum_probs=152.8

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCe-EEEEecCCCHHHHHHHHhccCceeEE
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSY-CFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~-~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ....+++|+|+||||||+||++++++|+ +.|++|++++|++.+.. ....++ +++.+|++  +.+.+.+.++|.|+|+
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~-~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~   91 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELK-NKGHEPVAMVRNEEQGPELRERGASDIVVANLE--EDFSHAFASIDAVVFA   91 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT--SCCGGGGTTCSEEEEC
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHH-hCCCeEEEEECChHHHHHHHhCCCceEEEcccH--HHHHHHHcCCCEEEEC
Confidence            3445568899999999999999999999 68999999999876643 223478 99999999  6778888999989999


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchH
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYY  179 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y  179 (303)
                      ++....  ..  ..+.+++|+.++.++++++++..  ..+++++|+   |+...           .+..+ .+..+   |
T Consensus        92 ag~~~~--~~--~~~~~~~n~~~~~~l~~a~~~~~--~~~iv~~SS---~~~~~-----------~~~~~-~~~~~---Y  147 (236)
T 3e8x_A           92 AGSGPH--TG--ADKTILIDLWGAIKTIQEAEKRG--IKRFIMVSS---VGTVD-----------PDQGP-MNMRH---Y  147 (236)
T ss_dssp             CCCCTT--SC--HHHHHHTTTHHHHHHHHHHHHHT--CCEEEEECC---TTCSC-----------GGGSC-GGGHH---H
T ss_pred             CCCCCC--CC--ccccchhhHHHHHHHHHHHHHcC--CCEEEEEec---CCCCC-----------CCCCh-hhhhh---H
Confidence            775322  22  23378999999999999998763  446666654   21110           11111 11233   8


Q ss_pred             HHHHHHHHH-hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHH
Q 042242          180 VLEDLLKEK-LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQ  257 (303)
Q Consensus       180 ~~~k~~~e~-~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a  257 (303)
                      +.+|...|. .+.. ++++++||+.++|+......                  .....+      .....+++++|+|++
T Consensus       148 ~~sK~~~e~~~~~~gi~~~~lrpg~v~~~~~~~~~------------------~~~~~~------~~~~~~i~~~Dva~~  203 (236)
T 3e8x_A          148 LVAKRLADDELKRSSLDYTIVRPGPLSNEESTGKV------------------TVSPHF------SEITRSITRHDVAKV  203 (236)
T ss_dssp             HHHHHHHHHHHHHSSSEEEEEEECSEECSCCCSEE------------------EEESSC------SCCCCCEEHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCcccCCCCCCeE------------------EeccCC------CcccCcEeHHHHHHH
Confidence            888887773 2222 99999999999996332110                  001111      234568899999999


Q ss_pred             HHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHH
Q 042242          258 HIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGK  294 (303)
Q Consensus       258 ~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~  294 (303)
                      ++.++..+...+   ++||++++ ..++.|+++.+++
T Consensus       204 ~~~~~~~~~~~g---~~~~v~~~-~~~~~e~~~~i~~  236 (236)
T 3e8x_A          204 IAELVDQQHTIG---KTFEVLNG-DTPIAKVVEQLGS  236 (236)
T ss_dssp             HHHHTTCGGGTT---EEEEEEEC-SEEHHHHHHTC--
T ss_pred             HHHHhcCccccC---CeEEEeCC-CcCHHHHHHHhcC
Confidence            999998876444   89999988 5899999987653

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.93  E-value=4.4e-25  Score=188.04  Aligned_cols=212  Identities=16%  Similarity=0.185  Sum_probs=150.2

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcC--CCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc
Q 042242           30 VAVIFGVTGLVGKELARRLISTA--NWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS  106 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~--g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~  106 (303)
                      +|||||||||||++++++|+ +.  |++|++++|++.+.. ....+++++.+|+.|.+++.++++++|.|+|+++..   
T Consensus         1 ~ilVtGatG~iG~~l~~~L~-~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~---   76 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLM-KTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSE---   76 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHT-TTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHH-hhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCC---
Confidence            58999999999999999999 56  899999999876532 223578899999999999999999999999997642   


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                               ...|+.++.+++++|++.+  ..+++++|+...|           .      .    ..+   |+.+|...
T Consensus        77 ---------~~~~~~~~~~l~~a~~~~~--~~~~v~~Ss~~~~-----------~------~----~~~---y~~sK~~~  121 (286)
T 2zcu_A           77 ---------VGQRAPQHRNVINAAKAAG--VKFIAYTSLLHAD-----------T------S----PLG---LADEHIET  121 (286)
T ss_dssp             --------------CHHHHHHHHHHHHT--CCEEEEEEETTTT-----------T------C----CST---THHHHHHH
T ss_pred             ---------chHHHHHHHHHHHHHHHcC--CCEEEEECCCCCC-----------C------C----cch---hHHHHHHH
Confidence                     1247889999999998763  3455555543232           0      0    123   77777666


Q ss_pred             HH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc
Q 042242          187 EK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT  263 (303)
Q Consensus       187 e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~  263 (303)
                      |.   ..+ ++++++||+.++++..    .++..     .+..  + ++..+. .    ....++++++|+|++++.++.
T Consensus       122 e~~~~~~~-~~~~ilrp~~~~~~~~----~~~~~-----~~~~--~-~~~~~~-~----~~~~~~i~~~Dva~~~~~~~~  183 (286)
T 2zcu_A          122 EKMLADSG-IVYTLLRNGWYSENYL----ASAPA-----ALEH--G-VFIGAA-G----DGKIASATRADYAAAAARVIS  183 (286)
T ss_dssp             HHHHHHHC-SEEEEEEECCBHHHHH----TTHHH-----HHHH--T-EEEESC-T----TCCBCCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHcC-CCeEEEeChHHhhhhH----HHhHH-----hhcC--C-ceeccC-C----CCccccccHHHHHHHHHHHhc
Confidence            63   234 9999999987665311    11111     1111  2 222332 1    455678999999999999988


Q ss_pred             CcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          264 NDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       264 ~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      .+...   +++||+++++.+|+.|+++.+++.+|++.+
T Consensus       184 ~~~~~---g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~  218 (286)
T 2zcu_A          184 EAGHE---GKVYELAGDSAWTLTQLAAELTKQSGKQVT  218 (286)
T ss_dssp             SSSCT---TCEEEECCSSCBCHHHHHHHHHHHHSSCCE
T ss_pred             CCCCC---CceEEEeCCCcCCHHHHHHHHHHHHCCCCc
Confidence            76543   489999999999999999999999998753

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.93  E-value=4e-25  Score=188.75  Aligned_cols=219  Identities=15%  Similarity=0.151  Sum_probs=152.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      ++||||||||+||++++++|++..|++|++++|++.+.. ....+++++.+|+.|++++.++++++|.|+|+++....  
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~--   78 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHP--   78 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCS--
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCcc--
Confidence            369999999999999999998434999999999887643 33468999999999999999999999999999764321  


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                              ...|+.++.+++++|++.+  +.+++++|+   |+..             +..+.. ..+...|. ++.+. 
T Consensus        79 --------~~~~~~~~~~l~~aa~~~g--v~~iv~~Ss---~~~~-------------~~~~~~-~~~~~~~~-e~~~~-  129 (289)
T 3e48_A           79 --------SFKRIPEVENLVYAAKQSG--VAHIIFIGY---YADQ-------------HNNPFH-MSPYFGYA-SRLLS-  129 (289)
T ss_dssp             --------HHHHHHHHHHHHHHHHHTT--CCEEEEEEE---SCCS-------------TTCCST-THHHHHHH-HHHHH-
T ss_pred             --------chhhHHHHHHHHHHHHHcC--CCEEEEEcc---cCCC-------------CCCCCc-cchhHHHH-HHHHH-
Confidence                    2347889999999999863  345555553   2111             111111 11111111 22222 


Q ss_pred             HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCC
Q 042242          188 KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       188 ~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                       ..+ ++++++||+.++|+    ...+      ...+... +.. ..+. .    ....++++++|+|++++.++..+..
T Consensus       130 -~~g-~~~~ilrp~~~~~~----~~~~------~~~~~~~-~~~-~~~~-g----~~~~~~i~~~Dva~~~~~~l~~~~~  190 (289)
T 3e48_A          130 -TSG-IDYTYVRMAMYMDP----LKPY------LPELMNM-HKL-IYPA-G----DGRINYITRNDIARGVIAIIKNPDT  190 (289)
T ss_dssp             -HHC-CEEEEEEECEESTT----HHHH------HHHHHHH-TEE-CCCC-T----TCEEEEECHHHHHHHHHHHHHCGGG
T ss_pred             -HcC-CCEEEEeccccccc----cHHH------HHHHHHC-CCE-ecCC-C----CceeeeEEHHHHHHHHHHHHcCCCc
Confidence             225 99999999999983    1111      1111111 211 2222 1    4556789999999999999988765


Q ss_pred             cCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          268 SSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       268 ~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      .+   ++||++ ++.+|+.|+++.+++++|++.+
T Consensus       191 ~g---~~~~~~-~~~~s~~e~~~~~~~~~g~~~~  220 (289)
T 3e48_A          191 WG---KRYLLS-GYSYDMKELAAILSEASGTEIK  220 (289)
T ss_dssp             TT---CEEEEC-CEEEEHHHHHHHHHHHHTSCCE
T ss_pred             CC---ceEEeC-CCcCCHHHHHHHHHHHHCCcee
Confidence            33   899999 9999999999999999998753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.93  E-value=3.4e-25  Score=181.60  Aligned_cols=214  Identities=10%  Similarity=0.045  Sum_probs=130.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQF  108 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~~  108 (303)
                      |+||||||||+||++++++|+ ..|++|++++|++.+.....++++++.+|+.|.++  +.+.++|.|+|+++....   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~---   74 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAK-NRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL--SDLSDQNVVVDAYGISPD---   74 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH--HHHTTCSEEEECCCSSTT---
T ss_pred             CeEEEEcCCchhHHHHHHHHH-hCCCEEEEEEcCchhhhhccCCCeEEeccccChhh--hhhcCCCEEEECCcCCcc---
Confidence            479999999999999999999 67999999999987644223789999999999887  788999999999776321   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH-
Q 042242          109 ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-  187 (303)
Q Consensus       109 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-  187 (303)
                            ..+.|+.++.++++++++.+  ..+++++|+...|.+..      ...+..|+.+..|...   |+..|...+ 
T Consensus        75 ------~~~~~~~~~~~l~~a~~~~~--~~~~v~~SS~~~~~~~~------~~~~~~~~~~~~~~~~---y~~~k~~~e~  137 (221)
T 3ew7_A           75 ------EAEKHVTSLDHLISVLNGTV--SPRLLVVGGAASLQIDE------DGNTLLESKGLREAPY---YPTARAQAKQ  137 (221)
T ss_dssp             ------TTTSHHHHHHHHHHHHCSCC--SSEEEEECCCC-------------------------CCC---SCCHHHHHHH
T ss_pred             ------ccchHHHHHHHHHHHHHhcC--CceEEEEecceEEEcCC------CCccccccCCCCCHHH---HHHHHHHHHH
Confidence                  24668999999999999762  34455555433332211      1223455555444444   555444443 


Q ss_pred             ---Hhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHh
Q 042242          188 ---KLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVA  262 (303)
Q Consensus       188 ---~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~  262 (303)
                         ... .. ++++++||+.+||+++...     .+   . .   ...++...+..       ..+++++|+|++++.++
T Consensus       138 ~~~~~~~~~gi~~~ivrp~~v~g~~~~~~-----~~---~-~---~~~~~~~~~~~-------~~~i~~~Dva~~~~~~l  198 (221)
T 3ew7_A          138 LEHLKSHQAEFSWTYISPSAMFEPGERTG-----DY---Q-I---GKDHLLFGSDG-------NSFISMEDYAIAVLDEI  198 (221)
T ss_dssp             HHHHHTTTTTSCEEEEECSSCCCCC----------------------------------------CCCHHHHHHHHHHHH
T ss_pred             HHHHHhhccCccEEEEeCcceecCCCccC-----ce---E-e---ccccceecCCC-------CceEeHHHHHHHHHHHH
Confidence               221 23 9999999999999633211     10   0 0   01122222221       13778899999999999


Q ss_pred             cCcCCcCCCCceEEeecCCCccHHh
Q 042242          263 TNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       263 ~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                      .++...+   ++||++++...+..|
T Consensus       199 ~~~~~~g---~~~~~~~~~~~~~~~  220 (221)
T 3ew7_A          199 ERPNHLN---EHFTVAGKLEHHHHH  220 (221)
T ss_dssp             HSCSCTT---SEEECCC--------
T ss_pred             hCccccC---CEEEECCCCcccccc
Confidence            9987655   999999998877665

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.93  E-value=1.1e-24  Score=178.89  Aligned_cols=215  Identities=12%  Similarity=0.070  Sum_probs=146.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      |+||||||||+||++|+++|+ +.|++|++++|++.+.. ....+++++.+|+.|.++  +.+.++|.|+|+++..+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~   77 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEAR-RRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWGSG   77 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTTSS
T ss_pred             CEEEEEcCCCHHHHHHHHHHH-HCCCEEEEEEecccccccccCCCceEEecccccccH--hhcccCCEEEECCccCCCcc
Confidence            479999999999999999999 67999999999876543 234689999999999887  78899999999987653221


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccc-cccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKH-YVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~-y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                             ..+.|+.++.++++++++.+   .+++++|+... |.....     ...+..+.....|..+   |+.+|...
T Consensus        78 -------~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~~~~~~~~~-----~~~~~~~~~~~~~~~~---y~~sK~~~  139 (224)
T 3h2s_A           78 -------RGYLHLDFATHLVSLLRNSD---TLAVFILGSASLAMPGAD-----HPMILDFPESAASQPW---YDGALYQY  139 (224)
T ss_dssp             -------CTHHHHHHHHHHHHTCTTCC---CEEEEECCGGGSBCTTCS-----SCGGGGCCGGGGGSTT---HHHHHHHH
T ss_pred             -------hhhHHHHHHHHHHHHHHHcC---CcEEEEecceeeccCCCC-----ccccccCCCCCccchh---hHHHHHHH
Confidence                   24679999999999999875   45555554323 322211     0112333322222334   88888777


Q ss_pred             HHh----cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          187 EKL----AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       187 e~~----~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      |..    ... ++++++||+.+||++....  +...           ...+..+       .....+++++|+|++++.+
T Consensus       140 e~~~~~~~~~~i~~~ivrp~~v~g~~~~~~--~~~~-----------~~~~~~~-------~~~~~~i~~~DvA~~~~~~  199 (224)
T 3h2s_A          140 YEYQFLQMNANVNWIGISPSEAFPSGPATS--YVAG-----------KDTLLVG-------EDGQSHITTGNMALAILDQ  199 (224)
T ss_dssp             HHHHHHTTCTTSCEEEEEECSBCCCCCCCC--EEEE-----------SSBCCCC-------TTSCCBCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcEEEEcCccccCCCcccC--ceec-----------ccccccC-------CCCCceEeHHHHHHHHHHH
Confidence            632    233 9999999999999743322  1000           1111221       2334688999999999999


Q ss_pred             hcCcCCcCCCCceEEeecCCCccHHh
Q 042242          262 ATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                      +.++...+   ++|++++.+..++.+
T Consensus       200 l~~~~~~g---~~~~~~~~~~~~~~~  222 (224)
T 3h2s_A          200 LEHPTAIR---DRIVVRDADLEHHHH  222 (224)
T ss_dssp             HHSCCCTT---SEEEEEECC------
T ss_pred             hcCccccC---CEEEEecCcchhccc
Confidence            99987655   899999988766544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.91  E-value=4.7e-24  Score=183.00  Aligned_cols=225  Identities=16%  Similarity=0.033  Sum_probs=155.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~  103 (303)
                      +|+|+||||||+||++++++|+ +.| ++|++++|++.+..   ....+++++.+|+.|.+++.++++++|.|+|+++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   83 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLL-EDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYW   83 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCHH
T ss_pred             CCEEEEECCCchHHHHHHHHHH-hcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCCC
Confidence            4799999999999999999999 456 99999999876531   223578999999999999999999999899986531


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHH
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLED  183 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k  183 (303)
                      ..    .    ..+.|+.++.++++++++.+  ..++++.|+...|...             +..   +..+   |..+|
T Consensus        84 ~~----~----~~~~~~~~~~~~~~aa~~~g--v~~iv~~S~~~~~~~~-------------~~~---~~~~---y~~sK  134 (299)
T 2wm3_A           84 ES----C----SQEQEVKQGKLLADLARRLG--LHYVVYSGLENIKKLT-------------AGR---LAAA---HFDGK  134 (299)
T ss_dssp             HH----T----CHHHHHHHHHHHHHHHHHHT--CSEEEECCCCCHHHHT-------------TTS---CCCH---HHHHH
T ss_pred             cc----c----cchHHHHHHHHHHHHHHHcC--CCEEEEEcCccccccC-------------CCc---ccCc---hhhHH
Confidence            10    0    13567889999999998763  4466665443333211             111   1233   66666


Q ss_pred             HHHHHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc--eeeCCchhhhhhhcccCccHHHHHHHH
Q 042242          184 LLKEKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP--FVFGGTREIWEEYCLDGSDSRLVAEQH  258 (303)
Q Consensus       184 ~~~e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~a~a~  258 (303)
                      ...|..   .+ ++++++||+.+||+....   +...       ....+..  +..+. .    ....++++++|+|+++
T Consensus       135 ~~~e~~~~~~g-i~~~ilrp~~~~~~~~~~---~~~~-------~~~~g~~~~~~~~~-~----~~~~~~i~~~Dva~~~  198 (299)
T 2wm3_A          135 GEVEEYFRDIG-VPMTSVRLPCYFENLLSH---FLPQ-------KAPDGKSYLLSLPT-G----DVPMDGMSVSDLGPVV  198 (299)
T ss_dssp             HHHHHHHHHHT-CCEEEEECCEEGGGGGTT---TCCE-------ECTTSSSEEECCCC-T----TSCEEEECGGGHHHHH
T ss_pred             HHHHHHHHHCC-CCEEEEeecHHhhhchhh---cCCc-------ccCCCCEEEEEecC-C----CCccceecHHHHHHHH
Confidence            665522   25 999999999999942211   0000       0001221  12221 1    4455678889999999


Q ss_pred             HHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          259 IWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       259 ~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +.++..+..  ..|++||+++ +.+|+.|+++.+++++|++.+
T Consensus       199 ~~~l~~~~~--~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~  238 (299)
T 2wm3_A          199 LSLLKMPEK--YVGQNIGLST-CRHTAEEYAALLTKHTRKVVH  238 (299)
T ss_dssp             HHHHHSHHH--HTTCEEECCS-EEECHHHHHHHHHHHHSSCEE
T ss_pred             HHHHcChhh--hCCeEEEeee-ccCCHHHHHHHHHHHHCCCce
Confidence            998876532  1247999987 579999999999999998753

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.90  E-value=3.3e-24  Score=189.32  Aligned_cols=210  Identities=16%  Similarity=0.131  Sum_probs=150.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQ  107 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~~  107 (303)
                      |+|||||||||||++|+++|+ +.|+ +|++++|+                  .|.+++.++++++|.|+|+++..... 
T Consensus         1 M~VlVtGatG~iG~~l~~~L~-~~g~~~v~~~d~~------------------~d~~~l~~~~~~~d~Vih~a~~~~~~-   60 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLT-STTDHHIFEVHRQ------------------TKEEELESALLKADFIVHLAGVNRPE-   60 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HHCCCEEEECCTT------------------CCHHHHHHHHHHCSEEEECCCSBCTT-
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCCEEEEECCC------------------CCHHHHHHHhccCCEEEECCcCCCCC-
Confidence            489999999999999999999 5677 66665553                  77889999999999999998754322 


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH
Q 042242          108 FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE  187 (303)
Q Consensus       108 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e  187 (303)
                         ++.+.++.|+.++.+++++|++.+.+ .+++++|+..+|+                      .++   |+.+|...|
T Consensus        61 ---~~~~~~~~n~~~~~~l~~a~~~~~~~-~~~v~~Ss~~~~~----------------------~~~---Y~~sK~~~E  111 (369)
T 3st7_A           61 ---HDKEFSLGNVSYLDHVLDILTRNTKK-PAILLSSSIQATQ----------------------DNP---YGESKLQGE  111 (369)
T ss_dssp             ---CSTTCSSSCCBHHHHHHHHHTTCSSC-CEEEEEEEGGGGS----------------------CSH---HHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeCchhhcC----------------------CCC---chHHHHHHH
Confidence               12226788999999999999987422 1555555544441                      223   777776665


Q ss_pred             -----Hh--cCCcceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHH
Q 042242          188 -----KL--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHI  259 (303)
Q Consensus       188 -----~~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~  259 (303)
                           +.  .+ ++++++||+++||++.....+.  .+..+.. +..  +.++.+.+ .    ....++++++|+|++++
T Consensus       112 ~~~~~~~~~~g-~~~~i~R~~~v~G~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~-~----~~~~~~i~v~Dva~~~~  181 (369)
T 3st7_A          112 QLLREYAEEYG-NTVYIYRWPNLFGKWCKPNYNS--VIATFCYKIAR--NEEIQVND-R----NVELTLNYVDDIVAEIK  181 (369)
T ss_dssp             HHHHHHHHHHC-CCEEEEEECEEECTTCCTTSSC--HHHHHHHHHHT--TCCCCCSC-T----TCEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCEEEEECCceeCCCCCCCcch--HHHHHHHHHHc--CCCeEecC-C----CeEEEEEEHHHHHHHHH
Confidence                 22  24 9999999999999754322211  1222222 222  33433331 1    55678999999999999


Q ss_pred             HHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          260 WVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       260 ~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      .++..+...  .+++||+++++.+|+.|+++.+++.+|.+
T Consensus       182 ~~l~~~~~~--~~~~~~i~~~~~~s~~e~~~~~~~~~g~~  219 (369)
T 3st7_A          182 RAIEGTPTI--ENGVPTVPNVFKVTLGEIVDLLYKFKQSR  219 (369)
T ss_dssp             HHHHTCCCE--ETTEECCSCCEEEEHHHHHHHHHHHHHHH
T ss_pred             HHHhCCccc--CCceEEeCCCCceeHHHHHHHHHHHhCCC
Confidence            999887653  13899999999999999999999999876

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.90  E-value=7.2e-24  Score=172.96  Aligned_cols=205  Identities=15%  Similarity=0.099  Sum_probs=145.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~  104 (303)
                      |+++|+||||||+||++++++|+ +.|+  +|++++|++.+   ..++++++.+|+.|.+++.+++  +|.|+|+++...
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~-~~g~~~~V~~~~r~~~~---~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~~   77 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRIL-SEPTLAKVIAPARKALA---EHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTTI   77 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHH-HCTTCCEEECCBSSCCC---CCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCCH
T ss_pred             CCceEEEECCCcHHHHHHHHHHH-hCCCCCeEEEEeCCCcc---cCCCceEEeccccCHHHHHHhh--hcEEEECeeecc
Confidence            56899999999999999999999 5777  99999998765   3467888899999988887777  788999976543


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ..  ..+..+.+++|+.++.++++++++..  ..+++++|+...|..                    |..+   |+.+|.
T Consensus        78 ~~--~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~Ss~~~~~~--------------------~~~~---y~~sK~  130 (215)
T 2a35_A           78 KE--AGSEEAFRAVDFDLPLAVGKRALEMG--ARHYLVVSALGADAK--------------------SSIF---YNRVKG  130 (215)
T ss_dssp             HH--HSSHHHHHHHHTHHHHHHHHHHHHTT--CCEEEEECCTTCCTT--------------------CSSH---HHHHHH
T ss_pred             cc--CCCHHHHHHhhHHHHHHHHHHHHHcC--CCEEEEECCcccCCC--------------------CccH---HHHHHH
Confidence            22  12233478999999999999998763  446666665434311                    1334   899988


Q ss_pred             HHHHh-cCC-cc-eEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          185 LKEKL-AGK-VA-WSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       185 ~~e~~-~~~-~~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      ..|.. ... ++ ++++||+.+||+...  ..+...+      .. ...+ ..++        ..++++++|+|++++.+
T Consensus       131 ~~e~~~~~~~~~~~~~vrp~~v~g~~~~--~~~~~~~------~~-~~~~-~~~~--------~~~~i~~~Dva~~~~~~  192 (215)
T 2a35_A          131 ELEQALQEQGWPQLTIARPSLLFGPREE--FRLAEIL------AA-PIAR-ILPG--------KYHGIEACDLARALWRL  192 (215)
T ss_dssp             HHHHHHTTSCCSEEEEEECCSEESTTSC--EEGGGGT------TC-CCC-----C--------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEeCceeeCCCCc--chHHHHH------HH-hhhh-ccCC--------CcCcEeHHHHHHHHHHH
Confidence            88843 222 88 999999999996433  1111111      00 0112 1122        22478899999999999


Q ss_pred             hcCcCCcCCCCceEEeecCCCccHHh
Q 042242          262 ATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                      +..+.  +   ++||+++++.+++.+
T Consensus       193 ~~~~~--~---~~~~i~~~~~~~~~~  213 (215)
T 2a35_A          193 ALEEG--K---GVRFVESDELRKLGK  213 (215)
T ss_dssp             HTCCC--S---EEEEEEHHHHHHHHH
T ss_pred             HhcCC--C---CceEEcHHHHHHhhc
Confidence            98764  3   799999987766543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.89  E-value=4e-22  Score=161.39  Aligned_cols=199  Identities=13%  Similarity=0.108  Sum_probs=140.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccccc-CCCeEEEEecCCCHHHHHHHHhccCceeEEeeccccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQ-SSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWAS  106 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~~  106 (303)
                      +|+|+||||||+||++++++|+ +.|++|++++|++.+.... ..+++++.+|+.|.+++.++++++|.|+|+++.... 
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~-   80 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRND-   80 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTC-
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-HCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCC-
Confidence            3799999999999999999999 5789999999987654322 467899999999999999999999989999765332 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .   +   ..+.|+.++.++++++++..  ..+++++|+...|+...       ..      +. +..+   |..+|...
T Consensus        81 ~---~---~~~~n~~~~~~~~~~~~~~~--~~~~v~~Ss~~~~~~~~-------~~------~~-~~~~---y~~~K~~~  135 (206)
T 1hdo_A           81 L---S---PTTVMSEGARNIVAAMKAHG--VDKVVACTSAFLLWDPT-------KV------PP-RLQA---VTDDHIRM  135 (206)
T ss_dssp             C---S---CCCHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSCTT-------CS------CG-GGHH---HHHHHHHH
T ss_pred             C---C---ccchHHHHHHHHHHHHHHhC--CCeEEEEeeeeeccCcc-------cc------cc-cchh---HHHHHHHH
Confidence            1   1   13578999999999998763  45666666655553221       00      00 1233   88888776


Q ss_pred             HH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc
Q 042242          187 EK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT  263 (303)
Q Consensus       187 e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~  263 (303)
                      |.   ..+ ++++++||+.+ ++++... .+..                ...+..    .  ..+++++|+|++++.++.
T Consensus       136 e~~~~~~~-i~~~~lrp~~~-~~~~~~~-~~~~----------------~~~~~~----~--~~~i~~~Dva~~~~~~~~  190 (206)
T 1hdo_A          136 HKVLRESG-LKYVAVMPPHI-GDQPLTG-AYTV----------------TLDGRG----P--SRVISKHDLGHFMLRCLT  190 (206)
T ss_dssp             HHHHHHTC-SEEEEECCSEE-ECCCCCS-CCEE----------------ESSSCS----S--CSEEEHHHHHHHHHHTTS
T ss_pred             HHHHHhCC-CCEEEEeCCcc-cCCCCCc-ceEe----------------cccCCC----C--CCccCHHHHHHHHHHHhc
Confidence            63   234 99999999997 4322211 0000                001100    0  247899999999999998


Q ss_pred             CcCCcCCCCceEEeecCC
Q 042242          264 NDDISSTKGQAFNAINGP  281 (303)
Q Consensus       264 ~~~~~~~~g~~yni~~~~  281 (303)
                      ++...   |++||+++++
T Consensus       191 ~~~~~---g~~~~i~~g~  205 (206)
T 1hdo_A          191 TDEYD---GHSTYPSHQY  205 (206)
T ss_dssp             CSTTT---TCEEEEECCC
T ss_pred             Ccccc---ccceeeeccc
Confidence            87544   4899999875

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.89  E-value=1e-22  Score=175.64  Aligned_cols=229  Identities=13%  Similarity=0.070  Sum_probs=153.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-----c----ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-----A----IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-----~----~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +++|+||||||+||++++++|+ +.|++|++++|++...     .    ....+++++.+|+.|.+++.++++++|.|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASI-SLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-hCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence            3689999999999999999999 5789999999986421     0    1246899999999999999999999999999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      +++.....           .|+.++.+++++|++.+ ++.++++ |   .|+...       .. .  +.+..|.  ...
T Consensus        83 ~a~~~~~~-----------~~~~~~~~l~~aa~~~g-~v~~~v~-S---~~g~~~-------~~-~--~~~~~p~--~~~  134 (313)
T 1qyd_A           83 ALAGGVLS-----------HHILEQLKLVEAIKEAG-NIKRFLP-S---EFGMDP-------DI-M--EHALQPG--SIT  134 (313)
T ss_dssp             CCCCSSSS-----------TTTTTHHHHHHHHHHSC-CCSEEEC-S---CCSSCT-------TS-C--CCCCSST--THH
T ss_pred             CCccccch-----------hhHHHHHHHHHHHHhcC-CCceEEe-c---CCcCCc-------cc-c--ccCCCCC--cch
Confidence            97643221           25667788999998763 2445553 2   332211       10 0  1121211  223


Q ss_pred             HHHHHHHHHH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHH
Q 042242          179 YVLEDLLKEK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVA  255 (303)
Q Consensus       179 y~~~k~~~e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a  255 (303)
                      | .+|...|.   ..+ ++++++||+.++|............       ....+..+...+..    ....++++++|+|
T Consensus       135 y-~sK~~~e~~~~~~g-~~~~ilrp~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g----~~~~~~i~~~Dva  201 (313)
T 1qyd_A          135 F-IDKRKVRRAIEAAS-IPYTYVSSNMFAGYFAGSLAQLDGH-------MMPPRDKVLIYGDG----NVKGIWVDEDDVG  201 (313)
T ss_dssp             H-HHHHHHHHHHHHTT-CCBCEEECCEEHHHHTTTSSCTTCC-------SSCCSSEECCBTTS----CSEEEEECHHHHH
T ss_pred             H-HHHHHHHHHHHhcC-CCeEEEEeceecccccccccccccc-------ccCCCCeEEEeCCC----CceEEEEEHHHHH
Confidence            6 66666552   224 9999999999988422111000000       00011222233322    4556788999999


Q ss_pred             HHHHHHhcCcCCcCCCCceEEeecC-CCccHHhhHHHHHHHhcccCC
Q 042242          256 EQHIWVATNDDISSTKGQAFNAING-PRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       256 ~a~~~~~~~~~~~~~~g~~yni~~~-~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++++.++..+...+   +.|++.++ +.+|+.|+++.+++++|++.+
T Consensus       202 ~~~~~~l~~~~~~~---~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~  245 (313)
T 1qyd_A          202 TYTIKSIDDPQTLN---KTMYIRPPMNILSQKEVIQIWERLSEQNLD  245 (313)
T ss_dssp             HHHHHHTTCGGGSS---SEEECCCGGGEEEHHHHHHHHHHHHTCCCE
T ss_pred             HHHHHHHhCcccCC---ceEEEeCCCCccCHHHHHHHHHHhcCCCCc
Confidence            99999988775433   77888764 789999999999999998754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.89  E-value=1.2e-22  Score=174.84  Aligned_cols=223  Identities=11%  Similarity=0.073  Sum_probs=150.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc----------cccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT----------AIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~----------~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      +++|+||||||+||++++++|+ +.|++|++++|++...          .+...+++++.+|+.|.+++.++++++|.||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASL-DLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-hCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence            4689999999999999999999 5789999999986432          0124689999999999999999999999999


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccc
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNF  177 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~  177 (303)
                      |+++...               +.++.+++++|++.+ ++.++++ |   .|+..           ..+..+..|.  ..
T Consensus        83 ~~a~~~~---------------~~~~~~l~~aa~~~g-~v~~~v~-S---~~g~~-----------~~~~~~~~p~--~~  129 (308)
T 1qyc_A           83 STVGSLQ---------------IESQVNIIKAIKEVG-TVKRFFP-S---EFGND-----------VDNVHAVEPA--KS  129 (308)
T ss_dssp             ECCCGGG---------------SGGGHHHHHHHHHHC-CCSEEEC-S---CCSSC-----------TTSCCCCTTH--HH
T ss_pred             ECCcchh---------------hhhHHHHHHHHHhcC-CCceEee-c---ccccC-----------ccccccCCcc--hh
Confidence            9976421               234567899988763 2445542 2   23211           1222222211  22


Q ss_pred             hHHHHHHHHHH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHH
Q 042242          178 YYVLEDLLKEK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLV  254 (303)
Q Consensus       178 ~y~~~k~~~e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  254 (303)
                      .| .+|...+.   ..+ ++++++||+.++|............      .  .....+...+..    ....++++++|+
T Consensus       130 ~y-~sK~~~e~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~----~~~~~~i~~~Dv  195 (308)
T 1qyc_A          130 VF-EVKAKVRRAIEAEG-IPYTYVSSNCFAGYFLRSLAQAGLT------A--PPRDKVVILGDG----NARVVFVKEEDI  195 (308)
T ss_dssp             HH-HHHHHHHHHHHHHT-CCBEEEECCEEHHHHTTTTTCTTCS------S--CCSSEEEEETTS----CCEEEEECHHHH
T ss_pred             HH-HHHHHHHHHHHhcC-CCeEEEEeceecccccccccccccc------C--CCCCceEEecCC----CceEEEecHHHH
Confidence            36 66665552   124 9999999999998422111110000      0  012233333332    445678899999


Q ss_pred             HHHHHHHhcCcCCcCCCCceEEeecC-CCccHHhhHHHHHHHhcccCC
Q 042242          255 AEQHIWVATNDDISSTKGQAFNAING-PRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       255 a~a~~~~~~~~~~~~~~g~~yni~~~-~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      |++++.++.++...+   +.|++.++ +.+|+.|+++.+++++|++.+
T Consensus       196 a~~~~~~l~~~~~~~---~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~  240 (308)
T 1qyc_A          196 GTFTIKAVDDPRTLN---KTLYLRLPANTLSLNELVALWEKKIDKTLE  240 (308)
T ss_dssp             HHHHHTTSSCGGGTT---EEEECCCGGGEEEHHHHHHHHHHHTTSCCE
T ss_pred             HHHHHHHHhCccccC---eEEEEeCCCCccCHHHHHHHHHHHhCCCCc
Confidence            999999887765433   78888764 689999999999999998764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.88  E-value=5.6e-23  Score=177.82  Aligned_cols=220  Identities=15%  Similarity=0.086  Sum_probs=149.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      |+++|+||||||+||++++++|+ +.|++|++++|++....     ....+++++.+|+.|.+++.++++++|.|+|+++
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSL-KLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHH-HTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCeEEEECCCchHHHHHHHHHH-HCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            45689999999999999999999 57899999999875211     1235799999999999999999999999999976


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc-cchHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN-NFYYV  180 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~-~~~y~  180 (303)
                      ...               +.++.++++++++.+ .+.++++ |   .|+..           ..+..+   ..| ...| 
T Consensus        89 ~~~---------------~~~~~~l~~aa~~~g-~v~~~v~-S---~~g~~-----------~~~~~~---~~p~~~~y-  133 (318)
T 2r6j_A           89 FPQ---------------ILDQFKILEAIKVAG-NIKRFLP-S---DFGVE-----------EDRINA---LPPFEALI-  133 (318)
T ss_dssp             GGG---------------STTHHHHHHHHHHHC-CCCEEEC-S---CCSSC-----------TTTCCC---CHHHHHHH-
T ss_pred             hhh---------------hHHHHHHHHHHHhcC-CCCEEEe-e---ccccC-----------cccccC---CCCcchhH-
Confidence            421               334577899988763 1345543 2   23211           122222   122 2236 


Q ss_pred             HHHHHHHH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHH
Q 042242          181 LEDLLKEK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQ  257 (303)
Q Consensus       181 ~~k~~~e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a  257 (303)
                      .+|...+.   ..+ ++++++||+.+++.    .   ...+   .... ....++...+..    ....++++++|+|++
T Consensus       134 ~sK~~~e~~~~~~~-~~~~~lr~~~~~~~----~---~~~~---~~~~-~~~~~~~~~~~~----~~~~~~i~~~Dva~~  197 (318)
T 2r6j_A          134 ERKRMIRRAIEEAN-IPYTYVSANCFASY----F---INYL---LRPY-DPKDEITVYGTG----EAKFAMNYEQDIGLY  197 (318)
T ss_dssp             HHHHHHHHHHHHTT-CCBEEEECCEEHHH----H---HHHH---HCTT-CCCSEEEEETTS----CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CCeEEEEcceehhh----h---hhhh---cccc-CCCCceEEecCC----CceeeEeeHHHHHHH
Confidence            56655552   224 99999999888762    1   0110   0000 012233333332    445678899999999


Q ss_pred             HHHHhcCcCCcCCCCceEEeec-CCCccHHhhHHHHHHHhcccCC
Q 042242          258 HIWVATNDDISSTKGQAFNAIN-GPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       258 ~~~~~~~~~~~~~~g~~yni~~-~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++.++..+...+   +.|++.+ ++.+|+.|+++.+++++|++.+
T Consensus       198 ~~~~l~~~~~~~---~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~  239 (318)
T 2r6j_A          198 TIKVATDPRALN---RVVIYRPSTNIITQLELISRWEKKIGKKFK  239 (318)
T ss_dssp             HHHHTTCGGGTT---EEEECCCGGGEEEHHHHHHHHHHHHTCCCE
T ss_pred             HHHHhcCccccC---eEEEecCCCCccCHHHHHHHHHHHhCCCCc
Confidence            999988765433   7788875 4789999999999999998764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.88  E-value=3.3e-22  Score=171.98  Aligned_cols=223  Identities=16%  Similarity=0.097  Sum_probs=148.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC-------cccc----ccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP-------EITA----IQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-------~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +++|+||||||+||++|+++|+ +.|++|++++|++       .+..    ....+++++.+|+.|.+++.++++++|.|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASI-KAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHH-hCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence            4689999999999999999999 5789999999986       1111    12357899999999999999999999999


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      +|+++...               +.++.++++++++.+ .+.++++ |   .|+..           ..+..+..|.  .
T Consensus        81 i~~a~~~~---------------~~~~~~l~~aa~~~g-~v~~~v~-S---~~g~~-----------~~~~~~~~p~--~  127 (307)
T 2gas_A           81 ICAAGRLL---------------IEDQVKIIKAIKEAG-NVKKFFP-S---EFGLD-----------VDRHDAVEPV--R  127 (307)
T ss_dssp             EECSSSSC---------------GGGHHHHHHHHHHHC-CCSEEEC-S---CCSSC-----------TTSCCCCTTH--H
T ss_pred             EECCcccc---------------cccHHHHHHHHHhcC-CceEEee-c---ccccC-----------cccccCCCcc--h
Confidence            99976421               234567888888753 1445542 2   33211           1222222211  2


Q ss_pred             chHHHHHHHHHH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          177 FYYVLEDLLKEK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       177 ~~y~~~k~~~e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      ..| .+|...+.   ..+ ++++++||+.+++..........        ........+...+..    ....++++++|
T Consensus       128 ~~y-~sK~~~e~~~~~~~-i~~~~lrp~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~----~~~~~~i~~~D  193 (307)
T 2gas_A          128 QVF-EEKASIRRVIEAEG-VPYTYLCCHAFTGYFLRNLAQLD--------ATDPPRDKVVILGDG----NVKGAYVTEAD  193 (307)
T ss_dssp             HHH-HHHHHHHHHHHHHT-CCBEEEECCEETTTTGGGTTCTT--------CSSCCSSEEEEETTS----CSEEEEECHHH
T ss_pred             hHH-HHHHHHHHHHHHcC-CCeEEEEcceeeccccccccccc--------cccCCCCeEEEecCC----CcceEEeeHHH
Confidence            236 66665552   224 99999999998873211100000        000011223333322    34567889999


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecC-CCccHHhhHHHHHHHhcccCC
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAING-PRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~-~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +|++++.++..+...+   +.|++.++ +.+|+.|+++.+++.+|++.+
T Consensus       194 va~~~~~~l~~~~~~~---~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~  239 (307)
T 2gas_A          194 VGTFTIRAANDPNTLN---KAVHIRLPKNYLTQNEVIALWEKKIGKTLE  239 (307)
T ss_dssp             HHHHHHHHHTCGGGTT---EEEECCCGGGEEEHHHHHHHHHHHHTSCCE
T ss_pred             HHHHHHHHHcCccccC---ceEEEeCCCCcCCHHHHHHHHHHHhCCCCc
Confidence            9999999988765433   77888764 689999999999999998754

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.88  E-value=1.3e-22  Score=175.76  Aligned_cols=221  Identities=14%  Similarity=0.067  Sum_probs=149.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC-cc-----cc----ccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP-EI-----TA----IQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-~~-----~~----~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ++++|+||||||+||++++++|+ +.|++|++++|++ ..     ..    ....+++++.+|+.|.+++.++++++|.|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~v   81 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASL-SFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIV   81 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHH-HTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHH-hCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence            34689999999999999999999 5789999999986 21     10    12357999999999999999999999999


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc-
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN-  175 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~-  175 (303)
                      +|+++...               +.++.+++++|++.+ .+.++++ |   .|+..           ..|..+.   .| 
T Consensus        82 i~~a~~~~---------------~~~~~~l~~aa~~~g-~v~~~v~-S---~~g~~-----------~~~~~~~---~p~  127 (321)
T 3c1o_A           82 ISALPFPM---------------ISSQIHIINAIKAAG-NIKRFLP-S---DFGCE-----------EDRIKPL---PPF  127 (321)
T ss_dssp             EECCCGGG---------------SGGGHHHHHHHHHHC-CCCEEEC-S---CCSSC-----------GGGCCCC---HHH
T ss_pred             EECCCccc---------------hhhHHHHHHHHHHhC-CccEEec-c---ccccC-----------ccccccC---CCc
Confidence            99976421               344567899988763 1345442 2   33211           1222221   12 


Q ss_pred             cchHHHHHHHHHH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHH--hhhCCCceeeCCchhhhhhhcccCcc
Q 042242          176 NFYYVLEDLLKEK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAV--CKHLNLPFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       176 ~~~y~~~k~~~e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (303)
                      ...| .+|...|.   ..+ ++++++||+.+++...       ..   +...  ....+..+...+..    ....++++
T Consensus       128 ~~~y-~sK~~~e~~~~~~~-~~~~~lrp~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~i~  191 (321)
T 3c1o_A          128 ESVL-EKKRIIRRAIEAAA-LPYTYVSANCFGAYFV-------NY---LLHPSPHPNRNDDIVIYGTG----ETKFVLNY  191 (321)
T ss_dssp             HHHH-HHHHHHHHHHHHHT-CCBEEEECCEEHHHHH-------HH---HHCCCSSCCTTSCEEEETTS----CCEEEEEC
T ss_pred             chHH-HHHHHHHHHHHHcC-CCeEEEEeceeccccc-------cc---cccccccccccCceEEecCC----CcceeEee
Confidence            2236 66665552   224 9999999999887310       01   0000  00012223333322    44567889


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeec-CCCccHHhhHHHHHHHhcccCC
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAIN-GPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~-~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++|+|++++.++..+...+   +.|++.+ ++.+|+.|+++.+++.+|++.+
T Consensus       192 ~~Dva~~~~~~l~~~~~~g---~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~  240 (321)
T 3c1o_A          192 EEDIAKYTIKVACDPRCCN---RIVIYRPPKNIISQNELISLWEAKSGLSFK  240 (321)
T ss_dssp             HHHHHHHHHHHHHCGGGTT---EEEECCCGGGEEEHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHhCccccC---eEEEEeCCCCcccHHHHHHHHHHHcCCcce
Confidence            9999999999988765433   7888876 4789999999999999998864

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.88  E-value=6.2e-22  Score=173.49  Aligned_cols=227  Identities=11%  Similarity=0.017  Sum_probs=151.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc--c-c-cCCCeEEEEec-CCCHHHHHHHHhccCceeEEeec
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT--A-I-QSSSYCFISCD-LLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~--~-~-~~~~~~~~~~D-~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      +++|+||||||+||++|+++|+ ..|++|++++|++++.  . . ...+++++.+| ++|.+++.++++++|.|+|++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAA-AVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            5789999999999999999999 5799999999987653  1 1 12478999999 99999999999999988887543


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHH
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLE  182 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~  182 (303)
                      .  .         .+.|..+ .++++++++.+ ++.+++++|+...     ..+        .+    .+..+   |..+
T Consensus        84 ~--~---------~~~~~~~-~~l~~aa~~~g-~v~~~V~~SS~~~-----~~~--------~~----~~~~~---y~~s  130 (352)
T 1xgk_A           84 Q--A---------GDEIAIG-KDLADAAKRAG-TIQHYIYSSMPDH-----SLY--------GP----WPAVP---MWAP  130 (352)
T ss_dssp             T--T---------SCHHHHH-HHHHHHHHHHS-CCSEEEEEECCCG-----GGT--------SS----CCCCT---TTHH
T ss_pred             C--C---------cHHHHHH-HHHHHHHHHcC-CccEEEEeCCccc-----ccc--------CC----CCCcc---HHHH
Confidence            1  1         1235556 88999998764 1345555544210     001        00    11234   6777


Q ss_pred             HHHHHHh-cCC-cceEEecCCceeecCCCCc-cchhhHHHHHHHHhhhCCCc-eeeCCchhhhhhhcccCccH-HHHHHH
Q 042242          183 DLLKEKL-AGK-VAWSVHRPGLLLGSSHRSL-YNFLGCLCVYGAVCKHLNLP-FVFGGTREIWEEYCLDGSDS-RLVAEQ  257 (303)
Q Consensus       183 k~~~e~~-~~~-~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-~d~a~a  257 (303)
                      |...|.. ... ++++++||+ +||++.... ..++..      .....+.. +..++..    ....+++++ +|+|++
T Consensus       131 K~~~E~~~~~~gi~~~ivrpg-~~g~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~----~~~~~~i~v~~Dva~a  199 (352)
T 1xgk_A          131 KFTVENYVRQLGLPSTFVYAG-IYNNNFTSLPYPLFQM------ELMPDGTFEWHAPFDP----DIPLPWLDAEHDVGPA  199 (352)
T ss_dssp             HHHHHHHHHTSSSCEEEEEEC-EEGGGCBSSSCSSCBE------EECTTSCEEEEESSCT----TSCEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEecc-eecCCchhcccccccc------cccCCCceEEeeccCC----CCceeeEecHHHHHHH
Confidence            7777632 222 999999976 688543211 011000      00011322 1234332    455678898 899999


Q ss_pred             HHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          258 HIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       258 ~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++.++..+... ..+++||+++ +.+|+.|+++.+++.+|++.+
T Consensus       200 i~~~l~~~~~~-~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~  241 (352)
T 1xgk_A          200 LLQIFKDGPQK-WNGHRIALTF-ETLSPVQVCAAFSRALNRRVT  241 (352)
T ss_dssp             HHHHHHHCHHH-HTTCEEEECS-EEECHHHHHHHHHHHHTSCEE
T ss_pred             HHHHHhCCchh-hCCeEEEEec-CCCCHHHHHHHHHHHHCCCCc
Confidence            99988764210 1248999995 679999999999999998753

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.86  E-value=8.1e-21  Score=161.04  Aligned_cols=233  Identities=12%  Similarity=0.055  Sum_probs=156.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+.....     . ...++.++.+|++|.++++++++       .
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   92 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   92 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            456899999999999999999999 68999999999764321     1 11268899999999999988887       5


Q ss_pred             cCceeEEeeccc------ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 LEDVTHIFWVTW------ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ~~~V~~~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      +|.|+|.++...      ...+..+..+.+++|+.++.++++++....  .+..+++.+++...|...          + 
T Consensus        93 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------~-  161 (278)
T 2bgk_A           93 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG----------E-  161 (278)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC----------T-
T ss_pred             CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC----------C-
Confidence            677888876432      122334555689999999999999887651  234566666654444211          0 


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+..+   |+.+|...+     +.     .+ ++++++||+.++++............  ...+...  .+   
T Consensus       162 ------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~~--~~~~~~~--~~---  224 (278)
T 2bgk_A          162 ------GVSHV---YTATKHAVLGLTTSLCTELGEYG-IRVNCVSPYIVASPLLTDVFGVDSSR--VEELAHQ--AA---  224 (278)
T ss_dssp             ------TSCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCCSCCCCTTSSSCCHHH--HHHHHHH--TC---
T ss_pred             ------CCCcc---hHHHHHHHHHHHHHHHHHHhhcC-cEEEEEEeceecchhhhhhcccchhH--HHHhhhc--cc---
Confidence                  01223   777776554     11     24 99999999999996433211100110  0111111  01   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                              .....+.+++|+|+++++++..+... ..|+.|++.++..+++.|+++.+++++
T Consensus       225 --------~~~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~~~~~~e~~~~i~~~~  277 (278)
T 2bgk_A          225 --------NLKGTLLRAEDVADAVAYLAGDESKY-VSGLNLVIDGGYTRTNPAFPTALKHGL  277 (278)
T ss_dssp             --------SSCSCCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred             --------ccccccCCHHHHHHHHHHHcCccccc-CCCCEEEECCcccccCCccchhhhhhc
Confidence                    01123678999999999988654321 345899999999999999999987654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.86  E-value=2.4e-21  Score=160.96  Aligned_cols=206  Identities=16%  Similarity=0.075  Sum_probs=140.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~  103 (303)
                      ++|+|+||||+|+||++++++|+ ..|+  +|++++|++.+.. ....+++++.+|+.|.+++.++++++|.|+|+++..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~-~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHH-cCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            45899999999999999999999 5788  9999999876532 122468899999999999999999999899997753


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHH
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLED  183 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k  183 (303)
                      ...   ....+.+++|+.++.++++++++..  ..+++++|+...|..                    +..+   |+.+|
T Consensus        96 ~~~---~~~~~~~~~n~~~~~~~~~~~~~~~--~~~iv~~SS~~~~~~--------------------~~~~---Y~~sK  147 (242)
T 2bka_A           96 RGK---AGAEGFVRVDRDYVLKSAELAKAGG--CKHFNLLSSKGADKS--------------------SNFL---YLQVK  147 (242)
T ss_dssp             HHH---HHHHHHHHHHTHHHHHHHHHHHHTT--CCEEEEECCTTCCTT--------------------CSSH---HHHHH
T ss_pred             ccc---CCcccceeeeHHHHHHHHHHHHHCC--CCEEEEEccCcCCCC--------------------Ccch---HHHHH
Confidence            221   2234578999999999999998763  346666665434311                    1234   88888


Q ss_pred             HHHHHh-cCC-c-ceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          184 LLKEKL-AGK-V-AWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       184 ~~~e~~-~~~-~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      ...+.. +.. + +++++||+.++|+....  .. ... .......  ..|    ...     ....+++++|+|++++.
T Consensus       148 ~~~e~~~~~~~~~~~~~vrpg~v~~~~~~~--~~-~~~-~~~~~~~--~~~----~~~-----~~~~~~~~~dva~~~~~  212 (242)
T 2bka_A          148 GEVEAKVEELKFDRYSVFRPGVLLCDRQES--RP-GEW-LVRKFFG--SLP----DSW-----ASGHSVPVVTVVRAMLN  212 (242)
T ss_dssp             HHHHHHHHTTCCSEEEEEECCEEECTTGGG--SH-HHH-HHHHHHC--SCC----TTG-----GGGTEEEHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEcCceecCCCCCC--cH-HHH-HHHHhhc--ccC----ccc-----cCCcccCHHHHHHHHHH
Confidence            877743 232 7 59999999999963221  11 110 0111111  112    110     11236899999999999


Q ss_pred             HhcCcCCcCCCCceEEeecC
Q 042242          261 VATNDDISSTKGQAFNAING  280 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~~  280 (303)
                      ++.++...    +.|++.++
T Consensus       213 ~~~~~~~~----~~~~~~~~  228 (242)
T 2bka_A          213 NVVRPRDK----QMELLENK  228 (242)
T ss_dssp             HHTSCCCS----SEEEEEHH
T ss_pred             HHhCcccc----CeeEeeHH
Confidence            99877542    45666543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.86  E-value=3.1e-20  Score=153.72  Aligned_cols=206  Identities=13%  Similarity=0.076  Sum_probs=129.6

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .++|+|+||||||||+||++|+++|+ ..| ++|++++|++.+.. ....+++++++|+.|.+++.++++++|.|+|+++
T Consensus        19 ~~~~mk~vlVtGatG~iG~~l~~~L~-~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~   97 (236)
T 3qvo_A           19 FQGHMKNVLILGAGGQIARHVINQLA-DKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT   97 (236)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHT-TCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred             ecCcccEEEEEeCCcHHHHHHHHHHH-hCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence            34567899999999999999999999 678 89999999877643 2345899999999999999999999998888865


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVL  181 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~  181 (303)
                      ...     .         ...+.++++++++..  ..+++++|+..+|+.....     ..+..+..+   ..+...|..
T Consensus        98 ~~~-----~---------~~~~~~~~~~~~~~~--~~~iV~iSS~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~  153 (236)
T 3qvo_A           98 GED-----L---------DIQANSVIAAMKACD--VKRLIFVLSLGIYDEVPGK-----FVEWNNAVI---GEPLKPFRR  153 (236)
T ss_dssp             STT-----H---------HHHHHHHHHHHHHTT--CCEEEEECCCCC------------------------CGGGHHHHH
T ss_pred             CCc-----h---------hHHHHHHHHHHHHcC--CCEEEEEecceecCCCCcc-----cccchhhcc---cchHHHHHH
Confidence            311     1         123557888888763  4466666665566433110     111222222   122111433


Q ss_pred             HHHHHHHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          182 EDLLKEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       182 ~k~~~e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      .+...+ ..+ ++++++||+.++++..... .                  ....+.     .....+++.+|+|++++++
T Consensus       154 ~~~~l~-~~g-i~~~~vrPg~i~~~~~~~~-~------------------~~~~~~-----~~~~~~i~~~DvA~~i~~l  207 (236)
T 3qvo_A          154 AADAIE-ASG-LEYTILRPAWLTDEDIIDY-E------------------LTSRNE-----PFKGTIVSRKSVAALITDI  207 (236)
T ss_dssp             HHHHHH-TSC-SEEEEEEECEEECCSCCCC-E------------------EECTTS-----CCSCSEEEHHHHHHHHHHH
T ss_pred             HHHHHH-HCC-CCEEEEeCCcccCCCCcce-E------------------EeccCC-----CCCCcEECHHHHHHHHHHH
Confidence            322211 224 9999999999998532211 0                  010110     0011367899999999999


Q ss_pred             hcCcCCcCCCCceEEeecCCC
Q 042242          262 ATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~~~~  282 (303)
                      +..+..  ..++.|++++++.
T Consensus       208 l~~~~~--~~g~~~~i~~~~~  226 (236)
T 3qvo_A          208 IDKPEK--HIGENIGINQPGT  226 (236)
T ss_dssp             HHSTTT--TTTEEEEEECSSC
T ss_pred             HcCccc--ccCeeEEecCCCC
Confidence            988763  2248999998764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.84  E-value=3.8e-20  Score=158.83  Aligned_cols=235  Identities=13%  Similarity=0.019  Sum_probs=155.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------c-CCCeEEEEecCCCHHHHHHHHhcc---
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------Q-SSSYCFISCDLLNPLDIKRKLTLL---   93 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~-~~~~~~~~~D~~~~~~l~~~~~~~---   93 (303)
                      .+++|+|+||||+|+||++++++|+ +.|++|++++|++.+...       . ..++.++.+|++|.+++.++++.+   
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLS-SLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999999 689999999998654320       0 356889999999999998888765   


Q ss_pred             ----CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccC
Q 042242           94 ----EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        94 ----~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                          |.|+|+|+....    .....+..+.+++|+.++.++++++....   ....+++.+++...+.+.          
T Consensus       102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  171 (302)
T 1w6u_A          102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS----------  171 (302)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC----------
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC----------
Confidence                668898775322    23445555689999999999988886541   123456666553332110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              .+..+   |+.+|...+     +.     .+ ++++++||+.++++.......  ........+..  ..| 
T Consensus       172 --------~~~~~---Y~~sK~a~~~~~~~la~~~~~~g-i~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~--~~p-  234 (302)
T 1w6u_A          172 --------GFVVP---SASAKAGVEAMSKSLAAEWGKYG-MRFNVIQPGPIKTKGAFSRLD--PTGTFEKEMIG--RIP-  234 (302)
T ss_dssp             --------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCC------CC--TTSHHHHHHHT--TCT-
T ss_pred             --------CCcch---hHHHHHHHHHHHHHHHHHhhhcC-cEEEEEeeccCCCcchhhhcc--cchhhHHHHHh--cCC-
Confidence                    01223   777766554     11     23 999999999999852111110  00000001111  111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                                  ...+.+++|+|.++++++..+... ..|+.|++.++..+++.++++.+.+..|.++
T Consensus       235 ------------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~~~~~~~~~~~~~~~~g~~~  289 (302)
T 1w6u_A          235 ------------CGRLGTVEELANLAAFLCSDYASW-INGAVIKFDGGEEVLISGEFNDLRKVTKEQW  289 (302)
T ss_dssp             ------------TSSCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTHHHHHHSTTGGGGGCCHHHH
T ss_pred             ------------cCCCCCHHHHHHHHHHHcCCcccc-cCCCEEEECCCeeeccCCccccchhhccccc
Confidence                        112568899999999888654321 2458999999998999999888887766543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.84  E-value=2e-19  Score=152.70  Aligned_cols=233  Identities=14%  Similarity=0.046  Sum_probs=148.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~   95 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|+.....    ....+++++.+|++|.+++.++++       .+|.
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~   82 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAV-AAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDV   82 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            46899999999999999999999 68999999999876532    123578999999999999888887       4577


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      |+|+|+....    ..+..+..+.+++|+.++..+.+++...  .....+++.+|+...+..                  
T Consensus        83 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------------  144 (281)
T 3m1a_A           83 LVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS------------------  144 (281)
T ss_dssp             EEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------------
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCC------------------
Confidence            9999765432    3344555568999999965555555432  112335555554322211                  


Q ss_pred             CCCCCccchHHHHHHHHHH---------h-cCCcceEEecCCceeecCCCCcc----chhhHHHHHHHHhhhCCCceeeC
Q 042242          170 RVSKSNNFYYVLEDLLKEK---------L-AGKVAWSVHRPGLLLGSSHRSLY----NFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e~---------~-~~~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                      ..+..+   |+.+|...+.         . .+ ++++++||+.+.++......    .....+........    +.. .
T Consensus       145 ~~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~  215 (281)
T 3m1a_A          145 FAGFSA---YSATKAALEQLSEGLADEVAPFG-IKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTR----QLV-Q  215 (281)
T ss_dssp             CTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHH----HHH-H
T ss_pred             CCCchH---HHHHHHHHHHHHHHHHHHhhccC-cEEEEEecCccccccccccccccCCcchhhHHHhHHHH----HHH-h
Confidence            011233   8887775551         1 23 99999999999885322110    00011100000000    000 0


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFG  297 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g  297 (303)
                      +      .....+.+++|+|++++.++..+..    +..|+++++....+.+....+.+.++
T Consensus       216 ~------~~~~~~~~~~dva~a~~~~~~~~~~----~~~~~l~s~~~~~i~g~~~~i~~~~~  267 (281)
T 3m1a_A          216 G------SDGSQPGDPAKAAAAIRLALDTEKT----PLRLALGGDAVDFLTGHLDSVRAELT  267 (281)
T ss_dssp             C-----------CBCHHHHHHHHHHHHHSSSC----CSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred             h------ccCCCCCCHHHHHHHHHHHHhCCCC----CeEEecCchHHHHHHHHHHHHHHHHH
Confidence            0      1122367899999999999887643    36899998877777777777766543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.83  E-value=3.1e-19  Score=151.55  Aligned_cols=233  Identities=14%  Similarity=0.095  Sum_probs=155.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc--C---CCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ--S---SSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~--~---~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      .++|+|+||||+|+||++++++|+ +.|++|++++|++....     ..  .   .++.++.+|++|.++++++++.   
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLV-AAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999999 68999999999875432     11  1   1678899999999998887764   


Q ss_pred             ----cCceeEEeecc-----cccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCccccc
Q 042242           93 ----LEDVTHIFWVT-----WASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 ----~~~V~~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                          +|.++|.|+..     ....+..+..+.+++|+.++.++++++....  .+-.+++.+++...+...         
T Consensus        88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------  158 (281)
T 3svt_A           88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH---------  158 (281)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC---------
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC---------
Confidence                46688887752     2233445556689999999999999887651  222355555543333111         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                               .+..+   |+.+|...+         +. .+ +++.+++|+.+.++.....   .........+..  ..|
T Consensus       159 ---------~~~~~---Y~asK~a~~~l~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~--~~p  220 (281)
T 3svt_A          159 ---------RWFGA---YGVTKSAVDHLMQLAADELGASW-VRVNSIRPGLIRTDLVAAI---TESAELSSDYAM--CTP  220 (281)
T ss_dssp             ---------TTCTH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSGGGHHH---HTCHHHHHHHHH--HCS
T ss_pred             ---------CCChh---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEEeCcCcCcchhhc---ccCHHHHHHHHh--cCC
Confidence                     01223   777776554         11 23 9999999999988421110   000000001111  111


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc-HHhhHHHHHHHhcccC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT-WKEIWPSIGKKFGVKV  300 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s-~~e~~~~i~~~~g~~~  300 (303)
                                   +..+.+++|+|.++++++...... ..|+.|++.++..++ ..++.+.+.+.+|.+.
T Consensus       221 -------------~~r~~~~~dva~~~~~l~s~~~~~-itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~  276 (281)
T 3svt_A          221 -------------LPRQGEVEDVANMAMFLLSDAASF-VTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA  276 (281)
T ss_dssp             -------------SSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred             -------------CCCCCCHHHHHHHHHHHhCcccCC-CCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence                         123567899999999988654332 346999999998777 8899999999998764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.83  E-value=3e-19  Score=146.25  Aligned_cols=200  Identities=11%  Similarity=0.090  Sum_probs=131.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc-ccc-c--cCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-ITA-I--QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~-~~~-~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      +|+|+|+||||||+||++++++|++..|++|++++|++. +.. .  ...+++++.+|+.|.+++.++++++|.|+|+++
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag   82 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM   82 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence            456789999999999999999998347999999999876 433 1  456899999999999999999999998999876


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC-ccchHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS-NNFYYV  180 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~-~~~~y~  180 (303)
                      ..               |+. +.++++++++.+  ..+++++|+...|.....        +..+..... .. +   |.
T Consensus        83 ~~---------------n~~-~~~~~~~~~~~~--~~~iv~iSs~~~~~~~~~--------~~~~~~~~~-~~~~---y~  132 (221)
T 3r6d_A           83 ES---------------GSD-MASIVKALSRXN--IRRVIGVSMAGLSGEFPV--------ALEKWTFDN-LPIS---YV  132 (221)
T ss_dssp             CC---------------HHH-HHHHHHHHHHTT--CCEEEEEEETTTTSCSCH--------HHHHHHHHT-SCHH---HH
T ss_pred             CC---------------Chh-HHHHHHHHHhcC--CCeEEEEeeceecCCCCc--------ccccccccc-cccH---HH
Confidence            42               233 788999988763  335555555445532210        000000000 11 3   77


Q ss_pred             HHHHHHHH---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHH
Q 042242          181 LEDLLKEK---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQ  257 (303)
Q Consensus       181 ~~k~~~e~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a  257 (303)
                      .+|...+.   ..+ ++++++||+.++++.......                  ....+.     .....+++.+|+|++
T Consensus       133 ~~K~~~e~~~~~~~-i~~~~vrpg~v~~~~~~~~~~------------------~~~~~~-----~~~~~~~~~~dvA~~  188 (221)
T 3r6d_A          133 QGERQARNVLRESN-LNYTILRLTWLYNDPEXTDYE------------------LIPEGA-----QFNDAQVSREAVVKA  188 (221)
T ss_dssp             HHHHHHHHHHHHSC-SEEEEEEECEEECCTTCCCCE------------------EECTTS-----CCCCCEEEHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CCEEEEechhhcCCCCCccee------------------eccCCc-----cCCCceeeHHHHHHH
Confidence            77766662   224 999999999999852111110                  000000     000125678999999


Q ss_pred             HHHHh--cCcCCcCCCCceEEeecCC
Q 042242          258 HIWVA--TNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       258 ~~~~~--~~~~~~~~~g~~yni~~~~  281 (303)
                      +++++  .++..  ..++.+.+.++.
T Consensus       189 ~~~l~~~~~~~~--~~~~~~~i~~~~  212 (221)
T 3r6d_A          189 IFDILHAADETP--FHRTSIGVGEPG  212 (221)
T ss_dssp             HHHHHTCSCCGG--GTTEEEEEECTT
T ss_pred             HHHHHHhcChhh--hhcceeeecCCC
Confidence            99999  66653  223678887654

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.83  E-value=2.2e-19  Score=150.21  Aligned_cols=218  Identities=13%  Similarity=0.096  Sum_probs=144.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|++|.++++++++       
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   87 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            456899999999999999999999 68999999999865421       113468889999999999988886       


Q ss_pred             ccCceeEEeecccc---cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           92 LLEDVTHIFWVTWA---SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        92 ~~~~V~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      .+|.|+|+++....   ..+..+..+.+++|+.++.++++++...  .....+++.+|+...|...              
T Consensus        88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------  153 (255)
T 1fmc_A           88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN--------------  153 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC--------------
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC--------------
Confidence            66779998765432   2334555568999999999999988643  1123455665553333110              


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                          .+..+   |+.+|...+     +.   ... ++++++||+.++++......  ....  ...+..  +.|      
T Consensus       154 ----~~~~~---Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~~~~--~~~~~~--~~~------  214 (255)
T 1fmc_A          154 ----INMTS---YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEI--EQKMLQ--HTP------  214 (255)
T ss_dssp             ----TTCHH---HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHH--HHHHHH--TCS------
T ss_pred             ----CCCcc---cHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhcc--ChHH--HHHHHh--cCC------
Confidence                01223   777766554     11   122 99999999999985321110  0111  011111  122      


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccH
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTW  285 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~  285 (303)
                             +..+.+++|+|+++++++..+... ..|+.||++++...|+
T Consensus       215 -------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~~~s~  254 (255)
T 1fmc_A          215 -------IRRLGQPQDIANAALFLCSPAASW-VSGQILTVSGGGVQEL  254 (255)
T ss_dssp             -------SCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSCCCC
T ss_pred             -------cccCCCHHHHHHHHHHHhCCcccc-CCCcEEEECCceeccC
Confidence                   112568899999999988654321 2358999999988775

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.82  E-value=1.6e-19  Score=153.13  Aligned_cols=232  Identities=13%  Similarity=0.081  Sum_probs=138.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---c--CCCeEEEEecCCCHHHHHHHHh----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---Q--SSSYCFISCDLLNPLDIKRKLT----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~--~~~~~~~~~D~~~~~~l~~~~~----   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..     .   .  ..++.++.+|++|.++++++++    
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            456899999999999999999999 68999999999865421     1   1  1357889999999999988887    


Q ss_pred             ---ccCceeEEeeccccc----C----ChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccc-cccccCCCc
Q 042242           92 ---LLEDVTHIFWVTWAS----Q----FASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKH-YVSLQGLPE  157 (303)
Q Consensus        92 ---~~~~V~~~~~~~~~~----~----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~-y~~~~~~~g  157 (303)
                         .+|.++|.++.....    .    +..+..+.+++|+.++.++++++....  .. .+++.+|+... +...     
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~-----  156 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT-----  156 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC-----
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCC-----
Confidence               667788887653221    1    444455689999999999999887651  12 45555554322 2100     


Q ss_pred             ccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHH----HHH
Q 042242          158 EKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCV----YGA  223 (303)
Q Consensus       158 ~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~----~~~  223 (303)
                                 +  +...   |+.+|...+         .. .+ ++++++||+.+.++..............    ...
T Consensus       157 -----------~--~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~  219 (278)
T 1spx_A          157 -----------P--DFPY---YSIAKAAIDQYTRNTAIDLIQHG-IRVNSISPGLVATGFGSAMGMPEETSKKFYSTMAT  219 (278)
T ss_dssp             -----------T--TSHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBCCCC--------------HHHHHH
T ss_pred             -----------C--CccH---HHHHHHHHHHHHHHHHHHHHhcC-cEEEEEecCcccCccccccccCchhhhhhhHHHHH
Confidence                       0  0122   777666544         11 24 9999999999998532211000000000    000


Q ss_pred             HhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          224 VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                      +..  ..|             ...+.+++|+|.++++++..+......|+.|++.++..+++.|+++.+++++
T Consensus       220 ~~~--~~p-------------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~  277 (278)
T 1spx_A          220 MKE--CVP-------------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL  277 (278)
T ss_dssp             HHH--HCT-------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred             HHh--cCC-------------CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence            110  011             1236788999999999886543210124899999999999999999998765

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.82  E-value=4.1e-19  Score=147.62  Aligned_cols=215  Identities=10%  Similarity=0.018  Sum_probs=141.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhc---cCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~   99 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..   ....+++++.+|++|.++++++++.   +|.|+|+
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALH-ASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   83 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence            456899999999999999999999 68999999999865432   1124678889999999999999874   4668898


Q ss_pred             eeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242          100 FWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KA-LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus       100 ~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      ++...    ......+..+.+++|+.++.++++++....  .+ ..+++++|+...|...                  .+
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~~  145 (244)
T 1cyd_A           84 AALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------------PN  145 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------------TT
T ss_pred             CcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------------------CC
Confidence            77432    222344555689999999999999887651  12 3456666654343111                  00


Q ss_pred             CCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          173 KSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      ..+   |+.+|...+     +.     .+ ++++++||+.++++....... ...+  ...+.+  +             
T Consensus       146 ~~~---Y~~sK~a~~~~~~~~a~~~~~~g-i~v~~v~pg~v~t~~~~~~~~-~~~~--~~~~~~--~-------------  203 (244)
T 1cyd_A          146 LIT---YSSTKGAMTMLTKAMAMELGPHK-IRVNSVNPTVVLTDMGKKVSA-DPEF--ARKLKE--R-------------  203 (244)
T ss_dssp             BHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBTTHHHHHHTC-CHHH--HHHHHH--H-------------
T ss_pred             cch---hHHHHHHHHHHHHHHHHHhhhcC-eEEEEEecCcccCcccccccc-CHHH--HHHHHh--c-------------
Confidence            123   777766554     11     23 999999999999842110000 0000  011111  1             


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ..+..+.+++|+|+++++++..+... ..|+.+++.++..
T Consensus       204 ~~~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~~  242 (244)
T 1cyd_A          204 HPLRKFAEVEDVVNSILFLLSDRSAS-TSGGGILVDAGYL  242 (244)
T ss_dssp             STTSSCBCHHHHHHHHHHHHSGGGTT-CCSSEEEESTTGG
T ss_pred             CCccCCCCHHHHHHHHHHHhCchhhc-ccCCEEEECCCcc
Confidence            11234778999999999988765322 3458898888754

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.81  E-value=5.4e-19  Score=146.63  Aligned_cols=208  Identities=14%  Similarity=0.126  Sum_probs=138.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh------ccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT------LLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~------~~~~V~~~~  100 (303)
                      |+|+|+||||+|+||++++++|+ +.|++|++++|++.     ...+.++.+|++|.+++.++++      .+|.++|++
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~-~~G~~V~~~~r~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~a   74 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALK-ARGYRVVVLDLRRE-----GEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAA   74 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HHTCEEEEEESSCC-----SSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEccCcc-----ccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcc
Confidence            46899999999999999999999 67999999999875     2356889999999999998887      456688887


Q ss_pred             ecccccC--------ChHHHHHHHHHHHHHHHHHHHHHhhccCC--------ccEEEEeecccccccccCCCcccccCCc
Q 042242          101 WVTWASQ--------FASDMHKCCEQNKAMMCNALNAILPRAKA--------LKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus       101 ~~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--------~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      +......        +..+..+.+++|+.++.++++++.....+        ..+++++++...|...            
T Consensus        75 g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  142 (242)
T 1uay_A           75 GVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ------------  142 (242)
T ss_dssp             CCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC------------
T ss_pred             cccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC------------
Confidence            6532211        11244568999999999999998765221        1266666654343111            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+..+   |+.+|...+         .. .+ ++++++||+.++++.....   ....  ...+..  ..|+  
T Consensus       143 ------~~~~~---Y~~sK~a~~~~~~~l~~e~~~~g-i~v~~v~Pg~v~t~~~~~~---~~~~--~~~~~~--~~~~--  203 (242)
T 1uay_A          143 ------IGQAA---YAASKGGVVALTLPAARELAGWG-IRVVTVAPGLFDTPLLQGL---PEKA--KASLAA--QVPF--  203 (242)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSCSSHHHHTS---CHHH--HHHHHT--TCCS--
T ss_pred             ------CCCch---hhHHHHHHHHHHHHHHHHHhhcC-cEEEEEEeccCcchhhhcc---chhH--HHHHHh--hCCC--
Confidence                  01223   777765443         11 24 9999999999998532111   0110  111111  1221  


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      ++          .+.+++|+|+++++++..+..   .|+.|++.++..++
T Consensus       204 ~~----------~~~~~~dva~~~~~l~~~~~~---~G~~~~v~gG~~~~  240 (242)
T 1uay_A          204 PP----------RLGRPEEYAALVLHILENPML---NGEVVRLDGALRMA  240 (242)
T ss_dssp             SC----------SCCCHHHHHHHHHHHHHCTTC---CSCEEEESTTCCCC
T ss_pred             cc----------cCCCHHHHHHHHHHHhcCCCC---CCcEEEEcCCeecC
Confidence            11          256889999999998877433   35899999887654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.81  E-value=1.2e-18  Score=146.28  Aligned_cols=224  Identities=11%  Similarity=-0.009  Sum_probs=143.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~   95 (303)
                      .+|+||||||+|+||++++++|+ +.|++|++++|+.....    ....++.++++|++|.++++++++       .+|.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYV-REGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999 68999999999865432    123568899999999999888887       5677


Q ss_pred             eeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           96 VTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        96 V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      ++|.|+...    ...+..+..+.+++|+.++.++++++....   ..-.+++.+++...+.+.                
T Consensus        86 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------  149 (259)
T 4e6p_A           86 LVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE----------------  149 (259)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------------
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC----------------
Confidence            889877532    222445556689999999999999887651   112355555543232110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhC-CCceeeCCc
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHL-NLPFVFGGT  237 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  237 (303)
                        .+..+   |+.+|...+         +. .+ +++.+++|+.++++.....    ..  .+....... .......  
T Consensus       150 --~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~----~~--~~~~~~~~~~~~~~~~~--  215 (259)
T 4e6p_A          150 --ALVAI---YCATKAAVISLTQSAGLDLIKHR-INVNAIAPGVVDGEHWDGV----DA--LFARYENRPRGEKKRLV--  215 (259)
T ss_dssp             --TTBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCSTTHHHH----HH--HHHHHHTCCTTHHHHHH--
T ss_pred             --CCChH---HHHHHHHHHHHHHHHHHHhhhcC-CEEEEEEECCCccchhhhh----hh--hhhhhccCChHHHHHHH--
Confidence              00122   777766554         11 24 9999999999998421110    00  000010000 0000000  


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                       ... ..+..+.+++|+|.++++++...... ..|+.|++.+|..+|
T Consensus       216 -~~~-~p~~r~~~~~dva~~v~~L~s~~~~~-itG~~i~vdgG~~~s  259 (259)
T 4e6p_A          216 -GEA-VPFGRMGTAEDLTGMAIFLASAESDY-IVSQTYNVDGGNWMS  259 (259)
T ss_dssp             -HHH-STTSSCBCTHHHHHHHHHTTSGGGTT-CCSCEEEESTTSSCC
T ss_pred             -hcc-CCCCCCcCHHHHHHHHHHHhCCccCC-CCCCEEEECcChhcC
Confidence             000 23345778899999998887644322 346899999987654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.81  E-value=1.3e-19  Score=151.53  Aligned_cols=224  Identities=16%  Similarity=0.073  Sum_probs=142.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh----ccCceeEEeeccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT----LLEDVTHIFWVTW  104 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~----~~~~V~~~~~~~~  104 (303)
                      |+||||||+|+||++++++|+ +.|++|++++|++.+...      .+.+|+.|.++++++++    ++|.|+|+++...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~   74 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLA-RAGHTVIGIDRGQADIEA------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGV   74 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSSSSEEC------CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCCT
T ss_pred             cEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEeCChhHccc------cccCCcccHHHHHHHHHHcCCCccEEEECCCCCC
Confidence            689999999999999999999 689999999998765321      15689999999988887    6677999977543


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc-------CcCCCCC----
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY-------DEECPRV----  171 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~-------~e~~~~~----  171 (303)
                      ....   ..+.+++|+.++.++++++.+.  .....+++++|+...|.....      ..+.       +|+.+..    
T Consensus        75 ~~~~---~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  145 (255)
T 2dkn_A           75 TAAN---SGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA------ELPMVEAMLAGDEARAIELAEQ  145 (255)
T ss_dssp             TSSC---HHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGG------GCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cchh---HHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccccc------ccchhhhhcccchhhhhhhccc
Confidence            2222   2347999999999999988765  223456777766656633211      0011       0110000    


Q ss_pred             CCCccchHHHHHHHHHH-----h-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          172 SKSNNFYYVLEDLLKEK-----L-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~-----~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      +..+...|+.+|...+.     .     .+ ++++++||+.++|+....   ..... .......      .+.+     
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~g-i~v~~v~pg~v~~~~~~~---~~~~~-~~~~~~~------~~~~-----  209 (255)
T 2dkn_A          146 QGQTHLAYAGSKYAVTCLARRNVVDWAGRG-VRLNVVAPGAVETPLLQA---SKADP-RYGESTR------RFVA-----  209 (255)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHTHHHHHHTT-CEEEEEEECCBCSHHHHH---HHHCT-TTHHHHH------SCCC-----
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHhhcC-cEEEEEcCCcccchhhhh---cccch-hhHHHHH------HHHH-----
Confidence            00122338887776551     1     24 999999999999842110   00000 0000000      0000     


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHh
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                        ....+++++|+|+++++++..+... ..|+.||++++..++++|
T Consensus       210 --~~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~~~~~~e  252 (255)
T 2dkn_A          210 --PLGRGSEPREVAEAIAFLLGPQASF-IHGSVLFVDGGMDALMRA  252 (255)
T ss_dssp             --TTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTHHHHHCT
T ss_pred             --HhcCCCCHHHHHHHHHHHhCCCccc-ceeeEEEecCCeEeeeec
Confidence              1124789999999999998765321 235899999998777665

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.81  E-value=1.9e-18  Score=144.94  Aligned_cols=209  Identities=15%  Similarity=0.125  Sum_probs=139.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~~   99 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|+....  ...++.++.+|++|.++++++++       .+|.++|.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n  103 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYR-DRNYRVVATSRSIKPS--ADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNN  103 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSCCCC--SSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChhhc--ccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence            46899999999999999999999 6899999999987543  23478899999999999888877       56778888


Q ss_pred             eecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242          100 FWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus       100 ~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      |+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...                +   .
T Consensus       104 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----------------~---~  164 (260)
T 3un1_A          104 AGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM----------------V---G  164 (260)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB----------------T---T
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC----------------C---C
Confidence            765432    2244555568999999999999987543  1223455555543222100                0   1


Q ss_pred             CccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhh
Q 042242          174 SNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       174 ~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (303)
                      .+...|+.+|...+        ..... +++.+++|+.++++.....     ..   ..+..  ..|             
T Consensus       165 ~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-----~~---~~~~~--~~p-------------  221 (260)
T 3un1_A          165 MPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE-----TH---STLAG--LHP-------------  221 (260)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG-----GH---HHHHT--TST-------------
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH-----HH---HHHhc--cCC-------------
Confidence            12223777666544        11122 9999999999998532211     00   00110  112             


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      ...+.+++|+|.+++++......   .|+.|++.+|...
T Consensus       222 ~~r~~~~~dva~av~~L~~~~~i---tG~~i~vdGG~~~  257 (260)
T 3un1_A          222 VGRMGEIRDVVDAVLYLEHAGFI---TGEILHVDGGQNA  257 (260)
T ss_dssp             TSSCBCHHHHHHHHHHHHHCTTC---CSCEEEESTTGGG
T ss_pred             CCCCcCHHHHHHHHHHhcccCCC---CCcEEEECCCeec
Confidence            12356889999999988444433   3599999988654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.2e-18  Score=146.59  Aligned_cols=219  Identities=13%  Similarity=0.047  Sum_probs=138.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc--C-------CCeEEEEecCCCHHHHHHHHh
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ--S-------SSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~--~-------~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++....     ..  .       .++.++.+|++|.+++.++++
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLA-GEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            457899999999999999999999 68999999999865422     10  0       467889999999999988887


Q ss_pred             cc--------CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccC--C-ccEEEEeecccccccccCCC
Q 042242           92 LL--------EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAK--A-LKHVSLQTGMKHYVSLQGLP  156 (303)
Q Consensus        92 ~~--------~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~-~~~~~~~s~~~~y~~~~~~~  156 (303)
                      .+        |.|+|+++....    ..+..+..+.+++|+.++.++++++.+...  + ..+++.+|+...+.+.    
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~----  159 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN----  159 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC----
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC----
Confidence            64        678898765432    224455556899999999999999877511  1 2456665553222110    


Q ss_pred             cccccCCcCcCCCCCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhh
Q 042242          157 EEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCK  226 (303)
Q Consensus       157 g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  226 (303)
                                    .+...   |+.+|...+     +    . .+ ++++++||+.++++.....   ....  ...+..
T Consensus       160 --------------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~---~~~~--~~~~~~  216 (264)
T 2pd6_A          160 --------------VGQTN---YAASKAGVIGLTQTAARELGRHG-IRCNSVLPGFIATPMTQKV---PQKV--VDKITE  216 (264)
T ss_dssp             --------------TTBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSCC---------------CTGG
T ss_pred             --------------CCChh---hHHHHHHHHHHHHHHHHHhhhcC-eEEEEEeeecccccchhhc---CHHH--HHHHHH
Confidence                          00122   777776444     1    1 23 9999999999998532211   0000  000000


Q ss_pred             hCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhh
Q 042242          227 HLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEI  288 (303)
Q Consensus       227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~  288 (303)
                        .             ..+..+.+++|+|+++++++..+... ..|+.+++.++..+++...
T Consensus       217 --~-------------~~~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~~~~~~~~  262 (264)
T 2pd6_A          217 --M-------------IPMGHLGDPEDVADVVAFLASEDSGY-ITGTSVEVTGGLFMAENLY  262 (264)
T ss_dssp             --G-------------CTTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC-------
T ss_pred             --h-------------CCCCCCCCHHHHHHHHHHHcCCcccC-CCCCEEEECCCceeccccC
Confidence              0             11123568899999999888654321 3458999999887665544

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.80  E-value=6.6e-18  Score=141.66  Aligned_cols=217  Identities=12%  Similarity=0.039  Sum_probs=140.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|++|.++++++++       
T Consensus        11 l~~k~vlItGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALA-EAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEG   89 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999 68999999999865421       113468899999999999888876       


Q ss_pred             ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .+|.|+|+++...     ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...            
T Consensus        90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  157 (260)
T 3awd_A           90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN------------  157 (260)
T ss_dssp             CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC------------
Confidence            4677899876432     12234445568999999999999988764  1123455555543222100            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +   ..+...|+.+|...+     +.     .+ ++++++||+.++++.....  .... .....+..  ..|   
T Consensus       158 ----~---~~~~~~Y~~sK~a~~~~~~~l~~e~~~~g-i~v~~v~pg~v~t~~~~~~--~~~~-~~~~~~~~--~~~---  221 (260)
T 3awd_A          158 ----R---PQQQAAYNASKAGVHQYIRSLAAEWAPHG-IRANAVAPTYIETTLTRFG--MEKP-ELYDAWIA--GTP---  221 (260)
T ss_dssp             ----S---SSCCHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCCTTTHHH--HTCH-HHHHHHHH--TCT---
T ss_pred             ----C---CCCccccHHHHHHHHHHHHHHHHHhhhcC-eEEEEEEeeeeccchhhcc--cCCh-HHHHHHHh--cCC---
Confidence                1   111122887777554     11     23 9999999999999532201  0000 01111111  112   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                +..+.+++|+|+++++++..+... ..|+.|++.++..
T Consensus       222 ----------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~~  258 (260)
T 3awd_A          222 ----------MGRVGQPDEVASVVQFLASDAASL-MTGAIVNVDAGFT  258 (260)
T ss_dssp             ----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             ----------cCCCCCHHHHHHHHHHHhCchhcc-CCCcEEEECCcee
Confidence                      112668899999999888654321 3458999988753

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.79  E-value=6.7e-18  Score=140.78  Aligned_cols=213  Identities=14%  Similarity=0.149  Sum_probs=137.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-c--CCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-Q--SSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~--~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      |+|+|+||||+|+||++++++|+ +.|++|++++|++.+..     . .  ..++.++.+|++|.++++++++       
T Consensus         1 ~~k~vlItGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGLAIATRFL-ARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999 68999999999865421     1 1  2357889999999999888876       


Q ss_pred             ccCceeEEeecccc-------cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           92 LLEDVTHIFWVTWA-------SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 ~~~~V~~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                      .+|.|+|+++....       .....+..+.+++|+.++.++++.+...  ..+..+++.+++...+...          
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  149 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF----------  149 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----------
Confidence            56778898765322       2234455568899999998887776653  1123456665543332110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              .+..+   |+.+|...+     +    . .+ ++++++||+.++++.......  .. .....+..  ..| 
T Consensus       150 --------~~~~~---Y~~sK~a~~~~~~~l~~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~--~~-~~~~~~~~--~~~-  211 (250)
T 2cfc_A          150 --------PGRSA---YTTSKGAVLQLTKSVAVDYAGSG-IRCNAVCPGMIETPMTQWRLD--QP-ELRDQVLA--RIP-  211 (250)
T ss_dssp             --------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSTTTHHHHT--SH-HHHHHHHT--TCT-
T ss_pred             --------CCchh---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEEeCcCccCccccccC--CH-HHHHHHHh--cCC-
Confidence                    01223   777766554     1    1 14 999999999999953221000  00 00011111  112 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                  +..+.+++|+|.++++++..+... ..|+.+++.++.
T Consensus       212 ------------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~  247 (250)
T 2cfc_A          212 ------------QKEIGTAAQVADAVMFLAGEDATY-VNGAALVMDGAY  247 (250)
T ss_dssp             ------------TCSCBCHHHHHHHHHHHHSTTCTT-CCSCEEEESTTG
T ss_pred             ------------CCCCcCHHHHHHHHHHHcCchhhc-ccCCEEEECCce
Confidence                        112568899999999988765322 345889998774

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.79  E-value=3.6e-18  Score=141.89  Aligned_cols=215  Identities=10%  Similarity=0.046  Sum_probs=140.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhc---cCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~   99 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..   .+.++++++.+|++|.++++++++.   +|.|+|+
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEEC
Confidence            346899999999999999999999 68999999999865432   1124677889999999999999874   5668888


Q ss_pred             eecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242          100 FWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KA-LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus       100 ~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      ++....    ........+.+++|+.++.++++++....  .. ..+++.+++...+...                  .+
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~~  145 (244)
T 3d3w_A           84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------------TN  145 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------------TT
T ss_pred             CccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------------------CC
Confidence            765332    22344455689999999999998887641  11 3455665553332110                  01


Q ss_pred             CCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          173 KSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      ..+   |+.+|...+     +    . .+ ++++++||+.++++........ ...  ...+..  ..|           
T Consensus       146 ~~~---Y~~sK~a~~~~~~~la~e~~~~~-i~v~~v~Pg~v~t~~~~~~~~~-~~~--~~~~~~--~~~-----------  205 (244)
T 3d3w_A          146 HSV---YCSTKGALDMLTKVMALELGPHK-IRVNAVNPTVVMTSMGQATWSD-PHK--AKTMLN--RIP-----------  205 (244)
T ss_dssp             BHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBTTTTHHHHSCS-TTH--HHHHHH--TCT-----------
T ss_pred             Cch---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEEeccccccchhhhccC-hHH--HHHHHh--hCC-----------
Confidence            223   787776655     1    1 23 9999999999998421110000 000  000111  111           


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                        ...+.+++|+|+++++++..+... ..|+.|++.++..
T Consensus       206 --~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~~  242 (244)
T 3d3w_A          206 --LGKFAEVEHVVNAILFLLSDRSGM-TTGSTLPVEGGFW  242 (244)
T ss_dssp             --TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             --CCCCcCHHHHHHHHHHHcCccccC-CCCCEEEECCCcc
Confidence              123678999999999988754321 3458999988754

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.79  E-value=4.5e-18  Score=143.03  Aligned_cols=218  Identities=12%  Similarity=0.067  Sum_probs=141.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-----c---CCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-----Q---SSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-----~---~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+...     .   ..++.++.+|++|.+++.++++      
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFA-KEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            346899999999999999999999 689999999998654220     0   3468889999999999888876      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.++|.++....    .....+..+.+++|+.++.++++++...  ..+..+++.+++...|...            
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  151 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL------------  151 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC------------
Confidence             56778898765322    2244455568999999999999887653  1123455665554333110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhH--------HHHH-HHHh
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGC--------LCVY-GAVC  225 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~--------~~~~-~~~~  225 (303)
                            .+..+   |+.+|...+         +. .+ ++++++||+.++++....   ....        .... ..+.
T Consensus       152 ------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~~  218 (263)
T 3ai3_A          152 ------WYEPI---YNVTKAALMMFSKTLATEVIKDN-IRVNCINPGLILTPDWIK---TAKELTKDNGGDWKGYLQSVA  218 (263)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCCHHHHH---HHHHHTTTTTCCHHHHHHHHH
T ss_pred             ------CCcch---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEecCcccCcchhh---hhHhhhcccCCcHHHHHHHHH
Confidence                  00223   777666544         11 23 999999999999842110   0000        0000 0000


Q ss_pred             hhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          226 KHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      .. ..             ....+.+++|+|.++++++..+... ..|+.|++.++...|
T Consensus       219 ~~-~~-------------p~~~~~~~~dvA~~~~~l~s~~~~~-~~G~~~~vdgG~~~s  262 (263)
T 3ai3_A          219 DE-HA-------------PIKRFASPEELANFFVFLCSERATY-SVGSAYFVDGGMLKT  262 (263)
T ss_dssp             HH-HC-------------TTCSCBCHHHHHHHHHHHTSTTCTT-CCSCEEEESTTCCCC
T ss_pred             hc-CC-------------CCCCCcCHHHHHHHHHHHcCccccC-CCCcEEEECCCcccc
Confidence            00 01             1123678999999999988654322 345899999987665

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.79  E-value=3.5e-17  Score=138.12  Aligned_cols=228  Identities=15%  Similarity=0.037  Sum_probs=146.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +.+|+++||||+|+||++++++|+ +.|++|++++|+.....    ....++.++.+|++|.++++++++       .+|
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   87 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLA-RAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLD   87 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            456899999999999999999999 68999999999876532    123578899999999999888887       566


Q ss_pred             ceeEEeecccc------cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           95 DVTHIFWVTWA------SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        95 ~V~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      .++|.++....      ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...              
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~--------------  153 (271)
T 3tzq_B           88 IVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAY--------------  153 (271)
T ss_dssp             EEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBC--------------
T ss_pred             EEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCC--------------
Confidence            78888765422      2244555568999999999999998543  1223455555543332110              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          .+...   |+.+|...+         +. .+ +++.+++|+.++++.......  ...  ...+..  ..+     
T Consensus       154 ----~~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~~~--~~~--~~~~~~--~~~-----  214 (271)
T 3tzq_B          154 ----DMSTA---YACTKAAIETLTRYVATQYGRHG-VRCNAIAPGLVRTPRLEVGLP--QPI--VDIFAT--HHL-----  214 (271)
T ss_dssp             ----SSCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCCTTTC---C--HHH--HHHHHT--TST-----
T ss_pred             ----CCChH---HHHHHHHHHHHHHHHHHHHhhcC-EEEEEEEeCCCcCccccccCC--HHH--HHHHHh--cCC-----
Confidence                00223   777766554         11 23 999999999999854321111  110  011111  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                              ...+.+++|+|.++++++...... ..|+.+++.+|....+..+.+...+.+
T Consensus       215 --------~~r~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdGG~~~~~~~~~~~~~~~~  265 (271)
T 3tzq_B          215 --------AGRIGEPHEIAELVCFLASDRAAF-ITGQVIAADSGLLAHLPGLPQIRASVA  265 (271)
T ss_dssp             --------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTTTBCTTHHHHHHHHH
T ss_pred             --------CCCCcCHHHHHHHHHHHhCcccCC-cCCCEEEECCCccccCCCccccCCccc
Confidence                    112567899999999988655332 456899999884333333444333433

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.78  E-value=9.1e-18  Score=140.88  Aligned_cols=218  Identities=15%  Similarity=0.073  Sum_probs=140.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      .+++|+|+||||+|+||++++++|+ +.|++|++++|++.+..       ....++.++.+|+.|.++++++++      
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLA-QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3457899999999999999999999 68999999999865422       012467889999999998888776      


Q ss_pred             -ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           92 -LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 -~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                       .+|.++|.++...     ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...|...           
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  158 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF-----------  158 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-----------
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC-----------
Confidence             5677888876431     22334455568999999999999887643  1223456666554333110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                             .+..+   |+.+|...+         .. .+ +++++++|+.+.++.....  .... .....+..  .    
T Consensus       159 -------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~--~~~~-~~~~~~~~--~----  218 (260)
T 2zat_A          159 -------PNLGP---YNVSKTALLGLTKNLAVELAPRN-IRVNCLAPGLIKTNFSQVL--WMDK-ARKEYMKE--S----  218 (260)
T ss_dssp             -------TTBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSSTTHHH--HSSH-HHHHHHHH--H----
T ss_pred             -------CCchh---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEEECcccCccchhc--ccCh-HHHHHHHh--c----
Confidence                   00122   777666444         11 23 9999999999987421100  0000 00000000  0    


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                               .....+.+++|+|.++++++..+... ..|+.|++.+|...|
T Consensus       219 ---------~~~~~~~~~~dva~~v~~l~s~~~~~-~tG~~~~vdgG~~~s  259 (260)
T 2zat_A          219 ---------LRIRRLGNPEDCAGIVSFLCSEDASY-ITGETVVVGGGTASR  259 (260)
T ss_dssp             ---------HTCSSCBCGGGGHHHHHHHTSGGGTT-CCSCEEEESTTCCCC
T ss_pred             ---------CCCCCCCCHHHHHHHHHHHcCcccCC-ccCCEEEECCCcccc
Confidence                     11223667888999998887654321 345899999988765

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.78  E-value=9.2e-18  Score=139.69  Aligned_cols=212  Identities=14%  Similarity=0.148  Sum_probs=139.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|+.....        ....++.++++|++|.++++++++       
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLA-EEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999 68999999988653321        113467889999999999888877       


Q ss_pred             ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.|+...    ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.             
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  148 (246)
T 3osu_A           82 SLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN-------------  148 (246)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC-------------
Confidence            4567888876543    22244555568999999999999998543  1123345555543232111             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+..+   |+.+|...+         +. .+ +++.+++|+.+.++......   ...  ...+..  ..|    
T Consensus       149 -----~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~~---~~~--~~~~~~--~~p----  208 (246)
T 3osu_A          149 -----PGQAN---YVATKAGVIGLTKSAARELASRG-ITVNAVAPGFIVSDMTDALS---DEL--KEQMLT--QIP----  208 (246)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBGGGCCSCSC---HHH--HHHHHT--TCT----
T ss_pred             -----CCChH---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEEECCCcCCcccccC---HHH--HHHHHh--cCC----
Confidence                 01223   787776443         11 23 99999999999985432211   111  011111  222    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                               +..+.+.+|+|.++++++..+... ..|+.|++.+|..
T Consensus       209 ---------~~r~~~~~dva~~v~~l~s~~~~~-itG~~i~vdgG~~  245 (246)
T 3osu_A          209 ---------LARFGQDTDIANTVAFLASDKAKY-ITGQTIHVNGGMY  245 (246)
T ss_dssp             ---------TCSCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTSC
T ss_pred             ---------CCCCcCHHHHHHHHHHHhCccccC-CCCCEEEeCCCcc
Confidence                     122557889999999887655332 3468999988753

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.78  E-value=1.2e-17  Score=140.39  Aligned_cols=220  Identities=13%  Similarity=0.083  Sum_probs=139.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+..+..     .   ...++.++.+|+.|.++++++++.     
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            456899999999999999999999 68999999999655421     0   134688899999999998887765     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCC
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        +|.++|+++....    .....+..+.+++|+.++.++++++....   ....+++++|+...+....          
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------  160 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ----------  160 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE----------
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccc----------
Confidence              4558888765322    22344555689999999999999987641   1124566665543331110          


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                       ....+..+..+   |+.+|...+     +    . .+ ++++++||+.++++.....   ....  ......  ..|  
T Consensus       161 -~~~~~~~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~---~~~~--~~~~~~--~~~--  226 (265)
T 1h5q_A          161 -SSLNGSLTQVF---YNSSKAACSNLVKGLAAEWASAG-IRVNALSPGYVNTDQTAHM---DKKI--RDHQAS--NIP--  226 (265)
T ss_dssp             -EETTEECSCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCGGGGGS---CHHH--HHHHHH--TCT--
T ss_pred             -ccccccccccc---cHHHHHHHHHHHHHHHHHHHhcC-cEEEEEecCcccccccccc---chhH--HHHHHh--cCc--
Confidence             00011111223   877776554     1    1 24 9999999999998532211   0111  000111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 ...+.+++|+|.++++++..+... ..|+.|++.++..
T Consensus       227 -----------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~~  263 (265)
T 1h5q_A          227 -----------LNRFAQPEEMTGQAILLLSDHATY-MTGGEYFIDGGQL  263 (265)
T ss_dssp             -----------TSSCBCGGGGHHHHHHHHSGGGTT-CCSCEEEECTTGG
T ss_pred             -----------ccCCCCHHHHHHHHHhhccCchhc-CcCcEEEecCCEe
Confidence                       112567788899999888654321 3458999988753

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.78  E-value=9.3e-18  Score=139.71  Aligned_cols=212  Identities=13%  Similarity=0.072  Sum_probs=137.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+...        ...++.++.+|+.|.++++++++      
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLA-SAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            456899999999999999999999 689999999998654220        13468889999999999988887      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.|+|+++....    ..+..+..+.+++|+.++.++++++.+.  ..+..+++.+|+...+.+.            
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  151 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN------------  151 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC------------
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC------------
Confidence             56779998765332    2234455568999999998888776553  1123456665553222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +  +..+   |+.+|...+         .. .+ ++++++||+.++++..... .  ...  ......  ..|   
T Consensus       152 ----~--~~~~---Y~~sK~a~~~~~~~la~e~~~~~-i~v~~v~Pg~v~t~~~~~~-~--~~~--~~~~~~--~~~---  211 (248)
T 2pnf_A          152 ----V--GQVN---YSTTKAGLIGFTKSLAKELAPRN-VLVNAVAPGFIETDMTAVL-S--EEI--KQKYKE--QIP---  211 (248)
T ss_dssp             ----T--TCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCGGGGGS-C--HHH--HHHHHH--TCT---
T ss_pred             ----C--CCch---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEEeceecCchhhhc-c--HHH--HHHHHh--cCC---
Confidence                0  0223   777665443         11 23 9999999999998532211 0  110  001111  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                ...+.+++|+|+++++++...... ..|+.|++.++.
T Consensus       212 ----------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~  247 (248)
T 2pnf_A          212 ----------LGRFGSPEEVANVVLFLCSELASY-ITGEVIHVNGGM  247 (248)
T ss_dssp             ----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC
T ss_pred             ----------CCCccCHHHHHHHHHHHhCchhhc-CCCcEEEeCCCc
Confidence                      112668899999999888654221 335899998763

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.78  E-value=1.8e-17  Score=138.80  Aligned_cols=220  Identities=11%  Similarity=0.020  Sum_probs=141.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh------
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      .+++|++|||||+|+||++++++|+ +.|++|++++|++....     .  ...++.++.+|++|.++++++++      
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFA-KEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4567899999999999999999999 68999999999875432     1  12468889999999999888776      


Q ss_pred             -ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCC
Q 042242           92 -LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 -~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                       .+|.++|.|+...    ...+..+....+++|+.++.++++++...   .....+++.+++...+...           
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  150 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG-----------  150 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC-----------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC-----------
Confidence             4566888876432    22344555568999999999999988543   1123345555443222110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                           +  ....   |+.+|...+         +.  .+ +++..++|+.+.++.............  ..+..  .   
T Consensus       151 -----~--~~~~---Y~asKaa~~~l~~~la~e~~~~~g-Irvn~v~PG~v~t~~~~~~~~~~~~~~--~~~~~--~---  212 (257)
T 3imf_A          151 -----P--GVIH---SAAAKAGVLAMTKTLAVEWGRKYG-IRVNAIAPGPIERTGGADKLWISEEMA--KRTIQ--S---  212 (257)
T ss_dssp             -----T--TCHH---HHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEECCBSSCCCC-------CCS--HHHHT--T---
T ss_pred             -----C--CcHH---HHHHHHHHHHHHHHHHHHhccccC-eEEEEEEECCCcCCcchhhcccCHHHH--HHHHh--c---
Confidence                 0  0122   776665433         22  25 999999999998853221100000000  00000  1   


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccH
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTW  285 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~  285 (303)
                                ..+..+.+++|+|.++++++...... ..|+.+++.+|..++.
T Consensus       213 ----------~p~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~~~~~  254 (257)
T 3imf_A          213 ----------VPLGRLGTPEEIAGLAYYLCSDEAAY-INGTCMTMDGGQHLHQ  254 (257)
T ss_dssp             ----------STTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTTSCC
T ss_pred             ----------CCCCCCcCHHHHHHHHHHHcCchhcC-ccCCEEEECCCcccCC
Confidence                      11223668899999999988655322 3468999999876654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.78  E-value=1.3e-17  Score=139.95  Aligned_cols=208  Identities=12%  Similarity=0.084  Sum_probs=137.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..    ....++.++.+|++|.++++++++       .+|
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD   83 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   83 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            456899999999999999999999 68999999999865432    112347889999999999988887       577


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.++....    ..+..+..+.+++|+.++.++++++.+.  ..+..+++.+++...|.+.                
T Consensus        84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------  147 (260)
T 1nff_A           84 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT----------------  147 (260)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------------
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC----------------
Confidence            78898765322    2234455568999999997777766543  1123455555543333110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                      +  +..+   |+.+|...+         .. .+ ++++++||+.++++...    . ..           . .+.  .  
T Consensus       148 ~--~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~----~-~~-----------~-~~~--~--  200 (260)
T 1nff_A          148 V--ACHG---YTATKFAVRGLTKSTALELGPSG-IRVNSIHPGLVKTPMTD----W-VP-----------E-DIF--Q--  200 (260)
T ss_dssp             T--TBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCSGGGT----T-SC-----------T-TCS--C--
T ss_pred             C--Cchh---HHHHHHHHHHHHHHHHHHhCccC-cEEEEEEeCCCCCCccc----c-ch-----------h-hHH--h--
Confidence            0  0122   777666554         11 24 99999999999985321    0 00           0 000  0  


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                          ..+..+.+++|+|.++++++..+... ..|+.|++.++..
T Consensus       201 ----~~~~~~~~~~dvA~~v~~l~s~~~~~-~~G~~~~v~gG~~  239 (260)
T 1nff_A          201 ----TALGRAAEPVEVSNLVVYLASDESSY-STGAEFVVDGGTV  239 (260)
T ss_dssp             ----CSSSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             ----CccCCCCCHHHHHHHHHHHhCccccC-CcCCEEEECCCee
Confidence                11123568899999999988654322 3458999988863

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.78  E-value=2.7e-18  Score=143.75  Aligned_cols=214  Identities=14%  Similarity=0.087  Sum_probs=138.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC-Ccccc-------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK-PEITA-------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~-~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+ +.+..       ....++.++.+|++|.++++++++      
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFA-RAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999999 689999999998 54321       013468889999999999988887      


Q ss_pred             -ccCceeEEeec-cc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC--c---cEEEEeecccccccccCCCcc
Q 042242           92 -LLEDVTHIFWV-TW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KA--L---KHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        92 -~~~~V~~~~~~-~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~--~---~~~~~~s~~~~y~~~~~~~g~  158 (303)
                       .+|.|+|+++. ..    .........+.+++|+.++.++++++....  ..  .   .+++.+++...+...      
T Consensus        84 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------  157 (258)
T 3afn_B           84 GGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGG------  157 (258)
T ss_dssp             SSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCC------
T ss_pred             CCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCC------
Confidence             67779999764 21    122334455688999999999998876541  01  1   455555543232100      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  228 (303)
                                 ..+..+   |+.+|...+         .. .+ ++++++||+.++++.....   ....  ...+..  
T Consensus       158 -----------~~~~~~---Y~~sK~a~~~~~~~~~~e~~~~g-i~v~~v~Pg~v~t~~~~~~---~~~~--~~~~~~--  215 (258)
T 3afn_B          158 -----------GPGAGL---YGAAKAFLHNVHKNWVDFHTKDG-VRFNIVSPGTVDTAFHADK---TQDV--RDRISN--  215 (258)
T ss_dssp             -----------CTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBSSGGGTTC---CHHH--HHHHHT--
T ss_pred             -----------CCCchH---HHHHHHHHHHHHHHHHHhhcccC-eEEEEEeCCCccccccccc---CHHH--HHHHhc--
Confidence                       001223   777776554         11 14 9999999999998532211   0111  011111  


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      +.|             +..+.+++|+|+++++++..+......|+.|++.++.
T Consensus       216 ~~~-------------~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~  255 (258)
T 3afn_B          216 GIP-------------MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ  255 (258)
T ss_dssp             TCT-------------TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred             cCC-------------CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence            111             1236688889999998886542201235899998875

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.77  E-value=1.7e-17  Score=140.79  Aligned_cols=224  Identities=16%  Similarity=0.101  Sum_probs=137.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------c---cCCCeEEEEecCCCHHHHHHHHh----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------I---QSSSYCFISCDLLNPLDIKRKLT----   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~---~~~~~~~~~~D~~~~~~l~~~~~----   91 (303)
                      ++++|++|||||+|+||++++++|+ +.|++|++++|+.....      .   ...++.++.+|++|.++++++++    
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLA-KAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999 68999999999543211      1   13468889999999999888876    


Q ss_pred             ---ccCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           92 ---LLEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 ---~~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                         .+|.++|.|+.....    .+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.          
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  170 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS----------  170 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCC----------
Confidence               456688887754322    244555568999999999999987543  1122345555543232110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhh-hCCCc
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCK-HLNLP  231 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~  231 (303)
                              ....+   |+.+|...+         +. .+ +++.+++|+.+.++.......   .......... .....
T Consensus       171 --------~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~t~~~~~~~~---~~~~~~~~~~~~~~~~  235 (281)
T 3v2h_A          171 --------PFKSA---YVAAKHGIMGLTKTVALEVAESG-VTVNSICPGYVLTPLVEKQIP---DQARTRGITEEQVINE  235 (281)
T ss_dssp             --------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCC---------------------------
T ss_pred             --------CCchH---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEECCCCcCcchhhhcc---hhhhhcCCCHHHHHHH
Confidence                    00223   777776544         22 23 999999999999853221110   0000000000 00000


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ....+      .....+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       236 ~~~~~------~p~~r~~~~edvA~~v~~L~s~~a~~-itG~~i~vdGG~  278 (281)
T 3v2h_A          236 VMLKG------QPTKKFITVEQVASLALYLAGDDAAQ-ITGTHVSMDGGW  278 (281)
T ss_dssp             ----C------CTTCSCBCHHHHHHHHHHHHSSGGGG-CCSCEEEESTTG
T ss_pred             HHHhc------CCCCCccCHHHHHHHHHHHcCCCcCC-CCCcEEEECCCc
Confidence            01111      23345788999999999988665432 346899998874

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.77  E-value=3.5e-17  Score=137.10  Aligned_cols=213  Identities=13%  Similarity=0.122  Sum_probs=137.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cCCCeEEEEecCCCHHHHHHHHh-------ccCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QSSSYCFISCDLLNPLDIKRKLT-------LLED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~l~~~~~-------~~~~   95 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|++.....    ...++.++.+|++|.++++++++       .+|.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLA-QEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999 689999999998765331    12367889999999999888876       5667


Q ss_pred             eeEEeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhcc-C-------CccEEEEeecccccccccCCCccc
Q 042242           96 VTHIFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRA-K-------ALKHVSLQTGMKHYVSLQGLPEEK  159 (303)
Q Consensus        96 V~~~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-------~~~~~~~~s~~~~y~~~~~~~g~~  159 (303)
                      ++|.|+....        ..+..+..+.+++|+.++..+++++.... .       +..+++.+++...+.+.       
T Consensus        85 lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~-------  157 (257)
T 3tpc_A           85 LVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ-------  157 (257)
T ss_dssp             EEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC-------
T ss_pred             EEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC-------
Confidence            8888765422        22345555689999999999999988651 1       23456665554333111       


Q ss_pred             ccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCC
Q 042242          160 QVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLN  229 (303)
Q Consensus       160 ~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  229 (303)
                                 .+..+   |+.+|...+         +. .+ +++.+++|+.|.++.....   ....  ...+..  .
T Consensus       158 -----------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~---~~~~--~~~~~~--~  215 (257)
T 3tpc_A          158 -----------IGQAA---YAASKGGVAALTLPAARELARFG-IRVVTIAPGIFDTPMMAGM---PQDV--QDALAA--S  215 (257)
T ss_dssp             -----------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBSCC-------------------C--C
T ss_pred             -----------CCCcc---hHHHHHHHHHHHHHHHHHHHHcC-eEEEEEEeCCCCChhhccC---CHHH--HHHHHh--c
Confidence                       00223   777775444         12 23 9999999999988432111   0000  000000  1


Q ss_pred             CceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          230 LPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       230 ~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      .|+  +          ..+.+++|+|.++++++.....   .|+.+++.+|..++
T Consensus       216 ~p~--~----------~r~~~~~dva~~v~~l~s~~~i---tG~~i~vdGG~~~~  255 (257)
T 3tpc_A          216 VPF--P----------PRLGRAEEYAALVKHICENTML---NGEVIRLDGALRMA  255 (257)
T ss_dssp             SSS--S----------CSCBCHHHHHHHHHHHHHCTTC---CSCEEEESTTCCC-
T ss_pred             CCC--C----------CCCCCHHHHHHHHHHHcccCCc---CCcEEEECCCccCC
Confidence            110  0          1266889999999998876443   35999999887654

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.77  E-value=4e-17  Score=136.18  Aligned_cols=219  Identities=12%  Similarity=0.035  Sum_probs=131.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~   98 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++...   ..++.++.+|++|.+++.++++       .+|.++|
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFV-EAGAKVTGFDQAFTQE---QYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCCCSS---CCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCchhhh---cCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            346899999999999999999999 6899999999986531   2247889999999999988886       4677888


Q ss_pred             Eeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           99 IFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        99 ~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      .++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...                  .+
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~~  142 (250)
T 2fwm_X           81 AAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPR------------------IG  142 (250)
T ss_dssp             CCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------------TT
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC------------------CC
Confidence            8765322    2234555568999999999999988543  1123455555543232100                  00


Q ss_pred             CCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHH-HHhhhCCCceeeCCchhhh
Q 042242          173 KSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYG-AVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~  241 (303)
                      ...   |+.+|...+         .. .+ ++++++||+.++++....... ....  .. .+.. .... ....     
T Consensus       143 ~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~-~~~~--~~~~~~~-~~~~-~~~~-----  208 (250)
T 2fwm_X          143 MSA---YGASKAALKSLALSVGLELAGSG-VRCNVVSPGSTDTDMQRTLWV-SDDA--EEQRIRG-FGEQ-FKLG-----  208 (250)
T ss_dssp             CHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCC---------------------------------------
T ss_pred             Cch---HHHHHHHHHHHHHHHHHHhCccC-CEEEEEECCcccCcccccccc-ChhH--HHHHHhh-hhhc-cccc-----
Confidence            222   777766554         11 24 999999999999853221100 0000  00 0000 0000 0000     


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       .....+.+++|+|.++++++..+... ..|+.+++.++..
T Consensus       209 -~p~~~~~~p~dvA~~v~~l~s~~~~~-~tG~~i~vdGG~~  247 (250)
T 2fwm_X          209 -IPLGKIARPQEIANTILFLASDLASH-ITLQDIVVDGGST  247 (250)
T ss_dssp             --------CHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             -CCCCCCcCHHHHHHHHHHHhCccccC-CCCCEEEECCCcc
Confidence             11123568899999999988664321 3468999988754

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.77  E-value=1.9e-17  Score=138.47  Aligned_cols=222  Identities=13%  Similarity=0.052  Sum_probs=143.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      ..+|+++||||+|+||++++++|+ +.|++|++++|++....    ....++.++.+|++|.++++++++       .+|
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLV-EGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            356899999999999999999999 68999999999875532    112468899999999998887765       345


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .++|.++....    ..+..+..+.+++|+.++..+++++.....+-.+++.+++...+...                  
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------  146 (255)
T 4eso_A           85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH------------------  146 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC------------------
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------------
Confidence            57787665332    22455556689999999999999988752222345555543222110                  


Q ss_pred             CCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCc-cchhhHHHHHHH-HhhhCCCceeeCCch
Q 042242          171 VSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSL-YNFLGCLCVYGA-VCKHLNLPFVFGGTR  238 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~g~~  238 (303)
                      .+..+   |+.+|...+         +. .+ +++..++|+.+.++..... ... .....+.. ...  ..|       
T Consensus       147 ~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~--~~p-------  212 (255)
T 4eso_A          147 PGMSV---YSASKAALVSFASVLAAELLPRG-IRVNSVSPGFIDTPTKGVAGITE-AERAEFKTLGDN--ITP-------  212 (255)
T ss_dssp             TTBHH---HHHHHHHHHHHHHHHHHHTGGGT-CEEEEEEECSBCCSSTTCTTSCH-HHHHHHHHHHHH--HST-------
T ss_pred             CCchH---HHHHHHHHHHHHHHHHHHHhhhC-cEEEEEecCcccCcccccccCCh-hhHHHHHHHHhc--cCC-------
Confidence            00222   777776544         11 23 9999999999998532211 110 01111111 111  111       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhh
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEI  288 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~  288 (303)
                            ...+.+++|+|.++++++.....  ..|+.+++.+|...++.++
T Consensus       213 ------~~r~~~pedvA~~v~~L~s~~~~--itG~~i~vdGG~~~~l~~~  254 (255)
T 4eso_A          213 ------MKRNGTADEVARAVLFLAFEATF--TTGAKLAVDGGLGQKLSTA  254 (255)
T ss_dssp             ------TSSCBCHHHHHHHHHHHHHTCTT--CCSCEEEESTTTTTTBCC-
T ss_pred             ------CCCCcCHHHHHHHHHHHcCcCcC--ccCCEEEECCCccccCcCc
Confidence                  12256889999999988765222  4569999999988776554

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.77  E-value=2.2e-17  Score=138.64  Aligned_cols=220  Identities=14%  Similarity=0.070  Sum_probs=139.6

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCccc---c---ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEIT---A---IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~---~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+  |+||++++++|+ +.|++|++++|++...   .   .....+.++.+|++|.++++++++      
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF   84 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHH-HHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356899999999  999999999999 5799999999986411   1   112347889999999999888876      


Q ss_pred             -ccCceeEEeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           92 -LLEDVTHIFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 -~~~~V~~~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                       .+|.++|.|+....        ..+..+..+.+++|+.++.++++++.....+-.+++.+|+...+...          
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------  154 (261)
T 2wyu_A           85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV----------  154 (261)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC----------
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC----------
Confidence             45668888765321        23445556689999999999999998752111345554442222100          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              .+..+   |+.+|...+         +. .+ +++++++|+.++++........ ...  ...+.+  ..| 
T Consensus       155 --------~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~-~~~--~~~~~~--~~p-  216 (261)
T 2wyu_A          155 --------PKYNV---MAIAKAALEASVRYLAYELGPKG-VRVNAISAGPVRTVAARSIPGF-TKM--YDRVAQ--TAP-  216 (261)
T ss_dssp             --------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCCCCTGGGGCTTH-HHH--HHHHHH--HST-
T ss_pred             --------CCchH---HHHHHHHHHHHHHHHHHHHhhhC-cEEEEEeeCCCcCchhhhcccc-HHH--HHHHHh--cCC-
Confidence                    00122   777666544         11 24 9999999999998532111000 110  011111  111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHh
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                                  +..+.+++|+|.++++++...... ..|+.|++.++..++..|
T Consensus       217 ------------~~~~~~~~dva~~v~~l~s~~~~~-~tG~~~~vdgG~~~~~~~  258 (261)
T 2wyu_A          217 ------------LRRNITQEEVGNLGLFLLSPLASG-ITGEVVYVDAGYHIMGME  258 (261)
T ss_dssp             ------------TSSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGBC--
T ss_pred             ------------CCCCCCHHHHHHHHHHHcChhhcC-CCCCEEEECCCccccCCC
Confidence                        112567899999999988654321 345899999987655443

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.77  E-value=1.6e-17  Score=142.52  Aligned_cols=218  Identities=12%  Similarity=0.074  Sum_probs=137.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-------cCCCeEEEEecCCCHHHHHHHHhc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-------QSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-------~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      .+++|+|+||||+|+||++++++|+ +.|++|++++|+.....     .       ...++.++.+|++|.++++++++.
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            4457899999999999999999999 68999999999865421     0       134688999999999999888875


Q ss_pred             -------cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCccc
Q 042242           93 -------LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEK  159 (303)
Q Consensus        93 -------~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~  159 (303)
                             +|.|+|+|+...    ......+..+.+++|+.++.++++++...  .....+++.+++...++.        
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------  165 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF--------  165 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCC--------
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecccCC--------
Confidence                   677999877432    22234445568999999999999997762  111234444443221100        


Q ss_pred             ccCCcCcCCCCCCCCccchHHHHHHHHH--------Hh--cCCcceEEecCCceeecCCCCccc-hhhHHHHHHHHhhhC
Q 042242          160 QVRFYDEECPRVSKSNNFYYVLEDLLKE--------KL--AGKVAWSVHRPGLLLGSSHRSLYN-FLGCLCVYGAVCKHL  228 (303)
Q Consensus       160 ~~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~--~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~  228 (303)
                               +  ....   |+.+|...+        ..  .+ ++++++||+.++|+....... .....      ..  
T Consensus       166 ---------~--~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~~~------~~--  222 (303)
T 1yxm_A          166 ---------P--LAVH---SGAARAGVYNLTKSLALEWACSG-IRINCVAPGVIYSQTAVENYGSWGQSF------FE--  222 (303)
T ss_dssp             ---------T--TCHH---HHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEECSBCCTGGGTTSGGGGGGG------GT--
T ss_pred             ---------C--cchh---hHHHHHHHHHHHHHHHHHhcccC-eEEEEEecCCcccchhhhhccccchHH------HH--
Confidence                     0  0112   555444332        22  24 999999999999952111100 00000      00  


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      .   ....      .....+.+++|+|.++++++...... ..|+.|++.++...+
T Consensus       223 ~---~~~~------~p~~~~~~~~dvA~~i~~l~~~~~~~-~~G~~~~v~gG~~~~  268 (303)
T 1yxm_A          223 G---SFQK------IPAKRIGVPEEVSSVVCFLLSPAASF-ITGQSVDVDGGRSLY  268 (303)
T ss_dssp             T---GGGG------STTSSCBCTHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGC
T ss_pred             H---HHhc------CcccCCCCHHHHHHHHHHHhCccccc-CCCcEEEECCCeecc
Confidence            0   0000      11123668899999999988654321 346899999886544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.77  E-value=1.7e-17  Score=138.19  Aligned_cols=214  Identities=12%  Similarity=0.095  Sum_probs=141.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|++|.++++++++.      
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALA-SKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999 68999999999875432       1134788999999999998888765      


Q ss_pred             -cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       +|.++|.++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.             
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  148 (247)
T 3lyl_A           82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN-------------  148 (247)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-------------
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC-------------
Confidence             4668888765432    2244555668999999999999987654  1222355555543332111             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+..+   |+.+|...+         +. .+ +++.+++|+.+.++......   ...  ......  ..|    
T Consensus       149 -----~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~---~~~--~~~~~~--~~~----  208 (247)
T 3lyl_A          149 -----PGQTN---YCAAKAGVIGFSKSLAYEVASRN-ITVNVVAPGFIATDMTDKLT---DEQ--KSFIAT--KIP----  208 (247)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCTTTTTSC---HHH--HHHHHT--TST----
T ss_pred             -----CCcHH---HHHHHHHHHHHHHHHHHHHHHcC-eEEEEEeeCcEecccchhcc---HHH--HHHHhh--cCC----
Confidence                 00223   777776433         11 23 99999999999885332110   110  000111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                               ...+.+++|+|.++++++...... ..|+.|++.+|..+
T Consensus       209 ---------~~~~~~~~dva~~i~~l~s~~~~~-~tG~~i~vdgG~~~  246 (247)
T 3lyl_A          209 ---------SGQIGEPKDIAAAVAFLASEEAKY-ITGQTLHVNGGMYM  246 (247)
T ss_dssp             ---------TCCCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSSC
T ss_pred             ---------CCCCcCHHHHHHHHHHHhCCCcCC-ccCCEEEECCCEec
Confidence                     123668899999999988654332 34699999988654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.77  E-value=2.1e-17  Score=138.38  Aligned_cols=218  Identities=13%  Similarity=0.065  Sum_probs=142.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      .+++|+++||||+|+||++++++|+ +.|++|++++|+.....       ....++.++.+|++|.++++++++      
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFA-KAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHH-HHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3457899999999999999999999 68999999999865432       113578889999999998888776      


Q ss_pred             -ccCceeEEeecccc---cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 -LLEDVTHIFWVTWA---SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 -~~~~V~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       .+|.++|.|+....   ..+..+....+++|+.++.++++++...  ..+..+++.+++...+...             
T Consensus        88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  154 (256)
T 3gaf_A           88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTN-------------  154 (256)
T ss_dssp             SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCC-------------
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCC-------------
Confidence             45678888765432   2344555668999999999999998654  1223355555543232110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+..+   |+.+|...+         +. .+ +++..++|+.+.++.....   .... ....+..  ..|    
T Consensus       155 -----~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~---~~~~-~~~~~~~--~~p----  215 (256)
T 3gaf_A          155 -----VRMAS---YGSSKAAVNHLTRNIAFDVGPMG-IRVNAIAPGAIKTDALATV---LTPE-IERAMLK--HTP----  215 (256)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCCHHHHHH---CCHH-HHHHHHT--TCT----
T ss_pred             -----CCchH---HHHHHHHHHHHHHHHHHHHhhhC-cEEEEEEEccccCchhhhc---cCHH-HHHHHHh--cCC----
Confidence                 00223   777766554         11 23 9999999999987421100   0000 0001111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccH
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTW  285 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~  285 (303)
                               +..+.+++|+|.++++++...... ..|+.+++.+|...++
T Consensus       216 ---------~~r~~~~~dva~~~~~L~s~~~~~-itG~~i~vdgG~~~~~  255 (256)
T 3gaf_A          216 ---------LGRLGEAQDIANAALFLCSPAAAW-ISGQVLTVSGGGVQEL  255 (256)
T ss_dssp             ---------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSCCC-
T ss_pred             ---------CCCCCCHHHHHHHHHHHcCCcccC-ccCCEEEECCCccccC
Confidence                     123668899999999988654322 4469999999987664

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.77  E-value=1.1e-17  Score=139.44  Aligned_cols=215  Identities=14%  Similarity=0.087  Sum_probs=138.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++....     . ...+++++.+|++|.+++.++++.       
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            456899999999999999999999 68999999999865422     1 114788999999999998888775       


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCc-cEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KAL-KHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~-~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.|+|+++....    .....+..+.+++|+.++..+.+.+....  .+. .+++++++...|.+.             
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-------------  149 (251)
T 1zk4_A           83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD-------------  149 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC-------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC-------------
Confidence            6778888765322    22344455689999998888777765441  122 466666654333111             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----Hh---c--CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----KL---A--GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~~---~--~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                           .+..+   |+.+|...+     +.   .  .. ++++++||+.++++.....    ... ..   ......    
T Consensus       150 -----~~~~~---Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~----~~~-~~---~~~~~~----  209 (251)
T 1zk4_A          150 -----PSLGA---YNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL----PGA-EE---AMSQRT----  209 (251)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS----TTH-HH---HHTSTT----
T ss_pred             -----CCCcc---chHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhc----Cch-hh---hHHHhh----
Confidence                 00223   777666544     11   1  33 9999999999998422111    000 00   000000    


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       .      ..+..+.+++|+|.++++++..+... ..|+.|++.++..
T Consensus       210 -~------~~~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~~  249 (251)
T 1zk4_A          210 -K------TPMGHIGEPNDIAYICVYLASNESKF-ATGSEFVVDGGYT  249 (251)
T ss_dssp             -T------CTTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             -c------CCCCCCcCHHHHHHHHHHHcCccccc-ccCcEEEECCCcc
Confidence             0      11123678899999999988654321 3358999988753

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.77  E-value=1.7e-17  Score=139.47  Aligned_cols=217  Identities=10%  Similarity=0.071  Sum_probs=138.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|+.....        ....++.++++|++|.+++.++++       
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLL-AKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEeCCCchhHHHHHHHHH-HCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999 68999999988765421        012468899999999999888876       


Q ss_pred             ccCceeEEeec------ccccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           92 LLEDVTHIFWV------TWASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 ~~~~V~~~~~~------~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                      .+|.++|.|+.      .....+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...           
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~-----------  153 (264)
T 3i4f_A           85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP-----------  153 (264)
T ss_dssp             CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC-----------
T ss_pred             CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC-----------
Confidence            45668888772      1222344555568999999999999998543  1122344444432111000           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                           +..+..+   |+.+|...+         +. .+ +++.+++|+.++++.....   ....   ...        .
T Consensus       154 -----~~~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~---~~~~---~~~--------~  210 (264)
T 3i4f_A          154 -----GWIYRSA---FAAAKVGLVSLTKTVAYEEAEYG-ITANMVCPGDIIGEMKEAT---IQEA---RQL--------K  210 (264)
T ss_dssp             -----CCTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCCCGGGGSCC---HHHH---HHC---------
T ss_pred             -----CCCCCch---hHHHHHHHHHHHHHHHHHhhhcC-cEEEEEccCCccCccchhc---cHHH---HHH--------H
Confidence                 0011223   777766544         11 23 9999999999998532211   0110   000        0


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccH
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTW  285 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~  285 (303)
                      ...      ..+..+.+++|+|+++++++...... ..|+.+++.+|....+
T Consensus       211 ~~~------~p~~r~~~~~dva~~v~~l~s~~~~~-itG~~i~vdGG~~~~~  255 (264)
T 3i4f_A          211 EHN------TPIGRSGTGEDIARTISFLCEDDSDM-ITGTIIEVTGAVDVIH  255 (264)
T ss_dssp             -------------CCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESCSCCCCC
T ss_pred             hhc------CCCCCCcCHHHHHHHHHHHcCcccCC-CCCcEEEEcCceeecc
Confidence            000      11223668899999999988765332 3469999998875443

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.77  E-value=8.7e-18  Score=140.41  Aligned_cols=219  Identities=12%  Similarity=0.079  Sum_probs=118.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+||||||+|+||++++++|+ +.|++|++++|+.....       ....++.++.+|++|.++++++++       
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALA-REGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999 68999999999865432       113467889999999999888876       


Q ss_pred             ccCceeEEeecc---c----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           92 LLEDVTHIFWVT---W----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 ~~~~V~~~~~~~---~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                      .+|.++|.++..   .    ...+.....+.+++|+.++..+++++...  ..+..+++.+++...|...          
T Consensus        86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  155 (253)
T 3qiv_A           86 GIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYS----------  155 (253)
T ss_dssp             CCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred             CCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccCCC----------
Confidence            566788887652   1    12344555568999999987777776543  1122345555543333100          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHHH---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKEK---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                               +.+..++.+.+.+...+   .... +++.+++|+.++++......   .. .....+         ..+  
T Consensus       156 ---------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~-~~~~~~---------~~~--  211 (253)
T 3qiv_A          156 ---------NYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTT---PK-EMVDDI---------VKG--  211 (253)
T ss_dssp             -------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------------------------------------
T ss_pred             ---------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcC---cH-HHHHHH---------hcc--
Confidence                     01111222322222222   1222 99999999999985322110   00 000000         011  


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                          ..+..+.+++|+|.++++++...... ..|+.|++.+|..++
T Consensus       212 ----~~~~~~~~~~dva~~~~~l~s~~~~~-~tG~~~~vdgG~~~~  252 (253)
T 3qiv_A          212 ----LPLSRMGTPDDLVGMCLFLLSDEASW-ITGQIFNVDGGQIIR  252 (253)
T ss_dssp             ------------CCHHHHHHHHHHSGGGTT-CCSCEEEC-------
T ss_pred             ----CCCCCCCCHHHHHHHHHHHcCccccC-CCCCEEEECCCeecC
Confidence                11122446788899998888654321 346999999987654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.77  E-value=1.5e-17  Score=139.52  Aligned_cols=210  Identities=13%  Similarity=0.049  Sum_probs=136.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|+..+..  ....++.++.+|++|.+++.++++.       +|.++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLL-EHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHH-HTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            46899999999999999999999 68999999999876532  1223588999999999998887763       56688


Q ss_pred             EEeeccccc---CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           98 HIFWVTWAS---QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        98 ~~~~~~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      |.|+.....   ....+....+++|+.++.++++++...  ..+..+++.+++...+.+.                  .+
T Consensus       105 ~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~~  166 (260)
T 3gem_A          105 HNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGS------------------SK  166 (260)
T ss_dssp             ECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCC------------------SS
T ss_pred             ECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC------------------CC
Confidence            887654322   223344468999999999999988764  2223455555543332110                  00


Q ss_pred             CCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          173 KSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      ...   |+.+|...+         +..+ +++.+++|+.+..+.....     ..  ......  ..|            
T Consensus       167 ~~~---Y~asKaa~~~l~~~la~e~~~~-Irvn~v~PG~v~t~~~~~~-----~~--~~~~~~--~~p------------  221 (260)
T 3gem_A          167 HIA---YCATKAGLESLTLSFAARFAPL-VKVNGIAPALLMFQPKDDA-----AY--RANALA--KSA------------  221 (260)
T ss_dssp             CHH---HHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECTTCC------------------------CC------------
T ss_pred             cHh---HHHHHHHHHHHHHHHHHHHCCC-CEEEEEeecccccCCCCCH-----HH--HHHHHh--cCC------------
Confidence            223   787776544         2234 9999999999987421110     00  000000  111            


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                       +..+.+++|+|.++++++......   |+.+++.+|..++
T Consensus       222 -~~r~~~~edva~~v~~L~~~~~it---G~~i~vdGG~~~~  258 (260)
T 3gem_A          222 -LGIEPGAEVIYQSLRYLLDSTYVT---GTTLTVNGGRHVK  258 (260)
T ss_dssp             -SCCCCCTHHHHHHHHHHHHCSSCC---SCEEEESTTTTTC
T ss_pred             -CCCCCCHHHHHHHHHHHhhCCCCC---CCEEEECCCcccC
Confidence             112457889999999998554443   5999999987654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.77  E-value=1.5e-17  Score=139.96  Aligned_cols=214  Identities=12%  Similarity=0.039  Sum_probs=129.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..       ....++.++.+|+.|.++++++++       
T Consensus        12 l~~k~vlITGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   90 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG   90 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            356899999999999999999999 68999999999865422       012468889999999998888774       


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.|+|+++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...|...            
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------  158 (266)
T 1xq1_A           91 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA------------  158 (266)
T ss_dssp             TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC------------
Confidence             45678998765322    2234455568999999999999988543  1123455555543232110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+..+   |+.+|...+         +. .+ ++++++||+.++++.......  ...  ...+         .
T Consensus       159 ------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~--~~~--~~~~---------~  215 (266)
T 1xq1_A          159 ------SVGSI---YSATKGALNQLARNLACEWASDG-IRANAVAPAVIATPLAEAVYD--DEF--KKVV---------I  215 (266)
T ss_dssp             --------CCH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEECCSCC------------------------------
T ss_pred             ------CCCch---HHHHHHHHHHHHHHHHHHHhHhC-cEEEEEeeCCCccchhhhhcC--HHH--HHHH---------H
Confidence                  01223   777766554         11 24 999999999999953221100  000  0000         0


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ..      ..+..+.+++|+|+++++++..+... ..|+.|++.++..
T Consensus       216 ~~------~~~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~~  256 (266)
T 1xq1_A          216 SR------KPLGRFGEPEEVSSLVAFLCMPAASY-ITGQTICVDGGLT  256 (266)
T ss_dssp             --------------CCGGGGHHHHHHHTSGGGTT-CCSCEEECCCCEE
T ss_pred             hc------CCCCCCcCHHHHHHHHHHHcCccccC-ccCcEEEEcCCcc
Confidence            00      11112567888999998887654221 3458999998854

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.77  E-value=5.3e-17  Score=136.45  Aligned_cols=216  Identities=12%  Similarity=0.017  Sum_probs=139.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +++|+||||||+|+||++++++|+ +.|++|++++|++.+..    ....++.++.+|++|.++++++++       .+|
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD   88 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALD-KAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFD   88 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            346899999999999999999999 68999999999865432    112267889999999999888887       567


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KA-LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      .++|.++....    ..+..+..+.+++|+.++.++++++....  .. ..+++.+++...+.+.               
T Consensus        89 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------  153 (263)
T 3ak4_A           89 LLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA---------------  153 (263)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---------------
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC---------------
Confidence            78998765321    22344555689999999999999887641  11 3455555543222100               


Q ss_pred             CCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhh----H-----HHHHHHHhhhC
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLG----C-----LCVYGAVCKHL  228 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~----~-----~~~~~~~~~~~  228 (303)
                       +  +..+   |+.+|...+         +. .+ ++++++||+.++++....   ...    .     -.....+..  
T Consensus       154 -~--~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~--  221 (263)
T 3ak4_A          154 -P--LLAH---YSASKFAVFGWTQALAREMAPKN-IRVNCVCPGFVKTAMQER---EIIWEAELRGMTPEAVRAEYVS--  221 (263)
T ss_dssp             -T--TCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBTTHHHHH---HHHHHHHHHTSCHHHHHHHHHH--
T ss_pred             -C--Cchh---HHHHHHHHHHHHHHHHHHHhHcC-eEEEEEecccccChhhhh---hccccccccccCcHHHHHHHHh--
Confidence             0  0223   777766443         11 24 999999999998742110   000    0     000000100  


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      ..             ....+.+++|+|.++++++..+... ..|+.|++.++..+
T Consensus       222 ~~-------------p~~~~~~~~dvA~~v~~l~s~~~~~-~tG~~~~vdgG~~~  262 (263)
T 3ak4_A          222 LT-------------PLGRIEEPEDVADVVVFLASDAARF-MTGQGINVTGGVRM  262 (263)
T ss_dssp             TC-------------TTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESSSSSC
T ss_pred             cC-------------CCCCCcCHHHHHHHHHHHhCccccC-CCCCEEEECcCEeC
Confidence            11             1223678999999999988654321 34589999988543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.77  E-value=8.6e-17  Score=136.47  Aligned_cols=222  Identities=12%  Similarity=0.039  Sum_probs=141.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc------------c-------ccCCCeEEEEecCCCHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT------------A-------IQSSSYCFISCDLLNPLDI   86 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~------------~-------~~~~~~~~~~~D~~~~~~l   86 (303)
                      +.+|++|||||+|+||++++++|+ +.|++|++++|++...            .       ....++.++++|++|.+++
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALA-EAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            356899999999999999999999 6899999999974320            0       1134688899999999998


Q ss_pred             HHHHh-------ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeeccccccccc
Q 042242           87 KRKLT-------LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQ  153 (303)
Q Consensus        87 ~~~~~-------~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~  153 (303)
                      +++++       .+|.++|.|+...    ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+... 
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-  165 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSAN-  165 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCC-
Confidence            88776       4667888876543    22344555668999999999999987553  1122355555543332111 


Q ss_pred             CCCcccccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccc---hhhH---
Q 042242          154 GLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYN---FLGC---  217 (303)
Q Consensus       154 ~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~---~~~~---  217 (303)
                                       .+..+   |+.+|...+     +.     .+ +++.+++|+.|+++.......   +...   
T Consensus       166 -----------------~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~  224 (281)
T 3s55_A          166 -----------------FAQAS---YVSSKWGVIGLTKCAAHDLVGYG-ITVNAVAPGNIETPMTHNDFVFGTMRPDLEK  224 (281)
T ss_dssp             -----------------TTCHH---HHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEECSBCSTTTSSHHHHHC-------
T ss_pred             -----------------CCCch---hHHHHHHHHHHHHHHHHHHhhcC-cEEEEEecCcccCccccchhhhccccccccc
Confidence                             00223   777776544     11     23 999999999999854321100   0000   


Q ss_pred             --HHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          218 --LCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                        ............             .....+.+++|+|.++++++...... ..|+.+++.+|...+
T Consensus       225 ~~~~~~~~~~~~~~-------------~~~~~~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdgG~~~~  279 (281)
T 3s55_A          225 PTLKDVESVFASLH-------------LQYAPFLKPEEVTRAVLFLVDEASSH-ITGTVLPIDAGATAR  279 (281)
T ss_dssp             CCHHHHHHHHHHHC-------------SSSCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGG
T ss_pred             cchhHHHHHHHhhh-------------ccCcCCCCHHHHHHHHHHHcCCcccC-CCCCEEEECCCcccC
Confidence              000000000000             11134678999999999988765432 346899999987654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.77  E-value=7.9e-18  Score=142.24  Aligned_cols=217  Identities=12%  Similarity=0.004  Sum_probs=137.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC-Ccccc-----c--cCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK-PEITA-----I--QSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~-~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+ +....     .  ...++.++.+|++|.+++.++++      
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   97 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   97 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            456899999999999999999999 689999999994 32211     0  13467889999999999888887      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccccc-ccccCCCcccccCCcC
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHY-VSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y-~~~~~~~g~~~~~~~~  165 (303)
                       .+|.|+|+++....    ..+..+..+.+++|+.++.++++++.....+-.+++.+++...| .+.             
T Consensus        98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------  164 (274)
T 1ja9_A           98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI-------------  164 (274)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC-------------
T ss_pred             CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCC-------------
Confidence             56668888765322    23344455689999999999999887652111455555543332 110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H----h-cCCcceEEecCCceeecCCCCccc-hhh----HH--HHHH-HHhhh
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K----L-AGKVAWSVHRPGLLLGSSHRSLYN-FLG----CL--CVYG-AVCKH  227 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~----~-~~~~~~~ilRp~~v~G~~~~~~~~-~~~----~~--~~~~-~~~~~  227 (303)
                           .+..+   |+.+|...+     +    . .+ ++++++||+.++++....... +..    ..  .... .+.. 
T Consensus       165 -----~~~~~---Y~~sK~a~~~~~~~~~~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (274)
T 1ja9_A          165 -----PNHAL---YAGSKAAVEGFCRAFAVDCGAKG-VTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN-  234 (274)
T ss_dssp             -----CSCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH-
T ss_pred             -----CCCch---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHh-
Confidence                 00223   777766554     1    1 24 999999999998742110000 000    00  0000 0000 


Q ss_pred             CCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          228 LNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       228 ~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                       +             .....+.+++|+|+++++++..+... ..|+.|+++++.
T Consensus       235 -~-------------~~~~~~~~~~dva~~i~~l~~~~~~~-~~G~~~~v~gG~  273 (274)
T 1ja9_A          235 -M-------------NPLKRIGYPADIGRAVSALCQEESEW-INGQVIKLTGGG  273 (274)
T ss_dssp             -T-------------STTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC
T ss_pred             -c-------------CCCCCccCHHHHHHHHHHHhCccccc-ccCcEEEecCCc
Confidence             0             12234678999999999988754321 235899998873

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.77  E-value=2.5e-17  Score=137.31  Aligned_cols=216  Identities=15%  Similarity=0.073  Sum_probs=135.6

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc---cCc
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL---LED   95 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~---~~~   95 (303)
                      .....+|+||||||+|+||++++++|+ +.|++|++++|+..+..    ....++.++.+|+.+.+++.++++.   +|.
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLH-KLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            334467899999999999999999999 68999999999875532    1235788999999999999999884   556


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      ++|.|+....    .....+..+.+++|+.++.++++++...  ..+..+++.+++...|.+.                 
T Consensus        88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------------  150 (249)
T 3f9i_A           88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN-----------------  150 (249)
T ss_dssp             EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC-----------------
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC-----------------
Confidence            8888765332    1223334458999999999998887654  1222355555543232110                 


Q ss_pred             CCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                          .+...|+.+|...+         +. .+ +++.+++|+.+.++......   ...  ...+..  .          
T Consensus       151 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~---~~~--~~~~~~--~----------  208 (249)
T 3f9i_A          151 ----PGQANYCASKAGLIGMTKSLSYEVATRG-ITVNAVAPGFIKSDMTDKLN---EKQ--REAIVQ--K----------  208 (249)
T ss_dssp             ----SCSHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBC------CC---HHH--HHHHHH--H----------
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHHHHcC-cEEEEEecCccccCcccccC---HHH--HHHHHh--c----------
Confidence                01122787776444         11 23 99999999999874322110   110  000111  1          


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                         .....+.+++|+|.++++++..+... ..|+.|++.+|..
T Consensus       209 ---~~~~~~~~~~dva~~~~~l~s~~~~~-~tG~~~~vdgG~~  247 (249)
T 3f9i_A          209 ---IPLGTYGIPEDVAYAVAFLASNNASY-ITGQTLHVNGGML  247 (249)
T ss_dssp             ---CTTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSS
T ss_pred             ---CCCCCCcCHHHHHHHHHHHcCCccCC-ccCcEEEECCCEe
Confidence               11223667899999999988765332 3468999998764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.77  E-value=3.6e-17  Score=137.95  Aligned_cols=226  Identities=10%  Similarity=0.015  Sum_probs=144.1

Q ss_pred             CCCCCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc--
Q 042242           23 REVDAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL--   92 (303)
Q Consensus        23 ~~~~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~--   92 (303)
                      .....+|+||||||+  |+||++++++|+ +.|++|++++|+.....      ....++.++.+|++|.++++++++.  
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACK-REGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHH-HcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH
Confidence            344567999999999  999999999999 68999999999853221      1234588999999999998888874  


Q ss_pred             -----cCceeEEeecccc--------c-CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcc
Q 042242           93 -----LEDVTHIFWVTWA--------S-QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        93 -----~~~V~~~~~~~~~--------~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                           +|.++|.|+....        . .+..+....+++|+.++..+++++.....+-.+++.+++...+...      
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------  161 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAI------  161 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCC------
Confidence                 3568888765432        1 3455556789999999999999988763222344444443222110      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~  228 (303)
                                  .+...   |+.+|...+        ..... +++.+++|+.|..+.....    ........ ...  
T Consensus       162 ------------~~~~~---Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~----~~~~~~~~~~~~--  220 (271)
T 3ek2_A          162 ------------PNYNT---MGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI----KSFGKILDFVES--  220 (271)
T ss_dssp             ------------TTTTH---HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC----HHHHHHHHHHHH--
T ss_pred             ------------CCccc---hhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc----cchHHHHHHHHh--
Confidence                        00223   777665544        11122 9999999999987432211    11111111 111  


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHH
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWP  290 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~  290 (303)
                      ..|             +..+.+++|+|.++++++...... ..|+.+++.+|...++.++.+
T Consensus       221 ~~~-------------~~~~~~pedva~~i~~l~s~~~~~-~tG~~i~vdgG~~~~~~~~~~  268 (271)
T 3ek2_A          221 NSP-------------LKRNVTIEQVGNAGAFLLSDLASG-VTAEVMHVDSGFNAVVGGMAG  268 (271)
T ss_dssp             HST-------------TSSCCCHHHHHHHHHHHHSGGGTT-CCSEEEEESTTGGGBCCCC--
T ss_pred             cCC-------------cCCCCCHHHHHHHHHHHcCcccCC-eeeeEEEECCCeeeehhhhhh
Confidence            111             122567899999999988754322 446999999999888887754

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.76  E-value=6.3e-17  Score=136.04  Aligned_cols=214  Identities=15%  Similarity=0.104  Sum_probs=140.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+..+...    ...++.++.+|++|.++++++++       .+|
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   88 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVD   88 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            356899999999999999999999 689999999998765321    13468899999999999988887       567


Q ss_pred             ceeEEeeccccc----------CChHHHHHHHHHHHHHHHHHHHHHhhcc--C------CccEEEEeecccccccccCCC
Q 042242           95 DVTHIFWVTWAS----------QFASDMHKCCEQNKAMMCNALNAILPRA--K------ALKHVSLQTGMKHYVSLQGLP  156 (303)
Q Consensus        95 ~V~~~~~~~~~~----------~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~------~~~~~~~~s~~~~y~~~~~~~  156 (303)
                      .|+|+++.....          ....+..+.+++|+.++.++++++....  .      +..+++.+++...+...    
T Consensus        89 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~----  164 (265)
T 2o23_A           89 VAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQ----  164 (265)
T ss_dssp             EEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC----
T ss_pred             EEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCC----
Confidence            788987654221          2344555689999999999999987651  1      34566666654333111    


Q ss_pred             cccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhh
Q 042242          157 EEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCK  226 (303)
Q Consensus       157 g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  226 (303)
                                    .+...   |+.+|...+         +. .+ +++++++|+.+.++..... .  ...  ...+..
T Consensus       165 --------------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~-~--~~~--~~~~~~  221 (265)
T 2o23_A          165 --------------VGQAA---YSASKGGIVGMTLPIARDLAPIG-IRVMTIAPGLFGTPLLTSL-P--EKV--CNFLAS  221 (265)
T ss_dssp             --------------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCCC---------------CHHHH
T ss_pred             --------------CCCch---hHHHHHHHHHHHHHHHHHHhhcC-cEEEEEEeccccCcccccc-C--HHH--HHHHHH
Confidence                          00223   777766443         11 23 9999999999987422110 0  000  000000


Q ss_pred             hCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          227 HLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                        ..|.  +          ..+.+++|+|.++++++.++...   |+.+++.++..++
T Consensus       222 --~~~~--~----------~~~~~~~dva~~~~~l~~~~~~~---G~~i~vdgG~~~~  262 (265)
T 2o23_A          222 --QVPF--P----------SRLGDPAEYAHLVQAIIENPFLN---GEVIRLDGAIRMQ  262 (265)
T ss_dssp             --TCSS--S----------CSCBCHHHHHHHHHHHHHCTTCC---SCEEEESTTCCCC
T ss_pred             --cCCC--c----------CCCCCHHHHHHHHHHHhhcCccC---ceEEEECCCEecC
Confidence              1111  0          12568899999999988665443   4899998886543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.76  E-value=7.6e-17  Score=137.77  Aligned_cols=219  Identities=10%  Similarity=0.001  Sum_probs=142.5

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +.+|+||||||+|  +||++++++|+ ..|++|++++|+.....      .....+.++++|++|.++++++++.     
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVC-AQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4578999999998  99999999999 68999999999864321      1123567899999999998888764     


Q ss_pred             --cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           93 --LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 --~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                        +|.++|.|+...        ...+..+..+.+++|+.++.++++++.....+-.+++.+++...+...          
T Consensus       107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~----------  176 (296)
T 3k31_A          107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVV----------  176 (296)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC----------
T ss_pred             CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCC----------
Confidence              466888876532        234455566789999999999999998763333345555543222110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHH-HHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVY-GAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~  232 (303)
                              .....   |+.+|...+        ..... +++..++|+.|..+.....    ...... .....  ..| 
T Consensus       177 --------~~~~~---Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~----~~~~~~~~~~~~--~~p-  238 (296)
T 3k31_A          177 --------PHYNV---MGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI----SDFHYILTWNKY--NSP-  238 (296)
T ss_dssp             --------TTTTH---HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC----HHHHHHHHHHHH--HST-
T ss_pred             --------CCchh---hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc----cchHHHHHHHHh--cCC-
Confidence                    00223   777665444        11122 9999999999998532211    111100 11111  112 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHH
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWK  286 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~  286 (303)
                                  +..+.+++|+|.++++++...... ..|+.+++.+|..++..
T Consensus       239 ------------~~r~~~pedvA~~v~fL~s~~a~~-itG~~i~vdGG~~~~~~  279 (296)
T 3k31_A          239 ------------LRRNTTLDDVGGAALYLLSDLGRG-TTGETVHVDCGYHVVGM  279 (296)
T ss_dssp             ------------TSSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGCSS
T ss_pred             ------------CCCCCCHHHHHHHHHHHcCCccCC-ccCCEEEECCCccccCC
Confidence                        112557899999999988654322 45689999988765543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.76  E-value=6.1e-17  Score=137.19  Aligned_cols=228  Identities=13%  Similarity=0.025  Sum_probs=143.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc------------ccc-------ccCCCeEEEEecCCCHHH
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE------------ITA-------IQSSSYCFISCDLLNPLD   85 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~------------~~~-------~~~~~~~~~~~D~~~~~~   85 (303)
                      .+.+|+||||||+|+||++++++|+ +.|++|++++|+..            ...       ....++.++++|++|.++
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLA-ADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES   88 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence            3457899999999999999999999 68999999998732            100       113478899999999999


Q ss_pred             HHHHHh-------ccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCC
Q 042242           86 IKRKLT-------LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGL  155 (303)
Q Consensus        86 l~~~~~-------~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~  155 (303)
                      ++++++       .+|.++|.|+.........+..+.+++|+.++..+++++....   ..-.+++.+++...+.+.   
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---  165 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGV---  165 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC---
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCC---
Confidence            888886       5677889887655444555566789999999999999976641   112355555543332111   


Q ss_pred             CcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHh
Q 042242          156 PEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVC  225 (303)
Q Consensus       156 ~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  225 (303)
                               ..  +   ..+...|+.+|...+         +. .+ +++..++|+.|.++.....  ....  ......
T Consensus       166 ---------~~--~---~~~~~~Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~--~~~~--~~~~~~  226 (278)
T 3sx2_A          166 ---------GS--A---DPGSVGYVAAKHGVVGLMRVYANLLAGQM-IRVNSIHPSGVETPMINNE--FTRE--WLAKMA  226 (278)
T ss_dssp             ---------CC--S---SHHHHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCBSSTTTSSH--HHHH--HHHHHH
T ss_pred             ---------cc--C---CCCchHhHHHHHHHHHHHHHHHHHHhccC-cEEEEEecCCccCccchhh--hHHH--HHhhcc
Confidence                     00  0   011223777776544         12 23 9999999999998532211  1001  010111


Q ss_pred             hhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          226 KHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      .. .......+..    .. ..+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       227 ~~-~~~~~~~~~~----~p-~~~~~p~dvA~~v~~l~s~~~~~-itG~~i~vdGG~~  276 (278)
T 3sx2_A          227 AA-TDTPGAMGNA----MP-VEVLAPEDVANAVAWLVSDQARY-ITGVTLPVDAGFL  276 (278)
T ss_dssp             HH-CC--CTTSCS----SS-CSSBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTTT
T ss_pred             ch-hhhhhhhhhh----cC-cCcCCHHHHHHHHHHHhCccccc-ccCCEEeECCCcc
Confidence            10 0000000100    11 34678999999999988654322 4468999988854

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.76  E-value=2.8e-17  Score=139.14  Aligned_cols=221  Identities=10%  Similarity=0.040  Sum_probs=142.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------cc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LL   93 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~   93 (303)
                      .+++|+||||||+|+||++++++|+ +.|++|++++|+.....    ....++.++++|++|.++++++++       .+
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFA-KNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3457899999999999999999999 68999999999865432    123568889999999999888776       45


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.++|.|+....    ..+..+..+.+++|+.++..+++++....  .+..+++.+++...+...               
T Consensus       103 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------  167 (277)
T 4dqx_A          103 DVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAI---------------  167 (277)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCC---------------
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCC---------------
Confidence            668888765322    23345555688999999999999886541  223355555543332110               


Q ss_pred             CCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccc-hhhHHHHHHHHhhhCCCceeeCC
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYN-FLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                            .+...|+.+|...+         +. .+ +++.+++|+.+.++....... .............  .       
T Consensus       168 ------~~~~~Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--~-------  231 (277)
T 4dqx_A          168 ------ADRTAYVASKGAISSLTRAMAMDHAKEG-IRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNA--R-------  231 (277)
T ss_dssp             ------TTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHT--T-------
T ss_pred             ------CCChhHHHHHHHHHHHHHHHHHHhhhcC-eEEEEEeeCcCcCchhhhhcccccchhHHHHHHHh--c-------
Confidence                  11122777776554         22 23 999999999998732000000 0000000000000  1       


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                            .....+.+++|+|.++++++...... ..|+.+++.+|..++
T Consensus       232 ------~~~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~~~~  272 (277)
T 4dqx_A          232 ------AVMDRMGTAEEIAEAMLFLASDRSRF-ATGSILTVDGGSSIG  272 (277)
T ss_dssp             ------STTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESSSSSSC
T ss_pred             ------CcccCCcCHHHHHHHHHHHhCCccCC-CcCCEEEECCchhhh
Confidence                  11223668899999999988655432 346899999987654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.76  E-value=2.3e-17  Score=138.46  Aligned_cols=219  Identities=11%  Similarity=0.004  Sum_probs=139.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.....       ...++.++.+|++|.++++++++       
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999 689999999998654320       12367889999999998888774       


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.++|.++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+|+...+...            
T Consensus        86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  153 (260)
T 2ae2_A           86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV------------  153 (260)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC------------
Confidence             46668888765322    2334455568999999999999988653  1223456665553232110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCceeecCCCCccchhhHHHH-HHHHhhhCCCcee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCV-YGAVCKHLNLPFV  233 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  233 (303)
                            .+..+   |+.+|...+     +.     .+ +++++++|+.+.++........ ..... ...+..  ..|  
T Consensus       154 ------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~--~~~--  218 (260)
T 2ae2_A          154 ------PYEAV---YGATKGAMDQLTRCLAFEWAKDN-IRVNGVGPGVIATSLVEMTIQD-PEQKENLNKLID--RCA--  218 (260)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEECSBCSHHHHHHTTS-HHHHHHHHHHHH--TST--
T ss_pred             ------CCcch---HHHHHHHHHHHHHHHHHHHhhcC-cEEEEEecCCCCCcchhhhccC-hhhHHHHHHHHh--cCC--
Confidence                  00223   777776554     11     23 9999999999987421100000 00000 001111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                                 ...+.+++|+|.++++++..+... ..|+.+++.++...+
T Consensus       219 -----------~~~~~~~~dvA~~v~~l~s~~~~~-~tG~~~~vdgG~~~~  257 (260)
T 2ae2_A          219 -----------LRRMGEPKELAAMVAFLCFPAASY-VTGQIIYVDGGLMAN  257 (260)
T ss_dssp             -----------TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGC
T ss_pred             -----------CCCCCCHHHHHHHHHHHcCccccC-CCCCEEEECCCcccc
Confidence                       123678899999999887654321 345899998886543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.76  E-value=5.8e-17  Score=136.35  Aligned_cols=217  Identities=8%  Similarity=0.034  Sum_probs=138.0

Q ss_pred             CCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|+|+||||+  |+||++++++|+ +.|++|++++|++....      .......++.+|++|.++++++++       
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35899999999  999999999999 68999999999862110      111345788999999999888876       


Q ss_pred             ccCceeEEeecccc--------c-CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           92 LLEDVTHIFWVTWA--------S-QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 ~~~~V~~~~~~~~~--------~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                      .+|.++|.|+....        . .+..+..+.+++|+.++.++++++.....+-.+++.+++...+...          
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------  156 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI----------  156 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC----------
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCC----------
Confidence            34568888765321        1 3444555689999999999999998762212345555543222110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                              .+..+   |+.+|...+        ..... +++.+++|+.++++..... ......  ...+..  ..|  
T Consensus       157 --------~~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~--~~~~~~--~~p--  218 (265)
T 1qsg_A          157 --------PNYNV---MGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKM--LAHCEA--VTP--  218 (265)
T ss_dssp             --------TTTTH---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-TTHHHH--HHHHHH--HST--
T ss_pred             --------CCchH---HHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-cccHHH--HHHHHh--cCC--
Confidence                    00223   777766554        11122 9999999999998532111 000110  011111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                                 +..+.+++|+|.++++++..+... ..|+.|++.++...+
T Consensus       219 -----------~~~~~~~~dva~~v~~l~s~~~~~-~tG~~~~vdgG~~~~  257 (265)
T 1qsg_A          219 -----------IRRTVTIEDVGNSAAFLCSDLSAG-ISGEVVHVDGGFSIA  257 (265)
T ss_dssp             -----------TSSCCCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTGGGB
T ss_pred             -----------CCCCCCHHHHHHHHHHHhCchhcC-ccCCEEEECCCcCCC
Confidence                       112568899999999988654321 345899999886654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.76  E-value=3.4e-17  Score=139.69  Aligned_cols=242  Identities=16%  Similarity=0.073  Sum_probs=149.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhcc---CceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTLL---EDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~---~~V~~   98 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+..+..    ....+++++.+|++|.++++++++.+   |.++|
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~   92 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELA-RRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLIN   92 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEE
Confidence            457899999999999999999999 68999999999876532    12346889999999999999999855   56888


Q ss_pred             Eeeccccc--CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCcc
Q 042242           99 IFWVTWAS--QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus        99 ~~~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      .|+.....  .+.......+++|+.++.++++++.....  .+++.+++...|.+...     ......+..+   ..+.
T Consensus        93 nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~--~riv~isS~~~~~~~~~-----~~~~~~~~~~---~~~~  162 (291)
T 3rd5_A           93 NAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLT--DRVVTVSSMAHWPGRIN-----LEDLNWRSRR---YSPW  162 (291)
T ss_dssp             CCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEE--EEEEEECCGGGTTCCCC-----SSCTTCSSSC---CCHH
T ss_pred             CCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hheeEeechhhccCCCC-----cccccccccC---CCCc
Confidence            87653221  12233334899999999999999987632  25666665545422211     0111111111   1223


Q ss_pred             chHHHHHHHHH---------Hhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhc
Q 042242          177 FYYVLEDLLKE---------KLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYC  245 (303)
Q Consensus       177 ~~y~~~k~~~e---------~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  245 (303)
                      ..|+.+|...+         +.. +. +++..++||.|..+......   ....  ..+.   ..+    .        .
T Consensus       163 ~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~---~~~~--~~~~---~~~----~--------~  222 (291)
T 3rd5_A          163 LAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG---RKLG--DALM---SAA----T--------R  222 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC--------------------------------------
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccc---hHHH--HHHH---HHH----H--------H
Confidence            34888777554         222 22 88999999999764221110   0000  0000   001    0        0


Q ss_pred             ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc---------------cHHhhHHHHHHHhcccCC
Q 042242          246 LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF---------------TWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       246 ~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~---------------s~~e~~~~i~~~~g~~~~  301 (303)
                      ....+++++|.++++++..+..   .|+.|++.++..-               -.+++++...+.+|...+
T Consensus       223 ~~~~~~~~~A~~~~~l~~~~~~---~G~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~~~~~  290 (291)
T 3rd5_A          223 VVATDADFGARQTLYAASQDLP---GDSFVGPRFGYLGRTQPVGRSRRAKDAGMAAALWALSEQLTKTEFP  290 (291)
T ss_dssp             --CHHHHHHHHHHHHHHHSCCC---TTCEEEETTSSSSCEEECCCCTGGGCHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHhCCHHHHHHHHHHHHcCCCC---CCceeCCcccccCccccCCCCcccCCHHHHHHHHHHHHHHHccccC
Confidence            1134688999999999887543   3588877654321               133567777777776544

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.76  E-value=1.1e-16  Score=134.48  Aligned_cols=210  Identities=13%  Similarity=0.081  Sum_probs=137.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~   98 (303)
                      +++|+||||||+|+||++++++|+ +.|++|++++|++..    ..++.++.+|++|.++++++++       .+|.++|
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            6 LRDKVVIVTGASMGIGRAIAERFV-DEGSKVIDLSIHDPG----EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             GTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESSCCC----SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEecCccc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            456899999999999999999999 689999999998754    2468889999999999888776       4677888


Q ss_pred             Eeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           99 IFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        99 ~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      .++.....    .+..+..+.+++|+.++.++++++....  .+..+++.+|+...+...                  .+
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~  142 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT------------------KN  142 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC------------------TT
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC------------------CC
Confidence            87653321    2444555689999999999998887651  223456666553333110                  00


Q ss_pred             CCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhh-----HH----HHHHHHhhhCCCceee
Q 042242          173 KSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLG-----CL----CVYGAVCKHLNLPFVF  234 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~  234 (303)
                      ..+   |+.+|...+         +... +++++++|+.+.++...   ....     ..    .....+..  .     
T Consensus       143 ~~~---Y~~sK~a~~~~~~~la~e~~~~-i~vn~v~PG~v~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-----  208 (264)
T 2dtx_A          143 ASA---YVTSKHAVIGLTKSIALDYAPL-LRCNAVCPATIDTPLVR---KAAELEVGSDPMRIEKKISEWGH--E-----  208 (264)
T ss_dssp             BHH---HHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSBCSHHHH---HHHHHHHCSCHHHHHHHHHHHHH--H-----
T ss_pred             chh---HHHHHHHHHHHHHHHHHHhcCC-cEEEEEEeCCCcCcchh---hhhhcccccCchhhHHHHHHHHh--c-----
Confidence            122   777766554         2223 89999999998763110   0000     00    00000000  0     


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              .....+.+++|+|.++++++..+... ..|+.+++.++.
T Consensus       209 --------~p~~~~~~p~dvA~~v~~l~s~~~~~-~tG~~i~vdGG~  246 (264)
T 2dtx_A          209 --------HPMQRIGKPQEVASAVAFLASREASF-ITGTCLYVDGGL  246 (264)
T ss_dssp             --------STTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTG
T ss_pred             --------CCCCCCcCHHHHHHHHHHHhCchhcC-CCCcEEEECCCc
Confidence                    11223678999999999988654321 345889988875

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.76  E-value=3.7e-17  Score=139.41  Aligned_cols=215  Identities=13%  Similarity=0.055  Sum_probs=141.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +.+|+||||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.++++++++      
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFA-KEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999999 68999999999875321        113468889999999998888776      


Q ss_pred             -ccCceeEEeeccccc-----CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 -LLEDVTHIFWVTWAS-----QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 -~~~~V~~~~~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       .+|.++|.|+.....     .+..+..+.+++|+.++.++++++.....+-.+++.+++...|.+..            
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------------  191 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE------------  191 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCT------------
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCC------------
Confidence             456688887653322     24455566899999999999999987633334566665543431110            


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                            +...   |+.+|...+         +. .+ +++..++|+.|+++......   .. .....+.  ..      
T Consensus       192 ------~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~~---~~-~~~~~~~--~~------  249 (291)
T 3ijr_A          192 ------TLID---YSATKGAIVAFTRSLSQSLVQKG-IRVNGVAPGPIWTPLIPSSF---DE-KKVSQFG--SN------  249 (291)
T ss_dssp             ------TCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCSTHHHHHS---CH-HHHHHTT--TT------
T ss_pred             ------CChh---HHHHHHHHHHHHHHHHHHHhhcC-EEEEEEeeCCCcCCcccccC---CH-HHHHHHH--cc------
Confidence                  0122   777766544         11 24 99999999999884210000   00 0000000  01      


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                             ..+..+.+++|+|.++++++...... ..|+.+++.+|..+
T Consensus       250 -------~p~~r~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdGG~~~  289 (291)
T 3ijr_A          250 -------VPMQRPGQPYELAPAYVYLASSDSSY-VTGQMIHVNGGVIV  289 (291)
T ss_dssp             -------STTSSCBCGGGTHHHHHHHHSGGGTT-CCSCEEEESSSCCC
T ss_pred             -------CCCCCCcCHHHHHHHHHHHhCCccCC-CcCCEEEECCCccc
Confidence                   11223567888999999988654322 34689999888654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.76  E-value=7.6e-17  Score=135.93  Aligned_cols=215  Identities=13%  Similarity=0.094  Sum_probs=138.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.++++++++       
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLH-DAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999 78999999986544321        113568899999999998888776       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.|+....    .....+....+++|+.++.++++++...  ..+..+++.+++...+...             
T Consensus       103 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  169 (269)
T 3gk3_A          103 KVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGA-------------  169 (269)
T ss_dssp             CCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-------------
T ss_pred             CCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCC-------------
Confidence            45668888765432    2244555568999999999999987653  1223455555543232111             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+...   |+.+|...+         +. .+ +++.+++|+.+..+......   ...     .     ......
T Consensus       170 -----~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~~~~---~~~-----~-----~~~~~~  227 (269)
T 3gk3_A          170 -----FGQAN---YASAKAGIHGFTKTLALETAKRG-ITVNTVSPGYLATAMVEAVP---QDV-----L-----EAKILP  227 (269)
T ss_dssp             -----TTBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCTTTTC--------------------CCSGG
T ss_pred             -----CCcch---HHHHHHHHHHHHHHHHHHhhhcC-CEEEEEecCcccchhhhhhc---hhH-----H-----HHHhhh
Confidence                 00122   777776443         11 23 99999999999874322110   000     0     000001


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      .      .....+.+++|+|.++++++...... ..|+.+++.+|..+|
T Consensus       228 ~------~~~~~~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdgG~~~s  269 (269)
T 3gk3_A          228 Q------IPVGRLGRPDEVAALIAFLCSDDAGF-VTGADLAINGGMHMS  269 (269)
T ss_dssp             G------CTTSSCBCHHHHHHHHHHHTSTTCTT-CCSCEEEESTTSCCC
T ss_pred             c------CCcCCccCHHHHHHHHHHHhCCCcCC-eeCcEEEECCCEeCc
Confidence            1      12223568899999999888665322 446899999987653

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.76  E-value=1.2e-17  Score=138.81  Aligned_cols=212  Identities=18%  Similarity=0.128  Sum_probs=135.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      +|+|+||||+|+||++++++|+ +.|++|+++ +|++....     .  ...++.++.+|++|.++++++++       .
T Consensus         1 ~k~vlVTGasggiG~~la~~l~-~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLG-KAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            3789999999999999999999 689999985 67644321     0  13467889999999999988887       4


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.|+|+++....    ..+..+..+.+++|+.++.++++++.+..  .+..+++.+|+...+.+.          +   
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~---  146 (244)
T 1edo_A           80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN----------I---  146 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------T---
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCC----------C---
Confidence            6778998765432    22344555689999999999999887641  123456665553222110          0   


Q ss_pred             CCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                           +..+   |+.+|...+        ..... ++++++||+.++++.....   ....  ...+..  ..|      
T Consensus       147 -----~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~--~~~~~~--~~~------  205 (244)
T 1edo_A          147 -----GQAN---YAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL---GEDM--EKKILG--TIP------  205 (244)
T ss_dssp             -----TCHH---HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CHHH--HHHHHT--SCT------
T ss_pred             -----CCcc---chhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc---ChHH--HHHHhh--cCC------
Confidence                 0223   777666443        11122 9999999999987421111   0110  000111  111      


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                             +..+.+++|+|.++++++.++......|+.|++.++.
T Consensus       206 -------~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~  242 (244)
T 1edo_A          206 -------LGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI  242 (244)
T ss_dssp             -------TCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred             -------CCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence                   1125688999999999885543322346899998874

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.75  E-value=5.5e-17  Score=136.75  Aligned_cols=219  Identities=11%  Similarity=0.040  Sum_probs=139.7

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      ......+|+||||||+|+||++++++|+ +.|++|++++|+....   ...+..+++|++|.+++.++++       .+|
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALV-RYGAKVVSVSLDEKSD---VNVSDHFKIDVTNEEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCC--C---TTSSEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCchhc---cCceeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            3445568999999999999999999999 6899999999987653   2367788999999999888776       456


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.|+....    ..+.....+.+++|+.++..+++++...  ..+..+++.+++...|...                
T Consensus        84 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------  147 (269)
T 3vtz_A           84 ILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAAT----------------  147 (269)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC----------------
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC----------------
Confidence            78888765322    2234445568899999999999987764  1123355555554333111                


Q ss_pred             CCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccch-----hhHHHHH-HHHhhhCCCcee
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNF-----LGCLCVY-GAVCKHLNLPFV  233 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~  233 (303)
                        .+...   |+.+|...+         +..+ +++.+++||.|.++........     ....... ..+..  .    
T Consensus       148 --~~~~~---Y~asKaa~~~l~~~la~e~~~~-i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----  215 (269)
T 3vtz_A          148 --KNAAA---YVTSKHALLGLTRSVAIDYAPK-IRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGR--Q----  215 (269)
T ss_dssp             --TTCHH---HHHHHHHHHHHHHHHHHHHTTT-EEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHH--H----
T ss_pred             --CCChh---HHHHHHHHHHHHHHHHHHhcCC-CEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHh--c----
Confidence              00223   777766554         2234 9999999999987421100000     0000000 00000  0    


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                               .....+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       216 ---------~p~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~~  254 (269)
T 3vtz_A          216 ---------HPMGRIGRPEEVAEVVAFLASDRSSF-ITGACLTVDGGLL  254 (269)
T ss_dssp             ---------STTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             ---------CCCCCCcCHHHHHHHHHHHhCCccCC-CcCcEEEECCCcc
Confidence                     12233668899999999988755332 4568999998864

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.75  E-value=8.6e-17  Score=135.55  Aligned_cols=213  Identities=14%  Similarity=0.083  Sum_probs=140.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.++++++++      
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELA-AAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            457899999999999999999999 68999999998643321        113468889999999999888776      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.            
T Consensus       105 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  172 (269)
T 4dmm_A          105 GRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN------------  172 (269)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC------------
Confidence             45668888765432    2344555568999999999999987654  1122345555543222111            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .....   |+.+|...+         +. .+ +++.+++|+.|.++...       .... ..+..  ..|   
T Consensus       173 ------~~~~~---Y~asK~a~~~l~~~la~e~~~~g-i~vn~v~PG~v~T~~~~-------~~~~-~~~~~--~~p---  229 (269)
T 4dmm_A          173 ------PGQAN---YSAAKAGVIGLTKTVAKELASRG-ITVNAVAPGFIATDMTS-------ELAA-EKLLE--VIP---  229 (269)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBTTSCSC-------HHHH-HHHGG--GCT---
T ss_pred             ------CCchh---HHHHHHHHHHHHHHHHHHHhhhC-cEEEEEEECCCcCcccc-------cccH-HHHHh--cCC---
Confidence                  00223   777776443         21 23 99999999999874221       1100 01111  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                                +..+.+++|+|.++++++..+......|+.+++.+|..++
T Consensus       230 ----------~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~s  269 (269)
T 4dmm_A          230 ----------LGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVMA  269 (269)
T ss_dssp             ----------TSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCCC
T ss_pred             ----------CCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeecC
Confidence                      1235688999999999987744332446999999886653

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.75  E-value=2.2e-17  Score=133.14  Aligned_cols=184  Identities=13%  Similarity=0.040  Sum_probs=124.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc---cCceeEEeecccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIFWVTWA  105 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~~~~~~  105 (303)
                      ++|+||||+|+||++++++|+  .|++|++++|++.          .+.+|+.|.++++++++.   +|.|+|+++....
T Consensus         4 M~vlVtGasg~iG~~~~~~l~--~g~~V~~~~r~~~----------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~~~   71 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE--KKAEVITAGRHSG----------DVTVDITNIDSIKKMYEQVGKVDAIVSATGSATF   71 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT--TTSEEEEEESSSS----------SEECCTTCHHHHHHHHHHHCCEEEEEECCCCCCC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH--CCCeEEEEecCcc----------ceeeecCCHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence            379999999999999999997  5899999999864          467999999999999887   5779999764322


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHH
Q 042242          106 ----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVL  181 (303)
Q Consensus       106 ----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~  181 (303)
                          ..+..+..+.+++|+.++.++++++.+...+-.+++.+++...+..                  ..+..+   |+.
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~------------------~~~~~~---Y~~  130 (202)
T 3d7l_A           72 SPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDP------------------IVQGAS---AAM  130 (202)
T ss_dssp             CCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSC------------------CTTCHH---HHH
T ss_pred             CChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCC------------------CCccHH---HHH
Confidence                1233444567899999999999999876211135555544322200                  011223   777


Q ss_pred             HHHHHH-----Hhc--CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          182 EDLLKE-----KLA--GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       182 ~k~~~e-----~~~--~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      +|...+     +..  .. ++++++||+.++++..        ..      ..  .             .....+++++|
T Consensus       131 sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~--------~~------~~--~-------------~~~~~~~~~~d  181 (202)
T 3d7l_A          131 ANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD--------KL------EP--F-------------FEGFLPVPAAK  181 (202)
T ss_dssp             HHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH--------HH------GG--G-------------STTCCCBCHHH
T ss_pred             HHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh--------hh------hh--h-------------ccccCCCCHHH
Confidence            766555     221  12 9999999999998421        00      00  0             11224678899


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEee
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAI  278 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~  278 (303)
                      +|++++.++. ...   .|+.||+.
T Consensus       182 va~~~~~~~~-~~~---~G~~~~vd  202 (202)
T 3d7l_A          182 VARAFEKSVF-GAQ---TGESYQVY  202 (202)
T ss_dssp             HHHHHHHHHH-SCC---CSCEEEEC
T ss_pred             HHHHHHHhhh-ccc---cCceEecC
Confidence            9999888773 322   34788873

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.75  E-value=6e-17  Score=137.27  Aligned_cols=223  Identities=14%  Similarity=0.007  Sum_probs=142.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ..+|+||||||+|+||++++++|+ +.|++|++++|+.....     .  ...++.++.+|++|.+++.++++       
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFA-REGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999 68999999999865432     1  13467888999999998888776       


Q ss_pred             ccCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .+|.++|.|+....     ..+..+..+.+++|+.++.++++++...  ..+-.+++.+++...+..           + 
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~-  152 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA-----------G-  152 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB-----------C-
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC-----------C-
Confidence            45678888764321     2344555668999999999999988765  112234555544322200           0 


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccch-hhHHHHHHHHhhhCCCcee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNF-LGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  233 (303)
                           ..+..+   |+.+|...+         +. .+ +++.+++||.|.++........ ....  ...+..  ..|  
T Consensus       153 -----~~~~~~---Y~asKaa~~~l~~~la~e~~~~g-Irvn~v~PG~v~T~~~~~~~~~~~~~~--~~~~~~--~~p--  217 (280)
T 3tox_A          153 -----FAGVAP---YAASKAGLIGLVQALAVELGARG-IRVNALLPGGTDTPANFANLPGAAPET--RGFVEG--LHA--  217 (280)
T ss_dssp             -----CTTCHH---HHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEECSBSSTTSGGGSTTCCTHH--HHHHHT--TST--
T ss_pred             -----CCCchh---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEEECCCCCchhhhhccccCHHH--HHHHhc--cCc--
Confidence                 000223   777776544         22 23 9999999999998532211100 0110  000111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhh
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEI  288 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~  288 (303)
                                 +..+.+++|+|.++++++...... ..|+.+++.+|..++..-+
T Consensus       218 -----------~~r~~~pedvA~~v~~L~s~~a~~-itG~~i~vdGG~~~~~~a~  260 (280)
T 3tox_A          218 -----------LKRIARPEEIAEAALYLASDGASF-VTGAALLADGGASVTKAAE  260 (280)
T ss_dssp             -----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGCC---
T ss_pred             -----------cCCCcCHHHHHHHHHHHhCccccC-CcCcEEEECCCcccccccc
Confidence                       123668899999999988764332 4469999999876554433

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.75  E-value=6.9e-17  Score=136.41  Aligned_cols=217  Identities=12%  Similarity=0.044  Sum_probs=138.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHh------c
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLT------L   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~------~   92 (303)
                      .+.+|++|||||+|+||++++++|+ +.|++|++++|.+....      ....++.++.+|++|.+++.++.+      .
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYA-RAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRR  106 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence            3457899999999999999999999 68999999997643211      112467889999999998877654      4


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.              
T Consensus       107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~--------------  172 (273)
T 3uf0_A          107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGG--------------  172 (273)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------
T ss_pred             CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCC--------------
Confidence            6668888765432    2244555568999999999999987543  1123355555543332110              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          .+...   |+.+|...+         +. .+ +++..++|+.|.++.....   .........+..  ..|     
T Consensus       173 ----~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~--~~p-----  234 (273)
T 3uf0_A          173 ----RNVAA---YAASKHAVVGLTRALASEWAGRG-VGVNALAPGYVVTANTAAL---RADDERAAEITA--RIP-----  234 (273)
T ss_dssp             ----SSCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSGGGHHH---HTSHHHHHHHHH--HST-----
T ss_pred             ----CCChh---HHHHHHHHHHHHHHHHHHHhhcC-cEEEEEEeCCCcCCchhhc---ccCHHHHHHHHh--cCC-----
Confidence                00223   777776544         11 23 9999999999998422110   000000011111  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                              ...+.+++|+|.++++++...... ..|+.+++.+|...
T Consensus       235 --------~~r~~~pedva~~v~~L~s~~a~~-itG~~i~vdGG~~~  272 (273)
T 3uf0_A          235 --------AGRWATPEDMVGPAVFLASDAASY-VHGQVLAVDGGWLA  272 (273)
T ss_dssp             --------TSSCBCGGGGHHHHHHHHSGGGTT-CCSCEEEESTTGGG
T ss_pred             --------CCCCCCHHHHHHHHHHHhCchhcC-CcCCEEEECcCccC
Confidence                    112567788999999988654322 44689999988654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.75  E-value=3.9e-17  Score=136.30  Aligned_cols=208  Identities=13%  Similarity=0.022  Sum_probs=135.6

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc-------C
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL-------E   94 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-------~   94 (303)
                      .....|+|+|+||||+|+||++++++|+ +.|++|++++|++.+..     ...+.+|++|.++++++++.+       |
T Consensus        16 ~~~~~m~k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r~~~~~~-----~~~~~~d~~d~~~v~~~~~~~~~~~g~iD   89 (251)
T 3orf_A           16 PRGSHMSKNILVLGGSGALGAEVVKFFK-SKSWNTISIDFRENPNA-----DHSFTIKDSGEEEIKSVIEKINSKSIKVD   89 (251)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCTTS-----SEEEECSCSSHHHHHHHHHHHHTTTCCEE
T ss_pred             ccccccCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCccccc-----ccceEEEeCCHHHHHHHHHHHHHHcCCCC
Confidence            3344578999999999999999999999 68999999999876532     245778999999988888754       5


Q ss_pred             ceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           95 DVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        95 ~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      .++|+++...     ......+..+.+++|+.++.++++++.....+-.+++.+++...+..                  
T Consensus        90 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------------  151 (251)
T 3orf_A           90 TFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNR------------------  151 (251)
T ss_dssp             EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------------
T ss_pred             EEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccC------------------
Confidence            5888876432     22234455568899999999999998875322234555554323211                  


Q ss_pred             CCCCCccchHHHHHHHHH-----Hhc-----CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          170 RVSKSNNFYYVLEDLLKE-----KLA-----GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e-----~~~-----~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                         ..+...|+.+|...+     +..     .. +++.+++|+.|.++.   .    ..      ..         +.  
T Consensus       152 ---~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~---~----~~------~~---------~~--  204 (251)
T 3orf_A          152 ---TSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT---N----RK------YM---------SD--  204 (251)
T ss_dssp             ---CTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH---H----HH------HC---------TT--
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc---h----hh------hc---------cc--
Confidence               111122888777655     121     23 999999999887621   0    01      00         01  


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                          ..+..+.+++|+|+++++++..+......|+.+++..++..+
T Consensus       205 ----~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~~~  246 (251)
T 3orf_A          205 ----ANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKVT  246 (251)
T ss_dssp             ----SCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETTEE
T ss_pred             ----ccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecCCccc
Confidence                111235688999999999987722222456899998776543

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.75  E-value=3.8e-17  Score=136.78  Aligned_cols=221  Identities=10%  Similarity=-0.021  Sum_probs=138.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHh-------ccCce
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLT-------LLEDV   96 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V   96 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.....  .... .++.+|++|.++++++++       .+|.+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   81 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFA-REGALVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVL   81 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            346899999999999999999999 689999999998765111  0113 788999999998888776       45678


Q ss_pred             eEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           97 THIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        97 ~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      +|.++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.                + 
T Consensus        82 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------------~-  144 (256)
T 2d1y_A           82 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE----------------Q-  144 (256)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC----------------T-
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC----------------C-
Confidence            888765322    2234445568999999999999987654  2233456665543222110                0 


Q ss_pred             CCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          171 VSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                       +..+   |+.+|...+         +. .+ +++.+++|+.+.++..       ..... ...............    
T Consensus       145 -~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~-------~~~~~-~~~~~~~~~~~~~~~----  207 (256)
T 2d1y_A          145 -ENAA---YNASKGGLVNLTRSLALDLAPLR-IRVNAVAPGAIATEAV-------LEAIA-LSPDPERTRRDWEDL----  207 (256)
T ss_dssp             -TBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHH-------HHHHC---------CHHHHTT----
T ss_pred             -CChh---HHHHHHHHHHHHHHHHHHHhhcC-eEEEEEeeCCccCchh-------hhccc-cccCCHHHHHHHHhc----
Confidence             0122   777766554         11 23 9999999999876310       00000 000000000000000    


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccH
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTW  285 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~  285 (303)
                        .....+.+++|+|+++++++..+... ..|+.|++.++...++
T Consensus       208 --~~~~~~~~~~dvA~~~~~l~s~~~~~-~~G~~~~v~gG~~~~~  249 (256)
T 2d1y_A          208 --HALRRLGKPEEVAEAVLFLASEKASF-ITGAILPVDGGMTASF  249 (256)
T ss_dssp             --STTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGBC
T ss_pred             --CCCCCCcCHHHHHHHHHHHhCchhcC-CCCCEEEECCCccccc
Confidence              12234678999999999988654321 3458999999876544

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.75  E-value=9.6e-17  Score=134.44  Aligned_cols=216  Identities=11%  Similarity=0.038  Sum_probs=138.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhcc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL-----   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~-----   93 (303)
                      ++|+||||||+|+||++++++|+ +.|++|+++ .|+.....       ....++.++.+|++|.++++++++.+     
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~-~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLA-ENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999 689998887 66654321       11346889999999999988887654     


Q ss_pred             --CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 --EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 --~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        |.++|.|+....    ..+..+....+++|+.++.++++++...  ..+..+++.+++...+...             
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~-------------  148 (258)
T 3oid_A           82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYL-------------  148 (258)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBC-------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCC-------------
Confidence              668888764322    2334455568999999999999988654  1122344444443222110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+...   |+.+|...+         +. .+ +++..++|+.+.++......   ...........  ..|    
T Consensus       149 -----~~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~--~~p----  210 (258)
T 3oid_A          149 -----ENYTT---VGVSKAALEALTRYLAVELSPKQ-IIVNAVSGGAIDTDALKHFP---NREDLLEDARQ--NTP----  210 (258)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEECCBCSGGGGGCT---THHHHHHHHHH--HCT----
T ss_pred             -----CCcHH---HHHHHHHHHHHHHHHHHHHhhcC-cEEEEEeeCCCcChhhhhcc---cCHHHHHHHHh--cCC----
Confidence                 00223   777776554         11 23 99999999999874322110   01000111111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                               ...+.+++|+|.++++++...... ..|+.+++.+|....
T Consensus       211 ---------~~r~~~~~dva~~v~~L~s~~~~~-itG~~i~vdGG~~~~  249 (258)
T 3oid_A          211 ---------AGRMVEIKDMVDTVEFLVSSKADM-IRGQTIIVDGGRSLL  249 (258)
T ss_dssp             ---------TSSCBCHHHHHHHHHHHTSSTTTT-CCSCEEEESTTGGGB
T ss_pred             ---------CCCCcCHHHHHHHHHHHhCcccCC-ccCCEEEECCCccCC
Confidence                     123668899999999988765332 456999999887544

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.75  E-value=5.5e-17  Score=136.15  Aligned_cols=220  Identities=10%  Similarity=-0.023  Sum_probs=134.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..    ....++.++.+|++|.++++++++       .+|
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id   85 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFA-KGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVD   85 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            356899999999999999999999 68999999999876532    123578899999999999888876       456


Q ss_pred             ceeEEeeccccc-----CChHHHHHHHHHHHHHHHHHHHHHhhccC------CccEEEEeecccccccccCCCcccccCC
Q 042242           95 DVTHIFWVTWAS-----QFASDMHKCCEQNKAMMCNALNAILPRAK------ALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        95 ~V~~~~~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~------~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                      .++|.++.....     .+..+..+.+++|+.++.++++++.....      ...+++.+++...+...           
T Consensus        86 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-----------  154 (261)
T 3n74_A           86 ILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR-----------  154 (261)
T ss_dssp             EEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC-----------
T ss_pred             EEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC-----------
Confidence            688887654311     23445556899999999999888776511      12345555543222000           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                             .....   |+.+|...+         +. .+ +++..++|+.+.++...........     ...     ...
T Consensus       155 -------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~~~~~~-----~~~-----~~~  213 (261)
T 3n74_A          155 -------PNLAW---YNATKGWVVSVTKALAIELAPAK-IRVVALNPVAGETPLLTTFMGEDSE-----EIR-----KKF  213 (261)
T ss_dssp             -------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEEC--------------------------------
T ss_pred             -------CCccH---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEecCcccChhhhhhcccCcH-----HHH-----HHH
Confidence                   00122   777666544         11 23 9999999999988432211000000     000     000


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccH
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTW  285 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~  285 (303)
                      ...      .....+.+++|+|.++++++...... ..|+.+++.++..++.
T Consensus       214 ~~~------~~~~~~~~~~dva~~~~~l~s~~~~~-itG~~i~vdgG~~~~~  258 (261)
T 3n74_A          214 RDS------IPMGRLLKPDDLAEAAAFLCSPQASM-ITGVALDVDGGRSIGG  258 (261)
T ss_dssp             ---------CTTSSCCCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTTTC--
T ss_pred             hhc------CCcCCCcCHHHHHHHHHHHcCCcccC-cCCcEEEecCCcccCC
Confidence            011      12234678999999999988644322 4569999999987654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.75  E-value=3.7e-17  Score=139.14  Aligned_cols=235  Identities=11%  Similarity=0.052  Sum_probs=144.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc------------c-------ccCCCeEEEEecCCCHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT------------A-------IQSSSYCFISCDLLNPLDI   86 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~------------~-------~~~~~~~~~~~D~~~~~~l   86 (303)
                      +++|+||||||+|+||++++++|+ +.|++|++++|+....            .       ....++.++.+|++|.+++
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLA-EEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence            346899999999999999999999 6899999999873210            0       1134688999999999998


Q ss_pred             HHHHh-------ccCceeEEeeccccc--CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCc
Q 042242           87 KRKLT-------LLEDVTHIFWVTWAS--QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPE  157 (303)
Q Consensus        87 ~~~~~-------~~~~V~~~~~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g  157 (303)
                      +++++       .+|.++|.|+.....  .+..+..+.+++|+.++.++++++.....+-.+++.+++...+....    
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~----  162 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAA----  162 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHH----
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccc----
Confidence            88776       566788887654322  33445556899999999999999987633334556655544442221    


Q ss_pred             ccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhh
Q 042242          158 EKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKH  227 (303)
Q Consensus       158 ~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  227 (303)
                         ..+..+..+.   .+...|+.+|...+         +. .+ +++..++|+.|.++.....    ...   ......
T Consensus       163 ---~~~~~~~~~~---~~~~~Y~asK~a~~~~~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~----~~~---~~~~~~  228 (287)
T 3pxx_A          163 ---QPPGAGGPQG---PGGAGYSYAKQLVDSYTLQLAAQLAPQS-IRANVIHPTNVNTDMLNSA----PMY---RQFRPD  228 (287)
T ss_dssp             ---CCC-----CH---HHHHHHHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEESSBSSTTTSSH----HHH---HHHCTT
T ss_pred             ---ccccccccCC---CccchHHHHHHHHHHHHHHHHHHHhhcC-cEEEEEecCcccccccccc----chh---hhhccc
Confidence               1112222111   11223777776554         12 24 9999999999998532211    000   000000


Q ss_pred             CCCcee------eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          228 LNLPFV------FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       228 ~~~~~~------~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      ...+..      .....    .....+.+++|+|.++++++...... ..|+.+++.+|..++
T Consensus       229 ~~~~~~~~~~~~~~~~~----~~~~~~~~p~dva~~v~fL~s~~a~~-itG~~i~vdGG~~~~  286 (287)
T 3pxx_A          229 LEAPSRADALLAFPAMQ----AMPTPYVEASDISNAVCFLASDESRY-VTGLQFKVDAGAMLK  286 (287)
T ss_dssp             SSSCCHHHHHHHGGGGC----SSSCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGG
T ss_pred             cccchhHHHHhhhhhhc----ccCCCCCCHHHHHhhHheecchhhcC-CCCceEeECchhhhc
Confidence            000000      00000    00023678899999999988654322 446899999986654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.75  E-value=5.5e-17  Score=136.13  Aligned_cols=215  Identities=16%  Similarity=0.076  Sum_probs=137.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec-CCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR-KPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +.+|+|+||||+|+||++++++|+ +.|++|++++| ++....     .  ...++.++.+|++|.+++.++++      
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999999 68999999999 543221     0  12457889999999998888776      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ccEEEEeecccccccccCCCcccccCC
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KA-LKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                       .+|.|+|+++....    ..+..+..+.+++|+.++.++++++....  .. ..+++.+|+...+.             
T Consensus        84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-------------  150 (261)
T 1gee_A           84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-------------  150 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-------------
Confidence             56778998765322    22344555689999999999988877651  11 34555555432220             


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                           +..+..+   |+.+|...+         +. .+ ++++++||+.++++....   ..........+..  ..|  
T Consensus       151 -----~~~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~---~~~~~~~~~~~~~--~~~--  214 (261)
T 1gee_A          151 -----PWPLFVH---YAASKGGMKLMTETLALEYAPKG-IRVNNIGPGAINTPINAE---KFADPEQRADVES--MIP--  214 (261)
T ss_dssp             -----CCTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCSGGGHH---HHHSHHHHHHHHT--TCT--
T ss_pred             -----CCCCccH---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEeeCCcCCchhhh---cccChhHHHHHHh--cCC--
Confidence                 0011223   887775443         11 23 999999999999842110   0000000011111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 +..+.+++|+|.++++++...... ..|+.+++.++..
T Consensus       215 -----------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~~  251 (261)
T 1gee_A          215 -----------MGYIGEPEEIAAVAAWLASSEASY-VTGITLFADGGMT  251 (261)
T ss_dssp             -----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             -----------CCCCcCHHHHHHHHHHHhCccccC-CCCcEEEEcCCcc
Confidence                       123668899999999988654221 3458999988754

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.75  E-value=4.7e-17  Score=136.15  Aligned_cols=221  Identities=14%  Similarity=0.091  Sum_probs=137.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---c--cCCCeEEEEecCCCHHHHHHHHh-------cc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---I--QSSSYCFISCDLLNPLDIKRKLT-------LL   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~--~~~~~~~~~~D~~~~~~l~~~~~-------~~   93 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++....   .  ...++.++.+|++|.++++++++       .+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLA-RAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            346899999999999999999999 68999999999875211   1  12457888999999999988887       66


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.++|.++....    ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+...               
T Consensus        81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------  145 (255)
T 2q2v_A           81 DILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS---------------  145 (255)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC---------------
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC---------------
Confidence            778898765322    2234455568999999888777776543  1223455555553333110               


Q ss_pred             CCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHH---H-HHhhhCCCceee
Q 042242          168 CPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVY---G-AVCKHLNLPFVF  234 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~  234 (303)
                       +  +...   |+.+|...+        ..... +++++++|+.++++...   .........   . .....    +..
T Consensus       146 -~--~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---~~~~~~~~~~~~~~~~~~~----~~~  212 (255)
T 2q2v_A          146 -T--GKAA---YVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ---KQIDDRAANGGDPLQAQHD----LLA  212 (255)
T ss_dssp             -T--TBHH---HHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH---HHHHHHHHHTCCHHHHHHH----HHT
T ss_pred             -C--Cchh---HHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh---hhcccccccccchHHHHHH----HHh
Confidence             0  0122   777666544        11122 99999999999884211   000000000   0 00000    000


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ..      .....+.+++|+|.++++++..+... ..|+.|++.++..
T Consensus       213 ~~------~p~~~~~~~~dvA~~~~~l~s~~~~~-~tG~~~~vdgG~~  253 (255)
T 2q2v_A          213 EK------QPSLAFVTPEHLGELVLFLCSEAGSQ-VRGAAWNVDGGWL  253 (255)
T ss_dssp             TT------CTTCCCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTGG
T ss_pred             cc------CCCCCCcCHHHHHHHHHHHhCCccCC-CCCCEEEECCCcc
Confidence            00      11223678999999999887654322 3358999988743

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.75  E-value=2.3e-17  Score=141.10  Aligned_cols=234  Identities=10%  Similarity=0.001  Sum_probs=148.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCC---CeEEEEecCCCHHHHHHHHh-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSS---SYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~---~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|++.+..     .  ...   ++.++.+|++|.++++++++     
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999 68999999999865432     0  112   68889999999998888776     


Q ss_pred             --ccCceeEEeecccc------cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCccccc
Q 042242           92 --LLEDVTHIFWVTWA------SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        92 --~~~~V~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                        .+|.++|.|+....      .....+..+.+++|+.++.++++++....  .+ .+++.+++...+...         
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~---------  173 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA---------  173 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC---------
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC---------
Confidence              46778888765322      22345556689999999999999887651  22 466666553332110         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHH-HHHHHhhhCCC
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLC-VYGAVCKHLNL  230 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~  230 (303)
                            .+  +...   |+.+|...+         +. .+ +++++++|+.+.++....... ..... ...........
T Consensus       174 ------~~--~~~~---Y~asKaa~~~l~~~la~el~~~g-I~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~~~~  240 (297)
T 1xhl_A          174 ------HS--GYPY---YACAKAALDQYTRCTAIDLIQHG-VRVNSVSPGAVATGFMGAMGL-PETASDKLYSFIGSRKE  240 (297)
T ss_dssp             ------CT--TSHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBCSSHHHHTTC-CHHHHHHHHHHHHHCTT
T ss_pred             ------CC--Ccch---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEeeCCCcCcccccccc-ccccccchHHHHHHHHh
Confidence                  00  0122   777666544         11 24 999999999998742110000 00000 00001110000


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc-CCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND-DISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~-~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                      .           .....+.+++|+|.++++++..+ ... ..|+.+++.++..+.+.+.+..+.+++
T Consensus       241 ~-----------~p~~r~~~pedvA~~v~~l~s~~~~~~-itG~~i~vdGG~~~~~~~~~~~~~~~~  295 (297)
T 1xhl_A          241 C-----------IPVGHCGKPEEIANIIVFLADRNLSSY-IIGQSIVADGGSTLVMGMQTHDLMSVL  295 (297)
T ss_dssp             T-----------CTTSSCBCHHHHHHHHHHHHCHHHHTT-CCSCEEEESTTGGGCCGGGGSCHHHHT
T ss_pred             c-----------CCCCCCcCHHHHHHHHHHHhCCcccCC-ccCcEEEECCCccccccccccchhhhh
Confidence            0           01123678899999999988654 211 345899999998888787666655543

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.75  E-value=1.6e-17  Score=138.22  Aligned_cols=210  Identities=15%  Similarity=0.103  Sum_probs=128.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe-cCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIA-RKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~-r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++ |++....     .  ...++.++.+|++|.++++++++       
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~-~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLG-NMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999 6899999994 5543321     0  13468889999999999888876       


Q ss_pred             ccCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeeccc-ccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMK-HYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~~  164 (303)
                      .+|.|+|+++.....    .+..+..+.+++|+.++.++++++...  ..+..+++.+++.. .|+.+            
T Consensus        83 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------  150 (247)
T 2hq1_A           83 RIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNA------------  150 (247)
T ss_dssp             CCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC------------
Confidence            567789987653211    122333458899999999988887754  11234555554421 22110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                             +..+   |+.+|...+         .. .+ +++++++|+.+.++..... .  ...  ...+..  ..|   
T Consensus       151 -------~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~-~--~~~--~~~~~~--~~~---  209 (247)
T 2hq1_A          151 -------GQAN---YAASKAGLIGFTKSIAKEFAAKG-IYCNAVAPGIIKTDMTDVL-P--DKV--KEMYLN--NIP---  209 (247)
T ss_dssp             --------CHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHTS-C--HHH--HHHHHT--TST---
T ss_pred             -------CCcH---hHHHHHHHHHHHHHHHHHHHHcC-cEEEEEEEEEEeccchhhc-c--hHH--HHHHHh--hCC---
Confidence                   0223   777776544         11 23 8999999999876321110 0  010  000111  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                +..+.+++|+|+++++++..+... ..|+.||+.++.
T Consensus       210 ----------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~  245 (247)
T 2hq1_A          210 ----------LKRFGTPEEVANVVGFLASDDSNY-ITGQVINIDGGL  245 (247)
T ss_dssp             ----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC
T ss_pred             ----------CCCCCCHHHHHHHHHHHcCccccc-ccCcEEEeCCCc
Confidence                      123668899999999887654321 235899998875

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.75  E-value=2.2e-17  Score=139.78  Aligned_cols=221  Identities=14%  Similarity=0.083  Sum_probs=141.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +++|+||||||+|+||++++++|+ +.|++|++++|++....    ....++.++.+|++|.++++++++       .+|
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  105 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLA-DEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVD  105 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            456899999999999999999999 68999999999865432    113568899999999998888776       456


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.|+....    ..+..+..+.+++|+.++..+++++...  ..+-.+++.+++...+.+                 
T Consensus       106 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~-----------------  168 (277)
T 3gvc_A          106 KLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVA-----------------  168 (277)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC-----------------
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC-----------------
Confidence            68888765332    2345555668999999999999988764  122334555544322211                 


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                          ..+...|+.+|...+         .. .+ +++.+++|+.|.++..........            . ........
T Consensus       169 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~t~~~~~~~~~~~------------~-~~~~~~~~  230 (277)
T 3gvc_A          169 ----VGGTGAYGMSKAGIIQLSRITAAELRSSG-IRSNTLLPAFVDTPMQQTAMAMFD------------G-ALGAGGAR  230 (277)
T ss_dssp             ----CTTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHHHHTCC-------------------CCHH
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHHhcccC-eEEEEEeeCCccCchHHHhhhcch------------h-hHHHHhhh
Confidence                011122777776544         11 23 999999999998742110000000            0 00000000


Q ss_pred             h-hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          239 E-IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       239 ~-~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      . .. .....+.+++|+|.++++++...... ..|+.+++.+|...+
T Consensus       231 ~~~~-~~~~r~~~pedvA~~v~~L~s~~a~~-itG~~i~vdGG~~~~  275 (277)
T 3gvc_A          231 SMIA-RLQGRMAAPEEMAGIVVFLLSDDASM-ITGTTQIADGGTIAA  275 (277)
T ss_dssp             HHHH-HHHSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGS
T ss_pred             hhhh-ccccCCCCHHHHHHHHHHHcCCccCC-ccCcEEEECCcchhc
Confidence            0 00 22334678999999999988654322 446899999886554

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.75  E-value=7.3e-17  Score=134.37  Aligned_cols=213  Identities=17%  Similarity=0.133  Sum_probs=139.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      .++|+++||||+|+||++++++|+ +.|++|++++|++....    ........+.+|++|.++++++++       .+|
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   85 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLA-ERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVD   85 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            356899999999999999999999 68999999999865432    112357789999999999888877       567


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.                
T Consensus        86 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------------  149 (248)
T 3op4_A           86 ILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGN----------------  149 (248)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------------
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC----------------
Confidence            78888765432    2244555668999999999999988653  1122345555543222110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                        .+..+   |+.+|...+         +. .+ +++..++|+.+..+.....    .... ......  ..|       
T Consensus       150 --~~~~~---Y~asK~a~~~l~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~----~~~~-~~~~~~--~~p-------  209 (248)
T 3op4_A          150 --AGQAN---YAAAKAGVIGFTKSMAREVASRG-VTVNTVAPGFIETDMTKAL----NDEQ-RTATLA--QVP-------  209 (248)
T ss_dssp             --TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBSSTTTTTS----CHHH-HHHHHH--TCT-------
T ss_pred             --CCChH---HHHHHHHHHHHHHHHHHHHHHhC-eEEEEEeeCCCCCchhhhc----CHHH-HHHHHh--cCC-------
Confidence              00223   777776443         22 23 9999999999987432211    0100 000111  111       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                            ...+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       210 ------~~r~~~p~dva~~v~~L~s~~~~~-itG~~i~vdgG~~  246 (248)
T 3op4_A          210 ------AGRLGDPREIASAVAFLASPEAAY-ITGETLHVNGGMY  246 (248)
T ss_dssp             ------TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSS
T ss_pred             ------CCCCcCHHHHHHHHHHHcCCccCC-ccCcEEEECCCee
Confidence                  122568899999999888654322 3468999988753

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.75  E-value=1.9e-17  Score=138.30  Aligned_cols=216  Identities=12%  Similarity=0.047  Sum_probs=136.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cCCCe-EEEEecCCCHHHHHHHHh------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QSSSY-CFISCDLLNPLDIKRKLT------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~-~~~~~D~~~~~~l~~~~~------~~~   94 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+...    ...++ .++.+|++|.++++++++      .+|
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id   87 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFA-ASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVS   87 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCc
Confidence            346899999999999999999999 689999999998654321    11245 788999999999888774      456


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .|+|+++....    ........+.+++|+.++.++++++...  ..+..+++.+++...+...                
T Consensus        88 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------------  151 (254)
T 2wsb_A           88 ILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN----------------  151 (254)
T ss_dssp             EEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------------
T ss_pred             EEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC----------------
Confidence            78898765332    1233444568899999988888776543  1123456665553333110                


Q ss_pred             CCCCCCccchHHHHHHHHHH---------h-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKEK---------L-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e~---------~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                      +   ..+...|+.+|...+.         . .+ ++++++||+.++++....   ....-.....+..  ..|       
T Consensus       152 ~---~~~~~~Y~~sK~a~~~~~~~~~~~~~~~g-i~v~~v~Pg~v~t~~~~~---~~~~~~~~~~~~~--~~~-------  215 (254)
T 2wsb_A          152 R---PQFASSYMASKGAVHQLTRALAAEWAGRG-VRVNALAPGYVATEMTLK---MRERPELFETWLD--MTP-------  215 (254)
T ss_dssp             S---SSCBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCSHHHHH---HHTCHHHHHHHHH--TST-------
T ss_pred             C---CCcchHHHHHHHHHHHHHHHHHHHHhhcC-eEEEEEEecccCchhhhc---cccChHHHHHHHh--cCC-------
Confidence            1   1111227777765541         1 14 999999999999842110   0000000011111  111       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                            ...+.+++|+|+++++++..+... ..|+.|++.++.
T Consensus       216 ------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gG~  251 (254)
T 2wsb_A          216 ------MGRCGEPSEIAAAALFLASPAASY-VTGAILAVDGGY  251 (254)
T ss_dssp             ------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTG
T ss_pred             ------CCCCCCHHHHHHHHHHHhCccccc-ccCCEEEECCCE
Confidence                  123678899999999988654321 345889988773

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.75  E-value=3.4e-17  Score=141.62  Aligned_cols=227  Identities=10%  Similarity=0.063  Sum_probs=147.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC----------Ccccc-------ccCCCeEEEEecCCCHHHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK----------PEITA-------IQSSSYCFISCDLLNPLDIKRK   89 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~----------~~~~~-------~~~~~~~~~~~D~~~~~~l~~~   89 (303)
                      .+|+||||||+|+||++++++|+ +.|++|++++|+          .....       ....++.++.+|++|.+++.++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFA-AEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            46899999999999999999999 689999999987          22211       1124577889999999998887


Q ss_pred             Hh-------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCC--------ccEEEEeecccccc
Q 042242           90 LT-------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKA--------LKHVSLQTGMKHYV  150 (303)
Q Consensus        90 ~~-------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--------~~~~~~~s~~~~y~  150 (303)
                      ++       .+|.++|.|+....    ..+..+..+.+++|+.++..+++++......        -.+++.+++...+.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~  184 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ  184 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence            76       45678888765432    2344555668999999999999987654110        12555555433331


Q ss_pred             cccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHH
Q 042242          151 SLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCV  220 (303)
Q Consensus       151 ~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  220 (303)
                      +..                  ....   |+.+|...+         +. .+ +++..++|+ +..+......   .... 
T Consensus       185 ~~~------------------~~~~---Y~asKaal~~l~~~la~e~~~~g-I~vn~v~PG-~~t~~~~~~~---~~~~-  237 (322)
T 3qlj_A          185 GSV------------------GQGN---YSAAKAGIATLTLVGAAEMGRYG-VTVNAIAPS-ARTRMTETVF---AEMM-  237 (322)
T ss_dssp             CBT------------------TCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEEC-TTSCCSCCSC---CC---
T ss_pred             CCC------------------CCcc---HHHHHHHHHHHHHHHHHHhcccC-cEEEEecCC-CCCccchhhh---hhhh-
Confidence            110                  0223   777766544         11 23 999999998 5442111110   0000 


Q ss_pred             HHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc-----------------
Q 042242          221 YGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF-----------------  283 (303)
Q Consensus       221 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~-----------------  283 (303)
                              ..+           .......+++|+|.++++++...... ..|+.|++.+|...                 
T Consensus       238 --------~~~-----------~~~~~~~~pedva~~v~~L~s~~~~~-itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~  297 (322)
T 3qlj_A          238 --------ATQ-----------DQDFDAMAPENVSPLVVWLGSAEARD-VTGKVFEVEGGKIRVAEGWAHGPQIDKGARW  297 (322)
T ss_dssp             -------------------------CCTTCGGGTHHHHHHHTSGGGGG-CCSCEEEEETTEEEEEECCEEEEEEECSSCC
T ss_pred             --------hcc-----------ccccCCCCHHHHHHHHHHHhCccccC-CCCCEEEECCCccccCCCcccccccCccCCC
Confidence                    000           11122457788999998887654322 34689999887754                 


Q ss_pred             cHHhhHHHHHHHhcccCC
Q 042242          284 TWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       284 s~~e~~~~i~~~~g~~~~  301 (303)
                      +..|+++.+.+.+|.+.|
T Consensus       298 ~~~el~~~~~~~~~~~~~  315 (322)
T 3qlj_A          298 DPAELGPVVADLLGKARP  315 (322)
T ss_dssp             CGGGHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHHhhccCC
Confidence            779999999999987544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.75  E-value=3.9e-17  Score=137.13  Aligned_cols=215  Identities=14%  Similarity=0.045  Sum_probs=140.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--c-CCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--Q-SSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~-~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+..+..     .  . ..++.++.+|++|.++++++++      
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFA-RAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            346899999999999999999999 68999999999875532     1  1 1468899999999999888776      


Q ss_pred             -ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.++|.|+...    ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.           .+ 
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~-  154 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI-----------TG-  154 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT-----------BC-
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc-----------CC-
Confidence             5677888876532    22244555568999999999999988765  11223455544321110           00 


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                           ..+..+   |+.+|...+         +. .+ +++.+++|+.++++.....   ...  ....+.+  ..|   
T Consensus       155 -----~~~~~~---Y~asK~a~~~l~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~---~~~--~~~~~~~--~~p---  215 (262)
T 3pk0_A          155 -----YPGWSH---YGATKAAQLGFMRTAAIELAPHK-ITVNAIMPGNIMTEGLLEN---GEE--YIASMAR--SIP---  215 (262)
T ss_dssp             -----CTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCCHHHHTT---CHH--HHHHHHT--TST---
T ss_pred             -----CCCChh---hHHHHHHHHHHHHHHHHHHHhhC-cEEEEEEeCcCcCcccccc---CHH--HHHHHHh--cCC---
Confidence                 000223   777766554         11 24 9999999999998421111   011  0111111  112   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                ...+.+++|+|.++++++...... ..|+.+++.+|..+
T Consensus       216 ----------~~r~~~p~dva~~v~~L~s~~~~~-itG~~i~vdGG~~~  253 (262)
T 3pk0_A          216 ----------AGALGTPEDIGHLAAFLATKEAGY-ITGQAIAVDGGQVL  253 (262)
T ss_dssp             ----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTTC
T ss_pred             ----------CCCCcCHHHHHHHHHHHhCccccC-CcCCEEEECCCeec
Confidence                      112568899999999988654322 44689999988754

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.75  E-value=9.6e-17  Score=133.35  Aligned_cols=212  Identities=15%  Similarity=0.100  Sum_probs=138.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-----ccCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-----LLEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-----~~~~V~~~~~  101 (303)
                      ++|+||||||+|+||++++++|++..|+.|++++|++...   ...+.++.+|++|.++++++++     .+|.++|.|+
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nAg   79 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---AENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLNAG   79 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC---CTTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc---cccceEEecCcCCHHHHHHHHHHHHhCCCCEEEECCc
Confidence            4579999999999999999999943788999999886521   3467899999999999998886     4456888876


Q ss_pred             ccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccc
Q 042242          102 VTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNF  177 (303)
Q Consensus       102 ~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~  177 (303)
                      ...    ...+..+..+.+++|+.++..+++++.....+-.+++.+++...+...                     ....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------------------~~~~  138 (244)
T 4e4y_A           80 ILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK---------------------PNSF  138 (244)
T ss_dssp             CCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC---------------------TTBH
T ss_pred             cCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC---------------------CCCc
Confidence            532    233455556689999999999999988762211345555443232110                     0112


Q ss_pred             hHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHH---------HHHHHhhhCCCceeeCCch
Q 042242          178 YYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLC---------VYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       178 ~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~  238 (303)
                      .|+.+|...+         .. .+ +++.+++|+.|.++...   .......         ......  ..         
T Consensus       139 ~Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~---------  203 (244)
T 4e4y_A          139 AYTLSKGAIAQMTKSLALDLAKYQ-IRVNTVCPGTVDTDLYR---NLIQKYANNVGISFDEAQKQEE--KE---------  203 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEESCBCCHHHH---HHHHHHHHHHTCCHHHHHHHHH--TT---------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcC-eEEEEEecCccCchhhH---HHHHhhhhhcCCCHHHHHHHHh--hc---------
Confidence            2777766554         11 23 99999999999873211   0000000         000000  01         


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                          .....+.+++|+|.++++++..+... ..|+.+++.+|..
T Consensus       204 ----~p~~r~~~p~dvA~~v~~l~s~~~~~-itG~~i~vdGG~~  242 (244)
T 4e4y_A          204 ----FPLNRIAQPQEIAELVIFLLSDKSKF-MTGGLIPIDGGYT  242 (244)
T ss_dssp             ----STTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             ----CCCCCCcCHHHHHHHHHHHhcCcccc-ccCCeEeECCCcc
Confidence                11223668899999999988755332 3468999988753

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.75  E-value=6.6e-17  Score=137.47  Aligned_cols=211  Identities=13%  Similarity=0.117  Sum_probs=135.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      ++|+|+||||+|+||+++++.|+ +.|++|++++|++.+..     .  ...++.++.+|++|.++++++++       .
T Consensus        43 ~~k~vlITGasggIG~~la~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999 68999999888754421     1  13467889999999999888875       3


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.|+|+++....    .....+..+.+++|+.++.++++++...  ..+..+++.+|+...+.+.              
T Consensus       122 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------  187 (285)
T 2c07_A          122 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN--------------  187 (285)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC--------------
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC--------------
Confidence            5668888765422    2344555568999999988888887653  1123456665553332111              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                        +  +..+   |+.+|...+         .. .+ ++++++||+.+.++.....   ....  ......  ..|     
T Consensus       188 --~--~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~---~~~~--~~~~~~--~~~-----  247 (285)
T 2c07_A          188 --V--GQAN---YSSSKAGVIGFTKSLAKELASRN-ITVNAIAPGFISSDMTDKI---SEQI--KKNIIS--NIP-----  247 (285)
T ss_dssp             --T--TCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCC-----C---CHHH--HHHHHT--TCT-----
T ss_pred             --C--CCch---HHHHHHHHHHHHHHHHHHHHHhC-cEEEEEEeCcEecCchhhc---CHHH--HHHHHh--hCC-----
Confidence              0  0223   777666443         11 24 9999999999988532211   0111  000111  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              ...+.+++|+|+++++++..+... ..|+.|++.++.
T Consensus       248 --------~~~~~~~~dvA~~~~~l~~~~~~~-~~G~~i~v~gG~  283 (285)
T 2c07_A          248 --------AGRMGTPEEVANLACFLSSDKSGY-INGRVFVIDGGL  283 (285)
T ss_dssp             --------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTS
T ss_pred             --------CCCCCCHHHHHHHHHHHhCCCcCC-CCCCEEEeCCCc
Confidence                    112668899999999988654321 345889998874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.75  E-value=5.5e-17  Score=136.82  Aligned_cols=215  Identities=13%  Similarity=0.056  Sum_probs=139.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +.+|+||||||+|+||++++++|+ +.|++|++++|+.....       ....++..+.+|++|.++++++++       
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELA-RRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999 68999999999865432       113467889999999998888776       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+-.+++.+++...+.+.          +  
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------~--  172 (270)
T 3ftp_A          105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGN----------P--  172 (270)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------T--
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC----------C--
Confidence            45678888765332    2344555668999999999999988653  1122345555543232111          0  


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                            +..+   |+.+|...+         +. .+ +++.+++|+.|..+.....    ... ....+..  ..|    
T Consensus       173 ------~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~----~~~-~~~~~~~--~~p----  231 (270)
T 3ftp_A          173 ------GQVN---YAAAKAGVAGMTRALAREIGSRG-ITVNCVAPGFIDTDMTKGL----PQE-QQTALKT--QIP----  231 (270)
T ss_dssp             ------TBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSHHHHHS----CHH-HHHHHHT--TCT----
T ss_pred             ------Cchh---HHHHHHHHHHHHHHHHHHHhhhC-eEEEEEEeCCCcCcchhhc----CHH-HHHHHHh--cCC----
Confidence                  0122   777776443         21 23 9999999999887311100    000 0000111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                               +..+.+++|+|+++++++...... ..|+.+++.+|..+|
T Consensus       232 ---------~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~~~s  270 (270)
T 3ftp_A          232 ---------LGRLGSPEDIAHAVAFLASPQAGY-ITGTTLHVNGGMFMS  270 (270)
T ss_dssp             ---------TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSSCC
T ss_pred             ---------CCCCCCHHHHHHHHHHHhCCCcCC-ccCcEEEECCCcccC
Confidence                     123668899999999888544321 346899999886543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.75  E-value=7.5e-17  Score=135.29  Aligned_cols=223  Identities=13%  Similarity=-0.002  Sum_probs=135.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-----c----CCCeEEEEecCCCHHHHHHHHh-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-----Q----SSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-----~----~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+...     .    ..++.++.+|++|.++++++++     
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELA-RNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999 689999999998654220     0    1268889999999999988887     


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       ++|.++|.++....    ..+..+..+.+++|+.++..+++++...  ..+..+++.+|+...|...            
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  151 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW------------  151 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC------------
Confidence             46778888764322    2234455568999999998887777643  1123455555554333110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+..+   |+.+|...+         +. .+ +++++++|+.++++.......   ..................
T Consensus       152 ------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~~~~~~~~  218 (260)
T 2z1n_A          152 ------QDLAL---SNIMRLPVIGVVRTLALELAPHG-VTVNAVLPSLILTDRVRSLAE---ERARRSGITVEEALKSMA  218 (260)
T ss_dssp             ------TTBHH---HHHHTHHHHHHHHHHHHHHGGGT-EEEEEEEECHHHHCCCC-------------------------
T ss_pred             ------CCCch---hHHHHHHHHHHHHHHHHHHhhhC-eEEEEEEECCcccchhhhhhh---hhhcccCCcHHHHHHHHH
Confidence                  00112   666554333         22 23 999999999999853221000   000000000000000000


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ..      ..+..+.+++|+|.++++++..+... ..|+.+++.++.
T Consensus       219 ~~------~p~~r~~~~~dva~~v~~l~s~~~~~-~tG~~i~vdGG~  258 (260)
T 2z1n_A          219 SR------IPMGRVGKPEELASVVAFLASEKASF-ITGAVIPVDGGA  258 (260)
T ss_dssp             -C------CTTSSCCCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTT
T ss_pred             hc------CCCCCccCHHHHHHHHHHHhCccccC-CCCCEEEeCCCc
Confidence            00      11123568899999999988654321 346889998874

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.75  E-value=5.1e-17  Score=135.84  Aligned_cols=213  Identities=12%  Similarity=0.046  Sum_probs=135.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+...    ...++.++.+|++|.++++++++       .+|
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD   81 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            456899999999999999999999 689999999998654321    12357888999999999888876       567


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.++....    ..+..+..+.+++|+.++..+++++.+.  ..+..+++.+++...+.+.                
T Consensus        82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------  145 (254)
T 1hdc_A           82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL----------------  145 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------------
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC----------------
Confidence            78888765322    2334455568999999998666655443  1123455555543332110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                        .+...   |+.+|...+         +. .+ ++++++||+.++++...       ..      ....... ....  
T Consensus       146 --~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~-------~~------~~~~~~~-~~~~--  203 (254)
T 1hdc_A          146 --ALTSS---YGASKWGVRGLSKLAAVELGTDR-IRVNSVHPGMTYTPMTA-------ET------GIRQGEG-NYPN--  203 (254)
T ss_dssp             --TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHH-------HH------TCCCSTT-SCTT--
T ss_pred             --CCchh---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEecccCcCcccc-------cc------chhHHHH-HHhc--
Confidence              00223   777666544         11 23 99999999999874210       00      0000000 0000  


Q ss_pred             hhhhhhcccCc-cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          239 EIWEEYCLDGS-DSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       239 ~~~~~~~~~~~-~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                          ..+..+. +++|+|+++++++..+... ..|+.+++.++..
T Consensus       204 ----~p~~~~~~~~~dvA~~v~~l~s~~~~~-~tG~~~~vdgG~~  243 (254)
T 1hdc_A          204 ----TPMGRVGNEPGEIAGAVVKLLSDTSSY-VTGAELAVDGGWT  243 (254)
T ss_dssp             ----STTSSCB-CHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             ----CCCCCCCCCHHHHHHHHHHHhCchhcC-CCCCEEEECCCcc
Confidence                1112256 8899999999988654321 3468999988864

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.74  E-value=1.5e-16  Score=134.33  Aligned_cols=218  Identities=14%  Similarity=0.057  Sum_probs=135.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|++|.++++++++       
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELA-GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCcchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999 68999999999865422       013468889999999998887774       


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.++|.++....    .....+..+.+++|+.++.++++++...  ..+..+++.+++...|...            
T Consensus        98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------  165 (273)
T 1ae1_A           98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL------------  165 (273)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC------------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC------------
Confidence             45668888765322    2234455568899999999999988643  1123455665554333111            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhh-HHHHHHHHhhhCCCcee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLG-CLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  233 (303)
                            .+..+   |+.+|...+         +. .+ +++++++|+.++++.......... .......+..  ..|  
T Consensus       166 ------~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~p--  231 (273)
T 1ae1_A          166 ------PSVSL---YSASKGAINQMTKSLACEWAKDN-IRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIV--KTP--  231 (273)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBC-------------CHHHHHHHHH--HST--
T ss_pred             ------CCcch---hHHHHHHHHHHHHHHHHHHhhcC-cEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHh--cCC--
Confidence                  00223   777766554         11 24 999999999999853221100000 0000000111  011  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 +..+.+++|+|.++++++...... ..|+.+++.++..
T Consensus       232 -----------~~r~~~p~dvA~~v~~l~s~~~~~-~tG~~i~vdGG~~  268 (273)
T 1ae1_A          232 -----------MGRAGKPQEVSALIAFLCFPAASY-ITGQIIWADGGFT  268 (273)
T ss_dssp             -----------TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             -----------CCCCcCHHHHHHHHHHHhCccccC-cCCCEEEECCCcc
Confidence                       112568899999999887644321 3468999988754

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.74  E-value=4.7e-17  Score=138.75  Aligned_cols=215  Identities=16%  Similarity=0.102  Sum_probs=138.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc--C-CCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ--S-SSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~--~-~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+|+||||||+|+||++++++|+ +.|++|++++|+.....     ..  . .++.++++|++|.++++++++.      
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFA-RAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999 68999999999876532     11  1 4688999999999988877764      


Q ss_pred             -cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 -LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 -~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       +|.++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.     .      +  
T Consensus       119 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~-----~------~--  185 (293)
T 3rih_A          119 ALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV-----T------G--  185 (293)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT-----B------B--
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc-----C------C--
Confidence             4668888765322    2244555668999999999999998532  11223444444321110     0      0  


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                          ..+..+   |+.+|...+         +. .+ +++.+++|+.|+++.....   ...  ....+.+  ..|+   
T Consensus       186 ----~~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~t~~~~~~---~~~--~~~~~~~--~~p~---  247 (293)
T 3rih_A          186 ----YPGWSH---YGASKAAQLGFMRTAAIELAPRG-VTVNAILPGNILTEGLVDM---GEE--YISGMAR--SIPM---  247 (293)
T ss_dssp             ----CTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCCHHHHHT---CHH--HHHHHHT--TSTT---
T ss_pred             ----CCCCHH---HHHHHHHHHHHHHHHHHHHhhhC-eEEEEEecCCCcCcchhhc---cHH--HHHHHHh--cCCC---
Confidence                000223   777766554         11 24 9999999999998421111   011  0011111  2221   


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                                ..+.+++|+|.++++++...... ..|+.+++.+|..++
T Consensus       248 ----------~r~~~p~dvA~~v~fL~s~~a~~-itG~~i~vdGG~~~~  285 (293)
T 3rih_A          248 ----------GMLGSPVDIGHLAAFLATDEAGY-ITGQAIVVDGGQVLP  285 (293)
T ss_dssp             ----------SSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTTCB
T ss_pred             ----------CCCCCHHHHHHHHHHHhCccccC-CCCCEEEECCCccCC
Confidence                      12457889999999888654322 446899999887653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.74  E-value=5.9e-17  Score=138.33  Aligned_cols=215  Identities=10%  Similarity=0.015  Sum_probs=139.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      ++|++|||||+|+||++++++|+ +.|++|++++|+.....         ....++.++.+|++|.++++++++      
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYA-REGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999 68999999988743211         113468889999999998877775      


Q ss_pred             -ccCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 -LLEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 -~~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       .+|.++|.++....     ..+..+..+.+++|+.++.++++++.....+-.+++.+++...|...             
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~-------------  193 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS-------------  193 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC-------------
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC-------------
Confidence             45668888765321     22445556689999999999999998763332456666554333111             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .....   |+.+|...+         +. .+ +++.+++|+.|+++........ ...      .     .....
T Consensus       194 -----~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~t~~~~~~~~~-~~~------~-----~~~~~  252 (294)
T 3r3s_A          194 -----PHLLD---YAATKAAILNYSRGLAKQVAEKG-IRVNIVAPGPIWTALQISGGQT-QDK------I-----PQFGQ  252 (294)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCSHHHHTTTSC-GGG------S-----TTTTT
T ss_pred             -----CCchH---HHHHHHHHHHHHHHHHHHHhhcC-eEEEEEecCcCccccccccCCC-HHH------H-----HHHHh
Confidence                 00222   777766544         22 24 9999999999998421000000 000      0     00000


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      .      ..+..+.+++|+|.++++++...... ..|+++++.+|..+
T Consensus       253 ~------~p~~r~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdGG~~l  293 (294)
T 3r3s_A          253 Q------TPMKRAGQPAELAPVYVYLASQESSY-VTAEVHGVCGGEHL  293 (294)
T ss_dssp             T------STTSSCBCGGGGHHHHHHHHSGGGTT-CCSCEEEESTTCCC
T ss_pred             c------CCCCCCcCHHHHHHHHHHHhCccccC-CCCCEEEECCCccC
Confidence            0      12223567788999999887654322 44689999998654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.74  E-value=9.5e-17  Score=135.20  Aligned_cols=220  Identities=12%  Similarity=0.030  Sum_probs=137.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------c--CCCeEEEEecCCCHHHHHHHHh-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------Q--SSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~--~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+...       .  ..++.++.+|++|.++++++++     
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   89 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999 689999999998654320       0  3468889999999999888876     


Q ss_pred             --ccCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           92 --LLEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 --~~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                        .+|.++|.++....     ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+.+.          
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  159 (267)
T 1iy8_A           90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI----------  159 (267)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC----------
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCC----------
Confidence              45778888764322     2234455568999999988777766543  1123455555543222110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccch-hhHH-HHHH-HHhhhCC
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNF-LGCL-CVYG-AVCKHLN  229 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~-~~~~-~~~~~~~  229 (303)
                              .+..+   |+.+|...+         +. .+ +++++++|+.++++........ .... .... .+..  .
T Consensus       160 --------~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~  225 (267)
T 1iy8_A          160 --------GNQSG---YAAAKHGVVGLTRNSAVEYGRYG-IRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQ--V  225 (267)
T ss_dssp             --------SSBHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHT--T
T ss_pred             --------CCCcc---HHHHHHHHHHHHHHHHHHHHhcC-eEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhc--c
Confidence                    00122   777666444         11 24 9999999999987421100000 0000 0000 0000  1


Q ss_pred             CceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          230 LPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       230 ~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      .|             +..+.+++|+|.++++++..+... ..|+.+++.++...+
T Consensus       226 ~p-------------~~r~~~~~dvA~~v~~l~s~~~~~-~tG~~i~vdGG~~~~  266 (267)
T 1iy8_A          226 NP-------------SKRYGEAPEIAAVVAFLLSDDASY-VNATVVPIDGGQSAA  266 (267)
T ss_dssp             CT-------------TCSCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTTTTB
T ss_pred             CC-------------CCCCcCHHHHHHHHHHHcCccccC-CCCCEEEECCCcccC
Confidence            11             123568899999999987654321 346899998886554

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.74  E-value=4e-16  Score=131.26  Aligned_cols=217  Identities=11%  Similarity=0.111  Sum_probs=140.7

Q ss_pred             CCCCEEEEEcCCCh--hHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTGL--VGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~--iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      +++|+|+||||+|+  ||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.++++++++.   
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            45789999999998  9999999999 68999999999854321        1112688999999999988887764   


Q ss_pred             ----cCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccc
Q 042242           93 ----LEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 ----~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                          +|.++|.++...        ...+.......+++|+.++..+++++.....+-.+++.+++...+...        
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--------  155 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVM--------  155 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC--------
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccC--------
Confidence                466888876432        223445555689999999999999998763333455555543232110        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                                .....   |+.+|...+         +. .+ +++..++|+.+..+........ ..  ....+..  ..
T Consensus       156 ----------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~~~~~~-~~--~~~~~~~--~~  216 (266)
T 3oig_A          156 ----------PNYNV---MGVAKASLDASVKYLAADLGKEN-IRVNSISAGPIRTLSAKGISDF-NS--ILKDIEE--RA  216 (266)
T ss_dssp             ----------TTTHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCCCSGGGTTCTTH-HH--HHHHHHH--HS
T ss_pred             ----------CCcch---hHHHHHHHHHHHHHHHHHHhhcC-cEEEEEecCcccccccccccch-HH--HHHHHHh--cC
Confidence                      00122   777766544         11 23 9999999999987432211110 01  0111111  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      |             ...+.+++|+|+++++++...... ..|+.+++.+|....
T Consensus       217 ~-------------~~~~~~p~dva~~v~~l~s~~~~~-~tG~~i~vdGG~~~~  256 (266)
T 3oig_A          217 P-------------LRRTTTPEEVGDTAAFLFSDMSRG-ITGENLHVDSGFHIT  256 (266)
T ss_dssp             T-------------TSSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGC
T ss_pred             C-------------CCCCCCHHHHHHHHHHHcCCchhc-CcCCEEEECCCeEEe
Confidence            1             112568899999999988764322 446899999886543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.74  E-value=5.5e-16  Score=131.76  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=137.4

Q ss_pred             CCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCccc---c---ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEIT---A---IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~---~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      .+|+|+||||+  |+||+++++.|+ +.|++|++++|++...   .   ....++.++.+|++|.++++++++       
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFH-REGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45899999999  999999999999 6899999999986411   0   112347789999999999888776       


Q ss_pred             ccCceeEEeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhccC-CccEEEEeecccccccccCCCcccccC
Q 042242           92 LLEDVTHIFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRAK-ALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 ~~~~V~~~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                      .+|.++|.|+....        ..+..+..+.+++|+.++.++++++..... +-.+++.+++...+...          
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~----------  168 (285)
T 2p91_A           99 SLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV----------  168 (285)
T ss_dssp             CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC----------
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC----------
Confidence            45678888765422        334455556899999999999999887621 22455555543222110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                              .+..+   |+.+|...+        ..... +++++++|+.+.++........ ...  ...+..  ..|  
T Consensus       169 --------~~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~--~~~~~~--~~p--  230 (285)
T 2p91_A          169 --------PHYNV---MGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGF-HLL--MEHTTK--VNP--  230 (285)
T ss_dssp             --------TTTTH---HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTH-HHH--HHHHHH--HST--
T ss_pred             --------CCccH---HHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccch-HHH--HHHHHh--cCC--
Confidence                    00223   777666554        11122 9999999999998532211000 110  011111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 +..+.+++|+|.++++++...... ..|+.|++.++..
T Consensus       231 -----------~~~~~~~~dva~~~~~l~s~~~~~-~tG~~~~vdgg~~  267 (285)
T 2p91_A          231 -----------FGKPITIEDVGDTAVFLCSDWARA-ITGEVVHVDNGYH  267 (285)
T ss_dssp             -----------TSSCCCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTGG
T ss_pred             -----------CCCCcCHHHHHHHHHHHcCCcccC-CCCCEEEECCCcc
Confidence                       112567899999999988643321 3458899988753

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.74  E-value=2.8e-16  Score=133.22  Aligned_cols=221  Identities=12%  Similarity=0.005  Sum_probs=138.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc-------------ccc-------ccCCCeEEEEecCCCHH
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-------------ITA-------IQSSSYCFISCDLLNPL   84 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~-------------~~~-------~~~~~~~~~~~D~~~~~   84 (303)
                      .+++|+++||||+|+||++++++|+ +.|++|++++|+..             ...       ....++.++.+|++|.+
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLA-AEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA   90 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence            3457899999999999999999999 68999999998421             110       11346788999999999


Q ss_pred             HHHHHHh-------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccc
Q 042242           85 DIKRKLT-------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYV  150 (303)
Q Consensus        85 ~l~~~~~-------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~  150 (303)
                      +++++++       .+|.++|.|+....    ..+..+..+.+++|+.++.++++++....   ..-.+++.+++...+.
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  170 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK  170 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence            9888876       45668888765432    22445555689999999999999886541   1123455555432321


Q ss_pred             cccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHH
Q 042242          151 SLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCV  220 (303)
Q Consensus       151 ~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  220 (303)
                      ..                  ....+   |+.+|...+         +. .+ +++.+++|+.+.++.....  .  ....
T Consensus       171 ~~------------------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~--~--~~~~  224 (280)
T 3pgx_A          171 AT------------------PGNGH---YSASKHGLTALTNTLAIELGEYG-IRVNSIHPYSVETPMIEPE--A--MMEI  224 (280)
T ss_dssp             CC------------------TTBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSTTCCHH--H--HHHH
T ss_pred             CC------------------CCchh---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEeeCcccCcccchh--h--hhhh
Confidence            10                  00122   777766544         11 23 9999999999998532210  0  0000


Q ss_pred             HHHHhhhCCCce-eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          221 YGAVCKHLNLPF-VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       221 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      +..... ....+ ....      ... .+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       225 ~~~~~~-~~~~~~~~~~------~~~-r~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdGG~  277 (280)
T 3pgx_A          225 FARHPS-FVHSFPPMPV------QPN-GFMTADEVADVVAWLAGDGSGT-LTGTQIPVDKGA  277 (280)
T ss_dssp             HHHCGG-GGGGSCCBTT------BCS-SCBCHHHHHHHHHHHHSGGGTT-CSSCEEEESTTG
T ss_pred             hhcCch-hhhhhhhccc------CCC-CCCCHHHHHHHHHHHhCccccC-CCCCEEEECCCc
Confidence            000000 00000 0011      111 3678999999999988655422 346899998874

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.74  E-value=3.4e-17  Score=138.67  Aligned_cols=221  Identities=10%  Similarity=0.039  Sum_probs=140.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCCCHHHHHHHHh-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      .+++|++|||||+|+||++++++|+ +.|++|++++|+.....     .   ...++.++++|++|.++++++++     
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFM-RHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999999 78999999999865421     0   13468899999999998888776     


Q ss_pred             --ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCC
Q 042242           92 --LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 --~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        .+|.++|.|+...    ...+..+..+.+++|+.++.++++++....  .+..+++.+++...+.+.           
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  171 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQ-----------  171 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTC-----------
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC-----------
Confidence              4566888876432    223445556689999999999999876431  112344554443222110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                             .....   |+.+|...+         +. .+ +++..++|+.|.++.......  ...........  ..|  
T Consensus       172 -------~~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~~~--~~p--  234 (277)
T 4fc7_A          172 -------ALQVH---AGSAKAAVDAMTRHLAVEWGPQN-IRVNSLAPGPISGTEGLRRLG--GPQASLSTKVT--ASP--  234 (277)
T ss_dssp             -------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBSSSHHHHHHS--CCHHHHHHHHH--TST--
T ss_pred             -------CCcHH---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEEECCEecchhhhhcc--CCHHHHHHHhc--cCC--
Confidence                   00122   777665443         22 24 999999999998731100000  00000001111  112  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHH
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWK  286 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~  286 (303)
                                 +..+.+++|+|.++++++...... ..|+.+++.+|..+++.
T Consensus       235 -----------~~r~~~p~dvA~~v~fL~s~~~~~-itG~~i~vdGG~~~~~~  275 (277)
T 4fc7_A          235 -----------LQRLGNKTEIAHSVLYLASPLASY-VTGAVLVADGGAWLTFP  275 (277)
T ss_dssp             -----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTHHHHCC
T ss_pred             -----------CCCCcCHHHHHHHHHHHcCCccCC-cCCCEEEECCCcccCCC
Confidence                       123568899999999988654322 45699999988765543

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.74  E-value=6.9e-17  Score=134.17  Aligned_cols=209  Identities=16%  Similarity=0.125  Sum_probs=131.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCCccccc-------cCCCeEE-EEecCCCHHHHHHHHh-------c
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKPEITAI-------QSSSYCF-ISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~~~~~~-------~~~~~~~-~~~D~~~~~~l~~~~~-------~   92 (303)
                      |+|+||||+|+||++++++|+ +.|++|+++ +|++.+...       ...++.. +.+|++|.++++++++       .
T Consensus         2 k~vlITGasggiG~~~a~~l~-~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLA-EDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999 689999998 676543210       1235666 8999999998888765       5


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.|+|+++....    ..+..+..+.+++|+.++.++++++.+.  ..+..+++.+|+...+.+.          +   
T Consensus        81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~---  147 (245)
T 2ph3_A           81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN----------P---  147 (245)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------S---
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC----------C---
Confidence            6778998765321    2234455568999999977766665543  1123456665553222110          0   


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                           +..+   |+.+|...+         .. .+ ++++++||+.++++.....   ....  ...+..  ..|     
T Consensus       148 -----~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~---~~~~--~~~~~~--~~~-----  206 (245)
T 2ph3_A          148 -----GQAN---YVASKAGLIGFTRAVAKEYAQRG-ITVNAVAPGFIETEMTERL---PQEV--KEAYLK--QIP-----  206 (245)
T ss_dssp             -----SBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHTS---CHHH--HHHHHH--TCT-----
T ss_pred             -----CCcc---hHHHHHHHHHHHHHHHHHHHHcC-eEEEEEEEEeecCcchhhc---CHHH--HHHHHh--cCC-----
Confidence                 0122   777666433         11 24 9999999999988421111   0110  001111  111     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                              ...+.+++|+|+++++++..+... ..|+.|++.++.
T Consensus       207 --------~~~~~~~~dva~~~~~l~~~~~~~-~~G~~~~v~gg~  242 (245)
T 2ph3_A          207 --------AGRFGRPEEVAEAVAFLVSEKAGY-ITGQTLCVDGGL  242 (245)
T ss_dssp             --------TCSCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTC
T ss_pred             --------CCCCcCHHHHHHHHHHHhCccccc-ccCCEEEECCCC
Confidence                    113568899999999988654321 335899998874

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.74  E-value=3.6e-16  Score=132.70  Aligned_cols=221  Identities=13%  Similarity=0.075  Sum_probs=137.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|+.....     .  ...++.++++|++|.++++++++       .
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALA-ADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999 68999999999865432     1  12468889999999998888776       4


Q ss_pred             cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.++|.|+...     ...+..+..+.+++|+.++..+++++...  ..+..+++.+++...+...             
T Consensus       106 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~-------------  172 (283)
T 3v8b_A          106 LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF-------------  172 (283)
T ss_dssp             CCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC-------------
T ss_pred             CCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC-------------
Confidence            566888876532     13344555568999999999999998543  1122344444442222000             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                         +..+...   |+.+|...+     +   .... +++..++||.+..+........ ...   . .    ..+.....
T Consensus       173 ---~~~~~~~---Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~~---~-~----~~~~~~~~  237 (283)
T 3v8b_A          173 ---TTPGATA---YTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLR-HEE---E-T----AIPVEWPK  237 (283)
T ss_dssp             ---CSTTCHH---HHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBC-CHH---H-H----SCCCBCTT
T ss_pred             ---CCCCchH---HHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccc-cch---h-h----hhhhhhhh
Confidence               0001223   787776554     1   1122 9999999999987532211000 000   0 0    00100000


Q ss_pred             chhhhhhhc--ccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          237 TREIWEEYC--LDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       237 ~~~~~~~~~--~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ..    ...  -.+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       238 ~~----~p~~~~r~~~pedvA~~v~fL~s~~a~~-itG~~i~vdGG~  279 (283)
T 3v8b_A          238 GQ----VPITDGQPGRSEDVAELIRFLVSERARH-VTGSPVWIDGGQ  279 (283)
T ss_dssp             CS----CGGGTTCCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTH
T ss_pred             hc----CccccCCCCCHHHHHHHHHHHcCccccC-CcCCEEEECcCc
Confidence            00    111  23568899999999987654322 446899998874

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.74  E-value=1.8e-17  Score=139.59  Aligned_cols=220  Identities=14%  Similarity=0.118  Sum_probs=135.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc----CCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ----SSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|++.+..     ..    ..++.++.+|++|.++++++++.     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999 68999999999865421     11    23578899999999998888765     


Q ss_pred             --cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC-----CccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 --LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-----ALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 --~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-----~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        +|.++|.++...  ...++  +.+++|+.++..+...+.+...     +..+++.+++...|...             
T Consensus        85 g~id~lv~~Ag~~~--~~~~~--~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  147 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--EKNWE--KTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV-------------  147 (267)
T ss_dssp             SCCCEEEECCCCCC--SSSHH--HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-------------
T ss_pred             CCCCEEEECCCCCC--hhhHH--HHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC-------------
Confidence              466888876532  22233  3789999876665555443311     13456666554333110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                         +  +...   |+.+|...+           .. .+ +++++++|+.+.++....   .... ..   ..    ....
T Consensus       148 ---~--~~~~---Y~~sK~a~~~~~~~~ala~e~~~~g-i~v~~v~Pg~v~t~~~~~---~~~~-~~---~~----~~~~  207 (267)
T 2gdz_A          148 ---A--QQPV---YCASKHGIVGFTRSAALAANLMNSG-VRLNAICPGFVNTAILES---IEKE-EN---MG----QYIE  207 (267)
T ss_dssp             ---T--TCHH---HHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEESCBSSHHHHG---GGCH-HH---HG----GGGG
T ss_pred             ---C--CCch---HHHHHHHHHHHHHHHHHHHHhccCC-cEEEEEecCcCcchhhhc---cccc-cc---cc----hhhh
Confidence               0  0122   676664332           11 23 999999999997732110   0000 00   00    0000


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhh
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEI  288 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~  288 (303)
                      ........ .....+.+++|+|.++++++..+...   |++|++.+++..++.|+
T Consensus       208 ~~~~~~~~-~~~~~~~~~~dvA~~v~~l~s~~~~~---G~~~~v~gg~~~~~~~~  258 (267)
T 2gdz_A          208 YKDHIKDM-IKYYGILDPPLIANGLITLIEDDALN---GAIMKITTSKGIHFQDY  258 (267)
T ss_dssp             GHHHHHHH-HHHHCCBCHHHHHHHHHHHHHCTTCS---SCEEEEETTTEEEECCC
T ss_pred             HHHHHHHH-hccccCCCHHHHHHHHHHHhcCcCCC---CcEEEecCCCcccccCc
Confidence            00000000 11223678999999999998776543   58999999988888775

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.74  E-value=4.1e-17  Score=137.66  Aligned_cols=217  Identities=11%  Similarity=0.080  Sum_probs=139.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +.+|++|||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|++|.++++++++       
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLA-VAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            457899999999999999999999 68999999999865432       113468889999999999888887       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.|+....    ..+..+..+.+++|+.++..+++++....  ....+++.+++...+.+.             
T Consensus       103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~-------------  169 (271)
T 4ibo_A          103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELAR-------------  169 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC-------------
T ss_pred             CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCC-------------
Confidence            45678888775432    23445556689999999999988876641  122345555442222100             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+..+   |+.+|...+         +. .+ +++..++|+.+.++....   ....-.....+..  ..|    
T Consensus       170 -----~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~---~~~~~~~~~~~~~--~~p----  231 (271)
T 4ibo_A          170 -----ATVAP---YTVAKGGIKMLTRAMAAEWAQYG-IQANAIGPGYMLTDMNQA---LIDNPEFDAWVKA--RTP----  231 (271)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSGGGHH---HHHCHHHHHHHHH--HST----
T ss_pred             -----CCchh---HHHHHHHHHHHHHHHHHHHhhhC-eEEEEEEeccEeCcchhh---cccCHHHHHHHHh--cCC----
Confidence                 01223   777766544         22 23 999999999998742110   0000000011111  112    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                               ...+.+++|+|.++++++...... ..|+.+++.+|...+
T Consensus       232 ---------~~r~~~pedva~~v~~L~s~~~~~-itG~~i~vdGG~~~~  270 (271)
T 4ibo_A          232 ---------AKRWGKPQELVGTAVFLSASASDY-VNGQIIYVDGGMLSV  270 (271)
T ss_dssp             ---------TCSCBCGGGGHHHHHHHHSGGGTT-CCSCEEEESTTGGGB
T ss_pred             ---------CCCCcCHHHHHHHHHHHhCccccC-CCCcEEEECCCeecc
Confidence                     112557788899998887654322 446899999886543

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.74  E-value=1.1e-16  Score=134.10  Aligned_cols=214  Identities=15%  Similarity=0.060  Sum_probs=136.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHh------ccCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLT------LLEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~------~~~~V~~   98 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|+..+.. ....++.++++|++|.++++++++      .+|.++|
T Consensus         7 l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv~   85 (257)
T 3tl3_A            7 IRDAVAVVTGGASGLGLATTKRLL-DAGAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVVN   85 (257)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHH-HHTCEEEEEESSCHHHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             ecCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCchHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            356899999999999999999999 68999999999765432 234578899999999999888876      5566888


Q ss_pred             Eeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhccC----------CccEEEEeecccccccccCCCcccc
Q 042242           99 IFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRAK----------ALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        99 ~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----------~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                      .++....        ..+..+..+.+++|+.++..+++++.....          .-.+++.+++...+...        
T Consensus        86 nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  157 (257)
T 3tl3_A           86 CAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ--------  157 (257)
T ss_dssp             CGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH--------
T ss_pred             CCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC--------
Confidence            8764321        134445556899999999999998876521          22345555543222110        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                                   .+...|+.+|...+         +. .+ +++..++|+.|..+.....   ....  ...+..  ..
T Consensus       158 -------------~~~~~Y~asKaa~~~~~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~---~~~~--~~~~~~--~~  216 (257)
T 3tl3_A          158 -------------IGQAAYSASKGGVVGMTLPIARDLASHR-IRVMTIAPGLFDTPLLASL---PEEA--RASLGK--QV  216 (257)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCTTC------CHHH--HHHHHH--TS
T ss_pred             -------------CCCccHHHHHHHHHHHHHHHHHHhcccC-cEEEEEEecCccChhhhhc---cHHH--HHHHHh--cC
Confidence                         01122777766443         22 23 9999999999987432211   0110  011111  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      |.  +          ..+.+++|+|.++++++.++...   |+.+++.+|..++
T Consensus       217 ~~--~----------~r~~~p~dva~~v~~l~s~~~it---G~~i~vdGG~~~~  255 (257)
T 3tl3_A          217 PH--P----------SRLGNPDEYGALAVHIIENPMLN---GEVIRLDGAIRMA  255 (257)
T ss_dssp             SS--S----------CSCBCHHHHHHHHHHHHHCTTCC---SCEEEESTTC---
T ss_pred             CC--C----------CCccCHHHHHHHHHHHhcCCCCC---CCEEEECCCccCC
Confidence            11  1          12568899999999998775443   5999999987654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.74  E-value=1.5e-16  Score=133.45  Aligned_cols=224  Identities=13%  Similarity=0.077  Sum_probs=136.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-ccc-----c---CCCeEEEEecCCCHHHHHHHHh------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-TAI-----Q---SSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-~~~-----~---~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|++.. ...     .   ..++.++.+|++|.++++++++      
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999 689999999998765 220     0   3467889999999999888776      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       .+|.++|.++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.            
T Consensus        82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  149 (260)
T 1x1t_A           82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS------------  149 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCC------------
Confidence             46778888765322    2234455568999999999999888654  1123455555543332110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                            .+..+   |+.+|...+        ..... +++++++|+.+.++......   .........    ..+-...
T Consensus       150 ------~~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~----~~~~~~~  213 (260)
T 1x1t_A          150 ------ANKSA---YVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQI---SALAEKNGV----DQETAAR  213 (260)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------
T ss_pred             ------CCCch---HHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhh---hhhccccCC----chHHHHH
Confidence                  00223   777766544        11122 99999999999885321110   000000000    0000000


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      .-.... .....+.+++|+|.++++++...... ..|+.|++.++.
T Consensus       214 ~~~~~~-~p~~~~~~p~dva~~~~~l~s~~~~~-~tG~~~~vdgG~  257 (260)
T 1x1t_A          214 ELLSEK-QPSLQFVTPEQLGGTAVFLASDAAAQ-ITGTTVSVDGGW  257 (260)
T ss_dssp             -CHHHH-CTTCCCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTG
T ss_pred             HHhhcc-CCCCCCcCHHHHHHHHHHHhChhhcC-CCCCEEEECCCc
Confidence            000000 12234678899999999988654321 346899998874

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.74  E-value=6.6e-16  Score=128.36  Aligned_cols=211  Identities=13%  Similarity=0.078  Sum_probs=137.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|++.+..  ....++.++.+|++|.++++++++.       +|.++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFA-KEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46899999999999999999999 68999999999865432  1112478899999999998887765       56788


Q ss_pred             EEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           98 HIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        98 ~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      |.++....    .....+..+.+++|+.++.++++++...  ..+..+++.+++...++.+                   
T Consensus        83 n~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-------------------  143 (245)
T 1uls_A           83 HYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNL-------------------  143 (245)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCT-------------------
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCCC-------------------
Confidence            88765322    2234445568999999999999888765  1234556666553322100                   


Q ss_pred             CCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          172 SKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      ....   |..+|...+         .. .+ +++++++|+.+..+..... .  ...  ......  ..|          
T Consensus       144 ~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~-~--~~~--~~~~~~--~~p----------  202 (245)
T 1uls_A          144 GQAN---YAASMAGVVGLTRTLALELGRWG-IRVNTLAPGFIETRMTAKV-P--EKV--REKAIA--ATP----------  202 (245)
T ss_dssp             TCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCTTTSSS-C--HHH--HHHHHH--TCT----------
T ss_pred             Cchh---HHHHHHHHHHHHHHHHHHHhHhC-eEEEEEEeCcCcCcchhhc-C--HHH--HHHHHh--hCC----------
Confidence            0122   666655433         22 24 9999999999987432211 0  110  111111  111          


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                         ...+.+++|+|.++++++..+... ..|+.+++.++..
T Consensus       203 ---~~~~~~~~dvA~~v~~l~s~~~~~-~tG~~~~vdgG~~  239 (245)
T 1uls_A          203 ---LGRAGKPLEVAYAALFLLSDESSF-ITGQVLFVDGGRT  239 (245)
T ss_dssp             ---TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             ---CCCCcCHHHHHHHHHHHhCchhcC-CcCCEEEECCCcc
Confidence               112568899999999988654322 3468899988754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.74  E-value=7.7e-17  Score=135.67  Aligned_cols=216  Identities=13%  Similarity=0.062  Sum_probs=139.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +.+|+||||||+|+||++++++|+ +.|++|++++|+.....     .   ...++.++++|++|.++++++++      
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFA-AAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999999 68999999999865432     0   23578899999999998877776      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCC
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                       .+|.++|.|+....    ..+..+..+.+++|+.++..+++++....   ..-.+++.+++...+...           
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  165 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL-----------  165 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----------
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC-----------
Confidence             56778888765432    22344555689999999999999887651   112355555543332110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                             .+...   |+.+|...+         +. .+ +++..++|+.|..+......   ........+..  ..|  
T Consensus       166 -------~~~~~---Y~asK~a~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~--~~p--  227 (266)
T 4egf_A          166 -------PDHYA---YCTSKAGLVMATKVLARELGPHG-IRANSVCPTVVLTEMGQRVW---GDEAKSAPMIA--RIP--  227 (266)
T ss_dssp             -------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCBCSHHHHHHT---CSHHHHHHHHT--TCT--
T ss_pred             -------CCChH---HHHHHHHHHHHHHHHHHHHhhhC-eEEEEEEeCCCcCchhhhhc---cChHHHHHHHh--cCC--
Confidence                   00223   777766444         22 23 99999999999874211000   00000000111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                 +..+.+++|+|.++++++...... ..|+.+++.+|..+
T Consensus       228 -----------~~r~~~p~dva~~v~~L~s~~~~~-itG~~i~vdGG~~~  265 (266)
T 4egf_A          228 -----------LGRFAVPHEVSDAVVWLASDAASM-INGVDIPVDGGYTM  265 (266)
T ss_dssp             -----------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGG
T ss_pred             -----------CCCCcCHHHHHHHHHHHhCchhcC-ccCcEEEECCCccC
Confidence                       122567899999999988654322 45689999988543

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.73  E-value=1.3e-17  Score=134.89  Aligned_cols=181  Identities=14%  Similarity=0.030  Sum_probs=122.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc---cCCCeEEEEecCCCHHHHHHHHh---ccCceeEEeec
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI---QSSSYCFISCDLLNPLDIKRKLT---LLEDVTHIFWV  102 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~l~~~~~---~~~~V~~~~~~  102 (303)
                      |+|+||||+|+||++++++|+ +.  +|++++|++.+...   .... +++.+|++|.+++.++++   ++|.|+|+++.
T Consensus         1 k~vlVtGasg~iG~~la~~l~-~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   76 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALK-GH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGK   76 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTT-TS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHH-hC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            589999999999999999998 44  99999998654321   0112 788899999999999998   67889999765


Q ss_pred             cccc----CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242          103 TWAS----QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus       103 ~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      ....    .+..+..+.+++|+.++.++++++++.  +..+++++|+...|...                  .+..+   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~sS~~~~~~~------------------~~~~~---  133 (207)
T 2yut_A           77 AGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ--KGARAVFFGAYPRYVQV------------------PGFAA---  133 (207)
T ss_dssp             CCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE--EEEEEEEECCCHHHHSS------------------TTBHH---
T ss_pred             CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc--CCcEEEEEcChhhccCC------------------CCcch---
Confidence            4321    133344458999999999999999543  23456665554343111                  01223   


Q ss_pred             HHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          179 YVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       179 y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                      |+.+|...+     +.   ... ++++++||+.++++..  .     .          .+             ..+..++
T Consensus       134 Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~--~-----~----------~~-------------~~~~~~~  183 (207)
T 2yut_A          134 YAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW--A-----P----------LG-------------GPPKGAL  183 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG--G-----G----------GT-------------SCCTTCB
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCc--c-----c----------cC-------------CCCCCCC
Confidence            777666544     11   112 9999999999998420  0     0          01             1123477


Q ss_pred             cHHHHHHHHHHHhcCcC
Q 042242          250 DSRLVAEQHIWVATNDD  266 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~  266 (303)
                      +++|+|++++.++..+.
T Consensus       184 ~~~dva~~~~~~~~~~~  200 (207)
T 2yut_A          184 SPEEAARKVLEGLFREP  200 (207)
T ss_dssp             CHHHHHHHHHHHHC--C
T ss_pred             CHHHHHHHHHHHHhCCC
Confidence            89999999999987764

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.73  E-value=9.3e-17  Score=133.60  Aligned_cols=211  Identities=14%  Similarity=0.120  Sum_probs=134.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec-CCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR-KPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++| ++.+..       ....++.++.+|++|.++++++++       
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLA-KQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999 68999999999 443221       013468889999999999888876       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.++....    ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+.+.             
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  148 (246)
T 2uvd_A           82 QVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGN-------------  148 (246)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCC-------------
Confidence            46778888765322    2234455568999999988887776543  1123455555543232110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +  +...   |+.+|...+         .. .+ +++++++|+.+.++..... .  ...  ...+..  ..|    
T Consensus       149 ---~--~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~-~--~~~--~~~~~~--~~p----  208 (246)
T 2uvd_A          149 ---P--GQAN---YVAAKAGVIGLTKTSAKELASRN-ITVNAIAPGFIATDMTDVL-D--ENI--KAEMLK--LIP----  208 (246)
T ss_dssp             ---T--TBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBGGGCSSCC-C--TTH--HHHHHH--TCT----
T ss_pred             ---C--CCch---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEEeccccCcchhhc-C--HHH--HHHHHh--cCC----
Confidence               0  0122   777665443         11 23 9999999999987532211 0  010  000111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               ...+.+++|+|.++++++..+... ..|+.+++.++.
T Consensus       209 ---------~~~~~~~~dvA~~~~~l~s~~~~~-~tG~~~~vdgG~  244 (246)
T 2uvd_A          209 ---------AAQFGEAQDIANAVTFFASDQSKY-ITGQTLNVDGGM  244 (246)
T ss_dssp             ---------TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTS
T ss_pred             ---------CCCCcCHHHHHHHHHHHcCchhcC-CCCCEEEECcCc
Confidence                     112668899999999988654321 345889988874

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.73  E-value=4.5e-16  Score=129.53  Aligned_cols=211  Identities=14%  Similarity=0.089  Sum_probs=134.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      .+++|+|+||||+|+||++++++|+ +.|++|++++|++.+..    .+..+.+|++|.++++++++.       +|.++
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHRGSGAPK----GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSSCCCT----TSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEE
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHHHH----HhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3457899999999999999999999 68999999999875432    223478999999988887764       46788


Q ss_pred             EEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           98 HIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        98 ~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      |.++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.                +  
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------~--  148 (247)
T 1uzm_A           87 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI----------------G--  148 (247)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------------
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCC----------------C--
Confidence            88765321    2344555568999999999999988754  1223455555543222100                0  


Q ss_pred             CCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          172 SKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      +...   |+.+|...+         .. .+ +++++++|+.+.++....   ....  .......  ..|          
T Consensus       149 ~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~---~~~~--~~~~~~~--~~p----------  207 (247)
T 1uzm_A          149 NQAN---YAASKAGVIGMARSIARELSKAN-VTANVVAPGYIDTDMTRA---LDER--IQQGALQ--FIP----------  207 (247)
T ss_dssp             CCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHH---SCHH--HHHHHGG--GCT----------
T ss_pred             CChh---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEEeCCCcccchhh---cCHH--HHHHHHh--cCC----------
Confidence            0122   777766443         11 24 999999999997631100   0000  0000110  011          


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                         ...+.+++|+|.++++++..+... ..|+.+++.++..+
T Consensus       208 ---~~~~~~~~dvA~~~~~l~s~~~~~-~~G~~i~vdgG~~~  245 (247)
T 1uzm_A          208 ---AKRVGTPAEVAGVVSFLASEDASY-ISGAVIPVDGGMGM  245 (247)
T ss_dssp             ---TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTTC
T ss_pred             ---CCCCcCHHHHHHHHHHHcCccccC-CcCCEEEECCCccc
Confidence               112568899999999988654321 34689999888543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.73  E-value=1.5e-16  Score=132.37  Aligned_cols=201  Identities=12%  Similarity=0.025  Sum_probs=128.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCccccc----cCCCeEEEEecCCCHHHHHHHHh---------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITAI----QSSSYCFISCDLLNPLDIKRKLT---------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~l~~~~~---------   91 (303)
                      ++|+|+||||+|+||++++++|+ +.|  ++|++++|++.+...    ...++.++.+|++|.+++.++++         
T Consensus         2 ~~k~vlItGasggiG~~la~~l~-~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLV-KDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHH-TCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHH-hcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999 678  999999998665321    13478899999999998888877         


Q ss_pred             ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--C------C-----ccEEEEeeccccccccc
Q 042242           92 LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRA--K------A-----LKHVSLQTGMKHYVSLQ  153 (303)
Q Consensus        92 ~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~------~-----~~~~~~~s~~~~y~~~~  153 (303)
                      .+|.|+|+++...     ......+..+.+++|+.++.++++++....  .      .     ..+++.+++...+... 
T Consensus        81 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-  159 (250)
T 1yo6_A           81 GLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD-  159 (250)
T ss_dssp             CCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT-
T ss_pred             CCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCC-
Confidence            6777999876543     223345555689999999999998877541  1      1     3466666654333111 


Q ss_pred             CCCcccccCCcCcCCCCCCCCccchHHHHHHHHHH-----h-----cCCcceEEecCCceeecCCCCccchhhHHHHHHH
Q 042242          154 GLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEK-----L-----AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA  223 (303)
Q Consensus       154 ~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e~-----~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  223 (303)
                               + .+..+   ..+...|+.+|...+.     .     .+ +++++++|+.+.++...       .      
T Consensus       160 ---------~-~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~-------~------  212 (250)
T 1yo6_A          160 ---------N-TSGSA---QFPVLAYRMSKAAINMFGRTLAVDLKDDN-VLVVNFCPGWVQTNLGG-------K------  212 (250)
T ss_dssp             ---------C-CSTTS---SSCBHHHHHHHHHHHHHHHHHHHHTGGGT-CEEEEEECCCC--------------------
T ss_pred             ---------c-ccccc---cCCccHHHHHHHHHHHHHHHHHHHhccCC-eEEEEEcCCceecCCCC-------C------
Confidence                     0 00111   1122237877765541     1     13 99999999988763110       0      


Q ss_pred             HhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeec
Q 042242          224 VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAIN  279 (303)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~  279 (303)
                            .                ...+++++|+++++++..+... ..|..+.+.+
T Consensus       213 ------~----------------~~~~~~~~a~~~~~~~~~~~~~-~~G~~~~~~g  245 (250)
T 1yo6_A          213 ------N----------------AALTVEQSTAELISSFNKLDNS-HNGRFFMRNL  245 (250)
T ss_dssp             ----------------------------HHHHHHHHHHHTTCCGG-GTTCEEETTE
T ss_pred             ------C----------------CCCCHHHHHHHHHHHHhccccc-CCCeEEEECC
Confidence                  0                1346788999999988766432 2345555443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.73  E-value=2.2e-16  Score=133.65  Aligned_cols=215  Identities=15%  Similarity=0.099  Sum_probs=137.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++....     .  ...++.++.+|++|.++++++++       
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            346899999999999999999999 68999999999865422     1  13467889999999999888776       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--c--CCccEEEEeecccccccccCCCcccccCC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--A--KALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                      .+|.++|.++....    .....+..+.+++|+.++.++++++...  .  .+..+++.+++...+.+.           
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~-----------  167 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV-----------  167 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCC-----------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCC-----------
Confidence            46678888765322    2234445568999999999999987654  1  123455555543222100           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHH--------HH-HHHHh
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCL--------CV-YGAVC  225 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~--------~~-~~~~~  225 (303)
                             .+..+   |+.+|...+        ..... +++++++|+.+.++...   ......        .. ...+.
T Consensus       168 -------~~~~~---Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---~~~~~~~~~~~~~~~~~~~~~~  234 (277)
T 2rhc_B          168 -------VHAAP---YSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA---SVREHYSDIWEVSTEEAFDRIT  234 (277)
T ss_dssp             -------TTCHH---HHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHH---HHHHHHHHHHTCCHHHHHHHHH
T ss_pred             -------CCCcc---HHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhh---hhhhhcccccccchHHHHHHHH
Confidence                   00223   777666443        11223 99999999999874211   000000        00 00000


Q ss_pred             hhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          226 KHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      .  .             ..+..+.+++|+|+++++++..+... ..|+.|++.++.
T Consensus       235 ~--~-------------~p~~r~~~~~dvA~~v~~l~s~~~~~-~tG~~~~vdGG~  274 (277)
T 2rhc_B          235 A--R-------------VPIGRYVQPSEVAEMVAYLIGPGAAA-VTAQALNVCGGL  274 (277)
T ss_dssp             H--H-------------STTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC
T ss_pred             h--c-------------CCCCCCcCHHHHHHHHHHHhCchhcC-CCCcEEEECCCc
Confidence            0  0             11223678999999999988654321 346899998874

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.73  E-value=2.3e-16  Score=132.66  Aligned_cols=202  Identities=12%  Similarity=0.081  Sum_probs=130.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHh-------ccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLT-------LLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V   96 (303)
                      .+++|+||||||+|+||++++++|+ +.|++|++++|+..... ....++.++.+|++|.++++++++       .+|.+
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFS-EEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            3467899999999999999999999 68999999999876543 233578899999999999888776       45668


Q ss_pred             eEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           97 THIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        97 ~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      +|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...                  
T Consensus        92 vnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~------------------  153 (266)
T 3p19_A           92 VNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF------------------  153 (266)
T ss_dssp             EECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------------
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC------------------
Confidence            888765322    2234455568999999999988877643  1122355555543232110                  


Q ss_pred             CCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          171 VSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                      .+...   |+.+|...+         +. .+ +++.+++|+.|.++.......  ....  .....   .          
T Consensus       154 ~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~~~--~~~~--~~~~~---~----------  212 (266)
T 3p19_A          154 PDHAA---YCGTKFAVHAISENVREEVAASN-VRVMTIAPSAVKTELLSHTTS--QQIK--DGYDA---W----------  212 (266)
T ss_dssp             TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBSSSGGGGCSC--HHHH--HHHHH---H----------
T ss_pred             CCCch---HHHHHHHHHHHHHHHHHHhcccC-cEEEEEeeCccccchhhcccc--hhhh--HHHHh---h----------
Confidence            00122   777666544         22 23 999999999998743221110  0000  00000   0          


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                      . ..+..+.+++|+|+++++++..+..
T Consensus       213 ~-~~~~r~~~pedvA~av~~l~~~~~~  238 (266)
T 3p19_A          213 R-VDMGGVLAADDVARAVLFAYQQPQN  238 (266)
T ss_dssp             H-HHTTCCBCHHHHHHHHHHHHHSCTT
T ss_pred             c-ccccCCCCHHHHHHHHHHHHcCCCC
Confidence            0 1222367889999999999988754

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.73  E-value=1.5e-16  Score=132.15  Aligned_cols=204  Identities=12%  Similarity=0.031  Sum_probs=134.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-------eEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-------KVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-   91 (303)
                      ++|+|+||||+|+||++++++|+ +.|+       +|++++|++....     .  ...++.++.+|++|.+++.++++ 
T Consensus         1 ~~k~vlITGasggiG~~la~~l~-~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            1 MKHILLITGAGKGIGRAIALEFA-RAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHH-HHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHH
Confidence            35789999999999999999999 5788       9999999865422     1  13457889999999999888876 


Q ss_pred             ------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCccc
Q 042242           92 ------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEK  159 (303)
Q Consensus        92 ------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~  159 (303)
                            .+|.|+|+++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+|+...|...       
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------  152 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF-------  152 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCC-------
Confidence                  46778898765322    2234455568999999999999988653  1123456665553333110       


Q ss_pred             ccCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          160 QVRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       160 ~~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                                 .+..+   |+.+|...+        ..... ++++++||+.++++.....     .           ..
T Consensus       153 -----------~~~~~---Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-----~-----------~~  202 (244)
T 2bd0_A          153 -----------RHSSI---YCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV-----D-----------DE  202 (244)
T ss_dssp             -----------TTCHH---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC-----C-----------ST
T ss_pred             -----------CCCch---hHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc-----c-----------cc
Confidence                       01223   777766544        11223 9999999999998532110     0           00


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      .       .      ..+.+++|+|+++++++..+... ..|+++...+++.
T Consensus       203 ~-------~------~~~~~~~dva~~~~~l~~~~~~~-~~g~~~~~~~~~~  240 (244)
T 2bd0_A          203 M-------Q------ALMMMPEDIAAPVVQAYLQPSRT-VVEEIILRPTSGD  240 (244)
T ss_dssp             T-------G------GGSBCHHHHHHHHHHHHTSCTTE-EEEEEEEEETTCC
T ss_pred             c-------c------ccCCCHHHHHHHHHHHHhCCccc-cchheEEeccccc
Confidence            0       0      12678899999999998765432 2234554445443

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.73  E-value=1.1e-16  Score=135.37  Aligned_cols=211  Identities=14%  Similarity=0.088  Sum_probs=135.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec-CCcccc-----c--c-CCCeEEEEecCCCH----HHHHHHHh-
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR-KPEITA-----I--Q-SSSYCFISCDLLNP----LDIKRKLT-   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~~~-----~--~-~~~~~~~~~D~~~~----~~l~~~~~-   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++| ++....     .  . ..++.++.+|++|.    ++++++++ 
T Consensus         9 ~~~k~~lVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A            9 SECPAAVITGGARRIGHSIAVRLH-QQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             --CCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence            346899999999999999999999 68999999999 544321     0  0 34688899999999    88887776 


Q ss_pred             ------ccCceeEEeeccccc----CCh-----------HHHHHHHHHHHHHHHHHHHHHhhcc-CCc------cEEEEe
Q 042242           92 ------LLEDVTHIFWVTWAS----QFA-----------SDMHKCCEQNKAMMCNALNAILPRA-KAL------KHVSLQ  143 (303)
Q Consensus        92 ------~~~~V~~~~~~~~~~----~~~-----------~~~~~~~~~n~~~~~~ll~~~~~~~-~~~------~~~~~~  143 (303)
                            .+|.++|.|+.....    ...           .+..+.+++|+.++.++++++.... ...      .+++.+
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                  467788887653221    122           4445689999999999999988752 112      455555


Q ss_pred             ecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccc
Q 042242          144 TGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYN  213 (303)
Q Consensus       144 s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~  213 (303)
                      ++...|...                  .+...   |+.+|...+         +. .+ +++++++|+.++++ .  ...
T Consensus       168 sS~~~~~~~------------------~~~~~---Y~asK~a~~~l~~~la~e~~~~g-i~v~~v~PG~v~t~-~--~~~  222 (276)
T 1mxh_A          168 CDAMTDLPL------------------PGFCV---YTMAKHALGGLTRAAALELAPRH-IRVNAVAPGLSLLP-P--AMP  222 (276)
T ss_dssp             CCGGGGSCC------------------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSBSCC-S--SSC
T ss_pred             CchhhcCCC------------------CCCee---hHHHHHHHHHHHHHHHHHHhhcC-eEEEEEecCcccCC-c--cCC
Confidence            553333110                  00122   777766554         11 24 99999999999986 2  111


Q ss_pred             hhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          214 FLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                        ...  ...+..  ..|.   +      +   .+.+++|+|.++++++...... ..|+.|++.++.
T Consensus       223 --~~~--~~~~~~--~~p~---~------r---~~~~~~dva~~v~~l~s~~~~~-~tG~~~~vdgG~  271 (276)
T 1mxh_A          223 --QET--QEEYRR--KVPL---G------Q---SEASAAQIADAIAFLVSKDAGY-ITGTTLKVDGGL  271 (276)
T ss_dssp             --HHH--HHHHHT--TCTT---T------S---CCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTG
T ss_pred             --HHH--HHHHHh--cCCC---C------C---CCCCHHHHHHHHHHHhCccccC-ccCcEEEECCch
Confidence              111  011111  1111   1      1   1567899999999988654321 345899998874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.73  E-value=1.9e-16  Score=134.28  Aligned_cols=216  Identities=13%  Similarity=0.085  Sum_probs=132.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      .++|++|||||+|+||++++++|+ +.|++|++++|+.....        ....++.++++|++|.++++++++      
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALA-ASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHH-HCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            346899999999999999999999 68999999997543311        113468899999999998888776      


Q ss_pred             -ccCceeEEeeccc------ccCChHHHHHHHHHHHHHHHHHHHHHhhccC-----CccEEEEeecccccccccCCCccc
Q 042242           92 -LLEDVTHIFWVTW------ASQFASDMHKCCEQNKAMMCNALNAILPRAK-----ALKHVSLQTGMKHYVSLQGLPEEK  159 (303)
Q Consensus        92 -~~~~V~~~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-----~~~~~~~~s~~~~y~~~~~~~g~~  159 (303)
                       .+|.++|.|+...      ...+..+..+.+++|+.++.++++++.....     ...+++.+++...+.+.       
T Consensus       106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~-------  178 (280)
T 4da9_A          106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS-------  178 (280)
T ss_dssp             SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_pred             CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC-------
Confidence             5677888876521      1224455556889999999999988776511     12345555543222110       


Q ss_pred             ccCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          160 QVRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       160 ~~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                                 .+..+   |+.+|...+        ..... +++..++|+.|.++......   ...   ..       
T Consensus       179 -----------~~~~~---Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---~~~---~~-------  231 (280)
T 4da9_A          179 -----------PERLD---YCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVS---GKY---DG-------  231 (280)
T ss_dssp             ------------CCHH---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------
T ss_pred             -----------CCccH---HHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcc---hhH---HH-------
Confidence                       00223   777766544        11122 99999999999874321110   000   00       


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      . ...+    . .....+.+++|+|.++++++...... ..|+.+++.+|..+
T Consensus       232 ~-~~~~----~-~p~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~~~  277 (280)
T 4da9_A          232 L-IESG----L-VPMRRWGEPEDIGNIVAGLAGGQFGF-ATGSVIQADGGLSI  277 (280)
T ss_dssp             ----------------CCBCHHHHHHHHHHHHTSTTGG-GTTCEEEESTTCC-
T ss_pred             H-Hhhc----C-CCcCCcCCHHHHHHHHHHHhCccccC-CCCCEEEECCCccc
Confidence            0 0000    0 12223668899999999988665432 34689999988653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.73  E-value=4.2e-16  Score=132.97  Aligned_cols=217  Identities=10%  Similarity=0.009  Sum_probs=139.4

Q ss_pred             CCCCEEEEEcCCCh--hHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGL--VGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~--iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|+|+||||+|+  ||++++++|+ +.|++|++++|++....      ....++.++.+|++|.++++++++      
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAR-EAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHH-HTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            45789999999988  9999999999 68999999999853211      112468889999999999888776      


Q ss_pred             -ccCceeEEeeccc--------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           92 -LLEDVTHIFWVTW--------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        92 -~~~~V~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                       .+|.++|.|+...        ...+..+..+.+++|+.++..+++++.....+-.+++.+++...+...          
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------  177 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM----------  177 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC----------
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC----------
Confidence             4566888876542        233445556689999999999999988753333355555543232110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              .....   |+.+|...+         +. .+ +++..++|+.|.++........ ..  .......  ..| 
T Consensus       178 --------~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~~~-~~--~~~~~~~--~~p-  239 (293)
T 3grk_A          178 --------PNYNV---MGVAKAALEASVKYLAVDLGPQN-IRVNAISAGPIKTLAASGIGDF-RY--ILKWNEY--NAP-  239 (293)
T ss_dssp             --------TTTTH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCCCC------CCH-HH--HHHHHHH--HST-
T ss_pred             --------CchHH---HHHHHHHHHHHHHHHHHHHhHhC-CEEEEEecCCCcchhhhcccch-HH--HHHHHHh--cCC-
Confidence                    00223   777766544         22 23 9999999999988432211110 01  0001111  111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                                  +..+.+++|+|.++++++...... ..|+.+++.+|..++
T Consensus       240 ------------~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~~~~  278 (293)
T 3grk_A          240 ------------LRRTVTIDEVGDVGLYFLSDLSRS-VTGEVHHADSGYHVI  278 (293)
T ss_dssp             ------------TSSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGGB
T ss_pred             ------------CCCCCCHHHHHHHHHHHcCccccC-CcceEEEECCCcccC
Confidence                        122567899999999988654322 456899999886543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.73  E-value=2.4e-16  Score=133.04  Aligned_cols=215  Identities=14%  Similarity=0.073  Sum_probs=138.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      .+++|+|+||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.+++.++++     
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLA-SMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            3457899999999999999999999 68999999999654321        113468899999999998888776     


Q ss_pred             --ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           92 --LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 --~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        .+|.++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.           
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  173 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGN-----------  173 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----------
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCC-----------
Confidence              45668888765432    2234555568999999999988887654  1123455555543222110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                             .+...   |+.+|...+        ..... +++..++|+.+..+......   ..      ..     ....
T Consensus       174 -------~~~~~---Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---~~------~~-----~~~~  229 (271)
T 4iin_A          174 -------MGQTN---YSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLK---DE------LK-----ADYV  229 (271)
T ss_dssp             -------TTCHH---HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC--------------------------CG
T ss_pred             -------CCchH---hHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhc---HH------HH-----HHHH
Confidence                   01223   777776554        11122 99999999999874211110   00      00     0000


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ..      .....+.+++|+|+++++++..+... ..|+.+++.+|..
T Consensus       230 ~~------~~~~~~~~p~dvA~~i~~l~s~~~~~-itG~~i~vdGG~~  270 (271)
T 4iin_A          230 KN------IPLNRLGSAKEVAEAVAFLLSDHSSY-ITGETLKVNGGLY  270 (271)
T ss_dssp             GG------CTTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSC
T ss_pred             hc------CCcCCCcCHHHHHHHHHHHhCCCcCC-CcCCEEEeCCCee
Confidence            00      22234678899999999988655322 3468999988753

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.73  E-value=3.3e-16  Score=128.32  Aligned_cols=202  Identities=15%  Similarity=0.105  Sum_probs=132.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc---cCceeEEeecc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIFWVT  103 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~~~~  103 (303)
                      ++|+++||||+|+||++++++|+ +.|++|++++|+..             +|++|.++++++++.   +|.++|.++..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~-~~G~~V~~~~r~~~-------------~D~~~~~~v~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLE-SEHTIVHVASRQTG-------------LDISDEKSVYHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHC-STTEEEEEESGGGT-------------CCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEecCCcc-------------cCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence            46899999999999999999999 78999999999853             899999999888874   45688887643


Q ss_pred             c-----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242          104 W-----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus       104 ~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      .     ...+..+..+.+++|+.++..+++++.....+-.+++.+++...+...                  .+..+   
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------------~~~~~---  129 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVV------------------ANTYV---  129 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCC------------------TTCHH---
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCC------------------CCchH---
Confidence            1     123445556689999999999999998763222345555443222110                  01223   


Q ss_pred             HHHHHHHHH-----H---hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCcc
Q 042242          179 YVLEDLLKE-----K---LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       179 y~~~k~~~e-----~---~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (303)
                      |+.+|...+     +   ... +++..++|+.+.++........ ...........  ..|             ...+.+
T Consensus       130 Y~asK~a~~~~~~~la~e~~~-i~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~--~~~-------------~~~~~~  192 (223)
T 3uce_A          130 KAAINAAIEATTKVLAKELAP-IRVNAISPGLTKTEAYKGMNAD-DRDAMYQRTQS--HLP-------------VGKVGE  192 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-SEEEEEEECSBCSGGGTTSCHH-HHHHHHHHHHH--HST-------------TCSCBC
T ss_pred             HHHHHHHHHHHHHHHHHhhcC-cEEEEEEeCCCcchhhhhcchh-hHHHHHHHHhh--cCC-------------CCCccC
Confidence            777766554     1   123 8999999999987532211100 00000111111  111             123568


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      ++|+|+++++++......   |+.+++.+|..+
T Consensus       193 ~~dvA~~~~~l~~~~~~t---G~~i~vdgG~~~  222 (223)
T 3uce_A          193 ASDIAMAYLFAIQNSYMT---GTVIDVDGGALL  222 (223)
T ss_dssp             HHHHHHHHHHHHHCTTCC---SCEEEESTTGGG
T ss_pred             HHHHHHHHHHHccCCCCC---CcEEEecCCeec
Confidence            899999999988765433   589999988654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.73  E-value=5.1e-16  Score=131.27  Aligned_cols=214  Identities=12%  Similarity=0.031  Sum_probs=138.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+||||||+|+||++++++|+ +.|++|++++|+.....       ....++.++++|++|.++++++++       
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYA-EAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999 68999999999876532       112468899999999999888887       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .+|.++|.|+....    ..+..+..+.+++|+.++..+++++....   ..-.+++.+++...+...            
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~------------  176 (276)
T 3r1i_A          109 GIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN------------  176 (276)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC------------
Confidence            56778888765432    22344555688999999999999887651   111344554443222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +   ..+...|+.+|...+         +. .+ +++..++|+.|..+.....    ...  ......  ..|   
T Consensus       177 ----~---~~~~~~Y~asKaa~~~l~~~la~e~~~~g-Irvn~v~PG~v~T~~~~~~----~~~--~~~~~~--~~p---  237 (276)
T 3r1i_A          177 ----I---PQQVSHYCTSKAAVVHLTKAMAVELAPHQ-IRVNSVSPGYIRTELVEPL----ADY--HALWEP--KIP---  237 (276)
T ss_dssp             ----C---SSCCHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCSTTTGGG----GGG--HHHHGG--GST---
T ss_pred             ----C---CCCcchHHHHHHHHHHHHHHHHHHHhhcC-cEEEEEeeCCCcCCccccc----hHH--HHHHHh--cCC---
Confidence                0   001122777766554         11 23 9999999999987432211    110  000111  111   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                +..+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       238 ----------~~r~~~pedvA~~v~fL~s~~~~~-itG~~i~vdGG~~  274 (276)
T 3r1i_A          238 ----------LGRMGRPEELTGLYLYLASAASSY-MTGSDIVIDGGYT  274 (276)
T ss_dssp             ----------TSSCBCGGGSHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             ----------CCCCcCHHHHHHHHHHHcCccccC-ccCcEEEECcCcc
Confidence                      112557788999999888654322 4568999988754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.73  E-value=9.3e-17  Score=134.40  Aligned_cols=214  Identities=15%  Similarity=0.075  Sum_probs=135.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      |+|+|+||||+|+||++++++|+ +.|++|++++|++.+..     .  ...++.++.+|++|.+++.++++       .
T Consensus         1 m~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            1 MKKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999 68999999999865422     0  12467889999999999888887       5


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KA-LKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.++|.++....    ..+..+..+.+++|+.++..+++++....  .+ ..+++.+++...+.+.             
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  146 (256)
T 1geg_A           80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN-------------  146 (256)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC-------------
Confidence            6778888764321    22344555689999999998888877641  11 2455555543222100             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHH---------HHHHhh
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCV---------YGAVCK  226 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~---------~~~~~~  226 (303)
                         +  +...   |+.+|...+         +. .+ +++++++|+.+.++...   .....+..         ...+..
T Consensus       147 ---~--~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~  214 (256)
T 1geg_A          147 ---P--ELAV---YSSSKFAVRGLTQTAARDLAPLG-ITVNGYCPGIVKTPMWA---EIDRQVSEAAGKPLGYGTAEFAK  214 (256)
T ss_dssp             ---T--TBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBSSHHHH---HHHHHHHHHHTCCTTHHHHHHHT
T ss_pred             ---C--Cchh---HHHHHHHHHHHHHHHHHHHHHcC-eEEEEEEECCCccchhh---hhhhhccccccCChHHHHHHHHh
Confidence               0  0122   777666443         11 23 99999999999873210   00000000         000000


Q ss_pred             hCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          227 HLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                        ..             ....+.+++|+|.++++++..+... ..|+.+++.++..
T Consensus       215 --~~-------------p~~r~~~p~dvA~~v~~l~s~~~~~-~tG~~i~vdGG~~  254 (256)
T 1geg_A          215 --RI-------------TLGRLSEPEDVAACVSYLASPDSDY-MTGQSLLIDGGMV  254 (256)
T ss_dssp             --TC-------------TTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESSSSS
T ss_pred             --cC-------------CCCCCcCHHHHHHHHHHHhCccccC-CCCCEEEeCCCcc
Confidence              01             1123678899999999988654321 3468999988754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.73  E-value=8.9e-16  Score=129.46  Aligned_cols=213  Identities=13%  Similarity=0.036  Sum_probs=139.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      .+++|++|||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.++++++++     
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999999 68999999987753321        113468889999999999888776     


Q ss_pred             --ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 --LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 --~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        .+|.++|.|+....    ..+..+..+.+++|+.++..+++++.....+-.+++.+++......              
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~--------------  172 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV--------------  172 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC--------------
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC--------------
Confidence              56778888765322    2244555668999999999999998876333345555544211100              


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +..+...   |+.+|...+         +. .+ +++..++|+.|.++...........      ...  ..|    
T Consensus       173 ---~~~~~~~---Y~asKaa~~~l~~~la~e~~~~g-Irvn~v~PG~v~T~~~~~~~~~~~~------~~~--~~~----  233 (271)
T 3v2g_A          173 ---PWPGISL---YSASKAALAGLTKGLARDLGPRG-ITVNIVHPGSTDTDMNPADGDHAEA------QRE--RIA----  233 (271)
T ss_dssp             ---CSTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCSSSSCSSCSSHHH------HHH--TCT----
T ss_pred             ---CCCCchH---HHHHHHHHHHHHHHHHHHhhhhC-eEEEEEecCCCcCCcccccchhHHH------HHh--cCC----
Confidence               0001223   777776544         22 23 9999999999998533221111011      111  111    


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                               ...+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       234 ---------~~r~~~pedvA~~v~fL~s~~~~~-itG~~i~vdGG~  269 (271)
T 3v2g_A          234 ---------TGSYGEPQDIAGLVAWLAGPQGKF-VTGASLTIDGGA  269 (271)
T ss_dssp             ---------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTT
T ss_pred             ---------CCCCCCHHHHHHHHHHHhCcccCC-ccCCEEEeCcCc
Confidence                     112557899999999887544322 446899998874

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.73  E-value=4.4e-16  Score=134.61  Aligned_cols=158  Identities=15%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------------ccCCCeEEEEecCCCHHHHHHHHh---
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------------IQSSSYCFISCDLLNPLDIKRKLT---   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~D~~~~~~l~~~~~---   91 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|+.....            ....++.++.+|++|.+++.++++   
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~-~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALA-GAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            45799999999999999999999 68999999998742110            113468899999999999988887   


Q ss_pred             ----ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCccccc
Q 042242           92 ----LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        92 ----~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                          .+|.++|.|+...    ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+....        
T Consensus        83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~--------  154 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTP--------  154 (324)
T ss_dssp             HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCC--------
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCC--------
Confidence                5677888877532    22244555568999999999999998543  11233455554432221110        


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeec
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~  206 (303)
                             +.  ..+   |+.+|...+         .. .+ +++++++||.|.++
T Consensus       155 -------~~--~~~---Y~asKaa~~~~~~~la~el~~~g-I~v~~v~PG~v~t~  196 (324)
T 3u9l_A          155 -------PY--LAP---YFAAKAAMDAIAVQYARELSRWG-IETSIIVPGAFTSG  196 (324)
T ss_dssp             -------SS--CHH---HHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEECCC---
T ss_pred             -------Cc--chh---HHHHHHHHHHHHHHHHHHhhhhC-cEEEEEECCccccC
Confidence                   00  123   777776554         11 23 99999999999864

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.73  E-value=6.7e-17  Score=135.98  Aligned_cols=216  Identities=13%  Similarity=0.029  Sum_probs=136.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~   98 (303)
                      +++|+||||||+|+||++++++|+ +.|++|++++|+.....    ....+.+|+.|.+++.++++       .+|.++|
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~----~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALR-AAGARVAVADRAVAGIA----ADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEECSSCCTTSC----CSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHH----hhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            356899999999999999999999 68999999999876532    22445799999988777665       4567888


Q ss_pred             Eeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           99 IFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        99 ~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      .|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+..                     
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------------------  159 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRP---------------------  159 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBC---------------------
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC---------------------
Confidence            8765432    2244555568999999999999998543  112334555544322211                     


Q ss_pred             CCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccch--hhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          173 KSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNF--LGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                      ..+...|+.+|...+         +. .+ +++.+++|+.+.++........  .........+..  .           
T Consensus       160 ~~~~~~Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~--~-----------  225 (266)
T 3uxy_A          160 GPGHALYCLTKAALASLTQCMGMDHAPQG-IRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGR--T-----------  225 (266)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHT--T-----------
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhhhcC-cEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHh--c-----------
Confidence            011122777776554         11 24 9999999999987421100000  000000000100  1           


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                        ..+..+.+++|+|.++++++...... ..|+.+++.+|..++
T Consensus       226 --~p~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~~~s  266 (266)
T 3uxy_A          226 --VPLGRIAEPEDIADVVLFLASDAARY-LCGSLVEVNGGKAVA  266 (266)
T ss_dssp             --STTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTCCCC
T ss_pred             --CCCCCCcCHHHHHHHHHHHhCchhcC-CcCCEEEECcCEeCC
Confidence              12223668899999999988765332 346899999987653

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.73  E-value=7.3e-17  Score=136.85  Aligned_cols=223  Identities=11%  Similarity=0.049  Sum_probs=139.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc--CC---CeEEEEecCCCHHHHHHHHh----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ--SS---SYCFISCDLLNPLDIKRKLT----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~--~~---~~~~~~~D~~~~~~l~~~~~----   91 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++.+..     ..  ..   ++.++.+|++|.++++++++    
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   82 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999 68999999999865432     11  12   68889999999998888776    


Q ss_pred             ---ccCceeEEeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcc
Q 042242           92 ---LLEDVTHIFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        92 ---~~~~V~~~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                         .+|.++|.|+....        ..+..+..+.+++|+.++.++++++....  .+ .+++.+++...+...      
T Consensus        83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------  155 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA------  155 (280)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC------
T ss_pred             hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC------
Confidence               45778888765422        22344555689999999999999987641  11 455555543232110      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCC-cceEEecCCceeecCCCCccchhhHHH-HHHHHhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLC-VYGAVCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~  228 (303)
                               .+  +...   |+.+|...+     +.   ... +++++++|+.+.++...... ...... .........
T Consensus       156 ---------~~--~~~~---Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~~~  220 (280)
T 1xkq_A          156 ---------QP--DFLY---YAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMG-MPDQASQKFYNFMASH  220 (280)
T ss_dssp             ---------CC--SSHH---HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTT-CCHHHHHHHHHHHHHC
T ss_pred             ---------CC--cccH---HHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccc-cccccccchHHHHHHH
Confidence                     00  0122   777766544     11   122 99999999999884211100 000000 000011100


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCc-CCcCCCCceEEeecCCCc
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND-DISSTKGQAFNAINGPRF  283 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~-~~~~~~g~~yni~~~~~~  283 (303)
                      ...           .....+.+++|+|.++++++..+ ... ..|+.+++.++..+
T Consensus       221 ~~~-----------~p~~~~~~pedvA~~v~~l~s~~~~~~-~tG~~i~vdgG~~~  264 (280)
T 1xkq_A          221 KEC-----------IPIGAAGKPEHIANIILFLADRNLSFY-ILGQSIVADGGTSL  264 (280)
T ss_dssp             TTT-----------CTTSSCBCHHHHHHHHHHHHCHHHHTT-CCSCEEEESTTGGG
T ss_pred             HcC-----------CCCCCCCCHHHHHHHHHHhcCcccccC-ccCCeEEECCCccc
Confidence            000           01123678899999999988654 211 34589999888643

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.73  E-value=5e-17  Score=135.86  Aligned_cols=212  Identities=14%  Similarity=0.152  Sum_probs=133.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc---c--c--CCCeEEEEecCCCH-HHHHHHHh-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA---I--Q--SSSYCFISCDLLNP-LDIKRKLT-----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~---~--~--~~~~~~~~~D~~~~-~~l~~~~~-----   91 (303)
                      +++|+|+||||+|+||++++++|+ +.|++ |++++|++....   .  .  ..++.++.+|++|. ++++++++     
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~-~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHH-HCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            346899999999999999999999 68997 999999864211   0  1  23678899999998 88777766     


Q ss_pred             --ccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC-C----ccEEEEeecccccccccCCCcccccCCc
Q 042242           92 --LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-A----LKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 --~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~----~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        .+|.++|.++..  ..  .+..+.+++|+.++.++++++..... +    -.+++.+|+...|...            
T Consensus        82 ~g~id~lv~~Ag~~--~~--~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  145 (254)
T 1sby_A           82 LKTVDILINGAGIL--DD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI------------  145 (254)
T ss_dssp             HSCCCEEEECCCCC--CT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------
T ss_pred             cCCCCEEEECCccC--CH--HHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC------------
Confidence              567788887653  22  22334899999999999999876521 1    2355555553333110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+..+   |+.+|...+         .. .+ +++++++|+.+.++...........            .+   
T Consensus       146 ------~~~~~---Y~~sK~a~~~~~~~la~~~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~------------~~---  200 (254)
T 1sby_A          146 ------HQVPV---YSASKAAVVSFTNSLAKLAPITG-VTAYSINPGITRTPLVHTFNSWLDV------------EP---  200 (254)
T ss_dssp             ------TTSHH---HHHHHHHHHHHHHHHHHHHHHHS-EEEEEEEECSEESHHHHSCCCGGGS------------CT---
T ss_pred             ------CCchH---HHHHHHHHHHHHHHHHHHhccCC-eEEEEEecCCccCccccccchhhhh------------hH---
Confidence                  00122   777666554         11 34 9999999999988421110000000            00   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC--CccHH
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP--RFTWK  286 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~--~~s~~  286 (303)
                        ..... .....+.+++|+|++++.++...    ..|+.|++.++.  +++|.
T Consensus       201 --~~~~~-~~~~~~~~~~dvA~~i~~~~~~~----~~G~~~~v~gG~~~~~~~~  247 (254)
T 1sby_A          201 --RVAEL-LLSHPTQTSEQCGQNFVKAIEAN----KNGAIWKLDLGTLEAIEWT  247 (254)
T ss_dssp             --THHHH-HTTSCCEEHHHHHHHHHHHHHHC----CTTCEEEEETTEEEECCCC
T ss_pred             --HHHHH-HhcCCCCCHHHHHHHHHHHHHcC----CCCCEEEEeCCceeEeccc
Confidence              00000 11112347899999999887632    335899998873  45554

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.73  E-value=4.5e-17  Score=137.05  Aligned_cols=212  Identities=13%  Similarity=0.085  Sum_probs=134.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~   95 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|+..+..    ....++.++.+|++|.++++++++       .+|.
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFH-AQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999 68999999999865432    123578899999999999888776       4667


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      ++|.|+....    ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+.+.                 
T Consensus       105 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~-----------------  167 (266)
T 3grp_A          105 LVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGN-----------------  167 (266)
T ss_dssp             EEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-----------------------
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCC-----------------
Confidence            8888765332    2234455568999999988777776543  1122345554443222110                 


Q ss_pred             CCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                          .+...|+.+|...+         +. .+ +++.+++|+.+.++.....   ...  ....+..  ..|        
T Consensus       168 ----~~~~~Y~asKaa~~~~~~~la~e~~~~g-I~vn~v~PG~v~t~~~~~~---~~~--~~~~~~~--~~p--------  227 (266)
T 3grp_A          168 ----PGQTNYCAAKAGLIGFSKALAQEIASRN-ITVNCIAPGFIKSAMTDKL---NEK--QKEAIMA--MIP--------  227 (266)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSHHHHTC---CHH--HHHHHHT--TCT--------
T ss_pred             ----CCchhHHHHHHHHHHHHHHHHHHhhhhC-cEEEEEeeCcCCCchhhcc---CHH--HHHHHHh--cCC--------
Confidence                01122777776433         22 23 9999999999987421111   001  0011111  112        


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                           +..+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       228 -----~~r~~~~edvA~~v~~L~s~~~~~-itG~~i~vdGG~~  264 (266)
T 3grp_A          228 -----MKRMGIGEEIAFATVYLASDEAAY-LTGQTLHINGGMA  264 (266)
T ss_dssp             -----TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC-
T ss_pred             -----CCCCcCHHHHHHHHHHHhCccccC-ccCCEEEECCCee
Confidence                 123567899999999988654332 3468999988753

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.73  E-value=4.8e-16  Score=130.86  Aligned_cols=213  Identities=12%  Similarity=0.066  Sum_probs=135.9

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh----
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT----   91 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~----   91 (303)
                      +..|+|+|+||||+|+||++++++|+ +.|++|++++++.....        ....++.++.+|++|.++++++++    
T Consensus        22 ~~l~~k~vlVTGas~gIG~~la~~l~-~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (267)
T 4iiu_A           22 SNAMSRSVLVTGASKGIGRAIARQLA-ADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA  100 (267)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            34577899999999999999999999 68999987765543211        123578899999999999888876    


Q ss_pred             ---ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCccccc
Q 042242           92 ---LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        92 ---~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                         .+|.++|.|+....    ..+..+..+.+++|+.++.++++++...   .....+++.+++...+.+.         
T Consensus       101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------  171 (267)
T 4iiu_A          101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGN---------  171 (267)
T ss_dssp             HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCC---------
T ss_pred             HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCC---------
Confidence               45668888765432    2244555668999999999999887421   1223355555543232111         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                               .+...   |+.+|...+         +. .+ +++.+++|+.+.++.....    ...  ......  ..|
T Consensus       172 ---------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~----~~~--~~~~~~--~~p  230 (267)
T 4iiu_A          172 ---------RGQVN---YSAAKAGIIGATKALAIELAKRK-ITVNCIAPGLIDTGMIEME----ESA--LKEAMS--MIP  230 (267)
T ss_dssp             ---------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSTTCCCC----HHH--HHHHHH--TCT
T ss_pred             ---------CCCch---hHHHHHHHHHHHHHHHHHHhhcC-eEEEEEEEeeecCCccccc----HHH--HHHHHh--cCC
Confidence                     00223   777776333         22 23 9999999999988532211    110  011111  112


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                   +..+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       231 -------------~~~~~~~edva~~~~~L~s~~~~~-itG~~i~vdGG~  266 (267)
T 4iiu_A          231 -------------MKRMGQAEEVAGLASYLMSDIAGY-VTRQVISINGGM  266 (267)
T ss_dssp             -------------TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC
T ss_pred             -------------CCCCcCHHHHHHHHHHHhCCcccC-ccCCEEEeCCCc
Confidence                         112567899999999988654322 346899998763

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.73  E-value=5.2e-16  Score=131.55  Aligned_cols=215  Identities=10%  Similarity=0.039  Sum_probs=138.8

Q ss_pred             CCCEEEEEcCCCh--hHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhcc------
Q 042242           27 AKNVAVIFGVTGL--VGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTLL------   93 (303)
Q Consensus        27 ~~~~vlVtGatG~--iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~------   93 (303)
                      ++|+|+||||+|+  ||++++++|+ +.|++|++++|+.....     ....++.++.+|++|.++++++++.+      
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMH-REGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHH-HTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH-HcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            4689999999977  9999999999 68999999999872111     12346889999999999988887654      


Q ss_pred             -CceeEEeeccccc---------CChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccC
Q 042242           94 -EDVTHIFWVTWAS---------QFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        94 -~~V~~~~~~~~~~---------~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                       |.++|.|+.....         .......+.+++|+.++.++++++... ..+-.+++.+++...+...          
T Consensus       104 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~----------  173 (280)
T 3nrc_A          104 LDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAM----------  173 (280)
T ss_dssp             CCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCC----------
T ss_pred             CCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCC----------
Confidence             5688887654321         344455568999999999999998765 2223455555543222110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              .+...   |+.+|...+         +. .+ +++.+++|+.|..+........ ..  .......  ..| 
T Consensus       174 --------~~~~~---Y~asKaal~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~~~~~~-~~--~~~~~~~--~~p-  235 (280)
T 3nrc_A          174 --------PSYNT---MGVAKASLEATVRYTALALGEDG-IKVNAVSAGPIKTLAASGISNF-KK--MLDYNAM--VSP-  235 (280)
T ss_dssp             --------TTTHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCCCCSGGGGCTTH-HH--HHHHHHH--HST-
T ss_pred             --------CCchh---hHHHHHHHHHHHHHHHHHHHHcC-cEEEEEeeccccchhhhcCcch-HH--HHHHHHh--cCC-
Confidence                    00122   777766544         11 23 9999999999988432211100 01  0011111  111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                  ...+.+++|+|+++++++...... ..|+.+++.+|..+
T Consensus       236 ------------~~~~~~pedvA~~v~~l~s~~~~~-~tG~~i~vdgG~~~  273 (280)
T 3nrc_A          236 ------------LKKNVDIMEVGNTVAFLCSDMATG-ITGEVVHVDAGYHC  273 (280)
T ss_dssp             ------------TCSCCCHHHHHHHHHHTTSGGGTT-CCSCEEEESTTGGG
T ss_pred             ------------CCCCCCHHHHHHHHHHHhCcccCC-cCCcEEEECCCccc
Confidence                        122567899999999987654322 44689999988643

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.73  E-value=1.7e-16  Score=132.58  Aligned_cols=212  Identities=15%  Similarity=0.141  Sum_probs=132.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      .+++|+|+||||+|+||++++++|+ +.|++|++++|++.+.    ..+.++.+|++|.++++++++.       +|.++
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~----~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv   92 (253)
T 2nm0_A           18 SHMSRSVLVTGGNRGIGLAIARAFA-DAGDKVAITYRSGEPP----EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLI   92 (253)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSSCCC----TTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHhh----ccceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3457899999999999999999999 6899999999986542    3478899999999998888765       46688


Q ss_pred             EEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           98 HIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        98 ~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      |.++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.                   
T Consensus        93 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-------------------  153 (253)
T 2nm0_A           93 ANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGS-------------------  153 (253)
T ss_dssp             EECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCH-------------------
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC-------------------
Confidence            88765322    1122333458999999999999887654  1123455555543222100                   


Q ss_pred             CCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          172 SKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                        .....|+.+|...+        ..... +++++++|+.+..+..... .  ...  ...+..  ..|           
T Consensus       154 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~--~~~--~~~~~~--~~p-----------  213 (253)
T 2nm0_A          154 --AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVL-T--DEQ--RANIVS--QVP-----------  213 (253)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------C--HHHHHT--TCT-----------
T ss_pred             --CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhc-C--HHH--HHHHHh--cCC-----------
Confidence              00112777666443        11222 9999999998876321110 0  000  000100  111           


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                        +..+.+++|+|.++++++..+... ..|+.+++.++..+
T Consensus       214 --~~~~~~p~dvA~~i~~l~s~~~~~-~tG~~i~vdGG~~~  251 (253)
T 2nm0_A          214 --LGRYARPEEIAATVRFLASDDASY-ITGAVIPVDGGLGM  251 (253)
T ss_dssp             --TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTTC
T ss_pred             --CCCCcCHHHHHHHHHHHhCccccC-CcCcEEEECCcccc
Confidence              112668899999999988664322 34688999887543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.73  E-value=4.1e-16  Score=129.91  Aligned_cols=215  Identities=14%  Similarity=0.090  Sum_probs=132.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC-cccc----ccCCCeEEEEecCCCHHHHHHHHh-------cc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP-EITA----IQSSSYCFISCDLLNPLDIKRKLT-------LL   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~   93 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++ ....    ....++.++++|++|.++++++++       .+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   83 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            456899999999999999999999 6899999999987 4321    113468889999999998887764       46


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.++|.++....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...|...               
T Consensus        84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------  148 (249)
T 2ew8_A           84 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI---------------  148 (249)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC---------------
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC---------------
Confidence            678888765322    2244455568999999988888886543  1123455555553333110               


Q ss_pred             CCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                         .+...   |+.+|...+         +. .+ +++++++|+.+.++.....  .....   .....  .  +..+  
T Consensus       149 ---~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~--~~~~~---~~~~~--~--~~~~--  210 (249)
T 2ew8_A          149 ---EAYTH---YISTKAANIGFTRALASDLGKDG-ITVNAIAPSLVRTATTEAS--ALSAM---FDVLP--N--MLQA--  210 (249)
T ss_dssp             ---SSCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCC-------------------------C--TTSS--
T ss_pred             ---CCchh---HHHHHHHHHHHHHHHHHHHHhcC-cEEEEEecCcCcCccchhc--cccch---hhHHH--H--hhCc--
Confidence               00222   777666544         11 24 9999999999988432100  00000   00000  0  0001  


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                             +..+.+++|+|.++++++..+... ..|+.+++.++..
T Consensus       211 -------~~~~~~p~dva~~~~~l~s~~~~~-~tG~~~~vdGG~~  247 (249)
T 2ew8_A          211 -------IPRLQVPLDLTGAAAFLASDDASF-ITGQTLAVDGGMV  247 (249)
T ss_dssp             -------SCSCCCTHHHHHHHHHHTSGGGTT-CCSCEEEESSSCC
T ss_pred             -------cCCCCCHHHHHHHHHHHcCcccCC-CCCcEEEECCCcc
Confidence                   112568899999999988654221 3468899988743

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.73  E-value=2.3e-16  Score=130.20  Aligned_cols=186  Identities=14%  Similarity=0.038  Sum_probs=119.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHh-------ccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLT-------LLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V   96 (303)
                      |+|+|+||||+|+||++++++|+ +.|++|++++|++.+..   ....++.++.+|++|.+++.++++       .+|.+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   82 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLH-AKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSAL   82 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56899999999999999999999 68999999999865432   112378899999999998888776       45668


Q ss_pred             eEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           97 THIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        97 ~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      +|+++....    .....+..+.+++|+.++..+++.+.+.  ..+..+++++|+...|..                  .
T Consensus        83 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------------~  144 (234)
T 2ehd_A           83 VNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNP------------------F  144 (234)
T ss_dssp             EECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSC------------------C
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCC------------------C
Confidence            888765322    2234455568999999998777666543  123456666655333211                  0


Q ss_pred             CCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          171 VSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                      .+..+   |+.+|...+         .. .+ ++++++||+.+..+...       .            .+    .  . 
T Consensus       145 ~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~-------~------------~~----~--~-  194 (234)
T 2ehd_A          145 KGGAA---YNASKFGLLGLAGAAMLDLREAN-VRVVNVLPGSVDTGFAG-------N------------TP----G--Q-  194 (234)
T ss_dssp             TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEECC---------------------------------------
T ss_pred             CCCch---hhHHHHHHHHHHHHHHHHHhhcC-cEEEEEEeCCCcCCccc-------c------------cc----c--c-
Confidence            01223   777776433         11 23 99999999988763110       0            00    0  0 


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                      + .    ..+++|+|+++++++..+.
T Consensus       195 ~-~----~~~~~dvA~~~~~l~~~~~  215 (234)
T 2ehd_A          195 A-W----KLKPEDVAQAVLFALEMPG  215 (234)
T ss_dssp             --------CCHHHHHHHHHHHHHSCC
T ss_pred             c-C----CCCHHHHHHHHHHHhCCCc
Confidence            0 1    3578999999999887654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.72  E-value=3.5e-16  Score=132.04  Aligned_cols=211  Identities=14%  Similarity=0.090  Sum_probs=131.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec-CCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIAR-KPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +|+||||||+|+||++++++|+ +.|++|+++.+ +.....       ....++.++.+|++|.++++++++.       
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  104 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAA-RQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR  104 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            5799999999999999999999 68999988744 433221       1134688999999999988887764       


Q ss_pred             cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhccC-----CccEEEEeecccccccccCCCcccccC
Q 042242           93 LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRAK-----ALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-----~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                      +|.++|.|+....     ..+..+..+.+++|+.++..+++++.....     +..+++.+++...+.+..         
T Consensus       105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------  175 (272)
T 4e3z_A          105 LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA---------  175 (272)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT---------
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC---------
Confidence            4668888765332     124455566899999999999988776521     234556655533331110         


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              ....+   |+.+|...+         +. .+ +++.+++|+.|.++.....  .....      .     ..
T Consensus       176 --------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~--~~~~~------~-----~~  230 (272)
T 4e3z_A          176 --------TQYVD---YAASKAAIDTFTIGLAREVAAEG-IRVNAVRPGIIETDLHASG--GLPDR------A-----RE  230 (272)
T ss_dssp             --------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBC----------------------------
T ss_pred             --------CCcch---hHHHHHHHHHHHHHHHHHHHHcC-cEEEEEecCCCcCCccccc--CChHH------H-----HH
Confidence                    00122   777766554         11 24 9999999999998532210  00000      0     00


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      ....      ..+..+.+++|+|+++++++...... ..|+.|++.+|
T Consensus       231 ~~~~------~~~~~~~~~edvA~~i~~l~s~~~~~-~tG~~i~vdgG  271 (272)
T 4e3z_A          231 MAPS------VPMQRAGMPEEVADAILYLLSPSASY-VTGSILNVSGG  271 (272)
T ss_dssp             ---C------CTTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTT
T ss_pred             Hhhc------CCcCCCcCHHHHHHHHHHHhCCcccc-ccCCEEeecCC
Confidence            1111      12223567899999999988654332 34689999876

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.72  E-value=3.4e-16  Score=131.73  Aligned_cols=217  Identities=15%  Similarity=0.057  Sum_probs=136.6

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCCCHHHHHHHHh---
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLLNPLDIKRKLT---   91 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~~~l~~~~~---   91 (303)
                      ...+++|+||||||+|+||++++++|+ +.|++|++++|++.+..     .   ...++.++.+|++|.++++++++   
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   94 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK   94 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            344567899999999999999999999 68999999999865421     0   13467888999999998888776   


Q ss_pred             ----ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeeccc-ccccccCCCcccc
Q 042242           92 ----LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMK-HYVSLQGLPEEKQ  160 (303)
Q Consensus        92 ----~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~-~y~~~~~~~g~~~  160 (303)
                          .+|.++|.++....    .....+..+.+++|+.++.++++++...  ..+..+++.+++.. .+.          
T Consensus        95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----------  164 (267)
T 1vl8_A           95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV----------  164 (267)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC----------
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc----------
Confidence                45678888765322    2233445568899999999998887653  12234555555432 110          


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                              +..+...   |+.+|...+         +. .+ +++++++|+.+.++...   .....-.....+..  ..
T Consensus       165 --------~~~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~---~~~~~~~~~~~~~~--~~  227 (267)
T 1vl8_A          165 --------TMPNISA---YAASKGGVASLTKALAKEWGRYG-IRVNVIAPGWYRTKMTE---AVFSDPEKLDYMLK--RI  227 (267)
T ss_dssp             --------CSSSCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBCSTTTH---HHHTCHHHHHHHHH--TC
T ss_pred             --------CCCCChh---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEEeccCcccccc---ccccChHHHHHHHh--hC
Confidence                    0000222   777666554         11 24 99999999999874211   00000000011111  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      |             +..+.+++|+|.++++++...... ..|+.+++.++.
T Consensus       228 p-------------~~~~~~p~dvA~~v~~l~s~~~~~-itG~~i~vdGG~  264 (267)
T 1vl8_A          228 P-------------LGRTGVPEDLKGVAVFLASEEAKY-VTGQIIFVDGGW  264 (267)
T ss_dssp             T-------------TSSCBCGGGGHHHHHHHHSGGGTT-CCSCEEEESTTG
T ss_pred             C-------------CCCCcCHHHHHHHHHHHcCccccC-CcCCeEEECCCC
Confidence            1             112567788999999888654321 345889888874

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.72  E-value=2.4e-16  Score=131.07  Aligned_cols=218  Identities=12%  Similarity=0.024  Sum_probs=137.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHh---ccCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLT---LLEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~---~~~~V~~~~  100 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+..  ....++.++.+|++|.++++++++   .+|.++|.+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~A   82 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFA-REGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECC
Confidence            356899999999999999999999 68999999999865432  112368889999999999887765   456688887


Q ss_pred             ecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC
Q 042242          101 WVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS  174 (303)
Q Consensus       101 ~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~  174 (303)
                      +....    .....+..+.+++|+.++.++++++...  ..+..+++.+++...+...                +    .
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------~----~  142 (246)
T 2ag5_A           83 GFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG----------------V----V  142 (246)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC----------------C----T
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC----------------C----C
Confidence            65332    2234445568899999999999987653  1123455555543222110                0    0


Q ss_pred             ccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccch-hhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          175 NNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNF-LGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       175 ~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      +...|+.+|...+         +. .+ ++++++||+.++++........ ...-.....+..  ..|            
T Consensus       143 ~~~~Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~~------------  207 (246)
T 2ag5_A          143 NRCVYSTTKAAVIGLTKSVAADFIQQG-IRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLK--RQK------------  207 (246)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHH--TCT------------
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhhhcC-cEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHh--cCC------------
Confidence            1122777766554         11 24 9999999999998421100000 000000001111  111            


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                       ...+.+++|+|.++++++..+... ..|+.+++.++.
T Consensus       208 -~~~~~~~~dvA~~v~~l~s~~~~~-~tG~~i~vdgG~  243 (246)
T 2ag5_A          208 -TGRFATAEEIAMLCVYLASDESAY-VTGNPVIIDGGW  243 (246)
T ss_dssp             -TSSCEEHHHHHHHHHHHHSGGGTT-CCSCEEEECTTG
T ss_pred             -CCCCCCHHHHHHHHHHHhCccccC-CCCCEEEECCCc
Confidence             112568899999999988654322 345889988874

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.72  E-value=2.3e-16  Score=132.56  Aligned_cols=220  Identities=17%  Similarity=0.132  Sum_probs=139.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +.+|++|||||+|+||++++++|+ +.|++|++++|+.....       ....++.++++|++|.++++++++       
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCA-EQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHH-HCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999999 68999999999865432       123478899999999999888776       


Q ss_pred             ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.++...     ...+..+..+.+++|+.++.++++++... ..+-.+++.+++...+...             
T Consensus        88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  154 (264)
T 3ucx_A           88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQ-------------  154 (264)
T ss_dssp             CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCC-------------
T ss_pred             CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCC-------------
Confidence            3566888875421     12334555668999999999999987754 1111355555543232110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhh------HHHHHHHHhhhCCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLG------CLCVYGAVCKHLNL  230 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~------~~~~~~~~~~~~~~  230 (303)
                           .+..+   |+.+|...+        ..... +++.+++|+.|+++..........      .-.....+..  . 
T Consensus       155 -----~~~~~---Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  223 (264)
T 3ucx_A          155 -----AKYGA---YKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAA--G-  223 (264)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHT--T-
T ss_pred             -----CccHH---HHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhc--c-
Confidence                 00122   777765444        11122 999999999998742110000000      0000000000  1 


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                  ..+..+.+++|+|.++++++...... ..|+.+++.+|..+
T Consensus       224 ------------~p~~r~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdGG~~~  263 (264)
T 3ucx_A          224 ------------SDLKRLPTEDEVASAILFMASDLASG-ITGQALDVNCGEYK  263 (264)
T ss_dssp             ------------SSSSSCCBHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSSC
T ss_pred             ------------CCcccCCCHHHHHHHHHHHcCccccC-CCCCEEEECCCccC
Confidence                        12223668899999999988654322 44689999988643

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.72  E-value=9.1e-17  Score=134.23  Aligned_cols=217  Identities=11%  Similarity=0.046  Sum_probs=137.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----cCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----QSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++.+...    ...++.++++|++|.++++++++.       +|
T Consensus         4 l~~k~vlVTGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   82 (253)
T 1hxh_A            4 LQGKVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            457899999999999999999999 689999999998654321    134688899999999998887765       36


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.++....    ..+..+..+.+++|+.++..+.+++...  ... .+++.+++...|...                
T Consensus        83 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------------  145 (253)
T 1hxh_A           83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPI----------------  145 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCC----------------
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCC----------------
Confidence            68888765322    2234455568999999888777766543  122 566666654333110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-c--CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-A--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                           .+...|+.+|...+         .. .  + ++++++||+.++++.......  ....  .....  ...   ..
T Consensus       146 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~~g-i~v~~v~Pg~v~t~~~~~~~~--~~~~--~~~~~--~~~---~~  210 (253)
T 1hxh_A          146 -----EQYAGYSASKAAVSALTRAAALSCRKQGYA-IRVNSIHPDGIYTPMMQASLP--KGVS--KEMVL--HDP---KL  210 (253)
T ss_dssp             -----TTBHHHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEESEECCHHHHHHSC--TTCC--HHHHB--CBT---TT
T ss_pred             -----CCCccHHHHHHHHHHHHHHHHHHhhhcCCC-eEEEEEEeCCccCchhhhccc--hhhh--HHHHh--hhh---cc
Confidence                 01112777666544         11 2  5 999999999999842110000  0000  00000  000   00


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                            .....+.+++|+|.++++++..+... ..|+.+++.++..
T Consensus       211 ------~p~~~~~~~~dvA~~~~~l~s~~~~~-~tG~~~~vdgG~~  249 (253)
T 1hxh_A          211 ------NRAGRAYMPERIAQLVLFLASDESSV-MSGSELHADNSIL  249 (253)
T ss_dssp             ------BTTCCEECHHHHHHHHHHHHSGGGTT-CCSCEEEESSSCT
T ss_pred             ------CccCCCCCHHHHHHHHHHHcCccccC-CCCcEEEECCCcc
Confidence                  11123568899999999988654322 3458899888753

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.72  E-value=2.7e-16  Score=131.54  Aligned_cols=216  Identities=12%  Similarity=0.143  Sum_probs=135.2

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC-cccc-------ccCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP-EITA-------IQSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      ....+|+||||||+|+||++++++|+ +.|++|++++++. ....       ....++.++.+|++|.++++++++.   
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLH-KDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA   87 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHH-HTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence            34467899999999999999999999 6899999988543 3221       1234688999999999998888764   


Q ss_pred             ----cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           93 ----LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ----~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                          +|.++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...          
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  157 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQ----------  157 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSC----------
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCC----------
Confidence                4568888765332    2344555668999999988888887553  1122345555543222110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              .+...   |+.+|...+         +. .+ +++.+++|+.+.++.....   ....  ...+..  ..| 
T Consensus       158 --------~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~---~~~~--~~~~~~--~~~-  217 (256)
T 3ezl_A          158 --------FGQTN---YSTAKAGIHGFTMSLAQEVATKG-VTVNTVSPGYIGTDMVKAI---RPDV--LEKIVA--TIP-  217 (256)
T ss_dssp             --------SCCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHTS---CHHH--HHHHHH--HST-
T ss_pred             --------CCCcc---cHHHHHHHHHHHHHHHHHHHHhC-CEEEEEEECcccCcccccc---CHHH--HHHHHh--cCC-
Confidence                    01223   787776443         11 23 9999999999987421111   0110  011111  111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                  ...+.+++|+|.++++++...... ..|+.|++.+|..+
T Consensus       218 ------------~~~~~~~~dva~~~~~l~s~~~~~-~tG~~i~vdgG~~~  255 (256)
T 3ezl_A          218 ------------VRRLGSPDEIGSIVAWLASEESGF-STGADFSLNGGLHM  255 (256)
T ss_dssp             ------------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSCC
T ss_pred             ------------CCCCcCHHHHHHHHHHHhCCcccC-CcCcEEEECCCEeC
Confidence                        122567899999999888654322 44689999988654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=5.2e-16  Score=130.07  Aligned_cols=219  Identities=15%  Similarity=0.082  Sum_probs=135.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++++.....        ....++.++.+|++|.++++++++      
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFA-QEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            457899999999999999999999 68999999865543321        113468899999999999888876      


Q ss_pred             -ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 -LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 -~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                       .+|.++|.|+...     ...+.....+.+++|+.++.++++++.....+-.+++.+++...+...             
T Consensus        85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  151 (259)
T 3edm_A           85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGG-------------  151 (259)
T ss_dssp             CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCC-------------
T ss_pred             CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCC-------------
Confidence             4566888875431     122344455689999999999999998763222345555543222000             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          ..+...   |+.+|...+         +... +++..++|+.+..+......   ..     ....     .....
T Consensus       152 ----~~~~~~---Y~asKaa~~~l~~~la~e~~~~-I~vn~v~PG~v~T~~~~~~~---~~-----~~~~-----~~~~~  210 (259)
T 3edm_A          152 ----GPGALA---YATSKGAVMTFTRGLAKEVGPK-IRVNAVCPGMISTTFHDTFT---KP-----EVRE-----RVAGA  210 (259)
T ss_dssp             ----STTCHH---HHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECCBCC-------------------------------
T ss_pred             ----CCCcHH---HHHHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCcCccccccc---Ch-----HHHH-----HHHhc
Confidence                000223   777766554         2233 89999999998874221110   00     0000     00000


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHH
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWK  286 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~  286 (303)
                            ..+..+.+++|+|.++++++...... ..|+.|++.++...+..
T Consensus       211 ------~p~~r~~~pedva~~v~~L~s~~~~~-itG~~i~vdGg~~~~~~  253 (259)
T 3edm_A          211 ------TSLKREGSSEDVAGLVAFLASDDAAY-VTGACYDINGGVLFSEG  253 (259)
T ss_dssp             ----------CCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESBCSSBC--
T ss_pred             ------CCCCCCcCHHHHHHHHHHHcCccccC-ccCCEEEECCCcCCCCC
Confidence                  12223568899999999988654332 45699999988765543

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.72  E-value=9.1e-17  Score=135.49  Aligned_cols=226  Identities=15%  Similarity=0.100  Sum_probs=139.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHh-------ccCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLT-------LLED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~   95 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|++....   .+..++.++.+|++|.++++++++       .+|.
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   85 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDC   85 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            457899999999999999999999 68999999999865432   122358889999999999888776       4567


Q ss_pred             eeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      ++|.++....     ..+..+..+.+++|+.++.++++++.... .+..+++.+++...+.+.          +      
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~----------~------  149 (270)
T 1yde_A           86 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ----------A------  149 (270)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC----------T------
T ss_pred             EEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCC----------C------
Confidence            8888764321     22334455689999999999999887531 112355555543221010          0      


Q ss_pred             CCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchh-hHHHHHHHHhhhCCCceeeCCch
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFL-GCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                        ...+   |+.+|...+         .. .+ +++.++||+.++++......... .....+.....  ..|       
T Consensus       150 --~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~p-------  214 (270)
T 1yde_A          150 --QAVP---YVATKGAVTAMTKALALDESPYG-VRVNCISPGNIWTPLWEELAALMPDPRASIREGML--AQP-------  214 (270)
T ss_dssp             --TCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHH--TST-------
T ss_pred             --CCcc---cHHHHHHHHHHHHHHHHHhhhhC-cEEEEEEeCccccchhhhhhhcccchHHHHHHHhh--cCC-------
Confidence              0123   777666554         11 23 99999999999984211000000 00000000000  111       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHH
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPS  291 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~  291 (303)
                            +..+.+++|+|.++++++.....  ..|+.+++.++..+.+.+....
T Consensus       215 ------~~r~~~p~dva~~v~~L~s~~~~--itG~~i~vdGG~~~~~~~~~~~  259 (270)
T 1yde_A          215 ------LGRMGQPAEVGAAAVFLASEANF--CTGIELLVTGGAELGYGCKASR  259 (270)
T ss_dssp             ------TSSCBCHHHHHHHHHHHHHHCTT--CCSCEEEESTTTTSCC------
T ss_pred             ------CCCCcCHHHHHHHHHHHcccCCC--cCCCEEEECCCeecccCcCccc
Confidence                  11256788999999888765222  3468999999987776655443

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.72  E-value=7.1e-17  Score=133.47  Aligned_cols=202  Identities=11%  Similarity=0.015  Sum_probs=130.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh---------ccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT---------LLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~---------~~~~V~   97 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|++....   ....++.+|++|.+++.++++         .+|.++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv   77 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFK-KNGYTVLNIDLSANDQA---DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVF   77 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCCTTS---SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEecCccccc---cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            45799999999999999999999 68999999999876532   245677899999998877775         456688


Q ss_pred             EEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           98 HIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      |.++...     ......+..+.+++|+.++.++++++.....+-.+++.+++...+..                     
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------------------  136 (236)
T 1ooe_A           78 CVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP---------------------  136 (236)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC---------------------
T ss_pred             ECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccC---------------------
Confidence            8876432     12223444568899999999999998875221234555554323210                     


Q ss_pred             CCccchHHHHHHHHH-----Hh---c--CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          173 KSNNFYYVLEDLLKE-----KL---A--GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e-----~~---~--~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      ..+...|+.+|...+     +.   .  .. +++++++|+.+.++.   .    ..      ...  ...          
T Consensus       137 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~---~----~~------~~~--~~~----------  191 (236)
T 1ooe_A          137 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM---N----RK------WMP--NAD----------  191 (236)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH---H----HH------HST--TCC----------
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc---h----hh------cCC--Ccc----------
Confidence            011122777776554     11   1  23 999999999887731   0    01      000  000          


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                         +....+.+|+|.+++..+.++......|+.+++.++.
T Consensus       192 ---~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~  228 (236)
T 1ooe_A          192 ---HSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN  228 (236)
T ss_dssp             ---GGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred             ---ccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCC
Confidence               0124567899999886664433322446888887764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.72  E-value=1.2e-15  Score=129.06  Aligned_cols=216  Identities=11%  Similarity=0.009  Sum_probs=136.4

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCccc---c---ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEIT---A---IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~---~---~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+|+||||+  |+||++++++|+ +.|++|++++|++...   .   ....++.++.+|++|.++++++++.     
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            346899999999  999999999999 6899999999987411   1   1123478899999999998887764     


Q ss_pred             --cCceeEEeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           93 --LEDVTHIFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 --~~~V~~~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                        +|.++|.++....        ..+..+....+++|+.++.++++++.....+-.+++.+++...+..           
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------  151 (275)
T 2pd4_A           83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY-----------  151 (275)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-----------
T ss_pred             CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCC-----------
Confidence              4668888765322        3344555668999999999999999876211134444444222100           


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                             ..+..+   |+.+|...+        ..... +++++++|+.+.++..... .....  ....+..  ..|  
T Consensus       152 -------~~~~~~---Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~--~~~~~~~--~~p--  214 (275)
T 2pd4_A          152 -------MAHYNV---MGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-ADFRM--ILKWNEI--NAP--  214 (275)
T ss_dssp             -------CTTCHH---HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-TTHHH--HHHHHHH--HST--
T ss_pred             -------CCCchh---hHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhc-cccHH--HHHHHHh--cCC--
Confidence                   000122   777766554        11122 9999999999988432111 00001  0011111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 +..+.+++|+|.++++++...... ..|+.|++.++..
T Consensus       215 -----------~~~~~~p~dva~~~~~l~s~~~~~-~tG~~~~vdgg~~  251 (275)
T 2pd4_A          215 -----------LRKNVSLEEVGNAGMYLLSSLSSG-VSGEVHFVDAGYH  251 (275)
T ss_dssp             -----------TSSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             -----------cCCCCCHHHHHHHHHHHhCccccC-CCCCEEEECCCcc
Confidence                       112457899999999988653321 3458888887753

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.71  E-value=3.5e-16  Score=129.55  Aligned_cols=213  Identities=15%  Similarity=0.099  Sum_probs=133.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-------ccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~~   99 (303)
                      |+|+++||||+|+||++++++|+ +.|++|++++|++.+.... .++.++.+|++| +++.++++       .+|.++|.
T Consensus         1 ~~k~vlVTGas~giG~~~a~~l~-~~G~~V~~~~r~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            1 MERKALVTGGSRGIGRAIAEALV-ARGYRVAIASRNPEEAAQS-LGAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHH-HTCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHh-hCcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEEC
Confidence            46899999999999999999999 6899999999987652211 137788999998 76665544       46668888


Q ss_pred             eecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242          100 FWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus       100 ~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      ++....    ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...|...          +      ..+.
T Consensus        78 Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------~------~~~~  141 (239)
T 2ekp_A           78 AAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG----------G------PVPI  141 (239)
T ss_dssp             CCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------T------TSCC
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC----------C------CCCC
Confidence            764322    2244555668999999999999888653  1123456666554333111          0      0012


Q ss_pred             CccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          174 SNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       174 ~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      ..   |+.+|...+         .. .+ ++++++||+.+.++...   .....-.....+..  ..|            
T Consensus       142 ~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~---~~~~~~~~~~~~~~--~~p------------  200 (239)
T 2ekp_A          142 PA---YTTAKTALLGLTRALAKEWARLG-IRVNLLCPGYVETEFTL---PLRQNPELYEPITA--RIP------------  200 (239)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCSGGGH---HHHTCHHHHHHHHT--TCT------------
T ss_pred             cc---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEEeCCccCchhh---ccccCHHHHHHHHh--cCC------------
Confidence            23   777766544         11 24 99999999999874211   00000000011111  111            


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                       ...+.+++|+|.++++++..+... ..|+.+++.++.
T Consensus       201 -~~~~~~~~dvA~~~~~l~s~~~~~-~tG~~~~vdgG~  236 (239)
T 2ekp_A          201 -MGRWARPEEIARVAAVLCGDEAEY-LTGQAVAVDGGF  236 (239)
T ss_dssp             -TSSCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTT
T ss_pred             -CCCCcCHHHHHHHHHHHcCchhcC-CCCCEEEECCCc
Confidence             112568899999999987654321 346889888874

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.71  E-value=4e-16  Score=132.20  Aligned_cols=214  Identities=11%  Similarity=0.036  Sum_probs=133.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+|+||||+|+||++++++|+ +.|++|++++|+......       ...++.++.+|++|.++++++++.      
T Consensus        32 l~~k~vlITGasggIG~~la~~L~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  110 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYA-QAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFG  110 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHH-HHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            356899999999999999999999 579999999998754320       134688899999999998888875      


Q ss_pred             -cCceeEEeecccc------cCChHHHHHHHHHHHHHHH----HHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           93 -LEDVTHIFWVTWA------SQFASDMHKCCEQNKAMMC----NALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 -~~~V~~~~~~~~~------~~~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                       +|.|+|.++....      .....+..+.+++|+.++.    .++..+++.  +..+++++|+...+...         
T Consensus       111 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~isS~~~~~~~---------  179 (279)
T 3ctm_A          111 TIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN--GKGSLIITSSISGKIVN---------  179 (279)
T ss_dssp             CCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCCTTSCC----------
T ss_pred             CCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCeEEEECchHhccCC---------
Confidence             6778898765332      2233445568899999954    555555443  23455555543222100         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH-----HhcC--C-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE-----KLAG--K-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~~~--~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                             +   ..+...|+.+|...+     +...  . -++++++|+.+.++..... .  ...  ...+..  ..|  
T Consensus       180 -------~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~v~~v~Pg~v~t~~~~~~-~--~~~--~~~~~~--~~p--  240 (279)
T 3ctm_A          180 -------I---PQLQAPYNTAKAACTHLAKSLAIEWAPFARVNTISPGYIDTDITDFA-S--KDM--KAKWWQ--LTP--  240 (279)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECSBSSTTTSSC-C--HHH--HHHHHH--HST--
T ss_pred             -------C---CCCcccHHHHHHHHHHHHHHHHHHhcccCCEEEEeccCCcccccccc-C--hHH--HHHHHH--hCC--
Confidence                   0   011122777776655     1111  0 2789999999987432111 0  110  001111  011  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 ...+.+++|+|.++++++..+... ..|+.+++.++..
T Consensus       241 -----------~~~~~~~~dvA~~~~~l~s~~~~~-~tG~~i~vdgG~~  277 (279)
T 3ctm_A          241 -----------LGREGLTQELVGGYLYLASNASTF-TTGSDVVIDGGYT  277 (279)
T ss_dssp             -----------TCSCBCGGGTHHHHHHHHSGGGTT-CCSCEEEESTTCC
T ss_pred             -----------ccCCcCHHHHHHHHHHHhCccccC-ccCCEEEECCCee
Confidence                       112567788899999888654321 3458999988754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.71  E-value=4e-16  Score=129.79  Aligned_cols=215  Identities=14%  Similarity=0.044  Sum_probs=139.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------cc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LL   93 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~   93 (303)
                      .+.+|+++||||+|+||++++++|+ +.|++|++++|+.....    ....++.++.+|++|.++++++++       .+
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   81 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLA-ADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGI   81 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            3467899999999999999999999 68999999999875432    123578889999999999888876       45


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      |.++|.|+....    ..+..+..+.+++|+.++.++++++...   .....+++.+++...+.+.              
T Consensus        82 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------  147 (247)
T 3rwb_A           82 DILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT--------------  147 (247)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC--------------
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC--------------
Confidence            678888765322    2244555668999999999999986543   1123455555553333111              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                          .+..+   |+.+|...+         +. .+ +++..++|+.|..+.......  .....+...    ..+     
T Consensus       148 ----~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~----~~~-----  208 (247)
T 3rwb_A          148 ----PNMAA---YVAAKGGVIGFTRALATELGKYN-ITANAVTPGLIESDGVKASPH--NEAFGFVEM----LQA-----  208 (247)
T ss_dssp             ----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHTSGG--GGGHHHHHH----HSS-----
T ss_pred             ----CCchh---hHHHHHHHHHHHHHHHHHhhhcC-eEEEEEeeCcCcCccccccCh--hHHHHHHhc----ccc-----
Confidence                00223   777765443         22 23 999999999998742111000  000000000    011     


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                              +..+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       209 --------~~r~~~pedva~~v~~L~s~~~~~-itG~~i~vdGG~~  245 (247)
T 3rwb_A          209 --------MKGKGQPEHIADVVSFLASDDARW-ITGQTLNVDAGMV  245 (247)
T ss_dssp             --------SCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTSS
T ss_pred             --------cCCCcCHHHHHHHHHHHhCccccC-CCCCEEEECCCcc
Confidence                    112457889999999888655332 4568999988753

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.71  E-value=1e-15  Score=129.43  Aligned_cols=213  Identities=17%  Similarity=0.160  Sum_probs=135.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHh-------cc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLT-------LL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~-------~~   93 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|++....     . ...++.++.+|++|.++++++++       .+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLL-EAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999 68999999999865422     1 11267888999999998888776       45


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc----cC--CccEEEEeecccccccccCCCcccccCC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR----AK--ALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~--~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                      |.++|.|+....    .....+..+.+++|+.++.++++++...    ..  ...+++.+++...|...           
T Consensus       107 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~-----------  175 (276)
T 2b4q_A          107 DILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM-----------  175 (276)
T ss_dssp             SEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC-----------
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC-----------
Confidence            678888765332    2233444568999999998888877643    11  11456666554333110           


Q ss_pred             cCcCCCCCCCC-ccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          164 YDEECPRVSKS-NNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       164 ~~e~~~~~p~~-~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                           +.  .. +   |+.+|...+         +. .+ +++++++|+.+.++....   ....  ....+......| 
T Consensus       176 -----~~--~~~~---Y~asK~a~~~~~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~---~~~~--~~~~~~~~~~~p-  238 (276)
T 2b4q_A          176 -----GE--QAYA---YGPSKAALHQLSRMLAKELVGEH-INVNVIAPGRFPSRMTRH---IAND--PQALEADSASIP-  238 (276)
T ss_dssp             -----CC--SCTT---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCCCSTTTHH---HHHC--HHHHHHHHHTST-
T ss_pred             -----CC--Cccc---cHHHHHHHHHHHHHHHHHhcccC-eEEEEEEeccCcCcchhh---cchh--HHHHHHhhcCCC-
Confidence                 00  11 3   777766554         11 23 999999999998742110   0000  000011000111 


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                  +..+.+++|+|.++++++..+... ..|+.+++.++.
T Consensus       239 ------------~~r~~~p~dvA~~v~~l~s~~~~~-~tG~~i~vdGG~  274 (276)
T 2b4q_A          239 ------------MGRWGRPEEMAALAISLAGTAGAY-MTGNVIPIDGGF  274 (276)
T ss_dssp             ------------TSSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTT
T ss_pred             ------------CCCcCCHHHHHHHHHHHhCccccC-CCCCEEEeCCCc
Confidence                        112568899999999988654321 346899998874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.71  E-value=1e-15  Score=126.34  Aligned_cols=204  Identities=17%  Similarity=0.076  Sum_probs=132.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      +|+|+||||+|+||++++++|+ +.|++|++++|+..+..        ....++.++++|++|.+++.++++       .
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALA-RDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999 68999999999865432        113478899999999999988876       4


Q ss_pred             cCceeEEeecccccC----ChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           93 LEDVTHIFWVTWASQ----FASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        93 ~~~V~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      +|.++|.++......    +..+..+.+++|+.++.++++++.... ..-..++..++...+...               
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~---------------  145 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLI---------------  145 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCC---------------
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccC---------------
Confidence            566888877643322    455556689999999999999987641 111223333322111000               


Q ss_pred             CCCCCCCccchHHHHHHHHH-----H-hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          168 CPRVSKSNNFYYVLEDLLKE-----K-LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e-----~-~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                       +.  ...   |+.+|...+     + .... +++..++|+.+..+.....                   +   ..    
T Consensus       146 -~~--~~~---Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~-------------------~---~~----  193 (235)
T 3l77_A          146 -PY--GGG---YVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK-------------------P---GK----  193 (235)
T ss_dssp             -TT--CHH---HHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC-------------------S---CC----
T ss_pred             -CC--cch---HHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc-------------------C---Cc----
Confidence             00  122   777666554     1 1122 9999999998876321110                   0   00    


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                        .....+.+++|+|+++++++..+... ..+++....+++.
T Consensus       194 --~~~~~~~~p~dva~~v~~l~~~~~~~-~~~~~~~~~~~~~  232 (235)
T 3l77_A          194 --PKEKGYLKPDEIAEAVRCLLKLPKDV-RVEELMLRSVYQR  232 (235)
T ss_dssp             --CGGGTCBCHHHHHHHHHHHHTSCTTC-CCCEEEECCTTSC
T ss_pred             --ccccCCCCHHHHHHHHHHHHcCCCCC-ccceEEEeecccC
Confidence              11113568899999999998877643 3345555555543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.71  E-value=3.9e-15  Score=126.52  Aligned_cols=220  Identities=11%  Similarity=0.046  Sum_probs=139.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc----------------cc-------ccCCCeEEEEecCCC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI----------------TA-------IQSSSYCFISCDLLN   82 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~----------------~~-------~~~~~~~~~~~D~~~   82 (303)
                      ..+|+++||||+|+||++++++|+ +.|++|++++|++..                ..       ....++.++.+|++|
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   87 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLA-QEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD   87 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence            357899999999999999999999 689999999987321                00       113468889999999


Q ss_pred             HHHHHHHHh-------ccCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeeccc
Q 042242           83 PLDIKRKLT-------LLEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMK  147 (303)
Q Consensus        83 ~~~l~~~~~-------~~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~  147 (303)
                      .++++++++       .+|.++|.++....     ..+..+..+.+++|+.++.++++++....   .+-.+++.+++..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG  167 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence            999888776       46678888765332     22445556689999999999999887651   1123555555433


Q ss_pred             ccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhH
Q 042242          148 HYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGC  217 (303)
Q Consensus       148 ~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~  217 (303)
                      .+...                  .....   |+.+|...+         +. .+ +++..++|+.|..+...... ....
T Consensus       168 ~~~~~------------------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~-~~~~  224 (286)
T 3uve_A          168 GLKAY------------------PHTGH---YVAAKHGVVGLMRAFGVELGQHM-IRVNSVHPTHVKTPMLHNEG-TFKM  224 (286)
T ss_dssp             GTSCC------------------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSBSSTTTSSHH-HHHH
T ss_pred             hccCC------------------CCccH---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEecCcccCCcccccc-hhhh
Confidence            32110                  00122   777766443         22 23 99999999999885322110 0000


Q ss_pred             H---------HHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          218 L---------CVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       218 ~---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      +         .......+. ..  ..+          ..+.+++|+|.++++++...... ..|+.+++.+|..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~-~~--~~p----------~r~~~p~dvA~~v~fL~s~~a~~-itG~~i~vdGG~~l  285 (286)
T 3uve_A          225 FRPDLENPGPDDMAPICQM-FH--TLP----------IPWVEPIDISNAVLFFASDEARY-ITGVTLPIDAGSCL  285 (286)
T ss_dssp             HCTTSSSCCHHHHHHHHHT-TC--SSS----------CSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGG
T ss_pred             ccccccccchhhHHHHHHh-hh--ccC----------CCcCCHHHHHHHHHHHcCccccC-CcCCEEeECCcccc
Confidence            0         000000000 00  001          23568899999999988654322 45689999988543

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.71  E-value=9.2e-16  Score=128.47  Aligned_cols=215  Identities=12%  Similarity=0.103  Sum_probs=137.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc--cc-----c--cCCCeEEEEecCCCHHHHHHHHh------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI--TA-----I--QSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~--~~-----~--~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      |+|+++||||+|+||++++++|+ +.|++|++++|++..  ..     .  ...++.++.+|++|.++++++++      
T Consensus         1 ~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            1 MSKVAMVTGGAQGIGRGISEKLA-ADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999 679999999998654  21     1  13468889999999998888776      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCc-cEEEEeecccccccccCCCcccccCC
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KAL-KHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~-~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                       .+|.++|.++....    ..+..+..+.+++|+.++.++++++....  .+. .+++.+++...+.+.           
T Consensus        80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  148 (258)
T 3a28_C           80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF-----------  148 (258)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC-----------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC-----------
Confidence             56778888765322    22344555689999999999999887641  122 455555543232110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHH--------HH-HHHH
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCL--------CV-YGAV  224 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~--------~~-~~~~  224 (303)
                             .+...   |+.+|...+         +. .+ +++.+++|+.+..+...   ......        .. ...+
T Consensus       149 -------~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~vn~v~PG~v~t~~~~---~~~~~~~~~~~~~~~~~~~~~  214 (258)
T 3a28_C          149 -------PILSA---YSTTKFAVRGLTQAAAQELAPKG-HTVNAYAPGIVGTGMWE---QIDAELSKINGKPIGENFKEY  214 (258)
T ss_dssp             -------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBCSHHHH---HHHHHHHHHHCCCTTHHHHHH
T ss_pred             -------CCchh---HHHHHHHHHHHHHHHHHHHHhhC-eEEEEEECCccCChhhh---hhhhhhccccCCchHHHHHHH
Confidence                   00222   777666554         11 23 99999999998763110   000000        00 0000


Q ss_pred             hhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          225 CKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       225 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      ..  ..             .+..+.+++|+|.++++++..+... ..|+.+++.++..+
T Consensus       215 ~~--~~-------------p~~r~~~p~dvA~~v~~l~s~~~~~-~tG~~i~vdGG~~~  257 (258)
T 3a28_C          215 SS--SI-------------ALGRPSVPEDVAGLVSFLASENSNY-VTGQVMLVDGGMLY  257 (258)
T ss_dssp             HT--TC-------------TTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESSSSCC
T ss_pred             Hh--cC-------------CCCCccCHHHHHHHHHHHhCcccCC-CCCCEEEECCCEec
Confidence            00  01             1123678899999999988654321 34689999887543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.71  E-value=1.9e-15  Score=127.38  Aligned_cols=219  Identities=11%  Similarity=-0.015  Sum_probs=138.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      .+.+|++|||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.++++++++.    
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLG-RLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4567899999999999999999999 68999999887654321        1235688999999999998887764    


Q ss_pred             ---cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 ---LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ---~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                         +|.++|.++....    ..+..+..+.+++|+.++.++++++.....+-.+++.+++....           .    
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~----  158 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK-----------D----  158 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT-----------T----
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc-----------c----
Confidence               4668888765432    22445556689999999999999988763333345555442110           0    


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCcc-ch------hhHHHHHHHHhhhC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLY-NF------LGCLCVYGAVCKHL  228 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~-~~------~~~~~~~~~~~~~~  228 (303)
                        .+..+..+   |+.+|...+         +. .+ +++..++|+.+.++...... ..      ............  
T Consensus       159 --~~~~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  230 (270)
T 3is3_A          159 --FSVPKHSL---YSGSKGAVDSFVRIFSKDCGDKK-ITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH--  230 (270)
T ss_dssp             --CCCTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH--
T ss_pred             --CCCCCCch---hHHHHHHHHHHHHHHHHHhcccC-eEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHh--
Confidence              00001223   777766554         11 23 99999999999874211000 00      000000000000  


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      .             ..+..+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       231 ~-------------~p~~r~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdGG~  269 (270)
T 3is3_A          231 A-------------SPLHRNGWPQDVANVVGFLVSKEGEW-VNGKVLTLDGGA  269 (270)
T ss_dssp             H-------------STTCSCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTC
T ss_pred             c-------------CCCCCCCCHHHHHHHHHHHcCCccCC-ccCcEEEeCCCC
Confidence            0             12223567899999999988654322 346899998874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.71  E-value=1.2e-15  Score=128.43  Aligned_cols=213  Identities=12%  Similarity=0.047  Sum_probs=137.2

Q ss_pred             CCCCEEEEEcCCC-hhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCCCHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTG-LVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG-~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      +.+|+|+||||+| .||++++++|+ +.|++|++++|+.....     .   ...++.++.+|++|.++++++++.    
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            3578999999998 59999999999 68999999999875432     1   124788999999999998888764    


Q ss_pred             ---cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccC
Q 042242           93 ---LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ---~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                         +|.++|.++....    ..+..+..+.+++|+.++.++++++....   ..-.+++.+++...+...          
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------  168 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ----------  168 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC----------
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC----------
Confidence               4668888775332    22445555689999999999999987651   123455555543222110          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                              .+...   |+.+|...+         +. .+ +++.+++|+.+..+.......  ..      ..     ..
T Consensus       169 --------~~~~~---Y~~sKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~~--~~------~~-----~~  223 (266)
T 3o38_A          169 --------HSQSH---YAAAKAGVMALTRCSAIEAVEFG-VRINAVSPSIARHKFLEKTSS--SE------LL-----DR  223 (266)
T ss_dssp             --------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCCCC---------------------------
T ss_pred             --------CCCch---HHHHHHHHHHHHHHHHHHHHHcC-cEEEEEeCCcccchhhhccCc--HH------HH-----HH
Confidence                    01223   777766554         11 23 999999999998742211100  00      00     00


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ....      ..+..+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       224 ~~~~------~~~~r~~~~~dva~~i~~l~s~~~~~-~tG~~i~vdgG~  265 (266)
T 3o38_A          224 LASD------EAFGRAAEPWEVAATIAFLASDYSSY-MTGEVVSVSSQR  265 (266)
T ss_dssp             ---C------CTTSSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESSCC
T ss_pred             HHhc------CCcCCCCCHHHHHHHHHHHcCccccC-ccCCEEEEcCCc
Confidence            0011      12233678899999999988754322 456899998874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.70  E-value=6.1e-16  Score=131.06  Aligned_cols=217  Identities=14%  Similarity=0.079  Sum_probs=136.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      ++|++|||||+|+||++++++|+ +.|++|++++|+.....       ....++.++.+|++|.++++++++.       
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLA-ARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999 68999999999865432       1134688999999999988887763       


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhh--c--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILP--R--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~--~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      +|.++|.|+....    ..+..+..+.+++|+.++.++++++..  .  .....+++.+++...+.+.            
T Consensus       102 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~------------  169 (279)
T 3sju_A          102 IGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV------------  169 (279)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCC------------
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCC------------
Confidence            4668888765332    223445556889999999999998865  1  1122355555543232110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccc-----hh-hHHHHHHHHhhhC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYN-----FL-GCLCVYGAVCKHL  228 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~-----~~-~~~~~~~~~~~~~  228 (303)
                            .+..+   |+.+|...+         +. .+ +++.+++|+.|.++.......     .. ..-.....+..  
T Consensus       170 ------~~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--  237 (279)
T 3sju_A          170 ------MYAAP---YTASKHGVVGFTKSVGFELAKTG-ITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA--  237 (279)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT--
T ss_pred             ------CCChh---HHHHHHHHHHHHHHHHHHHHhhC-cEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh--
Confidence                  00223   787776443         11 23 999999999998731110000     00 00000000100  


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ..             .+..+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       238 ~~-------------p~~r~~~pedvA~~v~~L~s~~a~~-itG~~i~vdGG~~  277 (279)
T 3sju_A          238 KI-------------PLGRYSTPEEVAGLVGYLVTDAAAS-ITAQALNVCGGLG  277 (279)
T ss_dssp             TC-------------TTSSCBCHHHHHHHHHHHTSSGGGG-CCSCEEEESTTCC
T ss_pred             cC-------------CCCCCCCHHHHHHHHHHHhCccccC-cCCcEEEECCCcc
Confidence            11             1223568899999999888655322 4468999988753

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.70  E-value=1e-15  Score=128.51  Aligned_cols=215  Identities=14%  Similarity=0.121  Sum_probs=137.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++.+..    ....++.++.+|++|.++++++++.       +|
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD   82 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFA-REGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLH   82 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCc
Confidence            456899999999999999999999 68999999999865432    1124688899999999998887765       46


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .++|.++....    ..+..+..+.+++|+.++.++++++.....+..+++.+++...| +..                 
T Consensus        83 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~-----------------  144 (263)
T 2a4k_A           83 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAF-----------------  144 (263)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHH-----------------
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCC-----------------
Confidence            68888765322    12334445688999999999999987653213355555543333 110                 


Q ss_pred             CCCCccchHHHHHHH--------HHHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          171 VSKSNNFYYVLEDLL--------KEKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~--------~e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                       +...   |+.+|..        ....... +++++++|+.+.++..... .  ...  ...+..  ..|          
T Consensus       145 -~~~~---Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~--~~~--~~~~~~--~~p----------  203 (263)
T 2a4k_A          145 -GLAH---YAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL-P--PWA--WEQEVG--ASP----------  203 (263)
T ss_dssp             -HHHH---HHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS-C--HHH--HHHHHH--TST----------
T ss_pred             -CcHH---HHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc-C--HHH--HHHHHh--cCC----------
Confidence             0111   4443322        1111222 9999999999988532211 0  110  011111  112          


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                         +..+.+++|+|.++++++..+... ..|+.+++.++..+.
T Consensus       204 ---~~~~~~p~dvA~~v~~l~s~~~~~-~tG~~i~vdgG~~~~  242 (263)
T 2a4k_A          204 ---LGRAGRPEEVAQAALFLLSEESAY-ITGQALYVDGGRSIV  242 (263)
T ss_dssp             ---TCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTTTC
T ss_pred             ---CCCCcCHHHHHHHHHHHhCccccC-CcCCEEEECCCcccc
Confidence               112568899999999988654322 346889998886543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.70  E-value=4.4e-16  Score=129.99  Aligned_cols=211  Identities=13%  Similarity=0.083  Sum_probs=133.5

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecC--CCHHHHHHHHh---
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDL--LNPLDIKRKLT---   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~--~~~~~l~~~~~---   91 (303)
                      .+++|+|+||||+|+||++++++|+ +.|++|++++|+......        ...++.++.+|+  +|.++++++++   
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYA-RYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence            4567899999999999999999999 689999999998655320        123678899999  88988877776   


Q ss_pred             ----ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccc
Q 042242           92 ----LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        92 ----~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                          .+|.++|.++...     ...+..+..+.+++|+.++..+++++...  ..+..+++.+++...+.+.        
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------  159 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR--------  159 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCC--------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCC--------
Confidence                4566888876521     22334445568999999999999998654  1223455555543222110        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                                .+..+   |+.+|...+         +... +++..+.|+.+..+.   .    ..      ...  ..+
T Consensus       160 ----------~~~~~---Y~asK~a~~~l~~~la~e~~~~-irvn~v~PG~v~t~~---~----~~------~~~--~~~  210 (252)
T 3f1l_A          160 ----------ANWGA---YAASKFATEGMMQVLADEYQQR-LRVNCINPGGTRTAM---R----AS------AFP--TED  210 (252)
T ss_dssp             ----------TTCHH---HHHHHHHHHHHHHHHHHHTTTT-CEEEEEECCSBSSHH---H----HH------HCT--TCC
T ss_pred             ----------CCCch---hHHHHHHHHHHHHHHHHHhcCC-cEEEEEecCcccCch---h----hh------hCC--ccc
Confidence                      00223   777766554         1223 888999988776521   0    00      000  000


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHh
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e  287 (303)
                                   ...+.+++|+|.++++++...... ..|+.+++.+|...++.|
T Consensus       211 -------------~~~~~~p~dva~~~~~L~s~~~~~-itG~~i~vdgG~~~~~~q  252 (252)
T 3f1l_A          211 -------------PQKLKTPADIMPLYLWLMGDDSRR-KTGMTFDAQPGRKPGISQ  252 (252)
T ss_dssp             -------------GGGSBCTGGGHHHHHHHHSGGGTT-CCSCEEESSCC-------
T ss_pred             -------------hhccCCHHHHHHHHHHHcCccccC-CCCCEEEeCCCcCCCCCC
Confidence                         011456778899998887655322 456899999998777654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.70  E-value=1.4e-15  Score=127.94  Aligned_cols=220  Identities=14%  Similarity=0.067  Sum_probs=137.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|+..+..     .    ...++.++.+|++|.++++++++.    
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLL-EAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999 68999999999865432     0    122488899999999988877763    


Q ss_pred             ---cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 ---LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ---~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                         +|.++|.++....    ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+.+.           
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  153 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE-----------  153 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC-----------
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC-----------
Confidence               4668888765322    2344555668999999999999998764  1223344444442222110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccch----hhHHHHHHH-HhhhC
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNF----LGCLCVYGA-VCKHL  228 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~----~~~~~~~~~-~~~~~  228 (303)
                                .....|+.+|...+         +. .+ +++..++|+.+.++........    ......+.. +.+..
T Consensus       154 ----------~~~~~Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (265)
T 3lf2_A          154 ----------PHMVATSAARAGVKNLVRSMAFEFAPKG-VRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNK  222 (265)
T ss_dssp             ----------TTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHT
T ss_pred             ----------CCchhhHHHHHHHHHHHHHHHHHhcccC-eEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhcc
Confidence                      01122777665443         22 23 9999999999987321100000    000000000 11100


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      ..|             +..+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       223 ~~p-------------~~r~~~pedvA~~v~fL~s~~~~~-itG~~i~vdGG~~  262 (265)
T 3lf2_A          223 QIP-------------LGRLGKPIEAARAILFLASPLSAY-TTGSHIDVSGGLS  262 (265)
T ss_dssp             TCT-------------TCSCBCHHHHHHHHHHHHSGGGTT-CCSEEEEESSSCC
T ss_pred             CCC-------------cCCCcCHHHHHHHHHHHhCchhcC-cCCCEEEECCCCc
Confidence            111             123568899999999988654322 4568999988764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.70  E-value=3.2e-15  Score=127.85  Aligned_cols=221  Identities=10%  Similarity=0.055  Sum_probs=139.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc------------cc-------ccCCCeEEEEecCCCHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI------------TA-------IQSSSYCFISCDLLNPLDI   86 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~------------~~-------~~~~~~~~~~~D~~~~~~l   86 (303)
                      +.+|++|||||+|+||++++++|+ +.|++|++++|++..            ..       ....++.++++|++|.+++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLA-REGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            356899999999999999999999 689999999987321            00       1134688999999999998


Q ss_pred             HHHHh-------ccCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeeccccccc
Q 042242           87 KRKLT-------LLEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVS  151 (303)
Q Consensus        87 ~~~~~-------~~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~  151 (303)
                      +++++       .+|.++|.++....     ..+..+..+.+++|+.++..+++++...   ..+..+++.+++...+.+
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~  184 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRG  184 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC
Confidence            88776       45668888765322     2245555678999999999999987654   122345555554323211


Q ss_pred             ccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccch--h----
Q 042242          152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNF--L----  215 (303)
Q Consensus       152 ~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~--~----  215 (303)
                      .                  .....   |+.+|...+         +. .+ +++..++||.|.++........  .    
T Consensus       185 ~------------------~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~~~~~~~~~~  242 (299)
T 3t7c_A          185 A------------------ENIGN---YIASKHGLHGLMRTMALELGPRN-IRVNIVCPSSVATPMLLNEPTYRMFRPDL  242 (299)
T ss_dssp             C------------------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCBSSTTTSSHHHHHHHCTTS
T ss_pred             C------------------CCcch---HHHHHHHHHHHHHHHHHHhcccC-cEEEEEecCCccCccccccchhhhhhhhh
Confidence            0                  00222   777766544         22 24 9999999999988532211000  0    


Q ss_pred             --hHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          216 --GCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       216 --~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                        .....+....+...   ..+          ..+.+++|+|.++++++...... ..|+.+++.+|..+
T Consensus       243 ~~~~~~~~~~~~~~~~---~~p----------~r~~~pedvA~~v~fL~s~~a~~-itG~~i~vdGG~~l  298 (299)
T 3t7c_A          243 ENPTVEDFQVASRQMH---VLP----------IPYVEPADISNAILFLVSDDARY-ITGVSLPVDGGALL  298 (299)
T ss_dssp             SSCCHHHHHHHHHHHS---SSS----------CSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGG
T ss_pred             ccchhhHHHHHhhhhc---ccC----------cCCCCHHHHHHHHHHHhCccccc-CcCCEEeeCCCccc
Confidence              00000000000000   001          23568899999999988654322 44689999988543

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.70  E-value=1.2e-16  Score=133.62  Aligned_cols=225  Identities=12%  Similarity=0.025  Sum_probs=131.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc----CceeEEeeccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL----EDVTHIFWVTW  104 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~----~~V~~~~~~~~  104 (303)
                      |+|+||||+|+||++++++|+ +.|++|++++|++.+...     . +.+|++|.++++++++..    |.++|.|+...
T Consensus         2 k~vlVTGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~-----~-~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLE-AAGHQIVGIDIRDAEVIA-----D-LSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSSSSEEC-----C-TTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCchhhcc-----c-cccCCCCHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence            689999999999999999999 689999999998765321     1 568999999999998765    66888876543


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCC---------CCCC
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP---------RVSK  173 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~---------~~p~  173 (303)
                      .... .  .+.+++|+.++.++++++...  ..+..+++.+++...|..... .+.. .....+.+.         ..+.
T Consensus        75 ~~~~-~--~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~  149 (257)
T 1fjh_A           75 QTKV-L--GNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFD-KNPL-ALALEAGEEAKARAIVEHAGEQ  149 (257)
T ss_dssp             TCSS-H--HHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGG-GCTT-HHHHHHTCHHHHHHHHHTCCTT
T ss_pred             Cccc-H--HHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccc-cchh-hhhhcccchhhhhhhhhcccCC
Confidence            1222 3  348999999999999998754  122346666665544421100 0000 000000000         0111


Q ss_pred             CccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          174 SNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       174 ~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      .+...|+.+|...+         +. .+ +++++++|+.+.++.......  ...  ......    .+   .      .
T Consensus       150 ~~~~~Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~~--~~~--~~~~~~----~~---~------~  211 (257)
T 1fjh_A          150 GGNLAYAGSKNALTVAVRKRAAAWGEAG-VRLNTIAPGATETPLLQAGLQ--DPR--YGESIA----KF---V------P  211 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHTT-CEEEEEEECC-----------------------------C---C------C
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhhcC-eEEEEEeeCCCCCccchhhcc--chh--HHHHHH----hc---c------c
Confidence            12234787777554         11 23 999999999998843211100  000  000000    00   0      1


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      .+..+.+++|+|.++++++..+... ..|+.|++.++...+
T Consensus       212 ~~~~~~~~~dvA~~~~~l~~~~~~~-~tG~~~~vdgG~~~~  251 (257)
T 1fjh_A          212 PMGRRAEPSEMASVIAFLMSPAASY-VHGAQIVIDGGIDAV  251 (257)
T ss_dssp             STTSCCCTHHHHHHHHHHTSGGGTT-CCSCEEEESTTHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHhCchhcC-CcCCEEEECCCcccc
Confidence            1113678899999999988665321 345889888875443

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.70  E-value=1.2e-15  Score=129.42  Aligned_cols=213  Identities=16%  Similarity=0.119  Sum_probs=137.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc------cCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL------LEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~------~~~V   96 (303)
                      .+|+||||||+|+||++++++|+ +.|++|++++|+..+..    ....++.++++|++|.++++++++.      .|.+
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLH-ADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            46799999999999999999999 68999999999876532    1235788999999999999888874      3446


Q ss_pred             eEE-eecccc---------cCChHHHHHHHHHHHHHHHHHHHHHhhcc--------CCccEEEEeecccccccccCCCcc
Q 042242           97 THI-FWVTWA---------SQFASDMHKCCEQNKAMMCNALNAILPRA--------KALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        97 ~~~-~~~~~~---------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--------~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                      +|. +.....         ........+.+++|+.++.++++++....        ..-.+++.+++...+...      
T Consensus       108 v~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------  181 (281)
T 3ppi_A          108 VVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQ------  181 (281)
T ss_dssp             EECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCC------
T ss_pred             EEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCC------
Confidence            676 322211         22334455689999999999999887541        123355555543332110      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  228 (303)
                                  .+...   |+.+|...+         +. .+ +++.+++|+.|..+.....   ...  ....+..  
T Consensus       182 ------------~~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~~~---~~~--~~~~~~~--  238 (281)
T 3ppi_A          182 ------------IGQTA---YAAAKAGVIGLTIAAARDLSSAG-IRVNTIAPGTMKTPIMESV---GEE--ALAKFAA--  238 (281)
T ss_dssp             ------------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCHHHHTT---CHH--HHHHHHH--
T ss_pred             ------------CCCcc---cHHHHHHHHHHHHHHHHHHhhcC-eEEEEEecCcCCchhhhcc---cHH--HHHHHHh--
Confidence                        00223   777776443         21 23 9999999999876311110   011  0011111  


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      ..+.  +          ..+.+++|+|+++++++.++...   |+.+++.++..++
T Consensus       239 ~~~~--~----------~~~~~pedvA~~v~~l~s~~~~t---G~~i~vdGG~~~~  279 (281)
T 3ppi_A          239 NIPF--P----------KRLGTPDEFADAAAFLLTNGYIN---GEVMRLDGAQRFT  279 (281)
T ss_dssp             TCCS--S----------SSCBCHHHHHHHHHHHHHCSSCC---SCEEEESTTCCCC
T ss_pred             cCCC--C----------CCCCCHHHHHHHHHHHHcCCCcC---CcEEEECCCcccC
Confidence            1111  1          12568899999999998765433   5999999987654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.70  E-value=2.5e-15  Score=126.46  Aligned_cols=225  Identities=15%  Similarity=0.071  Sum_probs=139.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------c--CCCeEEEEecCCCHHHHHHHHhc---cC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------Q--SSSYCFISCDLLNPLDIKRKLTL---LE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~--~~~~~~~~~D~~~~~~l~~~~~~---~~   94 (303)
                      ++|++|||||+|+||++++++|+ +.|++|++++|+......       .  ...+..+.+|+++.++++++++.   +|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLV-AEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            46899999999999999999999 689999999998654320       1  23567889999999999888874   56


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.|+....    ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+...                
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------  151 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPS----------------  151 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCC----------------
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCC----------------
Confidence            68888765332    2234455568999999988888776654  1233455555543332110                


Q ss_pred             CCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccch------hhHHHHHHHHhhhCCCcee
Q 042242          169 PRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNF------LGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  233 (303)
                        .+..+   |+.+|...+     +   .... +++..++|+.+..+........      ...-......... ..   
T Consensus       152 --~~~~~---Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---  222 (267)
T 3t4x_A          152 --QEMAH---YSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKE-NR---  222 (267)
T ss_dssp             --TTCHH---HHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHH-HC---
T ss_pred             --CcchH---HHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhc-cC---
Confidence              00223   777776554     1   1223 8999999998887311000000      0000000000000 00   


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccH
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTW  285 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~  285 (303)
                       +.      ..+..+.+++|+|.++++++...... ..|+.+++.+|...++
T Consensus       223 -~~------~~~~r~~~pedvA~~v~fL~s~~~~~-itG~~i~vdGG~~~si  266 (267)
T 3t4x_A          223 -PT------SIIQRLIRPEEIAHLVTFLSSPLSSA-INGSALRIDGGLVRSV  266 (267)
T ss_dssp             -TT------CSSCSCBCTHHHHHHHHHHHSGGGTT-CCSCEEEESTTCSCSC
T ss_pred             -Cc------ccccCccCHHHHHHHHHHHcCccccC-ccCCeEEECCCccccc
Confidence             00      11234678899999999987654322 4569999999877653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.69  E-value=1.1e-15  Score=127.23  Aligned_cols=212  Identities=14%  Similarity=0.099  Sum_probs=129.9

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh---ccCceeEE
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT---LLEDVTHI   99 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~---~~~~V~~~   99 (303)
                      .....+|+|+||||+|+||++++++|+ +.|++|++++|++...... ..+.++ +|+  .++++++++   .+|.++|.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~-~~~~~~-~D~--~~~~~~~~~~~~~iD~lv~~   88 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLS-QEGAEVTICARNEELLKRS-GHRYVV-CDL--RKDLDLLFEKVKEVDILVLN   88 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHT-CSEEEE-CCT--TTCHHHHHHHSCCCSEEEEC
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHHHHhh-CCeEEE-eeH--HHHHHHHHHHhcCCCEEEEC
Confidence            445567999999999999999999999 6899999999986432211 356667 999  334444444   56778898


Q ss_pred             eecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242          100 FWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus       100 ~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      |+....    .....+..+.+++|+.++..+.+++...  ..+..+++.+|+...|...                     
T Consensus        89 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------------  147 (249)
T 1o5i_A           89 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI---------------------  147 (249)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------------------
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC---------------------
Confidence            765322    2234455568899999988776665443  1123456666554333110                     


Q ss_pred             CccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHH-HHhhhCCCceeeCCchhhhh
Q 042242          174 SNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYG-AVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       174 ~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~  242 (303)
                      .+...|+.+|...+         .. .+ +++++++|+.+.++....   .....  .. .+..  ..|           
T Consensus       148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t~~~~~---~~~~~--~~~~~~~--~~p-----------  208 (249)
T 1o5i_A          148 ENLYTSNSARMALTGFLKTLSFEVAPYG-ITVNCVAPGWTETERVKE---LLSEE--KKKQVES--QIP-----------  208 (249)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCTTHHH---HSCHH--HHHHHHT--TST-----------
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcC-eEEEEEeeCCCccCcccc---cchhh--HHHHHHh--cCC-----------
Confidence            01112776665443         11 24 999999999999842110   00010  00 1111  111           


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                        ...+.+++|+|+++++++..+... ..|+.|++.++..
T Consensus       209 --~~~~~~~~dvA~~i~~l~s~~~~~-~tG~~~~vdgG~~  245 (249)
T 1o5i_A          209 --MRRMAKPEEIASVVAFLCSEKASY-LTGQTIVVDGGLS  245 (249)
T ss_dssp             --TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTCC
T ss_pred             --CCCCcCHHHHHHHHHHHcCccccC-CCCCEEEECCCcc
Confidence              123668899999999888654322 3458999988753

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.69  E-value=2.3e-15  Score=127.77  Aligned_cols=220  Identities=14%  Similarity=0.018  Sum_probs=137.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~------   91 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|+.....        ....++.++.+|++|.+++.++++      
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999999 68999999999865311        113468889999999998877765      


Q ss_pred             -ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           92 -LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        92 -~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                       .+|.++|.++....    ..+..+..+.+++|+.++.++++++.....+..+++.+++...+...              
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--------------  171 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA--------------  171 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS--------------
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCC--------------
Confidence             35668888765422    22345555689999999999999988752223455555543222100              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCcc-chhh-----HHHHHHHHhhhCCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLY-NFLG-----CLCVYGAVCKHLNL  230 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~-~~~~-----~~~~~~~~~~~~~~  230 (303)
                            ..+...|+.+|...+         +. .+ +++.+++|+.+.++...... .+..     .......+..... 
T Consensus       172 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  243 (283)
T 1g0o_A          172 ------VPKHAVYSGSKGAIETFARCMAIDMADKK-ITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQW-  243 (283)
T ss_dssp             ------CSSCHHHHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHS-
T ss_pred             ------CCCCcchHHHHHHHHHHHHHHHHHhcccC-eEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcC-
Confidence                  001122777766544         11 23 99999999999874211000 0000     0000000000000 


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                  ..+..+.+++|+|.++++++...... ..|+.+++.++.
T Consensus       244 ------------~p~~r~~~p~dvA~~v~~l~s~~~~~-itG~~i~vdgG~  281 (283)
T 1g0o_A          244 ------------SPLRRVGLPIDIARVVCFLASNDGGW-VTGKVIGIDGGA  281 (283)
T ss_dssp             ------------CTTCSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC
T ss_pred             ------------CCCCCCcCHHHHHHHHHHHhCccccC-cCCCEEEeCCCc
Confidence                        11123568899999999988654321 345889888874

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.69  E-value=5.1e-16  Score=128.72  Aligned_cols=201  Identities=9%  Similarity=-0.023  Sum_probs=131.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh---------ccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT---------LLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~---------~~~~V~   97 (303)
                      ++|+|+||||+|+||++++++|+ +.|++|++++|++....   ....++.+|++|.++++++++         .+|.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv   81 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFR-ARNWWVASIDVVENEEA---SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAIL   81 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSCCTTS---SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-hCCCEEEEEeCChhhcc---CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            46899999999999999999999 68999999999876532   245677899999998887776         455688


Q ss_pred             EEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           98 HIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      |.++...     ......+..+.+++|+.++..+++++.....+-.+++.+++...+..                     
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------------  140 (241)
T 1dhr_A           82 CVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG---------------------  140 (241)
T ss_dssp             ECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC---------------------
T ss_pred             EcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccC---------------------
Confidence            8876532     12233444568899999999999998765211235555554323211                     


Q ss_pred             CCccchHHHHHHHHH-----Hh---c--CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          173 KSNNFYYVLEDLLKE-----KL---A--GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e-----~~---~--~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      ..+...|+.+|...+     +.   .  .. +++++++|+.+-.+.   .    ..      ...  ..           
T Consensus       141 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~---~----~~------~~~--~~-----------  194 (241)
T 1dhr_A          141 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM---N----RK------SMP--EA-----------  194 (241)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH---H----HH------HST--TS-----------
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc---c----cc------cCc--ch-----------
Confidence            001122787777554     11   1  23 999999999876521   0    00      000  00           


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                        .+......+|+|.++++++...... ..|+.+++.++.
T Consensus       195 --~~~~~~~~~~vA~~v~~l~~~~~~~-~~G~~~~v~g~~  231 (241)
T 1dhr_A          195 --DFSSWTPLEFLVETFHDWITGNKRP-NSGSLIQVVTTD  231 (241)
T ss_dssp             --CGGGSEEHHHHHHHHHHHHTTTTCC-CTTCEEEEEEET
T ss_pred             --hhccCCCHHHHHHHHHHHhcCCCcC-ccceEEEEeCCC
Confidence              0112356789999999888654322 346888887754

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.69  E-value=3.8e-16  Score=131.78  Aligned_cols=199  Identities=11%  Similarity=0.010  Sum_probs=125.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|+.....    ....++.++.+|++|.++++++++       .+|
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALA-GAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            356899999999999999999999 68999999999865432    113578899999999999888876       566


Q ss_pred             ceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--C--CccEEEEeecccccccccCCCcccccCCcC
Q 042242           95 DVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRA--K--ALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        95 ~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~--~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .++|.|+....     ..+..+..+.+++|+.++..+++++....  .  +-.+++.+++...+.+.             
T Consensus       105 ~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-------------  171 (272)
T 4dyv_A          105 VLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPR-------------  171 (272)
T ss_dssp             EEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCC-------------
T ss_pred             EEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCC-------------
Confidence            78888765322     23445556689999999999888877651  1  12355555543222110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .+..+   |+.+|...+         .. .+ +++..++|+.|..+......   ..            .+....
T Consensus       172 -----~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~---~~------------~~~~~~  227 (272)
T 4dyv_A          172 -----PYSAP---YTATKHAITGLTKSTSLDGRVHD-IACGQIDIGNADTPMAQKMK---AG------------VPQADL  227 (272)
T ss_dssp             -----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEEEECC-------------------------------
T ss_pred             -----CCchH---HHHHHHHHHHHHHHHHHHhCccC-EEEEEEEECcccChhhhhhc---cc------------chhhhh
Confidence                 00223   777766554         11 23 99999999998874221110   00            000000


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDIS  268 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~  268 (303)
                      .      .....+.+++|+|.++++++..+...
T Consensus       228 ~------~~~~~~~~pedvA~~v~fL~s~~~~~  254 (272)
T 4dyv_A          228 S------IKVEPVMDVAHVASAVVYMASLPLDA  254 (272)
T ss_dssp             --------------CHHHHHHHHHHHHHSCTTS
T ss_pred             c------ccccCCCCHHHHHHHHHHHhCCCCcC
Confidence            0      11122568899999999999877653

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.69  E-value=3.4e-15  Score=124.71  Aligned_cols=214  Identities=13%  Similarity=0.071  Sum_probs=135.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-cc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-TA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .+|+|+||||+|+||++++++|+ +.|++|++++++... ..       ....++.++.+|+.|.++++..++.      
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLA-NDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            46899999999999999999999 689999887554332 21       1234677889999999888776654      


Q ss_pred             -------cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           93 -------LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 -------~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                             +|.++|.++....    ........+.+++|+.++..+++++.....+-.+++.+++...+.+.         
T Consensus        85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~---------  155 (255)
T 3icc_A           85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL---------  155 (255)
T ss_dssp             HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC---------
T ss_pred             ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC---------
Confidence                   5668888665322    22344445688999999999999988753223345555543222110         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                                  .....|+.+|...+         +. .+ +++..++|+.+..+........ .....  ....  .. 
T Consensus       156 ------------~~~~~Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~~~-~~~~~--~~~~--~~-  216 (255)
T 3icc_A          156 ------------PDFIAYSMTKGAINTMTFTLAKQLGARG-ITVNAILPGFVKTDMNAELLSD-PMMKQ--YATT--IS-  216 (255)
T ss_dssp             ------------TTBHHHHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBCCSSSTTTTTS-HHHHH--HHHH--TS-
T ss_pred             ------------CCcchhHHhHHHHHHHHHHHHHHHHhcC-eEEEEEEEeeecccchhhhccc-HHHHH--hhhc--cC-
Confidence                        01122777766554         11 23 9999999999987532211110 00000  0100  11 


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                  .+..+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       217 ------------~~~~~~~~~dva~~~~~l~s~~~~~-~tG~~i~vdgG~~  254 (255)
T 3icc_A          217 ------------AFNRLGEVEDIADTAAFLASPDSRW-VTGQLIDVSGGSC  254 (255)
T ss_dssp             ------------TTSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESSSTT
T ss_pred             ------------CcCCCCCHHHHHHHHHHHhCcccCC-ccCCEEEecCCee
Confidence                        1123567899999999887644322 4569999988753

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.69  E-value=1.6e-15  Score=127.56  Aligned_cols=162  Identities=13%  Similarity=0.059  Sum_probs=111.8

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCC---CeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHh---
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTAN---WKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLT---   91 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~---   91 (303)
                      ...++|+||||||+|+||++++++|+ +.|   ++|++++|+.....      ....++.++.+|++|.++++++++   
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~-~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALL-NLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHH-TSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHH-hcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHH
Confidence            34456899999999999999999999 678   99999999876432      113478899999999998888876   


Q ss_pred             ------ccCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhccC--------C-----ccEEEEeeccc
Q 042242           92 ------LLEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRAK--------A-----LKHVSLQTGMK  147 (303)
Q Consensus        92 ------~~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--------~-----~~~~~~~s~~~  147 (303)
                            .+|.|+|+++...     ......+..+.+++|+.++.++++++.....        +     ..+++.+++..
T Consensus        96 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  175 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL  175 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred             HhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccc
Confidence                  5777899976543     2233455556899999999999998876511        1     24566665543


Q ss_pred             ccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceee
Q 042242          148 HYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLG  205 (303)
Q Consensus       148 ~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G  205 (303)
                      .+...          +     +..+..+   |+.+|...+         +. .+ ++++++||+.|..
T Consensus       176 ~~~~~----------~-----~~~~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~Pg~v~t  224 (267)
T 1sny_A          176 GSIQG----------N-----TDGGMYA---YRTSKSALNAATKSLSVDLYPQR-IMCVSLHPGWVKT  224 (267)
T ss_dssp             GCSTT----------C-----CSCCCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEECCCSBCS
T ss_pred             ccccC----------C-----CCCCchH---HHHHHHHHHHHHHHHHHHhhcCC-cEEEEeCCcceec
Confidence            33111          0     0011223   777766554         11 23 9999999998876

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.69  E-value=8.2e-16  Score=128.46  Aligned_cols=220  Identities=15%  Similarity=0.081  Sum_probs=134.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHh-------ccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLT-------LLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~-------~~~   94 (303)
                      |+|+++||||+|+||++++++|++.+ ++.|++++|+.....    ....++.++.+|++|.++++++++       .+|
T Consensus         1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   80 (254)
T 3kzv_A            1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID   80 (254)
T ss_dssp             -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCcc
Confidence            57899999999999999999998433 578999999865432    112468889999999999888776       456


Q ss_pred             ceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.++....     ..+..+....+++|+.++..+++++... ..+-.+++.+++...+...                
T Consensus        81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~~~----------------  144 (254)
T 3kzv_A           81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYF----------------  144 (254)
T ss_dssp             EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCCSS----------------
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhccCC----------------
Confidence            68888765322     2244555568999999999999988543 1101345554443222100                


Q ss_pred             CCCCCCccchHHHHHHHHH-----Hh---cCCcceEEecCCceeecCCCCccchhh----HHHHHHHHhhhCCCceeeCC
Q 042242          169 PRVSKSNNFYYVLEDLLKE-----KL---AGKVAWSVHRPGLLLGSSHRSLYNFLG----CLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e-----~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g  236 (303)
                        .+...   |+.+|...+     +.   .+ +++..++|+.+..+..........    .......+..  .       
T Consensus       145 --~~~~~---Y~asK~a~~~~~~~la~e~~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~-------  209 (254)
T 3kzv_A          145 --SSWGA---YGSSKAALNHFAMTLANEERQ-VKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRG--L-------  209 (254)
T ss_dssp             --CCSHH---HHHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHH--H-------
T ss_pred             --CCcch---HHHHHHHHHHHHHHHHhhccC-cEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHH--H-------
Confidence              00222   777776554     11   23 999999999998853321110000    0000000000  0       


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                            .....+.+++|+|.++++++.........|+.+++.+++..
T Consensus       210 ------~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~~  250 (254)
T 3kzv_A          210 ------KENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPALA  250 (254)
T ss_dssp             ------HTTC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGGG
T ss_pred             ------HhcCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCcccc
Confidence                  11223567889999999988665211144688988876543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.69  E-value=1.4e-15  Score=127.62  Aligned_cols=191  Identities=19%  Similarity=0.126  Sum_probs=124.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +.+|+||||||+|+||++++++|+ +.|++|++++|+..+..       ....++.++.+|++|.+++.++++.      
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLG-SLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            346899999999999999999999 68999999999876532       1134688899999999998887765      


Q ss_pred             -cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 -LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 -~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       +|.++|.++...     ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...            
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  173 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPV------------  173 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCC------------
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCC------------
Confidence             566888877521     22344555568999999999999987653  1233455555543222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                            .+...   |+.+|...+         +. .+ +++.+++||.+..+.....    ..           .     
T Consensus       174 ------~~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~----~~-----------~-----  223 (262)
T 3rkr_A          174 ------ADGAA---YTASKWGLNGLMTSAAEELRQHQ-VRVSLVAPGSVRTEFGVGL----SA-----------K-----  223 (262)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCC-------------------------------
T ss_pred             ------CCCch---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEecCCCcCCccccc----cc-----------c-----
Confidence                  00222   777765443         11 23 9999999998876321100    00           0     


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                              .......+++|+|+++++++..+..
T Consensus       224 --------~~~~~~~~p~dvA~~v~~l~s~~~~  248 (262)
T 3rkr_A          224 --------KSALGAIEPDDIADVVALLATQADQ  248 (262)
T ss_dssp             -------------CCCHHHHHHHHHHHHTCCTT
T ss_pred             --------cccccCCCHHHHHHHHHHHhcCccc
Confidence                    1111256889999999998876543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.69  E-value=2.4e-15  Score=127.29  Aligned_cols=221  Identities=12%  Similarity=0.020  Sum_probs=137.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc-------------ccc-------ccCCCeEEEEecCCCHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-------------ITA-------IQSSSYCFISCDLLNPLD   85 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~-------------~~~-------~~~~~~~~~~~D~~~~~~   85 (303)
                      +.+|+++||||+|+||++++++|+ +.|++|++++|+..             ...       ....++.++.+|++|.++
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMA-AEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHH-HcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            456899999999999999999999 68999999998421             110       113468889999999999


Q ss_pred             HHHHHhc-------cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeeccccccc
Q 042242           86 IKRKLTL-------LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVS  151 (303)
Q Consensus        86 l~~~~~~-------~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~  151 (303)
                      ++++++.       +|.++|.|+....    ..+..+..+.+++|+.++.++++++....   .+-.+++.+++...+..
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~  167 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKM  167 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCC
Confidence            8887764       5668888765432    23445556689999999999999876541   11235555554333211


Q ss_pred             ccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHH
Q 042242          152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVY  221 (303)
Q Consensus       152 ~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  221 (303)
                      .                +  ....   |+.+|...+         +. .+ +++..++|+.+..+.....  .....  .
T Consensus       168 ~----------------~--~~~~---Y~asKaa~~~~~~~la~e~~~~g-i~vn~v~PG~v~T~~~~~~--~~~~~--~  221 (277)
T 3tsc_A          168 Q----------------P--FMIH---YTASKHAVTGLARAFAAELGKHS-IRVNSVHPGPVNTPMGSGD--MVTAV--G  221 (277)
T ss_dssp             C----------------S--SCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSBSSGGGSHH--HHHHH--H
T ss_pred             C----------------C--Cchh---hHHHHHHHHHHHHHHHHHhCccC-eEEEEEEeCCCcCCcccch--hhhhh--h
Confidence            0                0  0222   777766544         22 23 9999999999987422110  00000  0


Q ss_pred             HHHhhh-CCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          222 GAVCKH-LNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       222 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ...... .........      .. ..+.+++|+|.++++++...... ..|+.+++.+|.
T Consensus       222 ~~~~~~~~~~~~~~~~------~p-~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG~  274 (277)
T 3tsc_A          222 QAMETNPQLSHVLTPF------LP-DWVAEPEDIADTVCWLASDESRK-VTAAQIPVDQGS  274 (277)
T ss_dssp             HHHHTCGGGTTTTCCS------SS-CSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTG
T ss_pred             hcccccHHHHHHhhhc------cC-CCCCCHHHHHHHHHHHhCccccC-CcCCEEeeCCCc
Confidence            000000 000000000      11 13678999999999988655432 446899998874

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.69  E-value=8.4e-16  Score=129.68  Aligned_cols=122  Identities=16%  Similarity=0.064  Sum_probs=91.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      .+|+|+||||+|+||++++++|+ + .|++|++++|+..+..     .  ...++.++.+|++|.++++++++       
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLC-RLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHH-HHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999 6 7999999999865421     0  13468899999999999888887       


Q ss_pred             ccCceeEEeecccccC---C-hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccccc
Q 042242           92 LLEDVTHIFWVTWASQ---F-ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHY  149 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~~---~-~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y  149 (303)
                      .+|.|+|+|+......   . ..+..+.+++|+.++.++++++.....+-.+++++|+...|
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~  143 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSV  143 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhh
Confidence            5667889876543221   1 24455689999999999999998763222356666654444

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.68  E-value=8.3e-16  Score=132.67  Aligned_cols=158  Identities=20%  Similarity=0.158  Sum_probs=110.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCC--CeEEEEecCCCHHHHHHHHhcc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSS--SYCFISCDLLNPLDIKRKLTLL---   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~--~~~~~~~D~~~~~~l~~~~~~~---   93 (303)
                      +++|+||||||+|+||++++++|+ ..|++|++++|+..+..     .  ...  .+.++.+|++|.+++.++++.+   
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~-~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLL-NQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999 68999999999876532     0  112  6889999999999988888644   


Q ss_pred             ----CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-C-------CccEEEEeecccccccccCCCc
Q 042242           94 ----EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA-K-------ALKHVSLQTGMKHYVSLQGLPE  157 (303)
Q Consensus        94 ----~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-------~~~~~~~~s~~~~y~~~~~~~g  157 (303)
                          |.++|.|+...    ...+..+..+.+++|+.++.++++++.... .       +-.+++.+|+...+.+.     
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~-----  159 (319)
T 3ioy_A           85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA-----  159 (319)
T ss_dssp             TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC-----
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC-----
Confidence                56888876532    222445555689999999999999887652 1       13345555543333111     


Q ss_pred             ccccCCcCcCCCCCCCCccchHHHHHH----HHH-----Hh-cCCcceEEecCCceeec
Q 042242          158 EKQVRFYDEECPRVSKSNNFYYVLEDL----LKE-----KL-AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       158 ~~~~~~~~e~~~~~p~~~~~~y~~~k~----~~e-----~~-~~~~~~~ilRp~~v~G~  206 (303)
                                 +  ....   |+.+|.    +.+     +. .+ +++++++|+.|.++
T Consensus       160 -----------~--~~~~---Y~aSKaal~~~~~~la~e~~~~g-i~v~~v~PG~v~T~  201 (319)
T 3ioy_A          160 -----------G--SPGI---YNTTKFAVRGLSESLHYSLLKYE-IGVSVLCPGLVKSY  201 (319)
T ss_dssp             -----------S--SSHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEECCCCBC--
T ss_pred             -----------C--CCHH---HHHHHHHHHHHHHHHHHHhhhcC-CEEEEEEcCeEccC
Confidence                       0  0122   888777    333     22 23 99999999999874

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.68  E-value=5.8e-15  Score=127.29  Aligned_cols=221  Identities=14%  Similarity=0.078  Sum_probs=136.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc------------c-------ccCCCeEEEEecCCCHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT------------A-------IQSSSYCFISCDLLNPLDIK   87 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~------------~-------~~~~~~~~~~~D~~~~~~l~   87 (303)
                      .+|+||||||+|+||+++++.|+ +.|++|++++|+....            .       ....++.++++|++|.++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la-~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLA-QDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            46899999999999999999999 6899999998863211            0       11346888999999999988


Q ss_pred             HHHh-------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeeccccccccc
Q 042242           88 RKLT-------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQ  153 (303)
Q Consensus        88 ~~~~-------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~  153 (303)
                      ++++       .+|.++|.|+....    ..+..+..+.+++|+.++..+++++....   ..-.+++.+++...+.+. 
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~-  202 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGA-  202 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCC-
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCC-
Confidence            8876       45678888765432    23445556689999999999999886541   112345555543232110 


Q ss_pred             CCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHH
Q 042242          154 GLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA  223 (303)
Q Consensus       154 ~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  223 (303)
                                          .....|+.+|...+         +. .+ +++..++|+.|.++.....     ..  ...
T Consensus       203 --------------------~~~~~Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~-----~~--~~~  254 (317)
T 3oec_A          203 --------------------PGQSHYAASKHGVQGLMLSLANEVGRHN-IRVNSVNPGAVNTEMALNE-----KL--LKM  254 (317)
T ss_dssp             --------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBSSHHHHCH-----HH--HHH
T ss_pred             --------------------CCCcchHHHHHHHHHHHHHHHHHHhhcC-eEEEEEecCcccCccccch-----hh--hhh
Confidence                                01122777766544         21 24 9999999999987421100     00  000


Q ss_pred             HhhhCCCcee------eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          224 VCKHLNLPFV------FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       224 ~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      +......+..      +....    .....+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~pedvA~av~fL~s~~a~~-itG~~i~vdGG~~  314 (317)
T 3oec_A          255 FLPHLENPTREDAAELFSQLT----LLPIPWVEPEDVSNAVAWLASDEARY-IHGAAIPVDGGQL  314 (317)
T ss_dssp             HCTTCSSCCHHHHHHHHTTTC----SSSSSSBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTTGG
T ss_pred             hhhhccccchhHHHHHHhhhc----cCCCCCCCHHHHHHHHHHHcCCcccC-CCCCEEEECcchh
Confidence            0000000000      00000    00023668999999999987654322 4568999998854

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.68  E-value=1.2e-15  Score=128.90  Aligned_cols=215  Identities=15%  Similarity=0.092  Sum_probs=136.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT------L   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~------~   92 (303)
                      +.+|+++||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|++|.+++.++++      .
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLA-GAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            357899999999999999999999 68999999999876532       123568899999999988887776      4


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.++|.|+....    ..+..+....+++|+.++.++++++...  ..+..+++.+++...+.                
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~----------------  173 (275)
T 4imr_A          110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR----------------  173 (275)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------------
Confidence            5668888765322    2244555568999999999999988654  11233555555432221                


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGG  236 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  236 (303)
                        +   ..+...|+.+|...+         +. .+ +++..++||.+..+.......  ...........  ..      
T Consensus       174 --~---~~~~~~Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~--~~------  237 (275)
T 4imr_A          174 --P---KSVVTAYAATKAAQHNLIQSQARDFAGDN-VLLNTLAPGLVDTDRNADRRA--QDPEGWDEYVR--TL------  237 (275)
T ss_dssp             --C---CTTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSBCSHHHHHHHH--HCHHHHHHHHH--HH------
T ss_pred             --C---CCCchhhHHHHHHHHHHHHHHHHHhcccC-cEEEEEEeccccCcccccccc--cChHHHHHHHh--hc------
Confidence              0   111122777766544         22 23 999999999998631110000  00000000110  00      


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                            ..+..+.+++|+|.++++++...... ..|+.+++.+|
T Consensus       238 ------~p~~r~~~pedvA~~v~fL~s~~a~~-itG~~i~vdGG  274 (275)
T 4imr_A          238 ------NWMGRAGRPEEMVGAALFLASEACSF-MTGETIFLTGG  274 (275)
T ss_dssp             ------STTCSCBCGGGGHHHHHHHHSGGGTT-CCSCEEEESSC
T ss_pred             ------CccCCCcCHHHHHHHHHHHcCcccCC-CCCCEEEeCCC
Confidence                  01122557788999999988654322 44689988876

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.68  E-value=1.7e-15  Score=128.97  Aligned_cols=211  Identities=13%  Similarity=0.100  Sum_probs=135.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC-cccc--------ccCCCeEEEEecCCC----HHHHHHHHh-
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP-EITA--------IQSSSYCFISCDLLN----PLDIKRKLT-   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-~~~~--------~~~~~~~~~~~D~~~----~~~l~~~~~-   91 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++ ....        ....++.++.+|++|    .++++++++ 
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~-~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLH-QTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHH-HHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHH
Confidence            457899999999999999999999 6899999999987 4321        112468889999999    888877776 


Q ss_pred             ------ccCceeEEeecccc---------c-----CChHHHHHHHHHHHHHHHHHHHHHhhccCC--------ccEEEEe
Q 042242           92 ------LLEDVTHIFWVTWA---------S-----QFASDMHKCCEQNKAMMCNALNAILPRAKA--------LKHVSLQ  143 (303)
Q Consensus        92 ------~~~~V~~~~~~~~~---------~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--------~~~~~~~  143 (303)
                            .+|.++|.|+....         .     ....+..+.+++|+.++..+++++......        ..+++.+
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i  179 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL  179 (288)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence                  46778888765321         1     223344468899999999999988765211        2355555


Q ss_pred             ecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccc
Q 042242          144 TGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYN  213 (303)
Q Consensus       144 s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~  213 (303)
                      ++...+..                  ..+...   |+.+|...+         +. .+ +++.+++|+.++++. ...  
T Consensus       180 sS~~~~~~------------------~~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~t~~-~~~--  234 (288)
T 2x9g_A          180 CDAMVDQP------------------CMAFSL---YNMGKHALVGLTQSAALELAPYG-IRVNGVAPGVSLLPV-AMG--  234 (288)
T ss_dssp             CCTTTTSC------------------CTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSCSCCT-TSC--
T ss_pred             ecccccCC------------------CCCCch---HHHHHHHHHHHHHHHHHHhhccC-eEEEEEEeccccCcc-ccC--
Confidence            54322210                  000222   787775443         11 24 999999999999854 211  


Q ss_pred             hhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccC-ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          214 FLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDG-SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                        ...  ...+..  ..|+   +          .+ .+++++|.++++++...... ..|+.+++.++..
T Consensus       235 --~~~--~~~~~~--~~p~---~----------r~~~~pedvA~~v~~l~s~~~~~-itG~~i~vdGG~~  284 (288)
T 2x9g_A          235 --EEE--KDKWRR--KVPL---G----------RREASAEQIADAVIFLVSGSAQY-ITGSIIKVDGGLS  284 (288)
T ss_dssp             --HHH--HHHHHH--TCTT---T----------SSCCCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             --hHH--HHHHHh--hCCC---C----------CCCCCHHHHHHHHHHHhCccccC-ccCCEEEECcchh
Confidence              110  011111  1121   1          13 57899999999988654321 4468888888754

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.68  E-value=3.3e-15  Score=123.30  Aligned_cols=206  Identities=13%  Similarity=0.118  Sum_probs=132.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhc-------cCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTL-------LEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V   96 (303)
                      |+|+||||||++.||+++++.|+ +.|++|.+++|++....   .+..++..+++|++|.++++++++.       +|.+
T Consensus         1 MnK~vlVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiL   79 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFL-EAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVL   79 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67999999999999999999999 68999999999865532   2345788999999999988776653       4556


Q ss_pred             eEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           97 THIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        97 ~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      +|.|+...    .+.+.++..+.+++|+.++..+.+++... .++--.++.+++...+.+.                +. 
T Consensus        80 VNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~----------------~~-  142 (247)
T 3ged_A           80 VNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSE----------------PD-  142 (247)
T ss_dssp             EECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCC----------------TT-
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCC----------------CC-
Confidence            66654322    22344555668999999999888887665 1111344444432221100                00 


Q ss_pred             CCCccchHHHHHHHH---------HHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          172 SKSNNFYYVLEDLLK---------EKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       172 p~~~~~~y~~~k~~~---------e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                       ..+   |..+|...         |+.++ +++..+.||.|-.+....   +...      ...  ..|+.         
T Consensus       143 -~~~---Y~asKaal~~ltk~lA~ela~~-IrVN~I~PG~i~t~~~~~---~~~~------~~~--~~Pl~---------  197 (247)
T 3ged_A          143 -SEA---YASAKGGIVALTHALAMSLGPD-VLVNCIAPGWINVTEQQE---FTQE------DCA--AIPAG---------  197 (247)
T ss_dssp             -CHH---HHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSBCCCC------CCHH------HHH--TSTTS---------
T ss_pred             -CHH---HHHHHHHHHHHHHHHHHHHCCC-CEEEEEecCcCCCCCcHH---HHHH------HHh--cCCCC---------
Confidence             112   66655433         34444 999999999886532111   1011      001  22311         


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                          -+..++|+|.++++++.+..   ..|+.+.+.+|..
T Consensus       198 ----R~g~pediA~~v~fL~s~~~---iTG~~i~VDGG~s  230 (247)
T 3ged_A          198 ----KVGTPKDISNMVLFLCQQDF---ITGETIIVDGGMS  230 (247)
T ss_dssp             ----SCBCHHHHHHHHHHHHHCSS---CCSCEEEESTTGG
T ss_pred             ----CCcCHHHHHHHHHHHHhCCC---CCCCeEEECcCHH
Confidence                14577899999999986543   3458999988753

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.68  E-value=1.6e-15  Score=124.80  Aligned_cols=189  Identities=16%  Similarity=0.092  Sum_probs=124.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhcc----CceeEEe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTLL----EDVTHIF  100 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~----~~V~~~~  100 (303)
                      |+||||||+|+||++++++|+ ..|++|++++|++....    ....++.++.+|++|.++++++++.+    |.++|.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYD-AEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence            689999999999999999999 68999999999876532    12356889999999999999999876    4588887


Q ss_pred             ecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242          101 WVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus       101 ~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      +....    ..+..+..+.+++|+.++.++++++... ..+-.+++.+++...+...                  .+..+
T Consensus        81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------------~~~~~  142 (230)
T 3guy_A           81 GSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPK------------------AQEST  142 (230)
T ss_dssp             CCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCC------------------TTCHH
T ss_pred             CcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCC------------------CCCch
Confidence            65332    2234555568999999999999998765 2212255555543332110                  00223


Q ss_pred             cchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcc
Q 042242          176 NFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCL  246 (303)
Q Consensus       176 ~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  246 (303)
                         |+.+|...+        ..... +++..++||.+..+...       ..          ...           ....
T Consensus       143 ---Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~-------~~----------~~~-----------~~~~  191 (230)
T 3guy_A          143 ---YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWE-------TS----------GKS-----------LDTS  191 (230)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------------------
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHH-------hc----------CCC-----------CCcc
Confidence               777776554        11222 99999999988763111       00          000           0111


Q ss_pred             cCccHHHHHHHHHHHhcCcCC
Q 042242          247 DGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       247 ~~~~~~d~a~a~~~~~~~~~~  267 (303)
                      .+.+++|+|+++++++.++..
T Consensus       192 ~~~~~~dvA~~i~~l~~~~~~  212 (230)
T 3guy_A          192 SFMSAEDAALMIHGALANIGN  212 (230)
T ss_dssp             -CCCHHHHHHHHHHHCCEETT
T ss_pred             cCCCHHHHHHHHHHHHhCcCC
Confidence            256889999999998876643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.68  E-value=2.3e-15  Score=128.92  Aligned_cols=206  Identities=14%  Similarity=-0.015  Sum_probs=127.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      .+|+||||||+|+||++++++|+ +.|++|++++|+.....       ....++.++.+|++|.+++.++++       .
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFA-RRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            45899999999999999999999 68999999999876532       113468899999999999888776       4


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.++|.|+....    ..+..+..+.+++|+.++.++++++...   .....+++.+|+...+.+.             
T Consensus       109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------  175 (301)
T 3tjr_A          109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN-------------  175 (301)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC-------------
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC-------------
Confidence            5668888765432    2344555668999999999999998654   1112355555543232110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                              .....|+.+|...+         +. .+ +++.+++||.|..+.....    .....  ........+....
T Consensus       176 --------~~~~~Y~asKaa~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~~~----~~~~~--~~~~~~~~~~~~~  240 (301)
T 3tjr_A          176 --------AGLGTYGVAKYGVVGLAETLAREVKPNG-IGVSVLCPMVVETKLVSNS----ERIRG--ADYGMSATPEGAF  240 (301)
T ss_dssp             --------TTBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEECCSCCCSSHHHHH----HHHC----------------
T ss_pred             --------CCchHHHHHHHHHHHHHHHHHHHhcccC-cEEEEEECCcccccccccc----ccccc--hhhccccChhhhc
Confidence                    01122787776444         11 23 9999999999876311000    00000  0000001111111


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATND  265 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~  265 (303)
                      +..    .....+++++|+|++++.++..+
T Consensus       241 ~~~----~~~~~~~~pedvA~~i~~~l~~~  266 (301)
T 3tjr_A          241 GPL----PTQDESVSADDVARLTADAILAN  266 (301)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHT
T ss_pred             ccc----ccccCCCCHHHHHHHHHHHHhcC
Confidence            110    12234679999999999988765

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.68  E-value=3.2e-15  Score=125.76  Aligned_cols=212  Identities=16%  Similarity=0.107  Sum_probs=131.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      ++|++|||||+|+||++++++|+ +.|++|++++++.....        ....++.++.+|++|.++++++++       
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la-~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLA-SDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHH-HHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999 68999998866544321        113468889999999999888776       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      .+|.++|.|+....    .....+..+.+++|+.++.++++++.....+-.+++.+++...+...               
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------  169 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH---------------  169 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC---------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC---------------
Confidence            45668888765322    22344455688999999999999887652222345555443222110               


Q ss_pred             CCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          168 CPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                       +  ....   |+.+|...+     +   .... +++..++|+.+..+.......  ...  ...+..  ..|       
T Consensus       170 -~--~~~~---Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~--~~~~~~--~~p-------  230 (267)
T 3u5t_A          170 -P--SYGI---YAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKS--DEV--RDRFAK--LAP-------  230 (267)
T ss_dssp             -T--TCHH---HHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------C--HHHHHT--SST-------
T ss_pred             -C--CchH---HHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCC--HHH--HHHHHh--cCC-------
Confidence             0  0122   777776554     1   1122 999999999998742111000  000  000100  111       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                            +..+.+++|+|.++++++...... ..|+.+++.+|
T Consensus       231 ------~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~vdGG  265 (267)
T 3u5t_A          231 ------LERLGTPQDIAGAVAFLAGPDGAW-VNGQVLRANGG  265 (267)
T ss_dssp             ------TCSCBCHHHHHHHHHHHHSTTTTT-CCSEEEEESSS
T ss_pred             ------CCCCcCHHHHHHHHHHHhCccccC-ccCCEEEeCCC
Confidence                  223568899999999988654332 45689988876

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.67  E-value=1.2e-15  Score=128.83  Aligned_cols=191  Identities=13%  Similarity=0.008  Sum_probs=127.3

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------cCCCeEEEEecCCCHHHHHHHHh-----
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------QSSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      ..+++|+|+||||+|+||++++++|+ +.|++|++++|++.....       ...++.++.+|++|.+++.++++     
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999999 689999999998654320       13468899999999998888776     


Q ss_pred             --ccCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           92 --LLEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        92 --~~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        .+|.|+|+++.....    ....+..+.+++|+.++.++++++...  ..+..+++.+++...|...           
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-----------  174 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV-----------  174 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH-----------
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC-----------
Confidence              456788887654322    123344468899999988888877653  1233455555543333110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hhc--CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KLA--GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~~--~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                                .+...|+.+|...+         +..  .. ++++++||+.+.++....      .              
T Consensus       175 ----------~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~------~--------------  224 (272)
T 1yb1_A          175 ----------PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN------P--------------  224 (272)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC------T--------------
T ss_pred             ----------CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc------c--------------
Confidence                      01112777665443         110  22 999999999998742110      0              


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                               . ..+..+.+++|+|.+++.++..+.
T Consensus       225 ---------~-~~~~~~~~~~dva~~i~~~~~~~~  249 (272)
T 1yb1_A          225 ---------S-TSLGPTLEPEEVVNRLMHGILTEQ  249 (272)
T ss_dssp             ---------H-HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred             ---------c-ccccCCCCHHHHHHHHHHHHHcCC
Confidence                     0 111235688999999999887653

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.67  E-value=1.9e-15  Score=126.82  Aligned_cols=218  Identities=12%  Similarity=-0.002  Sum_probs=131.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHHh----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKLT----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~----   91 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|......          ....++.++.+|++|.++++++++    
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFA-LESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHT-TSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999 78999999987643211          113467889999999999888876    


Q ss_pred             ---ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 ---LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ---~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                         .+|.++|.|+....    ..+..+..+.+++|+.++..+++++.....+-.+++.+++...+....           
T Consensus        88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~-----------  156 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG-----------  156 (262)
T ss_dssp             HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHC-----------
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCC-----------
Confidence               35668888764322    223445556889999999999999887522233455554433331110           


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                           .  ...   |+.+|...+        ..... +++..++||.|..+......   ...          .......
T Consensus       157 -----~--~~~---Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~~~----------~~~~~~~  213 (262)
T 3ksu_A          157 -----F--YST---YAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQE---TKE----------STAFHKS  213 (262)
T ss_dssp             -----C--CCC--------CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC-----------------------
T ss_pred             -----C--Cch---hHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC---chH----------HHHHHHh
Confidence                 0  112   444333222        22222 99999999988753110000   000          0000000


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHH
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWK  286 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~  286 (303)
                      .      .....+.+++|+|.++++++.. .. ...|+.+++.++......
T Consensus       214 ~------~~~~r~~~pedvA~~v~~L~s~-~~-~itG~~i~vdGg~~~~~~  256 (262)
T 3ksu_A          214 Q------AMGNQLTKIEDIAPIIKFLTTD-GW-WINGQTIFANGGYTTREG  256 (262)
T ss_dssp             --------CCCCSCCGGGTHHHHHHHHTT-TT-TCCSCEEEESTTCCCC--
T ss_pred             c------CcccCCCCHHHHHHHHHHHcCC-CC-CccCCEEEECCCccCCCc
Confidence            0      1112356778899999998865 22 145689999888765443

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.66  E-value=1.3e-15  Score=127.94  Aligned_cols=157  Identities=12%  Similarity=0.066  Sum_probs=108.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++....     .  ...++.++.+|++|.+++.++++       
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            456899999999999999999999 68999999999865422     1  12367889999999998877776       


Q ss_pred             ccCceeEEeecc-c----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 LLEDVTHIFWVT-W----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 ~~~~V~~~~~~~-~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .+|.++|.++.. .    ...+..+..+.+++|+.++.++++++....  .+..+++.+++...+.+.            
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  151 (262)
T 1zem_A           84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP------------  151 (262)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC------------
T ss_pred             CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC------------
Confidence            456788887643 1    222344555689999999999999887641  123455555543232110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLG  205 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G  205 (303)
                          +  ....   |+.+|...+         +. .+ +++++++|+.+..
T Consensus       152 ----~--~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~vn~v~PG~v~t  192 (262)
T 1zem_A          152 ----P--NMAA---YGTSKGAIIALTETAALDLAPYN-IRVNAISPGYMGP  192 (262)
T ss_dssp             ----T--TBHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCS
T ss_pred             ----C--CCch---HHHHHHHHHHHHHHHHHHHHhhC-eEEEEEecCCcCc
Confidence                0  0112   777665433         22 23 9999999998865

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.66  E-value=3.2e-15  Score=123.35  Aligned_cols=190  Identities=12%  Similarity=-0.001  Sum_probs=124.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++|+||||||+|+||++++++|+ +.|++|++++|+.....    ....++.++.+|++|.++++++++.       +|.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   80 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLV-ERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPEL   80 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcE
Confidence            45899999999999999999999 68999999999875432    1122588999999999998887764       466


Q ss_pred             eeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           96 VTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        96 V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      ++|.|+....    ..+..+..+.+++|+.++..+++++.... .+-.+++.+++...+.+.                  
T Consensus        81 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------------  142 (235)
T 3l6e_A           81 VLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGK------------------  142 (235)
T ss_dssp             EEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSC------------------
T ss_pred             EEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCC------------------
Confidence            8888775322    23455556689999999999999886541 111245554442222110                  


Q ss_pred             CCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          171 VSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                         .....|+.+|...+        ..... +++..++||.+..+.....     .           ..+   .      
T Consensus       143 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-----~-----------~~~---~------  194 (235)
T 3l6e_A          143 ---ANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT-----D-----------HVD---P------  194 (235)
T ss_dssp             ---SSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------------
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhcc-----C-----------CCC---C------
Confidence               01122777776554        11122 9999999998876311100     0           000   0      


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                          ..+.+++|+|+++++++..+..
T Consensus       195 ----~~~~~pedvA~~v~~l~~~~~~  216 (235)
T 3l6e_A          195 ----SGFMTPEDAAAYMLDALEARSS  216 (235)
T ss_dssp             ------CBCHHHHHHHHHHHTCCCSS
T ss_pred             ----cCCCCHHHHHHHHHHHHhCCCC
Confidence                0256889999999999876543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.66  E-value=3.7e-15  Score=124.30  Aligned_cols=198  Identities=10%  Similarity=-0.041  Sum_probs=119.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++....       ....++.++.+|++|.++++++++.      
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFA-AEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            356899999999999999999999 68999999999876532       1134688999999999999888874      


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.++|.|+....    ..+..+..+.+++|+.++..+++++....  .+..+++.+++...+.+.              
T Consensus        84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------  149 (252)
T 3h7a_A           84 LEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGG--------------  149 (252)
T ss_dssp             EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCC--------------
T ss_pred             ceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCC--------------
Confidence            4668888765332    23445556689999999999988876541  112234444432222110              


Q ss_pred             CCCCCCCCccchHHHHHHHHH---------Hh-cCCcce-EEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAW-SVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~-~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                          .....   |+.+|...+         +. .+ +++ .+++||.+..+......   ...      ..    . ...
T Consensus       150 ----~~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~v~n~v~PG~v~T~~~~~~~---~~~------~~----~-~~~  207 (252)
T 3h7a_A          150 ----SGFAA---FASAKFGLRAVAQSMARELMPKN-IHVAHLIIDSGVDTAWVRERR---EQM------FG----K-DAL  207 (252)
T ss_dssp             ----TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEEC-----------------------------------
T ss_pred             ----CCCcc---HHHHHHHHHHHHHHHHHHhhhcC-CEEEEEecCCccCChhhhccc---hhh------hh----h-hhh
Confidence                00222   777765444         22 23 888 89999988763221110   000      00    0 000


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                      .      .... +.+++|+|.++++++..+..
T Consensus       208 ~------~~~~-~~~pedvA~~~~~l~s~~~~  232 (252)
T 3h7a_A          208 A------NPDL-LMPPAAVAGAYWQLYQQPKS  232 (252)
T ss_dssp             -------------CCHHHHHHHHHHHHHCCGG
T ss_pred             c------CCcc-CCCHHHHHHHHHHHHhCchh
Confidence            0      1111 66889999999999876644

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.66  E-value=7e-15  Score=127.32  Aligned_cols=211  Identities=13%  Similarity=0.093  Sum_probs=135.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe-cCCcccc-----c---cCCCeEEEEecCCCHH-------------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIA-RKPEITA-----I---QSSSYCFISCDLLNPL-------------   84 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~-r~~~~~~-----~---~~~~~~~~~~D~~~~~-------------   84 (303)
                      ++|+||||||+|+||++++++|+ ..|++|++++ |++....     .   ...++.++.+|++|.+             
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La-~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~  123 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLH-AEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV  123 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccccc
Confidence            45899999999999999999999 6899999999 8754321     1   1246888999999988             


Q ss_pred             ----HHHHHHh-------ccCceeEEeecccc----cCC--------------hHHHHHHHHHHHHHHHHHHHHHhhc--
Q 042242           85 ----DIKRKLT-------LLEDVTHIFWVTWA----SQF--------------ASDMHKCCEQNKAMMCNALNAILPR--  133 (303)
Q Consensus        85 ----~l~~~~~-------~~~~V~~~~~~~~~----~~~--------------~~~~~~~~~~n~~~~~~ll~~~~~~--  133 (303)
                          +++++++       .+|.++|.|+....    ...              ..+....+++|+.++..+++++...  
T Consensus       124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~  203 (328)
T 2qhx_A          124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  203 (328)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                8887776       45678888765321    112              3444568899999999999988754  


Q ss_pred             cCC------ccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEE
Q 042242          134 AKA------LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSV  197 (303)
Q Consensus       134 ~~~------~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~i  197 (303)
                      ...      ..+++.+++...+...                  .+..+   |+.+|...+         +. .+ +++++
T Consensus       204 ~~~~~~~~~~g~IV~isS~~~~~~~------------------~~~~~---Y~asKaal~~l~~~la~el~~~g-Irvn~  261 (328)
T 2qhx_A          204 GTPAKHRGTNYSIINMVDAMTNQPL------------------LGYTI---YTMAKGALEGLTRSAALELAPLQ-IRVNG  261 (328)
T ss_dssp             HSCGGGSCSCEEEEEECCTTTTSCC------------------TTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEE
T ss_pred             hcCCcCCCCCcEEEEECchhhccCC------------------CCcHH---HHHHHHHHHHHHHHHHHHHhhcC-cEEEE
Confidence            111      3456665543222100                  00122   777666544         11 23 99999


Q ss_pred             ecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEe
Q 042242          198 HRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNA  277 (303)
Q Consensus       198 lRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni  277 (303)
                      ++|+.|..+. . ..   ...  ...+..  ..|+  .          ..+.+++|+|.++++++...... ..|+.+++
T Consensus       262 v~PG~v~T~~-~-~~---~~~--~~~~~~--~~p~--~----------~r~~~pedvA~~v~~l~s~~~~~-itG~~i~v  319 (328)
T 2qhx_A          262 VGPGLSVLVD-D-MP---PAV--WEGHRS--KVPL--Y----------QRDSSAAEVSDVVIFLCSSKAKY-ITGTCVKV  319 (328)
T ss_dssp             EEESSBSCCC-C-SC---HHH--HHHHHT--TCTT--T----------TSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEE
T ss_pred             EecCcccCCc-c-cc---HHH--HHHHHh--hCCC--C----------CCCCCHHHHHHHHHHHhCccccC-ccCcEEEE
Confidence            9999998854 1 11   111  011111  1121  0          02557899999999988643221 34688999


Q ss_pred             ecCCC
Q 042242          278 INGPR  282 (303)
Q Consensus       278 ~~~~~  282 (303)
                      .++..
T Consensus       320 dGG~~  324 (328)
T 2qhx_A          320 DGGYS  324 (328)
T ss_dssp             STTGG
T ss_pred             CCCcc
Confidence            88754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.65  E-value=5.2e-15  Score=124.15  Aligned_cols=197  Identities=13%  Similarity=0.069  Sum_probs=123.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHh-------c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLT-------L   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~-------~   92 (303)
                      ++|++|||||+|+||++++++|+ +.|++|++++|+.....       ....++.++.+|++|.++++++++       .
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELG-VAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999 68999999999865432       113467788999999998888776       4


Q ss_pred             cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCc
Q 042242           93 LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        93 ~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      +|.++|.|+....    ..+..+....+++|+.++..+++++...  ..+..+++.+++...+.+.              
T Consensus        82 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~--------------  147 (264)
T 3tfo_A           82 IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVV--------------  147 (264)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC--------------
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccC--------------
Confidence            5668888765322    2234555568999999999888887654  1122345555543232110              


Q ss_pred             CCCCCCCCccchHHHHHHHHH--------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE--------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e--------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                          .....   |+.+|...+        ...+ +++..++||.|..+......   ...          ... . ..  
T Consensus       148 ----~~~~~---Y~asKaal~~l~~~la~e~~g-Irvn~v~PG~v~T~~~~~~~---~~~----------~~~-~-~~--  202 (264)
T 3tfo_A          148 ----PTAAV---YCATKFAVRAISDGLRQESTN-IRVTCVNPGVVESELAGTIT---HEE----------TMA-A-MD--  202 (264)
T ss_dssp             ----TTCHH---HHHHHHHHHHHHHHHHHHCSS-EEEEEEEECCC-----------------------------------
T ss_pred             ----CCChh---HHHHHHHHHHHHHHHHHhCCC-CEEEEEecCCCcCccccccc---chh----------HHH-H-HH--
Confidence                00122   777766444        1124 99999999998774211100   000          000 0 00  


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                          .......+++|+|+++++++..+..
T Consensus       203 ----~~~~~~~~pedvA~~v~~l~s~~~~  227 (264)
T 3tfo_A          203 ----TYRAIALQPADIARAVRQVIEAPQS  227 (264)
T ss_dssp             ---------CCCHHHHHHHHHHHHHSCTT
T ss_pred             ----hhhccCCCHHHHHHHHHHHhcCCcc
Confidence                0000135789999999999887754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.64  E-value=3.1e-15  Score=126.86  Aligned_cols=219  Identities=14%  Similarity=0.055  Sum_probs=134.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      +++|++|||||+|+||++++++|+ +.|++|++++|+.....    ....++.++.+|++|.+++.++++.       +|
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFV-AEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKID   81 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            356899999999999999999999 68999999999865432    1234688999999999988877764       46


Q ss_pred             ceeEEeecccccC---------ChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCc
Q 042242           95 DVTHIFWVTWASQ---------FASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        95 ~V~~~~~~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      .++|.|+......         ........+++|+.++..+++++.... .+-.+++.+++...+..             
T Consensus        82 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------  148 (281)
T 3zv4_A           82 TLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYP-------------  148 (281)
T ss_dssp             EEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSS-------------
T ss_pred             EEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccC-------------
Confidence            6888876432111         112234578999999999999987641 11134444444222210             


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCcc-chhhH----HHHHHHHhhhCCC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLY-NFLGC----LCVYGAVCKHLNL  230 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~----~~~~~~~~~~~~~  230 (303)
                              ......|+.+|...+         +... +++..++||.+..+-..... .....    ......+..  ..
T Consensus       149 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~-Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  217 (281)
T 3zv4_A          149 --------NGGGPLYTATKHAVVGLVRQMAFELAPH-VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS--VL  217 (281)
T ss_dssp             --------SSSCHHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH--TC
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHhcCC-CEEEEEECCcCcCCcccccccccccccccchhHHHHHHh--cC
Confidence                    001122777766554         2234 99999999999874321110 00000    000000110  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                   .+..+.+++|+|.++++++..+......|+.+++.+|..
T Consensus       218 -------------p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~  256 (281)
T 3zv4_A          218 -------------PIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMG  256 (281)
T ss_dssp             -------------TTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGG
T ss_pred             -------------CCCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCc
Confidence                         122356778899999998874443324568999988754

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.64  E-value=1.4e-14  Score=122.95  Aligned_cols=204  Identities=10%  Similarity=0.007  Sum_probs=132.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------------ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------------IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------------~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|+..+..              ....++.++++|++|.++++++++
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVA-ADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-TTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            356899999999999999999999 68999999999876311              113468889999999999888776


Q ss_pred             -------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcc
Q 042242           92 -------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        92 -------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                             .+|.++|.|+....    ..+..+..+.+++|+.++..+++++....  .+..+++.+++...+...      
T Consensus        86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------  159 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK------  159 (285)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC------
Confidence                   45668888765432    23344555688999999999999988762  233456655543222110      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  228 (303)
                                 ..+...   |+.+|...+         +. .+ +++..++|+.+..  +  .+  ...      ... .
T Consensus       160 -----------~~~~~~---Y~asKaal~~~~~~la~e~~~~g-I~vn~v~PG~~v~--t--~~--~~~------~~~-~  211 (285)
T 3sc4_A          160 -----------WLRPTP---YMMAKYGMTLCALGIAEELRDAG-IASNTLWPRTTVA--T--AA--VQN------LLG-G  211 (285)
T ss_dssp             -----------GSCSHH---HHHHHHHHHHHHHHHHHHTGGGT-CEEEEEECSSCBC--C--HH--HHH------HHT-S
T ss_pred             -----------CCCCch---HHHHHHHHHHHHHHHHHHhcccC-cEEEEEeCCCccc--c--HH--HHh------hcc-c
Confidence                       000122   777766544         11 23 9999999984332  1  10  001      000 0


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeec
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAIN  279 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~  279 (303)
                      ..+             +..+.+++|+|.++++++..+..  ..|+.+.+.+
T Consensus       212 ~~~-------------~~r~~~pedvA~~~~~l~s~~~~--~tG~~i~~dg  247 (285)
T 3sc4_A          212 DEA-------------MARSRKPEVYADAAYVVLNKPSS--YTGNTLLCED  247 (285)
T ss_dssp             CCC-------------CTTCBCTHHHHHHHHHHHTSCTT--CCSCEEEHHH
T ss_pred             ccc-------------ccCCCCHHHHHHHHHHHhCCccc--ccceEEEEcC
Confidence            111             11255788999999999877652  3457666554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.63  E-value=4.7e-15  Score=125.03  Aligned_cols=209  Identities=15%  Similarity=0.139  Sum_probs=128.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----cc-CCCeEEEEecCCCHHHHHHHHhcc-------C
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQ-SSSYCFISCDLLNPLDIKRKLTLL-------E   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~-~~~~~~~~~D~~~~~~l~~~~~~~-------~   94 (303)
                      .|++|||||+|+||++++++|+ +.|++|++++|++.+..     .. ..++.++.+|++|.++++++++.+       |
T Consensus        21 ~k~vlVTGas~gIG~aia~~La-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   99 (272)
T 2nwq_A           21 SSTLFITGATSGFGEACARRFA-EAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLR   99 (272)
T ss_dssp             CCEEEESSTTTSSHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCC
T ss_pred             CcEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            3899999999999999999999 68999999999865432     11 136888999999999999998765       5


Q ss_pred             ceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCcc-EEEEeecccccccccCCCcccccCCcCc
Q 042242           95 DVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALK-HVSLQTGMKHYVSLQGLPEEKQVRFYDE  166 (303)
Q Consensus        95 ~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~-~~~~~s~~~~y~~~~~~~g~~~~~~~~e  166 (303)
                      .++|.++...     ...+..+..+.+++|+.++..+++++....  .+.. +++.+++...+...              
T Consensus       100 ~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~--------------  165 (272)
T 2nwq_A          100 GLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPY--------------  165 (272)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCC--------------
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCC--------------
Confidence            6888876432     122345555689999999888888776431  1123 55555543222100              


Q ss_pred             CCCCCCCCccchHHHHHHHHH-----Hhc---CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          167 ECPRVSKSNNFYYVLEDLLKE-----KLA---GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       167 ~~~~~p~~~~~~y~~~k~~~e-----~~~---~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                          .+...   |+.+|...+     +..   .. +++++++|+.+.++......   ....  ...     .. .... 
T Consensus       166 ----~~~~~---Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~---~~~~--~~~-----~~-~~~~-  226 (272)
T 2nwq_A          166 ----PGSHV---YGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRF---GGDQ--ARY-----DK-TYAG-  226 (272)
T ss_dssp             ----TTCHH---HHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-------------------------------C-
T ss_pred             ----CCCch---HHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhccc---ccch--HHH-----HH-hhcc-
Confidence                00122   777776555     211   22 99999999999874211100   0000  000     00 0000 


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                              ....+++|+|.++++++..+..  ..|+.+.+.++
T Consensus       227 --------~~~~~pedvA~~v~~l~s~~~~--~~g~~i~v~~~  259 (272)
T 2nwq_A          227 --------AHPIQPEDIAETIFWIMNQPAH--LNINSLEIMPV  259 (272)
T ss_dssp             --------CCCBCHHHHHHHHHHHHTSCTT--EEEEEEEEEET
T ss_pred             --------CCCCCHHHHHHHHHHHhCCCcc--CccceEEEeec
Confidence                    1135889999999999876543  22456666654

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.63  E-value=3.8e-14  Score=116.25  Aligned_cols=215  Identities=10%  Similarity=0.042  Sum_probs=134.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhcc---CceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLL---EDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~---~~V~~~~~  101 (303)
                      +.+|+++||||++.||+.+++.|+ +.|++|++++|+.+... ....++..+++|++|.++++++++..   |.++|.|+
T Consensus         9 f~GK~alVTGas~GIG~aia~~la-~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG   87 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFA-ELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG   87 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            468999999999999999999999 68999999999876643 33457889999999999998888765   44666655


Q ss_pred             ccc--ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242          102 VTW--ASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus       102 ~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      ...  ...+..+..+.+++|+.++..+.+++..+. .+--.++.+++...+.+.                +.  ...   
T Consensus        88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~----------------~~--~~~---  146 (242)
T 4b79_A           88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGS----------------AD--RPA---  146 (242)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCC----------------SS--CHH---
T ss_pred             CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCC----------------CC--CHH---
Confidence            432  222344555689999999998888876651 111234444332111000                00  112   


Q ss_pred             HHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          179 YVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       179 y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                      |..+|....         +....+++..+.|+.|..+-......   .......+.+  ..|+.             .+-
T Consensus       147 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~---~~~~~~~~~~--~~Plg-------------R~g  208 (242)
T 4b79_A          147 YSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKA---DVEATRRIMQ--RTPLA-------------RWG  208 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CC---CHHHHHHHHH--TCTTC-------------SCB
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccC---CHHHHHHHHh--cCCCC-------------CCc
Confidence            776555332         33222999999999997642211100   0011111111  22321             245


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      .++|+|.++++++..... ...|+.+.+.+|.
T Consensus       209 ~peeiA~~v~fLaSd~a~-~iTG~~l~VDGG~  239 (242)
T 4b79_A          209 EAPEVASAAAFLCGPGAS-FVTGAVLAVDGGY  239 (242)
T ss_dssp             CHHHHHHHHHHHTSGGGT-TCCSCEEEESTTG
T ss_pred             CHHHHHHHHHHHhCchhc-CccCceEEECccH
Confidence            778999999988755432 2456888888774

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.63  E-value=1.1e-14  Score=122.49  Aligned_cols=216  Identities=10%  Similarity=0.005  Sum_probs=137.3

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhcc-
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTLL-   93 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~~-   93 (303)
                      .++|+|+||||+  |+||++++++|+ +.|++|++++|+..+..         ....++.++++|++|.++++++++.+ 
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~-~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCA-EMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVV   96 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHH-HTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHH-HCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHH
Confidence            457899999999  899999999999 68999999998865431         11346888999999999988877654 


Q ss_pred             ------CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCccccc
Q 042242           94 ------EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        94 ------~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                            |.++|.|+....    ..+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...         
T Consensus        97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------  167 (267)
T 3gdg_A           97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN---------  167 (267)
T ss_dssp             HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC---------
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC---------
Confidence                  668888765432    2244555668999999999999988543  1122345554443222110         


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH-----Hh--cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE-----KL--AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~--~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                        .    + .+..+   |+.+|...+     +.  ... +++..+.|+.+..+.....    ... ....+..  ..|  
T Consensus       168 --~----~-~~~~~---Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~----~~~-~~~~~~~--~~~--  228 (267)
T 3gdg_A          168 --F----P-QEQTS---YNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV----PKE-TQQLWHS--MIP--  228 (267)
T ss_dssp             --S----S-SCCHH---HHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS----CHH-HHHHHHT--TST--
T ss_pred             --C----C-CCCCc---chHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC----CHH-HHHHHHh--cCC--
Confidence              0    0 00223   887776554     11  122 7899999999876321111    110 0001111  111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 ...+.+++|+|.++++++...... ..|+.+++.+|..
T Consensus       229 -----------~~r~~~~~dva~~~~~l~s~~~~~-itG~~i~vdgG~~  265 (267)
T 3gdg_A          229 -----------MGRDGLAKELKGAYVYFASDASTY-TTGADLLIDGGYT  265 (267)
T ss_dssp             -----------TSSCEETHHHHHHHHHHHSTTCTT-CCSCEEEESTTGG
T ss_pred             -----------CCCCcCHHHHHhHhheeecCcccc-ccCCEEEECCcee
Confidence                       122557889999999888654322 4568999988754

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.63  E-value=7.2e-15  Score=122.19  Aligned_cols=157  Identities=17%  Similarity=0.140  Sum_probs=109.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++.+..     .  ...++.++.+|++|.++++++++       
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALA-AEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999 68999999999865432     0  12468889999999998887776       


Q ss_pred             ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcC
Q 042242           92 LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        92 ~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .+|.++|.++....    ..+..+..+.+++|+.++.++++++....  .+ .+++.+++...+.+.             
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------------  149 (247)
T 2jah_A           84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNV-------------  149 (247)
T ss_dssp             CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCC-------------
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCC-------------
Confidence            46668888765322    22344555689999999999999887641  12 456655543232110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeec
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~  206 (303)
                         +  +...   |+.+|...+         .. .+ +++++++|+.+.++
T Consensus       150 ---~--~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~  191 (247)
T 2jah_A          150 ---R--NAAV---YQATKFGVNAFSETLRQEVTERG-VRVVVIEPGTTDTE  191 (247)
T ss_dssp             ---T--TCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECSBSSS
T ss_pred             ---C--CCcH---HHHHHHHHHHHHHHHHHHhcccC-cEEEEEECCCCCCc
Confidence               0  0122   777665433         22 24 99999999999874

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.62  E-value=4.1e-14  Score=119.46  Aligned_cols=200  Identities=14%  Similarity=0.119  Sum_probs=127.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------------ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------------IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------------~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      +++|+++||||+|.||++++++|+ +.|++|++++|+..+..              ....++.++.+|++|.++++++++
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   82 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAA-RDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA   82 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence            457899999999999999999999 68999999999875421              013467889999999998888776


Q ss_pred             -------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcc
Q 042242           92 -------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        92 -------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                             .+|.++|.|+....    ..+..+..+.+++|+.++..+++++...  ..+-.+++.+++...+...      
T Consensus        83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------  156 (274)
T 3e03_A           83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA------  156 (274)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH------
T ss_pred             HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------
Confidence                   45668888765322    2334455568999999999999998764  1223455555543222110      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhC
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHL  228 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  228 (303)
                          +      ..+...   |+.+|...+         +. .+ +++..++|+.+...  ... .   .      ..   
T Consensus       157 ----~------~~~~~~---Y~asKaal~~l~~~la~e~~~~g-I~vn~v~PG~~v~T--~~~-~---~------~~---  207 (274)
T 3e03_A          157 ----W------WGAHTG---YTLAKMGMSLVTLGLAAEFGPQG-VAINALWPRTVIAT--DAI-N---M------LP---  207 (274)
T ss_dssp             ----H------HHHCHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEECSBCBCC----------------------
T ss_pred             ----C------CCCCch---HHHHHHHHHHHHHHHHHHhhhcC-EEEEEEECCccccc--chh-h---h------cc---
Confidence                0      000122   777766544         22 23 99999999854431  100 0   0      00   


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceE
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAF  275 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~y  275 (303)
                      ..+             ...+.+++|+|.++++++...... ..|+.+
T Consensus       208 ~~~-------------~~~~~~pedvA~~v~~l~s~~~~~-itG~~i  240 (274)
T 3e03_A          208 GVD-------------AAACRRPEIMADAAHAVLTREAAG-FHGQFL  240 (274)
T ss_dssp             CCC-------------GGGSBCTHHHHHHHHHHHTSCCTT-CCSCEE
T ss_pred             ccc-------------ccccCCHHHHHHHHHHHhCccccc-cCCeEE
Confidence            111             111557889999999988654332 345666

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.62  E-value=6.3e-15  Score=124.87  Aligned_cols=199  Identities=11%  Similarity=0.058  Sum_probs=125.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +.+|+||||||+|+||++++++|+ +.|++|++++|++.....        ....+.++++|++|.++++++++.     
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALS-AEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF  109 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            357899999999999999999999 689999999998754321        012358899999999998887764     


Q ss_pred             --cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhcc--C--CccEEEEeecccccccccCCCccccc
Q 042242           93 --LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPRA--K--ALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        93 --~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~--~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                        +|.++|.|+....     ..+..+..+.+++|+.++..+++++....  .  .-.+++.+++...+.+          
T Consensus       110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~----------  179 (281)
T 4dry_A          110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP----------  179 (281)
T ss_dssp             SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC----------
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC----------
Confidence              4668888765322     23445556689999999988888876651  1  1235555554322210          


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                              ..+...   |+.+|...+         .. .+ +++..++|+.|..+......    .             .
T Consensus       180 --------~~~~~~---Y~asKaa~~~l~~~la~e~~~~g-I~vn~v~PG~v~T~~~~~~~----~-------------~  230 (281)
T 4dry_A          180 --------RPNSAP---YTATKHAITGLTKSTALDGRMHD-IACGQIDIGNAATDMTARMS----T-------------G  230 (281)
T ss_dssp             --------CTTCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEEECBCC-----------C-------------E
T ss_pred             --------CCCChh---HHHHHHHHHHHHHHHHHHhcccC-eEEEEEEECcCcChhhhhhc----c-------------h
Confidence                    001223   777766544         11 23 99999999988763211100    0             0


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCc
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDIS  268 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~  268 (303)
                      ..... ..   .....+.+++|+|.++++++..+...
T Consensus       231 ~~~~~-~~---~~~~~~~~pedvA~~v~fL~s~~~~~  263 (281)
T 4dry_A          231 VLQAN-GE---VAAEPTIPIEHIAEAVVYMASLPLSA  263 (281)
T ss_dssp             EECTT-SC---EEECCCBCHHHHHHHHHHHHHSCTTE
T ss_pred             hhhhh-hc---ccccCCCCHHHHHHHHHHHhCCCccC
Confidence            00000 00   11223568899999999999877543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.62  E-value=2.6e-14  Score=121.78  Aligned_cols=213  Identities=12%  Similarity=0.077  Sum_probs=135.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe-cCCcccc-----c---cCCCeEEEEecCCCHH------------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIA-RKPEITA-----I---QSSSYCFISCDLLNPL------------   84 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~-r~~~~~~-----~---~~~~~~~~~~D~~~~~------------   84 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++ |++....     .   ...++.++++|++|.+            
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLH-AEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP   85 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccc
Confidence            346899999999999999999999 6899999999 8754321     1   1246888999999998            


Q ss_pred             -----HHHHHHh-------ccCceeEEeecccc----cCC--------------hHHHHHHHHHHHHHHHHHHHHHhhc-
Q 042242           85 -----DIKRKLT-------LLEDVTHIFWVTWA----SQF--------------ASDMHKCCEQNKAMMCNALNAILPR-  133 (303)
Q Consensus        85 -----~l~~~~~-------~~~~V~~~~~~~~~----~~~--------------~~~~~~~~~~n~~~~~~ll~~~~~~-  133 (303)
                           ++.++++       .+|.++|.|+....    ...              .......+++|+.++..+++++... 
T Consensus        86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m  165 (291)
T 1e7w_A           86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  165 (291)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                 8887776       45668888765321    112              3444568899999999999988754 


Q ss_pred             -cCC------ccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceE
Q 042242          134 -AKA------LKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWS  196 (303)
Q Consensus       134 -~~~------~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~  196 (303)
                       ..+      ..+++.+++...+..                     ......|+.+|...+         +. .+ +++.
T Consensus       166 ~~~~~~~~~~~g~Iv~isS~~~~~~---------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~g-I~vn  223 (291)
T 1e7w_A          166 AGTPAKHRGTNYSIINMVDAMTNQP---------------------LLGYTIYTMAKGALEGLTRSAALELAPLQ-IRVN  223 (291)
T ss_dssp             HTSCGGGSCSCEEEEEECCTTTTSC---------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGT-EEEE
T ss_pred             HhcCCCCCCCCcEEEEEechhhcCC---------------------CCCCchhHHHHHHHHHHHHHHHHHHHhcC-eEEE
Confidence             112      345666555323211                     001122777766544         11 23 9999


Q ss_pred             EecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEE
Q 042242          197 VHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFN  276 (303)
Q Consensus       197 ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yn  276 (303)
                      .++|+.+..+. .  ..  ...  ...+..  ..|+  .+          .+.+++|+|.++++++...... ..|+.++
T Consensus       224 ~v~PG~v~T~~-~--~~--~~~--~~~~~~--~~p~--~~----------r~~~pedvA~~v~~l~s~~~~~-itG~~i~  281 (291)
T 1e7w_A          224 GVGPGLSVLVD-D--MP--PAV--WEGHRS--KVPL--YQ----------RDSSAAEVSDVVIFLCSSKAKY-ITGTCVK  281 (291)
T ss_dssp             EEEESSBCCGG-G--SC--HHH--HHHHHT--TCTT--TT----------SCBCHHHHHHHHHHHHSGGGTT-CCSCEEE
T ss_pred             EEeeCCccCCc-c--CC--HHH--HHHHHh--hCCC--CC----------CCCCHHHHHHHHHHHhCCcccC-ccCcEEE
Confidence            99999987642 1  10  111  011111  1111  00          2457899999999988654321 3468898


Q ss_pred             eecCCCc
Q 042242          277 AINGPRF  283 (303)
Q Consensus       277 i~~~~~~  283 (303)
                      +.++..+
T Consensus       282 vdGG~~~  288 (291)
T 1e7w_A          282 VDGGYSL  288 (291)
T ss_dssp             ESTTGGG
T ss_pred             ECCCccc
Confidence            8887543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.62  E-value=9.5e-15  Score=121.99  Aligned_cols=211  Identities=13%  Similarity=0.017  Sum_probs=126.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHH----HHhccCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKR----KLTLLEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~----~~~~~~~V~~   98 (303)
                      |+|+||||+|+||++++++|+ +.|++|++++|++.+...      ...++..+  |..+.+.+.+    .+..+|.++|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~lv~   78 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLS-EAGHTVACHDESFKQKDELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVLVS   78 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHH-HTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEEEE
Confidence            689999999999999999999 689999999998654321      01233333  5555443222    2235677899


Q ss_pred             Eeecc-c----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           99 IFWVT-W----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        99 ~~~~~-~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      .|+.. .    ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+...                  .
T Consensus        79 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~  140 (254)
T 1zmt_A           79 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW------------------K  140 (254)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC------------------T
T ss_pred             CCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCC------------------C
Confidence            87654 2    12234455568999999999999988654  1122355555543222110                  0


Q ss_pred             CCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHH----HH-HHHhhhCCCceeeCC
Q 042242          172 SKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLC----VY-GAVCKHLNLPFVFGG  236 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~g  236 (303)
                      +...   |+.+|...+         +. .+ +++++++|+.++|+.......  ..+.    .. ..+..  .       
T Consensus       141 ~~~~---Y~~sK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~~~~~~~~~~--T~~~~~~~~~~~~~~~--~-------  205 (254)
T 1zmt_A          141 ELST---YTSARAGACTLANALSKELGEYN-IPVFAIGPNYLHSEDSPYFYP--TEPWKTNPEHVAHVKK--V-------  205 (254)
T ss_dssp             TCHH---HHHHHHHHHHHHHHHHHHHGGGT-CCEEEEEESSBCCBTCCSSCB--HHHHTTCHHHHHHHHH--H-------
T ss_pred             CchH---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEecCccccccccccCC--CcccccChHHHHHHhc--c-------
Confidence            0122   777766544         11 23 999999999998864332211  1110    00 00000  0       


Q ss_pred             chhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          237 TREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       237 ~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                            ..+..+.+++|+|.++++++..+... ..|+.+++.++..
T Consensus       206 ------~p~~~~~~p~dvA~~v~~l~s~~~~~-~tG~~~~vdgG~~  244 (254)
T 1zmt_A          206 ------TALQRLGTQKELGELVAFLASGSCDY-LTGQVFWLAGGFP  244 (254)
T ss_dssp             ------SSSSSCBCHHHHHHHHHHHHTTSCGG-GTTCEEEESTTCC
T ss_pred             ------CCCCCCcCHHHHHHHHHHHhCcccCC-ccCCEEEECCCch
Confidence                  11112568899999999988654322 3468999988754

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=4e-15  Score=123.97  Aligned_cols=191  Identities=12%  Similarity=0.033  Sum_probs=124.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc----------cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI----------QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      .++|++|||||+|+||++++++|+ +.|++|++++|+..+...          ...++.++.+|++|.+++.++++.   
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLA-TDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHH-HHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            356899999999999999999999 679999999998754320          115688999999999988887764   


Q ss_pred             ----cCceeEEeecccc---cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 ----LEDVTHIFWVTWA---SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ----~~~V~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                          +|.++|.|+....   ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+.+            
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------  151 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYG------------  151 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCC------------
Confidence                4668888765322   2233445568999999999999988653  112234444443222200            


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            ..+...   |+.+|...+         +. .+ +++..++||.+..+.   .    ..          ....  
T Consensus       152 ------~~~~~~---Y~asKaa~~~l~~~la~e~~~~g-i~vn~v~PG~v~T~~---~----~~----------~~~~--  202 (250)
T 3nyw_A          152 ------FADGGI---YGSTKFALLGLAESLYRELAPLG-IRVTTLCPGWVNTDM---A----KK----------AGTP--  202 (250)
T ss_dssp             -------CCTTH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSBCSHH---H----HH----------TTCC--
T ss_pred             ------CCCCcc---hHHHHHHHHHHHHHHHHHhhhcC-cEEEEEecCcccCch---h----hh----------cCCC--
Confidence                  001223   777766443         22 23 999999999886521   0    00          0111  


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDI  267 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~  267 (303)
                               .....+.+++|+|.++++++..+..
T Consensus       203 ---------~~~~~~~~p~dva~~v~~l~s~~~~  227 (250)
T 3nyw_A          203 ---------FKDEEMIQPDDLLNTIRCLLNLSEN  227 (250)
T ss_dssp             ---------SCGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred             ---------cccccCCCHHHHHHHHHHHHcCCCc
Confidence                     0111256889999999999886654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.1e-14  Score=123.61  Aligned_cols=213  Identities=16%  Similarity=0.103  Sum_probs=134.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC---eEEEEecCCccccc---------cCCCeEEEEecCCCHHHHHHHHhc--
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW---KVYGIARKPEITAI---------QSSSYCFISCDLLNPLDIKRKLTL--   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~l~~~~~~--   92 (303)
                      .+|+||||||+|+||++++++|+ +.|+   +|++++|+......         ...++.++.+|++|.++++++++.  
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~-~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYL-EASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             CCCEEEEecCCChHHHHHHHHHH-HcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998 5666   99999998654320         134678899999999999998875  


Q ss_pred             -----cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccc
Q 042242           93 -----LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 -----~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                           +|.++|.|+...     ...+..+..+.+++|+.++.++++++...  ..+..+++.+++...+.+.        
T Consensus       111 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~--------  182 (287)
T 3rku_A          111 QEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAY--------  182 (287)
T ss_dssp             GGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC--------
T ss_pred             HhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCC--------
Confidence                 455888876432     12244555668999999999999998543  1122345554443222110        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                                ....+   |+.+|...+     +   .... +++..++||.|..+.......  ..........      
T Consensus       183 ----------~~~~~---Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~------  241 (287)
T 3rku_A          183 ----------PTGSI---YCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYR--GNEEQAKNVY------  241 (287)
T ss_dssp             ----------TTCHH---HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTT--TCHHHHHHHH------
T ss_pred             ----------CCCch---HHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcccccccc--CcHHHHHHhh------
Confidence                      00223   777766554     1   1122 999999999998731000000  0000000000      


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                  ......+++|+|.++++++..+... ..|+++++.+++.
T Consensus       242 ------------~~~~p~~pedvA~~v~~l~s~~~~~-i~g~~i~v~~g~~  279 (287)
T 3rku_A          242 ------------KDTTPLMADDVADLIVYATSRKQNT-VIADTLIFPTNQA  279 (287)
T ss_dssp             ------------TTSCCEEHHHHHHHHHHHHTSCTTE-EEEEEEEEETTEE
T ss_pred             ------------cccCCCCHHHHHHHHHHHhCCCCCe-EecceEEeeCCCC
Confidence                        0011237899999999998766532 3357888887764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.60  E-value=3.7e-15  Score=123.81  Aligned_cols=200  Identities=19%  Similarity=0.170  Sum_probs=115.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHH---HHHHh---ccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDI---KRKLT---LLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l---~~~~~---~~~~V~~   98 (303)
                      ++|+||||||+|+||++++++|+ + |+.|++++|++....  ....++.++.+|+.+.+..   .+.++   .+|.++|
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~-~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLS-R-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHT-T-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            46899999999999999999998 5 889999999875532  2245788999999887542   12222   4566888


Q ss_pred             EeecccccC----ChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           99 IFWVTWASQ----FASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        99 ~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      .++......    +..+....+++|+.++..+++++.... ..-.+++.+++...+...                  .+.
T Consensus        82 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~  143 (245)
T 3e9n_A           82 AAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPH------------------PGN  143 (245)
T ss_dssp             CC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC----------------------------C
T ss_pred             CCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCC------------------CCc
Confidence            876543221    233445688999999888888876531 101344444443232111                  002


Q ss_pred             CccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          174 SNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       174 ~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      .+   |+.+|...+         +. .+ +++.+++||.+.++......   ...          ..  ..+        
T Consensus       144 ~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~t~~~~~~~---~~~----------~~--~~~--------  196 (245)
T 3e9n_A          144 TI---YAASKHALRGLADAFRKEEANNG-IRVSTVSPGPTNTPMLQGLM---DSQ----------GT--NFR--------  196 (245)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCC-------------------------------C--------
T ss_pred             hH---HHHHHHHHHHHHHHHHHHhhhcC-eEEEEEecCCccCchhhhhh---hhh----------hc--ccc--------
Confidence            23   777776554         11 23 99999999999884221110   000          00  001        


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEee
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAI  278 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~  278 (303)
                       ...+.+++|+|+++++++..+..    +.+||+.
T Consensus       197 -~~~~~~p~dvA~~i~~l~~~~~~----~~~~~i~  226 (245)
T 3e9n_A          197 -PEIYIEPKEIANAIRFVIDAGET----TQITNVD  226 (245)
T ss_dssp             -CGGGSCHHHHHHHHHHHHTSCTT----EEEEEEE
T ss_pred             -cccCCCHHHHHHHHHHHHcCCCc----cceeeeE
Confidence             11256889999999999887643    3678875

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.59  E-value=1.5e-14  Score=120.38  Aligned_cols=208  Identities=16%  Similarity=0.156  Sum_probs=128.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      |+++||||+|+||++++++|+ +.|++|++++|++....    ....++.++.+|++|.++++++++.       +|.++
T Consensus         1 k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   79 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFI-QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV   79 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            589999999999999999999 68999999999865432    1124688999999999999998874       46688


Q ss_pred             EEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           98 HIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      |.++...     ...+..+....+++|+.++..+++++...  .....+++.+|+...+...                  
T Consensus        80 nnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------  141 (248)
T 3asu_A           80 NNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPY------------------  141 (248)
T ss_dssp             ECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------------
T ss_pred             ECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCC------------------
Confidence            8876431     22334555568999999999998888643  1122455555543222100                  


Q ss_pred             CCCCccchHHHHHHHHH-----H---hcCC-cceEEecCCceee-cCCCCccchhhHHHHHHHHhhhCCCceeeCCchhh
Q 042242          171 VSKSNNFYYVLEDLLKE-----K---LAGK-VAWSVHRPGLLLG-SSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e-----~---~~~~-~~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (303)
                      .+...   |+.+|...+     .   .... +++.+++|+.|.| +.....  . ...   ....   . . ...     
T Consensus       142 ~~~~~---Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~--~-~~~---~~~~---~-~-~~~-----  202 (248)
T 3asu_A          142 AGGNV---YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR--F-KGD---DGKA---E-K-TYQ-----  202 (248)
T ss_dssp             TTCHH---HHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------------
T ss_pred             CCCch---HHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhc--c-cCc---hHHH---H-H-HHh-----
Confidence            00222   777766554     1   1122 9999999999984 211100  0 000   0000   0 0 000     


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                          .....+++|+|.++++++..+..  ..+..+.+...
T Consensus       203 ----~~~~~~p~dvA~~v~~l~s~~~~--~~g~~i~v~~~  236 (248)
T 3asu_A          203 ----NTVALTPEDVSEAVWWVSTLPAH--VNINTLEMMPV  236 (248)
T ss_dssp             ------CCBCHHHHHHHHHHHHHSCTT--CCCCEEEECCT
T ss_pred             ----ccCCCCHHHHHHHHHHHhcCCcc--ceeeEEEEccc
Confidence                01135889999999998876543  23456665543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.59  E-value=2e-13  Score=113.11  Aligned_cols=219  Identities=10%  Similarity=0.010  Sum_probs=134.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      ++++|+++||||++.||+.+++.|+ +.|++|++++|++....       ....++..+++|++|+++++++++.     
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la-~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFA-LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3568999999999999999999999 68999999999875532       1234678899999999988777654     


Q ss_pred             --cCceeEEeecc-----cccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 --LEDVTHIFWVT-----WASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 --~~~V~~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        +|.++|.|+..     +.+.+.++..+.+++|+.++..+.+++...  ..+--+++.+++...+.+.           
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~-----------  151 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGG-----------  151 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSS-----------
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCC-----------
Confidence              45566666532     123344556669999999999888887765  1122344444432221000           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                           +  ...+   |..+|....         +....+++..+.||.|-.+........ .... .....+. ..|.  
T Consensus       152 -----~--~~~~---Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~-~~~~-~~~~~~~-~~~~--  216 (254)
T 4fn4_A          152 -----F--AGAP---YTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKP-SELG-MRTLTKL-MSLS--  216 (254)
T ss_dssp             -----S--SCHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSC-CHHH-HHHHHHH-HTTC--
T ss_pred             -----C--CChH---HHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCC-cHHH-HHHHHhc-CCCC--
Confidence                 0  0122   666554332         222229999999999976422111100 0100 0011100 0110  


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       +          .+-.++|+|.++++++...... ..|+.+.+.+|..
T Consensus       217 -~----------R~g~pediA~~v~fLaSd~a~~-iTG~~i~VDGG~t  252 (254)
T 4fn4_A          217 -S----------RLAEPEDIANVIVFLASDEASF-VNGDAVVVDGGLT  252 (254)
T ss_dssp             -C----------CCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGG
T ss_pred             -C----------CCcCHHHHHHHHHHHhCchhcC-CcCCEEEeCCCcc
Confidence             1          1457789999999987554332 4568898888743

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.59  E-value=2e-14  Score=121.67  Aligned_cols=201  Identities=17%  Similarity=0.110  Sum_probs=123.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-----c----CCCeEEEEecCCCHHHHHHHHh-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-----Q----SSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-----~----~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      +.+|+||||||+|+||++++++|+ +.|++|++++|++.+...     .    ...+.++.+|++|.+++.++++     
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999 689999999998654220     0    1347788999999999888776     


Q ss_pred             --ccCceeEEeecccc----cCChHHHHHHHHHHHHH----HHHHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           92 --LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAM----MCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        92 --~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                        .+|.|+|+++....    .....+..+.+++|+.+    ++.++..+++....-.+++.+++...+..          
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~----------  178 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV----------  178 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC----------
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc----------
Confidence              56778888765322    22344555689999999    55555555543211135555554323210          


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH---------Hhc-CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE---------KLA-GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~-~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                            .+   ..+...|+.+|...+         +.. .. +++++++|+.|.++...   ........  ....    
T Consensus       179 ------~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~---~~~~~~~~--~~~~----  240 (279)
T 1xg5_A          179 ------LP---LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF---KLHDKDPE--KAAA----  240 (279)
T ss_dssp             ------CS---CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH---HHTTTCHH--HHHH----
T ss_pred             ------CC---CCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh---hhcccChh--HHhh----
Confidence                  00   111122777666543         110 23 99999999998873110   00000000  0000    


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                                . .....+.+++|+|+++++++..+.
T Consensus       241 ----------~-~~~~~~~~~~dvA~~i~~l~~~~~  265 (279)
T 1xg5_A          241 ----------T-YEQMKCLKPEDVAEAVIYVLSTPA  265 (279)
T ss_dssp             ----------H-HC---CBCHHHHHHHHHHHHHSCT
T ss_pred             ----------h-cccccCCCHHHHHHHHHHHhcCCc
Confidence                      0 111125688999999999987664

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.59  E-value=1.2e-13  Score=120.28  Aligned_cols=205  Identities=10%  Similarity=0.001  Sum_probs=129.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------------ccCCCeEEEEecCCCHHHHHHHH
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------------IQSSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------------~~~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      .+.+|+||||||+|.||++++++|+ +.|++|++++|+..+..              ....++.++.+|++|.+++++++
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La-~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAA-KDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHH-HCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence            3456899999999999999999999 68999999999876421              01236788999999999988887


Q ss_pred             h-------ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCc
Q 042242           91 T-------LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPE  157 (303)
Q Consensus        91 ~-------~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g  157 (303)
                      +       .+|.++|.|+...    ...+..+..+.+++|+.++..+++++...  ..+..+++.+++...+...     
T Consensus       121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~-----  195 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV-----  195 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG-----
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC-----
Confidence            6       4566888876532    22234455568999999999999998665  1223455555543222110     


Q ss_pred             ccccCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhC
Q 042242          158 EKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHL  228 (303)
Q Consensus       158 ~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  228 (303)
                                 +   ......|+.+|...+         +..+ +++..+.|+.++.  +. .   ...      +    
T Consensus       196 -----------~---~~~~~~Y~aSKaal~~l~~~la~e~~~g-Irvn~v~PG~~i~--T~-~---~~~------~----  244 (346)
T 3kvo_A          196 -----------W---FKQHCAYTIAKYGMSMYVLGMAEEFKGE-IAVNALWPKTAIH--TA-A---MDM------L----  244 (346)
T ss_dssp             -----------G---TSSSHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEECSBCBC--CH-H---HHH------H----
T ss_pred             -----------C---CCCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEEEeCCCccc--cH-H---HHh------h----
Confidence                       0   001122777766543         1223 9999999986443  11 0   000      0    


Q ss_pred             CCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          229 NLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       229 ~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      ...           .....+.+++|+|.++++++.....  ..|+.+ +.++
T Consensus       245 ~~~-----------~~~~r~~~pedvA~~v~~L~s~~~~--itG~~i-vdgg  282 (346)
T 3kvo_A          245 GGP-----------GIESQCRKVDIIADAAYSIFQKPKS--FTGNFV-IDEN  282 (346)
T ss_dssp             CC-------------CGGGCBCTHHHHHHHHHHHTSCTT--CCSCEE-EHHH
T ss_pred             ccc-----------cccccCCCHHHHHHHHHHHHhcCCC--CCceEE-ECCc
Confidence            000           0111255788999999998876222  334655 5443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.59  E-value=6.7e-14  Score=116.26  Aligned_cols=159  Identities=15%  Similarity=0.114  Sum_probs=107.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecC--CCHHHHHHHHh---
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDL--LNPLDIKRKLT---   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~--~~~~~l~~~~~---   91 (303)
                      .+.+|+|+||||+|+||++++++|+ +.|++|++++|++.+..        ....+..++.+|+  .+.+++.++++   
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYA-AHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence            4567899999999999999999999 68999999999865432        1124567777777  88888777665   


Q ss_pred             ----ccCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccc
Q 042242           92 ----LLEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        92 ----~~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                          .+|.++|.++....     ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+.+.        
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------  161 (247)
T 3i1j_A           90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGR--------  161 (247)
T ss_dssp             HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCC--------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCC--------
Confidence                45668888765321     2244555668999999999999998654  1223455555543222110        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH--------HhcC-C-cceEEecCCceee
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAG-K-VAWSVHRPGLLLG  205 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~-~-~~~~ilRp~~v~G  205 (303)
                                .+...   |+.+|...+        .... . +++..++||.+..
T Consensus       162 ----------~~~~~---Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t  203 (247)
T 3i1j_A          162 ----------ANWGA---YGVSKFATEGLMQTLADELEGVTAVRANSINPGATRT  203 (247)
T ss_dssp             ----------TTCHH---HHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSS
T ss_pred             ----------CCcch---hHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccC
Confidence                      00122   777666544        1112 3 8999999988765

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.59  E-value=9.8e-15  Score=124.08  Aligned_cols=192  Identities=15%  Similarity=0.055  Sum_probs=123.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--------cCCCeEEEEecCCCHHHHHHHHh-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--------QSSSYCFISCDLLNPLDIKRKLT-----   91 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~~~-----   91 (303)
                      .+++++|+||||+|+||++++++|+ +.|++|++++|++.+...        ...++.++.+|++|.+++.++++     
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999999 689999999998654321        11257889999999998887776     


Q ss_pred             --ccCceeEE-eecccc---cCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCc
Q 042242           92 --LLEDVTHI-FWVTWA---SQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        92 --~~~~V~~~-~~~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        .+|.++|. ++....   ..+..+..+.+++|+.++.++++++.... ..-.+++.+|+...+...            
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------  171 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY------------  171 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC------------
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCC------------
Confidence              46668887 343221   22344555689999999999998876541 111244444442222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            .+...   |+.+|...+         +. ... +++++++||.+..+.   .    ...     .         
T Consensus       172 ------~~~~~---Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~---~----~~~-----~---------  221 (286)
T 1xu9_A          172 ------PMVAA---YSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET---A----MKA-----V---------  221 (286)
T ss_dssp             ------TTCHH---HHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH---H----HHH-----S---------
T ss_pred             ------CCccH---HHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh---H----HHh-----c---------
Confidence                  00223   777666543         21 223 899999998886521   0    000     0         


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                       .+      .......+++++|+.++.++..+.
T Consensus       222 -~~------~~~~~~~~~~~vA~~i~~~~~~~~  247 (286)
T 1xu9_A          222 -SG------IVHMQAAPKEECALEIIKGGALRQ  247 (286)
T ss_dssp             -CG------GGGGGCBCHHHHHHHHHHHHHTTC
T ss_pred             -cc------cccCCCCCHHHHHHHHHHHHhcCC
Confidence             00      011125688999999998886653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.58  E-value=1.3e-13  Score=115.34  Aligned_cols=218  Identities=16%  Similarity=0.131  Sum_probs=133.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhcc-------C
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTLL-------E   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~-------~   94 (303)
                      +.+|++|||||++.||+.+++.|+ +.|++|++++|+.+...    ....+...+++|++|.++++++++.+       |
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFV-AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            457899999999999999999999 78999999999876532    12356788999999999888777643       4


Q ss_pred             ceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           95 DVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        95 ~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .+++.|+...    .+.+.++..+.+++|+.++..+++++...-.+-..++.+++...+.+.                +.
T Consensus       106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~----------------~~  169 (273)
T 4fgs_A          106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGT----------------PA  169 (273)
T ss_dssp             EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCC----------------TT
T ss_pred             EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCC----------------CC
Confidence            4555554322    233455666799999999999999988763222334444432121000                00


Q ss_pred             CCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccc--hhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          171 VSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYN--FLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                        ..+   |..+|....        ..... +++..+.||.|..+.......  ....-.....+..  ..|+       
T Consensus       170 --~~~---Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~--~~Pl-------  235 (273)
T 4fgs_A          170 --FSV---YAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAA--QVPM-------  235 (273)
T ss_dssp             --CHH---HHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHH--HSTT-------
T ss_pred             --chH---HHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHh--cCCC-------
Confidence              122   777655433        11222 999999999987642211100  0000001111111  1221       


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                            --+-.++|+|.++++++...... ..|+.+.+.+|.
T Consensus       236 ------gR~g~peeiA~~v~FLaSd~a~~-iTG~~i~VDGG~  270 (273)
T 4fgs_A          236 ------GRVGRAEEVAAAALFLASDDSSF-VTGAELFVDGGS  270 (273)
T ss_dssp             ------SSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTT
T ss_pred             ------CCCcCHHHHHHHHHHHhCchhcC-ccCCeEeECcCh
Confidence                  12457789999999988554332 456888888774

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.57  E-value=1.7e-13  Score=114.08  Aligned_cols=220  Identities=11%  Similarity=0.074  Sum_probs=134.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      ..+|+++||||++.||+++++.|+ +.|++|++++|+.+...      ....++..+.+|++|.++++++++.       
T Consensus         5 L~gKvalVTGas~GIG~aia~~la-~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~   83 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLA-EERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGR   83 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            467999999999999999999999 68999999999876532      1245788999999999887776654       


Q ss_pred             cCceeEEeeccc---ccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           93 LEDVTHIFWVTW---ASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        93 ~~~V~~~~~~~~---~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      +|.++|.|+...   .+.+.++..+.+++|+.++..+.+++..+. .+--.++.+++...+.+.                
T Consensus        84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~----------------  147 (258)
T 4gkb_A           84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQ----------------  147 (258)
T ss_dssp             CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCC----------------
T ss_pred             CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCC----------------
Confidence            455666665422   233445556689999999998888876551 111234444432222110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchh-hHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFL-GCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                      +.  ..+   |..+|....         +.+..+++..+.||.|..+......... ........+..  ..|+   |  
T Consensus       148 ~~--~~~---Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--~~pl---g--  215 (258)
T 4gkb_A          148 GN--TSG---YCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAA--KVPL---G--  215 (258)
T ss_dssp             SS--CHH---HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHT--TCTT---T--
T ss_pred             CC--chH---HHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHh--cCCC---C--
Confidence            00  122   666555333         2222299999999999864322111000 00000011111  1121   0  


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                             ..+..++|+|.++++++...... ..|+.+.+.+|.+
T Consensus       216 -------~R~g~peeiA~~v~fLaS~~a~~-iTG~~i~VDGG~T  251 (258)
T 4gkb_A          216 -------RRFTTPDEIADTAVFLLSPRASH-TTGEWLFVDGGYT  251 (258)
T ss_dssp             -------TSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             -------CCCcCHHHHHHHHHHHhCchhcC-ccCCeEEECCCcc
Confidence                   02457789999999887554332 4568999988865

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.56  E-value=1e-13  Score=124.91  Aligned_cols=213  Identities=13%  Similarity=0.075  Sum_probs=134.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc--------cC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL--------LE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~--------~~   94 (303)
                      .+++++||||+|.||.+++++|. +.|++|++++|+.....    ....+++++.+|++|.++++++++.        +|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La-~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFA-RDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHHH-HCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            57899999999999999999999 67999999998753321    1123567899999999988877752        66


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .|+|.++....    ..+..+....+++|+.++.++.+++...  .....+++.+|+...+.+..               
T Consensus       291 ~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~---------------  355 (454)
T 3u0b_A          291 ILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNR---------------  355 (454)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCT---------------
T ss_pred             EEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCC---------------
Confidence            68888765432    2344555568999999999999998865  12344566665533321110               


Q ss_pred             CCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                         ....   |+.+|...+        ..... +++.++.|+.+..+.....    ... . ....+. .          
T Consensus       356 ---g~~~---YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~----~~~-~-~~~~~~-~----------  412 (454)
T 3u0b_A          356 ---GQTN---YATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI----PLA-T-REVGRR-L----------  412 (454)
T ss_dssp             ---TCHH---HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------------CHHHHH-S----------
T ss_pred             ---CCHH---HHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc----chh-h-HHHHHh-h----------
Confidence               0122   777766332        11122 9999999999987422110    000 0 000000 0          


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                         ..+....+.+|+|.++++++...... ..|+.+++.++..
T Consensus       413 ---~~l~r~g~pedvA~~v~fL~s~~a~~-itG~~i~vdGG~~  451 (454)
T 3u0b_A          413 ---NSLFQGGQPVDVAELIAYFASPASNA-VTGNTIRVCGQAM  451 (454)
T ss_dssp             ---BTTSSCBCHHHHHHHHHHHHCGGGTT-CCSCEEEESSSBS
T ss_pred             ---ccccCCCCHHHHHHHHHHHhCCccCC-CCCcEEEECCccc
Confidence               11122457789999999887644322 4568998887643

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.54  E-value=7.7e-13  Score=110.37  Aligned_cols=216  Identities=14%  Similarity=0.065  Sum_probs=131.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-------cCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-------LEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~~   98 (303)
                      ..+|++|||||++.||+++++.|+ +.|++|++++|+..+..   .....+++|+++.++++++++.       +|.++|
T Consensus         9 L~GK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVn   84 (261)
T 4h15_A            9 LRGKRALITAGTKGAGAATVSLFL-ELGAQVLTTARARPEGL---PEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVH   84 (261)
T ss_dssp             CTTCEEEESCCSSHHHHHHHHHHH-HTTCEEEEEESSCCTTS---CTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEE
T ss_pred             CCCCEEEEeccCcHHHHHHHHHHH-HcCCEEEEEECCchhCC---CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            357999999999999999999999 68999999999765422   2345788999999988776653       455666


Q ss_pred             Eeeccc------ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           99 IFWVTW------ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        99 ~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .++...      .+.+.++..+.+++|+.++..+.+++...  ..+--+++.+++...+..            .      
T Consensus        85 nAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------------~------  146 (261)
T 4h15_A           85 MLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------------L------  146 (261)
T ss_dssp             CCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------C------
T ss_pred             CCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC------------C------
Confidence            655321      22344555668999999999888887764  122234444443211100            0      


Q ss_pred             CCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHH--------HHHH-Hhh-hCCC
Q 042242          171 VSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLC--------VYGA-VCK-HLNL  230 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~--------~~~~-~~~-~~~~  230 (303)
                        .....+|+.+|....         +. .+ +++..+.||.|-.+....   ......        .... ... ....
T Consensus       147 --~~~~~~Y~asKaal~~lt~~lA~Ela~~g-IrVN~V~PG~i~T~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (261)
T 4h15_A          147 --PESTTAYAAAKAALSTYSKAMSKEVSPKG-VRVVRVSPGWIETEASVR---LAERLAKQAGTDLEGGKKIIMDGLGGI  220 (261)
T ss_dssp             --TTTCHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCCHHHHH---HHHHHHHHTTCCHHHHHHHHHHHTTCC
T ss_pred             --CCccHHHHHHHHHHHHHHHHHHHHhhhhC-eEEEEEeCCCcCCcchhh---hhHHHHHhhccchhhHHHHHHHHhcCC
Confidence              001123666555333         22 23 999999999887531100   000000        0000 000 0011


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      |             +-.+..++|+|.++++++..... ...|+.+.+.+|-..
T Consensus       221 P-------------lgR~g~peevA~~v~fLaS~~a~-~itG~~i~VDGG~v~  259 (261)
T 4h15_A          221 P-------------LGRPAKPEEVANLIAFLASDRAA-SITGAEYTIDGGTVP  259 (261)
T ss_dssp             T-------------TSSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTCSC
T ss_pred             C-------------CCCCcCHHHHHHHHHHHhCchhc-CccCcEEEECCcCcc
Confidence            2             12255788999999998754432 245689988887543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.54  E-value=1.8e-13  Score=113.42  Aligned_cols=215  Identities=12%  Similarity=0.051  Sum_probs=132.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhcc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL-----   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~-----   93 (303)
                      ..+|+++||||++.||+.+++.|+ +.|++|++.+|++....       ....++..+++|++|+++++++++.+     
T Consensus         7 L~gKvalVTGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLA-AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            467999999999999999999999 68999999999865432       12346788899999999887777543     


Q ss_pred             --CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCCc
Q 042242           94 --EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        94 --~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        |.++|.|+...    .+.+.++..+.+++|+.++..+.+++...-   .+--+++.+++...+.+.            
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~------------  153 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR------------  153 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC------------
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC------------
Confidence              44666655432    223455666799999999999888766541   122344444432221110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                          +.  ..+   |..+|....         +....+++..+.||.|..+....   ....-.....+..  ..|+.  
T Consensus       154 ----~~--~~~---Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~---~~~~~~~~~~~~~--~~Pl~--  217 (255)
T 4g81_D          154 ----PT--VAP---YTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTA---LIEDKQFDSWVKS--STPSQ--  217 (255)
T ss_dssp             ----TT--CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHH---HHTCHHHHHHHHH--HSTTC--
T ss_pred             ----CC--chh---HHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhc---ccCCHHHHHHHHh--CCCCC--
Confidence                00  122   666554332         22222999999999987632110   0000000011111  12211  


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                 .+..++|+|.++++++..... ...|+.+.+.+|.
T Consensus       218 -----------R~g~pediA~~v~fL~S~~a~-~iTG~~i~VDGG~  251 (255)
T 4g81_D          218 -----------RWGRPEELIGTAIFLSSKASD-YINGQIIYVDGGW  251 (255)
T ss_dssp             -----------SCBCGGGGHHHHHHHHSGGGT-TCCSCEEEESTTG
T ss_pred             -----------CCcCHHHHHHHHHHHhCchhC-CCcCCEEEECCCe
Confidence                       244677889998888754432 2456889888774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.53  E-value=1.8e-12  Score=108.12  Aligned_cols=215  Identities=10%  Similarity=0.048  Sum_probs=130.0

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      +.+|+++||||+|  .||+.+++.|. +.|++|++++|++....        ....++.++++|++|.++++++++.   
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4679999999987  89999999999 68999999999865432        1134688999999999888776653   


Q ss_pred             ----cCceeEEeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccc
Q 042242           93 ----LEDVTHIFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 ----~~~V~~~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                          +|.++|.++....        +...++....+++|+.++..+..++....++--.++.+++.......        
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~--------  154 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAV--------  154 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCC--------
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCc--------
Confidence                4556666543211        12233333467889888888887776653332344444432111000        


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCc
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLP  231 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (303)
                              +.  ...   |+.+|....         +....+++..+.||.|-.+........ ..  ....+..  ..|
T Consensus       155 --------~~--~~~---Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~-~~--~~~~~~~--~~P  216 (256)
T 4fs3_A          155 --------QN--YNV---MGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGF-NT--ILKEIKE--RAP  216 (256)
T ss_dssp             --------TT--THH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTH-HH--HHHHHHH--HST
T ss_pred             --------cc--chh---hHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCC-HH--HHHHHHh--cCC
Confidence                    00  112   666655332         322229999999998876432211110 01  1111111  122


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      +.             .+..++|+|.++++++..... ...|+.+.+.+|.
T Consensus       217 l~-------------R~g~peevA~~v~fL~Sd~a~-~iTG~~i~VDGG~  252 (256)
T 4fs3_A          217 LK-------------RNVDQVEVGKTAAYLLSDLSS-GVTGENIHVDSGF  252 (256)
T ss_dssp             TS-------------SCCCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTG
T ss_pred             CC-------------CCcCHHHHHHHHHHHhCchhc-CccCCEEEECcCH
Confidence            11             245778999999988754432 2456888888774

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.53  E-value=2.3e-15  Score=130.37  Aligned_cols=161  Identities=11%  Similarity=0.059  Sum_probs=102.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-------eEEEEecCCc--cc-----cccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-------KVYGIARKPE--IT-----AIQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~--~~-----~~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      .+||+||||+||||++++..|+ ..|+       +|+++++.+.  ..     ......+.++ .|+.+...+.++++++
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~-~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIA-AGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCC
Confidence            3589999999999999999999 5775       8999998642  11     1111122233 5776666678889999


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcC-cCC-CC
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYD-EEC-PR  170 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~-e~~-~~  170 (303)
                      |.|+|+|+......  .++.++++.|+.++.++++++++.+ +..+.+++.+....            ..+.. +.. ..
T Consensus        82 D~Vih~Ag~~~~~~--~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~------------~~~~~~~~~~~~  147 (327)
T 1y7t_A           82 DYALLVGAAPRKAG--MERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT------------NALIAYKNAPGL  147 (327)
T ss_dssp             SEEEECCCCCCCTT--CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH------------HHHHHHHTCTTS
T ss_pred             CEEEECCCcCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhh------------hHHHHHHHcCCC
Confidence            99999987654322  2334589999999999999999875 44333222111100            01111 111 12


Q ss_pred             CCCCccchHHHHHHHHH-----Hhc--CCcceEEecCCceeecCC
Q 042242          171 VSKSNNFYYVLEDLLKE-----KLA--GKVAWSVHRPGLLLGSSH  208 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e-----~~~--~~~~~~ilRp~~v~G~~~  208 (303)
                      .|..+   |+.+|+..+     +.+  + ++.+++||++|||++.
T Consensus       148 ~p~~~---yg~tkl~~er~~~~~a~~~g-~~~~~vr~~~V~G~h~  188 (327)
T 1y7t_A          148 NPRNF---TAMTRLDHNRAKAQLAKKTG-TGVDRIRRMTVWGNHS  188 (327)
T ss_dssp             CGGGE---EECCHHHHHHHHHHHHHHHT-CCGGGEECCEEEBCSS
T ss_pred             Chhhe---eccchHHHHHHHHHHHHHhC-cChhheeeeEEEcCCC
Confidence            22333   555444333     332  4 8899999999999754

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.52  E-value=1e-13  Score=116.05  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=104.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------cCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------QSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +++|+++||||+|+||++++++|+ +.|++|++++|++.....       ...++.++.+|++|.++++++++.      
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLC-KAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            456899999999999999999999 689999999998654320       123578899999999988777654      


Q ss_pred             --cCceeEEee--cc---------cccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCc
Q 042242           93 --LEDVTHIFW--VT---------WASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPE  157 (303)
Q Consensus        93 --~~~V~~~~~--~~---------~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g  157 (303)
                        +|.++|.++  ..         ....+.....+.+++|+.++..+..++...  ..+..+++.+++...+..      
T Consensus        82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------  155 (260)
T 2qq5_A           82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------  155 (260)
T ss_dssp             TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC------
T ss_pred             CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC------
Confidence              356888873  11         112233344458889999988777776543  112245555554322210      


Q ss_pred             ccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeec
Q 042242          158 EKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       158 ~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~  206 (303)
                                   .+..+   |+.+|...+         +. .+ +++++++|+.+..+
T Consensus       156 -------------~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~  197 (260)
T 2qq5_A          156 -------------MFNVP---YGVGKAACDKLAADCAHELRRHG-VSCVSLWPGIVQTE  197 (260)
T ss_dssp             -------------CSSHH---HHHHHHHHHHHHHHHHHHHGGGT-CEEEEEECCCSCTT
T ss_pred             -------------CCCCc---hHHHHHHHHHHHHHHHHHhccCC-eEEEEEecCccccH
Confidence                         01223   777766554         11 24 99999999999874

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.52  E-value=2.8e-13  Score=114.05  Aligned_cols=217  Identities=11%  Similarity=-0.020  Sum_probs=132.8

Q ss_pred             CCCCEEEEEcC--CChhHHHHHHHHhhcCCCeEEEEecCCccc-c----ccCCCeEEEEecCCCHHHHHHHHh-------
Q 042242           26 DAKNVAVIFGV--TGLVGKELARRLISTANWKVYGIARKPEIT-A----IQSSSYCFISCDLLNPLDIKRKLT-------   91 (303)
Q Consensus        26 ~~~~~vlVtGa--tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~----~~~~~~~~~~~D~~~~~~l~~~~~-------   91 (303)
                      +++|+|+||||  +|+||++++++|+ +.|++|++++|++.+. .    ....++.++.+|++|.++++++++       
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQ-EQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   83 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHH-HCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35689999999  9999999999999 6899999999987542 1    112357889999999999888776       


Q ss_pred             ---ccCceeEEeeccc---------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccc
Q 042242           92 ---LLEDVTHIFWVTW---------ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEK  159 (303)
Q Consensus        92 ---~~~~V~~~~~~~~---------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~  159 (303)
                         .+|.++|.++...         ...+..+..+.+++|+.++..+++++.....+-.+++.+++...++         
T Consensus        84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~---------  154 (269)
T 2h7i_A           84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA---------  154 (269)
T ss_dssp             TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC---------
T ss_pred             CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc---------
Confidence               5566888876432         1223445556899999999999999876521112444443311110         


Q ss_pred             ccCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCcc-c-hhhHHH----HH-HH
Q 042242          160 QVRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLY-N-FLGCLC----VY-GA  223 (303)
Q Consensus       160 ~~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~-~-~~~~~~----~~-~~  223 (303)
                                   ......|+.+|...+        ..... +++..++|+.+..+...... . ......    .. ..
T Consensus       155 -------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  221 (269)
T 2h7i_A          155 -------------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEG  221 (269)
T ss_dssp             -------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             -------------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHh
Confidence                         001112677665443        11122 99999999988763100000 0 000000    00 00


Q ss_pred             HhhhCCCceeeCCchhhhhhhcc-cCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          224 VCKHLNLPFVFGGTREIWEEYCL-DGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      +..  ..|             +- .+.+++|+|.++++++...... ..|+.+++.++.
T Consensus       222 ~~~--~~p-------------~~rr~~~p~dvA~~v~~L~s~~~~~-itG~~i~vdGG~  264 (269)
T 2h7i_A          222 WDQ--RAP-------------IGWNMKDATPVAKTVCALLSDWLPA-TTGDIIYADGGA  264 (269)
T ss_dssp             HHH--HCT-------------TCCCTTCCHHHHHHHHHHHSSSCTT-CCSEEEEESTTG
T ss_pred             hhc--cCC-------------cccCCCCHHHHHHHHHHHhCchhcc-CcceEEEecCCe
Confidence            000  011             11 2457789999999988654322 456888888774

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.51  E-value=1.5e-13  Score=118.87  Aligned_cols=156  Identities=16%  Similarity=0.142  Sum_probs=106.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--------cCCCeEEEEecCCCHHHHHHHHhc--
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--------QSSSYCFISCDLLNPLDIKRKLTL--   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--------~~~~~~~~~~D~~~~~~l~~~~~~--   92 (303)
                      +|+|+||||+|+||++++++|+ +.|++|++++|+.....     .        ...++.++.+|++|.+++.++++.  
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~-~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLA-SDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHH-TCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-HCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4789999999999999999999 68999888887543321     0        024688999999999999999886  


Q ss_pred             ---cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 ---LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ---~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                         +|.++|.++....    ..+..+..+.+++|+.++.++++++...  .....+++.+++...+...           
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~-----------  149 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL-----------  149 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC-----------
Confidence               5668888764321    2234455568999999999999987543  1123344444443222110           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeec
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~  206 (303)
                           +  ....   |+.+|...+         +. .+ +++++++|+.|..+
T Consensus       150 -----~--~~~~---Y~aSK~a~~~~~~~la~el~~~g-I~v~~v~PG~v~T~  191 (327)
T 1jtv_A          150 -----P--FNDV---YCASKFALEGLCESLAVLLLPFG-VHLSLIECGPVHTA  191 (327)
T ss_dssp             -----T--TCHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCC-
T ss_pred             -----C--CChH---HHHHHHHHHHHHHHHHHHhhhcC-cEEEEEEeCcccCh
Confidence                 0  0122   777776554         11 23 99999999999874

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.51  E-value=8.9e-14  Score=115.36  Aligned_cols=213  Identities=11%  Similarity=0.060  Sum_probs=122.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-e--cCCccccc---cCCCeEEEEecCCCHHHH-HHHHh---ccCcee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGI-A--RKPEITAI---QSSSYCFISCDLLNPLDI-KRKLT---LLEDVT   97 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~--r~~~~~~~---~~~~~~~~~~D~~~~~~l-~~~~~---~~~~V~   97 (303)
                      +|+++||||+|+||++++++|+ +.|++|+++ +  |++.+...   +..+..+.  |..+.+.+ +++.+   .+|.++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~g~iD~lv   77 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALT-QDGYTVVCHDASFADAAERQRFESENPGTIAL--AEQKPERLVDATLQHGEAIDTIV   77 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHH-HTTCEEEECCGGGGSHHHHHHHHHHSTTEEEC--CCCCGGGHHHHHGGGSSCEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHH-HCCCEEEEecCCcCCHHHHHHHHHHhCCCccc--CHHHHHHHHHHHHHHcCCCCEEE
Confidence            3789999999999999999999 689999999 6  87654321   01222222  44444333 22322   355688


Q ss_pred             EEeecccc-------cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           98 HIFWVTWA-------SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        98 ~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      |.++....       ..+..+..+.+++|+.++..+++++...  ..+..+++.+++...+...                
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----------------  141 (244)
T 1zmo_A           78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL----------------  141 (244)
T ss_dssp             ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----------------
T ss_pred             ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC----------------
Confidence            88764322       2234555568999999999999988654  1223455555543332110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                        .+...   |+.+|...+         .. .+ +++++++|+.+..+........ ..-.....+... ..|       
T Consensus       142 --~~~~~---Y~asK~a~~~~~~~la~e~~~~g-i~v~~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~~-~~p-------  206 (244)
T 1zmo_A          142 --AYNPL---YGPARAATVALVESAAKTLSRDG-ILLYAIGPNFFNNPTYFPTSDW-ENNPELRERVDR-DVP-------  206 (244)
T ss_dssp             --TTCTT---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESSBCBTTTBCHHHH-HHCHHHHHHHHH-HCT-------
T ss_pred             --CCchH---HHHHHHHHHHHHHHHHHHHhhcC-cEEEEEeeCCCcCCcccccccc-cchHHHHHHHhc-CCC-------
Confidence              00223   777766544         11 23 9999999998876321000000 000000001000 011       


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                            +..+.+++|+|.++++++...... ..|+.+.+.++.
T Consensus       207 ------~~r~~~pe~vA~~v~~l~s~~~~~-~tG~~i~vdgG~  242 (244)
T 1zmo_A          207 ------LGRLGRPDEMGALITFLASRRAAP-IVGQFFAFTGGY  242 (244)
T ss_dssp             ------TCSCBCHHHHHHHHHHHHTTTTGG-GTTCEEEESTTC
T ss_pred             ------CCCCcCHHHHHHHHHHHcCccccC-ccCCEEEeCCCC
Confidence                  112567899999999988654322 345888887764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.51  E-value=3.7e-13  Score=115.44  Aligned_cols=122  Identities=14%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c---cCCCeEEEEecCCCH-HHHHHHHh-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I---QSSSYCFISCDLLNP-LDIKRKLT-----   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~-~~l~~~~~-----   91 (303)
                      ..+|+||||||+|+||++++++|+ ..|++|++++|+..+..     .   ...++.++.+|++|. ++++.+++     
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLS-SNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            356899999999999999999999 68999999999875431     1   124688999999998 77666654     


Q ss_pred             --ccCceeEEeecccc----------------------------------cCChHHHHHHHHHHHHHHHHHHHHHhhc--
Q 042242           92 --LLEDVTHIFWVTWA----------------------------------SQFASDMHKCCEQNKAMMCNALNAILPR--  133 (303)
Q Consensus        92 --~~~~V~~~~~~~~~----------------------------------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--  133 (303)
                        .+|.++|.|+....                                  ........+.+++|+.++..+++++...  
T Consensus        89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~  168 (311)
T 3o26_A           89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ  168 (311)
T ss_dssp             HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence              56678888775421                                  1123344457999999999999988654  


Q ss_pred             cCCccEEEEeecccc
Q 042242          134 AKALKHVSLQTGMKH  148 (303)
Q Consensus       134 ~~~~~~~~~~s~~~~  148 (303)
                      ..+..+++.+++...
T Consensus       169 ~~~~~~IV~isS~~~  183 (311)
T 3o26_A          169 LSDSPRIVNVSSSTG  183 (311)
T ss_dssp             TSSSCEEEEECCGGG
T ss_pred             cCCCCeEEEEecCCc
Confidence            122345555555433

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.50  E-value=3.8e-13  Score=112.53  Aligned_cols=157  Identities=15%  Similarity=0.076  Sum_probs=107.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhc---CCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhc-
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLIST---ANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTL-   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~---~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~-   92 (303)
                      +.+|+++||||+|+||++++++|+ +   .|++|++++|++....     .    ...++.++.+|++|.++++++++. 
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~-~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLA-RLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHH-TTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHH-HhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            356899999999999999999999 5   7999999999865432     0    023578899999999988777653 


Q ss_pred             --------cC--ceeEEeecccc------c-CChHHHHHHHHHHHHHHHHHHHHHhhcc-C---CccEEEEeeccccccc
Q 042242           93 --------LE--DVTHIFWVTWA------S-QFASDMHKCCEQNKAMMCNALNAILPRA-K---ALKHVSLQTGMKHYVS  151 (303)
Q Consensus        93 --------~~--~V~~~~~~~~~------~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~---~~~~~~~~s~~~~y~~  151 (303)
                              .|  .++|.++....      . .+..+..+.+++|+.++..+++++.... .   ...+++.+++...+..
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~  162 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP  162 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCC
Confidence                    35  67787764321      1 2445556689999999999999987652 1   2345666655333211


Q ss_pred             ccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh---cCCcceEEecCCceee
Q 042242          152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL---AGKVAWSVHRPGLLLG  205 (303)
Q Consensus       152 ~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~---~~~~~~~ilRp~~v~G  205 (303)
                      .                  .+...   |+.+|...+     +.   .. +++..++|+.+-.
T Consensus       163 ~------------------~~~~~---Y~asKaa~~~~~~~la~e~~~-i~vn~v~PG~v~T  202 (259)
T 1oaa_A          163 Y------------------KGWGL---YCAGKAARDMLYQVLAAEEPS-VRVLSYAPGPLDN  202 (259)
T ss_dssp             C------------------TTCHH---HHHHHHHHHHHHHHHHHHCTT-EEEEEEECCSBSS
T ss_pred             C------------------CCccH---HHHHHHHHHHHHHHHHhhCCC-ceEEEecCCCcCc
Confidence            0                  00222   787776554     11   23 8889999987754

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.50  E-value=8.6e-13  Score=108.45  Aligned_cols=215  Identities=14%  Similarity=0.087  Sum_probs=133.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhc--cCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTL--LEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~~   98 (303)
                      ..+|+++||||++.||+.+++.|. +.|++|++.+|+..+..     ....++..+++|++|++++++.++.  +|.++|
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la-~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLA-AAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHH-HcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999 68999999999865321     2234678899999999888777754  444666


Q ss_pred             Eeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           99 IFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        99 ~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      .|+...    .+.+.++..+.+++|+.++..+.+++...   ..+--.++.+++...+.+.                +. 
T Consensus        86 NAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~----------------~~-  148 (247)
T 4hp8_A           86 NAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGG----------------IR-  148 (247)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC----------------SS-
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCC----------------CC-
Confidence            655432    23345556669999999999988876543   1122344444442221110                00 


Q ss_pred             CCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          172 SKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                       ...   |..+|.-..         +....+++..+.||.|-.+...   ...........+..  ..|+.         
T Consensus       149 -~~~---Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~---~~~~~~~~~~~~~~--~~Plg---------  210 (247)
T 4hp8_A          149 -VPS---YTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTE---ALRADAARNKAILE--RIPAG---------  210 (247)
T ss_dssp             -CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH---HHHTSHHHHHHHHT--TCTTS---------
T ss_pred             -ChH---HHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchh---hcccCHHHHHHHHh--CCCCC---------
Confidence             112   776554332         3322299999999998763211   00000011111111  22321         


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                          .+-.++|+|.++++++..... ...|+.+.+.+|.
T Consensus       211 ----R~g~peeiA~~v~fLaSd~a~-~iTG~~i~VDGG~  244 (247)
T 4hp8_A          211 ----RWGHSEDIAGAAVFLSSAAAD-YVHGAILNVDGGW  244 (247)
T ss_dssp             ----SCBCTHHHHHHHHHHTSGGGT-TCCSCEEEESTTG
T ss_pred             ----CCcCHHHHHHHHHHHhCchhc-CCcCCeEEECccc
Confidence                245778999999988755432 2456888888774

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.48  E-value=4.5e-13  Score=121.74  Aligned_cols=209  Identities=12%  Similarity=0.093  Sum_probs=131.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc--------c--cCCCeEEEEecCCCHHHHHHHHhcc--
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA--------I--QSSSYCFISCDLLNPLDIKRKLTLL--   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~--------~--~~~~~~~~~~D~~~~~~l~~~~~~~--   93 (303)
                      .+++||||||+|+||.+++++|+ ..|++ |++++|++....        .  ...++.++.+|++|.+++.++++.+  
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La-~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~  303 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLA-RRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD  303 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHH-HHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999 56885 999999865211        1  1236788999999999999999876  


Q ss_pred             ----CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 ----EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 ----~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                          |.|||+++....    ..+.......++.|+.++.++++++...  ...+++++|+...+.+..            
T Consensus       304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~--~~~~~V~~SS~a~~~g~~------------  369 (486)
T 2fr1_A          304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFSSFASAFGAP------------  369 (486)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEEEHHHHTCCT------------
T ss_pred             cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC--CCCEEEEEcChHhcCCCC------------
Confidence                558998775332    2344455567899999999999999875  234455544432221110            


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H-hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K-LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~-~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                            ....   |+.+|...+     . ..+ +++++++|+.+.+.+  ..    ...     ...    .+  .    
T Consensus       370 ------g~~~---Yaaaka~l~~la~~~~~~g-i~v~~i~pG~~~~~g--m~----~~~-----~~~----~~--~----  418 (486)
T 2fr1_A          370 ------GLGG---YAPGNAYLDGLAQQRRSDG-LPATAVAWGTWAGSG--MA----EGP-----VAD----RF--R----  418 (486)
T ss_dssp             ------TCTT---THHHHHHHHHHHHHHHHTT-CCCEEEEECCBC---------------------------C--T----
T ss_pred             ------CCHH---HHHHHHHHHHHHHHHHhcC-CeEEEEECCeeCCCc--cc----chh-----HHH----HH--H----
Confidence                  0122   666655444     2 234 999999999988732  11    000     000    00  0    


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHH
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIG  293 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~  293 (303)
                         +.-...++.++++.++..++..+..     . +.+..   +.|..+...+.
T Consensus       419 ---~~g~~~i~~e~~a~~l~~~l~~~~~-----~-~~v~~---~d~~~~~~~~~  460 (486)
T 2fr1_A          419 ---RHGVIEMPPETACRALQNALDRAEV-----C-PIVID---VRWDRFLLAYT  460 (486)
T ss_dssp             ---TTTEECBCHHHHHHHHHHHHHTTCS-----S-CEECE---ECHHHHHHHHT
T ss_pred             ---hcCCCCCCHHHHHHHHHHHHhCCCC-----e-EEEEe---CCHHHHhhhhc
Confidence               1112356888999999888876532     1 22322   45666665443

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.46  E-value=6.4e-13  Score=114.47  Aligned_cols=154  Identities=10%  Similarity=-0.010  Sum_probs=98.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC---------Ccccc-----ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK---------PEITA-----IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~---------~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      +.+|+|+||||+|+||+++++.|+ ..|++|++++|.         ..+..     ....+. ...+|+.+.++++++++
T Consensus         7 l~gk~~lVTGas~GIG~~~a~~La-~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            7 FDGRVVLVTGAGGGLGRAYALAFA-ERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHH
Confidence            456899999999999999999999 689999997653         22211     111111 23589999887666543


Q ss_pred             -------ccCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcc
Q 042242           92 -------LLEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEE  158 (303)
Q Consensus        92 -------~~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~  158 (303)
                             .+|.+||.|+....    ..+.......+++|+.++..+++++...  .....+++.+++...+.+.      
T Consensus        85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~------  158 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN------  158 (319)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC------
Confidence                   45668888765322    2244455568999999999999887553  1123455555543221010      


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH-----Hh-----cCCcceEEecCCce
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE-----KL-----AGKVAWSVHRPGLL  203 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~~-----~~~~~~~ilRp~~v  203 (303)
                          +        +...   |+.+|...+     +.     .+ +++.+++|+.+
T Consensus       159 ----~--------~~~~---Y~aSK~a~~~~~~~la~el~~~g-I~vn~v~PG~~  197 (319)
T 1gz6_A          159 ----F--------GQAN---YSAAKLGLLGLANTLVIEGRKNN-IHCNTIAPNAG  197 (319)
T ss_dssp             ----T--------TCHH---HHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEEECC
T ss_pred             ----C--------CCHH---HHHHHHHHHHHHHHHHHHhcccC-EEEEEEeCCCc
Confidence                0        0222   787776554     11     23 99999999876

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.43  E-value=2.2e-12  Score=117.75  Aligned_cols=210  Identities=13%  Similarity=0.139  Sum_probs=132.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc--------cc--CCCeEEEEecCCCHHHHHHHHhc--c
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA--------IQ--SSSYCFISCDLLNPLDIKRKLTL--L   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~--------~~--~~~~~~~~~D~~~~~~l~~~~~~--~   93 (303)
                      .+++||||||+|+||.+++++|. +.|+ .|++++|+.....        ..  ..++.++.+|++|.+++.++++.  +
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La-~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l  336 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLA-AEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPP  336 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHH-HTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-hCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence            46899999999999999999998 6888 4999999864311        11  23578899999999999999987  7


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccc-ccccccCCCcccccCCcCcCC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMK-HYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~-~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      |.|||+++....    ..+.......++.|+.++.++.+++... ....+++++|+.. .|+..                
T Consensus       337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~~V~~SS~a~~~g~~----------------  399 (511)
T 2z5l_A          337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADI-KGLDAFVLFSSVTGTWGNA----------------  399 (511)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC-TTCCCEEEEEEGGGTTCCT----------------
T ss_pred             cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCEEEEEeCHHhcCCCC----------------
Confidence            779999775432    2234444567899999999999988754 1233444444321 22111                


Q ss_pred             CCCCCCccchHHHHHHHHHH----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          169 PRVSKSNNFYYVLEDLLKEK----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e~----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                         ....   |+.+|...+.    .... +++++++|+.+.+  .+.....  ..   ..+.                 +
T Consensus       400 ---g~~~---YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~--tgm~~~~--~~---~~~~-----------------~  449 (511)
T 2z5l_A          400 ---GQGA---YAAANAALDALAERRRAAGLPATSVAWGLWGG--GGMAAGA--GE---ESLS-----------------R  449 (511)
T ss_dssp             ---TBHH---HHHHHHHHHHHHHHHHTTTCCCEEEEECCBCS--TTCCCCH--HH---HHHH-----------------H
T ss_pred             ---CCHH---HHHHHHHHHHHHHHHHHcCCcEEEEECCcccC--Ccccccc--cH---HHHH-----------------h
Confidence               0122   7777665552    1222 9999999988743  1211111  00   0010                 1


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHH
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIG  293 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~  293 (303)
                      .-+...+.++++.+++.++..+..      .+.+..   +.|..+...+.
T Consensus       450 ~g~~~l~~e~~a~~l~~al~~~~~------~v~v~~---~d~~~~~~~~~  490 (511)
T 2z5l_A          450 RGLRAMDPDAAVDALLGAMGRNDV------CVTVVD---VDWERFAPATN  490 (511)
T ss_dssp             HTBCCBCHHHHHHHHHHHHHHTCS------EEEECC---BCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHhCCCC------EEEEEe---CCHHHHHhhhc
Confidence            112356788999999888866532      232332   45666665543

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.42  E-value=2.2e-11  Score=103.83  Aligned_cols=216  Identities=12%  Similarity=0.060  Sum_probs=124.0

Q ss_pred             CCCCEEEEEcCC--ChhHHHHHHHHhhcCCCeEEEEecCC-----------cccc----ccCCC----eEEEEecC----
Q 042242           26 DAKNVAVIFGVT--GLVGKELARRLISTANWKVYGIARKP-----------EITA----IQSSS----YCFISCDL----   80 (303)
Q Consensus        26 ~~~~~vlVtGat--G~iG~~l~~~L~~~~g~~V~~~~r~~-----------~~~~----~~~~~----~~~~~~D~----   80 (303)
                      +++|+++||||+  |+||++++++|+ +.|++|++++|++           .+..    .....    ...+.+|+    
T Consensus         6 l~~k~~lVTGas~~~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
T 1d7o_A            6 LRGKRAFIAGIADDNGYGWAVAKSLA-AAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN   84 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHH-HCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence            356899999999  999999999999 6899999998642           1110    00001    23344432    


Q ss_pred             ----C----C--------HHHHHHHHh-------ccCceeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHHh
Q 042242           81 ----L----N--------PLDIKRKLT-------LLEDVTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAIL  131 (303)
Q Consensus        81 ----~----~--------~~~l~~~~~-------~~~~V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~~  131 (303)
                          .    |        .++++++++       .+|.++|.|+..      ....+..+..+.+++|+.++..+++++.
T Consensus        85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  164 (297)
T 1d7o_A           85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL  164 (297)
T ss_dssp             GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred             hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence                2    1        334444433       456688887532      1233445556689999999999999998


Q ss_pred             hccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh--cCCcceEEecC
Q 042242          132 PRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL--AGKVAWSVHRP  200 (303)
Q Consensus       132 ~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~--~~~~~~~ilRp  200 (303)
                      ....+-.+++.+++...+.+.                +.. ..+   |+.+|...+         +.  .+ +++..++|
T Consensus       165 ~~m~~~g~iv~isS~~~~~~~----------------~~~-~~~---Y~asKaa~~~~~~~la~e~~~~~g-i~vn~v~P  223 (297)
T 1d7o_A          165 PIMNPGGASISLTYIASERII----------------PGY-GGG---MSSAKAALESDTRVLAFEAGRKQN-IRVNTISA  223 (297)
T ss_dssp             GGEEEEEEEEEEECGGGTSCC----------------TTC-TTT---HHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEE
T ss_pred             HHhccCceEEEEeccccccCC----------------CCc-chH---HHHHHHHHHHHHHHHHHHhCcccC-cEEEEEec
Confidence            752111344444442222100                000 023   777666443         22  35 99999999


Q ss_pred             CceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       201 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      +.+.++..... ......  ...+..  ..|+             ..+.+++|+|.++++++...... ..|+.+++.++
T Consensus       224 G~v~T~~~~~~-~~~~~~--~~~~~~--~~p~-------------~r~~~pedvA~~v~~l~s~~~~~-itG~~i~vdgG  284 (297)
T 1d7o_A          224 GPLGSRAAKAI-GFIDTM--IEYSYN--NAPI-------------QKTLTADEVGNAAAFLVSPLASA-ITGATIYVDNG  284 (297)
T ss_dssp             CCCBCCCSSCC-SHHHHH--HHHHHH--HSSS-------------CCCBCHHHHHHHHHHHTSGGGTT-CCSCEEEESTT
T ss_pred             cccccchhhhc-cccHHH--HHHhhc--cCCC-------------CCCCCHHHHHHHHHHHhCccccC-CCCCEEEECCC
Confidence            99998532211 110111  011111  1121             12457899999999887643221 34688999887


Q ss_pred             CC
Q 042242          281 PR  282 (303)
Q Consensus       281 ~~  282 (303)
                      ..
T Consensus       285 ~~  286 (297)
T 1d7o_A          285 LN  286 (297)
T ss_dssp             GG
T ss_pred             ce
Confidence            43

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.41  E-value=3.1e-12  Score=116.01  Aligned_cols=155  Identities=15%  Similarity=0.078  Sum_probs=106.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHHhcc--
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKLTLL--   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~--   93 (303)
                      |++++|||||+|.||.+++++|. ..|+ .|+++.|+.....          ....++.++.+|++|.+++.++++.+  
T Consensus       238 ~~~~vLITGgsgGIG~alA~~La-~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~  316 (496)
T 3mje_A          238 VHGSVLVTGGTGGIGGRVARRLA-EQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPE  316 (496)
T ss_dssp             CCSEEEEETCSSHHHHHHHHHHH-HTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred             CCCEEEEECCCCchHHHHHHHHH-HCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            55899999999999999999999 6788 6888888753321          11236888999999999999998753  


Q ss_pred             ----CceeEEeecc-c----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCc
Q 042242           94 ----EDVTHIFWVT-W----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        94 ----~~V~~~~~~~-~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                          |.|||.++.. .    ...+.......++.|+.++.++.+++....  ..+++.+|+...+.+..           
T Consensus       317 ~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~--~~~iV~~SS~a~~~g~~-----------  383 (496)
T 3mje_A          317 DAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD--LDAFVLFSSGAAVWGSG-----------  383 (496)
T ss_dssp             TSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC--CSEEEEEEEHHHHTTCT-----------
T ss_pred             hCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC--CCEEEEEeChHhcCCCC-----------
Confidence                4588887654 1    223344555689999999999999988762  23444444322221110           


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH-----H-hcCCcceEEecCCceeec
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE-----K-LAGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e-----~-~~~~~~~~ilRp~~v~G~  206 (303)
                             ....   |+.+|...+     . ..+ ++++++.|+.+.+.
T Consensus       384 -------g~~~---YaAaKa~ldala~~~~~~G-i~v~sV~pG~w~~~  420 (496)
T 3mje_A          384 -------GQPG---YAAANAYLDALAEHRRSLG-LTASSVAWGTWGEV  420 (496)
T ss_dssp             -------TCHH---HHHHHHHHHHHHHHHHHTT-CCCEEEEECEESSS
T ss_pred             -------CcHH---HHHHHHHHHHHHHHHHhcC-CeEEEEECCcccCC
Confidence                   0122   777665444     1 234 99999999988763

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.30  E-value=2.3e-11  Score=113.61  Aligned_cols=120  Identities=13%  Similarity=0.047  Sum_probs=79.0

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC---------Ccccc-----ccCCCeEEEEecCCCHHHHHHH
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK---------PEITA-----IQSSSYCFISCDLLNPLDIKRK   89 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~---------~~~~~-----~~~~~~~~~~~D~~~~~~l~~~   89 (303)
                      ..+.+|+++||||+|.||++++++|+ +.|++|++++|.         .....     ....+. ...+|+.|.+++.++
T Consensus        15 ~~l~gk~~lVTGas~GIG~aiA~~La-~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~D~~d~~~~~~~   92 (613)
T 3oml_A           15 LRYDGRVAVVTGAGAGLGREYALLFA-ERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVADYNSVIDGAKV   92 (613)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEC--------------CHHHHHHHHHHTTC-CEEECCCCGGGHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHHH
Confidence            34567999999999999999999999 689999999882         22111     111122 234899999887777


Q ss_pred             Hhc-------cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeec
Q 042242           90 LTL-------LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTG  145 (303)
Q Consensus        90 ~~~-------~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~  145 (303)
                      ++.       +|.++|.|+....    ..+..+....+++|+.++.++++++...  ..+..+++.+++
T Consensus        93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS  161 (613)
T 3oml_A           93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSS  161 (613)
T ss_dssp             HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            763       5668888765322    2345555668999999999999998554  122345555554

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.29  E-value=3.1e-11  Score=110.58  Aligned_cols=155  Identities=14%  Similarity=0.076  Sum_probs=106.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEE-ecCCcc-------------cc-----c--cCCCeEEEEecCCCHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGI-ARKPEI-------------TA-----I--QSSSYCFISCDLLNPL   84 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~-~r~~~~-------------~~-----~--~~~~~~~~~~D~~~~~   84 (303)
                      .++++|||||+|.||.+++++|. ..|++ |+++ +|++..             ..     .  ...++.++.+|++|.+
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La-~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~  328 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLA-RDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE  328 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHH-HHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-HcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence            46899999999999999999999 57887 6666 787432             10     0  1235888999999999


Q ss_pred             HHHHHHhcc------CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCC---ccEEEEeeccccccc
Q 042242           85 DIKRKLTLL------EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKA---LKHVSLQTGMKHYVS  151 (303)
Q Consensus        85 ~l~~~~~~~------~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~---~~~~~~~s~~~~y~~  151 (303)
                      ++.++++.+      |.|||.++...    ...+..+....++.|+.++.++.+++......   ..+++.+|+...+.+
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g  408 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG  408 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence            999999864      45888876532    23344555568999999999999998876311   445555554322211


Q ss_pred             ccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHHHh----cCC-cceEEecCCce
Q 042242          152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKL----AGK-VAWSVHRPGLL  203 (303)
Q Consensus       152 ~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e~~----~~~-~~~~ilRp~~v  203 (303)
                      ..                  ....   |+.+|...+..    ... ++++++.|+.+
T Consensus       409 ~~------------------g~~~---YaaaKa~l~~lA~~~~~~gi~v~sI~pG~~  444 (525)
T 3qp9_A          409 GA------------------GQGA---YAAGTAFLDALAGQHRADGPTVTSVAWSPW  444 (525)
T ss_dssp             CT------------------TCHH---HHHHHHHHHHHHTSCCSSCCEEEEEEECCB
T ss_pred             CC------------------CCHH---HHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            10                  0222   88877766621    122 89999999888

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.27  E-value=1.4e-10  Score=100.43  Aligned_cols=156  Identities=12%  Similarity=0.032  Sum_probs=99.2

Q ss_pred             CCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCC---------ccc----c-c-----cCCCeEEEEecCCCH--H
Q 042242           28 KNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKP---------EIT----A-I-----QSSSYCFISCDLLNP--L   84 (303)
Q Consensus        28 ~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~---------~~~----~-~-----~~~~~~~~~~D~~~~--~   84 (303)
                      +|+++||||++  .||.+++++|+ ..|++|++.+|++         .+.    . .     ....+.++.+|+.+.  +
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la-~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELS-KRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHH-HCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            57999999875  99999999999 6899999777554         110    0 0     112367888898877  5


Q ss_pred             ------------------HHHHHHhc-------cCceeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           85 ------------------DIKRKLTL-------LEDVTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        85 ------------------~l~~~~~~-------~~~V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                                        ++.++++.       +|.++|.|+..      ....+.....+.+++|+.++..+++++...
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              55555543       45577776532      122334555568999999999999998876


Q ss_pred             cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC-ccchHHHHHHHHH---------Hh--cCCcceEEecCC
Q 042242          134 AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS-NNFYYVLEDLLKE---------KL--AGKVAWSVHRPG  201 (303)
Q Consensus       134 ~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~-~~~~y~~~k~~~e---------~~--~~~~~~~ilRp~  201 (303)
                      ...-.+++.+++...+...                +.  .. .   |+.+|....         +.  .+ +++..+.||
T Consensus       161 m~~~g~Iv~isS~~~~~~~----------------~~--~~~~---Y~asKaal~~~~~~la~el~~~~g-I~vn~v~PG  218 (329)
T 3lt0_A          161 MKPQSSIISLTYHASQKVV----------------PG--YGGG---MSSAKAALESDTRVLAYHLGRNYN-IRINTISAG  218 (329)
T ss_dssp             EEEEEEEEEEECGGGTSCC----------------TT--CTTT---HHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEC
T ss_pred             HhhCCeEEEEeCccccCCC----------------Cc--chHH---HHHHHHHHHHHHHHHHHHhCCccC-eEEEEEecc
Confidence            2211345555443222100                00  11 3   777665443         22  25 999999999


Q ss_pred             ceeec
Q 042242          202 LLLGS  206 (303)
Q Consensus       202 ~v~G~  206 (303)
                      .|..+
T Consensus       219 ~v~T~  223 (329)
T 3lt0_A          219 PLKSR  223 (329)
T ss_dssp             CCCCH
T ss_pred             eeech
Confidence            88763

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.26  E-value=1.4e-10  Score=99.94  Aligned_cols=221  Identities=11%  Similarity=0.003  Sum_probs=111.4

Q ss_pred             CCCCEEEEEcC--CChhHHHHHHHHhhcCCCeEEEEecCC-----------cccc----------------ccCC-----
Q 042242           26 DAKNVAVIFGV--TGLVGKELARRLISTANWKVYGIARKP-----------EITA----------------IQSS-----   71 (303)
Q Consensus        26 ~~~~~vlVtGa--tG~iG~~l~~~L~~~~g~~V~~~~r~~-----------~~~~----------------~~~~-----   71 (303)
                      +.+|+++||||  +|+||++++++|+ +.|++|++++|++           ....                ....     
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLR-AAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV   85 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHH-HTTCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHH-HCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence            34689999999  8999999999999 6899999998642           1100                0000     


Q ss_pred             CeEEEEecC------------CC--------HHHHHHHHh-------ccCceeEEeecc------cccCChHHHHHHHHH
Q 042242           72 SYCFISCDL------------LN--------PLDIKRKLT-------LLEDVTHIFWVT------WASQFASDMHKCCEQ  118 (303)
Q Consensus        72 ~~~~~~~D~------------~~--------~~~l~~~~~-------~~~~V~~~~~~~------~~~~~~~~~~~~~~~  118 (303)
                      ...++.+|+            +|        .++++++++       .+|.++|.++..      ....+..+....+++
T Consensus        86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v  165 (319)
T 2ptg_A           86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS  165 (319)
T ss_dssp             CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence            024444442            22        223444433       456688887642      122344455568999


Q ss_pred             HHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH--------HH-HHh
Q 042242          119 NKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL--------LK-EKL  189 (303)
Q Consensus       119 n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~--------~~-e~~  189 (303)
                      |+.++..+++++.....+-.+++.+++...+...          +      .. ...   |+.+|.        +. |+.
T Consensus       166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~------~~-~~~---Y~asKaal~~l~~~la~el~  225 (319)
T 2ptg_A          166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI----------P------GY-GGG---MSSAKAALESDCRTLAFEAG  225 (319)
T ss_dssp             HTHHHHHHHHHHGGGEEEEEEEEEEEECC--------------------------------------THHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcCceEEEEecccccccc----------C------cc-chh---hHHHHHHHHHHHHHHHHHhc
Confidence            9999999999988752111234443332121000          0      00 011   444332        22 232


Q ss_pred             --cCCcceEEecCCceeecCCCCccchhhHHHHH-HHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          190 --AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVY-GAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       190 --~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                        .+ +++..++|+.|..+.......  .....+ .....    . ....      ..+..+.+++++|.++++++....
T Consensus       226 ~~~g-Irvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~----~-~~~~------~p~~r~~~peevA~~v~~L~s~~~  291 (319)
T 2ptg_A          226 RARA-VRVNCISAGPLKSRAASAIGK--AGDKTFIDLAID----Y-SEAN------APLQKELESDDVGRAALFLLSPLA  291 (319)
T ss_dssp             HHHC-CEEEEEEECCCC--------------------------------------------CCCHHHHHHHHHHHTSGGG
T ss_pred             cccC-eeEEEEeeCCccChhhhhccc--ccchhhHHHHHH----H-Hhcc------CCCCCCCCHHHHHHHHHHHhCccc
Confidence              35 999999999987642111000  000000 00000    0 0000      111125578999999999886533


Q ss_pred             CcCCCCceEEeecCCC
Q 042242          267 ISSTKGQAFNAINGPR  282 (303)
Q Consensus       267 ~~~~~g~~yni~~~~~  282 (303)
                      .. ..|+.+.+.++..
T Consensus       292 ~~-itG~~i~vdGG~~  306 (319)
T 2ptg_A          292 RA-VTGATLYVDNGLH  306 (319)
T ss_dssp             TT-CCSCEEEESTTCT
T ss_pred             CC-ccCCEEEECCCce
Confidence            21 4568898888754

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.25  E-value=7.4e-10  Score=95.17  Aligned_cols=218  Identities=13%  Similarity=0.006  Sum_probs=120.0

Q ss_pred             CCCCEEEEEcC--CChhHHHHHHHHhhcCCCeEEEEecCCc-----------cc---c-ccCC----CeEEEEecC----
Q 042242           26 DAKNVAVIFGV--TGLVGKELARRLISTANWKVYGIARKPE-----------IT---A-IQSS----SYCFISCDL----   80 (303)
Q Consensus        26 ~~~~~vlVtGa--tG~iG~~l~~~L~~~~g~~V~~~~r~~~-----------~~---~-~~~~----~~~~~~~D~----   80 (303)
                      +++|+++||||  +|+||++++++|+ +.|++|++++|++.           ..   . ....    ...++.+|+    
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLA-SAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK   85 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHH-TTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHH-HCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence            34689999999  8999999999999 68999999986420           00   0 0001    024444443    


Q ss_pred             --------CC--------HHHHHHHHh-------ccCceeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHHh
Q 042242           81 --------LN--------PLDIKRKLT-------LLEDVTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAIL  131 (303)
Q Consensus        81 --------~~--------~~~l~~~~~-------~~~~V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~~  131 (303)
                              +|        .++++++++       .+|.++|.++..      ....+..+..+.+++|+.++..+++++.
T Consensus        86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~  165 (315)
T 2o2s_A           86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG  165 (315)
T ss_dssp             TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred             cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence                    22        334444443       456678876532      1223345555689999999999999987


Q ss_pred             hccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------Hh--cCCcceEEecC
Q 042242          132 PRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KL--AGKVAWSVHRP  200 (303)
Q Consensus       132 ~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~--~~~~~~~ilRp  200 (303)
                      ....+-.+++.+++...+...                +.. ..+   |+.+|...+         +.  .+ +++..++|
T Consensus       166 ~~m~~~g~Iv~isS~~~~~~~----------------~~~-~~~---Y~asKaal~~l~~~la~el~~~~g-Irvn~v~P  224 (315)
T 2o2s_A          166 PIMNEGGSAVTLSYLAAERVV----------------PGY-GGG---MSSAKAALESDTRTLAWEAGQKYG-VRVNAISA  224 (315)
T ss_dssp             TTEEEEEEEEEEEEGGGTSCC----------------TTC-CTT---HHHHHHHHHHHHHHHHHHHHHHTC-CEEEEEEE
T ss_pred             HHHhcCCEEEEEecccccccC----------------CCc-cHH---HHHHHHHHHHHHHHHHHHhCcccC-eEEEEEec
Confidence            652111244444432221000                000 013   777665443         22  24 99999999


Q ss_pred             CceeecCCCCccc-hhhHH-HHHH-HHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEe
Q 042242          201 GLLLGSSHRSLYN-FLGCL-CVYG-AVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNA  277 (303)
Q Consensus       201 ~~v~G~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni  277 (303)
                      |.|..+....... ..... .... .+..  ..|             +..+.+++++|.++++++...... ..|+.+.+
T Consensus       225 G~v~T~~~~~~~~~~~~~~~~~~~~~~~~--~~p-------------~~r~~~pedvA~~v~~L~s~~~~~-itG~~i~v  288 (315)
T 2o2s_A          225 GPLKSRAASAIGKSGEKSFIDYAIDYSYN--NAP-------------LRRDLHSDDVGGAALFLLSPLARA-VSGVTLYV  288 (315)
T ss_dssp             CCCCCHHHHHTTCSSSSCHHHHHHHHHHH--HSS-------------SCCCCCHHHHHHHHHHHTSGGGTT-CCSCEEEE
T ss_pred             ccccchhhhhccccccchhHHHHHHHHhc--cCC-------------CCCCCCHHHHHHHHHHHhCchhcc-CcCCEEEE
Confidence            9887631000000 00000 0000 0000  011             112457889999999988643321 34688888


Q ss_pred             ecCC
Q 042242          278 INGP  281 (303)
Q Consensus       278 ~~~~  281 (303)
                      .++.
T Consensus       289 dGG~  292 (315)
T 2o2s_A          289 DNGL  292 (315)
T ss_dssp             STTG
T ss_pred             CCCe
Confidence            7774

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.00  E-value=1.7e-09  Score=103.76  Aligned_cols=165  Identities=18%  Similarity=0.222  Sum_probs=110.0

Q ss_pred             cccccCCcCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc--------c--cCCCeEEEEecCCCH
Q 042242           15 NKVSVNRGREVDAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA--------I--QSSSYCFISCDLLNP   83 (303)
Q Consensus        15 ~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~--------~--~~~~~~~~~~D~~~~   83 (303)
                      +|+.........++++++||||+|.||+.++++|.++.|.+ |++++|+.....        +  ...++.++.+|++|.
T Consensus       517 GKvVl~~~~~~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~  596 (795)
T 3slk_A          517 GKLVLTMPPVWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADR  596 (795)
T ss_dssp             BEEEEECCCCCCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred             ceEEEecCcccccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCH
Confidence            34444433334467899999999999999999997347885 999999843321        1  123578899999999


Q ss_pred             HHHHHHHhcc------CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeeccccccccc
Q 042242           84 LDIKRKLTLL------EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQ  153 (303)
Q Consensus        84 ~~l~~~~~~~------~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~  153 (303)
                      ++++++++.+      |.++|.|+...    ...+.++....++.|+.++.++.+++...   + +|+.+||...+.+..
T Consensus       597 ~~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~---l-~iV~~SS~ag~~g~~  672 (795)
T 3slk_A          597 ETLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD---V-ALVLFSSVSGVLGSG  672 (795)
T ss_dssp             HHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT---S-EEEEEEETHHHHTCS
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC---C-EEEEEccHHhcCCCC
Confidence            9999998765      34777765432    23344555568999999999999987432   3 555555432321110


Q ss_pred             CCCcccccCCcCcCCCCCCCCccchHHHHHHHHH-----H-hcCCcceEEecCCceee
Q 042242          154 GLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE-----K-LAGKVAWSVHRPGLLLG  205 (303)
Q Consensus       154 ~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e-----~-~~~~~~~~ilRp~~v~G  205 (303)
                      .                  ...   |+.+|.+.+     + ..+ ++++.+.||.+-.
T Consensus       673 g------------------~~~---YaAaka~~~alA~~~~~~G-i~v~sI~pG~v~t  708 (795)
T 3slk_A          673 G------------------QGN---YAAANSFLDALAQQRQSRG-LPTRSLAWGPWAE  708 (795)
T ss_dssp             S------------------CHH---HHHHHHHHHHHHHHHHHTT-CCEEEEEECCCSC
T ss_pred             C------------------CHH---HHHHHHHHHHHHHHHHHcC-CeEEEEECCeECc
Confidence            0                  122   777665544     1 234 9999999988765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.99  E-value=6.1e-10  Score=81.01  Aligned_cols=72  Identities=15%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      |+++|+|+|+ |++|+.+++.|+ ..| ++|++++|++.+.. ....++.++.+|+.+.+.+.+.++++|.|++++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~-~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLK-TSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHH-HCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHH-hCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4579999999 999999999999 567 99999999876543 234678889999999999999999988888875

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=98.95  E-value=3.4e-08  Score=91.97  Aligned_cols=219  Identities=15%  Similarity=0.048  Sum_probs=128.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---c--cCCCeEEEEecC-CCHHHH-HHH---HhccCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---I--QSSSYCFISCDL-LNPLDI-KRK---LTLLED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~--~~~~~~~~~~D~-~~~~~l-~~~---~~~~~~   95 (303)
                      +++|+++||||++.||+.+++.|+ +.|++|++.+|+.....   .  ....+..+.+|+ .+.+.+ +++   +..+|.
T Consensus       320 l~gkvalVTGas~GIG~a~A~~la-~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDi  398 (604)
T 2et6_A          320 LKDKVVLITGAGAGLGKEYAKWFA-KYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDI  398 (604)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCeEEEECcchHHHHHHHHHHH-HCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCE
Confidence            456899999999999999999999 68999999887433211   1  122355667788 554433 223   234566


Q ss_pred             eeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhcc--CCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRA--KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      ++|.|+...    ...+..+....+++|+.++..+.+++....  .+--+++.+++...+.+.          +      
T Consensus       399 LVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~----------~------  462 (604)
T 2et6_A          399 LVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGN----------F------  462 (604)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC----------T------
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC----------C------
Confidence            777766432    233445556689999999999988876641  222345555442221010          0      


Q ss_pred             CCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      .  ...   |+.+|....         .. .+ +++..+.|+.  .  +...    ...     .    ...        
T Consensus       463 ~--~~~---Y~asKaal~~lt~~la~El~~~g-IrVn~v~PG~--~--T~m~----~~~-----~----~~~--------  511 (604)
T 2et6_A          463 G--QAN---YSSSKAGILGLSKTMAIEGAKNN-IKVNIVAPHA--E--TAMT----LSI-----M----REQ--------  511 (604)
T ss_dssp             T--BHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECC--C--CCC-----------------------------
T ss_pred             C--Chh---HHHHHHHHHHHHHHHHHHhCccC-eEEEEEcCCC--C--Cccc----ccc-----C----chh--------
Confidence            0  112   777665443         22 23 9999999973  2  1111    000     0    000        


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC-----------------CCccHHhhHHHHHHHhccc
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING-----------------PRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~-----------------~~~s~~e~~~~i~~~~g~~  299 (303)
                           .......+++|.++++++.....  ..|+.+.+.++                 ...+..++.+.+.+.....
T Consensus       512 -----~~~~~~pe~vA~~v~~L~s~~~~--itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  581 (604)
T 2et6_A          512 -----DKNLYHADQVAPLLVYLGTDDVP--VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITDFT  581 (604)
T ss_dssp             ------CCSSCGGGTHHHHHHTTSTTCC--CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTCCS
T ss_pred             -----hccCCCHHHHHHHHHHHhCCccC--CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhccc
Confidence                 00123567788888887654332  34577777654                 2357788888777766554

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=98.90  E-value=6.6e-08  Score=85.53  Aligned_cols=76  Identities=8%  Similarity=0.027  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcCCChhHHH--HHHHHhhcCCCeEEEEecCCcccc-------------------ccCCCeEEEEecCCCHH
Q 042242           26 DAKNVAVIFGVTGLVGKE--LARRLISTANWKVYGIARKPEITA-------------------IQSSSYCFISCDLLNPL   84 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~--l~~~L~~~~g~~V~~~~r~~~~~~-------------------~~~~~~~~~~~D~~~~~   84 (303)
                      ..+|++|||||++.||.+  ++..|. ..|++|++++|+.....                   .....+..+.+|++|.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala-~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFG-GPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHS-SSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHH-hCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence            467899999999999999  999997 67999999998654310                   11235778899999999


Q ss_pred             HHHHHHhc-------cCceeEEeec
Q 042242           85 DIKRKLTL-------LEDVTHIFWV  102 (303)
Q Consensus        85 ~l~~~~~~-------~~~V~~~~~~  102 (303)
                      +++++++.       +|.++|.++.
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcc
Confidence            88777654       3445665543

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=98.90  E-value=6.4e-08  Score=85.13  Aligned_cols=64  Identities=11%  Similarity=-0.010  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCcccc-------------------ccCCCeEEEEecCCCHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITA-------------------IQSSSYCFISCDLLNPLDI   86 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~-------------------~~~~~~~~~~~D~~~~~~l   86 (303)
                      .+|++|||||++.||+++++.|. . .|++|++++|+.....                   .....+..+.+|++|.+++
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA-~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAA-FGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHH-HHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHH-HhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence            47899999999999999999999 6 7999999998754321                   0123467889999999887


Q ss_pred             HHHHh
Q 042242           87 KRKLT   91 (303)
Q Consensus        87 ~~~~~   91 (303)
                      +++++
T Consensus       139 ~~~v~  143 (422)
T 3s8m_A          139 AQVIE  143 (422)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=98.86  E-value=4.1e-08  Score=99.84  Aligned_cols=156  Identities=13%  Similarity=0.049  Sum_probs=102.8

Q ss_pred             CCCCEEEEEcCCCh-hHHHHHHHHhhcCCCeEEEEe-cCCcccc-----c----c--CCCeEEEEecCCCHHHHHHHHh-
Q 042242           26 DAKNVAVIFGVTGL-VGKELARRLISTANWKVYGIA-RKPEITA-----I----Q--SSSYCFISCDLLNPLDIKRKLT-   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~-iG~~l~~~L~~~~g~~V~~~~-r~~~~~~-----~----~--~~~~~~~~~D~~~~~~l~~~~~-   91 (303)
                      +++|++|||||+|. ||.++++.|+ ..|++|++++ |+.....     .    .  ..++.++.+|++|.+++.++++ 
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La-~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~  751 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLL-QGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF  751 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence            45689999999998 9999999999 6899999985 5443321     0    0  2357889999999998887764 


Q ss_pred             ------------ccCceeEEeeccccc-----CC--hHHHHHHHHHHHHHHHHHHHHHhhc---c-CCccEEEEeecccc
Q 042242           92 ------------LLEDVTHIFWVTWAS-----QF--ASDMHKCCEQNKAMMCNALNAILPR---A-KALKHVSLQTGMKH  148 (303)
Q Consensus        92 ------------~~~~V~~~~~~~~~~-----~~--~~~~~~~~~~n~~~~~~ll~~~~~~---~-~~~~~~~~~s~~~~  148 (303)
                                  .+|.+||.|+.....     ..  .......+++|+.++..++++++..   . .+-.+++.+|+...
T Consensus       752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag  831 (1887)
T 2uv8_A          752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG  831 (1887)
T ss_dssp             HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred             HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence                        245688887653222     12  3444568999999999999887422   1 11235555544222


Q ss_pred             cccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHHH------hc--CC-cceEEecCCceee
Q 042242          149 YVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEK------LA--GK-VAWSVHRPGLLLG  205 (303)
Q Consensus       149 y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e~------~~--~~-~~~~ilRp~~v~G  205 (303)
                      +.            +        ....   |+.+|...+.      ..  .. ++++.+.||.+.+
T Consensus       832 ~~------------g--------g~~a---YaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~t  874 (1887)
T 2uv8_A          832 TF------------G--------GDGM---YSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG  874 (1887)
T ss_dssp             CS------------S--------CBTT---HHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEEC
T ss_pred             cc------------C--------CCch---HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccc
Confidence            10            0        0123   7877754431      11  12 8899999999984

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=98.86  E-value=3e-08  Score=100.68  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=76.5

Q ss_pred             CCCCEEEEEcCCCh-hHHHHHHHHhhcCCCeEEEEecC-Ccccc---------cc--CCCeEEEEecCCCHHHHHHHHh-
Q 042242           26 DAKNVAVIFGVTGL-VGKELARRLISTANWKVYGIARK-PEITA---------IQ--SSSYCFISCDLLNPLDIKRKLT-   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~-iG~~l~~~L~~~~g~~V~~~~r~-~~~~~---------~~--~~~~~~~~~D~~~~~~l~~~~~-   91 (303)
                      +++|+||||||+|. ||.++++.|+ ..|++|++++++ .....         ..  ..++.++.+|++|.+++.++++ 
T Consensus       650 L~gKvaLVTGASgGgIG~aIAr~LA-~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~  728 (1878)
T 2uv9_A          650 FQGKHALMTGAGAGSIGAEVLQGLL-SGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY  728 (1878)
T ss_dssp             CTTCEEEEESCCTTSHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence            45689999999999 9999999999 689999998644 33211         01  2357889999999998888775 


Q ss_pred             ----------ccCceeEEeeccccc-----CC--hHHHHHHHHHHHHHHHHHHHHH
Q 042242           92 ----------LLEDVTHIFWVTWAS-----QF--ASDMHKCCEQNKAMMCNALNAI  130 (303)
Q Consensus        92 ----------~~~~V~~~~~~~~~~-----~~--~~~~~~~~~~n~~~~~~ll~~~  130 (303)
                                .+|.+||.|+.....     ..  .......+++|+.++..++..+
T Consensus       729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~  784 (1878)
T 2uv9_A          729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQ  784 (1878)
T ss_dssp             HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence                      245688887653221     22  3445568999999999888764

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=98.84  E-value=7e-08  Score=84.18  Aligned_cols=76  Identities=8%  Similarity=-0.031  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCcccc-------------------ccCCCeEEEEecCCCHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITA-------------------IQSSSYCFISCDLLNPLD   85 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~-------------------~~~~~~~~~~~D~~~~~~   85 (303)
                      ..+|++|||||++.||.++++.|+ . .|++|++++|+.....                   .....+..+.+|++|.++
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA-~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~  123 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAA-FGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI  123 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHH-HHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHH-HhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence            357899999999999999999999 6 7999999988654311                   012356788999999998


Q ss_pred             HHHHHhc-------cCceeEEeec
Q 042242           86 IKRKLTL-------LEDVTHIFWV  102 (303)
Q Consensus        86 l~~~~~~-------~~~V~~~~~~  102 (303)
                      ++++++.       +|.++|.++.
T Consensus       124 v~~~v~~i~~~~G~IDiLVNNAG~  147 (405)
T 3zu3_A          124 KQLTIDAIKQDLGQVDQVIYSLAS  147 (405)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCcc
Confidence            8777654       3445665543

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.6e-08  Score=99.94  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=76.9

Q ss_pred             CCCCEEEEEcCCCh-hHHHHHHHHhhcCCCeEEEEe-cCCcccc-----c--c----CCCeEEEEecCCCHHHHHHHHh-
Q 042242           26 DAKNVAVIFGVTGL-VGKELARRLISTANWKVYGIA-RKPEITA-----I--Q----SSSYCFISCDLLNPLDIKRKLT-   91 (303)
Q Consensus        26 ~~~~~vlVtGatG~-iG~~l~~~L~~~~g~~V~~~~-r~~~~~~-----~--~----~~~~~~~~~D~~~~~~l~~~~~-   91 (303)
                      +++|++|||||+|. ||+++++.|+ ..|++|++++ |+.....     .  .    ..++.++.+|++|.++++++++ 
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA-~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~  552 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLL-QGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF  552 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHH-HHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHH-HCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            45689999999998 9999999999 6899999884 5443321     1  0    1247788999999998887764 


Q ss_pred             ------------ccCceeEEeeccccc-----CC--hHHHHHHHHHHHHHHHHHHHHHh
Q 042242           92 ------------LLEDVTHIFWVTWAS-----QF--ASDMHKCCEQNKAMMCNALNAIL  131 (303)
Q Consensus        92 ------------~~~~V~~~~~~~~~~-----~~--~~~~~~~~~~n~~~~~~ll~~~~  131 (303)
                                  .+|.++|.|+.....     ..  .......+++|+.++..++++++
T Consensus       553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~  611 (1688)
T 2pff_A          553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQK  611 (1688)
T ss_dssp             HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        245678887653222     12  34455688999999999988873

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=98.81  E-value=1.5e-07  Score=87.75  Aligned_cols=106  Identities=15%  Similarity=0.045  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC---------cccc-----ccCCCeEEEEecCCCHHHHHHH--
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP---------EITA-----IQSSSYCFISCDLLNPLDIKRK--   89 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~---------~~~~-----~~~~~~~~~~~D~~~~~~l~~~--   89 (303)
                      +++|+++||||++.||+.+++.|+ ..|++|++.+|+.         ....     ....+.. ..+|+.|.++++++  
T Consensus         6 l~gkvalVTGas~GIG~a~A~~la-~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~-~~~d~~d~~~~~~~v~   83 (604)
T 2et6_A            6 FKDKVVIITGAGGGLGKYYSLEFA-KLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV-AVADYNNVLDGDKIVE   83 (604)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECC-----------CHHHHHHHHHHHTTCE-EEEECCCTTCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCe-EEEEcCCHHHHHHHHH
Confidence            456899999999999999999999 6899999998764         1111     1111222 23566665433332  


Q ss_pred             -----HhccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           90 -----LTLLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        90 -----~~~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                           +..+|.++|.|+...    ...+..+....+++|+.++..+.+++...
T Consensus        84 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~  136 (604)
T 2et6_A           84 TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPY  136 (604)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                 234566777766422    23344555668999999999998887654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.77  E-value=2.1e-08  Score=86.28  Aligned_cols=107  Identities=12%  Similarity=0.035  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc---ccCCCeE-EEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA---IQSSSYC-FISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~---~~~~~~~-~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      +++||+|+||+|++|+.++..|+ ..+  ++|+++++++....   +...... .+.+ +.+..++.++++++|.|+|++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~-~~~t~d~~~al~gaDvVi~~a   84 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRG-FLGQQQLEAALTGMDLIIVPA   84 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEE-EESHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHhHHHHhhcccccceEEE-EeCCCCHHHHcCCCCEEEEcC
Confidence            45699999999999999999998 467  78999998765211   1111111 1122 233556788999999999997


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      +.........  .++...|+.++.++++++.+.++..
T Consensus        85 g~~~~~g~~r--~dl~~~N~~~~~~i~~~i~~~~p~~  119 (326)
T 1smk_A           85 GVPRKPGMTR--DDLFKINAGIVKTLCEGIAKCCPRA  119 (326)
T ss_dssp             CCCCCSSCCC--SHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CcCCCCCCCH--HHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            7543222222  2378999999999999999886543

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.67  E-value=1.9e-08  Score=86.68  Aligned_cols=105  Identities=10%  Similarity=0.033  Sum_probs=74.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-------eEEEEecC----Ccccc-----ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-------KVYGIARK----PEITA-----IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~----~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      .+||+||||+|+||++++..|+ ..++       +|+++++.    +.+..     +......+ ..|+....++.++++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~-~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIA-NGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            4689999999999999999998 5664       79999887    32111     11110111 135544456778999


Q ss_pred             ccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CC
Q 042242           92 LLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-KA  136 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~  136 (303)
                      ++|.|+|+++.....  ..+..+++..|+..+.++++++.+.+ +.
T Consensus        83 ~aD~Vi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~p~  126 (329)
T 1b8p_A           83 DADVALLVGARPRGP--GMERKDLLEANAQIFTVQGKAIDAVASRN  126 (329)
T ss_dssp             TCSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CCCEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999997754322  22333488999999999999999885 54

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.56  E-value=4.7e-08  Score=82.73  Aligned_cols=76  Identities=16%  Similarity=0.006  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc------cCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI------QSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .++++++||||+|.+|++++..|+ ..|++|++++|+..+...      ...++.++.+|+++.+++.+.++.+|.|+|+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~-~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLA-GEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            457899999999999999999999 678999999998654321      0124667889999999999999999888888


Q ss_pred             eec
Q 042242          100 FWV  102 (303)
Q Consensus       100 ~~~  102 (303)
                      ++.
T Consensus       196 ag~  198 (287)
T 1lu9_A          196 GAI  198 (287)
T ss_dssp             CCT
T ss_pred             CCc
Confidence            754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.47  E-value=5e-07  Score=96.11  Aligned_cols=119  Identities=14%  Similarity=0.035  Sum_probs=81.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc--------c--cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA--------I--QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~--------~--~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      .+|+++||||+|.||+.++++|. +.|++ |++++|+..+..        .  ...++.++.+|++|.++++++++.   
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la-~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLR-LRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHH-HCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999 67887 888888765421        1  123567788999999988877754   


Q ss_pred             ---cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecc
Q 042242           93 ---LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM  146 (303)
Q Consensus        93 ---~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~  146 (303)
                         +|.++|.|+...    ...+..+....++.|+.++.++.+++....+...+|+.+|+.
T Consensus      1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ 2022 (2512)
T 2vz8_A         1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSV 2022 (2512)
T ss_dssp             HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCH
T ss_pred             cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecch
Confidence               345777766422    112233334478899999999988887654444566666653

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.45  E-value=5.1e-07  Score=77.21  Aligned_cols=99  Identities=16%  Similarity=0.047  Sum_probs=67.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEec--CCcccc-----c-----cC-CCeEEEEecCCCHHHHHHHHhcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIAR--KPEITA-----I-----QS-SSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r--~~~~~~-----~-----~~-~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      +||+||||+|++|++++..|+ ..++  ++.++++  .+.+..     +     .. ..+.+...+    +++.++++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~-~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~ga   75 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLA-KEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDES   75 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTC
T ss_pred             CEEEEECCCChhHHHHHHHHH-hCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCC
Confidence            389999999999999999998 4554  5888887  432110     0     00 122332211    1245678999


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA  134 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~  134 (303)
                      |.|+|+++....  ......+++..|+..+.++++++++.+
T Consensus        76 D~Vi~~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~  114 (313)
T 1hye_A           76 DVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEIC  114 (313)
T ss_dssp             SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999875432  222333479999999999999999886

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.41  E-value=5.3e-07  Score=80.92  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc---cCCCeEEEEecCCCHHHHHHHHhccCceeEEeecc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI---QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~  103 (303)
                      ++++|+|+| +|++|+++++.|+ ..|++|++.+|++.+...   ...++..+.+|+.|.+++.++++++|.|+|++...
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~-~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLT-DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHH-TTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-hCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            357999998 8999999999999 688999999998765431   12347788899999999999999888888886542


Q ss_pred             cccCChHHHHHHHHH--H-------HHHHHHHHHHHhhcc
Q 042242          104 WASQFASDMHKCCEQ--N-------KAMMCNALNAILPRA  134 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~--n-------~~~~~~ll~~~~~~~  134 (303)
                      ...   .-....++.  +       .....++++++++.+
T Consensus        80 ~~~---~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aG  116 (450)
T 1ff9_A           80 FHA---TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAG  116 (450)
T ss_dssp             CHH---HHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTT
T ss_pred             cch---HHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCC
Confidence            211   111112221  2       235677888888764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.41  E-value=2e-07  Score=69.99  Aligned_cols=69  Identities=17%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~   98 (303)
                      +++|+|+|+ |.+|+.+++.|. ..|++|+++++++.... ....++.++.+|.++++.+.++ ++++|.|+.
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~-~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELT-AAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            468999996 999999999998 68999999999876543 2235788899999999888765 344553443

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.40  E-value=8.9e-07  Score=71.54  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC----------------CChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHH----
Q 042242           27 AKNVAVIFGV----------------TGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDI----   86 (303)
Q Consensus        27 ~~~~vlVtGa----------------tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l----   86 (303)
                      .+|+||||||                ||.+|.+++++++ ..|++|+++.|+.........++.++  |+...+.+    
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~-~~Ga~V~lv~~~~~~~~~~~~~~~~~--~v~s~~em~~~v   78 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLL-SAGYEVCLITTKRALKPEPHPNLSIR--EITNTKDLLIEM   78 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHH-HTTCEEEEEECTTSCCCCCCTTEEEE--ECCSHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHH-HCCCEEEEEeCCccccccCCCCeEEE--EHhHHHHHHHHH
Confidence            4689999999                9999999999999 68999999999764322112355554  55555433    


Q ss_pred             HHHHhccCceeEEeecc
Q 042242           87 KRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        87 ~~~~~~~~~V~~~~~~~  103 (303)
                      .+.+..+|.+++.|+.+
T Consensus        79 ~~~~~~~Dili~aAAvs   95 (232)
T 2gk4_A           79 QERVQDYQVLIHSMAVS   95 (232)
T ss_dssp             HHHGGGCSEEEECSBCC
T ss_pred             HHhcCCCCEEEEcCccc
Confidence            44455677788876654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.40  E-value=1e-07  Score=81.08  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=67.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEec--CCcccc-----c-----cCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIAR--KPEITA-----I-----QSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r--~~~~~~-----~-----~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      +||+||||+|++|++++..|+ ..++  ++.++++  .+.+..     .     ...++.+.. +  +    .+.++++|
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~-~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD   72 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIA-LRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSD   72 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCC
Confidence            489999999999999999998 4454  6888887  432211     0     012223322 1  1    34688899


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      .|+|+++.......  ...+++..|+..+.++++++.+.++...
T Consensus        73 vVi~~ag~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~~~  114 (303)
T 1o6z_A           73 VVVITAGIPRQPGQ--TRIDLAGDNAPIMEDIQSSLDEHNDDYI  114 (303)
T ss_dssp             EEEECCCCCCCTTC--CHHHHHHHHHHHHHHHHHHHHTTCSCCE
T ss_pred             EEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence            89999765432222  2334789999999999999998865433

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.39  E-value=3.3e-07  Score=68.75  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~~~  100 (303)
                      ++++|+|+|+ |.+|+.+++.|. ..|++|++++|++.... ....+..++.+|..+.+.+.++ +.++|.|+++.
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~-~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~   78 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELH-RMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAI   78 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHH-HTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred             cCCcEEEECC-CHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECC
Confidence            3468999997 999999999998 67899999999865433 2233567788999998877765 67777666653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.37  E-value=7.7e-07  Score=67.77  Aligned_cols=71  Identities=14%  Similarity=0.109  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-c---c-ccCCCeEEEEecCCCHHHHHHH-HhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-T---A-IQSSSYCFISCDLLNPLDIKRK-LTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-~---~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~~   99 (303)
                      +.++|+|+|+ |.+|+.+++.|. ..|++|++++|++.. .   . ....++.++.+|.++++.+.++ +++++.|+.+
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~-~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLN-QRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHH-HTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHH-HCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence            4578999995 999999999998 689999999997531 1   1 1235789999999999988876 7777744444

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.34  E-value=7.7e-07  Score=77.85  Aligned_cols=71  Identities=18%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .+||+|+|| |++|+.+++.|.  ..++|++.+|+..+.....+.+..+.+|+.|.+++.+.++++|.|++++.
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~--~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLK--DEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHT--TTSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             ccEEEEECC-CHHHHHHHHHHh--cCCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            468999997 999999999986  46899999998765443455677889999999999999999998888754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.28  E-value=2.7e-06  Score=64.89  Aligned_cols=71  Identities=17%  Similarity=0.107  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-c-CCCeEEEEecCCCHHHHHHH-HhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-Q-SSSYCFISCDLLNPLDIKRK-LTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~-~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~~   99 (303)
                      ..++|+|+|+ |.+|+.+++.|. ..|++|++++|++..... . ..++.++.+|..+.+.+.++ ++++|.|+.+
T Consensus        18 ~~~~v~IiG~-G~iG~~la~~L~-~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           18 KSKYIVIFGC-GRLGSLIANLAS-SSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            4579999995 999999999998 688999999998766442 2 34677888999888777655 6667655544

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.24  E-value=1.2e-06  Score=78.77  Aligned_cols=75  Identities=16%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      ++++|+|+|+ |++|+.++..|++..+++|++++|++.+..  ....++.++.+|+.|.+++.++++++|.|++++..
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~   98 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPY   98 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence            4579999997 999999999999444889999999876542  11135777889999999999999999988888553

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.19  E-value=1.3e-06  Score=65.05  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-cc-CCCeEEEEecCCCHHHHHHH-HhccCceeEE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQ-SSSYCFISCDLLNPLDIKRK-LTLLEDVTHI   99 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~-~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~~   99 (303)
                      .++|+|+|+ |++|+.+++.|. ..|++|++++|++.... .. ..++.++.+|..+.+.+.+. ++++|.|+++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~-~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLS-EKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence            368999996 999999999998 57899999999865432 11 23677788999988877654 5667756665

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.15  E-value=2.8e-06  Score=63.60  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~   97 (303)
                      +.++|+|+| .|.+|+.+++.|. ..|++|+++++++.... ....++.++.+|.++.+.++++ ++.+|.|+
T Consensus         6 ~~~~viIiG-~G~~G~~la~~L~-~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            6 ICNHALLVG-YGRVGSLLGEKLL-ASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCCCEEEEC-cCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEE
Confidence            557899999 5999999999998 68999999999987643 2336888999999999887764 45555333

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.11  E-value=8.4e-06  Score=69.60  Aligned_cols=106  Identities=10%  Similarity=0.030  Sum_probs=71.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc---ccCCCeEEEEecCCC---HHHHHHHHhccCceeEEe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA---IQSSSYCFISCDLLN---PLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~---~~~l~~~~~~~~~V~~~~  100 (303)
                      +||.|+||+|++|+.++..|+ ..+  .+|.++++++....   +.+....   +++..   ..+++++++++|.|++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~~~a~dL~~~~~~---~~l~~~~~t~d~~~a~~~aDvVvi~a   76 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGVAADLSHIETR---ATVKGYLGPEQLPDCLKGCDVVVIPA   76 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHHHHHHTTSSSS---CEEEEEESGGGHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccHHHHHHHhccCcC---ceEEEecCCCCHHHHhCCCCEEEECC
Confidence            389999999999999999998 566  68999999872211   1111000   11111   134667899999888887


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      +.......  ...+.+..|...+..+++.+.+.++....+
T Consensus        77 g~~~~~g~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi  114 (314)
T 1mld_A           77 GVPRKPGM--TRDDLFNTNATIVATLTAACAQHCPDAMIC  114 (314)
T ss_dssp             SCCCCTTC--CGGGGHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             CcCCCCCC--cHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence            65432221  222368999999999999999887654343

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.07  E-value=3.7e-06  Score=74.51  Aligned_cols=71  Identities=13%  Similarity=0.050  Sum_probs=57.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC---CeEEEEecCCccccc-----c---CCCeEEEEecCCCHHHHHHHHhc--cCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN---WKVYGIARKPEITAI-----Q---SSSYCFISCDLLNPLDIKRKLTL--LED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~-----~---~~~~~~~~~D~~~~~~l~~~~~~--~~~   95 (303)
                      ++|+|+|| |+||+.+++.|+ ..+   .+|++.+|+..+...     .   ..++..+.+|+.|.+++.++++.  +|.
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMA-MNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            68999998 999999999998 455   389999998765421     1   13588899999999999999998  677


Q ss_pred             eeEEee
Q 042242           96 VTHIFW  101 (303)
Q Consensus        96 V~~~~~  101 (303)
                      |+|++.
T Consensus        80 Vin~ag   85 (405)
T 4ina_A           80 VLNIAL   85 (405)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            888854

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.07  E-value=1.4e-06  Score=74.82  Aligned_cols=107  Identities=12%  Similarity=0.021  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC--e-----EEEEecCCc--ccc-----cc---CCCeEEEEecCCCHHHHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW--K-----VYGIARKPE--ITA-----IQ---SSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~-----V~~~~r~~~--~~~-----~~---~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      .+||+||||+|+||++++..|+ ..+.  +     +.++++.+.  ...     +.   .+-..    ++.-.....+.+
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~-~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~~   77 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIG-NGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK----DVIATDKEEIAF   77 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHH-TTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE----EEEEESCHHHHT
T ss_pred             CeEEEEECCCCHHHHHHHHHHH-hCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccC----CEEEcCCcHHHh
Confidence            4689999999999999999998 4544  4     888888642  110     11   11111    111122355789


Q ss_pred             hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        91 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      +++|.|+++++..-  ....+..+.++.|+..+.++++++.+.+++-.+++
T Consensus        78 ~daDvVvitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vi  126 (333)
T 5mdh_A           78 KDLDVAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI  126 (333)
T ss_dssp             TTCSEEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             CCCCEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            99998888865432  22223334799999999999999999876543333

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.04  E-value=2.5e-05  Score=62.88  Aligned_cols=73  Identities=11%  Similarity=0.027  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC----------------CChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHH
Q 042242           26 DAKNVAVIFGV----------------TGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRK   89 (303)
Q Consensus        26 ~~~~~vlVtGa----------------tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~   89 (303)
                      +.+|+||||||                ||.+|.+++++|+ ..|++|++++|+..- .. ..++.  .+|+.+.+++.+.
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~-~~Ga~V~l~~~~~~l-~~-~~g~~--~~dv~~~~~~~~~   80 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAA-RRGANVTLVSGPVSL-PT-PPFVK--RVDVMTALEMEAA   80 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHH-HTTCEEEEEECSCCC-CC-CTTEE--EEECCSHHHHHHH
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHH-HCCCEEEEEECCccc-cc-CCCCe--EEccCcHHHHHHH
Confidence            46799999999                6999999999999 689999999886521 11 22343  4688887655443


Q ss_pred             ----HhccCceeEEeecc
Q 042242           90 ----LTLLEDVTHIFWVT  103 (303)
Q Consensus        90 ----~~~~~~V~~~~~~~  103 (303)
                          +..+|.+++.|+.+
T Consensus        81 v~~~~~~~Dili~~Aav~   98 (226)
T 1u7z_A           81 VNASVQQQNIFIGCAAVA   98 (226)
T ss_dssp             HHHHGGGCSEEEECCBCC
T ss_pred             HHHhcCCCCEEEECCccc
Confidence                34567677776653

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=97.99  E-value=0.00015  Score=77.91  Aligned_cols=107  Identities=7%  Similarity=0.028  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcCCCh-hHHHHHHHHhhcCCCeEEEEecCCcc-----cc-----cc--CCCeEEEEecCCCHHHHHHHHhc
Q 042242           26 DAKNVAVIFGVTGL-VGKELARRLISTANWKVYGIARKPEI-----TA-----IQ--SSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~-iG~~l~~~L~~~~g~~V~~~~r~~~~-----~~-----~~--~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      +.+|++|||||++. ||..+++.|+ ..|++|++++|+...     ..     ..  ...+..+.+|++|.++++++++.
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La-~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLL-DGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHH-HTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHH-HCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence            56899999999999 9999999999 689999999998765     11     11  12466789999999988877643


Q ss_pred             c-----------CceeEEeec-----cc---c---cCChH--HHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 L-----------EDVTHIFWV-----TW---A---SQFAS--DMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 ~-----------~~V~~~~~~-----~~---~---~~~~~--~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      +           |.++|.|+.     ..   .   ....+  ..+..+++|+.++..++..+...
T Consensus      2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~ 2277 (3089)
T 3zen_D         2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKI 2277 (3089)
T ss_dssp             HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2           334444443     00   0   00111  11234788888888887776653

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.93  E-value=4e-06  Score=72.22  Aligned_cols=104  Identities=14%  Similarity=0.059  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----cc---CCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----IQ---SSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~~---~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +++||.|+|++|++|+.++..|+ ..|  .+|.++++.+.+..     +.   .+..     ++.-.....+.++++|.|
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~-~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~-----~i~~t~d~~~al~dADvV   80 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAA-MMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGL-----NLTFTSDIKEALTDAKYI   80 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHH-HTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTC-----CCEEESCHHHHHTTEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-hcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCC-----ceEEcCCHHHHhCCCCEE
Confidence            45799999999999999999888 455  47999998765321     10   1111     111112355688999977


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      +.+++.+  .....+..+.+..|......+.+.+.+.++.-+
T Consensus        81 vitaG~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           81 VSSGGAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             EECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             EEccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            7776543  222333445899999999999999998876654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.91  E-value=7.4e-06  Score=66.13  Aligned_cols=67  Identities=16%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHH-HhccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRK-LTLLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~   97 (303)
                      ++|+|+|+ |.+|+.+++.|. ..|++|+++++++.....  ...++.++.+|.++.+.++++ ++.+|.|+
T Consensus         1 M~iiIiG~-G~~G~~la~~L~-~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSML-SRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            47999995 999999999998 689999999998765431  224788999999999988876 56666444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.91  E-value=5.3e-06  Score=65.02  Aligned_cols=72  Identities=21%  Similarity=0.159  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH--HhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK--LTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~--~~~~~~V~~~   99 (303)
                      ..+++|+|+| .|.+|..+++.|. .. |++|++++|++.+.. ....++.++.+|..+.+.+.++  ++++|.|+.+
T Consensus        37 ~~~~~v~IiG-~G~~G~~~a~~L~-~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           37 PGHAQVLILG-MGRIGTGAYDELR-ARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             CTTCSEEEEC-CSHHHHHHHHHHH-HHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHH-hccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence            3456899999 6999999999998 67 899999999876543 2234677888999998877765  5666644443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.82  E-value=1.2e-05  Score=65.73  Aligned_cols=69  Identities=16%  Similarity=0.049  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~~   99 (303)
                      ..++|+|+|+ |.+|+.+++.|. ..|+ |++++|++.... .. .++.++.+|.++.+.+.++ +++++.|+.+
T Consensus         8 ~~~~viI~G~-G~~G~~la~~L~-~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            8 KSRHVVICGW-SESTLECLRELR-GSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             --CEEEEESC-CHHHHHHHHHST-TSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred             CCCEEEEECC-ChHHHHHHHHHH-hCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence            3578999996 999999999998 6789 999999876543 23 6789999999999988776 7777744443

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.56  E-value=0.00034  Score=59.77  Aligned_cols=102  Identities=13%  Similarity=0.049  Sum_probs=69.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      .++|.|+|+ |++|+.++..|+ ..|+  +|+++++++.+..           ....++.+...|.       +.++++|
T Consensus         5 ~~kI~ViGa-G~vG~~~a~~l~-~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~-------~a~~~aD   75 (326)
T 3pqe_A            5 VNKVALIGA-GFVGSSYAFALI-NQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY-------EDCKDAD   75 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG-------GGGTTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH-------HHhCCCC
Confidence            468999995 999999999998 4565  8999998765421           1112344443331       4678888


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      .|+.+++.+.  ....+..+.+..|......+.+.+.+.++....+
T Consensus        76 vVvi~ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vl  119 (326)
T 3pqe_A           76 IVCICAGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL  119 (326)
T ss_dssp             EEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEecccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            7777665432  2222334479999999999999999887655433

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=97.46  E-value=0.00036  Score=60.44  Aligned_cols=77  Identities=8%  Similarity=-0.052  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------------------ccCCCeEEEEecCCCHHHH
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------------------IQSSSYCFISCDLLNPLDI   86 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------------------~~~~~~~~~~~D~~~~~~l   86 (303)
                      ..+|+||||||+..||.+.+..|.-..|..|+++.|......                   ........+.+|+.+.+.+
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence            347899999999999999998886235778999988654321                   0123567899999999988


Q ss_pred             HHHHhcc-------CceeEEeec
Q 042242           87 KRKLTLL-------EDVTHIFWV  102 (303)
Q Consensus        87 ~~~~~~~-------~~V~~~~~~  102 (303)
                      +++++.+       |.++|.++.
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~  150 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLAS  150 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeccc
Confidence            7777643       446666443

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.40  E-value=0.00015  Score=62.39  Aligned_cols=102  Identities=11%  Similarity=0.045  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCC-------CeEEEEecCCcccc-------c---cCCCe-EEEEecCCCHHHH
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTAN-------WKVYGIARKPEITA-------I---QSSSY-CFISCDLLNPLDI   86 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g-------~~V~~~~r~~~~~~-------~---~~~~~-~~~~~D~~~~~~l   86 (303)
                      +++.-||.|+||+|.||+.++-.|.. ..       .++.+++..+....       +   ..+.. .+...+  +   .
T Consensus        21 s~~~vKVaViGAaG~IG~~la~~la~-~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~--~---~   94 (345)
T 4h7p_A           21 SMSAVKVAVTGAAGQIGYALVPLIAR-GALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA--D---P   94 (345)
T ss_dssp             -CCCEEEEEESTTSHHHHHHHHHHHH-TTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES--C---H
T ss_pred             CCCCCEEEEECcCcHHHHHHHHHHHh-ccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC--C---h
Confidence            33445999999999999999998873 32       26888887653210       1   11111 122221  2   3


Q ss_pred             HHHHhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042242           87 KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA  134 (303)
Q Consensus        87 ~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~  134 (303)
                      .+.++++|.|+.+++.+  .+...+..+.++.|..-+..+.+.+.+.+
T Consensus        95 ~~a~~~advVvi~aG~p--rkpGmtR~DLl~~Na~I~~~~~~~i~~~a  140 (345)
T 4h7p_A           95 RVAFDGVAIAIMCGAFP--RKAGMERKDLLEMNARIFKEQGEAIAAVA  140 (345)
T ss_dssp             HHHTTTCSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhCCCCEEEECCCCC--CCCCCCHHHHHHHhHHHHHHHHHHHHhhc
Confidence            46889999666665543  33333444589999999999999998864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.40  E-value=6.8e-05  Score=59.37  Aligned_cols=59  Identities=14%  Similarity=0.038  Sum_probs=41.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIK   87 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~   87 (303)
                      .+++|+|+||+|.||..+++.+. ..|++|++++|++.+.. ....+... ..|..+.+..+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~-~~G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~   97 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAK-MIGARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFAD   97 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HHTCEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHH
Confidence            46799999999999999999998 57889999999865432 22223332 24766654333

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.31  E-value=0.00024  Score=62.00  Aligned_cols=73  Identities=15%  Similarity=0.075  Sum_probs=55.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-c-cCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-I-QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~-~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+++|+|+|+ |.||+.+++.|. ..|++|++++|++.+.. . ...+.. +.+|..+.+.+.+.++++|.|++++.
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~-~~Ga~V~~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~~~~~~DvVi~~~g  238 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIAL-GMGAQVTILDVNHKRLQYLDDVFGGR-VITLTATEANIKKSVQHADLLIGAVL  238 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTTTS-EEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHhcCce-EEEecCCHHHHHHHHhCCCEEEECCC
Confidence            45689999998 999999999998 68999999999875432 1 101222 45677888889999999997777654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.30  E-value=0.00036  Score=59.55  Aligned_cols=103  Identities=11%  Similarity=0.063  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----cc-----CCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----IQ-----SSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~~-----~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      ..+||.|+|+ |.+|+.++..|+ ..+.  +|.++++.+.+..     +.     ...+.+...|       .+.++++|
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~~~aD   78 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMV-LQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YSDAKDAD   78 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HHHhcCCC
Confidence            4579999995 999999999998 4555  7999998765321     00     1234433322       24688888


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      .|+.+++..  .....+..+.++.|..-...+.+.+.+.++....+
T Consensus        79 iVvi~ag~~--~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~il  122 (326)
T 3vku_A           79 LVVITAGAP--QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL  122 (326)
T ss_dssp             EEEECCCCC------------------CHHHHHHHHHTTTCCSEEE
T ss_pred             EEEECCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            777776543  22233344578999999999999999887665443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.26  E-value=0.00025  Score=63.76  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      .|+|+|+| .|-+|+.|++.|. ..||+|+++++++....  ....++.++.||.++++.|+++ ++.+|
T Consensus         3 ~M~iiI~G-~G~vG~~la~~L~-~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad   70 (461)
T 4g65_A            3 AMKIIILG-AGQVGGTLAENLV-GENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDAD   70 (461)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHTC-STTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCS
T ss_pred             cCEEEEEC-CCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCC
Confidence            46899999 5999999999998 78999999999876643  1234788999999999988776 45555

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.25  E-value=0.00017  Score=63.87  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccCcee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLEDVT   97 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~   97 (303)
                      .++|+|+| .|.+|+.+++.|. ..|++|+++++++.... ....++.++.+|.++.+.++++ ++.++.|+
T Consensus         4 ~~~viIiG-~Gr~G~~va~~L~-~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAG-FGRFGQITGRLLL-SSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHH-HTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEEC-CCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            35799999 5999999999998 68999999999987643 2345788899999999988776 56666433

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.18  E-value=0.00011  Score=62.51  Aligned_cols=102  Identities=10%  Similarity=0.048  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-----cc------CCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-----IQ------SSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-----~~------~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      |++||.|+|| |.+|..++..|+ ..|+ +|+++++++.+..     ..      ....++...  .|   . +.++++|
T Consensus         1 M~~kI~VIGa-G~vG~~~a~~la-~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~aD   72 (309)
T 1ur5_A            1 MRKKISIIGA-GFVGSTTAHWLA-AKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NN---Y-ADTANSD   72 (309)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC---G-GGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-HCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CC---H-HHHCCCC
Confidence            3479999997 999999999998 5675 8999998765431     10      112222211  22   2 3578888


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      .|+..++.+.  .......+....|......+.+.+.+.++...
T Consensus        73 ~Vi~a~g~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~  114 (309)
T 1ur5_A           73 VIVVTSGAPR--KPGMSREDLIKVNADITRACISQAAPLSPNAV  114 (309)
T ss_dssp             EEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTTCE
T ss_pred             EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence            7777765432  22222234678899999999999988765443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.18  E-value=0.0016  Score=55.62  Aligned_cols=107  Identities=15%  Similarity=0.032  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      ++.+||.|+|+ |.+|..++..|+ ..++ +|+++++++.+..     .      ......+...  .|.    +.++++
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~-~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t--~d~----~a~~~a   76 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAG-LKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA--NDY----AAIEGA   76 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SSG----GGGTTC
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHH-hCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe--CCH----HHHCCC
Confidence            44579999997 999999999998 5777 9999999876531     0      0112222211  121    478888


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      |.|+.+++.+  ........+.+..|..-...+++.+.+.++....++.
T Consensus        77 DiVIiaag~p--~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivv  123 (324)
T 3gvi_A           77 DVVIVTAGVP--RKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI  123 (324)
T ss_dssp             SEEEECCSCC--CC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             CEEEEccCcC--CCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEec
Confidence            8666665432  2223334457899999999999999988765544433

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.17  E-value=0.00069  Score=57.51  Aligned_cols=73  Identities=10%  Similarity=0.013  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC---ccccc------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP---EITAI------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~---~~~~~------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ..+++++|+|+ |.+|+.++..|. ..|. +|+++.|++   .+...      ...+..+...++.+.+.+.+.+.++|.
T Consensus       152 l~gk~~lVlGa-GG~g~aia~~L~-~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          152 IIGKKMTICGA-GGAATAICIQAA-LDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             ccCCEEEEECC-ChHHHHHHHHHH-HCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            35789999996 899999999999 6888 799999983   33211      011334555678887888888888887


Q ss_pred             eeEEe
Q 042242           96 VTHIF  100 (303)
Q Consensus        96 V~~~~  100 (303)
                      ||++.
T Consensus       230 IINaT  234 (315)
T 3tnl_A          230 FTNAT  234 (315)
T ss_dssp             EEECS
T ss_pred             EEECc
Confidence            77773

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.17  E-value=0.0019  Score=54.77  Aligned_cols=106  Identities=13%  Similarity=0.048  Sum_probs=68.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc--CCCeEEEEecCCcccc-----ccCC--CeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLIST--ANWKVYGIARKPEITA-----IQSS--SYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r~~~~~~-----~~~~--~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +||.|+||+|.+|..++..|...  ...++.++++.+ ...     +.+.  ...+...--.+   ..+.++++|.|+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~---~~~~~~~aDivii~   76 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGED---ATPALEGADVVLIS   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSC---CHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCC---cHHHhCCCCEEEEe
Confidence            48999999999999999998732  235799999876 211     1111  12222110012   23588899966666


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      ++.+  .....+..+.++.|..-+..+.+.+.+.++....+
T Consensus        77 ag~~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vl  115 (312)
T 3hhp_A           77 AGVA--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIG  115 (312)
T ss_dssp             CSCS--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence            5543  22233344589999999999999999887655433

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.13  E-value=0.0028  Score=53.98  Aligned_cols=105  Identities=12%  Similarity=0.049  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-----ccC------CCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-----IQS------SSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-----~~~------~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      ..+||.|+| +|.+|..++..|+ ..+. +|.++++++.+..     +.+      ....+...  .+    .+.++++|
T Consensus         4 ~~~kI~iiG-aG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d----~~a~~~aD   75 (321)
T 3p7m_A            4 ARKKITLVG-AGNIGGTLAHLAL-IKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--ND----YKDLENSD   75 (321)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC----GGGGTTCS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-hCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CC----HHHHCCCC
Confidence            357999999 5999999999998 5666 8999999876531     111      12233211  12    14788888


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      .|+.+++.+.  .......+.+..|......+++.+.+.++....++
T Consensus        76 vVIi~ag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~viv  120 (321)
T 3p7m_A           76 VVIVTAGVPR--KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC  120 (321)
T ss_dssp             EEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEEEcCCcCC--CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEE
Confidence            7776655432  22223344789999999999999998876544433

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00043  Score=59.87  Aligned_cols=72  Identities=18%  Similarity=0.134  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHh-----ccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLT-----LLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~-----~~~~V~~~~  100 (303)
                      .+++|||+||+|.||..+++.+. ..|++|++++|++.+.. ....+... ..|+.+.+++.+.++     +.|.|++.+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~-~~Ga~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~~  246 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAK-AMGYRVLGIDGGEGKEELFRSIGGEV-FIDFTKEKDIVGAVLKATDGGAHGVINVS  246 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECSTTHHHHHHHTTCCE-EEETTTCSCHHHHHHHHHTSCEEEEEECS
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCcEEEEcCCHHHHHHHHHcCCce-EEecCccHhHHHHHHHHhCCCCCEEEECC
Confidence            46899999999999999999988 67899999999876543 11123332 247764433433333     344455553

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.12  E-value=0.0021  Score=54.60  Aligned_cols=103  Identities=8%  Similarity=0.005  Sum_probs=66.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      +||.|+|+ |.+|+.++..|+ ..+.  +|+++++++.+..     +      ......+...|.      .+.++++|.
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~------~~a~~~aDv   72 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVA-RQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND------YGPTEDSDV   72 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS------SGGGTTCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC------HHHhCCCCE
Confidence            48999996 999999999998 4555  8999999876532     0      111233332221      247888886


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      |+.+++.+.  ....+..+.+..|..-...+.+.+.+.++....++
T Consensus        73 Vii~ag~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~viv  116 (314)
T 3nep_X           73 CIITAGLPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV  116 (314)
T ss_dssp             EEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred             EEECCCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEe
Confidence            666655432  22233345899999999999999998876654433

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.10  E-value=0.00025  Score=61.09  Aligned_cols=68  Identities=16%  Similarity=0.055  Sum_probs=54.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHH-HhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRK-LTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~~   98 (303)
                      .++|+|+|+ |.+|+.+++.|. +.|+ |+++++++........++.++.+|.+|++.++++ +++++.|+.
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~-~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~  183 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELR-GSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV  183 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGG-GSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEE
T ss_pred             cCCEEEECC-cHHHHHHHHHHH-hCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEE
Confidence            468999995 999999999998 6888 9999998865442236789999999999998876 666664433

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.02  E-value=0.0018  Score=55.36  Aligned_cols=108  Identities=12%  Similarity=0.027  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----cc----CC-CeEEEEecCCCHHHHHHHHhc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----IQ----SS-SYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~~----~~-~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      ....++|.|+|+ |.+|..++..|+ ..|.  +|++++++..+..     +.    .. ...++..  .|.    +.+++
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~-~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~----~~~~~   87 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISIL-MKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDY----SVTAN   87 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHH-HTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSG----GGGTT
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHH-hCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCH----HHhCC
Confidence            345679999996 999999999998 4566  7999998764321     10    11 1122212  122    25788


Q ss_pred             cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242           93 LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus        93 ~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      +|.|+.+++...  +...+..+.++.|..-...+.+.+.+.++....++.
T Consensus        88 aDiVvi~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvv  135 (331)
T 4aj2_A           88 SKLVIITAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIV  135 (331)
T ss_dssp             EEEEEECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             CCEEEEccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            886666655432  222223347999999999999999988766544433

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.99  E-value=0.0028  Score=53.87  Aligned_cols=103  Identities=14%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC--cccc-----c------cCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP--EITA-----I------QSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~--~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      .++|.|+|+ |.+|..++..|+ ..|+ +|+++++++  ....     .      ......+...+  +    .+.++++
T Consensus         8 ~~kv~ViGa-G~vG~~ia~~l~-~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d----~~a~~~a   79 (315)
T 3tl2_A            8 RKKVSVIGA-GFTGATTAFLLA-QKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--D----YADTADS   79 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--C----GGGGTTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--C----HHHhCCC
Confidence            469999996 999999999998 5788 899999984  2211     0      00112222111  1    1467888


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      |.|+.+++.+.  ....+..+.+..|..-...+.+.+.+.++....+
T Consensus        80 DvVIiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vl  124 (315)
T 3tl2_A           80 DVVVITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV  124 (315)
T ss_dssp             SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            86666655432  2223334589999999999999999887654433

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.99  E-value=0.0037  Score=54.61  Aligned_cols=68  Identities=15%  Similarity=0.134  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      .++++|+|+| +|.+|+.+++.+. +.|++|++++..+........ -.++..|..|.+.+.++++.+|.|
T Consensus        10 ~~~~~IlIlG-~G~lg~~la~aa~-~lG~~viv~d~~~~~p~~~~a-d~~~~~~~~d~~~l~~~~~~~dvi   77 (377)
T 3orq_A           10 KFGATIGIIG-GGQLGKMMAQSAQ-KMGYKVVVLDPSEDCPCRYVA-HEFIQAKYDDEKALNQLGQKCDVI   77 (377)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESCTTCTTGGGS-SEEEECCTTCHHHHHHHHHHCSEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCChhhhhC-CEEEECCCCCHHHHHHHHHhCCcc
Confidence            3468999999 6999999999998 689999999986543221111 135678999999999999888743

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.94  E-value=0.0039  Score=53.13  Aligned_cols=103  Identities=11%  Similarity=0.029  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----ccC-----CCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----IQS-----SSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~~~-----~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ++||.|+|+ |++|..++..|+ ..+.  +|.+++.++.+..     +.+     ..+++. .  .+    .+.++++|.
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~-~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~----~~a~~~aDv   77 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMA-LRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GD----YSDVKDCDV   77 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHH-HTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CC----HHHhCCCCE
Confidence            368999997 999999999998 5666  8999999865432     111     122222 1  12    345888887


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      |+.++....  .......+....|......+++.+.+.++....+.
T Consensus        78 Vii~~g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv  121 (318)
T 1y6j_A           78 IVVTAGANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV  121 (318)
T ss_dssp             EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             EEEcCCCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEE
Confidence            666655432  22222334789999999999999998766554443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.93  E-value=0.00075  Score=54.14  Aligned_cols=63  Identities=24%  Similarity=0.229  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +.++|.|+| +|.+|+.+++.|. ..|++|++.+|++.+.. ....++...        ++.+.++++|.|+.+
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~-~~g~~V~~~~r~~~~~~~~~~~g~~~~--------~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLV-GSGFKVVVGSRNPKRTARLFPSAAQVT--------FQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHH-HTTCCEEEEESSHHHHHHHSBTTSEEE--------EHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHcCCcee--------cHHHHHhCCCEEEEC
Confidence            346899999 8999999999998 67899999999865432 222244432        245677777755544

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.91  E-value=0.0003  Score=60.42  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .+++|+|+||+|.||..+++.+. ..|++|++++|++.+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~-~~G~~V~~~~~~~~~  182 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEK  182 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            46899999999999999999998 688999999987654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.89  E-value=0.00081  Score=53.65  Aligned_cols=70  Identities=19%  Similarity=0.212  Sum_probs=45.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeE-EEE-ecCCCHHHHHHHHhccCceeEEe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYC-FIS-CDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~-~~~-~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ++|+|+||+|++|+.+++.|+ +.|++|++++|++.+......... .+. .|+. ..++.+.++++|.|+++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLA-TLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeC
Confidence            379999999999999999998 689999999998654321000000 000 1121 124556778888666663

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.89  E-value=0.004  Score=52.33  Aligned_cols=103  Identities=11%  Similarity=-0.006  Sum_probs=69.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      +||.|+|+ |.+|..++..|+ ..++  +|.++++++....     .      ......+...  .|    .+.++++|.
T Consensus         1 MkI~ViGa-G~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~aDi   72 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGSEI   72 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCCCE
Confidence            48999998 999999999998 5666  8999999875431     0      0112222222  12    357888886


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      |+.+++....  ...+..+.+..|..-...+.+.+.+.++..+.++
T Consensus        73 VViaag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iiv  116 (294)
T 1oju_A           73 IVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV  116 (294)
T ss_dssp             EEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEE
T ss_pred             EEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            6666554322  2223344799999999999999998876654443

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.82  E-value=0.0063  Score=51.77  Aligned_cols=104  Identities=12%  Similarity=0.035  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      +++||.|+|| |.+|..++..|+ ..+  .+|.++++++.+..           .....+++. .|  +    .+.++++
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~-~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~~--~----~~a~~~a   75 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLV-NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK-AG--E----YSDCHDA   75 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEE-EC--C----GGGGTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEE-eC--C----HHHhCCC
Confidence            3469999998 999999999998 445  47999998753321           001233333 22  2    3468888


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      |.|+..+......  .....+.+..|..-...+.+.+.+.++.-..++
T Consensus        76 DvVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv  121 (317)
T 3d0o_A           76 DLVVICAGAAQKP--GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV  121 (317)
T ss_dssp             SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            8766665543222  222334789999999999999988866554443

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.78  E-value=0.00031  Score=58.51  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEE-ecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~   63 (303)
                      +++|.|+|++|.+|+.+++.+....++++.++ +|++
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~   41 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG   41 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence            35899999999999999999876688997755 4443

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.77  E-value=0.0058  Score=52.21  Aligned_cols=104  Identities=10%  Similarity=0.031  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----cc-----CCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----IQ-----SSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~~-----~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      +.+||.|+|| |.+|..++..|+ ..+.  +|.++++.+.+..     +.     ..++.+. .|  +    .+.++++|
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~-~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~~--~----~~a~~~aD   78 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMV-LQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY-SA--E----YSDAKDAD   78 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-EC--C----GGGGGGCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-cCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEE-EC--C----HHHhCCCC
Confidence            4479999997 999999999998 3443  7999998754431     10     1233333 22  2    34688999


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      .|+..+....  .......+.+..|......+.+.+.+.++.-..++
T Consensus        79 vVii~ag~~~--k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv  123 (326)
T 2zqz_A           79 LVVITAGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV  123 (326)
T ss_dssp             EEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence            7666655432  22233334789999999999999998876655444

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.77  E-value=0.00065  Score=58.85  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+||+|.||..+++.+. ..|++|++++|++.+.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~-~~Ga~Vi~~~~~~~~~  208 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIAR-AYGLKILGTAGTEEGQ  208 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCChhHH
Confidence            46799999999999999999998 6889999999986553

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.75  E-value=0.0026  Score=52.99  Aligned_cols=66  Identities=17%  Similarity=0.080  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+++|+|+|+ |.+|+.++..|. ..|+ +|++..|++.+......++..+     ..+++.+.++++|.||++
T Consensus       116 ~~k~vlvlGa-Gg~g~aia~~L~-~~G~~~v~v~~R~~~~a~~la~~~~~~-----~~~~~~~~~~~aDiVIna  182 (277)
T 3don_A          116 EDAYILILGA-GGASKGIANELY-KIVRPTLTVANRTMSRFNNWSLNINKI-----NLSHAESHLDEFDIIINT  182 (277)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHH-TTCCSCCEEECSCGGGGTTCCSCCEEE-----CHHHHHHTGGGCSEEEEC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHhcccc-----cHhhHHHHhcCCCEEEEC
Confidence            4689999995 899999999999 6888 7999999987654222233222     344566677888867666

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.72  E-value=0.0068  Score=51.64  Aligned_cols=104  Identities=10%  Similarity=-0.013  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----c----c-CCCeEEE-EecCCCHHHHHHHHhcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----I----Q-SSSYCFI-SCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~----~-~~~~~~~-~~D~~~~~~l~~~~~~~   93 (303)
                      ..+||.|+|+ |.+|..++..|+ ..|+  +|.++++.+.+..     +    . .....+. ..|+      + .++++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la-~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~------~-~~~da   90 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVL-MKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY------S-VSAGS   90 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHH-HHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS------C-SCSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH------H-HhCCC
Confidence            3479999997 999999999998 4565  8999998764321     0    0 1112222 2233      1 27788


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      |.|+..++....+  ..+..+.+..|..-...+.+.+.+.++....++
T Consensus        91 DiVIitaG~p~kp--G~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilv  136 (330)
T 3ldh_A           91 KLVVITAGARQQE--GESRLNLVQRNVNIFKFIIPNIVKHSPDCLKEL  136 (330)
T ss_dssp             SEEEECCSCCCCS--SCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEe
Confidence            8666665543222  222233789999999999999998866554433

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.69  E-value=0.011  Score=49.62  Aligned_cols=102  Identities=12%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-----c------cCCCeEEEEe-cCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-----I------QSSSYCFISC-DLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-----~------~~~~~~~~~~-D~~~~~~l~~~~~~~~~   95 (303)
                      +||.|+|| |.||+.++..|+.+.- -++.+++..+....     +      ......+... |.       +.++++|.
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-------~~~~~aDv   72 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-------SLLKGSEI   72 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-------GGGTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-------HHhCCCCE
Confidence            48999995 9999999999873322 36999998764321     1      1112223222 32       25778886


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      |+..++.+-  +...+..+.++.|..-...+.+.+.+.++.-+.+
T Consensus        73 VvitAG~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivl  115 (294)
T 2x0j_A           73 IVVTAGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKIL  115 (294)
T ss_dssp             EEECCCCCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEE
T ss_pred             EEEecCCCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            666665432  2333344489999999999999999887765433

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.69  E-value=0.00016  Score=54.08  Aligned_cols=66  Identities=17%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      +++|+|+| +|.+|+.+++.|. ..|++|++.+|++.+...  ...+....  ...   ++.+.++++|.|+.+.
T Consensus        21 ~~~v~iiG-~G~iG~~~a~~l~-~~g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~---~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVG-NGMLASEIAPYFS-YPQYKVTVAGRNIDHVRAFAEKYEYEYV--LIN---DIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEEC-CSHHHHHHGGGCC-TTTCEEEEEESCHHHHHHHHHHHTCEEE--ECS---CHHHHHHTCSEEEECS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEEcCCHHHHHHHHHHhCCceE--eec---CHHHHhcCCCEEEEeC
Confidence            68999999 5999999999998 578899999998765321  11122221  223   3556778888655553

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.69  E-value=0.00039  Score=59.56  Aligned_cols=38  Identities=13%  Similarity=0.096  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .+++|+|+||+|.||..+++.+. ..|++|++++|++.+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~-~~G~~V~~~~~~~~~  177 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGTAQK  177 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHH-HHTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            46899999999999999999998 578899999998654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.69  E-value=0.0028  Score=53.52  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      |.++|.|+||.|.+|..++..|. ..|++|++.+|++.
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~-~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLR-ASGYPISILDREDW   56 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHH-TTTCCEEEECTTCG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHH-hCCCeEEEEECCcc
Confidence            45689999999999999999998 68999999998764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.68  E-value=0.0015  Score=54.23  Aligned_cols=37  Identities=19%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEE-EecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYG-IARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~-~~r~~~   64 (303)
                      +.||.|+|++|.+|+.+++.+.+..++++.+ ++|+++
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~   44 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGS   44 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTC
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCc
Confidence            4699999999999999999998678899666 566543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.66  E-value=0.00088  Score=57.79  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|||+||+|.||..+++.+. ..|++|++++|++.+.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~-~~G~~V~~~~~~~~~~  193 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAK-MMGCYVVGSAGSKEKV  193 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHH
Confidence            46799999999999999999887 6789999999986553

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.66  E-value=0.00065  Score=58.28  Aligned_cols=105  Identities=10%  Similarity=-0.027  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc-----------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI-----------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~-----------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      .+||.|+|| |.+|..++..|. ..|+ +|+++++++.....           ......+..     ..++++.++++|.
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la-~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-----t~d~~ea~~~aDi   81 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-----EYSYEAALTGADC   81 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-----ECSHHHHHTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-----eCCHHHHhCCCCE
Confidence            358999997 999999999998 5777 89999998754320           001111111     1234557888886


Q ss_pred             eeEEeecccccCCh---HHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           96 VTHIFWVTWASQFA---SDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        96 V~~~~~~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      |+..+.........   ....+....|..-...+.+.+.+.++....
T Consensus        82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~v  128 (331)
T 1pzg_A           82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI  128 (331)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred             EEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEE
Confidence            66665432211110   012236788888889999998887655433

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.62  E-value=0.00073  Score=60.52  Aligned_cols=37  Identities=19%  Similarity=0.106  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |.++|.|+| .|++|..++..|. +.|++|++++|++.+
T Consensus         1 M~mkI~VIG-~G~vG~~lA~~La-~~G~~V~~~D~~~~~   37 (450)
T 3gg2_A            1 MSLDIAVVG-IGYVGLVSATCFA-ELGANVRCIDTDRNK   37 (450)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHH-hcCCEEEEEECCHHH
Confidence            346999999 6999999999998 689999999998765

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.61  E-value=0.00058  Score=58.64  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .+++|+|+||+|.||..+++.+. ..|++|++++|++.+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~-~~G~~Vi~~~~~~~~  182 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWAR-HLGATVIGTVSTEEK  182 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            46799999999999999999998 678999999998654

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.60  E-value=0.004  Score=55.23  Aligned_cols=68  Identities=13%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ++++|+|+| +|.+|+.+++.+. +.|++|++++..+........+ ..+..|..|.+.+.++++.+|.|+
T Consensus        34 ~~~~IlIlG-~G~lg~~~~~aa~-~lG~~v~v~d~~~~~p~~~~ad-~~~~~~~~d~~~l~~~a~~~D~V~  101 (419)
T 4e4t_A           34 PGAWLGMVG-GGQLGRMFCFAAQ-SMGYRVAVLDPDPASPAGAVAD-RHLRAAYDDEAALAELAGLCEAVS  101 (419)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCTTCHHHHHSS-EEECCCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEECCCCcCchhhhCC-EEEECCcCCHHHHHHHHhcCCEEE
Confidence            467999999 6999999999998 6899999998765432211111 355689999999999988887443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.58  E-value=0.0011  Score=56.99  Aligned_cols=56  Identities=23%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-c-cCCCeEEEEecCCCHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-I-QSSSYCFISCDLLNPL   84 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~-~~~~~~~~~~D~~~~~   84 (303)
                      .+++|||+||+|.||..+++.+. ..|++|++++|++.+.. . ...+... ..|..+.+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~  206 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIAR-LKGCRVVGIAGGAEKCRFLVEELGFDG-AIDYKNED  206 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHTTCCSE-EEETTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHcCCCE-EEECCCHH
Confidence            46799999999999999999887 68999999999876543 2 2334432 24655543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.57  E-value=0.0021  Score=54.26  Aligned_cols=72  Identities=13%  Similarity=0.059  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .+.+|+|+|++|.+|..+++.+. ..|.+|++++|++.+.. ....+...+ .|..+.+.+.+.+.++|.|++ ++
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~-~~Ga~Vi~~~~~~~~~~~~~~~ga~~~-~~~~~~~~~~~~~~~~d~vid-~g  197 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVAR-AMGLRVLAAASRPEKLALPLALGAEEA-ATYAEVPERAKAWGGLDLVLE-VR  197 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEESSGGGSHHHHHTTCSEE-EEGGGHHHHHHHTTSEEEEEE-CS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHhcCCCEE-EECCcchhHHHHhcCceEEEE-CC
Confidence            46799999999999999999887 67889999999776543 112233322 455541334444466676666 54

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.55  E-value=0.0099  Score=52.09  Aligned_cols=67  Identities=15%  Similarity=0.134  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ++++|+|+| +|.+|+.+++.+. ..|++|++++..+........+ ..+..|..|.+.+.+.++.+|.|
T Consensus        13 ~~k~IlIlG-~G~~g~~la~aa~-~~G~~vi~~d~~~~~~~~~~ad-~~~~~~~~d~~~l~~~~~~~dvI   79 (389)
T 3q2o_A           13 PGKTIGIIG-GGQLGRMMALAAK-EMGYKIAVLDPTKNSPCAQVAD-IEIVASYDDLKAIQHLAEISDVV   79 (389)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSTTCTTTTTCS-EEEECCTTCHHHHHHHHHTCSEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEeCCCCCchHHhCC-ceEecCcCCHHHHHHHHHhCCEe
Confidence            568999999 6899999999998 7899999998765432211112 24568999999999999887743

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.53  E-value=0.0029  Score=54.37  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhh--cCCCeEEEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLIS--TANWKVYGIA   60 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~--~~g~~V~~~~   60 (303)
                      |+++|.|.||||++|+.+++.|++  ....+++++.
T Consensus         5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~   40 (340)
T 2hjs_A            5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA   40 (340)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            346899999999999999999982  2445666665

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=96.51  E-value=0.0064  Score=53.59  Aligned_cols=65  Identities=12%  Similarity=0.103  Sum_probs=50.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      +++|+|+| +|.+|+.+++.+. +.|++|++++ .+.... ........+.+|..|.+.+.++++.+|.
T Consensus        24 ~~~I~ilG-gG~lg~~l~~aa~-~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~   89 (403)
T 3k5i_A           24 SRKVGVLG-GGQLGRMLVESAN-RLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDV   89 (403)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCE
Confidence            67999999 5899999999998 6899999999 543322 1122224567899999999999988874

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.50  E-value=0.0065  Score=51.72  Aligned_cols=103  Identities=10%  Similarity=0.018  Sum_probs=65.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----c-----cCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----I-----QSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~-----~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +||.|+|| |.+|..++..|+ ..+.  +|.++++.+.+..     +     ....+++.. |  +    .+.++++|.|
T Consensus         6 ~KI~IiGa-G~vG~~~a~~l~-~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDvV   76 (318)
T 1ez4_A            6 QKVVLVGD-GAVGSSYAFAMA-QQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDADLV   76 (318)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-cCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCEE
Confidence            69999997 999999999998 3454  7999998754321     0     012333332 2  2    3468888876


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSL  142 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~  142 (303)
                      +..+....  .......+.+..|......+.+.+.+.++.-..++.
T Consensus        77 ii~ag~~~--~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  120 (318)
T 1ez4_A           77 VITAGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA  120 (318)
T ss_dssp             EECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            66654432  222333347889999999999999988766554443

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.50  E-value=0.0008  Score=58.34  Aligned_cols=39  Identities=15%  Similarity=-0.051  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+||+|.||..+++.+. ..|++|++++|++.+.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~-~~Ga~Vi~~~~~~~~~  200 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTR-MAGAIPLVTAGSQKKL  200 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHH-HcCCEEEEEeCCHHHH
Confidence            46799999999999999999998 6889999999986553

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.50  E-value=0.005  Score=52.16  Aligned_cols=72  Identities=13%  Similarity=0.147  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCc---cccc------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPE---ITAI------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~---~~~~------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ..+++++|+|+ |.+|+.++..|. ..|. +|+++.|+++   +...      ...+..+...++.+.+.+.+.+.++|.
T Consensus       146 l~gk~~lVlGA-GGaaraia~~L~-~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di  223 (312)
T 3t4e_A          146 MRGKTMVLLGA-GGAATAIGAQAA-IEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI  223 (312)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHH-HTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHH-HcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence            35789999996 899999999999 5787 6999999833   2211      011233445677775555677888887


Q ss_pred             eeEE
Q 042242           96 VTHI   99 (303)
Q Consensus        96 V~~~   99 (303)
                      ||++
T Consensus       224 IINa  227 (312)
T 3t4e_A          224 LTNG  227 (312)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7776

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.50  E-value=0.0074  Score=51.33  Aligned_cols=103  Identities=10%  Similarity=0.039  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      +.+||.|+|+ |.+|..++..|+ ..+  .+|+++++++....     .      ....+++.. |  +    .+.++++
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~-~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~a   75 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALM-NQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDA   75 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHH-HHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHH-hCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCC
Confidence            3469999997 999999999997 344  37999999864321     0      001333332 1  2    2457888


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      |.|+.++........  ...+.+..|......+++.+.+.++.-..+
T Consensus        76 DvViia~~~~~~~g~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~~i  120 (316)
T 1ldn_A           76 DLVVICAGANQKPGE--TRLDLVDKNIAIFRSIVESVMASGFQGLFL  120 (316)
T ss_dssp             SEEEECCSCCCCTTT--CSGGGHHHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred             CEEEEcCCCCCCCCC--CHHHHHHcChHHHHHHHHHHHHHCCCCEEE
Confidence            866666543322211  122367888888888999888876554433

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.47  E-value=0.0012  Score=57.36  Aligned_cols=71  Identities=20%  Similarity=0.123  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccccc----CCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQ----SSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      ..++|+|+|+ |-+|+.+++.|. ..|.+|++++|++.+....    ...+.   ....+.+.+.+.++++|.|+++...
T Consensus       166 ~~~~VlViGa-GgvG~~aa~~a~-~~Ga~V~v~dr~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~DvVI~~~~~  240 (361)
T 1pjc_A          166 KPGKVVILGG-GVVGTEAAKMAV-GLGAQVQIFDINVERLSYLETLFGSRVE---LLYSNSAEIETAVAEADLLIGAVLV  240 (361)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGSE---EEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHhhCceeE---eeeCCHHHHHHHHcCCCEEEECCCc
Confidence            4589999997 999999999998 6788999999987653210    01121   1223456677788888878777543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.45  E-value=0.016  Score=49.25  Aligned_cols=101  Identities=10%  Similarity=0.016  Sum_probs=61.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc---cc-C------CCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA---IQ-S------SSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~---~~-~------~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      +.++|.|+|+ |.+|..++..|. ..|+  +|++++|++....   .. .      ....+...  .+.    +.++++|
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~-~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~aD   77 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDAD   77 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhCCCC
Confidence            3469999996 999999999998 6788  9999999864321   10 0      12222221  122    2466777


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      .|+.++......  .....+....|......+++.+.+.++.-
T Consensus        78 ~Vii~v~~~~~~--g~~r~~~~~~n~~~~~~~~~~i~~~~~~~  118 (319)
T 1lld_A           78 MVVITAGPRQKP--GQSRLELVGATVNILKAIMPNLVKVAPNA  118 (319)
T ss_dssp             EEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            555544322111  12223478888888888888887654433

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.45  E-value=0.004  Score=52.06  Aligned_cols=69  Identities=17%  Similarity=0.174  Sum_probs=48.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc-------cCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI-------QSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ..+++++|+|+ |.+|+.++..|. ..|. +|++++|+..+...       ..+.+.+...++.   ++.+.++++|.|+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~-~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~---~l~~~l~~~DiVI  199 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALV-THGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDAR---GIEDVIAAADGVV  199 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECST---THHHHHHHSSEEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHH---HHHHHHhcCCEEE
Confidence            35789999996 899999999999 5788 69999998765421       0122334344443   3556778888777


Q ss_pred             EE
Q 042242           98 HI   99 (303)
Q Consensus        98 ~~   99 (303)
                      ++
T Consensus       200 na  201 (283)
T 3jyo_A          200 NA  201 (283)
T ss_dssp             EC
T ss_pred             EC
Confidence            76

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.41  E-value=0.0013  Score=57.11  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~   65 (303)
                      ++|+|+||+|.||..+++.+. ..|+ +|++++|++.+
T Consensus       162 ~~vlI~GasggiG~~~~~~a~-~~Ga~~Vi~~~~~~~~  198 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGH-FLGCSRVVGICGTHEK  198 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHH-HTTCSEEEEEESCHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHH-HCCCCeEEEEeCCHHH
Confidence            899999999999999999988 6899 99999998654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.41  E-value=0.01  Score=50.12  Aligned_cols=99  Identities=14%  Similarity=0.048  Sum_probs=61.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----ccC-----CCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----IQS-----SSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~~~-----~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +||.|+|+ |.+|..++..|. ..|+  +|+++++++.+..     ...     ....+..   .+.    +.++++|.|
T Consensus         1 mkI~VIGa-G~vG~~la~~la-~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~----~a~~~aDvV   71 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALV-LRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GGH----SELADAQVV   71 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---ECG----GGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CCH----HHhCCCCEE
Confidence            48999997 999999999998 6788  8999999865321     111     1222222   122    357888866


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      +.++....  .......+.+..|......+++.+.+.++.-.
T Consensus        72 Ii~~~~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~  111 (304)
T 2v6b_A           72 ILTAGANQ--KPGESRLDLLEKNADIFRELVPQITRAAPDAV  111 (304)
T ss_dssp             EECC--------------CHHHHHHHHHHHHHHHHHHCSSSE
T ss_pred             EEcCCCCC--CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeE
Confidence            66543322  11222334678899999999998888755443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.40  E-value=0.0013  Score=55.82  Aligned_cols=101  Identities=12%  Similarity=-0.010  Sum_probs=63.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCccccc-----cC------CCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITAI-----QS------SSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~-----~~------~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ++|.|+|+ |.+|..++..|... .+++|+++++++.....     ..      ....+...  .|.   .+ ++++|.|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~aDvV   73 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY---AD-TANSDIV   73 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG---GG-GTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CCH---HH-HCCCCEE
Confidence            47999997 99999999999843 37899999998754321     01      11111111  222   23 7778855


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      +.++....  .......+.+..|......+.+.+.+.++.-.
T Consensus        74 iiav~~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~  113 (310)
T 1guz_A           74 IITAGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI  113 (310)
T ss_dssp             EECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             EEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            55543321  11111234788999999999998887755443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.37  E-value=0.002  Score=54.37  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=29.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ..|++||-++| -|.+|..+++.|+ +.||+|++.+|++.+.
T Consensus         2 ~~Ms~kIgfIG-LG~MG~~mA~~L~-~~G~~V~v~dr~~~~~   41 (297)
T 4gbj_A            2 NAMSEKIAFLG-LGNLGTPIAEILL-EAGYELVVWNRTASKA   41 (297)
T ss_dssp             --CCCEEEEEC-CSTTHHHHHHHHH-HTTCEEEEC-------
T ss_pred             CCCCCcEEEEe-cHHHHHHHHHHHH-HCCCeEEEEeCCHHHH
Confidence            35778999999 8999999999999 6899999999987764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.32  E-value=0.015  Score=49.70  Aligned_cols=101  Identities=15%  Similarity=0.042  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc-----c------CCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI-----Q------SSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~-----~------~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      |.++|.|+|| |.+|..++..|. ..|+ +|++.++++.....     .      ....++...  .|   + +.++++|
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la-~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~al~~aD   84 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLG-QKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE--NN---Y-EYLQNSD   84 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SC---G-GGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC--CC---H-HHHCCCC
Confidence            4479999997 999999999998 5788 89999998754320     0      011112111  22   2 3678888


Q ss_pred             ceeEEeeccc-ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           95 DVTHIFWVTW-ASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        95 ~V~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      .|+..+..+. ......   +....|..-...+.+.+.+.++...
T Consensus        85 ~VI~avg~p~k~g~tr~---dl~~~n~~i~~~i~~~i~~~~p~a~  126 (328)
T 2hjr_A           85 VVIITAGVPRKPNMTRS---DLLTVNAKIVGSVAENVGKYCPNAF  126 (328)
T ss_dssp             EEEECCSCCCCTTCCSG---GGHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred             EEEEcCCCCCCCCCchh---hHHhhhHHHHHHHHHHHHHHCCCeE
Confidence            6555543322 111112   2567788888888888887765543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.30  E-value=0.0021  Score=56.15  Aligned_cols=73  Identities=11%  Similarity=0.029  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccC-CCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQS-SSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~-~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+++|+|+|+ |-||+.+++.+. ..|.+|++.+|++.+.. ... .+..+ ..+..+.+.+.+.++++|.|+.++.
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~-~~Ga~V~~~d~~~~~l~~~~~~~g~~~-~~~~~~~~~l~~~l~~aDvVi~~~~  240 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIAN-GMGATVTVLDINIDKLRQLDAEFCGRI-HTRYSSAYELEGAVKRADLVIGAVL  240 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTTTSS-EEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHhcCCee-EeccCCHHHHHHHHcCCCEEEECCC
Confidence            45789999997 999999999998 68889999999876532 110 11111 2334456678888888887776644

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.30  E-value=0.004  Score=53.86  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR   61 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   61 (303)
                      |+.+|.|.||+|++|+.+++.|.....++|+++.+
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~   41 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAA   41 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            55699999999999999999998555678888875

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.29  E-value=0.019  Score=48.66  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----cc-----CCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----IQ-----SSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~~-----~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +||.|+|| |.+|..++..|+. .+  .+|.++++++.+..     +.     ..++.+.. +  +    .+.++++|.|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~-~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD~V   71 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALAL-LGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGARAV   71 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCCEE
Confidence            48999997 9999999999983 44  47999998764331     11     12333332 2  2    2458888866


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      +..+......  .....+....|......+.+.+.+.++.-..++
T Consensus        72 ii~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv  114 (310)
T 2xxj_A           72 VLAAGVAQRP--GETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV  114 (310)
T ss_dssp             EECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EECCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEE
Confidence            6665543222  222334789999999999999998876654444

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.28  E-value=0.0036  Score=53.99  Aligned_cols=35  Identities=17%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC-----CCeEEEEecC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA-----NWKVYGIARK   62 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~-----g~~V~~~~r~   62 (303)
                      +++|.|.||||++|+.|++.|++..     .++|+.+.++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~   48 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAA   48 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECC
Confidence            3699999999999999999998433     4578887653

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=96.27  E-value=0.013  Score=49.42  Aligned_cols=63  Identities=14%  Similarity=0.078  Sum_probs=43.7

Q ss_pred             CCCE-EEEEcC-C-----------------ChhHHHHHHHHhhcCCCeEEEEecCCccccc------------------c
Q 042242           27 AKNV-AVIFGV-T-----------------GLVGKELARRLISTANWKVYGIARKPEITAI------------------Q   69 (303)
Q Consensus        27 ~~~~-vlVtGa-t-----------------G~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------------------~   69 (303)
                      .+++ ||||+| |                 |-.|.+++++++ ..|++|+.+.|..+-.++                  .
T Consensus        35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~-~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~  113 (313)
T 1p9o_A           35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFL-AAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPA  113 (313)
T ss_dssp             TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHH-HTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-
T ss_pred             cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHH-HCCCEEEEEecCCCcCcchhccCccchhhhhcccccc
Confidence            4566 888854 5                 889999999999 699999999996542221                  0


Q ss_pred             CCCeEEEEecCCCHHHHHHHH
Q 042242           70 SSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        70 ~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      ..++..+.+|+...+.+.+++
T Consensus       114 ~~~~~~i~v~v~sa~~m~~av  134 (313)
T 1p9o_A          114 LSGLLSLEAEENALPGFAEAL  134 (313)
T ss_dssp             CCSEEEEEEETTTSTTHHHHH
T ss_pred             ccccceeeeccccHHHHHHHH
Confidence            124446677777666555544

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.27  E-value=0.016  Score=50.11  Aligned_cols=65  Identities=18%  Similarity=0.177  Sum_probs=45.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecC-CCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDL-LNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~-~~~~~l~~~~~~~~~   95 (303)
                      +|||+|+| +|..|..++..+. +.||+|++++.++........+ +++..|. .|.+.+....+.+|.
T Consensus         1 MK~I~ilG-gg~~g~~~~~~Ak-~~G~~vv~vd~~~~~~~~~~aD-~~~~~~~~~d~~~~~~~~~~~D~   66 (363)
T 4ffl_A            1 MKTICLVG-GKLQGFEAAYLSK-KAGMKVVLVDKNPQALIRNYAD-EFYCFDVIKEPEKLLELSKRVDA   66 (363)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESCTTCTTTTTSS-EEEECCTTTCHHHHHHHHTSSSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCCCChhHhhCC-EEEECCCCcCHHHHHHHhcCCCE
Confidence            37999999 6899999999887 7899999999876543211111 2444554 466666666677764

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.25  E-value=0.0023  Score=55.09  Aligned_cols=39  Identities=8%  Similarity=-0.037  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|||+|++|.||..+++.+. ..|++|++++|++.+.
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~-~~G~~Vi~~~~~~~~~  204 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAK-LFGARVIATAGSEDKL  204 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHH
Confidence            46799999999999999999987 6789999999976553

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.22  E-value=0.0038  Score=52.29  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |.++|.|+|+||.+|+.+++.|. ..|++|++.+|++.+
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~-~~g~~V~~~~r~~~~   47 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIH-DSAHHLAAIEIAPEG   47 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHH-HSSSEEEEECCSHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEECCHHH
Confidence            34699999988999999999998 688999999998654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.22  E-value=0.0013  Score=55.41  Aligned_cols=71  Identities=10%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc---c-CCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI---Q-SSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~---~-~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ..+++|+|+|+ |.+|+.++..|+ ..|+ +|++..|++.+...   . .....    +..+.+++.+.+.++|.|+++.
T Consensus       139 l~~~~vlVlGa-Gg~g~aia~~L~-~~G~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~~~~~~~~~~~aDivIn~t  212 (297)
T 2egg_A          139 LDGKRILVIGA-GGGARGIYFSLL-STAAERIDMANRTVEKAERLVREGDERRS----AYFSLAEAETRLAEYDIIINTT  212 (297)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHH-TTTCSEEEEECSSHHHHHHHHHHSCSSSC----CEECHHHHHHTGGGCSEEEECS
T ss_pred             CCCCEEEEECc-HHHHHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHhhhccC----ceeeHHHHHhhhccCCEEEECC
Confidence            35689999996 889999999999 6787 89999998765321   0 01000    1123345667788888777774


Q ss_pred             ec
Q 042242          101 WV  102 (303)
Q Consensus       101 ~~  102 (303)
                      ..
T Consensus       213 ~~  214 (297)
T 2egg_A          213 SV  214 (297)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.20  E-value=0.0066  Score=51.72  Aligned_cols=98  Identities=14%  Similarity=0.013  Sum_probs=62.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccccc----------CCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITAIQ----------SSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~----------~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ++|.|+|+ |.+|..++..|+ ..|+  +|++++|++......          .....+. .  .+.    +.++++|.|
T Consensus         1 mkI~VIGa-G~~G~~la~~l~-~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~-~--~d~----~~~~~aDvV   71 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALL-MKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY-A--GDY----ADLKGSDVV   71 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE-E--CCG----GGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE-e--CCH----HHhCCCCEE
Confidence            47999997 999999999998 5788  899999986432200          0112222 1  232    246778855


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      +.++.......  ....+....|......+++.+.+.++.-
T Consensus        72 iiav~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~~~~  110 (319)
T 1a5z_A           72 IVAAGVPQKPG--ETRLQLLGRNARVMKEIARNVSKYAPDS  110 (319)
T ss_dssp             EECCCCCCCSS--CCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEccCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            55543322111  1122367888888889999888765443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.19  E-value=0.014  Score=49.47  Aligned_cols=61  Identities=13%  Similarity=0.113  Sum_probs=46.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ...+++|.|.| .|.||+.+++.|. ..|++|++.+|++...    .++....    ...++.++++.+|.
T Consensus       136 ~l~g~tvGIiG-~G~IG~~vA~~l~-~~G~~V~~~dr~~~~~----~~~~~~~----~~~~l~ell~~aDi  196 (315)
T 3pp8_A          136 TREEFSVGIMG-AGVLGAKVAESLQ-AWGFPLRCWSRSRKSW----PGVESYV----GREELRAFLNQTRV  196 (315)
T ss_dssp             CSTTCCEEEEC-CSHHHHHHHHHHH-TTTCCEEEEESSCCCC----TTCEEEE----SHHHHHHHHHTCSE
T ss_pred             CcCCCEEEEEe-eCHHHHHHHHHHH-HCCCEEEEEcCCchhh----hhhhhhc----ccCCHHHHHhhCCE
Confidence            44678999999 7999999999998 7899999999987542    2232221    23678889999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.14  E-value=0.0096  Score=50.38  Aligned_cols=76  Identities=12%  Similarity=-0.028  Sum_probs=50.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccC----CCeE-EEEecCCCHHHHHHHHhccCceeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQS----SSYC-FISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~----~~~~-~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ...+++|+|+|++..+|+.+++.|+ ..|..|++++|+........    ...+ .......+.+.+.+.++.+|.||..
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~-~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsA  252 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLA-NDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG  252 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHH-TTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHH-HCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEEC
Confidence            3467899999988889999999998 67889999988754432111    1111 1111113447789999999966655


Q ss_pred             ee
Q 042242          100 FW  101 (303)
Q Consensus       100 ~~  101 (303)
                      ..
T Consensus       253 tg  254 (320)
T 1edz_A          253 VP  254 (320)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.12  E-value=0.0061  Score=51.68  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=32.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +++|.|+| .|.+|..+++.|. ..|++|++.+|++.+.
T Consensus        21 m~~I~iIG-~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~   57 (310)
T 3doj_A           21 MMEVGFLG-LGIMGKAMSMNLL-KNGFKVTVWNRTLSKC   57 (310)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSGGGG
T ss_pred             CCEEEEEC-ccHHHHHHHHHHH-HCCCeEEEEeCCHHHH
Confidence            46899999 7999999999999 6899999999987654

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.11  E-value=0.077  Score=45.93  Aligned_cols=105  Identities=11%  Similarity=-0.003  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-----eEEEEecCCccc---------cccC---CCeEEEEecCCCHHHHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-----KVYGIARKPEIT---------AIQS---SSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~~~r~~~~~---------~~~~---~~~~~~~~D~~~~~~l~~~~   90 (303)
                      ..||.|+||+|.||.+++-.|+ ..+.     .|.+.+...+..         .+.+   +-...+.+  .+  .-.+.+
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~-~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i--~~--~~y~~~  106 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLA-SGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--GI--DPYEVF  106 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHH-HTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--ES--CHHHHT
T ss_pred             CCEEEEECCCChHHHHHHHHHH-cCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE--ec--CCHHHh
Confidence            4689999999999999999998 3332     265554433221         0111   11111111  11  134688


Q ss_pred             hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccE
Q 042242           91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKH  139 (303)
Q Consensus        91 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~  139 (303)
                      +++|.|+..++.  +.+...+..+.++.|..-+..+...+.+. ++..+.
T Consensus       107 ~daDvVVitag~--prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~iv  154 (375)
T 7mdh_A          107 EDVDWALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKV  154 (375)
T ss_dssp             TTCSEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred             CCCCEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            899866655543  23333344458999999999999999875 555433

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.10  E-value=0.015  Score=49.39  Aligned_cols=100  Identities=11%  Similarity=0.024  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccccc-----------CCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQ-----------SSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~-----------~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      .++|.|+|+ |.+|..++..|+ ..|+ +|+++++++......           .....+...  .|   + +.++++|.
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la-~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~a~~~aDi   75 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVG-KDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT--DD---Y-ADISGSDV   75 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SC---G-GGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCCCE
Confidence            368999996 999999999998 5687 899999987543210           001111111  12   2 35677885


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      |+.++..........  .+....|......+++.+.+.++.-
T Consensus        76 Vi~avg~p~~~g~~r--~d~~~~~~~i~~~i~~~i~~~~~~~  115 (317)
T 2ewd_A           76 VIITASIPGRPKDDR--SELLFGNARILDSVAEGVKKYCPNA  115 (317)
T ss_dssp             EEECCCCSSCCSSCG--GGGHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             EEEeCCCCCCCCCcH--HHHHHhhHHHHHHHHHHHHHHCCCc
Confidence            555544322211111  1256677777778888887765543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.09  E-value=0.0018  Score=56.02  Aligned_cols=39  Identities=18%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+||+|.||..+++.+. ..|.+|++++|++.+.
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~  205 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLAR-AFGAEVYATAGSTGKC  205 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHH
Confidence            46799999999999999999988 6899999999987654

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=96.05  E-value=0.023  Score=49.45  Aligned_cols=66  Identities=18%  Similarity=0.144  Sum_probs=48.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      |+|+|+|+ |..|+.+++.|. +.|++|++++..+........+ .++.+|..|.+.+.+.+..+|.|+
T Consensus         2 ~~Ililg~-g~~g~~~~~a~~-~~G~~v~~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~~d~v~   67 (380)
T 3ax6_A            2 KKIGIIGG-GQLGKMMTLEAK-KMGFYVIVLDPTPRSPAGQVAD-EQIVAGFFDSERIEDLVKGSDVTT   67 (380)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESSTTCTTGGGSS-EEEECCTTCHHHHHHHHHTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEEEeCCCCCchhhhCc-eEEECCCCCHHHHHHHHhcCCEEE
Confidence            68999995 899999999998 6899999998765432111111 356689999999888887777433

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.05  E-value=0.0024  Score=54.75  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+||+|.||..+++.+. ..|.+|+++++++.+.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~  186 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLK-MKGAHTIAVASTDEKL  186 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHH
Confidence            46799999999999999999887 6889999999976553

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.00  E-value=0.0022  Score=54.74  Aligned_cols=103  Identities=15%  Similarity=0.038  Sum_probs=63.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-----cc------CCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-----IQ------SSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-----~~------~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +||.|+|| |.+|..++..|. ..|+ +|+++++++.+..     ..      ....++...  .|   . +.++++|.|
T Consensus         5 ~kI~VIGa-G~vG~~ia~~la-~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~al~~aD~V   76 (322)
T 1t2d_A            5 AKIVLVGS-GMIGGVMATLIV-QKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NT---Y-DDLAGADVV   76 (322)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CC---G-GGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCCCEE
Confidence            58999997 999999999998 5777 8999998875432     00      112222211  22   2 467888866


Q ss_pred             eEEeecccccCCh---HHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           97 THIFWVTWASQFA---SDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        97 ~~~~~~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      +..+..+......   ....+....|..-...+.+.+.+.++....
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~i  122 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFI  122 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence            6665432211110   001235778888888888888877655433

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.99  E-value=0.0066  Score=50.80  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.|+| .|.+|+.+++.|. ..|++|++.+|++.+.
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~-~~G~~V~~~dr~~~~~   37 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLV-KAGCSVTIWNRSPEKA   37 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSGGGG
T ss_pred             CEEEEEe-ecHHHHHHHHHHH-HCCCeEEEEcCCHHHH
Confidence            6899999 6999999999999 6899999999987654

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.99  E-value=0.0072  Score=52.33  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      ..+|.|.||+|++|+.+++.|.+...++|+++.++.
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~   51 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR   51 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch
Confidence            358999999999999999999855567888887653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.94  E-value=0.0018  Score=55.36  Aligned_cols=39  Identities=18%  Similarity=0.240  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+||+|.||..+++.+. ..|.+|+++++++.+.
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~  178 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAK-ALGAKLIGTVSSPEKA  178 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEESSHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHH
Confidence            46799999999999999999887 5788999999876653

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.93  E-value=0.0076  Score=51.91  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      +++|.|.||||++|+.+++.|.....++++++.++.
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~   39 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRR   39 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCST
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECch
Confidence            368999999999999999999855567888877643

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.89  E-value=0.018  Score=47.64  Aligned_cols=56  Identities=21%  Similarity=0.143  Sum_probs=43.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ...+++++|+|+++.+|+.++..|+ ..|..|+++.|+..                    .+.+.++.+|.|+...+
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~-~~gAtVtv~h~~t~--------------------~L~~~~~~ADIVI~Avg  212 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLL-NAGATVSVCHIKTK--------------------DLSLYTRQADLIIVAAG  212 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHH-HTTCEEEEECTTCS--------------------CHHHHHTTCSEEEECSS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEeCCch--------------------hHHHHhhcCCEEEECCC
Confidence            3467999999999999999999998 67889998876531                    25678888886555543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.89  E-value=0.0048  Score=51.90  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |.++|.|+| .|.+|+.++..|. ..|++|++.+|++.+
T Consensus         4 M~m~i~iiG-~G~~G~~~a~~l~-~~g~~V~~~~~~~~~   40 (299)
T 1vpd_A            4 MTMKVGFIG-LGIMGKPMSKNLL-KAGYSLVVSDRNPEA   40 (299)
T ss_dssp             --CEEEEEC-CSTTHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             ccceEEEEC-chHHHHHHHHHHH-hCCCEEEEEeCCHHH
Confidence            446999999 7999999999998 578999999998654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.88  E-value=0.0072  Score=51.49  Aligned_cols=38  Identities=29%  Similarity=0.410  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +.++|.|+| .|.+|..+++.|. ..|++|++.+|++.+.
T Consensus        30 ~~~~I~iIG-~G~mG~~~a~~l~-~~G~~V~~~dr~~~~~   67 (320)
T 4dll_A           30 YARKITFLG-TGSMGLPMARRLC-EAGYALQVWNRTPARA   67 (320)
T ss_dssp             CCSEEEEEC-CTTTHHHHHHHHH-HTTCEEEEECSCHHHH
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHH-hCCCeEEEEcCCHHHH
Confidence            346999999 6999999999999 6899999999987653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.88  E-value=0.0066  Score=51.13  Aligned_cols=37  Identities=19%  Similarity=0.075  Sum_probs=33.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .++|.|+| .|.+|..+++.|. ..||+|++.+|++.+.
T Consensus        15 ~~~I~vIG-~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~   51 (296)
T 3qha_A           15 QLKLGYIG-LGNMGAPMATRMT-EWPGGVTVYDIRIEAM   51 (296)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHT-TSTTCEEEECSSTTTS
T ss_pred             CCeEEEEC-cCHHHHHHHHHHH-HCCCeEEEEeCCHHHH
Confidence            46899999 7999999999998 6899999999988764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.86  E-value=0.012  Score=51.00  Aligned_cols=72  Identities=13%  Similarity=-0.005  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-c-CCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-Q-SSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~-~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .+.+|+|+|+ |.||..+++.+. ..|.+|+++++++.+... . ..+... ..|..+.+.+.+...++|.|+.+++
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~-~~Ga~Vi~~~~~~~~~~~~~~~lGa~~-v~~~~~~~~~~~~~~~~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAK-AFGSKVTVISTSPSKKEEALKNFGADS-FLVSRDQEQMQAAAGTLDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCGGGHHHHHHTSCCSE-EEETTCHHHHHHTTTCEEEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhcCCce-EEeccCHHHHHHhhCCCCEEEECCC
Confidence            4579999995 999999999887 678899999988765431 1 334432 2577776666666556666666644

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.84  E-value=0.011  Score=48.29  Aligned_cols=63  Identities=13%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      ++|.|+|++|.+|+.+++.+.+..+++|.++..+..... ....+.. +.+|.+.++...+.+..
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~D-vvIDfT~p~a~~~~~~~   64 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTE-VVIDFTHPDVVMGNLEF   64 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCC-EEEECSCTTTHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCc-EEEEccChHHHHHHHHH
Confidence            379999999999999999997556899776655433221 1111333 55788888877665543

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=95.84  E-value=0.051  Score=47.43  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      +.++|+|+|+ |.+|+.+++.+. ..|++|++++..+........ -.++.+|..|.+.+.+.++.
T Consensus        10 ~~~~ili~g~-g~~~~~~~~a~~-~~G~~v~~~~~~~~~~~~~~~-d~~~~~~~~d~~~l~~~~~~   72 (391)
T 1kjq_A           10 AATRVMLLGS-GELGKEVAIECQ-RLGVEVIAVDRYADAPAMHVA-HRSHVINMLDGDALRRVVEL   72 (391)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHH-TTTCEEEEEESSTTCGGGGGS-SEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEECCCCCchhhhc-cceEECCCCCHHHHHHHHHH
Confidence            4579999985 899999999998 689999999886543221111 13556788898888887763

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.80  E-value=0.0035  Score=53.90  Aligned_cols=39  Identities=15%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+||+|.||..+++.+. ..|.+|+++++++.+.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~  182 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQ-ILNFRLIAVTRNNKHT  182 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEESSSTTH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCHHHH
Confidence            46799999999999999998887 6788999999987654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.79  E-value=0.017  Score=49.26  Aligned_cols=63  Identities=16%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++....    .+...    ....++.++++.+|.|+
T Consensus       134 ~l~gktvGIiG-lG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~----~~~~~----~~~~~l~ell~~aDvV~  196 (324)
T 3evt_A          134 TLTGQQLLIYG-TGQIGQSLAAKAS-ALGMHVIGVNTTGHPAD----HFHET----VAFTATADALATANFIV  196 (324)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSCCCCT----TCSEE----EEGGGCHHHHHHCSEEE
T ss_pred             cccCCeEEEEC-cCHHHHHHHHHHH-hCCCEEEEECCCcchhH----hHhhc----cccCCHHHHHhhCCEEE
Confidence            45678999999 7999999999998 68999999999865422    11111    11235677888888533

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.77  E-value=0.012  Score=48.19  Aligned_cols=66  Identities=9%  Similarity=0.108  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      .+ +|+|+| +|..|+.++..|+ ..|. +|++.+|++.+.......+...  .   .+++.+.++++|.|+++.
T Consensus       108 ~~-~vliiG-aGg~a~ai~~~L~-~~G~~~I~v~nR~~~ka~~la~~~~~~--~---~~~~~~~~~~aDiVInat  174 (253)
T 3u62_A          108 KE-PVVVVG-AGGAARAVIYALL-QMGVKDIWVVNRTIERAKALDFPVKIF--S---LDQLDEVVKKAKSLFNTT  174 (253)
T ss_dssp             CS-SEEEEC-CSHHHHHHHHHHH-HTTCCCEEEEESCHHHHHTCCSSCEEE--E---GGGHHHHHHTCSEEEECS
T ss_pred             CC-eEEEEC-cHHHHHHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHcccC--C---HHHHHhhhcCCCEEEECC
Confidence            45 899999 4999999999999 5788 7999999877654323333322  2   234667788888777663

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.70  E-value=0.011  Score=49.58  Aligned_cols=68  Identities=19%  Similarity=0.162  Sum_probs=48.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ...+++|+|+| .|.||+.+++.|. ..|.+|++.+|++.+.. ....++..+  +   .+++.+.++.+|.|+..
T Consensus       152 ~l~g~~v~IiG-~G~iG~~~a~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~--~---~~~l~~~l~~aDvVi~~  220 (293)
T 3d4o_A          152 TIHGANVAVLG-LGRVGMSVARKFA-ALGAKVKVGARESDLLARIAEMGMEPF--H---ISKAAQELRDVDVCINT  220 (293)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHTTSEEE--E---GGGHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEe-eCHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHCCCeec--C---hhhHHHHhcCCCEEEEC
Confidence            34578999999 6999999999998 67889999999865422 112234432  1   24567788888854444

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.68  E-value=0.022  Score=48.51  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++....    .+...    ....++.++++.+|.|
T Consensus       137 ~l~g~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~----~~~~~----~~~~~l~ell~~aDvV  198 (324)
T 3hg7_A          137 GLKGRTLLILG-TGSIGQHIAHTGK-HFGMKVLGVSRSGRERA----GFDQV----YQLPALNKMLAQADVI  198 (324)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCCCCT----TCSEE----ECGGGHHHHHHTCSEE
T ss_pred             ccccceEEEEE-ECHHHHHHHHHHH-hCCCEEEEEcCChHHhh----hhhcc----cccCCHHHHHhhCCEE
Confidence            45678999999 7999999999998 68999999999874321    11111    1235678899999953

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.67  E-value=0.013  Score=49.52  Aligned_cols=63  Identities=17%  Similarity=0.144  Sum_probs=45.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++.+......++..     .   ++.++++.+|.|+
T Consensus       139 ~l~g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~~g~~~-----~---~l~ell~~aDvV~  201 (307)
T 1wwk_A          139 ELEGKTIGIIG-FGRIGYQVAKIAN-ALGMNILLYDPYPNEERAKEVNGKF-----V---DLETLLKESDVVT  201 (307)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCCHHHHHHTTCEE-----C---CHHHHHHHCSEEE
T ss_pred             ccCCceEEEEc-cCHHHHHHHHHHH-HCCCEEEEECCCCChhhHhhcCccc-----c---CHHHHHhhCCEEE
Confidence            44678999999 7999999999998 6899999999987652211223332     1   3567888888533

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.66  E-value=0.019  Score=49.32  Aligned_cols=62  Identities=16%  Similarity=0.099  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|+| .|.||+.+++.|. .-|++|++.+|.+.+..... +++..       +++.++++.+|.|
T Consensus       170 ~l~gktvGIIG-lG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~-g~~~~-------~~l~ell~~sDvV  231 (345)
T 4g2n_A          170 GLTGRRLGIFG-MGRIGRAIATRAR-GFGLAIHYHNRTRLSHALEE-GAIYH-------DTLDSLLGASDIF  231 (345)
T ss_dssp             CCTTCEEEEES-CSHHHHHHHHHHH-TTTCEEEEECSSCCCHHHHT-TCEEC-------SSHHHHHHTCSEE
T ss_pred             ccCCCEEEEEE-eChhHHHHHHHHH-HCCCEEEEECCCCcchhhhc-CCeEe-------CCHHHHHhhCCEE
Confidence            44678999999 7999999999998 78999999999864322111 33221       3567888888853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.65  E-value=0.0083  Score=52.07  Aligned_cols=72  Identities=17%  Similarity=0.266  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecC------------------CCHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDL------------------LNPLDIK   87 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~------------------~~~~~l~   87 (303)
                      .+++|+|+|+ |-+|..+++.|. ..|.+|++.+|++.+.. ....+.+++..|.                  .+.+.+.
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~-~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAK-RLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHH-HHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            4679999995 999999999998 67889999999986532 2223444443221                  1234678


Q ss_pred             HHHhccCceeEEe
Q 042242           88 RKLTLLEDVTHIF  100 (303)
Q Consensus        88 ~~~~~~~~V~~~~  100 (303)
                      +.++++|.||.++
T Consensus       261 e~l~~aDIVI~tv  273 (381)
T 3p2y_A          261 DAITKFDIVITTA  273 (381)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             HHHhcCCEEEECC
Confidence            8889999766654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.65  E-value=0.0091  Score=49.56  Aligned_cols=38  Identities=13%  Similarity=0.110  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..+++|+|+|+ |.+|+.++..|+ ..|.+|++.+|+..+
T Consensus       117 l~~k~vlViGa-Gg~g~a~a~~L~-~~G~~V~v~~R~~~~  154 (271)
T 1nyt_A          117 RPGLRILLIGA-GGASRGVLLPLL-SLDCAVTITNRTVSR  154 (271)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHH-HTTCEEEEECSSHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            35689999997 789999999999 577899999998654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.63  E-value=0.012  Score=49.68  Aligned_cols=68  Identities=16%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ...+++|+|+| .|.||+.+++.|. ..|.+|++.+|++.+.. ....+++.+  +   ..++.+.++.+|.|+..
T Consensus       154 ~l~g~~v~IiG-~G~iG~~~a~~l~-~~G~~V~~~d~~~~~~~~~~~~g~~~~--~---~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          154 TIHGSQVAVLG-LGRTGMTIARTFA-ALGANVKVGARSSAHLARITEMGLVPF--H---TDELKEHVKDIDICINT  222 (300)
T ss_dssp             CSTTSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHTTCEEE--E---GGGHHHHSTTCSEEEEC
T ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCCeEE--c---hhhHHHHhhCCCEEEEC
Confidence            34578999999 5999999999998 67899999999875432 111234332  1   24577788888854444

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.62  E-value=0.029  Score=46.42  Aligned_cols=56  Identities=20%  Similarity=0.152  Sum_probs=43.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ...+++++|+|++|.+|+.++..|+ ..|..|+++.++..                    .+.+.++.+|.|+....
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~-~~gAtVtv~hs~T~--------------------~L~~~~~~ADIVI~Avg  213 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELL-LGGCTVTVTHRFTR--------------------DLADHVSRADLVVVAAG  213 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHH-HTTCEEEEECTTCS--------------------CHHHHHHTCSEEEECCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHH-HCCCeEEEEeCCCc--------------------CHHHHhccCCEEEECCC
Confidence            3467999999999999999999998 67889998866431                    25678888886655543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.59  E-value=0.028  Score=46.93  Aligned_cols=55  Identities=22%  Similarity=0.168  Sum_probs=43.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHH--HHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIK--RKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~--~~~~~~~~V~~~~~  101 (303)
                      ..+++++|+|++|.+|+.++..|+ ..|..|+++.|+..                    .+.  +.++.+|.||....
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~-~~gAtVtv~~~~T~--------------------~l~l~~~~~~ADIVI~Avg  219 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLM-KENATVTIVHSGTS--------------------TEDMIDYLRTADIVIAAMG  219 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHH-HTTCEEEEECTTSC--------------------HHHHHHHHHTCSEEEECSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEeCCCC--------------------CchhhhhhccCCEEEECCC
Confidence            467899999999999999999999 68889998887532                    233  78889986666544

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.59  E-value=0.0035  Score=54.02  Aligned_cols=39  Identities=13%  Similarity=0.227  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+|++|.||..+++.+. .. |++|+++++++.+.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~-~~~Ga~Vi~~~~~~~~~  209 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAK-AVSGATIIGVDVREEAV  209 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HHTCCEEEEEESSHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHH-HcCCCeEEEEcCCHHHH
Confidence            46799999999999999999887 56 88999999876553

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.57  E-value=0.031  Score=46.29  Aligned_cols=56  Identities=23%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ...+++++|+|++|.+|+.++..|+ ..|..|+++.|+..                    .+.+.++.+|.|+...+
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~-~~gAtVtv~hs~t~--------------------~L~~~~~~ADIVI~Avg  213 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLL-NAKATVTTCHRFTT--------------------DLKSHTTKADILIVAVG  213 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHH-HTTCEEEEECTTCS--------------------SHHHHHTTCSEEEECCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHH-HCCCeEEEEeCCch--------------------hHHHhcccCCEEEECCC
Confidence            3467899999999999999999998 67888988766521                    36678888886665543

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.56  E-value=0.013  Score=49.16  Aligned_cols=60  Identities=13%  Similarity=0.020  Sum_probs=45.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++.+..    .+.       ..+++.++++.+|.|+
T Consensus       119 ~l~g~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~----~~~-------~~~~l~ell~~aDiV~  178 (290)
T 3gvx_A          119 LLYGKALGILG-YGGIGRRVAHLAK-AFGMRVIAYTRSSVDQN----VDV-------ISESPADLFRQSDFVL  178 (290)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-HHTCEEEEECSSCCCTT----CSE-------ECSSHHHHHHHCSEEE
T ss_pred             eeecchheeec-cCchhHHHHHHHH-hhCcEEEEEeccccccc----ccc-------ccCChHHHhhccCeEE
Confidence            45678999999 7999999999998 68999999999875421    111       1125677888888533

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.55  E-value=0.017  Score=50.61  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEec----------------CCC------H
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCD----------------LLN------P   83 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D----------------~~~------~   83 (303)
                      .+.+|+|+|+ |-+|...++.+. ..|.+|++.++++.... ....+..++..+                +++      .
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~-~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATAR-RLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            4579999995 999999999998 68999999999986532 112244443332                122      3


Q ss_pred             HHHHHHHhccCceeEEee
Q 042242           84 LDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        84 ~~l~~~~~~~~~V~~~~~  101 (303)
                      +.+.+.++++|.||.++.
T Consensus       267 ~~l~e~l~~aDVVI~tvl  284 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTAL  284 (405)
T ss_dssp             HHHHHHHHTCSEEEECCC
T ss_pred             hHHHHHhcCCCEEEECCc
Confidence            478889999997777643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.55  E-value=0.028  Score=46.26  Aligned_cols=54  Identities=22%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      ..+++++|.|+++.+|+.++..|+ ..|..|+++.|+.                    ..+.+.++.+|.|+...
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~-~~gAtVtv~~~~t--------------------~~L~~~~~~ADIVI~Av  201 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLL-NRNYTVSVCHSKT--------------------KDIGSMTRSSKIVVVAV  201 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHH-HTTCEEEEECTTC--------------------SCHHHHHHHSSEEEECS
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHH-HCCCeEEEEeCCc--------------------ccHHHhhccCCEEEECC
Confidence            467999999999999999999999 6788999887643                    23567888888655553

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.53  E-value=0.012  Score=50.34  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=29.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      .+|.|+||||++|+.+++.|.....+++..+.++.
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~   39 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSA   39 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecC
Confidence            68999999999999999999855788987776544

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.51  E-value=0.043  Score=46.36  Aligned_cols=102  Identities=19%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           30 VAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ||.|+|| |.+|..++..|+ ..++ +|.++++++.+..     .      ......+...  .|.    +.++++|.|+
T Consensus         1 KI~IiGa-G~vG~~~a~~l~-~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~----~a~~~aD~Vi   72 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLM-MRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSY----EDMRGSDIVL   72 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHH-HHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGGTTCSEEE
T ss_pred             CEEEECc-CHHHHHHHHHHH-hCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCH----HHhCCCCEEE
Confidence            5899997 999999999988 4566 6999999875432     0      1112333321  121    3688888666


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      ..+......  .....+....|..-...+++.+.+.++....++
T Consensus        73 ~~ag~~~k~--G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv  114 (308)
T 2d4a_B           73 VTAGIGRKP--GMTREQLLEANANTMADLAEKIKAYAKDAIVVI  114 (308)
T ss_dssp             ECCSCCCCS--SCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EeCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence            665443222  222234789999999999999988765543333

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.51  E-value=0.0062  Score=51.55  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +.++|.|+| .|.+|..+++.|+ +.|++|++.+|++.+.
T Consensus         8 ~~~~IgiIG-~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~   45 (306)
T 3l6d_A            8 FEFDVSVIG-LGAMGTIMAQVLL-KQGKRVAIWNRSPGKA   45 (306)
T ss_dssp             CSCSEEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSHHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCHHHH
Confidence            456899999 7999999999999 6899999999987653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.50  E-value=0.022  Score=48.28  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=43.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++.+..          .+.   .++.++++.+|.|
T Consensus       141 ~l~g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~~~d~~~~~~~----------~~~---~~l~ell~~aDvV  197 (311)
T 2cuk_A          141 DLQGLTLGLVG-MGRIGQAVAKRAL-AFGMRVVYHARTPKPLP----------YPF---LSLEELLKEADVV  197 (311)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCCSSS----------SCB---CCHHHHHHHCSEE
T ss_pred             CCCCCEEEEEE-ECHHHHHHHHHHH-HCCCEEEEECCCCcccc----------ccc---CCHHHHHhhCCEE
Confidence            44678999999 7999999999998 68999999998765421          222   2466788888853

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.50  E-value=0.02  Score=49.05  Aligned_cols=63  Identities=21%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++.+......++..     .   ++.++++.+|.|+
T Consensus       162 ~l~g~tvgIIG-lG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~g~~~-----~---~l~ell~~aDvV~  224 (335)
T 2g76_A          162 ELNGKTLGILG-LGRIGREVATRMQ-SFGMKTIGYDPIISPEVSASFGVQQ-----L---PLEEIWPLCDFIT  224 (335)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEECSSSCHHHHHHTTCEE-----C---CHHHHGGGCSEEE
T ss_pred             CCCcCEEEEEe-ECHHHHHHHHHHH-HCCCEEEEECCCcchhhhhhcCcee-----C---CHHHHHhcCCEEE
Confidence            45678999999 7999999999998 6899999999876542211223332     1   3667888888533

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.49  E-value=0.017  Score=49.03  Aligned_cols=63  Identities=13%  Similarity=0.028  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++.+......++..     .   ++.++++.+|.|+
T Consensus       139 ~l~g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~~g~~~-----~---~l~ell~~aDvVv  201 (313)
T 2ekl_A          139 ELAGKTIGIVG-FGRIGTKVGIIAN-AMGMKVLAYDILDIREKAEKINAKA-----V---SLEELLKNSDVIS  201 (313)
T ss_dssp             CCTTCEEEEES-CSHHHHHHHHHHH-HTTCEEEEECSSCCHHHHHHTTCEE-----C---CHHHHHHHCSEEE
T ss_pred             CCCCCEEEEEe-eCHHHHHHHHHHH-HCCCEEEEECCCcchhHHHhcCcee-----c---CHHHHHhhCCEEE
Confidence            44678999999 7999999999998 6899999999987653221223432     1   3557788888533

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.44  E-value=0.051  Score=43.05  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ..++|.|+| .|.+|+.++..|. +.|++|++.+|++.
T Consensus        18 ~~~~I~iiG-~G~mG~~la~~l~-~~g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFG-KGNMGQAIGHNFE-IAGHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECTTCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            346899999 7999999999998 68899999988753

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.39  E-value=0.0071  Score=52.54  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      .+++|+|+|+ |.||..+++.+. ..|.+|+++++++
T Consensus       180 ~g~~VlV~Ga-G~vG~~~~q~a~-~~Ga~Vi~~~~~~  214 (366)
T 2cdc_A          180 NCRKVLVVGT-GPIGVLFTLLFR-TYGLEVWMANRRE  214 (366)
T ss_dssp             TTCEEEEESC-HHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCEEEEEeCCc
Confidence            3689999999 999999999887 5788999999987

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.36  E-value=0.026  Score=50.56  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      ..++|+|.| .|.||.++++.|.  .+++|.++.+++.++.   ...++..++.+|.+|.+-|.+. +..+|
T Consensus       234 ~~~~v~I~G-gG~ig~~lA~~L~--~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D  302 (461)
T 4g65_A          234 PYRRIMIVG-GGNIGASLAKRLE--QTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVD  302 (461)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHT--TTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCS
T ss_pred             cccEEEEEc-chHHHHHHHHHhh--hcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhc
Confidence            357999999 6999999999985  4689999999887653   2346788999999999977554 55555

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*

Probab=95.32  E-value=0.027  Score=50.26  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=46.5

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEe------cCCCHHHHHHHHhccC
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISC------DLLNPLDIKRKLTLLE   94 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~------D~~~~~~l~~~~~~~~   94 (303)
                      +.+|.++|||+| .|.+|..+++.+. +.|++|++++..+....  ....+-.+...      +..|.+.+.++++..+
T Consensus         2 n~m~~~kiLI~g-~g~~a~~i~~aa~-~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~   78 (446)
T 3ouz_A            2 NAMEIKSILIAN-RGEIALRALRTIK-EMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAE   78 (446)
T ss_dssp             CTTCCCEEEECC-CHHHHHHHHHHHH-HTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHT
T ss_pred             CccccceEEEEC-CCHHHHHHHHHHH-HcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhC
Confidence            456789999999 6889999999998 68999999875443211  11112222222      6677778887776543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.32  E-value=0.025  Score=49.43  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCC----------------------CH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLL----------------------NP   83 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~----------------------~~   83 (303)
                      .+++|+|+| .|-+|..+++.+. ..|.+|++.+|++.+.. ....+..++..|..                      +.
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~-~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAK-RLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            578999999 5999999999998 67889999999876532 11123333211221                      12


Q ss_pred             HHHHHHHhccCceeEEe
Q 042242           84 LDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        84 ~~l~~~~~~~~~V~~~~  100 (303)
                      +.+.+.++++|.|+++.
T Consensus       249 ~~l~~~~~~aDvVi~~~  265 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTA  265 (384)
T ss_dssp             HHHHHHHTTCSEEEECC
T ss_pred             HHHHHHhCCCCEEEECC
Confidence            33777888888777764

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.30  E-value=0.011  Score=52.74  Aligned_cols=72  Identities=25%  Similarity=0.195  Sum_probs=47.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC---eEEEEecCCcccc-ccCCCeEEEEecC--CCHH-HHHHHHhccCceeEEe
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW---KVYGIARKPEITA-IQSSSYCFISCDL--LNPL-DIKRKLTLLEDVTHIF  100 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~-~~~~~~~~~~~D~--~~~~-~l~~~~~~~~~V~~~~  100 (303)
                      +++|+|+| .|.||+.++..|.+..++   +|++.+....... ....++.+...++  .|.+ .+.+++++.|.|++++
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~s   91 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVS   91 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEECC
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEECC
Confidence            46899999 799999999999865666   5888887654322 1112455555555  4443 3556776656677753

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=95.30  E-value=0.12  Score=41.92  Aligned_cols=63  Identities=21%  Similarity=0.282  Sum_probs=41.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEE-EecCCccc-------cc-cCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYG-IARKPEIT-------AI-QSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~-~~r~~~~~-------~~-~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      ++||.|+|+ |.+|+.+++.+.+..+ ++.+ ++|++...       .. ...+..+ .+|++.++.+.+.++ ..
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~~~~gv~v~~dl~~l~~~DV-vIDft~p~a~~~~~~-l~   74 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPKATTPYQQYQHIADVKGADV-AIDFSNPNLLFPLLD-ED   74 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC--CCSCBCSCTTTCTTCSE-EEECSCHHHHHHHHT-SC
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCccccCCCceeCCHHHHhCCCE-EEEeCChHHHHHHHH-Hh
Confidence            369999998 9999999999985455 8655 56654311       00 0012333 368899988877776 44

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=95.30  E-value=0.027  Score=48.80  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=25.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC---eEEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW---KVYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~   62 (303)
                      ++|.|.||||++|+.+++.|+...++   +++.+..+
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~   38 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC
Confidence            58999999999999999955535544   45666554

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.29  E-value=0.02  Score=49.84  Aligned_cols=72  Identities=10%  Similarity=0.043  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHH--hccCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKL--TLLEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~--~~~~~V~~~~~  101 (303)
                      .+.+|+|+||+|.||..+++.+. ..|.+|+++++. .+.. ....+...+ .|..+.+..+++.  .++|.|+.+++
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~-~~Ga~Vi~~~~~-~~~~~~~~lGa~~v-~~~~~~~~~~~~~~~~g~D~vid~~g  257 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMK-AWDAHVTAVCSQ-DASELVRKLGADDV-IDYKSGSVEEQLKSLKPFDFILDNVG  257 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECG-GGHHHHHHTTCSEE-EETTSSCHHHHHHTSCCBSEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEeCh-HHHHHHHHcCCCEE-EECCchHHHHHHhhcCCCCEEEECCC
Confidence            46799999999999999998887 678899988843 3322 222233322 3554433222222  24565666543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.28  E-value=0.01  Score=51.11  Aligned_cols=63  Identities=14%  Similarity=0.096  Sum_probs=45.5

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|.| .|.||+.+++.|. ..|++|++.+|+.........+++..       +++.++++.+|.|
T Consensus       157 ~l~g~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~g~~~~-------~~l~ell~~aDiV  219 (352)
T 3gg9_A          157 VLKGQTLGIFG-YGKIGQLVAGYGR-AFGMNVLVWGRENSKERARADGFAVA-------ESKDALFEQSDVL  219 (352)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSHHHHHHHHHTTCEEC-------SSHHHHHHHCSEE
T ss_pred             cCCCCEEEEEe-ECHHHHHHHHHHH-hCCCEEEEECCCCCHHHHHhcCceEe-------CCHHHHHhhCCEE
Confidence            44678999999 7999999999998 68999999998753221122344321       2466788888853

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.27  E-value=0.017  Score=48.13  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      .+++++|+|+ |..|+.++..|. ..|. +|+++.|+..+.......+..+  +   .+.+.+ + ++|.||++.
T Consensus       121 ~~k~vlvlGa-GGaaraia~~L~-~~G~~~v~v~nRt~~ka~~La~~~~~~--~---~~~l~~-l-~~DivInaT  186 (282)
T 3fbt_A          121 KNNICVVLGS-GGAARAVLQYLK-DNFAKDIYVVTRNPEKTSEIYGEFKVI--S---YDELSN-L-KGDVIINCT  186 (282)
T ss_dssp             TTSEEEEECS-STTHHHHHHHHH-HTTCSEEEEEESCHHHHHHHCTTSEEE--E---HHHHTT-C-CCSEEEECS
T ss_pred             cCCEEEEECC-cHHHHHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHhcCcc--c---HHHHHh-c-cCCEEEECC
Confidence            5789999995 889999999998 5788 7999999887654323334322  1   233333 4 566666663

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.27  E-value=0.0079  Score=50.32  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.|+| .|.+|..+++.|. ..||+|++.+|++.+.
T Consensus         2 ~~I~iiG-~G~mG~~~a~~l~-~~G~~V~~~dr~~~~~   37 (287)
T 3pdu_A            2 TTYGFLG-LGIMGGPMAANLV-RAGFDVTVWNRNPAKC   37 (287)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHH-HHTCCEEEECSSGGGG
T ss_pred             CeEEEEc-cCHHHHHHHHHHH-HCCCeEEEEcCCHHHH
Confidence            5799999 7999999999999 6799999999987654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.23  E-value=0.0037  Score=55.79  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.|+| +|++|..++..|. ..|++|++++|++.+.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la-~~G~~V~~~d~~~~~~   36 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLS-ARGHEVIGVDVSSTKI   36 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEEEECSCHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCHHHH
Confidence            3799999 7999999999998 6899999999986653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.19  E-value=0.016  Score=47.23  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..+.++|.|+| +|.+|+.+++.|. ..|++|++.+|++.+
T Consensus        16 ~~~~~kIgiIG-~G~mG~alA~~L~-~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           16 YFQGMKIAVLG-TGTVGRTMAGALA-DLGHEVTIGTRDPKA   54 (245)
T ss_dssp             ---CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccCCCeEEEEC-CCHHHHHHHHHHH-HCCCEEEEEeCChhh
Confidence            44568999998 8999999999999 689999999998765

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.19  E-value=0.019  Score=48.82  Aligned_cols=64  Identities=16%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec-CCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR-KPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+| ++........++..  .     +++.++++.+|.|+
T Consensus       143 ~l~g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~~~g~~~--~-----~~l~ell~~aDvVi  207 (320)
T 1gdh_A          143 KLDNKTLGIYG-FGSIGQALAKRAQ-GFDMDIDYFDTHRASSSDEASYQATF--H-----DSLDSLLSVSQFFS  207 (320)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEECSSCCCHHHHHHHTCEE--C-----SSHHHHHHHCSEEE
T ss_pred             CCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEECCCCcChhhhhhcCcEE--c-----CCHHHHHhhCCEEE
Confidence            44678999999 7999999999998 68999999999 76542111123322  1     13567888888433

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.18  E-value=0.014  Score=50.14  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHH---HHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPL---DIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~---~l~~~~~~~~~V~~~~  100 (303)
                      .+++|+|+|+ |.||..+++.+. ..|.+|++++|++.+.. ....+... ..|..+.+   .+.+...++|.|++++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~-~~Ga~Vi~~~~~~~~~~~~~~lGa~~-~~d~~~~~~~~~~~~~~~~~d~vid~~  238 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADL-VVNPLKEDAAKFMKEKVGGVHAAVVTA  238 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHTTCSE-EECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHCCCCE-EecCCCccHHHHHHHHhCCCCEEEECC
Confidence            4579999999 669999999887 67889999998866533 11223332 24665432   2333333455555554

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.17  E-value=0.13  Score=43.22  Aligned_cols=99  Identities=10%  Similarity=-0.005  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      .+||.|+|| |.+|..++..|+ ..|+  +|.++++++....       ...++++. ..|      + +.++++|.|+.
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~-~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~-t~d------~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAIS-AKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEI-SKD------L-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HHTCCSEEEEECCC-----CHHHHHHHTCTTEEE-ESC------G-GGGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE-eCC------H-HHHCCCCEEEE
Confidence            369999995 999999999998 5677  8999999864110       11123333 122      2 45888886666


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      .++..-   ......+....|..-...+++.+.+.++.-..
T Consensus        84 aag~~~---pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~i  121 (303)
T 2i6t_A           84 TVNSLG---SSQSYLDVVQSNVDMFRALVPALGHYSQHSVL  121 (303)
T ss_dssp             CCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            654431   22233457889999999999999887655443

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=95.17  E-value=0.019  Score=49.18  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhc--CCCeEEEEec
Q 042242           28 KNVAVIFGVTGLVGKELARRLIST--ANWKVYGIAR   61 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r   61 (303)
                      +.+|.|.||||++|+.+++.|+..  ..++|+++..
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s   38 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLAS   38 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence            368999999999999999999844  4577777764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.17  E-value=0.029  Score=48.02  Aligned_cols=59  Identities=14%  Similarity=0.026  Sum_probs=44.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++...    .++..       ..++.++++.+|.|
T Consensus       168 ~l~gktiGIIG-lG~IG~~vA~~l~-~~G~~V~~~dr~~~~~----~~~~~-------~~sl~ell~~aDvV  226 (340)
T 4dgs_A          168 SPKGKRIGVLG-LGQIGRALASRAE-AFGMSVRYWNRSTLSG----VDWIA-------HQSPVDLARDSDVL  226 (340)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEECSSCCTT----SCCEE-------CSSHHHHHHTCSEE
T ss_pred             cccCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEcCCcccc----cCcee-------cCCHHHHHhcCCEE
Confidence            45678999999 7999999999998 7899999999986542    11211       13567889999853

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.16  E-value=0.02  Score=48.65  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |+++|.|+| +|-+|..++..|. ..|++|++++|++
T Consensus         1 M~mkI~IiG-aGaiG~~~a~~L~-~~g~~V~~~~r~~   35 (320)
T 3i83_A            1 MSLNILVIG-TGAIGSFYGALLA-KTGHCVSVVSRSD   35 (320)
T ss_dssp             --CEEEEES-CCHHHHHHHHHHH-HTTCEEEEECSTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHH-hCCCeEEEEeCCh
Confidence            457999999 6999999999998 6789999999986

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.13  E-value=0.035  Score=47.61  Aligned_cols=60  Identities=15%  Similarity=0.082  Sum_probs=44.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|.| .|.||+.+++.|. .-|++|++.+|++....  ...+..     .   ++.++++.+|.|
T Consensus       145 ~l~gktvgIiG-lG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~--~~~~~~-----~---~l~ell~~aDvV  204 (343)
T 2yq5_A          145 EIYNLTVGLIG-VGHIGSAVAEIFS-AMGAKVIAYDVAYNPEF--EPFLTY-----T---DFDTVLKEADIV  204 (343)
T ss_dssp             CGGGSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCCGGG--TTTCEE-----C---CHHHHHHHCSEE
T ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHh-hCCCEEEEECCChhhhh--hccccc-----c---CHHHHHhcCCEE
Confidence            34578999999 7999999999998 68999999999875421  112222     1   467788888853

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.11  E-value=0.009  Score=49.71  Aligned_cols=64  Identities=11%  Similarity=0.152  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccccc--CCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQ--SSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+++|+|+| +|.+|+.++..|. ..|++|++.+|++.+....  ..++.+  .+     ++.+.++.+|.|+.+
T Consensus       128 ~~~~v~iiG-aG~~g~aia~~L~-~~g~~V~v~~r~~~~~~~l~~~~g~~~--~~-----~~~~~~~~aDiVi~a  193 (275)
T 2hk9_A          128 KEKSILVLG-AGGASRAVIYALV-KEGAKVFLWNRTKEKAIKLAQKFPLEV--VN-----SPEEVIDKVQVIVNT  193 (275)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHH-HHTCEEEEECSSHHHHHHHTTTSCEEE--CS-----CGGGTGGGCSEEEEC
T ss_pred             CCCEEEEEC-chHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHcCCee--eh-----hHHhhhcCCCEEEEe
Confidence            457999999 5999999999998 5678999999987553311  112221  11     233466777755555

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.11  E-value=0.043  Score=44.84  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   63 (303)
                      ..++|+|+| .|.+|+++++.|. ..|. +|++++++.
T Consensus        30 ~~~~VlVvG-~Gg~G~~va~~La-~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVG-LGGLGCAASQYLA-SAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEEC-CSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             hCCeEEEEe-eCHHHHHHHHHHH-HcCCCeEEEEcCCC
Confidence            457999999 5899999999998 5676 799999886

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.11  E-value=0.013  Score=50.71  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=32.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +++|.|+| .|.+|..+++.|+ ..|++|++.+|++.+.
T Consensus        22 ~mkIgiIG-lG~mG~~~A~~L~-~~G~~V~v~dr~~~~~   58 (358)
T 4e21_A           22 SMQIGMIG-LGRMGADMVRRLR-KGGHECVVYDLNVNAV   58 (358)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHHHH
T ss_pred             CCEEEEEC-chHHHHHHHHHHH-hCCCEEEEEeCCHHHH
Confidence            47999999 7999999999999 6899999999987653

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.10  E-value=0.0098  Score=51.26  Aligned_cols=72  Identities=8%  Similarity=0.006  Sum_probs=46.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHH---HHHHHHh--ccCceeEEee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPL---DIKRKLT--LLEDVTHIFW  101 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~---~l~~~~~--~~~~V~~~~~  101 (303)
                      .++|+|+||+|.||...++.+. ..|.+|+++++++.+.. ....+... ..|..+.+   .+.+...  +.|.|+.+++
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~-~~Ga~Vi~~~~~~~~~~~~~~~Ga~~-~~~~~~~~~~~~v~~~~~~~g~D~vid~~g  242 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAK-EEGFRPIVTVRRDEQIALLKDIGAAH-VLNEKAPDFEATLREVMKAEQPRIFLDAVT  242 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHH-HHTCEEEEEESCGGGHHHHHHHTCSE-EEETTSTTHHHHHHHHHHHHCCCEEEESSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHcCCCE-EEECCcHHHHHHHHHHhcCCCCcEEEECCC
Confidence            3799999999999999998887 57889999998876543 11122322 23444432   3333332  4666666643

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.10  E-value=0.054  Score=45.76  Aligned_cols=99  Identities=14%  Similarity=-0.008  Sum_probs=59.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCccccc-----c------CCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITAI-----Q------SSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~-----~------~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ++|.|+| +|.+|..++..|. ..|  ++|++++|++.....     .      ...+.+..   .|.    +.++++|.
T Consensus         2 ~kI~VIG-aG~~G~~la~~L~-~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~d~----~~~~~aDv   72 (309)
T 1hyh_A            2 RKIGIIG-LGNVGAAVAHGLI-AQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---NDW----AALADADV   72 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SCG----GGGTTCSE
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe---CCH----HHhCCCCE
Confidence            5899999 7999999999998 467  789999998654320     0      01223222   232    35677775


Q ss_pred             eeEEeeccccc--CChHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 042242           96 VTHIFWVTWAS--QFASDMHKCCEQNKAMMCNALNAILPRAKA  136 (303)
Q Consensus        96 V~~~~~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~  136 (303)
                      |+.++......  .......+....|......+++.+.+.++.
T Consensus        73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~  115 (309)
T 1hyh_A           73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH  115 (309)
T ss_dssp             EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            55443322210  011122235778888888888888776543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.10  E-value=0.035  Score=51.19  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      ++|+|+|+ |-+|+++++.|. +.|++|+++++++......   ..++.+|.+|.+.++++ ++.+|
T Consensus       349 ~~viIiG~-G~~G~~la~~L~-~~g~~v~vid~d~~~~~~~---~~~i~gD~t~~~~L~~agi~~ad  410 (565)
T 4gx0_A          349 ELIFIIGH-GRIGCAAAAFLD-RKPVPFILIDRQESPVCND---HVVVYGDATVGQTLRQAGIDRAS  410 (565)
T ss_dssp             CCEEEECC-SHHHHHHHHHHH-HTTCCEEEEESSCCSSCCS---SCEEESCSSSSTHHHHHTTTSCS
T ss_pred             CCEEEECC-CHHHHHHHHHHH-HCCCCEEEEECChHHHhhc---CCEEEeCCCCHHHHHhcCccccC
Confidence            78999994 999999999998 6899999999998765422   27899999999988664 23444

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.09  E-value=0.015  Score=49.14  Aligned_cols=36  Identities=25%  Similarity=0.208  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +++|.|+| .|.+|+.++..|. ..|++|++++|++..
T Consensus         3 ~m~i~iiG-~G~~G~~~a~~l~-~~g~~V~~~~r~~~~   38 (316)
T 2ew2_A            3 AMKIAIAG-AGAMGSRLGIMLH-QGGNDVTLIDQWPAH   38 (316)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CCeEEEEC-cCHHHHHHHHHHH-hCCCcEEEEECCHHH
Confidence            36899999 5999999999998 689999999998654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.09  E-value=0.02  Score=49.11  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|||+||+|.||..+++.+. ..|.+|+++++++.+.
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~  197 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAK-GMGAKVIAVVNRTAAT  197 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSGGGH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHH
Confidence            46799999999999999999887 6889999999987654

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.09  E-value=0.022  Score=49.27  Aligned_cols=62  Identities=18%  Similarity=0.078  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|+| .|.||+.+++.|. .-|++|++.+|..........++..        .++.++++.+|.|
T Consensus       173 ~l~gktvGIIG-lG~IG~~vA~~l~-~fG~~V~~~d~~~~~~~~~~~g~~~--------~~l~ell~~aDvV  234 (365)
T 4hy3_A          173 LIAGSEIGIVG-FGDLGKALRRVLS-GFRARIRVFDPWLPRSMLEENGVEP--------ASLEDVLTKSDFI  234 (365)
T ss_dssp             CSSSSEEEEEC-CSHHHHHHHHHHT-TSCCEEEEECSSSCHHHHHHTTCEE--------CCHHHHHHSCSEE
T ss_pred             ccCCCEEEEec-CCcccHHHHHhhh-hCCCEEEEECCCCCHHHHhhcCeee--------CCHHHHHhcCCEE
Confidence            34678999999 7999999999997 6899999999875432222233331        2466788888853

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.08  E-value=0.041  Score=46.98  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=44.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++.+.. ....++..     .   ++.++++.+|.|+
T Consensus       152 ~l~g~~vgIIG-~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~g~~~-----~---~l~e~l~~aDvVi  215 (330)
T 2gcg_A          152 GLTQSTVGIIG-LGRIGQAIARRLK-PFGVQRFLYTGRQPRPEEAAEFQAEF-----V---STPELAAQSDFIV  215 (330)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHG-GGTCCEEEEESSSCCHHHHHTTTCEE-----C---CHHHHHHHCSEEE
T ss_pred             CCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEECCCCcchhHHHhcCcee-----C---CHHHHHhhCCEEE
Confidence            34578999999 5999999999998 68999999998765322 11223322     1   2556788888533

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=95.04  E-value=0.072  Score=47.22  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      +.++|+|+|+ |.+|+.+++.+. +.|++|++++..+........ -..+.+|..|.+.+.+.++
T Consensus        18 ~~~~ili~g~-g~~g~~~~~a~~-~~G~~v~~v~~~~~~~~~~~a-d~~~~~~~~d~~~l~~~~~   79 (433)
T 2dwc_A           18 SAQKILLLGS-GELGKEIAIEAQ-RLGVEVVAVDRYANAPAMQVA-HRSYVGNMMDKDFLWSVVE   79 (433)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHH-HTTCEEEEEESSTTCHHHHHS-SEEEESCTTCHHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEECCCCChhhhhc-ceEEECCCCCHHHHHHHHH
Confidence            4579999995 899999999998 689999999877543211111 1355678889888888876

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.04  E-value=0.01  Score=49.98  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .++|.|+| .|.+|+.++..|. ..|++|++.+|++.+.
T Consensus         4 ~~~i~iiG-~G~~G~~~a~~l~-~~g~~V~~~~~~~~~~   40 (301)
T 3cky_A            4 SIKIGFIG-LGAMGKPMAINLL-KEGVTVYAFDLMEANV   40 (301)
T ss_dssp             CCEEEEEC-CCTTHHHHHHHHH-HTTCEEEEECSSHHHH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHH-HCCCeEEEEeCCHHHH
Confidence            36899999 7999999999998 5789999999886543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.04  E-value=0.013  Score=50.29  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .+.+|||+||+|.||..+++.+. ..|.+|+++ +++.+
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~-~~Ga~Vi~~-~~~~~  186 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIAL-ARGARVFAT-ARGSD  186 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ECHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEE-eCHHH
Confidence            46799999999999999999887 688999998 65544

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.04  E-value=0.061  Score=44.60  Aligned_cols=55  Identities=15%  Similarity=0.167  Sum_probs=43.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+++|+|+|+++.+|+.+++.|+ ..|..|+++.++.                    ..+.+.++.+|.|+....
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~-~~gAtVtv~hs~t--------------------~~L~~~~~~ADIVI~Avg  211 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELL-LAGCTTTVTHRFT--------------------KNLRHHVENADLLIVAVG  211 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHH-TTTCEEEEECSSC--------------------SCHHHHHHHCSEEEECSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHH-HCCCeEEEEeCCc--------------------hhHHHHhccCCEEEECCC
Confidence            467899999998899999999998 6788899886554                    236678888886555543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.01  E-value=0.026  Score=48.31  Aligned_cols=60  Identities=13%  Similarity=0.141  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++...    .++..    .   .++.++++.+|.|+
T Consensus       161 ~l~g~~vgIIG-~G~iG~~vA~~l~-~~G~~V~~~dr~~~~~----~g~~~----~---~~l~ell~~aDvVi  220 (333)
T 3ba1_A          161 KFSGKRVGIIG-LGRIGLAVAERAE-AFDCPISYFSRSKKPN----TNYTY----Y---GSVVELASNSDILV  220 (333)
T ss_dssp             CCTTCCEEEEC-CSHHHHHHHHHHH-TTTCCEEEECSSCCTT----CCSEE----E---SCHHHHHHTCSEEE
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEECCCchhc----cCcee----c---CCHHHHHhcCCEEE
Confidence            44578999999 6999999999998 6899999999887542    12221    1   23567888888433

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.96  E-value=0.019  Score=48.10  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      +|.|+| .|.+|+.++..|. ..|++|++.+|++.+.
T Consensus         2 ~i~iiG-~G~mG~~~a~~l~-~~g~~V~~~~~~~~~~   36 (296)
T 2gf2_A            2 PVGFIG-LGNMGNPMAKNLM-KHGYPLIIYDVFPDAC   36 (296)
T ss_dssp             CEEEEC-CSTTHHHHHHHHH-HTTCCEEEECSSTHHH
T ss_pred             eEEEEe-ccHHHHHHHHHHH-HCCCEEEEEeCCHHHH
Confidence            689999 7999999999998 6789999999987653

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=94.95  E-value=0.062  Score=46.51  Aligned_cols=63  Identities=22%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ||+|+| +|.+|+.+++.+. +.|++|++++..+........+.  +..|..|.+.+.+.+..+|.|
T Consensus         1 ~iliiG-~g~~g~~~~~a~~-~~G~~v~~~~~~~~~~~~~~a~~--~~~~~~d~~~l~~~~~~~d~v   63 (369)
T 3aw8_A            1 MIGILG-GGQLGRMLALAGY-PLGLSFRFLDPSPEACAGQVGEL--VVGEFLDEGALLRFAEGLALV   63 (369)
T ss_dssp             CEEEEC-CSHHHHHHHHHHT-TBTCCEEEEESCTTCGGGGTSEE--EECCTTCHHHHHHHHTTCSEE
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HcCCEEEEEeCCCCChHHHhhce--EecCCCCHHHHHHHHhCCCEE
Confidence            589999 6899999999997 78999999987543321111111  467899999888888666643

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.93  E-value=0.011  Score=47.49  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEE-EecCCccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYG-IARKPEIT   66 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~-~~r~~~~~   66 (303)
                      +++|.|+| +|.+|..+++.|. ..|++|++ .+|++.+.
T Consensus        23 mmkI~IIG-~G~mG~~la~~l~-~~g~~V~~v~~r~~~~~   60 (220)
T 4huj_A           23 MTTYAIIG-AGAIGSALAERFT-AAQIPAIIANSRGPASL   60 (220)
T ss_dssp             SCCEEEEE-CHHHHHHHHHHHH-HTTCCEEEECTTCGGGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEEEECCCHHHH
Confidence            46899999 8999999999998 67999998 77876553

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=94.91  E-value=0.025  Score=48.72  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=28.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIA   60 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~   60 (303)
                      +.+|.|.||+|++|+.+++.|.....++|+++.
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~   36 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS   36 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            368999999999999999999855667888885

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.87  E-value=0.017  Score=48.00  Aligned_cols=38  Identities=21%  Similarity=0.191  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|+|+ |.+|+.++..|+ ..|.+|++..|+.++.
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L~-~~G~~v~v~~R~~~~a  155 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPLL-QAQQNIVLANRTFSKT  155 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHH-HCCCEEEEEECCHHHH
Confidence            5689999996 889999999999 5678999999987553

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.86  E-value=0.0067  Score=51.66  Aligned_cols=73  Identities=14%  Similarity=0.005  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .+.+|+|+||+|.+|...++.+. ..|.+|+++++..........+... ..|..+.+.+.+.+++.|.|+.+.+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~~~~~~~~~~~lGa~~-~i~~~~~~~~~~~~~g~D~v~d~~g  224 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTASKRNHAFLKALGAEQ-CINYHEEDFLLAISTPVDAVIDLVG  224 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEECHHHHHHHHHHTCSE-EEETTTSCHHHHCCSCEEEEEESSC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEeccchHHHHHHcCCCE-EEeCCCcchhhhhccCCCEEEECCC
Confidence            46799999999999999999887 6788999888643321112223332 2455554435555566666666543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.86  E-value=0.024  Score=48.08  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.|+| .|.+|+.++..|. ..|++|++.+|++.+.
T Consensus        31 ~~I~iIG-~G~mG~~~a~~l~-~~g~~V~~~~~~~~~~   66 (316)
T 2uyy_A           31 KKIGFLG-LGLMGSGIVSNLL-KMGHTVTVWNRTAEKC   66 (316)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSGGGG
T ss_pred             CeEEEEc-ccHHHHHHHHHHH-hCCCEEEEEeCCHHHH
Confidence            6899999 6999999999998 6789999999987653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.85  E-value=0.036  Score=48.72  Aligned_cols=72  Identities=14%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCC-------------CH-------HH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLL-------------NP-------LD   85 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~-------------~~-------~~   85 (303)
                      .+++|+|+| .|-+|..+++.+. ..|.+|++++|++.... ....+..++..|..             +.       +.
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~-~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAAN-SLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            468999999 5999999999998 67889999999876532 12224444332221             11       14


Q ss_pred             HHHHHhccCceeEEe
Q 042242           86 IKRKLTLLEDVTHIF  100 (303)
Q Consensus        86 l~~~~~~~~~V~~~~  100 (303)
                      +.+.++++|.|+.++
T Consensus       249 l~e~~~~aDvVI~~~  263 (401)
T 1x13_A          249 FAAQAKEVDIIVTTA  263 (401)
T ss_dssp             HHHHHHHCSEEEECC
T ss_pred             HHHHhCCCCEEEECC
Confidence            677888888766653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.83  E-value=0.011  Score=52.15  Aligned_cols=67  Identities=16%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ..+++|+|+|+ |.+|+.+++.|. ..|. +|++++|++.+..  ...-+..+  .+   .+++.+.+.++|.|+.+
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~-~~G~~~V~v~~r~~~ra~~la~~~g~~~--~~---~~~l~~~l~~aDvVi~a  234 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLV-DRGVRAVLVANRTYERAVELARDLGGEA--VR---FDELVDHLARSDVVVSA  234 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHH-HHCCSEEEEECSSHHHHHHHHHHHTCEE--CC---GGGHHHHHHTCSEEEEC
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHcCCce--ec---HHhHHHHhcCCCEEEEc
Confidence            35789999996 999999999998 5688 7999999876531  11113332  22   23566777888866655

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=94.80  E-value=0.042  Score=46.33  Aligned_cols=57  Identities=16%  Similarity=0.288  Sum_probs=42.8

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ...+++|.|+| .|.||+.+++.|. ..|++|++.+|++. ..    +.       ....++.++++.+|.
T Consensus       121 ~l~g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~~~dr~~~-~~----~~-------~~~~~l~ell~~aDv  177 (303)
T 1qp8_A          121 LIQGEKVAVLG-LGEIGTRVGKILA-ALGAQVRGFSRTPK-EG----PW-------RFTNSLEEALREARA  177 (303)
T ss_dssp             CCTTCEEEEES-CSTHHHHHHHHHH-HTTCEEEEECSSCC-CS----SS-------CCBSCSHHHHTTCSE
T ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHH-HCCCEEEEECCCcc-cc----Cc-------ccCCCHHHHHhhCCE
Confidence            45678999999 7999999999998 68999999998765 11    11       112245678888884

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.78  E-value=0.029  Score=48.30  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      ...+++|.|+| .|.||+.+++.|. .-|++|++.+|++.... ....+++..       +++.++++.+|.|
T Consensus       161 ~l~gktvGIIG-~G~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~~aDvV  224 (351)
T 3jtm_A          161 DLEGKTIGTVG-AGRIGKLLLQRLK-PFGCNLLYHDRLQMAPELEKETGAKFV-------EDLNEMLPKCDVI  224 (351)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHG-GGCCEEEEECSSCCCHHHHHHHCCEEC-------SCHHHHGGGCSEE
T ss_pred             cccCCEEeEEE-eCHHHHHHHHHHH-HCCCEEEEeCCCccCHHHHHhCCCeEc-------CCHHHHHhcCCEE
Confidence            45678999999 7999999999998 68999999998764321 111122221       3467888888853

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.75  E-value=0.02  Score=47.91  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=29.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ++|.|+| .|.+|+.++..|. ..|++|++.+ ++.+
T Consensus         4 m~i~iiG-~G~~G~~~a~~l~-~~g~~V~~~~-~~~~   37 (295)
T 1yb4_A            4 MKLGFIG-LGIMGSPMAINLA-RAGHQLHVTT-IGPV   37 (295)
T ss_dssp             CEEEECC-CSTTHHHHHHHHH-HTTCEEEECC-SSCC
T ss_pred             CEEEEEc-cCHHHHHHHHHHH-hCCCEEEEEc-CHHH
Confidence            5899999 7999999999998 5789999888 6544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	1e-05
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	1e-05
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	8e-05
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	1e-04
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	1e-04
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	1e-04
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-04
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	4e-04
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	8e-04
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	0.001
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	0.001
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	0.001
d1t4ba1	146	c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semiald	0.002
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	0.002
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	0.002
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.003
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	0.003
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	0.003
d2g17a1	179	c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamy	0.004
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	0.004

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 29/276 (10%), Positives = 62/276 (22%), Gaps = 32/276 (11%)

Query: 26  DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLD 85
           D K+  +I G TG +GK +    IS      Y + R                  +L    
Sbjct: 1   DKKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPE-------VVSNIDKVQMLLYFK 52

Query: 86  IKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTG 145
                 +   +     +  A +    +                  L  A           
Sbjct: 53  QLGAKLIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAG-----N 107

Query: 146 MKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLG 205
           +K ++        +     D     +   +  +     + +   A  + ++     +  G
Sbjct: 108 IKRFLP------SEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAG 161

Query: 206 SSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATND 265
               SL    G +           +P                  D   V    I    + 
Sbjct: 162 YFAGSLAQLDGHM-----------MPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDP 210

Query: 266 DISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP 301
              +     +        + KE+     +     + 
Sbjct: 211 Q--TLNKTMYIRPPMNILSQKEVIQIWERLSEQNLD 244

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 30/278 (10%), Positives = 56/278 (20%), Gaps = 45/278 (16%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYC----FISCDLLNP 83
           K    + G TG  G  L R   +     V       +    +              LLN 
Sbjct: 3   KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN 61

Query: 84  LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQ 143
           + +     L E     F  T +             + A                      
Sbjct: 62  VPLMDT--LFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAG------------------ 101

Query: 144 TGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLL 203
             ++HY+            +          +   Y              +  +    G+ 
Sbjct: 102 -TIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVR---------QLGLPSTFVYAGIY 151

Query: 204 LGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT 263
                    NF      Y      L     F        +  L   D+       +    
Sbjct: 152 NN-------NFTS--LPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIF 202

Query: 264 NDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP 301
            D      G     +     +  ++  +  +    +V 
Sbjct: 203 KDGPQKWNGHRIA-LTFETLSPVQVCAAFSRALNRRVT 239

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 32/273 (11%), Positives = 72/273 (26%), Gaps = 35/273 (12%)

Query: 32  VIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKL 90
           ++ G +G  G+ + ++L      +   G+ R  +              D+ +   I    
Sbjct: 7   LVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAF 66

Query: 91  TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYV 150
             ++ +  +       +   D  K                +        +          
Sbjct: 67  QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKH 126

Query: 151 SLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVH-RPGLLLGSSHR 209
            +            + + P     N    V +   ++ LA         R G LL     
Sbjct: 127 IVVVGSMG----GTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGG 182

Query: 210 SLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISS 269
                +G            +   +   T+ +             VAE  I     ++   
Sbjct: 183 VRELLVG-----------KDDELLQTDTKTV---------PRADVAEVCIQALLFEE--- 219

Query: 270 TKGQAFNAINGPRFT------WKEIWPSIGKKF 296
            K +AF+  + P  T      +K ++  +  +F
Sbjct: 220 AKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 252

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 20/234 (8%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP-------------EITAIQSSSYC 74
           + +A+I G+TG  G  L   L+    ++V+G+ R+              +   +  +   
Sbjct: 1   RKIALITGITGQDGSYLTEFLLG-KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMK 59

Query: 75  FISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA 134
               DL +   ++R    ++ +        A+Q    +        A +       L  A
Sbjct: 60  LHYADLTDASSLRR---WIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEA 116

Query: 135 KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR--VSKSNNFYYVLEDLLKE-KLAG 191
                +     +K+Y +              E  P    S                + A 
Sbjct: 117 VRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 176

Query: 192 KVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYC 245
            +                  +         G +   L      G  +   +   
Sbjct: 177 GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGF 230

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 18/155 (11%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP-------------EITAIQSSSYC 74
           +NVA+I G+TG  G  LA  L+    ++V+GI R+                 A    +  
Sbjct: 1   RNVALITGITGQDGSYLAEFLLE-KGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMK 59

Query: 75  FISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA 134
               DL +   + +    + +      +      +               + +  +    
Sbjct: 60  LHYGDLTDSTCLVK----IINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLD 115

Query: 135 KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP 169
                  + +   +  S   L  + Q     E  P
Sbjct: 116 AVKTCGLINSVKFYQASTSELYGKVQEIPQKETTP 150

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE---ITAIQSSSYCFISCDLLNPLDI 86
            A++ G    +G++  + L + +  KV  + R        A +      +  DL +    
Sbjct: 7   RALVTGAGKGIGRDTVKALHA-SGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDAT 65

Query: 87  KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-ALKHVSLQTG 145
           ++ L  +  V  +            +    E         L ++   ++   + +  +  
Sbjct: 66  EKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV 125

Query: 146 MKHYVS 151
               V+
Sbjct: 126 PGSIVN 131

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 5/121 (4%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRK 89
             ++   +  +G+ +A  L      +V   AR  E   ++ S + ++ CDL    D+   
Sbjct: 6   GVLVLAASRGIGRAVADVLSQ-EGAEVTICARNEE--LLKRSGHRYVVCDLRK--DLDLL 60

Query: 90  LTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHY 149
              +++V  +       +         E  K  + +    ++   +       + G    
Sbjct: 61  FEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRI 120

Query: 150 V 150
           V
Sbjct: 121 V 121

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 24/275 (8%), Positives = 68/275 (24%), Gaps = 37/275 (13%)

Query: 27  AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDI 86
           +++  ++ G TG +G+ +A+  +       + + R+       ++S       LL     
Sbjct: 2   SRSRILLIGATGYIGRHVAKASLD-LGHPTFLLVRES------TASSNSEKAQLLESFKA 54

Query: 87  KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM 146
                +   +     +  A +    +       +      +   +            T  
Sbjct: 55  SGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEV--------GTVK 106

Query: 147 KHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAGKVAWSVHRPGLLLGS 206
           + + S  G   +        +     K+     +  +         + ++        G 
Sbjct: 107 RFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAE--------GIPYTYVSSNCFAG- 157

Query: 207 SHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD 266
                  FL  L   G      +   + G           +      +    I    +  
Sbjct: 158 ------YFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEED-----IGTFTIKAVDDPR 206

Query: 267 ISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP 301
             +     +  +     +  E+     KK    + 
Sbjct: 207 --TLNKTLYLRLPANTLSLNELVALWEKKIDKTLE 239

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 15/115 (13%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWKVYGIARKP------------EITAIQSSSYCFIS 77
           VA+I GVTG  G  LA  L+    ++V+GI R+             +     +  +    
Sbjct: 3   VALITGVTGQDGSYLAEFLLE-KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61

Query: 78  CDLLNPLDIKRKLTLLE--DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAI 130
            DL +  ++ R L  ++  +V ++  ++  +          + +       L AI
Sbjct: 62  GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAI 116

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-----ITAIQSSSY----CFISCDL 80
           +A++ G +G +G  +AR L+     KV G AR            +S+ Y        CDL
Sbjct: 12  LALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDL 70

Query: 81  LNPLDIKRKLTLLED----VTHIFWVTWASQFASDMHKCCEQNKAMM-CNALNAILPRAK 135
            N  DI    + +      V         ++  + +       K M   N L   +   +
Sbjct: 71  SNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTRE 130

Query: 136 ALKH 139
           A + 
Sbjct: 131 AYQS 134

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 32  VIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRK 89
           +I GV G +G  L  RL+   +++VYG+    +  +  +    + F+  D+    +    
Sbjct: 4   LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEY 63

Query: 90  LTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCN 125
              ++    +  +   +             +     
Sbjct: 64  --HVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 97

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 18/153 (11%)

Query: 31  AVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-------TAIQSSSYCFISCDLLNP 83
           A++ G+TG  G  LA+ L+    ++V+G+  +                   +   D+ + 
Sbjct: 3   ALVTGITGQDGAYLAKLLLE-KGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61

Query: 84  LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNAL--NAILPRAKALKHVS 141
             ++R             V   +  +       +     + + L    +L   +      
Sbjct: 62  CSVQRA----VIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP-- 115

Query: 142 LQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS 174
                 +  S   +    Q    DE  P   +S
Sbjct: 116 --ETRFYQASTSEMFGLIQAERQDENTPFYPRS 146

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIK 87
           +NV  I G  G+VG  L +R++   ++               +S     +          
Sbjct: 2   QNVGFI-GWRGMVGSVLMQRMVEERDFDAI------RPVFFSTSQLGQAAPSFGGTTGTL 54

Query: 88  RKLT---LLEDVTHIFWVT 103
           +       L+ +  I    
Sbjct: 55  QDAFDLEALKALDIIVTCQ 73

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 1/142 (0%)

Query: 32  VIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKL 90
           ++ G TGL G+ L  R++S     KV   ARK      +  +      +LL  LD     
Sbjct: 6   LLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDT 65

Query: 91  TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYV 150
                 T I        F +                         AL   +  +   + V
Sbjct: 66  AFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRV 125

Query: 151 SLQGLPEEKQVRFYDEECPRVS 172
             +     ++  +      R S
Sbjct: 126 KGELEQALQEQGWPQLTIARPS 147

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 14/143 (9%), Positives = 38/143 (26%), Gaps = 9/143 (6%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWKVYGIARKP----EITAIQSSSYCFISCDLLNPLD 85
             ++ G    +G+             +  + R+     E  A   +    +  D+ +P  
Sbjct: 7   TILVTGAASGIGRAALDLFAR-EGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKA 65

Query: 86  IKRKLTLLED----VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVS 141
           ++       +    +  +      +  A   +   E  + ++   L      A+    V 
Sbjct: 66  VEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL 125

Query: 142 LQTGMKHYVSLQGLPEEKQVRFY 164
            + G               +  Y
Sbjct: 126 EEGGSLVLTGSVAGLGAFGLAHY 148

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE----ITAIQSSSYCFISCDLLNPLD 85
           +A++ G +  +G+ +A  L +    KV G A        I+    ++   +  ++ +P  
Sbjct: 6   IALVTGASRGIGRAIAETLAA-RGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPAS 64

Query: 86  IKRKL-----------TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA 134
           I+  L            L+ +               + +   E N + +     A++   
Sbjct: 65  IESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAM 124

Query: 135 KALKH 139
              +H
Sbjct: 125 MKKRH 129

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIK 87
           K +A+ FG TG  G     + +  A ++V  + R      + S         + + L   
Sbjct: 4   KKIAI-FGATGQTGLTTLAQAVQ-AGYEVTVLVRDSS--RLPSEGPRPAHVVVGDVLQAA 59

Query: 88  RKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMC 124
                +     +  +       S      E  + ++ 
Sbjct: 60  DVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVA 96

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 30  VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE-----ITAIQSSSYC-FISCDLLNP 83
           VA+I G  G +G+  A+  +     KV       +        I S     F+ CD+   
Sbjct: 8   VAIITGGAGGIGETTAKLFVR-YGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKD 66

Query: 84  LDIKR-------KLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKA 136
            D++        K   L+ +     V   + ++       +  + M  N   A L    A
Sbjct: 67  EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHA 126

Query: 137 LKHVSLQTG 145
            + +     
Sbjct: 127 ARVMIPAKK 135

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANWKVYGI-ARKPEITAIQSSSYCFISCDLLNPLDI 86
            N  ++ G +G  G EL   +    +  +  +        A +  S        +  L +
Sbjct: 2   LNTLIV-GASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPL 60

Query: 87  KRKLTLLEDVTHIFWVTWAS--QFASDMHKCCEQNKAMMCNA 126
           +    + +    +  V  A+  + + D+     Q   ++ + 
Sbjct: 61  QPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDL 102

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 2/99 (2%)

Query: 28  KNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDI 86
           K+V  I G +G  G+ L + ++    + KV  I R+      ++             LD 
Sbjct: 15  KSV-FILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDD 73

Query: 87  KRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCN 125
                   DV      T   +  ++     +++  +   
Sbjct: 74  YASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSA 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	100.0
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.98
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.97
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.97
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.97
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.97
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.97
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.97
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.97
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.97
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.97
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.97
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.97
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.96
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.96
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.95
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.95
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.94
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.94
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.94
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.94
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.91
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.9
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.9
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.9
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.89
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.89
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.88
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.84
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.84
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.65
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.64
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.62
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.62
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.61
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.61
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.6
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.6
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.6
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.59
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.59
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.58
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.58
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.58
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.58
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.58
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.57
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.57
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.57
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.57
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.57
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.57
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.55
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.55
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.55
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.54
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.54
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.54
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.54
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.53
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.53
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.52
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.52
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.52
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.51
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.5
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.49
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.48
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.43
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.43
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.41
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.41
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.4
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.38
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.38
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.36
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.36
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.33
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.33
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.28
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.28
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.27
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.24
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.23
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.23
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.22
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.22
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.21
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.13
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.09
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.04
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	98.96
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	98.95
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	98.87
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	98.69
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.24
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.23
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.16
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.99
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.95
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.78
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.72
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.71
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.7
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.68
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.65
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.65
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.64
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.5
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.45
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.43
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.42
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.35
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.35
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.35
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.32
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.29
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.26
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.25
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.24
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.22
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.2
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.04
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.0
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.95
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.87
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.86
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	96.78
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.78
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.74
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.73
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.65
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.65
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.65
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.64
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.62
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.6
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.55
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.47
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.42
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.39
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.37
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.27
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.26
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.2
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.18
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.12
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.06
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.01
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.96
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.96
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.96
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.91
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.91
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.89
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.88
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.87
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.83
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.75
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.71
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.66
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.65
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.65
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.64
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.62
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.6
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.6
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.57
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.54
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.52
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.48
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.42
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.36
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.34
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.33
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.3
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.26
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.25
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.1
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.09
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.01
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.01
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.97
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.94
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.94
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.92
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.89
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.87
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.81
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.79
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.71
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.59
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.53
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.53
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.5
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.4
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.27
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.26
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.24
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.01
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.99
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.96
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.92
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.84
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.77
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.61
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.49
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.44
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.2
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.19
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.14
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.0
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.64
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.63
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.48
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.46
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.41
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.25
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.22
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.19
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.18
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.02
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.94
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.83
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.79
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.77
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.7
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.61
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.55
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.51
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.36
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.74
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	90.62
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.56
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.33
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.32
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	90.05
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.95
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	89.91
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.79
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.61
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.58
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.38
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.34
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.25
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.74
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.73
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	88.54
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.35
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.32
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	88.07
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	87.89
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.67
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.63
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	87.28
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	87.22
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.12
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.09
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	86.72
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	86.43
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.24
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.11
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.03
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	85.94
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	85.62
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	85.49
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	85.14
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	84.94
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.93
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	84.85
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	84.49
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	84.14
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.73
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.46
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	83.13
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	82.73
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.51
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	82.3
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	82.09
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.9
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	81.62
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	81.49
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	81.23
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.13
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.03
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	80.54
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	80.29

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-35  Score=256.53  Aligned_cols=249  Identities=15%  Similarity=0.127  Sum_probs=186.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc------------cccCCCeEEEEecCCCHHHHHHHHhcc--
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT------------AIQSSSYCFISCDLLNPLDIKRKLTLL--   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~------------~~~~~~~~~~~~D~~~~~~l~~~~~~~--   93 (303)
                      +|+|||||||||||++|+++|+ +.||+|++++|..+..            ....++++++++|++|.+++.+.++++  
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLL-EKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHH-HCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCC
Confidence            4789999999999999999999 6899999999965421            122357899999999999999999987  


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      |.|+|+|+......+..++...+++|+.++.+++++|++. ..+..++++.|+..+|+.+       ...|++|+++..|
T Consensus        80 d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~-------~~~~~~E~~~~~P  152 (357)
T d1db3a_          80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLV-------QEIPQKETTPFYP  152 (357)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTC-------CSSSBCTTSCCCC
T ss_pred             CEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCC-------CCCCcCCCCCCCC
Confidence            5699998877666666666668999999999999999986 4455567777776788654       3557899998887


Q ss_pred             CCccchHHHHHHHHHH-----hc--CCcceEEecCCceeecCCCCccchhhHHHHH-HHHhhhCCCceeeCCchhhhhhh
Q 042242          173 KSNNFYYVLEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVY-GAVCKHLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~  244 (303)
                      .++   |+.+|...|.     .+  + ++++++||+++|||..+..... ..+... ..+..+.... ...|++    .+
T Consensus       153 ~~~---Y~~sK~~~E~~~~~~~~~~~-l~~~ilR~~~vyGp~~~~~~~~-~~i~~~~~~~~~~~~~~-~~~g~~----~~  222 (357)
T d1db3a_         153 RSP---YAVAKLYAYWITVNYRESYG-MYACNGILFNHESPRRGETFVT-RKITRAIANIAQGLESC-LYLGNM----DS  222 (357)
T ss_dssp             CSH---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECCEECTTSCTTSHH-HHHHHHHHHHHTTSCCC-EEESCT----TC
T ss_pred             CCh---HHHHHHHHHHHHHHHHHHhC-CCEEEEEeccccCCCCCcCCCc-hHHHHHHHHHHhCCCce-EEECCC----Ce
Confidence            777   9998888872     22  4 9999999999999754322111 111111 1222222223 333433    56


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhccc
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK  299 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~  299 (303)
                      ..++++++|+|++++.++..+.     ++.||+++++.+|++|+++.+++.+|..
T Consensus       223 ~r~~~~v~D~~~a~~~~~~~~~-----~~~yni~sg~~~s~~~~~~~~~~~~g~~  272 (357)
T d1db3a_         223 LRDWGHAKDYVKMQWMMLQQEQ-----PEDFVIATGVQYSVRQFVEMAAAQLGIK  272 (357)
T ss_dssp             EECCEEHHHHHHHHHHTTSSSS-----CCCEEECCCCCEEHHHHHHHHHHTTTEE
T ss_pred             eecceeechHHHHHHHHHhCCC-----CCeEEECCCCceehHHHHHHHHHHhCCc
Confidence            6789999999999988876542     3789999999999999999999999854

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.98  E-value=8e-32  Score=231.84  Aligned_cols=247  Identities=12%  Similarity=0.099  Sum_probs=184.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeE------EEEecCCcc---c--c--ccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKV------YGIARKPEI---T--A--IQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V------~~~~r~~~~---~--~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      |||||||||||||++|+++|+ +.||+|      +.+++....   .  .  ....+++++.+|+.+...+.......|.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~-~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~   79 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLL-AGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA   79 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccce
Confidence            489999999999999999999 577754      444432211   1  1  2345799999999999999888888888


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCc
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSN  175 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~  175 (303)
                      |+|+|+.+..........+.+++|+.++.+++++|.+..  ..++++.|+..+|+..       ...+++|+++..|.++
T Consensus        80 vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~--~~~~I~~Ss~~~yg~~-------~~~~~~E~~~~~p~~~  150 (322)
T d1r6da_          80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG--VGRVVHVSTNQVYGSI-------DSGSWTESSPLEPNSP  150 (322)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT--CCEEEEEEEGGGGCCC-------SSSCBCTTSCCCCCSH
T ss_pred             EEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcC--CceEEEeecceeecCC-------CCCCCCCCCCCCCCCH
Confidence            999987765555555555678999999999999999763  4566666666677654       3567899998887777


Q ss_pred             cchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          176 NFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       176 ~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                         |+.+|...|.     .+.. ++++++||++|||++.... .++..+  ...+.  .+.++.+.|.+    .+..+++
T Consensus       151 ---Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-~~i~~~--i~~~~--~~~~i~v~~~g----~~~r~~i  218 (322)
T d1r6da_         151 ---YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLF--VTNLL--DGGTLPLYGDG----ANVREWV  218 (322)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHH--HHHHH--TTCCEEEETTS----CCEEEEE
T ss_pred             ---HHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-cHHHHH--HHHHH--cCCCcEEecCC----CeEEccE
Confidence               9998887772     2222 9999999999999754321 122221  11122  25566665544    5667889


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +++|+|++++.++.++..    +++||+++++.+++.|+++.+.+.+|.+.+
T Consensus       219 ~v~D~a~ai~~~~~~~~~----~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~  266 (322)
T d1r6da_         219 HTDDHCRGIALVLAGGRA----GEIYHIGGGLELTNRELTGILLDSLGADWS  266 (322)
T ss_dssp             EHHHHHHHHHHHHHHCCT----TCEEEECCCCEEEHHHHHHHHHHHHTCCGG
T ss_pred             EHHHHHHHHHHHHhCCCC----CCeeEEeecccchhHHHHHHHHHHhCCCcc
Confidence            999999999999987643    379999999999999999999999998754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=4.8e-31  Score=228.70  Aligned_cols=254  Identities=16%  Similarity=0.103  Sum_probs=189.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------------ccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------------IQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      .++|+|||||||||||++|+++|+ +.||+|++++|......            ...+.++++.+|+.|...+.......
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLL-KLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHH-HCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            356899999999999999999999 68999999997443210            12357899999999999988888888


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      +.|+|+++.+....+..++...++.|+.++.+++++|.+..  ..++++.|+..+|+..       ...|.+|+++..|.
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~--~~~~i~~SS~~vyg~~-------~~~~~~E~~~~~p~  163 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK--VQSFTYAASSSTYGDH-------PGLPKVEDTIGKPL  163 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CSEEEEEEEGGGGTTC-------CCSSBCTTCCCCCC
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcC--CceEEEcccceeeCCC-------CCCCccCCCCCCCC
Confidence            88888877665555566666789999999999999999873  4566666676688654       35678999998877


Q ss_pred             CccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhcc
Q 042242          174 SNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCL  246 (303)
Q Consensus       174 ~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~  246 (303)
                      ++   |+.+|.+.|.     .+.. ++++++||++|||++..........+..... +..  +.++.+.|++    .+..
T Consensus       164 ~~---Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~--g~~i~~~g~g----~~~r  234 (341)
T d1sb8a_         164 SP---YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQ--GDDVYINGDG----ETSR  234 (341)
T ss_dssp             SH---HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHH--TCCCEEESSS----CCEE
T ss_pred             Cc---chHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHc--CCceEEcCCC----CEEE
Confidence            77   9998888872     2222 9999999999999765422211111111111 222  4555554443    5667


Q ss_pred             cCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          247 DGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       247 ~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++++++|+|.++..++..+..  ..+++||++.+..+|+.|+++.|++.+|.+.
T Consensus       235 ~~i~v~D~~~a~~~~~~~~~~--~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~  286 (341)
T d1sb8a_         235 DFCYIENTVQANLLAATAGLD--ARNQVYNIAVGGRTSLNQLFFALRDGLAENG  286 (341)
T ss_dssp             CCEEHHHHHHHHHHHHTCCGG--GCSEEEEESCSCCEEHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeccchhhhhhhhcccc--ccceeeeecccccchHHHHHHHHHHHhcccc
Confidence            899999999998888766533  2247999999999999999999999988653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-32  Score=232.40  Aligned_cols=246  Identities=14%  Similarity=0.106  Sum_probs=167.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      .|||||||||||||++|+++|+ +.||+|++++|......      .....+.+...|+.     +.++.++|.|+|+|+
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~~d~VihlAa   74 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV-----EPLYIEVDQIYHLAS   74 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTT-----SCCCCCCSEEEECCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHH-----HHHHcCCCEEEECcc
Confidence            3799999999999999999999 68999999987433211      12233444445543     345667888999987


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVL  181 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~  181 (303)
                      ......+..++.+.+++|+.++.+++++|++...+   +++.|+..+|+.+....  ..+....|.+|..|.   +.|+.
T Consensus        75 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k---~I~~SS~~vy~~~~~~~--~~e~~~~~~~~~~p~---~~Y~~  146 (312)
T d2b69a1          75 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR---LLLASTSEVYGDPEVHP--QSEDYWGHVNPIGPR---ACYDE  146 (312)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCE---EEEEEEGGGGBSCSSSS--BCTTCCCBCCSSSTT---HHHHH
T ss_pred             cCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCc---EEEEEChheecCCCCCC--CCccccCCCCCCCCc---cHHHH
Confidence            65443333445568999999999999999987543   44455556776542210  012223333444444   44999


Q ss_pred             HHHHHHH-----hc--CCcceEEecCCceeecCCCCccc-hhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          182 EDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLYN-FLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       182 ~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      +|.+.|.     .+  + ++++++||++||||+...... ++..+ . ..+..  +.++.+.|++    .+..++++++|
T Consensus       147 sK~~~E~~~~~~~~~~~-~~~~~lR~~~vyGp~~~~~~~~~i~~~-i-~~~~~--g~~i~i~~~g----~~~r~~i~v~D  217 (312)
T d2b69a1         147 GKRVAETMCYAYMKQEG-VEVRVARIFNTFGPRMHMNDGRVVSNF-I-LQALQ--GEPLTVYGSG----SQTRAFQYVSD  217 (312)
T ss_dssp             HHHHHHHHHHHHHHHHC-CCEEEEEECCEECTTCCTTCCCHHHHH-H-HHHHH--TCCEEEESSS----CCEEECEEHHH
T ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEeeeEECCCCCCCCccHHHHH-H-HHHHc--CCCeEEeCCC----CeeEccEEHHH
Confidence            8888872     22  4 999999999999976543221 22221 1 11222  5566655544    55668899999


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ++++++.++....     +++||++++..+++.|+++.+++.+|.+.+
T Consensus       218 ~~~~~~~~~~~~~-----~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~  260 (312)
T d2b69a1         218 LVNGLVALMNSNV-----SSPVNLGNPEEHTILEFAQLIKNLVGSGSE  260 (312)
T ss_dssp             HHHHHHHHHTSSC-----CSCEEESCCCEEEHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHhhcc-----CCceEecCCcccchhhHHHHHHHHhCCCCc
Confidence            9999988876542     268999999999999999999999998765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.4e-30  Score=227.65  Aligned_cols=260  Identities=14%  Similarity=0.029  Sum_probs=183.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      ++|||||||||||||++|+++|+ +.||+|++++|+..... ......++..+|+.+.+.+.+.++++|.|+|+++....
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~   92 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLK-HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGG   92 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccccccc
Confidence            56799999999999999999999 68999999998655432 22345678889999999999999999999999765443


Q ss_pred             cCC-hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          106 SQF-ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       106 ~~~-~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ... ...+...+..|+.++.++++++++.+  +.++++.|+...|+...............|..+..|.++   |+.+|.
T Consensus        93 ~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~--vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~---Yg~sK~  167 (363)
T d2c5aa1          93 MGFIQSNHSVIMYNNTMISFNMIEAARING--IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA---FGLEKL  167 (363)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH---HHHHHH
T ss_pred             ccccccccccccccccchhhHHHHhHHhhC--ccccccccccccccccccccccccccccccCCcCCCCCH---HHHHHH
Confidence            221 23334478999999999999999873  456666666667765433221111223445556555666   999888


Q ss_pred             HHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHH
Q 042242          185 LKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQH  258 (303)
Q Consensus       185 ~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~  258 (303)
                      ..|.     .+.. ++++++||+++||+........................+....|++    .+..++++++|++.++
T Consensus       168 ~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g----~~~rd~i~v~D~~~~~  243 (363)
T d2c5aa1         168 ATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDG----LQTRSFTFIDECVEGV  243 (363)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCS----CCEECCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCC----CeEEEEeehhHHHHHH
Confidence            8772     2221 8999999999999754322111111111111122223444444443    4566788899999998


Q ss_pred             HHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          259 IWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       259 ~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +.++..+.     +++||+++++.+|+.|+++.+++.+|++.+
T Consensus       244 ~~~~~~~~-----~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~  281 (363)
T d2c5aa1         244 LRLTKSDF-----REPVNIGSDEMVSMNEMAEMVLSFEEKKLP  281 (363)
T ss_dssp             HHHHHSSC-----CSCEEECCCCCEEHHHHHHHHHHTTTCCCC
T ss_pred             HHHHhCCC-----CCeEEEecCCcccHHHHHHHHHHHhCCCCc
Confidence            88876542     268999999999999999999999998765

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.7e-30  Score=223.67  Aligned_cols=259  Identities=14%  Similarity=0.077  Sum_probs=178.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc--------cccCCCeEEEEecCCCHHHHHHHHh--ccCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT--------AIQSSSYCFISCDLLNPLDIKRKLT--LLEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~--------~~~~~~~~~~~~D~~~~~~l~~~~~--~~~~V~~   98 (303)
                      |||||||||||||++|++.|+ +.||+|++++|.....        .....+++++++|++|.+.+.++++  ++|.|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLL-QNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            479999999999999999999 6899999998733221        1234579999999999999999998  4677999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCC-CCCCCCccc
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC-PRVSKSNNF  177 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~-~~~p~~~~~  177 (303)
                      +|+......+..++.+.+++|+.++.+++++|++..  +.++++.|+..+|+...       ..+..|.+ ...|..+  
T Consensus        80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~--v~~~i~~Ss~~vy~~~~-------~~~~~e~~~~~~p~~~--  148 (338)
T d1udca_          80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNFIFSSSATVYGDQP-------KIPYVESFPTGTPQSP--  148 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEEEGGGGCSCC-------SSSBCTTSCCCCCSSH--
T ss_pred             CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhC--CCEEEecCcceEEcccc-------ccccccccccCCCcch--
Confidence            987654444445556789999999999999999873  45666666666775442       22233333 3344555  


Q ss_pred             hHHHHHHHHHH-----h-cCC-cceEEecCCceeecCCCCcc-----chhhHHHHH-HHHhhhCCCceeeCCchhhh--h
Q 042242          178 YYVLEDLLKEK-----L-AGK-VAWSVHRPGLLLGSSHRSLY-----NFLGCLCVY-GAVCKHLNLPFVFGGTREIW--E  242 (303)
Q Consensus       178 ~y~~~k~~~e~-----~-~~~-~~~~ilRp~~v~G~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~--~  242 (303)
                       |+.+|...|.     . ... ++++++||+++||+.+....     .....+..+ .........++.+.|+....  .
T Consensus       149 -Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g  227 (338)
T d1udca_         149 -YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG  227 (338)
T ss_dssp             -HHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTS
T ss_pred             -HHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCC
Confidence             8887777662     1 222 89999999999997543211     001111111 11222234455554432111  0


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      .+..++++++|++.+........... ..+++||+++++.+|+.|+++.+.+.+|.+.+
T Consensus       228 ~~~rd~i~v~D~~~~~~~~~~~~~~~-~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~  285 (338)
T d1udca_         228 TGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVN  285 (338)
T ss_dssp             SCEECEEEHHHHHHHHHHHHHHHTTC-CEEEEEEESCSSCEEHHHHHHHHHHHHTSCCC
T ss_pred             CceeeEEEEeehhhhccccccccccc-cCcceeeecCCCCCcHHHHHHHHHHHHCCCCc
Confidence            45667888999997776655433222 23478999999999999999999999998765

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.97  E-value=6.3e-31  Score=229.58  Aligned_cols=254  Identities=15%  Similarity=0.103  Sum_probs=180.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCccc-------cccCCCeEEEEecCCCHHHHHHHHhcc--CceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEIT-------AIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~-------~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~   98 (303)
                      |||||||||||||++|+++|+ +.|++ |+++++.....       ....++++++.+|++|...+..+++..  |.|+|
T Consensus         1 MkILItG~tGfIGs~l~~~L~-~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHII-KNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            489999999999999999999 57887 55566533221       123458999999999999999998864  56999


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC-------CccEEEEeecccccccccCCCccc---ccCCcCcCC
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-------ALKHVSLQTGMKHYVSLQGLPEEK---QVRFYDEEC  168 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-------~~~~~~~~s~~~~y~~~~~~~g~~---~~~~~~e~~  168 (303)
                      +|+......+..++.+.+++|+.++.+++++|++...       +..++++.|+..+|+......-..   ......|++
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~  159 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence            9876555455555666899999999999999987521       345777777777886543211100   111234555


Q ss_pred             CCCCCCccchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          169 PRVSKSNNFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                      +..|.++   |+.+|.+.|.     .  .+ ++++++||++||||+.... .++..+.  ..+..  +.++.+.|++   
T Consensus       160 ~~~p~s~---Yg~sK~~~E~~~~~~~~~~~-i~~~~lR~~~vyGp~~~~~-~~i~~~i--~~~~~--g~~~~v~g~g---  227 (361)
T d1kewa_         160 AYAPSSP---YSASKASSDHLVRAWRRTYG-LPTIVTNCSNNYGPYHFPE-KLIPLVI--LNALE--GKPLPIYGKG---  227 (361)
T ss_dssp             CCCCCSH---HHHHHHHHHHHHHHHHHHHC-CCEEEEEECEEESTTCCTT-SHHHHHH--HHHHH--TCCEEEETTS---
T ss_pred             CCCCCCH---HHHHHHHHHHHHHHHHHHhC-CCEEEEecCceECcCCCcC-cHHHHHH--HHHHc--CCCcEEeCCC---
Confidence            5555566   9999888883     1  23 9999999999999754321 1222211  11222  5566665554   


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                       .+..++++++|+|++++.++.++..    +++|||++++..++.|+++.+.+.++...
T Consensus       228 -~~~r~~i~v~D~a~ai~~~~~~~~~----~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~  281 (361)
T d1kewa_         228 -DQIRDWLYVEDHARALHMVVTEGKA----GETYNIGGHNEKKNLDVVFTICDLLDEIV  281 (361)
T ss_dssp             -CCEEEEEEHHHHHHHHHHHHHHCCT----TCEEEECCCCEEEHHHHHHHHHHHHHHHS
T ss_pred             -CeEEeCEEHHHHHHHHHHHHhcCCC----CCeEEECCCCCcchHHHHhHhhhhccccc
Confidence             4566788999999999999887643    37999999999999999999998775543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=4.3e-30  Score=220.69  Aligned_cols=250  Identities=12%  Similarity=0.047  Sum_probs=177.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhccC-c-eeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLLE-D-VTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~~-~-V~~~   99 (303)
                      |+|||||||||||++|+++|+ +.||+|++++|..+...       ...++++++.+|+.|...+.+.+.... + ++|+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll-~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLL-EKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            689999999999999999999 67999999999765422       123578999999999999999887766 3 5555


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchH
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYY  179 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y  179 (303)
                      +..........++.+.++.|+.++.+++++|++... ..++++.|+..+|+..       ...+.+|+++..|.++   |
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~-~~~~i~~Ss~~~~~~~-------~~~~~~E~~~~~p~~~---Y  148 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP-ETRFYQASTSEMFGLI-------QAERQDENTPFYPRSP---Y  148 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-TSEEEEEEEGGGGCSC-------SSSSBCTTSCCCCCSH---H
T ss_pred             cccccccccccchHHHHhhhhhchHHHHHHHHHhCC-CcccccccchhhcCcc-------cCCCCCCCCCccccCh---h
Confidence            444333333344556899999999999999998743 2344444455466433       2445678888777777   9


Q ss_pred             HHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHH-HHHhhhCCCceeeCCchhhhhhhcccCccHH
Q 042242          180 VLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVY-GAVCKHLNLPFVFGGTREIWEEYCLDGSDSR  252 (303)
Q Consensus       180 ~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  252 (303)
                      +.+|...|.     .... ++++++||+++|||...... ....+..+ ..+..+ +.+....|++    .++.++++++
T Consensus       149 ~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~-~~~~i~~~~~~~~~~-~~~~i~~g~g----~~~r~~i~v~  222 (321)
T d1rpna_         149 GVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEF-VTRKVTDAVARIKLG-KQQELRLGNV----DAKRDWGFAG  222 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHTT-SCSCEEESCT----TCEEECEEHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccc-cHHHHHHHHHHHHhC-CCCcEEECCC----CeEEccEEeH
Confidence            998888772     2222 99999999999996432211 11111111 222222 2233333433    5566789999


Q ss_pred             HHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          253 LVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       253 d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      |+|++++.++.++..     +.||+++++..|+.++++.+.+.+|.+.+
T Consensus       223 D~~~~~~~~~~~~~~-----~~~ni~~~~~~s~~~~~~~~~~~~~~~~~  266 (321)
T d1rpna_         223 DYVEAMWLMLQQDKA-----DDYVVATGVTTTVRDMCQIAFEHVGLDYR  266 (321)
T ss_dssp             HHHHHHHHHHHSSSC-----CCEEECCSCEEEHHHHHHHHHHTTTCCGG
T ss_pred             HHHHHHHHHHhcCCc-----CCceecccccceehhhhHHHHHHhCCCcc
Confidence            999999999887643     57999999999999999999999987643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=220.49  Aligned_cols=265  Identities=15%  Similarity=0.122  Sum_probs=183.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc--------cccCCCeEEEEecCCCHHHHHHHHhc--cCcee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT--------AIQSSSYCFISCDLLNPLDIKRKLTL--LEDVT   97 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~--------~~~~~~~~~~~~D~~~~~~l~~~~~~--~~~V~   97 (303)
                      +|.|||||||||||++|+++|+ +.|++|++++|.....        .....+++++++|++|.+.++.+++.  .|.|+
T Consensus         1 ~K~ILVTGatGfIG~~lv~~Ll-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           1 SKIVLVTGGAGYIGSHTVVELI-ENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHH-HCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            3689999999999999999999 6899999998743321        12346799999999999999999884  56799


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccc
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNF  177 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~  177 (303)
                      |+|+..........+.....+|+.++.+++++|++.  ++.++++.|+..+|+......   ...++.|+.+..|.++  
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~--~i~~~i~~SS~~vyg~~~~~~---~~~~~~e~~~~~p~~~--  152 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY--NVSKFVFSSSATVYGDATRFP---NMIPIPEECPLGPTNP--  152 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEGGGGCCGGGST---TCCSBCTTSCCCCCSH--
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhc--ccceEEeecceeeecCcccCC---CCCccccccCCCCCCh--
Confidence            998765544555555668899999999999999976  345666666666886543211   2456788888777777  


Q ss_pred             hHHHHHHHHHH-------hcCC-cceEEecCCceeecCCCCccc-----hhhHHH-HHHHHhhhCCCceeeCCchhhh--
Q 042242          178 YYVLEDLLKEK-------LAGK-VAWSVHRPGLLLGSSHRSLYN-----FLGCLC-VYGAVCKHLNLPFVFGGTREIW--  241 (303)
Q Consensus       178 ~y~~~k~~~e~-------~~~~-~~~~ilRp~~v~G~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~g~~~~~--  241 (303)
                       |+.+|.+.|.       .... ++++++||+++||+.+.....     ....+. ...........++.+.|.....  
T Consensus       153 -Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~  231 (347)
T d1z45a2         153 -YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD  231 (347)
T ss_dssp             -HHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CC
T ss_pred             -hHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccC
Confidence             9998888872       1223 899999999999975432111     001111 1122222234555555544332  


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCC---cCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDI---SSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~---~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ..+..+++++.+.+.+.+.++.....   ....+++||+++++++|+.|+++.+++.+|++.+
T Consensus       232 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~  294 (347)
T d1z45a2         232 GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLP  294 (347)
T ss_dssp             SSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCC
T ss_pred             CceeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCc
Confidence            03455677777878777766543211   0022478999999999999999999999998876

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=219.47  Aligned_cols=250  Identities=14%  Similarity=0.024  Sum_probs=183.0

Q ss_pred             CEE-EEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------------ccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           29 NVA-VIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------------IQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        29 ~~v-lVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------------~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      ||| ||||||||||++|+++|+ +.||+|++++|+++...             ....+++++.+|++|.+.+..++...+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll-~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   79 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLL-EKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEecCCcHHHHHHHHHHH-HCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence            578 999999999999999999 68999999999765321             112468899999999999999998776


Q ss_pred             --ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           95 --DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        95 --~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                        +|+|+++.+....+...+.+.+++|+.++.++++++++. ..+.+++++.|+..+|+.+       ...|++|+++..
T Consensus        80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~-------~~~~~~E~~~~~  152 (347)
T d1t2aa_          80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKV-------QEIPQKETTPFY  152 (347)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSC-------SSSSBCTTSCCC
T ss_pred             cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCC-------CCCCCCCCCCCC
Confidence              366776655545455555567899999999999999987 3445567777776677643       356789999988


Q ss_pred             CCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhh-hCCCceeeCCchhhhhhh
Q 042242          172 SKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCK-HLNLPFVFGGTREIWEEY  244 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~  244 (303)
                      |.++   |+.+|...|.     .+.. ++++++||+++||+.....  ..........+.. ....+....|++    .+
T Consensus       153 P~~~---Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~--~~~~~~~~~i~~~~~~~~~~~~~g~g----~~  223 (347)
T d1t2aa_         153 PRSP---YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGAN--FVTRKISRSVAKIYLGQLECFSLGNL----DA  223 (347)
T ss_dssp             CCSH---HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTT--SHHHHHHHHHHHHHHTSCSCEEESCT----TC
T ss_pred             CCCH---HHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCC--ccccccceeeehhhcCCcceeecCCC----cc
Confidence            7777   9999888882     2222 9999999999999643322  1111111111111 113334444443    55


Q ss_pred             cccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       245 ~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ..++++++|++.+++.++.....     +.|+++.....++.+....+...+|+..
T Consensus       224 ~r~~i~v~D~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (347)
T d1t2aa_         224 KRDWGHAKDYVEAMWLMLQNDEP-----EDFVIATGEVHSVREFVEKSFLHIGKTI  274 (347)
T ss_dssp             EECCEEHHHHHHHHHHHHHSSSC-----CCEEECCSCCEEHHHHHHHHHHHTTCCE
T ss_pred             eeeeeEecHHHHHHHHHhhcCCC-----ccceeccccccccchhhhhhhhhhccee
Confidence            67889999999999998887643     5699999999999999999998888754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.5e-29  Score=217.79  Aligned_cols=253  Identities=14%  Similarity=0.197  Sum_probs=177.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHH-HHHhccCceeEEeeccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIK-RKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~-~~~~~~~~V~~~~~~~~  104 (303)
                      |||||||||||||++|+++|+ +.| ++|+++++......  ...++++++++|+++.+.+. ..++++|.|+|+|+.+.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll-~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~~   79 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLL-REDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIAT   79 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccccc
Confidence            489999999999999999999 455 68999998765432  34578999999998876554 47788889999988766


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC----CCCccchHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV----SKSNNFYYV  180 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~----p~~~~~~y~  180 (303)
                      .......+...++.|+.++.++++++.+...+.   .+.++..+|+.....       ...|..+..    +..|...|+
T Consensus        80 ~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~---~~~ss~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~~~Y~  149 (342)
T d2blla1          80 PIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI---IFPSTSEVYGMCSDK-------YFDEDHSNLIVGPVNKPRWIYS  149 (342)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE---EEECCGGGGBTCCCS-------SBCTTTCCCBCCCTTCGGGHHH
T ss_pred             ccccccCCccccccccccccccccccccccccc---ccccccccccccccc-------ccccccccccccccCCCcchhh
Confidence            555555555689999999999999999875433   233455577554321       222222111    134456699


Q ss_pred             HHHHHHHH-----hc--CCcceEEecCCceeecCCCCcc----chhhHHHHHH-HHhhhCCCceeeCCchhhhhhhcccC
Q 042242          181 LEDLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLY----NFLGCLCVYG-AVCKHLNLPFVFGGTREIWEEYCLDG  248 (303)
Q Consensus       181 ~~k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (303)
                      .+|.+.|.     .+  + ++++++||+.+||+......    ........+. .+..  +.++.+.|++    .+..++
T Consensus       150 ~sK~~~E~~~~~~~~~~~-~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~g----~~~r~~  222 (342)
T d2blla1         150 VSKQLLDRVIWAYGEKEG-LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE--GSPIKLIDGG----KQKRCF  222 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHC-CCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHH--TCCEEEGGGS----CCEEEC
T ss_pred             hcccchhhhhhhhhcccC-ceeEEeeccccccccccccccccccccccchHHHHHHHh--CCCccccCCC----Ceeeee
Confidence            98888873     22  4 89999999999997544221    1111111111 1222  5666666654    456788


Q ss_pred             ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC-CccHHhhHHHHHHHhcccC
Q 042242          249 SDSRLVAEQHIWVATNDDISSTKGQAFNAINGP-RFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       249 ~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~-~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++++|+|++++.++..+... ..|++||+++++ .+|+.|+++.+++.+|+..
T Consensus       223 i~v~D~~~a~~~~~~~~~~~-~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~  274 (342)
T d2blla1         223 TDIRDGIEALYRIIENAGNR-CDGEIINIGNPENEASIEELGEMLLASFEKHP  274 (342)
T ss_dssp             EEHHHHHHHHHHHHHCGGGT-TTTEEEEECCTTSEEEHHHHHHHHHHHHHTCT
T ss_pred             cccccccceeeeehhhcccc-CCCeEEEEecccchhHHHHHHHHHHHHhCCCc
Confidence            99999999999998875322 235899998765 5899999999999998654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-29  Score=217.58  Aligned_cols=262  Identities=14%  Similarity=0.064  Sum_probs=178.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc--------------cccCCCeEEEEecCCCHHHHHHHHhc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT--------------AIQSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~--------------~~~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      |.|||||||||||||++|+++|+ +.||+|++++|.....              .....++.++++|++|.+.+.+.+..
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll-~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELL-EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHH-HTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHHHH-HCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccc
Confidence            67899999999999999999999 6899999998632221              01245789999999999999999988


Q ss_pred             cC--ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           93 LE--DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        93 ~~--~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .+  +|+|+|+......+..++.+.++.|+.++.+++++++...  +.++++.++...|+....      .....+....
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~--v~~~i~~ss~~~~~~~~~------~~~~~~~~~~  151 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG--VKNLVFSSSATVYGNPQY------LPLDEAHPTG  151 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCEEEEEEEGGGGCSCSS------SSBCTTSCCC
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcC--cccccccccceeeecccc------cccccccccc
Confidence            77  3888887655555555566789999999999999998763  445666666556644422      1112222223


Q ss_pred             CCCCccchHHHHHHHHH-----Hh-cCC-cceEEecCCceeecCCCCcc-----chhhH-HHHHHHHhhhCCCceeeCCc
Q 042242          171 VSKSNNFYYVLEDLLKE-----KL-AGK-VAWSVHRPGLLLGSSHRSLY-----NFLGC-LCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e-----~~-~~~-~~~~ilRp~~v~G~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~g~  237 (303)
                      .|.+|   |+.+|...|     +. ... ++++++||+.+||+......     ..... +..+.......+.++.+.|.
T Consensus       152 ~~~~~---Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~  228 (346)
T d1ek6a_         152 GCTNP---YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGN  228 (346)
T ss_dssp             CCSSH---HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECS
T ss_pred             ccCCh---HHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCC
Confidence            33455   888777766     22 222 99999999999997532110     00011 11112222223445544333


Q ss_pred             hhhh--hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          238 REIW--EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       238 ~~~~--~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      ....  ..+..++++++|+|.++..++...... ..+++||+++++.+|+.|+++.+++.+|.+.+
T Consensus       229 ~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~-~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~  293 (346)
T d1ek6a_         229 DYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQ-CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIP  293 (346)
T ss_dssp             CSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTT-CCEEEEEECCSCCEEHHHHHHHHHHHHCSCCC
T ss_pred             cccCCCCCeeEeEEEEEeccchhhhhccccccc-cCceEEEeCCCCcccHHHHHHHHHHHhCCCCC
Confidence            2111  045668899999998887765443322 23479999999999999999999999998765

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.97  E-value=1.1e-29  Score=220.47  Aligned_cols=253  Identities=13%  Similarity=0.028  Sum_probs=177.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc-----c---cccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI-----T---AIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~-----~---~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +|+|||||||||||++|+++|+ +.|++|.++.++...     .   .....+++++.+|+.|.+.+..++...+.|+|+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~-~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVY-NNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHH-HHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHH-HCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            4799999999999999999999 567776555543211     1   123468999999999999999999998889999


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCC-----cccccCCcCcCCCCCCCC
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLP-----EEKQVRFYDEECPRVSKS  174 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~-----g~~~~~~~~e~~~~~p~~  174 (303)
                      |+......+..++.+.++.|+.++.++++++.....++++++   +..+|+......     .........|+++..|.+
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~s---s~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s  157 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS---TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSS  157 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEE---EGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCS
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhccccccccccc---cceEecccCccccccccccCcccccccCCCCCCCC
Confidence            876655544455556899999999999999998865444443   334674321100     000123455666655555


Q ss_pred             ccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHH-HHhhhCCCceeeCCchhhhhhhccc
Q 042242          175 NNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYG-AVCKHLNLPFVFGGTREIWEEYCLD  247 (303)
Q Consensus       175 ~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~  247 (303)
                      +   |+.+|.+.|.     .+.. ++++++||++||||......    .+..+. .+..  +.++.+.|.+    .+..+
T Consensus       158 ~---Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~----~~~~~i~~~~~--~~~~~i~~~g----~~~r~  224 (346)
T d1oc2a_         158 P---YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEK----FIPRQITNILA--GIKPKLYGEG----KNVRD  224 (346)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTS----HHHHHHHHHHH--TCCCEEETTS----CCEEE
T ss_pred             H---HHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccc----hhHHHHHHHHc--CCceeEeCCC----Ccccc
Confidence            5   9998888772     2222 99999999999996433221    111111 1222  3444444433    56677


Q ss_pred             CccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          248 GSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       248 ~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +++++|+|++++.++..+..    ++.||+++++..++.++++.+.+.+|++..
T Consensus       225 ~i~v~D~a~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  274 (346)
T d1oc2a_         225 WIHTNDHSTGVWAILTKGRM----GETYLIGADGEKNNKEVLELILEKMGQPKD  274 (346)
T ss_dssp             CEEHHHHHHHHHHHHHHCCT----TCEEEECCSCEEEHHHHHHHHHHHTTCCTT
T ss_pred             ccchhhHHHHHHHHHhhccc----CccccccccccccchHHHHHHHHHhCCCCc
Confidence            89999999999888777643    368999999999999999999999988653

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=3.7e-28  Score=209.99  Aligned_cols=250  Identities=12%  Similarity=0.029  Sum_probs=177.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------------ccCCCeEEEEecCCCHHHHHHHHhcc-
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------------IQSSSYCFISCDLLNPLDIKRKLTLL-   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------------~~~~~~~~~~~D~~~~~~l~~~~~~~-   93 (303)
                      .|++||||||||||++|+++|+ +.||+|++++|..+...             .....++++.+|+.+.+.+...++.. 
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~   79 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLL-GKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK   79 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEeCCccHHHHHHHHHHH-HCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence            3799999999999999999999 68999999999654210             11345778999999999999988765 


Q ss_pred             -CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc---CCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           94 -EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA---KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        94 -~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                       |.|+|+|+......+...+...+..|+.++.+++++++...   .....+++.++...|+..        ..+.+|+++
T Consensus        80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~--------~~~~~E~~~  151 (339)
T d1n7ha_          80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST--------PPPQSETTP  151 (339)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS--------CSSBCTTSC
T ss_pred             cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC--------CCCCCCCCC
Confidence             56999987755555555666689999999999999998651   222233333333333222        456789888


Q ss_pred             CCCCCccchHHHHHHHHHH-----hcCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhh
Q 042242          170 RVSKSNNFYYVLEDLLKEK-----LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e~-----~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~  242 (303)
                      ..|.++   |+.+|...|.     .+.. ++++++||++||||...... ....+..... .... ..+..+.|+.    
T Consensus       152 ~~p~~~---Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~-~~~~i~~~~~~~~~~-~~~~~~~g~~----  222 (339)
T d1n7ha_         152 FHPRSP---YAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF-VTRKITRALGRIKVG-LQTKLFLGNL----  222 (339)
T ss_dssp             CCCCSH---HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHHT-SCCCEEESCT----
T ss_pred             CCCcch---hhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCC-CcchhhHHHHHHhcC-CCCeEEeCCC----
Confidence            877777   9998888872     2222 99999999999997533211 1111111111 2222 2333444443    


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      .+..++++++|+|.+++.++.++..     ..+++..+...++.++++.+.+.+|...
T Consensus       223 ~~~rd~~~v~D~a~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~  275 (339)
T d1n7ha_         223 QASRDWGFAGDYVEAMWLMLQQEKP-----DDYVVATEEGHTVEEFLDVSFGYLGLNW  275 (339)
T ss_dssp             TCEEECEEHHHHHHHHHHHHTSSSC-----CEEEECCSCEEEHHHHHHHHHHHTTCCG
T ss_pred             CccccceeeehHHHHHHHHHhcCCC-----Cccccccccccccchhhhhhhhhhhccc
Confidence            5667889999999999998887643     4577888888999999999999998764

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=6.3e-28  Score=212.17  Aligned_cols=267  Identities=15%  Similarity=0.090  Sum_probs=177.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc---c---------------------cccCCCeEEEEecCCCHH
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI---T---------------------AIQSSSYCFISCDLLNPL   84 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~---~---------------------~~~~~~~~~~~~D~~~~~   84 (303)
                      |||||||||||||++|+++|+++.||+|+++++-...   .                     ......+.++.+|++|.+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~   82 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED   82 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence            5899999999999999999996689999999851100   0                     011235788999999999


Q ss_pred             HHHHHHhc---cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           85 DIKRKLTL---LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        85 ~l~~~~~~---~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                      .+.++++.   +|.|+|+|+..........+...++.|+.++.+++++++....  ..+...++...|............
T Consensus        83 ~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKC--DKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC--CEEEEEEEGGGTBSCCC-----CC
T ss_pred             HhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCC--cccccccccccccccccccccccc
Confidence            99999874   4679999876555444444555789999999999999998743  333333344455443322222235


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCccc--------hhhHHH-HHHH-H
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYN--------FLGCLC-VYGA-V  224 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~-~~~~-~  224 (303)
                      .+..|+.+..|.++   |+.+|...|.     .  .+ ++++++||+++||++......        ..+.+. .... .
T Consensus       161 ~~~~e~~~~~p~~~---Y~~sK~~~e~~~~~~~~~~g-l~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~  236 (383)
T d1gy8a_         161 EPIDINAKKSPESP---YGESKLIAERMIRDCAEAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDI  236 (383)
T ss_dssp             CCBCTTSCCBCSSH---HHHHHHHHHHHHHHHHHHHC-CEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCH---HHhhHhHHHHHHHHHHHHhC-CCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhc
Confidence            56778888777777   9998887772     2  24 999999999999976542111        111110 0000 0


Q ss_pred             h----------hhCCCceeeCCchhhh--hhhcccCccHHHHHHHHHHHhcCcCC-----cCCCCceEEeecCCCccHHh
Q 042242          225 C----------KHLNLPFVFGGTREIW--EEYCLDGSDSRLVAEQHIWVATNDDI-----SSTKGQAFNAINGPRFTWKE  287 (303)
Q Consensus       225 ~----------~~~~~~~~~~g~~~~~--~~~~~~~~~~~d~a~a~~~~~~~~~~-----~~~~g~~yni~~~~~~s~~e  287 (303)
                      .          ...+.++.+.|.....  ..+..++++++|+|++++.++.....     .+..+++|||++++++|+.|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~e  316 (383)
T d1gy8a_         237 APDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVRE  316 (383)
T ss_dssp             SCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHH
T ss_pred             cccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHH
Confidence            0          0013333333321110  04556789999999999887754211     11334799999999999999


Q ss_pred             hHHHHHHHhcccCC
Q 042242          288 IWPSIGKKFGVKVP  301 (303)
Q Consensus       288 ~~~~i~~~~g~~~~  301 (303)
                      +++.+.+.+|.+.+
T Consensus       317 l~~~i~~~~~~~~~  330 (383)
T d1gy8a_         317 VIEVARKTTGHPIP  330 (383)
T ss_dssp             HHHHHHHHHCCCCC
T ss_pred             HHHHHHHHhCCCCc
Confidence            99999999998765

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=2.1e-26  Score=203.03  Aligned_cols=254  Identities=16%  Similarity=0.069  Sum_probs=167.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC---------------Cccc---------cccCCCeEEEEecCCCH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARK---------------PEIT---------AIQSSSYCFISCDLLNP   83 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~---------------~~~~---------~~~~~~~~~~~~D~~~~   83 (303)
                      +|||||||||||||++|+++|+ +.||+|++++.-               +...         .....+++++++|++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll-~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLS-KKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence            4799999999999999999999 689999999721               0000         01235789999999999


Q ss_pred             HHHHHHHhcc--CceeEEeeccccc---CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCC---
Q 042242           84 LDIKRKLTLL--EDVTHIFWVTWAS---QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGL---  155 (303)
Q Consensus        84 ~~l~~~~~~~--~~V~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~---  155 (303)
                      +.+.+++++.  |.|+|+|+.....   .....+.+.++.|+.++.+++++|++.... .++++.|+..+|+.....   
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~~i~~ss~~~~~~~~~~~~~  158 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEE-CHLVKLGTMGEYGTPNIDIEE  158 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEEECCGGGGCCCSSCBCS
T ss_pred             HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccc-cceeecccccccccccccccc
Confidence            9999999876  5699998754322   233445567899999999999999987433 344555555566443211   


Q ss_pred             -CcccccCCc--CcCCCCCCCCccchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCccc------------
Q 042242          156 -PEEKQVRFY--DEECPRVSKSNNFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSLYN------------  213 (303)
Q Consensus       156 -~g~~~~~~~--~e~~~~~p~~~~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~~~------------  213 (303)
                       +........  .+..+..|.++   |+.+|.+.|.     .  .+ ++++++||+++||+.......            
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~---Y~~sK~~aE~~~~~~~~~~~-l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~  234 (393)
T d1i24a_         159 GYITITHNGRTDTLPYPKQASSF---YHLSKVHDSHNIAFTCKAWG-IRATDLNQGVVYGVKTDETEMHEELRNRLDYDA  234 (393)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHHC-CEEEEEEECEEECSCCTTGGGSGGGCCCCCCST
T ss_pred             ccccccccccccccccccccccH---HHHHhhhhcccccccccccc-eeeeecccccccCCCcccccccccccccccccc
Confidence             100001111  11223333444   9999888872     2  24 999999999999975432100            


Q ss_pred             -hhhHHHHHHH-HhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEe--ecCCCccHHhhH
Q 042242          214 -FLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNA--INGPRFTWKEIW  289 (303)
Q Consensus       214 -~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni--~~~~~~s~~e~~  289 (303)
                       +...+..+.. ..  .+.++.+.|.+    .+..++++++|++.+++.++.++...+   . |++  .+++.+|+.|++
T Consensus       235 ~~~~~i~~~~~~~~--~~~~~~i~g~~----~~~rd~v~v~D~~~a~~~~~~~~~~~g---~-~~~~~~~~~~~si~el~  304 (393)
T d1i24a_         235 VFGTALNRFCVQAA--VGHPLTVYGKG----GQTRGYLDIRDTVQCVEIAIANPAKAG---E-FRVFNQFTEQFSVNELA  304 (393)
T ss_dssp             TTCCHHHHHHHHHH--HTCCEEEETTS----CCEEEEEEHHHHHHHHHHHHHSCCCTT---C-EEEEEECSEEEEHHHHH
T ss_pred             ccccchhhhhHHhh--cCCeeEEeeec----ccccccccccchHHHHHHHHHhhcccc---e-eeeecCCCCeeEHHHHH
Confidence             0001112221 22  25666666655    455688899999999999988775543   3 433  345678999999


Q ss_pred             HHHHHHhc
Q 042242          290 PSIGKKFG  297 (303)
Q Consensus       290 ~~i~~~~g  297 (303)
                      +.|.+..+
T Consensus       305 ~~i~~~~~  312 (393)
T d1i24a_         305 SLVTKAGS  312 (393)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.95  E-value=4.5e-27  Score=197.74  Aligned_cols=224  Identities=14%  Similarity=0.073  Sum_probs=165.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeeccccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWAS  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~~  106 (303)
                      |||||||||||||++|+++|. +.||+|++++|++              +|+.|.+.+.+++++.  |.|+|+++.....
T Consensus         2 MKIlItGasGfiG~~l~~~L~-~~g~~Vi~~~r~~--------------~D~~d~~~~~~~l~~~~~d~vih~a~~~~~~   66 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLK-GKNVEVIPTDVQD--------------LDITNVLAVNKFFNEKKPNVVINCAAHTAVD   66 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHT-TSSEEEEEECTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEEeechh--------------ccCCCHHHHHHHHHHcCCCEEEeeccccccc
Confidence            579999999999999999998 7899999999874              5899999999999865  4599987765544


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .....+......|+.....+.+.+.....   .++..++..+|+..       ...+..|.++..|...   |+.++...
T Consensus        67 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~~~ss~~v~~~~-------~~~~~~e~~~~~~~~~---~~~~k~~~  133 (281)
T d1vl0a_          67 KCEEQYDLAYKINAIGPKNLAAAAYSVGA---EIVQISTDYVFDGE-------AKEPITEFDEVNPQSA---YGKTKLEG  133 (281)
T ss_dssp             HHHHCHHHHHHHHTHHHHHHHHHHHHHTC---EEEEEEEGGGSCSC-------CSSCBCTTSCCCCCSH---HHHHHHHH
T ss_pred             cccccchhhcccccccccccccccccccc---cccccccceeeecc-------ccccccccccccchhh---hhhhhhHH
Confidence            55555555788899999988888876532   33333444455443       2456778877665555   77777776


Q ss_pred             HHh---cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc
Q 042242          187 EKL---AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT  263 (303)
Q Consensus       187 e~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~  263 (303)
                      +..   .+ .+++++||+++||++.+..    ..+  ...+.+  +.+....+      ..+.++++++|++.++..+++
T Consensus       134 e~~~~~~~-~~~~i~R~~~vyG~~~~~~----~~~--~~~~~~--~~~~~~~~------~~~~~~i~v~D~~~~~~~~~~  198 (281)
T d1vl0a_         134 ENFVKALN-PKYYIVRTAWLYGDGNNFV----KTM--INLGKT--HDELKVVH------DQVGTPTSTVDLARVVLKVID  198 (281)
T ss_dssp             HHHHHHHC-SSEEEEEECSEESSSSCHH----HHH--HHHHHH--CSEEEEES------SCEECCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCccccceeEEeCCCcccc----cch--hhhhcc--CCceeecC------Cceeccchhhhhhhhhhhhhh
Confidence            632   23 8999999999999754321    111  111222  33444444      455678999999999999987


Q ss_pred             CcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          264 NDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       264 ~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      ++..     ++||+++++.+|+.|+++.+++.+|++.
T Consensus       199 ~~~~-----g~~~~~~~~~~s~~e~~~~i~~~~g~~~  230 (281)
T d1vl0a_         199 EKNY-----GTFHCTCKGICSWYDFAVEIFRLTGIDV  230 (281)
T ss_dssp             HTCC-----EEEECCCBSCEEHHHHHHHHHHHHCCCC
T ss_pred             hccc-----CceeEeCCCccchHHHHHHHHHHhCCCc
Confidence            7642     5899999999999999999999999875

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.94  E-value=5.7e-26  Score=195.77  Aligned_cols=259  Identities=17%  Similarity=0.154  Sum_probs=172.5

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEe
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIF  100 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~  100 (303)
                      ||||||||||||++|+++|+ +.||+|+++++-.....       ....+++++.+|++|.+.+.++++++  |.|+|+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll-~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFAL-SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHH-HCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            79999999999999999999 68999999986322211       23468999999999999999999887  5699998


Q ss_pred             ecccccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCccc---------ccCCcCcCCCC
Q 042242          101 WVTWASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEK---------QVRFYDEECPR  170 (303)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~---------~~~~~~e~~~~  170 (303)
                      +.........++.+.+++|+.|+.++++++.+. ..+++.+++  +...|+......-..         ......+..+.
T Consensus        81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T d1orra_          81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS--TNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL  158 (338)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE--EGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred             ccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc--cccccccccccccccccccccccccccCcccCCcc
Confidence            775554445555668999999999999999987 333333333  333333221110000         01112222232


Q ss_pred             CCCCccchHHHHHHHHHH-----h--cCCcceEEecCCceeecCCCCc--cchhhHHHHHH-HHhhhCCCceeeCCchhh
Q 042242          171 VSKSNNFYYVLEDLLKEK-----L--AGKVAWSVHRPGLLLGSSHRSL--YNFLGCLCVYG-AVCKHLNLPFVFGGTREI  240 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e~-----~--~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~  240 (303)
                      .   |...|+..+...+.     .  .+ +...++|++.+|++.....  ......+.... ......+.++.+.|++  
T Consensus       159 ~---~~~~y~~~k~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--  232 (338)
T d1orra_         159 D---FHSPYGCSKGAADQYMLDYARIFG-LNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNG--  232 (338)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSS--
T ss_pred             c---cccccccccchhhhhhhhhhhccC-cccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCC--
Confidence            2   33447777766652     2  23 8889999999997543211  11112222111 1233346677776654  


Q ss_pred             hhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeec--CCCccHHhhHHHHHHHhcccCC
Q 042242          241 WEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAIN--GPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       241 ~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~--~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                        .+..++++++|++++++.++..+...  .+++||+..  +..+++.|+++.+.+.+|.+.+
T Consensus       233 --~~~r~~~~v~D~~~~~~~~l~~~~~~--~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~  291 (338)
T d1orra_         233 --KQVRDVLHAEDMISLYFTALANVSKI--RGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMR  291 (338)
T ss_dssp             --CCEEECEEHHHHHHHHHHHHHTHHHH--TTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCC
T ss_pred             --ceeEeeecccchhhHHHHHHhccccc--cCccccccccccccccHHHHHHHHHHHHCCCce
Confidence              45577889999999999988765432  247899854  5578999999999999998754

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.94  E-value=1.6e-26  Score=200.06  Aligned_cols=250  Identities=14%  Similarity=0.080  Sum_probs=163.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +|+|||||||||||++|+++|+ +.||+|+++.|+..+..         .......++.+|+.|.+.+.+++.+++.|+|
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll-~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLL-EHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            6899999999999999999999 68999999999764431         1122344577999999999999999988889


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccC-CCccc-ccC-----------CcC
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQG-LPEEK-QVR-----------FYD  165 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~-~~g~~-~~~-----------~~~  165 (303)
                      +++.........   +.++.|+.++.+++++|.+. ..+.++++.|+...+..... ..+.. .+.           +..
T Consensus        90 ~a~~~~~~~~~~---~~~~~nv~gt~~ll~~~~~~-~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  165 (342)
T d1y1pa1          90 IASVVSFSNKYD---EVVTPAIGGTLNALRAAAAT-PSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP  165 (342)
T ss_dssp             CCCCCSCCSCHH---HHHHHHHHHHHHHHHHHHTC-TTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred             hccccccccccc---ccccchhhhHHHHHHhhhcc-cccccccccccceeeccCCCCCCCcccccccccccccccccccc
Confidence            877644333322   36889999999999999875 23556666655333222111 00000 000           122


Q ss_pred             cCCCCCCCCccchHHHHHHHHHH-------hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCc
Q 042242          166 EECPRVSKSNNFYYVLEDLLKEK-------LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGT  237 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e~-------~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (303)
                      |..+..|   .+.|+.+|...|.       ..+. ++++++||+.+||+.................+.++ .......+ 
T Consensus       166 e~~~~~p---~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g-~~~~~~~~-  240 (342)
T d1y1pa1         166 ESDPQKS---LWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNG-EVSPALAL-  240 (342)
T ss_dssp             TTSTTHH---HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTT-CCCHHHHT-
T ss_pred             ccCCCCC---cCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcC-CcCcccCC-
Confidence            3333333   3348998887763       1233 88899999999997432211111111111122221 11222233 


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHh
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKF  296 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~  296 (303)
                           ....+++|++|+|++++.++.++...    +.||++.++.+|++|+++.|++.+
T Consensus       241 -----~~~~~~v~v~Dva~~~i~~l~~~~~~----g~~~~~~~~~~t~~eia~~i~k~~  290 (342)
T d1y1pa1         241 -----MPPQYYVSAVDIGLLHLGCLVLPQIE----RRRVYGTAGTFDWNTVLATFRKLY  290 (342)
T ss_dssp             -----CCSEEEEEHHHHHHHHHHHHHCTTCC----SCEEEECCEEECHHHHHHHHHHHC
T ss_pred             -----ccceeeeeHHHHHHHHHHhhcCcccc----ceEEEEcCCceEHHHHHHHHHHHc
Confidence                 23345789999999999998887654    357788889999999999999987

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.3e-25  Score=189.49  Aligned_cols=245  Identities=16%  Similarity=0.061  Sum_probs=170.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeecccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWA  105 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~  105 (303)
                      .|||||||||||||++|+++|+ +.|+.|++++++..             +|+.+.+.+.+.++..  |.|+|++.....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~-~~g~~vi~~~~~~~-------------~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~   67 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLE-QRGDVELVLRTRDE-------------LNLLDSRAVHDFFASERIDQVYLAAAKVGG   67 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHT-TCTTEEEECCCTTT-------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-HCcCEEEEecCchh-------------ccccCHHHHHHHHhhcCCCEEEEcchhccc
Confidence            4799999999999999999999 68999887765532             6899999999988764  457777644322


Q ss_pred             -cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCC--CCCccchHHHH
Q 042242          106 -SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV--SKSNNFYYVLE  182 (303)
Q Consensus       106 -~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~--p~~~~~~y~~~  182 (303)
                       ........+.++.|+.++.+++++|++.  .+.++++.|+..+|+...       ..|++|+.+..  |..++..|+.+
T Consensus        68 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--~v~~~i~~SS~~vyg~~~-------~~~~~E~~~~~~~~~~~~~~Y~~s  138 (315)
T d1e6ua_          68 IVANNTYPADFIYQNMMIESNIIHAAHQN--DVNKLLFLGSSCIYPKLA-------KQPMAESELLQGTLEPTNEPYAIA  138 (315)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECCGGGSCTTC-------CSSBCGGGTTSSCCCGGGHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECCceEcCCCC-------CCCccCCccccCCCCCCCCHHHHH
Confidence             1223344457899999999999999887  355677777777886542       34566665543  12223449998


Q ss_pred             HHHHHH-----hc--CCcceEEecCCceeecCCCCcc---chhhHHHHHHH-HhhhCCCceeeCCchhhhhhhcccCccH
Q 042242          183 DLLKEK-----LA--GKVAWSVHRPGLLLGSSHRSLY---NFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCLDGSDS  251 (303)
Q Consensus       183 k~~~e~-----~~--~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~  251 (303)
                      |...|.     .+  + ++++++||++|||++.....   .....+..... .....+.++...|..    .+..+++++
T Consensus       139 K~~~E~~~~~~~~~~g-l~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g----~~~~~~~~v  213 (315)
T d1e6ua_         139 KIAGIKLCESYNRQYG-RDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSG----TPMREFLHV  213 (315)
T ss_dssp             HHHHHHHHHHHHHHHC-CEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCS----CCEECEEEH
T ss_pred             HHHHHHHHHHHHHHhC-CCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCC----ceEEEEEEe
Confidence            888872     22  4 99999999999997654221   11222222222 222235566665554    455678899


Q ss_pred             HHHHHHHHHHhcCcCCc-----CCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          252 RLVAEQHIWVATNDDIS-----STKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       252 ~d~a~a~~~~~~~~~~~-----~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +|++.++...+......     ......+|++.+...++.++++.+.+.+|.+.
T Consensus       214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~  267 (315)
T d1e6ua_         214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG  267 (315)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCS
T ss_pred             ehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCc
Confidence            99999998887554311     01235799999999999999999999998765

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.94  E-value=2.3e-25  Score=193.57  Aligned_cols=254  Identities=15%  Similarity=0.042  Sum_probs=173.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccC--ceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLE--DVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~--~V~~   98 (303)
                      ++|||||||||||||++|++.|+ +.||+|++++|+.++..      ...++++++.+|++|.+.+.++++..+  .|+|
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll-~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~   85 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQ-TMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   85 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence            46999999999999999999999 68999999999876543      124579999999999999999998765  4888


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      +++......+...+...+.+|+.++.+++++++...... .+++.++...|....      ...+..|+.+..|..+   
T Consensus        86 ~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~-~~~~~s~~~~~~~~~------~~~~~~~~~~~~p~~~---  155 (356)
T d1rkxa_          86 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVK-AVVNITSDKCYDNKE------WIWGYRENEAMGGYDP---  155 (356)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCC-EEEEECCGGGBCCCC------SSSCBCTTSCBCCSSH---
T ss_pred             hhccccccccccCCccccccccccchhhhhhhhcccccc-ccccccccccccccc------cccccccccccCCCCc---
Confidence            876655544555566689999999999999999874333 333333333332222      2445667777666666   


Q ss_pred             HHHHHHHHHH----------------hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          179 YVLEDLLKEK----------------LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       179 y~~~k~~~e~----------------~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      |+..|...+.                ..+ +.++++||+++||++......+...+   ..... .+.+.. .+..    
T Consensus       156 y~~~k~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~vyGp~~~~~~~~i~~~---~~~~~-~~~~~~-~~~~----  225 (356)
T d1rkxa_         156 YSNSKGCAELVTSSYRNSFFNPANYGQHG-TAVATVRAGNVIGGGDWALDRIVPDI---LRAFE-QSQPVI-IRNP----  225 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCGGGHHHHC-CEEEEEECCCEECTTCCCSSCHHHHH---HHHHH-TTCCEE-CSCT----
T ss_pred             cccccccchhhhhHHhhhcccchhccccC-ceEEeccCCCeeCCCcchhhHHHHHH---HHHHh-CCCceE-Eeec----
Confidence            7776655541                112 78999999999997543222222221   11111 233433 3333    


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcC---CCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISS---TKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~---~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      .+..++++++|++.+++.++..+...+   ..+..++.......++.++++.+.+.+|.+.+
T Consensus       226 ~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  287 (356)
T d1rkxa_         226 HAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGAS  287 (356)
T ss_dssp             TCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCC
T ss_pred             cccccccccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCcc
Confidence            455677889999999888876643221   01122333456689999999999999987654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.9e-23  Score=165.00  Aligned_cols=199  Identities=12%  Similarity=0.051  Sum_probs=135.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeeccc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~  104 (303)
                      |.+|||+||||||+||++++++|+ ..||+|++++|++.+.. ....+++++.+|+.|.+++.++++++|.|+|+++...
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll-~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~   79 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN   79 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccCC
Confidence            346899999999999999999999 68999999999987754 3456799999999999999999999998888865422


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      .. .      ..+.+..++.++++++++.+  +.++++.|+...|..+..                .|.. ...|...+.
T Consensus        80 ~~-~------~~~~~~~~~~~l~~aa~~~~--v~r~i~~ss~~~~~~~~~----------------~~~~-~~~~~~~~~  133 (205)
T d1hdoa_          80 DL-S------PTTVMSEGARNIVAAMKAHG--VDKVVACTSAFLLWDPTK----------------VPPR-LQAVTDDHI  133 (205)
T ss_dssp             CC-S------CCCHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSCTTC----------------SCGG-GHHHHHHHH
T ss_pred             ch-h------hhhhhHHHHHHHHHHHHhcC--CCeEEEEeeeeccCCCcc----------------cccc-ccccchHHH
Confidence            11 1      12456678999999999863  456666665444422110                0000 011333333


Q ss_pred             HHH-H--hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          185 LKE-K--LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       185 ~~e-~--~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      ..+ .  ..+ ++|+++||+.+++......                  ..+...+      .....+++.+|+|++++.+
T Consensus       134 ~~e~~l~~~~-~~~tiirp~~~~~~~~~~~------------------~~~~~~~------~~~~~~i~~~DvA~~~~~~  188 (205)
T d1hdoa_         134 RMHKVLRESG-LKYVAVMPPHIGDQPLTGA------------------YTVTLDG------RGPSRVISKHDLGHFMLRC  188 (205)
T ss_dssp             HHHHHHHHTC-SEEEEECCSEEECCCCCSC------------------CEEESSS------CSSCSEEEHHHHHHHHHHT
T ss_pred             HHHHHHHhcC-CceEEEecceecCCCCccc------------------EEEeeCC------CCCCCcCCHHHHHHHHHHH
Confidence            333 1  124 9999999999987321111                  1122223      2233467899999999999


Q ss_pred             hcCcCCcCCCCceEEeec
Q 042242          262 ATNDDISSTKGQAFNAIN  279 (303)
Q Consensus       262 ~~~~~~~~~~g~~yni~~  279 (303)
                      +++++..+   +.+.++.
T Consensus       189 l~~~~~~g---~~~~~s~  203 (205)
T d1hdoa_         189 LTTDEYDG---HSTYPSH  203 (205)
T ss_dssp             TSCSTTTT---CEEEEEC
T ss_pred             hCCCCCCC---EEEecCC
Confidence            98887544   7777664

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.7e-23  Score=171.67  Aligned_cols=229  Identities=15%  Similarity=0.096  Sum_probs=150.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCe--EEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWK--VYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWA  105 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~~~  105 (303)
                      ++||||||||||||++++++|+ +.|++  |+.+.|++.+......+++++.+|+.+.+.+.++++++|.|+|+++....
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~   81 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPK   81 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCCCE
T ss_pred             CCEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEeeccc
Confidence            3799999999999999999999 57755  77778887665555678999999999999999999999999999654322


Q ss_pred             cCC-------------hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242          106 SQF-------------ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus       106 ~~~-------------~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      ...             .........+|+.++.+++..+......  +....++...+               .+..+.. 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~---------------~~~~~~~-  143 (252)
T d2q46a1          82 MKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK--HIVVVGSMGGT---------------NPDHPLN-  143 (252)
T ss_dssp             ECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS--EEEEEEETTTT---------------CTTCGGG-
T ss_pred             cccccchhhhhhcccccccchhhhccccccceeecccccccccc--ccccccccccC---------------CCCcccc-
Confidence            111             1111125678999999999988766322  22222211111               0011111 


Q ss_pred             CCccchHHHHHHHHHH-hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCcc
Q 042242          173 KSNNFYYVLEDLLKEK-LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD  250 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e~-~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (303)
                      ......|...+.+.+. .... ++++++||+.+||+..... .                  .........+ .....+++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~~~-~------------------~~~~~~~~~~-~~~~~~i~  203 (252)
T d2q46a1         144 KLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVR-E------------------LLVGKDDELL-QTDTKTVP  203 (252)
T ss_dssp             GGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTTSS-C------------------EEEESTTGGG-GSSCCEEE
T ss_pred             cccccchhhhhhhhhhhhhcccccceeecceEEECCCcchh-h------------------hhhccCcccc-cCCCCeEE
Confidence            1112225555444442 2222 9999999999999643311 1                  1111111112 33345778


Q ss_pred             HHHHHHHHHHHhcCcCCcCCCCceEEeecCC---CccHHhhHHHHHHHhcc
Q 042242          251 SRLVAEQHIWVATNDDISSTKGQAFNAINGP---RFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       251 ~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~---~~s~~e~~~~i~~~~g~  298 (303)
                      ++|+|++++.++.++...+   ++|||+++.   ..+++|+.+.+++..++
T Consensus       204 ~~Dva~a~~~~l~~~~~~g---~~~~i~~~~~~~~~~~~~~~~lf~~i~~r  251 (252)
T d2q46a1         204 RADVAEVCIQALLFEEAKN---KAFDLGSKPEGTSTPTKDFKALFSQVTSR  251 (252)
T ss_dssp             HHHHHHHHHHHTTCGGGTT---EEEEEEECCTTTSCCCCCHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhCCccccC---cEEEEeeCCCCCChhHHHHHHHHHHHHhc
Confidence            9999999999999887655   899998643   46788888888776653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.90  E-value=7.6e-24  Score=180.13  Aligned_cols=231  Identities=13%  Similarity=0.047  Sum_probs=151.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      ++||||||||||||++|+++|+ +.||+|++++|++....         ....+++++++|+.|.+.+.+.+++++.+++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~-~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASI-SLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            4679999999999999999999 68999999999765432         2356799999999999999999999988777


Q ss_pred             EeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242           99 IFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      ++.....           ..|..+..++++++.+.. ...++.+ |+   |+.          .+..+..+..|...   
T Consensus        82 ~~~~~~~-----------~~~~~~~~~~l~~a~~~~-~~~~v~~-Ss---~g~----------~~~~~~~~~~~~~~---  132 (312)
T d1qyda_          82 ALAGGVL-----------SHHILEQLKLVEAIKEAG-NIKRFLP-SE---FGM----------DPDIMEHALQPGSI---  132 (312)
T ss_dssp             CCCCSSS-----------STTTTTHHHHHHHHHHSC-CCSEEEC-SC---CSS----------CTTSCCCCCSSTTH---
T ss_pred             hhhhccc-----------ccchhhhhHHHHHHHHhc-CCcEEEE-ee---ccc----------cCCCcccccchhhh---
Confidence            7554322           223344566777777652 1222222 21   110          01112222221222   


Q ss_pred             HHHHHHHHH-HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHH
Q 042242          179 YVLEDLLKE-KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAE  256 (303)
Q Consensus       179 y~~~k~~~e-~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~  256 (303)
                      |...+...+ +.... ++++++||+.+||+............       ......+.+.+.+    ....++++++|+|+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~g----~~~~~~i~v~Dva~  201 (312)
T d1qyda_         133 TFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHM-------MPPRDKVLIYGDG----NVKGIWVDEDDVGT  201 (312)
T ss_dssp             HHHHHHHHHHHHHHTTCCBCEEECCEEHHHHTTTSSCTTCCS-------SCCSSEECCBTTS----CSEEEEECHHHHHH
T ss_pred             hhHHHHHHHHhhcccccceEEeccceeecCCccchhhHHHHh-------hhccccccccccc----ccccceeeHHHHHH
Confidence            444333333 32222 99999999999996443221111110       0012334444443    45677899999999


Q ss_pred             HHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          257 QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       257 a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +++.++.++...+  +..|++++++.+|++|+++.+++++|++.+
T Consensus       202 a~~~~l~~~~~~~--~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~  244 (312)
T d1qyda_         202 YTIKSIDDPQTLN--KTMYIRPPMNILSQKEVIQIWERLSEQNLD  244 (312)
T ss_dssp             HHHHHTTCGGGSS--SEEECCCGGGEEEHHHHHHHHHHHHTCCCE
T ss_pred             HHHHHhcCccccC--ceEEEeCCCcCCCHHHHHHHHHHHHCCCCe
Confidence            9999998876543  234667777889999999999999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.5e-23  Score=169.07  Aligned_cols=207  Identities=14%  Similarity=0.011  Sum_probs=139.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEeecc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWVT  103 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~~  103 (303)
                      |++|+|||||||||||++|+++|++++. ++|++++|++.+.. .....+....+|+.+.+.+.++++++|.|+|+++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            4568999999999999999999994333 37999999876543 234577888899999999999999998888887543


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHH
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLED  183 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k  183 (303)
                      .   ......++.+.|+.++.+++++|.+.  ++.++++.|+...|..                    +.++   |+..|
T Consensus        92 ~---~~~~~~~~~~~~~~~~~~~~~~a~~~--~v~~fi~~Ss~~~~~~--------------------~~~~---Y~~~K  143 (232)
T d2bkaa1          92 R---GKAGAEGFVRVDRDYVLKSAELAKAG--GCKHFNLLSSKGADKS--------------------SNFL---YLQVK  143 (232)
T ss_dssp             H---HHHHHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECCTTCCTT--------------------CSSH---HHHHH
T ss_pred             c---cccchhhhhhhcccccceeeeccccc--CccccccCCccccccC--------------------ccch---hHHHH
Confidence            2   22233347899999999999999876  3566766665333211                    0233   88888


Q ss_pred             HHHHHh-cCC-c-ceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHH
Q 042242          184 LLKEKL-AGK-V-AWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW  260 (303)
Q Consensus       184 ~~~e~~-~~~-~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~  260 (303)
                      ...|.. ... + +++|+||+.+||++..  .+....+  ...+..      .+++.     ......++++|+|+++++
T Consensus       144 ~~~E~~l~~~~~~~~~IlRP~~i~G~~~~--~~~~~~~--~~~~~~------~~~~~-----~~~~~~I~~~dvA~a~i~  208 (232)
T d2bkaa1         144 GEVEAKVEELKFDRYSVFRPGVLLCDRQE--SRPGEWL--VRKFFG------SLPDS-----WASGHSVPVVTVVRAMLN  208 (232)
T ss_dssp             HHHHHHHHTTCCSEEEEEECCEEECTTGG--GSHHHHH--HHHHHC------SCCTT-----GGGGTEEEHHHHHHHHHH
T ss_pred             HHhhhccccccccceEEecCceeecCCCc--CcHHHHH--HHHHhh------ccCCc-----ccCCCeEEHHHHHHHHHH
Confidence            877743 121 4 5899999999995432  2221111  111111      11222     122346889999999999


Q ss_pred             HhcCcCCcCCCCceEEeec
Q 042242          261 VATNDDISSTKGQAFNAIN  279 (303)
Q Consensus       261 ~~~~~~~~~~~g~~yni~~  279 (303)
                      ++..+...    +.+.+.+
T Consensus       209 ~~~~~~~~----~~~i~~~  223 (232)
T d2bkaa1         209 NVVRPRDK----QMELLEN  223 (232)
T ss_dssp             HHTSCCCS----SEEEEEH
T ss_pred             HHhcCccC----CeEEEcH
Confidence            98777542    4565554

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.89  E-value=8.5e-23  Score=172.53  Aligned_cols=229  Identities=13%  Similarity=0.077  Sum_probs=150.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc--CceeEEeeccccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL--EDVTHIFWVTWAS  106 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~--~~V~~~~~~~~~~  106 (303)
                      |||||||||||||++|++.|. +.|+ +++++++...          +.+|++|.+.+.+.++..  |.|+|+|+.....
T Consensus         1 MKILItG~tGfiG~~l~~~L~-~~g~-~v~~~~~~~~----------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~   68 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLA-PVGN-LIALDVHSKE----------FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVD   68 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSE-EEEECTTCSS----------SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCC-EEEEECCCcc----------ccCcCCCHHHHHHHHHHcCCCEEEEeccccccc
Confidence            579999999999999999998 5664 5566665432          237999999999999876  6799998766554


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHH
Q 042242          107 QFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLK  186 (303)
Q Consensus       107 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~  186 (303)
                      .+...+...++.|+.++.+++++++....++   ++.|+..+|...       ...|..|+++..|.++   |+..|...
T Consensus        69 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~ss~~~~~~~-------~~~~~~E~~~~~p~~~---y~~~k~~~  135 (298)
T d1n2sa_          69 KAESEPELAQLLNATSVEAIAKAANETGAWV---VHYSTDYVFPGT-------GDIPWQETDATSPLNV---YGKTKLAG  135 (298)
T ss_dssp             HHTTCHHHHHHHHTHHHHHHHHHHTTTTCEE---EEEEEGGGSCCC-------TTCCBCTTSCCCCSSH---HHHHHHHH
T ss_pred             ccccCccccccccccccccchhhhhcccccc---ccccccccccCC-------CCCCCccccccCCCch---Hhhhhhhh
Confidence            5555555688999999999999998765333   333333344332       2557889888777676   88887777


Q ss_pred             HHhc--CCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhc-
Q 042242          187 EKLA--GKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVAT-  263 (303)
Q Consensus       187 e~~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~-  263 (303)
                      |...  ......++|++..++....+.   ...+  ...+..  ..++...+      ....+++++.|+++++..++. 
T Consensus       136 e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~--~~~~~~~~------~~~~~~~~~~d~~~~~~~~i~~  202 (298)
T d1n2sa_         136 EKALQDNCPKHLIFRTSWVYAGKGNNF---AKTM--LRLAKE--RQTLSVIN------DQYGAPTGAELLADCTAHAIRV  202 (298)
T ss_dssp             HHHHHHHCSSEEEEEECSEECSSSCCH---HHHH--HHHHHH--CSEEEEEC------SCEECCEEHHHHHHHHHHHHHH
T ss_pred             hhhHHhhhcccccccccceeeccCCcc---chhh--hhhhcc--cceeeccc------ceeecccccchHHHHHHHHHhh
Confidence            6321  114556666666665322211   1111  111222  34444444      333445666666666655443 


Q ss_pred             --CcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          264 --NDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       264 --~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                        .....   +++||+++++.+++.|+++.+.+..++
T Consensus       203 ~~~~~~~---~~~~n~~~~~~~~~~~~~~~i~~~~~~  236 (298)
T d1n2sa_         203 ALNKPEV---AGLYHLVAGGTTTWHDYAALVFDEARK  236 (298)
T ss_dssp             HHHCGGG---CEEEECCCBSCEEHHHHHHHHHHHHHH
T ss_pred             hhccccc---cccccccCCCceecHHHHHHHHhhhhc
Confidence              22222   379999999999999999999876644

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.89  E-value=1.3e-23  Score=177.85  Aligned_cols=225  Identities=10%  Similarity=0.055  Sum_probs=145.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +.|||||||||||||++++++|+ +.||+|++++|++....          ....+++++.+|+.+...+...+++.+.|
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~-~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v   80 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASL-DLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV   80 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceee
Confidence            35789999999999999999999 68999999999866531          12457899999999999999999998878


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNN  176 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~  176 (303)
                      +|.+....               ..+..++++++.....  .++++.|+...              +..+....   .+.
T Consensus        81 i~~~~~~~---------------~~~~~~~~~a~~~~~~--~~~~~~s~~~~--------------~~~~~~~~---~~~  126 (307)
T d1qyca_          81 ISTVGSLQ---------------IESQVNIIKAIKEVGT--VKRFFPSEFGN--------------DVDNVHAV---EPA  126 (307)
T ss_dssp             EECCCGGG---------------SGGGHHHHHHHHHHCC--CSEEECSCCSS--------------CTTSCCCC---TTH
T ss_pred             eecccccc---------------cchhhHHHHHHHHhcc--ccceeeecccc--------------cccccccc---ccc
Confidence            88754321               1223346666665522  22223222100              11111111   111


Q ss_pred             chHHHHHHHHH-H--hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHH
Q 042242          177 FYYVLEDLLKE-K--LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRL  253 (303)
Q Consensus       177 ~~y~~~k~~~e-~--~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  253 (303)
                      ..+...+...+ +  ..+ ++++++||+.+||+.......+...      ..  .+.....++..    ....++++++|
T Consensus       127 ~~~~~~~~~~~~~~~~~~-~~~~i~r~~~v~g~~~~~~~~~~~~------~~--~~~~~~~~~~~----~~~~~~i~v~D  193 (307)
T d1qyca_         127 KSVFEVKAKVRRAIEAEG-IPYTYVSSNCFAGYFLRSLAQAGLT------AP--PRDKVVILGDG----NARVVFVKEED  193 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHT-CCBEEEECCEEHHHHTTTTTCTTCS------SC--CSSEEEEETTS----CCEEEEECHHH
T ss_pred             cccccccccccchhhccC-CCceecccceecCCCccchhhhhhh------hh--hcccceeeecc----cccccCCcHHH
Confidence            11222222222 1  224 8999999999999654322111111      01  12333444433    55677899999


Q ss_pred             HHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccCC
Q 042242          254 VAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVP  301 (303)
Q Consensus       254 ~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~~  301 (303)
                      +|+++++++..+...+  +..||+++++.+|+.|+++.+++++|++..
T Consensus       194 va~~~~~~l~~~~~~~--~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~  239 (307)
T d1qyca_         194 IGTFTIKAVDDPRTLN--KTLYLRLPANTLSLNELVALWEKKIDKTLE  239 (307)
T ss_dssp             HHHHHHTTSSCGGGTT--EEEECCCGGGEEEHHHHHHHHHHHTTSCCE
T ss_pred             HHHHHHHHhcChhhcC--ceeEEeCCCCccCHHHHHHHHHHHHCCCCc
Confidence            9999999998876543  245667888999999999999999998753

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=4.7e-22  Score=168.50  Aligned_cols=241  Identities=13%  Similarity=0.106  Sum_probs=136.6

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccccCCCeEEEEecCCCHHHH-HHHHh-----ccCceeEEeecc
Q 042242           31 AVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAIQSSSYCFISCDLLNPLDI-KRKLT-----LLEDVTHIFWVT  103 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l-~~~~~-----~~~~V~~~~~~~  103 (303)
                      |||||||||||++|+++|+ +.|+ +|+++++-....... ........|..+.+.+ ...+.     .++.|+|+++..
T Consensus         2 ILITGgsGfIGs~lv~~L~-~~g~~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALN-DKGITDILVVDNLKDGTKFV-NLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHH-TTTCCCEEEEECCSSGGGGH-HHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHH-hCCCCeEEEEECCCCcchhh-cccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            8999999999999999999 5685 699987543321100 0001111233333332 23332     222366666544


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHH
Q 042242          104 WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLED  183 (303)
Q Consensus       104 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k  183 (303)
                      .........  ..+.|+.++.+++++++....+  ++.+.++ .+|.+..       ..+..++.+..|.++   |+.+|
T Consensus        80 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~i~--~v~~ss~-~~~~~~~-------~~~~~~~~~~~~~~~---Y~~~K  144 (307)
T d1eq2a_          80 STTEWDGKY--MMDNNYQYSKELLHYCLEREIP--FLYASSA-ATYGGRT-------SDFIESREYEKPLNV---YGYSK  144 (307)
T ss_dssp             CTTCCCHHH--HHHHTHHHHHHHHHHHHHHTCC--EEEEEEG-GGGTTCC-------SCBCSSGGGCCCSSH---HHHHH
T ss_pred             ccccccccc--cccccccccccccccccccccc--ccccccc-ccccccc-------ccccccccccccccc---ccccc
Confidence            444444433  7788999999999999887543  3333333 3443331       223344444444455   88877


Q ss_pred             HHHH-----HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHH-HhhhCCCceeeCCchhhhhhhcccCccHHHHHH
Q 042242          184 LLKE-----KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAE  256 (303)
Q Consensus       184 ~~~e-----~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~  256 (303)
                      ...|     +.... ++++++||+++||+..............+.. +.. ...+..+.|+.    ....++++++|++.
T Consensus       145 ~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~----~~~r~~~~v~d~~~  219 (307)
T d1eq2a_         145 FLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNN-GESPKLFEGSE----NFKRDFVYVGDVAD  219 (307)
T ss_dssp             HHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC------------------CBCEEEHHHHHH
T ss_pred             chhhhhccccccccccccccccceeEeecccccccccccccccccccccc-ccceeeecCcc----ceeeeeeecccHHH
Confidence            7666     33333 9999999999999754322111111111111 222 12233333433    45667888999999


Q ss_pred             HHHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcc
Q 042242          257 QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGV  298 (303)
Q Consensus       257 a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~  298 (303)
                      ++..++.++..     ..||++.++..|++|+++.+.+..+.
T Consensus       220 ~~~~~~~~~~~-----~~~~~~~~~~~si~~i~~~i~~~~~~  256 (307)
T d1eq2a_         220 VNLWFLENGVS-----GIFNLGTGRAESFQAVADATLAYHKK  256 (307)
T ss_dssp             HHHHHHHHCCC-----EEEEESCSCCBCHHHHHHHC------
T ss_pred             HHHHHhhhccc-----cccccccccchhHHHHHHHHHHhcCC
Confidence            99888876532     68999999999999999999876653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.84  E-value=1e-20  Score=163.60  Aligned_cols=228  Identities=10%  Similarity=-0.026  Sum_probs=138.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHH-HHHHHhccCceeEEee
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLD-IKRKLTLLEDVTHIFW  101 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~-l~~~~~~~~~V~~~~~  101 (303)
                      ..|+|+|||||||||++|+++|+ +.||+|++++|++.+..    ...++++++++|+.|..+ +..++.+++.++++..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll-~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~   80 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAA-AVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   80 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHH-hCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence            35899999999999999999999 68999999999876643    234689999999998654 6778877775444422


Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-CCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHH
Q 042242          102 VTWASQFASDMHKCCEQNKAMMCNALNAILPRA-KALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYV  180 (303)
Q Consensus       102 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~  180 (303)
                      . .           ...++....++++++.+.+ .+++.+|+..   .+                +.....+..+   |.
T Consensus        81 ~-~-----------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~---~~----------------~~~~~~~~~~---~~  126 (350)
T d1xgka_          81 S-Q-----------AGDEIAIGKDLADAAKRAGTIQHYIYSSMP---DH----------------SLYGPWPAVP---MW  126 (350)
T ss_dssp             S-T-----------TSCHHHHHHHHHHHHHHHSCCSEEEEEECC---CG----------------GGTSSCCCCT---TT
T ss_pred             c-c-----------cchhhhhhhHHHHHHHHhCCCceEEEeecc---cc----------------ccCCcccchh---hh
Confidence            1 1           1234455678899988763 3333333211   11                0001111222   34


Q ss_pred             HHHHHHH-HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCcc-HHHHHHH
Q 042242          181 LEDLLKE-KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSD-SRLVAEQ  257 (303)
Q Consensus       181 ~~k~~~e-~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~d~a~a  257 (303)
                      .+|...+ +.... ++++++||+.+++..............    ... .......+....    ....+++ .+|++.+
T Consensus       127 ~~k~~~~~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~----~~~~~i~~~~Dva~~  197 (350)
T d1xgka_         127 APKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMEL----MPD-GTFEWHAPFDPD----IPLPWLDAEHDVGPA  197 (350)
T ss_dssp             HHHHHHHHHHHTSSSCEEEEEECEEGGGCBSSSCSSCBEEE----CTT-SCEEEEESSCTT----SCEEEECHHHHHHHH
T ss_pred             hhHHHHHHHHHhhccCceeeeeceeeccccccccccccccc----ccc-ccceeeecccCC----CcceEEEeHHHHHHH
Confidence            4444443 22233 899999999988743221111100000    000 011223333332    2222344 4789988


Q ss_pred             HHHHhcCcCCcCCCCceEEeecCCCccHHhhHHHHHHHhcccC
Q 042242          258 HIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKV  300 (303)
Q Consensus       258 ~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~~~~i~~~~g~~~  300 (303)
                      +..++..+... ..|+.|++++ +.+|+.|+++.+++++|+++
T Consensus       198 v~~~l~~~~~~-~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v  238 (350)
T d1xgka_         198 LLQIFKDGPQK-WNGHRIALTF-ETLSPVQVCAAFSRALNRRV  238 (350)
T ss_dssp             HHHHHHHCHHH-HTTCEEEECS-EEECHHHHHHHHHHHHTSCE
T ss_pred             HHHHHhCChhh-cCCeEEEEeC-CcCCHHHHHHHHHHHHCCcc
Confidence            88777553211 2358898887 57999999999999999875

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1.5e-20  Score=151.05  Aligned_cols=187  Identities=16%  Similarity=0.147  Sum_probs=116.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh-ccCceeEEeeccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT-LLEDVTHIFWVTW  104 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~-~~~~V~~~~~~~~  104 (303)
                      +|||||||||||||++|+++|+ +.|+  +|+++.|++...   .+.+   ..+..|..++...+. .+|+|+|+++...
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~-~~~~~~~v~~~~r~~~~~---~~~~---~~~~~d~~~~~~~~~~~~d~vi~~~g~~~   74 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRIL-SEPTLAKVIAPARKALAE---HPRL---DNPVGPLAELLPQLDGSIDTAFCCLGTTI   74 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHH-HCTTCCEEECCBSSCCCC---CTTE---ECCBSCHHHHGGGCCSCCSEEEECCCCCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-hCCCeEEEEEEeCCchhh---cccc---cccccchhhhhhccccchheeeeeeeeec
Confidence            5899999999999999999999 4665  588888776432   2333   344555444433333 3566788765432


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH
Q 042242          105 ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL  184 (303)
Q Consensus       105 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~  184 (303)
                      ......  .++.+.|+.++.+++++|++.  .+.++++.|+...|..                    +..+   |..+|.
T Consensus        75 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~--~v~~~i~~Ss~~~~~~--------------------~~~~---y~~~K~  127 (212)
T d2a35a1          75 KEAGSE--EAFRAVDFDLPLAVGKRALEM--GARHYLVVSALGADAK--------------------SSIF---YNRVKG  127 (212)
T ss_dssp             HHHSSH--HHHHHHHTHHHHHHHHHHHHT--TCCEEEEECCTTCCTT--------------------CSSH---HHHHHH
T ss_pred             cccccc--cccccchhhhhhhcccccccc--cccccccccccccccc--------------------cccc---hhHHHH
Confidence            222222  347899999999999999975  4566666665323210                    0233   888888


Q ss_pred             HHHHh-cCC-c-ceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHH
Q 042242          185 LKEKL-AGK-V-AWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWV  261 (303)
Q Consensus       185 ~~e~~-~~~-~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~  261 (303)
                      ..|.. ... + +++|+||+.|||+.....  ....+      ..  ......++.   +     .+++++|+|++++.+
T Consensus       128 ~~E~~l~~~~~~~~~I~Rp~~v~G~~~~~~--~~~~~------~~--~~~~~~~~~---~-----~~i~v~DvA~ai~~~  189 (212)
T d2a35a1         128 ELEQALQEQGWPQLTIARPSLLFGPREEFR--LAEIL------AA--PIARILPGK---Y-----HGIEACDLARALWRL  189 (212)
T ss_dssp             HHHHHHTTSCCSEEEEEECCSEESTTSCEE--GGGGT------TC--CCC----CH---H-----HHHHHHHHHHHHHHH
T ss_pred             HHhhhccccccccceeeCCcceeCCccccc--HHHHH------HH--HHhhccCCC---C-----cEEEHHHHHHHHHHH
Confidence            88743 222 4 699999999999654322  11110      00  111112221   1     247999999999998


Q ss_pred             hcCcC
Q 042242          262 ATNDD  266 (303)
Q Consensus       262 ~~~~~  266 (303)
                      +.++.
T Consensus       190 ~~~~~  194 (212)
T d2a35a1         190 ALEEG  194 (212)
T ss_dssp             HTCCC
T ss_pred             HcCCC
Confidence            87764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=4.9e-15  Score=120.15  Aligned_cols=210  Identities=13%  Similarity=0.085  Sum_probs=132.9

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc-------cCce
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL-------LEDV   96 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V   96 (303)
                      +++++|++|||||++.||+++++.|+ +.|++|++++|+....    .++..+++|++|+++++++++.       .|.+
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiL   77 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHRGSGAP----KGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVL   77 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSSCCC----TTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCcchh----cCceEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence            46789999999999999999999999 6899999999987653    4677899999999988776654       4557


Q ss_pred             eEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           97 THIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        97 ~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      +|.|+...    ...+.++..+.+++|+.++..+.+.+...  ..+..+++.+++...+.+.                +.
T Consensus        78 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~----------------~~  141 (237)
T d1uzma1          78 VSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI----------------GN  141 (237)
T ss_dssp             EEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------------C
T ss_pred             EeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCC----------------cc
Confidence            77765432    22344556678999999998888776654  2233345554442121000                00


Q ss_pred             CCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          171 VSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                        ..+   |+.+|...+         +....+++..+.|+.+..+....   + .... .....+  ..|          
T Consensus       142 --~~~---Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~---~-~~~~-~~~~~~--~~p----------  199 (237)
T d1uzma1         142 --QAN---YAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA---L-DERI-QQGALQ--FIP----------  199 (237)
T ss_dssp             --CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH---S-CHHH-HHHHGG--GCT----------
T ss_pred             --cHH---HHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc---c-CHHH-HHHHHh--cCC----------
Confidence              122   776655433         22211999999999887531110   0 0100 000111  112          


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                         +-.+.+++|+|.++++++..... ...|+.+.+.+|
T Consensus       200 ---l~R~~~pedvA~~v~fL~S~~s~-~itG~~i~vdGG  234 (237)
T d1uzma1         200 ---AKRVGTPAEVAGVVSFLASEDAS-YISGAVIPVDGG  234 (237)
T ss_dssp             ---TCSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTT
T ss_pred             ---CCCCcCHHHHHHHHHHHhCchhc-CCcCCeEEECCC
Confidence               11256889999999988854432 245688988877

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=2.4e-14  Score=116.41  Aligned_cols=213  Identities=12%  Similarity=0.062  Sum_probs=135.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc-------cCce
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL-------LEDV   96 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V   96 (303)
                      +++|+++||||++.||+.+++.|+ +.|++|++++|++.+..  .+..+.+.+.+|++|+++++++++.       +|.+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~-~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   81 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFA-KEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGV   81 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence            357999999999999999999999 68999999999876543  2345788899999999988777654       3446


Q ss_pred             eEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           97 THIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        97 ~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      +|.|+...    ...+.++..+.+++|+.++..+.+++.+.  ..+...++..++. .+.+.                + 
T Consensus        82 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~----------------~-  143 (242)
T d1ulsa_          82 VHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGN----------------L-  143 (242)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCC----------------T-
T ss_pred             EECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCC----------------C-
Confidence            77665432    22344556678999999999999887765  2223333333321 11000                0 


Q ss_pred             CCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhh
Q 042242          171 VSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       171 ~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                       ...+   |+.+|...+         +....+++..+.|+.+-.+......   ...  ......  ..|+         
T Consensus       144 -~~~~---Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~---~~~--~~~~~~--~~pl---------  203 (242)
T d1ulsa_         144 -GQAN---YAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP---EKV--REKAIA--ATPL---------  203 (242)
T ss_dssp             -TCHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC---HHH--HHHHHH--TCTT---------
T ss_pred             -CCcc---hHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCC---HHH--HHHHHh--cCCC---------
Confidence             0122   666555333         2221299999999999764322110   111  001111  1221         


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                          -.+.+++|+|.++++++...... ..|+.+.+.+|..
T Consensus       204 ----~R~~~pedia~~v~fL~S~~s~~-itG~~i~vDGG~t  239 (242)
T d1ulsa_         204 ----GRAGKPLEVAYAALFLLSDESSF-ITGQVLFVDGGRT  239 (242)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             ----CCCCCHHHHHHHHHHHhchhhCC-CCCcEEEECCCcc
Confidence                12457889999999887544321 4568998988864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=3.6e-15  Score=121.33  Aligned_cols=210  Identities=11%  Similarity=0.067  Sum_probs=134.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      .++|+++||||++.||+++++.|+ +.|++|++++|++.+..    .......++++|++|+++++++++.       .|
T Consensus         4 L~gK~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            467999999999999999999999 68999999999876542    1234678899999999988777654       34


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.|+....    +.+.++..+.+++|+.++..+.+.+...  ..+--+++.+++...+.+.                
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~----------------  146 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT----------------  146 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------------
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccc----------------
Confidence            46666654322    2234556668999999999998876544  1222345555442222110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +.  ..+   |+.+|...+         +.+..+++..+.|+.+-.+.....    ..        .....|        
T Consensus       147 ~~--~~~---Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~----~~--------~~~~~p--------  201 (244)
T d1nffa_         147 VA--CHG---YTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV----PE--------DIFQTA--------  201 (244)
T ss_dssp             TT--BHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS----CT--------TCSCCS--------
T ss_pred             cc--ccc---hhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh----hH--------HHHhcc--------
Confidence            00  112   666555333         222129999999998875321110    00        000111        


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                           +-.+.+++|+|.++++++...... ..|+.+.+.+|...
T Consensus       202 -----l~R~~~p~diA~~v~fL~s~~s~~-itG~~i~vDGG~~a  239 (244)
T d1nffa_         202 -----LGRAAEPVEVSNLVVYLASDESSY-STGAEFVVDGGTVA  239 (244)
T ss_dssp             -----SSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTGGG
T ss_pred             -----ccCCCCHHHHHHHHHHHhChhhCC-CcCCEEEECCCeec
Confidence                 122568899999999988543321 45689988887543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.62  E-value=2.3e-14  Score=116.91  Aligned_cols=215  Identities=13%  Similarity=0.090  Sum_probs=130.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +.+|+++||||++.||+.+++.|+ +.|++|++.+|++.+..     ....++..+++|++|.++++++++.       +
T Consensus         3 L~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            467999999999999999999999 68999999999875422     2234688899999999988776643       4


Q ss_pred             CceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.++|.|+....    +.+.++..+.+++|+.++..+.+++.+.  ..+.-+++.+++.....+.               
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~---------------  146 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI---------------  146 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC---------------
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC---------------
Confidence            556776654322    2344566679999999999999887665  1222344444432121000               


Q ss_pred             CCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                       +.  ..+   |..+|....         +....+++..+.|+.|-.+.....  .....  ...... ..         
T Consensus       147 -~~--~~~---Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~--~~~~~--~~~~~~-~~---------  206 (247)
T d2ew8a1         147 -EA--YTH---YISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS--ALSAM--FDVLPN-ML---------  206 (247)
T ss_dssp             -SS--CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------C-TT---------
T ss_pred             -cc--ccc---chhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccc--ccchh--HHHHHH-Hh---------
Confidence             00  122   666555333         222129999999998876321110  00000  000000 00         


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                          ..+-.+..++|+|.++++++..... ...|+.+.+.+|.
T Consensus       207 ----~~l~r~~~pedvA~~v~fL~S~~s~-~itG~~i~vDGG~  244 (247)
T d2ew8a1         207 ----QAIPRLQVPLDLTGAAAFLASDDAS-FITGQTLAVDGGM  244 (247)
T ss_dssp             ----SSSCSCCCTHHHHHHHHHHTSGGGT-TCCSCEEEESSSC
T ss_pred             ----ccCCCCCCHHHHHHHHHHHhCchhc-CCcCCeEEECCCE
Confidence                1111245778999999988754432 2456889888874

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=4.8e-15  Score=121.02  Aligned_cols=221  Identities=10%  Similarity=-0.019  Sum_probs=135.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhc-------cCcee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTL-------LEDVT   97 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~V~   97 (303)
                      .++|++|||||++.||+.+++.|+ +.|++|++++|+++... .+..+..++++|++|.++++++++.       +|.++
T Consensus         3 l~GK~alITGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFA-REGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            357999999999999999999999 68999999999876532 2223567889999999887776654       45567


Q ss_pred             EEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCC
Q 042242           98 HIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRV  171 (303)
Q Consensus        98 ~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~  171 (303)
                      |.|+...    .+.+.++..+.+++|+.++..+.+++.+.  ..+-.+++.+++...+.+.                +. 
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~----------------~~-  144 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE----------------QE-  144 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC----------------TT-
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc----------------cc-
Confidence            7655432    22344555668999999999999988765  2233455555543222110                00 


Q ss_pred             CCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHH-HHHHHHhhhCCCceeeCCchhhh
Q 042242          172 SKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCL-CVYGAVCKHLNLPFVFGGTREIW  241 (303)
Q Consensus       172 p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~  241 (303)
                       ..+   |..+|...+         +....+++..+.|+.+-.+............ .....+..  ..           
T Consensus       145 -~~~---Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--~~-----------  207 (248)
T d2d1ya1         145 -NAA---YNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWED--LH-----------  207 (248)
T ss_dssp             -BHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHT--TS-----------
T ss_pred             -cch---hHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHh--cC-----------
Confidence             122   666555333         2221299999999888652100000000000 00000000  11           


Q ss_pred             hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          242 EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       242 ~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                        .+-.+..++|+|.++++++..... ...|+.+.+.+|..-|
T Consensus       208 --pl~R~~~pedia~~v~fL~S~~s~-~itG~~i~vDGG~tas  247 (248)
T d2d1ya1         208 --ALRRLGKPEEVAEAVLFLASEKAS-FITGAILPVDGGMTAS  247 (248)
T ss_dssp             --TTSSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTGGGB
T ss_pred             --CCCCCcCHHHHHHHHHHHhCchhc-CCCCcEEEcCcCcccc
Confidence              112256789999999988754332 2456899998886544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.61  E-value=2.4e-14  Score=117.07  Aligned_cols=212  Identities=13%  Similarity=0.103  Sum_probs=132.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhcc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL-----   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~-----   93 (303)
                      ..+|++|||||++.||+++++.|+ +.|++|++++|++....       ....++..+++|++|.++++++++.+     
T Consensus         8 lenKvalITGas~GIG~a~a~~la-~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            357999999999999999999999 78999999999865532       12246788999999999888777643     


Q ss_pred             --CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 --EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 --~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        |.++|.++...    ...+..+..+.+++|+.++..+.+++...  ..+.-+++.+++...+.+.             
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~-------------  153 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN-------------  153 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-------------
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCC-------------
Confidence              44555544322    22234555668999999999888877654  1223455555543222110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +.  ..+   |+.+|...+         +. .+ +++..+.||.+-.+......   ...  ...+..  ..|+   
T Consensus       154 ---~~--~~~---Y~asKaal~~ltr~lA~el~~~g-IrVN~V~PG~v~T~~~~~~~---~~~--~~~~~~--~~pl---  214 (251)
T d2c07a1         154 ---VG--QAN---YSSSKAGVIGFTKSLAKELASRN-ITVNAIAPGFISSDMTDKIS---EQI--KKNIIS--NIPA---  214 (251)
T ss_dssp             ---TT--CHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCC-----CC---HHH--HHHHHT--TCTT---
T ss_pred             ---CC--CHH---HHHHHHHHHHHHHHHHHHhhhhC-eEEEEEccCCEecccccccC---HHH--HHHHHh--cCCC---
Confidence               00  122   666655433         22 23 99999999999764221110   111  011111  2221   


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                -.+...+|+|.++++++...... ..|+.+.+.+|-
T Consensus       215 ----------~R~~~pedvA~~v~fL~S~~s~~-itG~~i~vDGG~  249 (251)
T d2c07a1         215 ----------GRMGTPEEVANLACFLSSDKSGY-INGRVFVIDGGL  249 (251)
T ss_dssp             ----------SSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTS
T ss_pred             ----------CCCcCHHHHHHHHHHHhCchhCC-CcCcEEEECCCc
Confidence                      12557889999999888544322 456889888874

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.61  E-value=8.9e-14  Score=114.89  Aligned_cols=222  Identities=12%  Similarity=0.073  Sum_probs=135.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-cCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-QSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +.+|++|||||++.||+.+++.|+ +.|++|++++|+..+..     . ....+.++.+|++|.++++++++.       
T Consensus         4 L~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999999999999 68999999999875532     1 234577889999999988777753       


Q ss_pred             cCceeEEeecccc------cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 LEDVTHIFWVTWA------SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ~~~V~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                      +|.++|.++....      ..+.++....+++|+.++..+.+++.+.  ..+-..++.+++...+...            
T Consensus        83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~------------  150 (268)
T d2bgka1          83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG------------  150 (268)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC------------
T ss_pred             cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccc------------
Confidence            4556666654221      2233455568999999999998887655  1222344444332121000            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                              ......|+.+|...+         +....+++..+.|+.+-.+...........  ...........|   .
T Consensus       151 --------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~--~~~~~~~~~~~~---~  217 (268)
T d2bgka1         151 --------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSS--RVEELAHQAANL---K  217 (268)
T ss_dssp             --------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHH--HHHHHHHHTCSS---C
T ss_pred             --------cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHH--HHHHHHHhcccc---C
Confidence                    000112666554333         222129999999999877432211111011  111111111111   1


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      +          .+..++|+|.++++++..... ...|+.+.+.+|...+
T Consensus       218 g----------r~~~pedvA~~v~fL~S~~s~-~itGq~i~VDGG~t~~  255 (268)
T d2bgka1         218 G----------TLLRAEDVADAVAYLAGDESK-YVSGLNLVIDGGYTRT  255 (268)
T ss_dssp             S----------CCCCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTGGGC
T ss_pred             C----------CCcCHHHHHHHHHHHhChhhC-CccCceEEECcCcccC
Confidence            1          155789999999998854332 2456999999886544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=8.6e-15  Score=119.17  Aligned_cols=214  Identities=14%  Similarity=0.126  Sum_probs=134.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      .++|+++||||++.||+++++.|+ +.|++|++++|+++...    ....+...+.+|++|.++++++++.       +|
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVD   80 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcc
Confidence            367999999999999999999999 68999999999876532    1134677889999999988777654       45


Q ss_pred             ceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.|+...    ...+.++..+.+++|+.++..+++++.+.  ..+--+++.+++...+.+.                
T Consensus        81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~----------------  144 (243)
T d1q7ba_          81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGN----------------  144 (243)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------------
T ss_pred             eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCC----------------
Confidence            5666654432    22234555678999999999999888765  1223445555543222110                


Q ss_pred             CCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +.  ..+   |..+|...+         +....+++..+.||.+-.+.....   ...  ....+..  ..|+       
T Consensus       145 ~~--~~~---Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~---~~~--~~~~~~~--~~pl-------  205 (243)
T d1q7ba_         145 GG--QAN---YAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL---SDD--QRAGILA--QVPA-------  205 (243)
T ss_dssp             TT--CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHH--HHHHHHT--TCTT-------
T ss_pred             CC--CHH---HHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhh---hhh--HHHHHHh--cCCC-------
Confidence            00  122   666655433         222129999999998865311111   011  0011111  2221       


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                            -.+..++|+|.++++++..... ...|+.+.+.+|..
T Consensus       206 ------~R~~~pedvA~~v~fL~S~~s~-~itGq~i~vdGG~~  241 (243)
T d1q7ba_         206 ------GRLGGAQEIANAVAFLASDEAA-YITGETLHVNGGMY  241 (243)
T ss_dssp             ------SSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTSS
T ss_pred             ------CCCCCHHHHHHHHHHHhCchhc-CCcCCeEEECCCeE
Confidence                  1255788999999998854432 24568998888753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.3e-14  Score=115.80  Aligned_cols=215  Identities=10%  Similarity=0.046  Sum_probs=135.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhccC---ceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTLLE---DVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~~~---~V~~~   99 (303)
                      ..+|++|||||++.||+++++.|+ +.|++|++++|++.+..   .+.+++..+.+|++|.++++++++...   .++|.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la-~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            467999999999999999999999 68999999999876542   234578899999999999999887654   36665


Q ss_pred             eeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242          100 FWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus       100 ~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      ++...    ...+.++....+++|+.++..+.+++.+.   ......++.+++...+...                   |
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~-------------------~  144 (244)
T d1pr9a_          84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV-------------------T  144 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-------------------T
T ss_pred             cccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc-------------------c
Confidence            54432    22234555668999999999888876653   2233455555442221000                   0


Q ss_pred             CCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          173 KSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      .  ...|+.+|...+         +....+++..+.|+.|..+......   ........+..  ..|+           
T Consensus       145 ~--~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~---~~~~~~~~~~~--~~pl-----------  206 (244)
T d1pr9a_         145 N--HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATW---SDPHKAKTMLN--RIPL-----------  206 (244)
T ss_dssp             T--BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTS---CSHHHHHHHHT--TCTT-----------
T ss_pred             c--hhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhc---cChHHHHHHHh--cCCC-----------
Confidence            1  112666554333         3221299999999988763211110   00001111111  2221           


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                        -.+.+++|+|.++++++.+... ...|+.+.+.+|.
T Consensus       207 --~R~~~peevA~~v~fL~S~~a~-~itG~~i~vDGG~  241 (244)
T d1pr9a_         207 --GKFAEVEHVVNAILFLLSDRSG-MTTGSTLPVEGGF  241 (244)
T ss_dssp             --CSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTG
T ss_pred             --CCCcCHHHHHHHHHHHhCchhC-CcCCcEEEECccH
Confidence              1256788999999988754332 2456888888774

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.6e-14  Score=116.17  Aligned_cols=216  Identities=11%  Similarity=0.030  Sum_probs=134.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhccC---ceeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTLLE---DVTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~~~---~V~~~   99 (303)
                      ..+|++|||||++.||+.+++.|+ +.|++|++++|++++..   .+.+++..+.+|++|.++++++++...   .++|.
T Consensus         3 l~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn   81 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALH-ASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   81 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEEC
Confidence            357999999999999999999999 68999999999876532   234678899999999999999998654   46666


Q ss_pred             eeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCC
Q 042242          100 FWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVS  172 (303)
Q Consensus       100 ~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p  172 (303)
                      |+...    ...+..+....+++|+.++..+.+++...   ...-..++.+++...+...                +.  
T Consensus        82 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------------~~--  143 (242)
T d1cyda_          82 AALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF----------------PN--  143 (242)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC----------------TT--
T ss_pred             CccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC----------------Cc--
Confidence            55432    22345555668999999999988876542   1122344444432111000                00  


Q ss_pred             CCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          173 KSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       173 ~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      ...   |+.+|....         +....+++..+.|+.+-.+....   ....-.....+..  ..|            
T Consensus       144 ~~~---Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~---~~~~~~~~~~~~~--~~p------------  203 (242)
T d1cyda_         144 LIT---YSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKK---VSADPEFARKLKE--RHP------------  203 (242)
T ss_dssp             BHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHH---HTCCHHHHHHHHH--HST------------
T ss_pred             ccc---ccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHh---hcCCHHHHHHHHh--cCC------------
Confidence            112   666555443         22211999999998886521100   0000000111111  112            


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       +-.+..++|+|.++++++..... ...|+.+.+.+|..
T Consensus       204 -l~R~~~peeva~~v~fL~S~~s~-~itG~~i~vDGG~~  240 (242)
T d1cyda_         204 -LRKFAEVEDVVNSILFLLSDRSA-STSGGGILVDAGYL  240 (242)
T ss_dssp             -TSSCBCHHHHHHHHHHHHSGGGT-TCCSSEEEESTTGG
T ss_pred             -CCCCcCHHHHHHHHHHHhCchhc-CcCCceEEeCcchh
Confidence             11256788999999988754332 24568898888743

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.59  E-value=9.8e-15  Score=119.86  Aligned_cols=224  Identities=13%  Similarity=0.056  Sum_probs=134.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++|+++||||++.||+++++.|+ +.|++|++++|+.++..    ....++..+++|++|+++++++++.       +|.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYV-REGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            57899999999999999999999 68999999999876532    1235788899999999988877754       455


Q ss_pred             eeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           96 VTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        96 V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      ++|.++...    ...+.++..+.+++|+.++..+.+++...   ..+--+++.+++...+.+.                
T Consensus        83 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~----------------  146 (256)
T d1k2wa_          83 LVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE----------------  146 (256)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------------
T ss_pred             EEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc----------------
Confidence            666655432    22234555668999999999888875543   2233455555543222000                


Q ss_pred             CCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +.  ..+   |..+|...+         +....+++..+.||.+-.+...   .......   ...   ..+  ......
T Consensus       147 ~~--~~~---Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~---~~~~~~~---~~~---~~~--~~~~~~  210 (256)
T d1k2wa_         147 AL--VGV---YCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWD---GVDAKFA---DYE---NLP--RGEKKR  210 (256)
T ss_dssp             TT--CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHH---HHHHHHH---HHH---TCC--TTHHHH
T ss_pred             cc--ccc---hhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhh---hhhhhhh---hhc---cCC--hHHHHH
Confidence            00  112   666554333         2221299999999888763110   0000100   000   000  000000


Q ss_pred             hh--hhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          240 IW--EEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       240 ~~--~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      ..  ...+--+..++|+|.++++++..... ...|+.+.+.+|..+|
T Consensus       211 ~~~~~~PlgR~~~p~evA~~v~fL~S~~a~-~iTG~~i~vDGG~~ms  256 (256)
T d1k2wa_         211 QVGAAVPFGRMGRAEDLTGMAIFLATPEAD-YIVAQTYNVDGGNWMS  256 (256)
T ss_dssp             HHHHHSTTSSCBCHHHHHHHHHHTTSGGGT-TCCSCEEEESTTSSCC
T ss_pred             HHHhcCCCCCCcCHHHHHHHHHHHhCchhC-CccCceEEECcchhhC
Confidence            00  01122356789999999987754332 2456899998886654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.4e-14  Score=116.42  Aligned_cols=215  Identities=13%  Similarity=0.097  Sum_probs=133.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .+|+++||||++.||++++++|+ +.|++|++++|++.+..       ....++..+++|++|+++++++++.       
T Consensus        10 ~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999999 78999999999865432       1234688899999999887776643       


Q ss_pred             cCceeEEeecccc---cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           93 LEDVTHIFWVTWA---SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        93 ~~~V~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      +|.++|.++....   +.+.++..+.+++|+.++..+.+.+...  ..+-..++.+++...+.+.               
T Consensus        89 iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~---------------  153 (255)
T d1fmca_          89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN---------------  153 (255)
T ss_dssp             CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC---------------
T ss_pred             CCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccc---------------
Confidence            4456666554322   2244555668999999999998877665  1122233444432121000               


Q ss_pred             CCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                       +.  ..+   |+.+|....         +.+..+++..+.||.|-.+......+  ..  ....+.+  ..|+.     
T Consensus       154 -~~--~~~---Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~--~e--~~~~~~~--~~pl~-----  216 (255)
T d1fmca_         154 -IN--MTS---YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVIT--PE--IEQKMLQ--HTPIR-----  216 (255)
T ss_dssp             -TT--CHH---HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCC--HH--HHHHHHH--TCSSC-----
T ss_pred             -cc--ccc---chhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCC--HH--HHHHHHh--cCCCC-----
Confidence             00  122   676555333         22222999999999886532111110  11  1111111  22321     


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                              -+.+++|+|.++++++..... ...|+.+.+.+|...
T Consensus       217 --------R~g~pedvA~~v~fL~S~~s~-~itG~~i~vDGG~~~  252 (255)
T d1fmca_         217 --------RLGQPQDIANAALFLCSPAAS-WVSGQILTVSGGGVQ  252 (255)
T ss_dssp             --------SCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTSCC
T ss_pred             --------CCcCHHHHHHHHHHHhCchhc-CCcCCEEEECcCccc
Confidence                    145778999999988754332 245689999888643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.58  E-value=7.6e-14  Score=114.64  Aligned_cols=217  Identities=15%  Similarity=0.058  Sum_probs=133.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+++||||++.||++++++|+ +.|++|++++|+..+..        ....++..+++|++|.++++++++.     
T Consensus         5 L~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999 68999999999865321        1234677899999999988777654     


Q ss_pred             --cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 --LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 --~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                        +|.++|.++...    .+.+.++..+.+++|+.++..+.+++...   ...-..++.+++...+.+            
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~------------  151 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP------------  151 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC------------
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhccc------------
Confidence              455666655432    22234555668999999998888887654   111223444443211100            


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                      .       |.  ...|..+|....         +....+++..+.|+.|..+...   ...........+..  ..|+  
T Consensus       152 ~-------~~--~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~---~~~~~~~~~~~~~~--~~pl--  215 (261)
T d1geea_         152 W-------PL--FVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA---EKFADPEQRADVES--MIPM--  215 (261)
T ss_dssp             C-------TT--CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH---HHHHSHHHHHHHHT--TCTT--
T ss_pred             C-------cc--ccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHh---hhcCCHHHHHHHHh--cCCC--
Confidence            0       01  112666555443         2221299999999988753111   00000001111111  2221  


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                 -.+..++|+|.++++++..... ...|+.+.+.+|..+
T Consensus       216 -----------~R~~~pediA~~v~fL~S~~s~-~itG~~i~vDGG~sl  252 (261)
T d1geea_         216 -----------GYIGEPEEIAAVAAWLASSEAS-YVTGITLFADGGMTL  252 (261)
T ss_dssp             -----------SSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTGGG
T ss_pred             -----------CCCCCHHHHHHHHHHHhCchhc-CCcCCeEEECCCeeC
Confidence                       1255788999999988854332 245689999888643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.58  E-value=5.6e-14  Score=114.86  Aligned_cols=214  Identities=16%  Similarity=0.134  Sum_probs=133.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      .++|++|||||++.||+++++.|+ +.|++|++++|+++...      ....++.++++|++|.++++++++.       
T Consensus         4 L~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999 68999999999865432      1234788999999999988776654       


Q ss_pred             cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCc-cEEEEeecccccccccCCCcccccCCcC
Q 042242           93 LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKAL-KHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 ~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~-~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      +|.++|.++...    .+.+.++..+.+++|+.++..+.+++...  ..+. ..++.+++...+.+.             
T Consensus        83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~-------------  149 (251)
T d1zk4a1          83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD-------------  149 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC-------------
T ss_pred             ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC-------------
Confidence            455666655432    22345556668999999999999887655  1122 244444442221000             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------H-hcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------K-LAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~-~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                         +.  ...   |..+|....         . .... +++..+.|+.|..+......   ...   .........|   
T Consensus       150 ---~~--~~~---Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~---~~~---~~~~~~~~~p---  212 (251)
T d1zk4a1         150 ---PS--LGA---YNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP---GAE---EAMSQRTKTP---  212 (251)
T ss_dssp             ---TT--CHH---HHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST---THH---HHHTSTTTCT---
T ss_pred             ---CC--chh---HHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcC---CHH---HHHHHHhCCC---
Confidence               00  112   666554322         1 1223 99999999988653111110   000   0000001112   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                +-.+.+++|+|.++++++..... ...|+.+.+.+|.
T Consensus       213 ----------l~R~~~pedvA~~v~fL~S~~s~-~itG~~i~vDGG~  248 (251)
T d1zk4a1         213 ----------MGHIGEPNDIAYICVYLASNESK-FATGSEFVVDGGY  248 (251)
T ss_dssp             ----------TSSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTG
T ss_pred             ----------CCCCcCHHHHHHHHHHHhCchhC-CCcCcEEEECccc
Confidence                      11256889999999998754432 2456889888874

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.58  E-value=5.3e-14  Score=115.57  Aligned_cols=218  Identities=11%  Similarity=0.029  Sum_probs=132.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .++|++|||||++.||+++++.|+ +.|++|++.+|++.+..       ....++..+++|++|.++++++++.      
T Consensus         6 L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            467999999999999999999999 68999999999866532       1234577889999999887766543      


Q ss_pred             --cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        +|.++|.++...    .+.+.++....+++|+.++..+.+++...  ..+--+++.+++.......            
T Consensus        85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~------------  152 (259)
T d2ae2a_          85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV------------  152 (259)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC------------
T ss_pred             CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccccc------------
Confidence              344666655432    22334555568999999999888887654  2223345555442121000            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +.  ..+   |..+|....         +. .+ +++..+.|+.|-.+.................+..  ..|+  
T Consensus       153 ----~~--~~~---Y~asKaal~~lt~~lA~el~~~g-IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~--~~pl--  218 (259)
T d2ae2a_         153 ----PY--EAV---YGATKGAMDQLTRCLAFEWAKDN-IRVNGVGPGVIATSLVEMTIQDPEQKENLNKLID--RCAL--  218 (259)
T ss_dssp             ----TT--CHH---HHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHH--TSTT--
T ss_pred             ----cc--ccc---hHHHHHHHHHHHHHHHHHhCcCc-eEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHh--cCCC--
Confidence                00  112   666554332         22 23 9999999998865311100000000000011111  2221  


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                 -.+..++|+|.++++++..... ...|+.+.+.+|-.
T Consensus       219 -----------~R~g~pedvA~~v~fL~S~~s~-~itG~~i~VDGG~~  254 (259)
T d2ae2a_         219 -----------RRMGEPKELAAMVAFLCFPAAS-YVTGQIIYVDGGLM  254 (259)
T ss_dssp             -----------CSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTGG
T ss_pred             -----------CCCcCHHHHHHHHHHHhCchhC-CCcCcEEEECCCeE
Confidence                       1255788999999988754332 24568888887743

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-14  Score=118.32  Aligned_cols=219  Identities=15%  Similarity=0.103  Sum_probs=134.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ..+|++|||||++.||+++++.|+ +.|++|++++|+++...   .+..+..++.+|++|.++++++++.       +|.
T Consensus         4 l~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi   82 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDC   82 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            468999999999999999999999 68999999999876533   2346788999999999988777654       455


Q ss_pred             eeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           96 VTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        96 V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      ++|.++....     ..+.++..+.+++|+.++..+++++.+. ..+--.++.+++...+...                +
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~----------------~  146 (250)
T d1ydea1          83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ----------------A  146 (250)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC----------------T
T ss_pred             EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccc----------------c
Confidence            6776653221     2234455678999999999998887765 1111244444432221110                0


Q ss_pred             CCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchh-hHHHHHHHHhhhCCCceeeCCchh
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFL-GCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      .  ..+   |..+|....         +....+++..+.||.|-.+......... .....+.....  ..|+       
T Consensus       147 ~--~~~---Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--~~pl-------  212 (250)
T d1ydea1         147 Q--AVP---YVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGML--AQPL-------  212 (250)
T ss_dssp             T--CHH---HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHH--TSTT-------
T ss_pred             C--cch---hHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHh--cCCC-------
Confidence            0  122   666555333         2221299999999988642100000000 00011111110  1221       


Q ss_pred             hhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          240 IWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       240 ~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                            -.+..++|+|.++++++.+ . ....|+.+.+.+|..+
T Consensus       213 ------~R~g~p~eva~~v~fL~Sd-a-~~itG~~i~vDGG~~l  248 (250)
T d1ydea1         213 ------GRMGQPAEVGAAAVFLASE-A-NFCTGIELLVTGGAEL  248 (250)
T ss_dssp             ------SSCBCHHHHHHHHHHHHHH-C-TTCCSCEEEESTTTTS
T ss_pred             ------CCCCCHHHHHHHHHHHhCc-c-CCCcCCeEEECCCccc
Confidence                  1255788999999988743 2 2245689989888654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=1.3e-13  Score=112.57  Aligned_cols=216  Identities=14%  Similarity=0.042  Sum_probs=133.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|+++||||++.||+.+++.|+ +.|++|++++|+.++..        ....++..+++|++|.++++++++.     
T Consensus         3 l~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            467999999999999999999999 68999999999876532        1124677889999999988776654     


Q ss_pred             --cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        +|.++|.|+....    +.+.++..+.+++|+.++..+.+++...  ..+--+++.+++......           +.
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~-----------~~  150 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV-----------TM  150 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC-----------CS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc-----------cC
Confidence              4557777654322    2244556668999999999999887765  222334444443211100           00


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                            ....+   |+.+|...+         +....+++..+.||.+-.+....   ..........+.+  ..|+   
T Consensus       151 ------~~~~~---Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~---~~~~~~~~~~~~~--~~pl---  213 (251)
T d1vl8a_         151 ------PNISA---YAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEA---VFSDPEKLDYMLK--RIPL---  213 (251)
T ss_dssp             ------SSCHH---HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHH---HHTCHHHHHHHHH--TCTT---
T ss_pred             ------ccccc---hHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHh---ccCCHHHHHHHHh--cCCC---
Confidence                  00112   776655333         22212999999999987632111   0000011111111  2221   


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                -.+..++|+|.++++++..... ...|+.+.+.+|.
T Consensus       214 ----------~R~~~pedvA~~v~fL~S~~a~-~itG~~i~vDGG~  248 (251)
T d1vl8a_         214 ----------GRTGVPEDLKGVAVFLASEEAK-YVTGQIIFVDGGW  248 (251)
T ss_dssp             ----------SSCBCGGGGHHHHHHHHSGGGT-TCCSCEEEESTTG
T ss_pred             ----------CCCCCHHHHHHHHHHHhCchhC-CCcCcEEEeCcCe
Confidence                      1245678889999888754432 2456889888874

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.57  E-value=7.4e-14  Score=114.56  Aligned_cols=218  Identities=14%  Similarity=0.073  Sum_probs=128.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      .++|+||||||++.||++++++|+ +.|++|++++|++.+..       .....+.++.+|+++.+++++.++.      
T Consensus         4 L~gK~alITGas~GIG~aia~~la-~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELA-GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD   82 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999 68999999999875532       1234577889999999987666532      


Q ss_pred             --cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        .|.++|.++...    .+.+.++....+++|+.++..+.+++...  .....+++.+++.....+.            
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~------------  150 (258)
T d1ae1a_          83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL------------  150 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC------------
T ss_pred             CCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccccc------------
Confidence              122455444322    12234555668999999999998887654  2233445544432121000            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHH-HHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCL-CVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  234 (303)
                          +.  ...   |+.+|...+         +.+..+++..+.|+.+..+............ .....+..  ..|   
T Consensus       151 ----~~--~~~---Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--~~p---  216 (258)
T d1ae1a_         151 ----PS--VSL---YSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIV--KTP---  216 (258)
T ss_dssp             ----TT--CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHH--HST---
T ss_pred             ----cc--chh---HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHh--cCC---
Confidence                00  112   555443322         2222299999999999874322111100000 00011111  112   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                +-.+.+.+|+|.++++++.+... ...|+.+.+.+|.
T Consensus       217 ----------lgR~~~pediA~~v~fL~S~~s~-~itG~~i~vDGG~  252 (258)
T d1ae1a_         217 ----------MGRAGKPQEVSALIAFLCFPAAS-YITGQIIWADGGF  252 (258)
T ss_dssp             ----------TCSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTG
T ss_pred             ----------CCCCcCHHHHHHHHHHHhChhhC-CCcCcEEEeCCCe
Confidence                      11256889999999998854332 1456888888774

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.57  E-value=5.3e-14  Score=115.03  Aligned_cols=214  Identities=12%  Similarity=0.058  Sum_probs=133.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      .++|++|||||++.||+++++.|+ +.|++|++++|++++..    ....++.++++|++|.++++++++.       +|
T Consensus         3 L~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCcc
Confidence            468999999999999999999999 68999999999876542    1224678899999999988777654       45


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEEC  168 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~  168 (303)
                      .++|.|+....    ..+.++..+.+++|+.++..+.+++.+.  ..+--+++.+++...+...                
T Consensus        82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~----------------  145 (254)
T d1hdca_          82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL----------------  145 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------------
T ss_pred             EEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccc----------------
Confidence            56776654332    2234555568999999999999887654  2223455555543222000                


Q ss_pred             CCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchh
Q 042242          169 PRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTRE  239 (303)
Q Consensus       169 ~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  239 (303)
                      +.  ...   |..+|....         +.+..+++..+.|+.+..+..       ..      ........ ....   
T Consensus       146 ~~--~~~---Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~-------~~------~~~~~~~~-~~~~---  203 (254)
T d1hdca_         146 AL--TSS---YGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT-------AE------TGIRQGEG-NYPN---  203 (254)
T ss_dssp             TT--CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-------HH------HTCCCSTT-SCTT---
T ss_pred             cc--hhh---HHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccc-------hh------cCHHHHHH-HHhC---
Confidence            00  122   666555433         222129999999998864210       00      00000000 0000   


Q ss_pred             hhhhhcccC-ccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          240 IWEEYCLDG-SDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       240 ~~~~~~~~~-~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                         ..+-.+ ..++|+|.++++++..... ...|+.+.+.+|..
T Consensus       204 ---~pl~R~g~~PedvA~~v~fL~S~~a~-~itG~~i~vDGG~t  243 (254)
T d1hdca_         204 ---TPMGRVGNEPGEIAGAVVKLLSDTSS-YVTGAELAVDGGWT  243 (254)
T ss_dssp             ---STTSSCB-CHHHHHHHHHHHHSGGGT-TCCSCEEEESTTTT
T ss_pred             ---CCCCCCCCCHHHHHHHHHHHhchhhC-CCCCceEEeCCCcc
Confidence               111112 3578999999988854332 24568999988863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.57  E-value=3.6e-14  Score=116.49  Aligned_cols=221  Identities=12%  Similarity=0.031  Sum_probs=134.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------c--cCCCeEEEEecCCCHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------I--QSSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~--~~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      +.+|+++||||++.||+.+++.|+ +.|++|++++|++.+..       .  ...++..+++|++|+++++++++.    
T Consensus         2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            357999999999999999999999 68999999999875432       1  123577889999999988776654    


Q ss_pred             ---cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           93 ---LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ---~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                         +|.++|.|+...     ...+.++..+.+++|+.++..+.+++...  ..+--+++.+++...+.+.          
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~----------  150 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI----------  150 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC----------
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCC----------
Confidence               455666665322     12244555679999999999999887554  2223344454442221000          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchh---hHHHHHHHHhhhCCC
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFL---GCLCVYGAVCKHLNL  230 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~  230 (303)
                            +.  ..+   |..+|....         +.+..+++..+.||.+..+.........   ........+..  ..
T Consensus       151 ------~~--~~~---Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~--~~  217 (258)
T d1iy8a_         151 ------GN--QSG---YAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQ--VN  217 (258)
T ss_dssp             ------SS--BHH---HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHT--TC
T ss_pred             ------CC--chH---HHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHh--cC
Confidence                  00  122   666554333         2221299999999988753110000000   00000000000  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      |             +-.+.+++|+|.++++++..... ...|+.+.+.+|..-+
T Consensus       218 p-------------l~R~~~p~dvA~~v~fL~S~~s~-~itG~~i~VDGG~saa  257 (258)
T d1iy8a_         218 P-------------SKRYGEAPEIAAVVAFLLSDDAS-YVNATVVPIDGGQSAA  257 (258)
T ss_dssp             T-------------TCSCBCHHHHHHHHHHHTSGGGT-TCCSCEEEESTTTTTB
T ss_pred             C-------------CCCCcCHHHHHHHHHHHhCchhc-CCcCceEEcCcchhcc
Confidence            2             11255788999999998854332 2456899998886543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.57  E-value=7.8e-14  Score=114.72  Aligned_cols=224  Identities=13%  Similarity=0.076  Sum_probs=132.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      ++|++|||||++.||+++++.|+ +.|++|++++|+.....         ....++.++.+|++|.++++++++.     
T Consensus         3 ~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            57899999999999999999999 68999999999864321         1123678889999999988887754     


Q ss_pred             --cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 --LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 --~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                        +|.++|.|+...    .+.+.++..+.+++|+.++..+++++...  ..+.-+++.+++...+.+.            
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~------------  149 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS------------  149 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceecc------------
Confidence              455677765433    22344556679999999998888887665  1223345554442221000            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                          +.  ..+   |..+|....        ..... +++..+.||.|-.+......   .........    .......
T Consensus       150 ----~~--~~~---Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~---~~~~~~~~~----~~~~~~~  213 (260)
T d1x1ta1         150 ----AN--KSA---YVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQI---SALAEKNGV----DQETAAR  213 (260)
T ss_dssp             ----TT--CHH---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------
T ss_pred             ----CC--cch---hhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhh---hhhhhhcCC----ChHHHHH
Confidence                00  122   676655433        22233 99999999988763211110   000000000    0000000


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ...... ..+..+.+++|+|.++++++...... ..|+.+.+.+|.
T Consensus       214 ~~~~~~-~Pl~R~g~pediA~~v~fL~S~~a~~-itG~~i~vDGG~  257 (260)
T d1x1ta1         214 ELLSEK-QPSLQFVTPEQLGGTAVFLASDAAAQ-ITGTTVSVDGGW  257 (260)
T ss_dssp             -CHHHH-CTTCCCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTG
T ss_pred             HHHHhc-CCCCCCcCHHHHHHHHHHHhChhhCC-CcCCEEEECcch
Confidence            000000 12233668899999999988544322 456889888874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=119.35  Aligned_cols=221  Identities=13%  Similarity=0.141  Sum_probs=131.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      .+|++|||||++.||+++++.|+ +.|++|++++|+.++..     .    ...++.++++|++|.++++++++.     
T Consensus         2 ~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999999 68999999999875421     1    123577899999999988877754     


Q ss_pred             --cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC-----CccEEEEeecccccccccCCCcccccCCcC
Q 042242           93 --LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK-----ALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        93 --~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-----~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                        +|.++|.|+..  ....++  +.+++|+.++..+...+.+...     .-.+++.+++...+.+.             
T Consensus        81 G~iDilVnnAg~~--~~~~~~--~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~-------------  143 (254)
T d2gdza1          81 GRLDILVNNAGVN--NEKNWE--KTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV-------------  143 (254)
T ss_dssp             SCCCEEEECCCCC--CSSSHH--HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-------------
T ss_pred             CCcCeeccccccc--ccccch--heeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC-------------
Confidence              34466665543  222333  3789999888877777665411     11345555543221000             


Q ss_pred             cCCCCCCCCccchHHHHHHH-----------HHHhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          166 EECPRVSKSNNFYYVLEDLL-----------KEKLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~-----------~e~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                         +.  ..+   |..+|..           .|+....+++..+.||.|-.+......   ..    .....  ...  .
T Consensus       144 ---~~--~~~---Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~---~~----~~~~~--~~~--~  204 (254)
T d2gdza1         144 ---AQ--QPV---YCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIE---KE----ENMGQ--YIE--Y  204 (254)
T ss_dssp             ---TT--CHH---HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGG---CH----HHHGG--GGG--G
T ss_pred             ---CC--ccc---hHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhcc---cc----ccccc--cHH--H
Confidence               00  112   6654431           223322299999999888542100000   00    00000  000  0


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCccHHhh
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEI  288 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s~~e~  288 (303)
                      ....... ..+..+.+.+|+|.++++++.++..   .|+.+.+.+|..+.++|+
T Consensus       205 ~~~~~~~-~p~~r~~~pedvA~~v~fL~s~~~i---tG~~i~VdGG~~~~~~~~  254 (254)
T d2gdza1         205 KDHIKDM-IKYYGILDPPLIANGLITLIEDDAL---NGAIMKITTSKGIHFQDY  254 (254)
T ss_dssp             HHHHHHH-HHHHCCBCHHHHHHHHHHHHHCTTC---SSCEEEEETTTEEEECCC
T ss_pred             HHHHHhc-CCCCCCcCHHHHHHHHHHHHcCCCC---CCCEEEECCCCeeecccC
Confidence            0000000 1122356788999999999876653   359999999987777653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=5.7e-14  Score=115.34  Aligned_cols=217  Identities=12%  Similarity=0.023  Sum_probs=125.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      ++++|+++||||++.||+.+++.|+ +.|++|++++|++.+..       ....++..+.+|+++.++++++++.     
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            3468999999999999999999999 68999999999876532       1234688899999999887665542     


Q ss_pred             ---cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           93 ---LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ---~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                         +|.++|.++...    .+.+.++..+.+++|+.++..+.+++...  ..+--+++.+++...+.+.           
T Consensus        84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~-----------  152 (259)
T d1xq1a_          84 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA-----------  152 (259)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------------
T ss_pred             CCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccc-----------
Confidence               344666655432    22344555668999999999998887654  1222344444432111000           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                           +  ....   |..+|....         +....+++..+.||.|-.+......   ... ....+.  ...|   
T Consensus       153 -----~--~~~~---Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~---~~~-~~~~~~--~~~p---  213 (259)
T d1xq1a_         153 -----S--VGSI---YSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY---DDE-FKKVVI--SRKP---  213 (259)
T ss_dssp             ---------CCH---HHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------
T ss_pred             -----c--cccc---ccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhc---hHH-HHHHHH--hCCC---
Confidence                 0  0122   666554333         2221299999999988763211110   000 000000  0112   


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                                +-.+..++|+|.++++++..... ...|+.+.+.+|..+
T Consensus       214 ----------l~R~~~pedvA~~v~fL~S~~s~-~iTG~~i~vDGG~s~  251 (259)
T d1xq1a_         214 ----------LGRFGEPEEVSSLVAFLCMPAAS-YITGQTICVDGGLTV  251 (259)
T ss_dssp             --------------CCGGGGHHHHHHHTSGGGT-TCCSCEEECCCCEEE
T ss_pred             ----------CCCCcCHHHHHHHHHHHhCchhc-CCcCcEEEeCCCEEC
Confidence                      11245677889999888754322 245688888887543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.56  E-value=5.7e-13  Score=110.22  Aligned_cols=223  Identities=14%  Similarity=0.004  Sum_probs=134.7

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      .+.++.+|++|||||++.||+++++.|+ ..|++|++++|+..+..        ....++.++++|++|++++.+.++.+
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH
Confidence            4455678999999999999999999999 68999999998865421        12346888999999999887776543


Q ss_pred             -------CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           94 -------EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        94 -------~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                             |.++|.++...    ......+..+.+++|+.++..+++++.....+-.+++.+++....  .          
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~--~----------  158 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ--A----------  158 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT--C----------
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc--c----------
Confidence                   43445543322    223345555689999999999999988763333344443321110  0          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCC--------CccchhhHHHHHHHH
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHR--------SLYNFLGCLCVYGAV  224 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~--------~~~~~~~~~~~~~~~  224 (303)
                            .  +......|+.+|...+         +. .+ +++..+.||.+-.+...        ...............
T Consensus       159 ------~--~~~~~~~Y~asKaal~~ltk~lA~e~~~~g-IrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (272)
T d1g0oa_         159 ------K--AVPKHAVYSGSKGAIETFARCMAIDMADKK-ITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAA  229 (272)
T ss_dssp             ------S--SCSSCHHHHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHH
T ss_pred             ------c--cccchhhHHHHHHHHHHHHHHHHHHhchhC-eEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHH
Confidence                  0  0111122666554332         22 23 99999999988652100        000000000000000


Q ss_pred             hhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          225 CKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       225 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      .+  ..|             +--+...+|+|.++++++..... ...|+...+.+|..
T Consensus       230 ~~--~~P-------------lgR~~~peevA~~v~fL~s~~s~-~itG~~i~vDGG~~  271 (272)
T d1g0oa_         230 VQ--WSP-------------LRRVGLPIDIARVVCFLASNDGG-WVTGKVIGIDGGAC  271 (272)
T ss_dssp             HH--SCT-------------TCSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTCC
T ss_pred             Hc--cCC-------------CCCCcCHHHHHHHHHHHhCchhc-CccCceEeECCCCC
Confidence            00  112             12256889999999998865432 24568888888753

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=3e-13  Score=110.96  Aligned_cols=216  Identities=13%  Similarity=0.099  Sum_probs=127.2

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      +++|++|||||+|  .||++++++|+ +.|++|++.+|++....      .......++++|++|.++++++++.     
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF   84 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc
Confidence            4689999999998  79999999999 68999988888754321      1234577899999999988877654     


Q ss_pred             --cCceeEEeecc--------cccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccC
Q 042242           93 --LEDVTHIFWVT--------WASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 --~~~V~~~~~~~--------~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                        +|.++|.++..        ..+....+....+++|+.++..+++++.....+-.+++.+++.......          
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~----------  154 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV----------  154 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC----------
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCC----------
Confidence              34455554431        1222334445578999999999988877652222334444432111000          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            +.  ...   |..+|...+         +....+++..+.|+.+..+........ ..  ....+.+  ..|+ 
T Consensus       155 ------~~--~~~---Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~-~~--~~~~~~~--~~pl-  217 (256)
T d1ulua_         155 ------PK--YNV---MAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGF-TK--MYDRVAQ--TAPL-  217 (256)
T ss_dssp             ------TT--CHH---HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------C-HH--HHHHHHH--HSTT-
T ss_pred             ------CC--chH---HHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhh-HH--HHHHHHh--cCCC-
Confidence                  00  112   666655433         222129999999998876422211100 01  0111111  1221 


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                  -.+..++|+|.++++++..... ...|+.+.+.+|..
T Consensus       218 ------------~R~~~pedvA~~v~fL~S~~s~-~itG~~i~VDGG~~  253 (256)
T d1ulua_         218 ------------RRNITQEEVGNLGLFLLSPLAS-GITGEVVYVDAGYH  253 (256)
T ss_dssp             ------------SSCCCHHHHHHHHHHHHSGGGT-TCCSCEEEESTTGG
T ss_pred             ------------CCCcCHHHHHHHHHHHhCchhC-CccCCeEEECcCEe
Confidence                        1255788999999988765432 24568898888754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.55  E-value=1.4e-13  Score=113.19  Aligned_cols=219  Identities=13%  Similarity=0.099  Sum_probs=130.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhcc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTLL----   93 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~~----   93 (303)
                      .++|++|||||++.||+++++.|+ +.|++|++++|+..+..        ....++..+++|++|+++++++++.+    
T Consensus         7 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999 68999999999876542        11346788999999999887777543    


Q ss_pred             ---CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCC
Q 042242           94 ---EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        94 ---~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                         |.++|.++...    ...+..+..+.+++|+.++..+.+++...   ...-..++..++...+.....        .
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~--------~  157 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS--------S  157 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE--------E
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccc--------c
Confidence               33555554332    22234455568999999998888876553   112222222222211111100        0


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                      ..   +   ......|..+|....         +. .+ +++..+.||.|-.+.....   ....  ......  ..|+.
T Consensus       158 ~~---~---~~~~~~Y~asKaal~~lt~~lA~el~~~g-IrvN~I~PG~i~T~~~~~~---~~~~--~~~~~~--~~pl~  223 (260)
T d1h5qa_         158 LN---G---SLTQVFYNSSKAACSNLVKGLAAEWASAG-IRVNALSPGYVNTDQTAHM---DKKI--RDHQAS--NIPLN  223 (260)
T ss_dssp             TT---E---ECSCHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSBCCGGGGGS---CHHH--HHHHHH--TCTTS
T ss_pred             cc---c---CccccchhhhhhhHHHHHHHHHHHhchhC-eEEeecCCCcccCcchhcc---CHHH--HHHHHh--cCCCC
Confidence            00   0   000122666555433         22 23 9999999999865321111   0111  011111  22211


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                   .+..++|+|.++++++..... ...|+.+.+.+|.
T Consensus       224 -------------R~g~pedvA~~v~fL~S~~s~-~itG~~i~VDGG~  257 (260)
T d1h5qa_         224 -------------RFAQPEEMTGQAILLLSDHAT-YMTGGEYFIDGGQ  257 (260)
T ss_dssp             -------------SCBCGGGGHHHHHHHHSGGGT-TCCSCEEEECTTG
T ss_pred             -------------CCcCHHHHHHHHHHHhcchhC-CCcCceEEECCCe
Confidence                         145677889998888754332 2456889888875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=3e-14  Score=117.47  Aligned_cols=220  Identities=14%  Similarity=0.092  Sum_probs=128.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-----cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-----QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-----~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      +++|++|||||++.||++++++|+ +.|++|++++|+..+..     .     ...++..+++|++|.++++++++.   
T Consensus         3 l~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            568999999999999999999999 68999999999875432     0     123588999999999988777654   


Q ss_pred             ----cCceeEEeecccc--------cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecc-cccccccCCCcc
Q 042242           93 ----LEDVTHIFWVTWA--------SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGM-KHYVSLQGLPEE  158 (303)
Q Consensus        93 ----~~~V~~~~~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~-~~y~~~~~~~g~  158 (303)
                          +|.++|.++....        ..+.++....+++|+.++..+.+++.+. ..+-..++.+++. ..+      .  
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~------~--  153 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL------H--  153 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS------S--
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccc------c--
Confidence                4556776654321        1133445568999999999998887765 1111222222221 010      0  


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCcc-c--hhhHHH-HHHHHh
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLY-N--FLGCLC-VYGAVC  225 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~-~--~~~~~~-~~~~~~  225 (303)
                          +       .|.  ...|+.+|....         +....+++..+.||.|-.+...... .  ...... ....+.
T Consensus       154 ----~-------~~~--~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~  220 (264)
T d1spxa_         154 ----A-------TPD--FPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMK  220 (264)
T ss_dssp             ----C-------CTT--SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHH
T ss_pred             ----c-------CCC--chhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHH
Confidence                0       001  112666554333         2221299999999998753211100 0  000000 000011


Q ss_pred             hhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          226 KHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      +  ..|             +--+..++|+|.++++++.++......|+.+.+.+|..
T Consensus       221 ~--~~P-------------l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~s  262 (264)
T d1spxa_         221 E--CVP-------------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS  262 (264)
T ss_dssp             H--HCT-------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred             h--cCC-------------CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChh
Confidence            1  111             11255788999999998864422113468898888753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.54  E-value=2.9e-13  Score=109.89  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=131.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhcc-------C
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTLL-------E   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~-------~   94 (303)
                      ..+|++|||||++.||+.+++.|+ +.|++|++++|+..+..    ....++.++++|++++++++++++.+       |
T Consensus         3 l~gK~alItGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFA-REGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            357999999999999999999999 78999999999876542    22346788999999999887776543       4


Q ss_pred             ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCC
Q 042242           95 DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPR  170 (303)
Q Consensus        95 ~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~  170 (303)
                      .++|.++....    +.+..+..+.+++|+.++..+.+++.....+-..+...++......           |      .
T Consensus        82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~-----------~------~  144 (241)
T d2a4ka1          82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA-----------F------G  144 (241)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-----------H------H
T ss_pred             Eeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc-----------c------C
Confidence            46665544322    2234445568999999999999998776333333333222111000           0      0


Q ss_pred             CCCCccchHHH---HHHHHHHhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcc
Q 042242          171 VSKSNNFYYVL---EDLLKEKLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCL  246 (303)
Q Consensus       171 ~p~~~~~~y~~---~k~~~e~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  246 (303)
                      .+.+...+.+.   .+.+....... +++.++.||.+-.+....   + ..- .+....+  ..|+             -
T Consensus       145 ~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~---~-~~~-~~~~~~~--~~p~-------------~  204 (241)
T d2a4ka1         145 LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG---L-PPW-AWEQEVG--ASPL-------------G  204 (241)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT---S-CHH-HHHHHHH--TSTT-------------C
T ss_pred             ccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh---h-hHh-HHHHHHh--CCCC-------------C
Confidence            00011111222   23333222233 999999999886532111   1 111 1111111  1221             1


Q ss_pred             cCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          247 DGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       247 ~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      -+..++|+|.++++++.+.... ..|+.+.+.+|..
T Consensus       205 r~~~p~dva~~v~fL~S~~s~~-itG~~i~vDGG~s  239 (241)
T d2a4ka1         205 RAGRPEEVAQAALFLLSEESAY-ITGQALYVDGGRS  239 (241)
T ss_dssp             SCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTTT
T ss_pred             CCcCHHHHHHHHHHHhcchhCC-CcCceEEeCCCcc
Confidence            1557899999999988544321 4568888888864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.54  E-value=6.9e-14  Score=115.87  Aligned_cols=222  Identities=13%  Similarity=0.060  Sum_probs=131.3

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-----cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-----QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-----~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      ..+|+++||||++.||+++++.|+ +.|++|++++|++++..     .     ...++..+.+|++|.++++++++.   
T Consensus         2 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            357999999999999999999999 68999999999865432     1     123578899999999988776654   


Q ss_pred             ----cCceeEEeeccccc------CChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccc
Q 042242           93 ----LEDVTHIFWVTWAS------QFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 ----~~~V~~~~~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                          +|.++|.++.....      .+.++..+.+++|+.++..+.+++...  ..+-..++..++...+.+         
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~---------  151 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA---------  151 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC---------
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhcccc---------
Confidence                35566665543221      123345568999999999998887765  122233333332111100         


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCc-cchhhHHHHHHHHhhh-CC
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSL-YNFLGCLCVYGAVCKH-LN  229 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~-~~  229 (303)
                                .|.  ...|+.+|....         +....+++..+.||.|-.+..... ............+... ..
T Consensus       152 ----------~~~--~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (274)
T d1xhla_         152 ----------HSG--YPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC  219 (274)
T ss_dssp             ----------CTT--SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT
T ss_pred             ----------CCC--CceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcC
Confidence                      001  112666554332         222129999999999875311100 0000000000111110 12


Q ss_pred             CceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          230 LPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       230 ~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                      .|+             -.+..++|+|.++++++..+......|+.+.+.+|..
T Consensus       220 iPl-------------gR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~  259 (274)
T d1xhla_         220 IPV-------------GHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST  259 (274)
T ss_dssp             CTT-------------SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred             CCC-------------CCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence            221             1255789999999988753222113468999988864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.54  E-value=4.7e-14  Score=116.00  Aligned_cols=158  Identities=12%  Similarity=0.052  Sum_probs=106.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc------
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL------   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~------   92 (303)
                      +.+|+++||||++.||+++++.|+ +.|++|++++|++....       ....++..+.+|++|.++++++++.      
T Consensus         3 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999 68999999999865432       1234678899999999888776654      


Q ss_pred             -cCceeEEeeccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 -LEDVTHIFWVTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 -~~~V~~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                       +|.++|.++...     .+.+.++....+++|+.++..+.+++...  ..+--+++.+++...+.+.            
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~------------  149 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP------------  149 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC------------
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCC------------
Confidence             444666655322     22344556678999999999998887654  2233445555543222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLG  205 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G  205 (303)
                          +.  ..+   |..+|....         +....+++..+.|+.|-.
T Consensus       150 ----~~--~~~---Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T  190 (260)
T d1zema1         150 ----PN--MAA---YGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGP  190 (260)
T ss_dssp             ----TT--BHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCS
T ss_pred             ----cc--hHH---HHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccC
Confidence                00  112   666554333         222129999999998875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.54  E-value=8.8e-14  Score=115.15  Aligned_cols=224  Identities=11%  Similarity=0.064  Sum_probs=130.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-----cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-----QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-----~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      +++|++|||||++.||+++++.|+ +.|++|++++|++.+..     .     ...++..+++|++|.++++++++.   
T Consensus         3 L~gK~alVTGas~GIG~aia~~la-~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999 68999999999875432     1     113578899999999988776654   


Q ss_pred             ----cCceeEEeeccccc--------CChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeec-ccccccccCCCcc
Q 042242           93 ----LEDVTHIFWVTWAS--------QFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTG-MKHYVSLQGLPEE  158 (303)
Q Consensus        93 ----~~~V~~~~~~~~~~--------~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~-~~~y~~~~~~~g~  158 (303)
                          +|.++|.++.....        .......+.+++|+.++..+.+++... ..+--.++.+++ ....         
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~---------  152 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP---------  152 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS---------
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc---------
Confidence                45566665543221        122234458899999999998887765 111112222222 1010         


Q ss_pred             cccCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHH-Hhh-h
Q 042242          159 KQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGA-VCK-H  227 (303)
Q Consensus       159 ~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~-~  227 (303)
                         .+       .|.  ...|+.+|....         +....+++..+.||.|-.+................. ... .
T Consensus       153 ---~~-------~~~--~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~  220 (272)
T d1xkqa_         153 ---QA-------QPD--FLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHK  220 (272)
T ss_dssp             ---SC-------CCS--SHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred             ---cC-------CCC--cchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHh
Confidence               00       000  122666555332         222229999999998865311100000000001111 111 0


Q ss_pred             CCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCcc
Q 042242          228 LNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFT  284 (303)
Q Consensus       228 ~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~s  284 (303)
                      ...|+             -.+..++|+|.++++++..+......|+.+.+.+|..+.
T Consensus       221 ~~~Pl-------------gR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l~  264 (272)
T d1xkqa_         221 ECIPI-------------GAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSLV  264 (272)
T ss_dssp             TTCTT-------------SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC
T ss_pred             cCCCC-------------CCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHHh
Confidence            11221             125578899999999885432111345899998886543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.53  E-value=9.4e-14  Score=113.85  Aligned_cols=222  Identities=13%  Similarity=0.036  Sum_probs=130.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      |.+|||||++.||+++++.|+ +.|++|++++|++.+..       ....++..+++|++|.++++++++.       +|
T Consensus         2 KValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            567999999999999999999 68999999999876532       1234678899999999988776654       44


Q ss_pred             ceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           95 DVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        95 ~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      .++|.|+...    .+.+.++..+.+++|+.++..+++++...   ..+-..++.+++...+...               
T Consensus        81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~---------------  145 (255)
T d1gega_          81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN---------------  145 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------------
T ss_pred             EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccC---------------
Confidence            4666655432    22344555668999999999998886543   2233344544432221000               


Q ss_pred             CCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee-CCc
Q 042242          168 CPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF-GGT  237 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  237 (303)
                          |.  ...|..+|...+         +....+++..+.||.+-.+...   ......   ....   +.+... ...
T Consensus       146 ----~~--~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~---~~~~~~---~~~~---~~~~~~~~~~  210 (255)
T d1gega_         146 ----PE--LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA---EIDRQV---SEAA---GKPLGYGTAE  210 (255)
T ss_dssp             ----TT--BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH---HHHHHH---HHHH---TCCTTHHHHH
T ss_pred             ----cc--cccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHh---hhhhhh---Hhhh---cccchhHHHH
Confidence                01  112666555333         2221299999999988542100   000000   0000   000000 000


Q ss_pred             hhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          238 REIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      .... ..+-.+..++|+|.++++++..... ...|+.+.+.+|-.+
T Consensus       211 ~~~~-~pl~R~~~peevA~~v~fL~S~~a~-~itG~~i~vDGG~~~  254 (255)
T d1gega_         211 FAKR-ITLGRLSEPEDVAACVSYLASPDSD-YMTGQSLLIDGGMVF  254 (255)
T ss_dssp             HHTT-CTTCSCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESSSSSC
T ss_pred             HHhc-CCCCCCcCHHHHHHHHHHHhCchhC-CccCcEEEecCCEEe
Confidence            0000 1122256789999999988854432 245688988887543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.53  E-value=4.7e-13  Score=109.93  Aligned_cols=218  Identities=13%  Similarity=0.014  Sum_probs=131.5

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      .|..+|+||||||++.||+++++.|+ +.|++|++.+|+..+..        ....++..+.+|++|.+++++.++.   
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999 78999998877655431        1234678899999999988777654   


Q ss_pred             ----cCceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecc-cccccccCCCcccccCC
Q 042242           93 ----LEDVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGM-KHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        93 ----~~~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~-~~y~~~~~~~g~~~~~~  163 (303)
                          .|.++|.++....    ..+.......+++|+.+...+++.+..+..+-..++.+++. ..+              
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~--------------  146 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM--------------  146 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC--------------
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc--------------
Confidence                3446666554322    22344555689999999999999888762222223222221 000              


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hhc-CCcceEEecCCceeecCC--------C-CccchhhHHHHHHHH
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KLA-GKVAWSVHRPGLLLGSSH--------R-SLYNFLGCLCVYGAV  224 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~~-~~~~~~ilRp~~v~G~~~--------~-~~~~~~~~~~~~~~~  224 (303)
                           ...|..  ..|..+|...+         +.. + +++..+.||.+-.+..        . ..... ........+
T Consensus       147 -----~~~~~~--~~Y~asK~al~~l~r~lA~e~~~~g-IrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~-~~~~~~~~~  217 (259)
T d1ja9a_         147 -----TGIPNH--ALYAGSKAAVEGFCRAFAVDCGAKG-VTVNCIAPGGVKTDMFDENSWHYAPGGYKGM-PQEKIDEGL  217 (259)
T ss_dssp             -----CSCCSC--HHHHHHHHHHHHHHHHHHHHHGGGT-CEEEEEEECCBSSHHHHHHGGGTSTTCCTTC-CHHHHHHHH
T ss_pred             -----cCCCCc--hhHHHHHHHHHHHHHHHHHHHhhcC-eEEeccCcCCccChhhhhhhhhhhhhhcccC-CHHHHHHHH
Confidence                 000111  12666554332         222 3 9999999998864210        0 00000 000001111


Q ss_pred             hhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          225 CKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       225 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      .+  ..|             +..+...+|+|.++++++.+.... ..|+.+.+.+|.
T Consensus       218 ~~--~~p-------------l~R~g~p~eVa~~v~fL~S~~a~~-itG~~i~vDGG~  258 (259)
T d1ja9a_         218 AN--MNP-------------LKRIGYPADIGRAVSALCQEESEW-INGQVIKLTGGG  258 (259)
T ss_dssp             HH--TST-------------TSSCBCHHHHHHHHHHHHSGGGTT-CCSCEEEESTTC
T ss_pred             Hh--CCC-------------CCCCcCHHHHHHHHHHHhCchhcC-CcCceEEeCCCC
Confidence            11  112             122567889999999988765432 456888888764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-13  Score=113.64  Aligned_cols=215  Identities=13%  Similarity=0.078  Sum_probs=129.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c-------cCCCeEEEEecCCCHHHHHHHHhc-
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I-------QSSSYCFISCDLLNPLDIKRKLTL-   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~-------~~~~~~~~~~D~~~~~~l~~~~~~-   92 (303)
                      ..+|++|||||++.||++++++|+ +.|++|++++|+..+..     .       ...++..+++|++|.++++++++. 
T Consensus        10 L~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            468999999999999999999999 68999999999865431     0       123678899999999988777654 


Q ss_pred             ------cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccc
Q 042242           93 ------LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQ  160 (303)
Q Consensus        93 ------~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~  160 (303)
                            +|.++|.++...    ...+..+..+.+++|+.++..+.+++...  ..+-..++.+++....           
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~-----------  157 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-----------  157 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-----------
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc-----------
Confidence                  344666655432    22234455568999999999988887654  1111222222221000           


Q ss_pred             cCCcCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCC
Q 042242          161 VRFYDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNL  230 (303)
Q Consensus       161 ~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
                      .         .|.  ...|..+|...+         +. .+ +++..+.||.|..+...........- ......+  ..
T Consensus       158 ~---------~~~--~~~Y~asKaal~~ltk~lA~el~~~g-IrVN~I~PG~i~T~~~~~~~~~~~~~-~~~~~~~--~~  222 (297)
T d1yxma1         158 G---------FPL--AVHSGAARAGVYNLTKSLALEWACSG-IRINCVAPGVIYSQTAVENYGSWGQS-FFEGSFQ--KI  222 (297)
T ss_dssp             C---------CTT--CHHHHHHHHHHHHHHHHHHHHTGGGT-EEEEEEEECSBCCTGGGTTSGGGGGG-GGTTGGG--GS
T ss_pred             c---------ccc--cccchhHHHHHHHHHHHHHHHhcccC-ceEEEeeeCcCcCcchhhhccccCHH-HHHHHHh--cC
Confidence            0         001  112555444332         12 23 99999999998763211110000000 0000000  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      |             +-.+...+|+|.++++++..... ...|+.+.+.+|.
T Consensus       223 p-------------lgR~g~pedvA~~v~fL~Sd~s~-~iTG~~i~VDGG~  259 (297)
T d1yxma1         223 P-------------AKRIGVPEEVSSVVCFLLSPAAS-FITGQSVDVDGGR  259 (297)
T ss_dssp             T-------------TSSCBCTHHHHHHHHHHHSGGGT-TCCSCEEEESTTG
T ss_pred             C-------------CCCCcCHHHHHHHHHHHhCchhc-CcCCcEEEeCcCh
Confidence            1             12255788999999998854432 2456888888775

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.52  E-value=1.9e-13  Score=111.09  Aligned_cols=211  Identities=17%  Similarity=0.104  Sum_probs=130.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +.||||||++.||++++++|+ +.|++|++.+++.....        ....++.++++|++|.++++++++.       .
T Consensus         2 pV~lITGas~GIG~a~a~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLG-KAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            589999999999999999999 68999988776544321        1134677899999999988777654       3


Q ss_pred             CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcC
Q 042242           94 EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEE  167 (303)
Q Consensus        94 ~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~  167 (303)
                      |.++|.|+...    ...+..+..+.+++|+.++..+.+++.+.  ..+--+++.+++...+.+.               
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~---------------  145 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN---------------  145 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC---------------
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCC---------------
Confidence            44666654432    22344556669999999999998887765  1223455555543222110               


Q ss_pred             CCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          168 CPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       168 ~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                       +.  ...   |+.+|....        ..... +++..+.||.+-.+...   .+....  ...+..  ..|+      
T Consensus       146 -~~--~~~---Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~---~~~~~~--~~~~~~--~~pl------  206 (244)
T d1edoa_         146 -IG--QAN---YAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA---KLGEDM--EKKILG--TIPL------  206 (244)
T ss_dssp             -TT--CHH---HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH---TTCHHH--HHHHHT--SCTT------
T ss_pred             -CC--CHH---HHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHH---HhhHHH--HHHHHh--cCCC------
Confidence             00  112   666554333        22222 99999999888642111   000110  001111  1221      


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                             -.+..++|+|.++++++.++......|+.+.+.+|-
T Consensus       207 -------~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~  242 (244)
T d1edoa_         207 -------GRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI  242 (244)
T ss_dssp             -------CSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred             -------CCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCCe
Confidence                   125678999999999875554433456888888874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.52  E-value=1.3e-13  Score=112.74  Aligned_cols=218  Identities=11%  Similarity=0.059  Sum_probs=132.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cC
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LE   94 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~   94 (303)
                      +++|+++||||++.||+++++.|+ +.|++|++++|++....    ....+..++++|++|.++++++++.       .|
T Consensus         4 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            467999999999999999999999 68999999999875532    1235677889999999887776654       34


Q ss_pred             ceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcCcCCC
Q 042242           95 DVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECP  169 (303)
Q Consensus        95 ~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~  169 (303)
                      .++|.++...    ...+.++..+.+++|+.++..+++++.+. ..+--+++.+++...+.+.                +
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~----------------~  146 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPI----------------E  146 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCC----------------T
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCc----------------c
Confidence            4666665432    22334555668999999999888887765 2222445555442221000                0


Q ss_pred             CCCCCccchHHHHHHHHH---------Hh-cCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCch
Q 042242          170 RVSKSNNFYYVLEDLLKE---------KL-AGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTR  238 (303)
Q Consensus       170 ~~p~~~~~~y~~~k~~~e---------~~-~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  238 (303)
                      .  ..+   |..+|....         +. ++. +++..+.|+.+..+......+  ....  .....  ..+   +-  
T Consensus       147 ~--~~~---Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~--~~~~--~~~~~--~~~---~~--  210 (253)
T d1hxha_         147 Q--YAG---YSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP--KGVS--KEMVL--HDP---KL--  210 (253)
T ss_dssp             T--BHH---HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC--TTCC--HHHHB--CBT---TT--
T ss_pred             c--ccc---ccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCc--chhh--HHHHH--hCc---cc--
Confidence            0  112   666554332         22 233 899999999887521000000  0000  00000  000   00  


Q ss_pred             hhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          239 EIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       239 ~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                          ..+-.+..++|+|.++++++..... ...|+.+++.+|-
T Consensus       211 ----~~~gr~~~pedvA~~v~fL~S~~s~-~itG~~i~VDGG~  248 (253)
T d1hxha_         211 ----NRAGRAYMPERIAQLVLFLASDESS-VMSGSELHADNSI  248 (253)
T ss_dssp             ----BTTCCEECHHHHHHHHHHHHSGGGT-TCCSCEEEESSSC
T ss_pred             ----cccCCCCCHHHHHHHHHHHhChhhC-CCcCcEEEECccH
Confidence                1111255779999999998854432 2456889888774

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.51  E-value=1.7e-13  Score=112.50  Aligned_cols=215  Identities=16%  Similarity=0.123  Sum_probs=131.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +|.+|||||++.||+++++.|+ +.|++|++++|++++..       ....++..+++|++|+++++++++.       +
T Consensus         2 gKValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            4788999999999999999999 68999999999865432       1134678899999999988777654       3


Q ss_pred             CceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc----cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           94 EDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR----AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        94 ~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      |.++|.|+...    .+.+.++..+.+++|+.++..+.+++.+.    ......++.+++...+.+.             
T Consensus        81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~-------------  147 (257)
T d2rhca1          81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV-------------  147 (257)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCC-------------
T ss_pred             CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccccc-------------
Confidence            44666655432    22345556679999999999999988653    1223344444432221100             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchh------hHHHHHHHHhhhCCC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFL------GCLCVYGAVCKHLNL  230 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~  230 (303)
                         +.  ..+   |+.+|....        ..... +++..+.||.|-.+.........      ..-.....+.+  ..
T Consensus       148 ---~~--~~~---Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~  217 (257)
T d2rhca1         148 ---VH--AAP---YSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITA--RV  217 (257)
T ss_dssp             ---TT--CHH---HHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHT--TS
T ss_pred             ---cc--chh---HHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHh--cC
Confidence               00  122   676655433        22233 99999999988642100000000      00000000100  11


Q ss_pred             ceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          231 PFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       231 ~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      |             +-.+.+++|+|.++++++..... ...|+.+.+.+|
T Consensus       218 P-------------lgR~~~pedia~~v~fL~S~~s~-~itG~~i~vDGG  253 (257)
T d2rhca1         218 P-------------IGRYVQPSEVAEMVAYLIGPGAA-AVTAQALNVCGG  253 (257)
T ss_dssp             T-------------TSSCBCHHHHHHHHHHHTSGGGT-TCCSCEEEESTT
T ss_pred             C-------------CCCCcCHHHHHHHHHHHhCchhc-CCcCceEEECcC
Confidence            2             11256889999999988854332 245688888776

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=8.7e-13  Score=106.58  Aligned_cols=212  Identities=14%  Similarity=0.085  Sum_probs=128.8

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCH-HHHHHHHhccCceeEEeeccc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNP-LDIKRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~-~~l~~~~~~~~~V~~~~~~~~  104 (303)
                      +++|++|||||++.||+++++.|+ +.|++|++++|+++...  ..+.+++.+|+++. +.+.+.+..+|.++|.|+...
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~-~~Ga~V~~~~r~~~~l~--~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~~   78 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLS-QEGAEVTICARNEELLK--RSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGPK   78 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHH--HTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHH--hcCCcEEEcchHHHHHHHHHHhCCCcEEEecccccC
Confidence            367999999999999999999999 68999999999865432  34566788999773 445555566776777765432


Q ss_pred             c----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccch
Q 042242          105 A----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFY  178 (303)
Q Consensus       105 ~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~  178 (303)
                      .    +.+.++..+.+++|+.++..+.+++...  ..+...++.+++...+..                     ......
T Consensus        79 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~---------------------~~~~~~  137 (234)
T d1o5ia_          79 AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISP---------------------IENLYT  137 (234)
T ss_dssp             CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------------------CTTBHH
T ss_pred             CcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccccc---------------------cccccc
Confidence            2    2234555568899999998888887654  122234444443211100                     011112


Q ss_pred             HHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCc
Q 042242          179 YVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGS  249 (303)
Q Consensus       179 y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  249 (303)
                      |..+|....         +....+++..+.||.+-.+....   ..... ....+.+  ..|+             -.+.
T Consensus       138 Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~---~~~~~-~~~~~~~--~~pl-------------~R~~  198 (234)
T d1o5ia_         138 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE---LLSEE-KKKQVES--QIPM-------------RRMA  198 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH---HSCHH-HHHHHHT--TSTT-------------SSCB
T ss_pred             chhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhh---hcCHH-HHHHHHh--cCCC-------------CCCc
Confidence            555443322         22212999999999887632111   00110 0011111  2221             1256


Q ss_pred             cHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          250 DSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       250 ~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      .++|+|.++++++..... ...|+++.+.+|.
T Consensus       199 ~pediA~~v~fL~S~~s~-~itG~~i~vDGG~  229 (234)
T d1o5ia_         199 KPEEIASVVAFLCSEKAS-YLTGQTIVVDGGL  229 (234)
T ss_dssp             CHHHHHHHHHHHHSGGGT-TCCSCEEEESTTC
T ss_pred             CHHHHHHHHHHHhChhhc-CCcCcEEEECccc
Confidence            789999999988754332 2456899888875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.49  E-value=1.4e-13  Score=114.13  Aligned_cols=217  Identities=15%  Similarity=0.058  Sum_probs=125.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------cCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------LED   95 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~~~   95 (303)
                      ++|+||||||++.||+++++.|+ +.|++|++++|++++..    ....++..+.+|+++.++++++++.       +|.
T Consensus         4 ~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFV-AEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            57999999999999999999999 68999999999876532    1124678899999999888776653       444


Q ss_pred             eeEEeecccccC---------ChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           96 VTHIFWVTWASQ---------FASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        96 V~~~~~~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      ++|.|+......         ......+.+++|+.++..+.+++.+. ..+--.++.+++...+.+.             
T Consensus        83 lvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~-------------  149 (276)
T d1bdba_          83 LIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPN-------------  149 (276)
T ss_dssp             EECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTT-------------
T ss_pred             ccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCC-------------
Confidence            566554321111         11223458999999998888887654 1111233333322111000             


Q ss_pred             cCCCCCCCCccchHHHHHHHH---------HHhcCCcceEEecCCceeecCCCCcc-chhhHH----HHHHHHhhhCCCc
Q 042242          166 EECPRVSKSNNFYYVLEDLLK---------EKLAGKVAWSVHRPGLLLGSSHRSLY-NFLGCL----CVYGAVCKHLNLP  231 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~---------e~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~~----~~~~~~~~~~~~~  231 (303)
                         +.  ...   |..+|...         |+.+. +++..+.|+.|-.+-..... ......    .....+.  ...|
T Consensus       150 ---~~--~~~---Y~asKaal~~ltr~lA~ela~~-IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--~~~P  218 (276)
T d1bdba_         150 ---GG--GPL---YTAAKHAIVGLVRELAFELAPY-VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLK--SVLP  218 (276)
T ss_dssp             ---SS--CHH---HHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECCCCSCCCCCGGGC---------CHHHHHT--TTCT
T ss_pred             ---CC--Cch---HHHHHHHHHHHHHHHHHHhhcc-eEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHH--hcCC
Confidence               00  112   66655433         23344 99999999998653211100 000000    0000000  0112


Q ss_pred             eeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          232 FVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       232 ~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                                   +--+.+++|+|.++++++..+......|+.+++.+|-
T Consensus       219 -------------lgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~  255 (276)
T d1bdba_         219 -------------IGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGL  255 (276)
T ss_dssp             -------------TSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSG
T ss_pred             -------------CCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcCh
Confidence                         1124567788888888764322211346899998874

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.9e-13  Score=108.77  Aligned_cols=219  Identities=12%  Similarity=0.027  Sum_probs=133.9

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhc---cCceeEEe
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTL---LEDVTHIF  100 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~---~~~V~~~~  100 (303)
                      +.+|++|||||++.||+++++.|+ +.|++|++++|++.+..  ....++....+|+.+.+.++...+.   .|.++|.+
T Consensus         4 l~gK~alITGas~GIG~aia~~la-~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~a   82 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFA-REGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecc
Confidence            467999999999999999999999 68999999999876543  3456788889999988777666654   44477776


Q ss_pred             ecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC
Q 042242          101 WVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS  174 (303)
Q Consensus       101 ~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~  174 (303)
                      +....    ..+.++....+++|+.++..+.+++...  ..+.-.++.+++...              ..   .+   ..
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~--------------~~---~~---~~  142 (245)
T d2ag5a1          83 GFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS--------------SV---KG---VV  142 (245)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBT--------------TT---BC---CT
T ss_pred             cccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhh--------------cc---CC---cc
Confidence            54332    2244555568999999999998887764  112223333332100              00   00   11


Q ss_pred             ccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhh-HHHHHHHHhhhCCCceeeCCchhhhhh
Q 042242          175 NNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLG-CLCVYGAVCKHLNLPFVFGGTREIWEE  243 (303)
Q Consensus       175 ~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~  243 (303)
                      ....|+.+|...+         +. .+ +++..+.||.|-.+.......... .......+..  ..|            
T Consensus       143 ~~~~Y~~sKaal~~l~r~lA~e~~~~g-IrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--~~p------------  207 (245)
T d2ag5a1         143 NRCVYSTTKAAVIGLTKSVAADFIQQG-IRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLK--RQK------------  207 (245)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHH--TCT------------
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhhC-cEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHh--cCC------------
Confidence            1122666655333         22 23 999999999887632111000000 0000000111  122            


Q ss_pred             hcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          244 YCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       244 ~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                       +-.+...+|+|.++.+++...... ..|+.+.+.+|..
T Consensus       208 -l~R~~~pedva~~v~fL~s~~s~~-iTG~~i~VDGG~s  244 (245)
T d2ag5a1         208 -TGRFATAEEIAMLCVYLASDESAY-VTGNPVIIDGGWS  244 (245)
T ss_dssp             -TSSCEEHHHHHHHHHHHHSGGGTT-CCSCEEEECTTGG
T ss_pred             -CCCCcCHHHHHHHHHHHhChhhCC-CcCceEEeCCCcC
Confidence             112557889999999987654322 4568898888753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.43  E-value=4.9e-12  Score=103.28  Aligned_cols=207  Identities=12%  Similarity=0.090  Sum_probs=123.1

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCC-CHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLL-NPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~-~~~~l~~~~~~----   92 (303)
                      +++|+||||||++.||..++++|+ +.|++|++++|+..+..        ....++.++.+|++ +.++++++++.    
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999 68999999988765431        12346788999997 55556555443    


Q ss_pred             ---cCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhcc-----CCccEEEEeecccccccccCCCcccccCCc
Q 042242           93 ---LEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRA-----KALKHVSLQTGMKHYVSLQGLPEEKQVRFY  164 (303)
Q Consensus        93 ---~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~  164 (303)
                         +|.+++.|+.  .....++  +.+++|+.++..+..++...-     ....+++.+++...+.+.            
T Consensus        82 ~g~iDilvnnAG~--~~~~~~~--~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~------------  145 (254)
T d1sbya1          82 LKTVDILINGAGI--LDDHQIE--RTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI------------  145 (254)
T ss_dssp             HSCCCEEEECCCC--CCTTCHH--HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------
T ss_pred             cCCCCEEEeCCCC--CCHHHHH--HHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC------------
Confidence               3445555543  2223333  489999999999988877652     123455555543222110            


Q ss_pred             CcCCCCCCCCccchHHHHHHHHH---------H-hcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceee
Q 042242          165 DEECPRVSKSNNFYYVLEDLLKE---------K-LAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVF  234 (303)
Q Consensus       165 ~e~~~~~p~~~~~~y~~~k~~~e---------~-~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
                          +.  ...   |+.+|....         + ..+ +++..+.||.|..+-....... ...                
T Consensus       146 ----~~--~~~---Y~asKaal~~~t~~la~el~~~g-IrVn~I~PG~v~T~~~~~~~~~-~~~----------------  198 (254)
T d1sbya1         146 ----HQ--VPV---YSASKAAVVSFTNSLAKLAPITG-VTAYSINPGITRTPLVHTFNSW-LDV----------------  198 (254)
T ss_dssp             ----TT--SHH---HHHHHHHHHHHHHHHHHHHHHHS-EEEEEEEECSEESHHHHSCCCG-GGS----------------
T ss_pred             ----CC--CHH---HHHHHHHHHHHHHHHHhhccccC-eEEEEEEeCCCcCccccccccc-hhH----------------
Confidence                00  112   666554332         2 224 9999999999986311000000 000                


Q ss_pred             CCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCC
Q 042242          235 GGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGP  281 (303)
Q Consensus       235 ~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~  281 (303)
                      ....... .........+++|++++.++... .   .|+++.+.++.
T Consensus       199 ~~~~~~~-~~~~~~~~~e~va~~~~~~~~~~-~---tG~vi~vdgG~  240 (254)
T d1sbya1         199 EPRVAEL-LLSHPTQTSEQCGQNFVKAIEAN-K---NGAIWKLDLGT  240 (254)
T ss_dssp             CTTHHHH-HTTSCCEEHHHHHHHHHHHHHHC-C---TTCEEEEETTE
T ss_pred             HHHHHhc-cccCCCCCHHHHHHHHHHhhhCC-C---CCCEEEECCCE
Confidence            0000000 01112346778888888777554 2   35888888774

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-12  Score=106.66  Aligned_cols=121  Identities=15%  Similarity=0.050  Sum_probs=88.1

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhcc---
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTLL---   93 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~~---   93 (303)
                      .+..+|+|+||||++.||++++++|+ +.|++|++++|++++..       ....++..+.+|++|.++++++++.+   
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999 68999999999876532       12346889999999999887776533   


Q ss_pred             ----CceeEEeecccccC----ChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeec
Q 042242           94 ----EDVTHIFWVTWASQ----FASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTG  145 (303)
Q Consensus        94 ----~~V~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~  145 (303)
                          |.++|.++......    ..+...+.+++|+.++..+++++...  ..+..+++.+++
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS  143 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVAS  143 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeec
Confidence                33566655543322    23344568999999999998887665  223344555544

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=4.7e-12  Score=102.49  Aligned_cols=186  Identities=12%  Similarity=0.065  Sum_probs=117.7

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCe-------EEEEecCCcccc-----c--cCCCeEEEEecCCCHHHHHHHHhc---
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWK-------VYGIARKPEITA-----I--QSSSYCFISCDLLNPLDIKRKLTL---   92 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~-------V~~~~r~~~~~~-----~--~~~~~~~~~~D~~~~~~l~~~~~~---   92 (303)
                      .||||||++.||++++++|+ +.|++       |++.+|+.....     .  ...++.++.+|++|.++++++++.   
T Consensus         3 VvlITGas~GIG~aia~~la-~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFA-RAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHH-HhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            48999999999999999999 67876       888888865532     1  124577889999999988776654   


Q ss_pred             ----cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccC
Q 042242           93 ----LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ----~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                          +|.++|.++...    ...+.++..+.+++|+.++..+.+++...  ..+--+++.+++...+.+.          
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~----------  151 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF----------  151 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCC----------
Confidence                455666655432    22234555668999999999988887765  1122344444432222100          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            +.  ..+   |..+|....        ..... +++..+.||.+-.+.....                      
T Consensus       152 ------~~--~~~---Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~----------------------  198 (240)
T d2bd0a1         152 ------RH--SSI---YCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV----------------------  198 (240)
T ss_dssp             ------TT--CHH---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC----------------------
T ss_pred             ------CC--ChH---HHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc----------------------
Confidence                  00  122   776654333        22233 9999999998865311100                      


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDD  266 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~  266 (303)
                       +....      -.+..++|+|.++++++..+.
T Consensus       199 -~~~~~------~~~~~PedvA~~v~~l~s~~~  224 (240)
T d2bd0a1         199 -DDEMQ------ALMMMPEDIAAPVVQAYLQPS  224 (240)
T ss_dssp             -CSTTG------GGSBCHHHHHHHHHHHHTSCT
T ss_pred             -CHhhH------hcCCCHHHHHHHHHHHHcCCc
Confidence             00000      114467899999999887764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.41  E-value=1.3e-11  Score=103.17  Aligned_cols=218  Identities=13%  Similarity=-0.003  Sum_probs=125.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc----
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      ..++|++|||||+|.||++++++|+ +.|++|++++|+..+..        .....+.++.+|+++.++++..+..    
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la-~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLS-SLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence            5577999999999999999999999 68999999999875532        1134677899999999988766543    


Q ss_pred             ---cCceeEEeeccccc----CChHHHHHHHHHHHHHHHHHHHHHhhc---cCCccEEEEeecccccccccCCCcccccC
Q 042242           93 ---LEDVTHIFWVTWAS----QFASDMHKCCEQNKAMMCNALNAILPR---AKALKHVSLQTGMKHYVSLQGLPEEKQVR  162 (303)
Q Consensus        93 ---~~~V~~~~~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~~~~~~s~~~~y~~~~~~~g~~~~~  162 (303)
                         +|.++|.++.....    ....+..+.+.+|......+...+...   ...-..++..++.......          
T Consensus       101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~----------  170 (294)
T d1w6ua_         101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS----------  170 (294)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC----------
T ss_pred             ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc----------
Confidence               34466665543222    223344456777877766665554322   1222222222221110000          


Q ss_pred             CcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCcee
Q 042242          163 FYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFV  233 (303)
Q Consensus       163 ~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (303)
                            +.  ..+   |+.+|...+         +....+++..+.||.|-.+...........  ......+  ..|+ 
T Consensus       171 ------~~--~~~---YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~--~~~~~~~--~~pl-  234 (294)
T d1w6ua_         171 ------GF--VVP---SASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGT--FEKEMIG--RIPC-  234 (294)
T ss_dssp             ------TT--CHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSH--HHHHHHT--TCTT-
T ss_pred             ------cc--cch---HHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHH--HHHHHhh--cCCC-
Confidence                  00  112   666554333         222129999999999976432211110001  0111111  1221 


Q ss_pred             eCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          234 FGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       234 ~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                  -.+..++|+|.++++++.+... ...|+++.+.+|..
T Consensus       235 ------------~R~~~pediA~~v~fL~sd~s~-~itG~~i~vDGG~~  270 (294)
T d1w6ua_         235 ------------GRLGTVEELANLAAFLCSDYAS-WINGAVIKFDGGEE  270 (294)
T ss_dssp             ------------SSCBCHHHHHHHHHHHTSGGGT-TCCSCEEEESTTHH
T ss_pred             ------------CCCCCHHHHHHHHHHHhCchhc-CCCCcEEEECCChh
Confidence                        1255789999999998865432 14468888887753

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.40  E-value=3.8e-12  Score=103.88  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=78.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc--------
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL--------   92 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~--------   92 (303)
                      ++|+||||||++.||.+++++|+ +.|  +.|++.+|+.++..    ....+++++++|++|.++++++++.        
T Consensus         2 ~~KtilITGassGIG~a~a~~la-~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLV-KDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHH-TCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHH-HCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCC
Confidence            45899999999999999999999 567  46888899876543    2235789999999999887766542        


Q ss_pred             -cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 -LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 -~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                       +|.++|.|+....     ..+.....+.+++|+.++..+.+.+...
T Consensus        81 ~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  127 (250)
T d1yo6a1          81 GLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPL  127 (250)
T ss_dssp             CCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHH
T ss_pred             CeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence             4446666654322     2223445568999999999988887643

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.38  E-value=7.7e-13  Score=108.10  Aligned_cols=215  Identities=13%  Similarity=0.015  Sum_probs=124.4

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHh-------ccCceeEEee
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLT-------LLEDVTHIFW  101 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~-------~~~~V~~~~~  101 (303)
                      ++|||||++.||+.+++.|+ +.|++|++.+|+..... .+.....+.++|+.+.++++++++       .+|.++|.++
T Consensus         2 TAlVTGas~GiG~aiA~~la-~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg   80 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLS-EAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   80 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHH-HTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            79999999999999999999 68999999999765532 111112234577777665544443       3555666654


Q ss_pred             ccc-----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCC
Q 042242          102 VTW-----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKS  174 (303)
Q Consensus       102 ~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~  174 (303)
                      ...     ...+.++..+.+++|+.++..+++++...  ..+--+++.+++...+.+.                +.  ..
T Consensus        81 ~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~----------------~~--~~  142 (252)
T d1zmta1          81 FAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW----------------KE--LS  142 (252)
T ss_dssp             CCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC----------------TT--CH
T ss_pred             CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc----------------cc--cc
Confidence            322     12234455568899999998888877654  1122344444432121000                00  12


Q ss_pred             ccchHHHHHHHHH---------HhcCCcceEEecCCceeecCCCCccchhh---HHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          175 NNFYYVLEDLLKE---------KLAGKVAWSVHRPGLLLGSSHRSLYNFLG---CLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       175 ~~~~y~~~k~~~e---------~~~~~~~~~ilRp~~v~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      +   |..+|....         +....+++..+.|+.|-.+..........   .......+.+  ..|           
T Consensus       143 ~---Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~--~~p-----------  206 (252)
T d1zmta1         143 T---YTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKK--VTA-----------  206 (252)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHH--HSS-----------
T ss_pred             c---cccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHh--cCC-----------
Confidence            2   666554333         22212999999999998743221111000   0000011111  112           


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                        +-.+.+++|+|.++++++...... ..|+.+.+.+|..
T Consensus       207 --l~R~g~pedvA~~v~fL~S~~s~~-iTG~~i~vdGG~~  243 (252)
T d1zmta1         207 --LQRLGTQKELGELVAFLASGSCDY-LTGQVFWLAGGFP  243 (252)
T ss_dssp             --SSSCBCHHHHHHHHHHHHTTSCGG-GTTCEEEESTTCC
T ss_pred             --CCCCcCHHHHHHHHHHHhCchhcC-CcCCeEEECCCce
Confidence              112557899999999988554322 4568999988864

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=8.3e-12  Score=102.33  Aligned_cols=159  Identities=15%  Similarity=0.068  Sum_probs=103.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhh--cCCCeEEEEecCCcccc-------cc--CCCeEEEEecCCCHHHHHHHHhcc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLIS--TANWKVYGIARKPEITA-------IQ--SSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~--~~g~~V~~~~r~~~~~~-------~~--~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      .+.+|.++||||++.||+.++++|.+  ..|++|++++|++++..       ..  ..++..+++|+++.++++++++.+
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            45678999999999999999999973  37999999999876532       01  235778999999999888776432


Q ss_pred             ---------C--ceeEEeeccc-------ccCChHHHHHHHHHHHHHHHHHHHHHhhccCC----ccEEEEeeccccccc
Q 042242           94 ---------E--DVTHIFWVTW-------ASQFASDMHKCCEQNKAMMCNALNAILPRAKA----LKHVSLQTGMKHYVS  151 (303)
Q Consensus        94 ---------~--~V~~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~----~~~~~~~s~~~~y~~  151 (303)
                               +  .+++.++...       ...+..+..+.+++|+.++..+.+++......    -.+++.+++...+..
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~  162 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP  162 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCC
Confidence                     1  1333333211       12233445568999999999999988776221    335555554322100


Q ss_pred             ccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH--------HhcCCcceEEecCCceee
Q 042242          152 LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGKVAWSVHRPGLLLG  205 (303)
Q Consensus       152 ~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~~~~~ilRp~~v~G  205 (303)
                      .                +.  ...   |..+|....        ...+ +++..+.||.|..
T Consensus       163 ~----------------~~--~~~---Y~asKaal~~lt~~la~e~~g-IrVn~v~PG~i~T  202 (259)
T d1oaaa_         163 Y----------------KG--WGL---YCAGKAARDMLYQVLAAEEPS-VRVLSYAPGPLDN  202 (259)
T ss_dssp             C----------------TT--CHH---HHHHHHHHHHHHHHHHHHCTT-EEEEEEECCSBSS
T ss_pred             C----------------cc--chH---HHHHHHHHHHHHHHHHhCCCC-CEEEEEEcCCCCC
Confidence            0                00  122   666555443        2223 9999999988876

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=6.7e-12  Score=102.25  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=78.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhh--cCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           28 KNVAVIFGVTGLVGKELARRLIS--TANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~--~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +|+||||||++.||++++++|++  ..|++|++.+|++++..      ....++.++.+|++|+++++++++.       
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence            37999999999999999999972  47999999999987642      1245889999999999887766553       


Q ss_pred             --cCceeEEeecccc-----cCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 --LEDVTHIFWVTWA-----SQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 --~~~V~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                        +|.++|.|+....     .....+..+.+++|+.++..+.+++...
T Consensus        82 ~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~  129 (248)
T d1snya_          82 QGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPL  129 (248)
T ss_dssp             GCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHH
Confidence              3345555543221     2233445568999999998888876543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.1e-11  Score=98.58  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=85.2

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c--c--CCCeEEEEecCCCHHHHHHHHhc----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I--Q--SSSYCFISCDLLNPLDIKRKLTL----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~--~--~~~~~~~~~D~~~~~~l~~~~~~----   92 (303)
                      .++|+||||||++.||.++++.|+ +.|++|++++|++.+..     .  .  ..++..+++|++++++++++++.    
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            457999999999999999999999 68999999999875532     1  1  13577889999999987776643    


Q ss_pred             ---cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc----cCCccEEEEeec
Q 042242           93 ---LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR----AKALKHVSLQTG  145 (303)
Q Consensus        93 ---~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~~~~~~s~  145 (303)
                         +|.++|.|+...    ...+.....+.+++|+.+...+..++.+.    ...-.+++.+++
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS  150 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  150 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence               455777765432    22345556668999999988877776442    222345555554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.7e-11  Score=102.42  Aligned_cols=118  Identities=8%  Similarity=-0.037  Sum_probs=80.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-------------cCCCeEEEEecCCCHHHHHHHHh--
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-------------QSSSYCFISCDLLNPLDIKRKLT--   91 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-------------~~~~~~~~~~D~~~~~~l~~~~~--   91 (303)
                      .+|++|||||++.||+.+++.|+ +.|++|++.+|+......             .........+|+.|.+++++.++  
T Consensus         6 ~gKvalITGas~GIG~aiA~~la-~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFA-ERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            57999999999999999999999 789999999886542210             01134456788888766555443  


Q ss_pred             -----ccCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeec
Q 042242           92 -----LLEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTG  145 (303)
Q Consensus        92 -----~~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~  145 (303)
                           .+|.++|.|+...    ...+..+....+++|+.++..+++++...  ..+--+++.+++
T Consensus        85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS  149 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTAS  149 (302)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCC
Confidence                 3555777665432    22344555668999999999999887765  122234555544

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.33  E-value=1.4e-11  Score=100.88  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=100.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHHhccC--
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKLTLLE--   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~~--   94 (303)
                      +++||||||+|.||..++++|+ +.|++ |+++.|+..+..          ....++.++.+|++|.++++++++.+.  
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la-~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~   87 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLA-RRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD   87 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHH-HHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             cCEEEEECCCcHHHHHHHHHHH-HCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence            4699999999999999999999 67885 888888643321          112357889999999999999887653  


Q ss_pred             ----ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc-cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242           95 ----DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR-AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus        95 ----~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                          .|+|.++....    .....+....++.|+.++.++.+++... ...++.++++++  .++.+.            
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~--~~g~~~------------  153 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFAS--AFGAPG------------  153 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHH--HTCCTT------------
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhh--ccCCcc------------
Confidence                26666554322    2233444457889999999998887765 233444444332  111110            


Q ss_pred             cCCCCCCCCccchHHHHHHHHH-----H-hcCCcceEEecCCceeec
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE-----K-LAGKVAWSVHRPGLLLGS  206 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e-----~-~~~~~~~~ilRp~~v~G~  206 (303)
                             ...   |+..|...+     . ..+ ++++.+.|+.+.+.
T Consensus       154 -------~~~---YaAaka~l~~la~~~~~~G-i~v~~I~pg~~~~~  189 (259)
T d2fr1a1         154 -------LGG---YAPGNAYLDGLAQQRRSDG-LPATAVAWGTWAGS  189 (259)
T ss_dssp             -------CTT---THHHHHHHHHHHHHHHHTT-CCCEEEEECCBC--
T ss_pred             -------cHH---HHHHHHhHHHHHHHHHhCC-CCEEECCCCcccCC
Confidence                   122   666555433     2 234 99999999988763

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.3e-11  Score=97.87  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe---cCCcccc----------ccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIA---RKPEITA----------IQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~---r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      .|.||||||++.||+++++.|+ +.|.+|+.+.   |+.....          ....++.++.+|++|.+++.++++.+.
T Consensus         2 kkVvlITGassGIG~a~A~~la-~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~   80 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLA-SDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHH-TCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEccCCCHHHHHHHHHHH-HCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc
Confidence            3567899999999999999999 6787755443   4332211          123468899999999999998887653


Q ss_pred             -----ceeEEeecccc----cCChHHHHHHHHHHHHHHHHHHHHHhhc--cCCccEEEEeecccccccccCCCcccccCC
Q 042242           95 -----DVTHIFWVTWA----SQFASDMHKCCEQNKAMMCNALNAILPR--AKALKHVSLQTGMKHYVSLQGLPEEKQVRF  163 (303)
Q Consensus        95 -----~V~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~  163 (303)
                           .+++.++....    ..+.++....+++|+.++.++.+++...  ..+--+++.+++.....+.           
T Consensus        81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~-----------  149 (285)
T d1jtva_          81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL-----------  149 (285)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------
T ss_pred             ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC-----------
Confidence                 24444443222    2234455568999999999988887654  1122333333332111000           


Q ss_pred             cCcCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceee
Q 042242          164 YDEECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLG  205 (303)
Q Consensus       164 ~~e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G  205 (303)
                           |.  ..+   |..+|...+         +. .+ +++..+.||.|-.
T Consensus       150 -----~~--~~~---Y~asKaal~~l~~~la~El~~~g-IrVn~V~PG~v~T  190 (285)
T d1jtva_         150 -----PF--NDV---YCASKFALEGLCESLAVLLLPFG-VHLSLIECGPVHT  190 (285)
T ss_dssp             -----TT--CHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECCBCC
T ss_pred             -----CC--chH---HHHHHHHHHHHHHHHHHHhhccC-cEEEEEecCCCCC
Confidence                 00  122   777665443         22 23 9999999999865

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=4.7e-10  Score=91.59  Aligned_cols=216  Identities=10%  Similarity=0.054  Sum_probs=125.2

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhcc----
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLL----   93 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~----   93 (303)
                      +.+|+||||||+|  .||+++++.|+ +.|++|++.+|++....      ...........|+.+..++.+.++..    
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~-~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            3579999999998  79999999999 78999999999855321      12345677889999988776655432    


Q ss_pred             ---CceeEEeecccccC---------ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCccccc
Q 042242           94 ---EDVTHIFWVTWASQ---------FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQV  161 (303)
Q Consensus        94 ---~~V~~~~~~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~  161 (303)
                         |.++|.+.......         ..+........|+.+...+++++.....+-..++.+++....            
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~------------  149 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------  149 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc------------
Confidence               22444433221111         112233466788888888888877652222233333321110            


Q ss_pred             CCcCcCCCCCCCCccchHHHHHHHHH--------HhcCC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCce
Q 042242          162 RFYDEECPRVSKSNNFYYVLEDLLKE--------KLAGK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPF  232 (303)
Q Consensus       162 ~~~~e~~~~~p~~~~~~y~~~k~~~e--------~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
                      .+.    |.  ...   |+.+|...+        ..... +++..++|+.|..+.....   ............  ..|+
T Consensus       150 ~~~----~~--~~~---Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~---~~~~~~~~~~~~--~~pl  215 (258)
T d1qsga_         150 RAI----PN--YNV---MGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI---KDFRKMLAHCEA--VTPI  215 (258)
T ss_dssp             SBC----TT--TTH---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS---TTHHHHHHHHHH--HSTT
T ss_pred             cCC----CC--cHH---HHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc---chhhhHHHHHHh--CCCC
Confidence            000    00  122   666655443        12223 9999999999986432211   011111111111  1221


Q ss_pred             eeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCC
Q 042242          233 VFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPR  282 (303)
Q Consensus       233 ~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~  282 (303)
                                   -.+..++|+|.++++++.+.. ....|+++.+.+|..
T Consensus       216 -------------~R~~~peeia~~v~fL~s~~s-~~itG~~i~vDGG~~  251 (258)
T d1qsga_         216 -------------RRTVTIEDVGNSAAFLCSDLS-AGISGEVVHVDGGFS  251 (258)
T ss_dssp             -------------SSCCCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTGG
T ss_pred             -------------CCCcCHHHHHHHHHHHhCchh-cCccCceEEECcCHH
Confidence                         125578899999988885433 224568898988854

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.6e-10  Score=92.59  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=75.9

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc----ccCCCeEEEEecCCCHHHHHHHHhc-------c
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA----IQSSSYCFISCDLLNPLDIKRKLTL-------L   93 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~-------~   93 (303)
                      +.++|++|||||++.||.+++++|+ +.|++|++++|+..+..    ..........+|+.+...+++.+..       .
T Consensus         2 slkGKvalITGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV   80 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence            4578999999999999999999999 68999999999876643    1235677888999998766554433       2


Q ss_pred             CceeEEeeccc----------ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           94 EDVTHIFWVTW----------ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        94 ~~V~~~~~~~~----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      |.+++.+....          .........+.+++|+.++..+.+++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~  130 (248)
T d2o23a1          81 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGE  130 (248)
T ss_dssp             CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHH
Confidence            32222211110          11123344458899999999998887654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=1e-10  Score=94.34  Aligned_cols=196  Identities=12%  Similarity=0.015  Sum_probs=114.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHH-------HHhc--cCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKR-------KLTL--LEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~-------~~~~--~~~V~~   98 (303)
                      +|+||||||+|.||+++++.|+ +.|++|.+++|.+....   .....+.+|..+.+....       .+..  +|.++|
T Consensus         2 gK~vlITGas~GIG~a~a~~l~-~~G~~V~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFR-ARNWWVASIDVVENEEA---SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSCCTTS---SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCccccc---cccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence            6899999999999999999999 78999999998765421   223344556555544332       2222  455777


Q ss_pred             Eeeccc----ccCC-hHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCC
Q 042242           99 IFWVTW----ASQF-ASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSK  173 (303)
Q Consensus        99 ~~~~~~----~~~~-~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~  173 (303)
                      .++.-.    .... .+.....+++|+.+...+..++..+.++--+++.+++...+...                +.  .
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~----------------~~--~  139 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT----------------PG--M  139 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC----------------TT--B
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCc----------------cC--C
Confidence            665311    1112 23344578999999999888887652222344444432221000                00  1


Q ss_pred             CccchHHHHHHHHH-----Hh---c--CC-cceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhh
Q 042242          174 SNNFYYVLEDLLKE-----KL---A--GK-VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWE  242 (303)
Q Consensus       174 ~~~~~y~~~k~~~e-----~~---~--~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (303)
                      .+   |+.+|...+     ++   .  .. +++..+.|+.+..+     +.  ..      .     .+    .      
T Consensus       140 ~~---Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~-----~~--~~------~-----~~----~------  188 (236)
T d1dhra_         140 IG---YGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP-----MN--RK------S-----MP----E------  188 (236)
T ss_dssp             HH---HHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH-----HH--HH------H-----ST----T------
T ss_pred             cc---cHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC-----cc--hh------h-----Cc----c------
Confidence            22   777776555     11   1  12 89999999888752     10  01      0     01    1      


Q ss_pred             hhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEe
Q 042242          243 EYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNA  277 (303)
Q Consensus       243 ~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni  277 (303)
                      ..+-.+...+++|..+++++...... ..|..+.+
T Consensus       189 ~~~~~~~~pe~va~~~~~l~s~~~~~-i~G~~i~v  222 (236)
T d1dhra_         189 ADFSSWTPLEFLVETFHDWITGNKRP-NSGSLIQV  222 (236)
T ss_dssp             SCGGGSEEHHHHHHHHHHHHTTTTCC-CTTCEEEE
T ss_pred             chhhcCCCHHHHHHHHHHHhCCCccC-CCCCeEEE
Confidence            11112456788999998887654322 33465555

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=3.4e-10  Score=91.36  Aligned_cols=206  Identities=14%  Similarity=0.089  Sum_probs=121.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccC------ceeEEee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLE------DVTHIFW  101 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~------~V~~~~~  101 (303)
                      .|++|||||++.||+++++.|+ +.|++|++++|+++.     .+...+++|+.+............      .+++.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la-~~Ga~V~i~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALK-ARGYRVVVLDLRREG-----EDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   74 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HHTCEEEEEESSCCS-----SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCccc-----ccceEeeccccchhhhHHHHHhhhccccccchhhhhh
Confidence            4899999999999999999999 689999999998754     356678899999876655543321      1111111


Q ss_pred             c--------ccccCChHHHHHHHHHHHHHHHHHHHHHhhc--------cCCccEEEEeecccccccccCCCcccccCCcC
Q 042242          102 V--------TWASQFASDMHKCCEQNKAMMCNALNAILPR--------AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYD  165 (303)
Q Consensus       102 ~--------~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~  165 (303)
                      .        ...........+.+++|+.+...++..+...        ..+..+++.+++...+.+.             
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~-------------  141 (241)
T d1uaya_          75 VGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ-------------  141 (241)
T ss_dssp             CCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC-------------
T ss_pred             ccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC-------------
Confidence            1        0111223334457899998888777766543        1123355555543222110             


Q ss_pred             cCCCCCCCCccchHHHHHHHHH---------Hh-cCCcceEEecCCceeecCCCCccchhhHHHHHHHHhhhCCCceeeC
Q 042242          166 EECPRVSKSNNFYYVLEDLLKE---------KL-AGKVAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFG  235 (303)
Q Consensus       166 e~~~~~p~~~~~~y~~~k~~~e---------~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
                         +.  ..+   |+.+|...+         +. .+ +++..+.||.|..+......   ...  ......  ..|+  .
T Consensus       142 ---~~--~~~---Y~asKaal~~lt~~lA~ela~~g-IrVN~V~PG~i~T~~~~~~~---~~~--~~~~~~--~~~~--~  203 (241)
T d1uaya_         142 ---IG--QAA---YAASKGGVVALTLPAARELAGWG-IRVVTVAPGLFDTPLLQGLP---EKA--KASLAA--QVPF--P  203 (241)
T ss_dssp             ---TT--CHH---HHHHHHHHHHHHHHHHHHHGGGT-EEEEEEEECSCSSHHHHTSC---HHH--HHHHHT--TCCS--S
T ss_pred             ---CC--chh---hHHHHHHHHHHHHHHHHHHhhcC-CceeeecCCcccccccchhh---hhH--HHHHHh--cCCC--C
Confidence               00  122   666555433         22 23 99999999998753211110   110  011111  1221  1


Q ss_pred             CchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecCCCc
Q 042242          236 GTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRF  283 (303)
Q Consensus       236 g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~~~~  283 (303)
                      +          .+..++|+|.++++++.+..   ..|+++.+.+|..+
T Consensus       204 ~----------R~g~pedvA~~v~fL~s~~~---iTG~~i~VDGG~~m  238 (241)
T d1uaya_         204 P----------RLGRPEEYAALVLHILENPM---LNGEVVRLDGALRM  238 (241)
T ss_dssp             C----------SCCCHHHHHHHHHHHHHCTT---CCSCEEEESTTCCC
T ss_pred             C----------CCcCHHHHHHHHHHHHhCCC---CCCCEEEECCcccC
Confidence            1          14578899999999887543   34589999888543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.23  E-value=7.4e-11  Score=95.10  Aligned_cols=102  Identities=12%  Similarity=0.051  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHH-------HHh--ccCceeE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKR-------KLT--LLEDVTH   98 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~-------~~~--~~~~V~~   98 (303)
                      ..|||||||++.||++++++|+ +.|++|++++|++....   .....+.+|..+.+....       .++  .+|.++|
T Consensus         2 ~gkVlITGas~GIG~aia~~l~-~~G~~V~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~lin   77 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFK-KNGYTVLNIDLSANDQA---DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFC   77 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCCTTS---SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCchhcc---cccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEE
Confidence            4689999999999999999999 68999999999875421   223344566666543322       222  2345777


Q ss_pred             Eeecccc----cCC-hHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           99 IFWVTWA----SQF-ASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        99 ~~~~~~~----~~~-~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                      .|+....    ... .......+++|+.++..+.+++..+
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  117 (235)
T d1ooea_          78 VAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTH  117 (235)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccc
Confidence            6653211    112 2233347899999999888888765

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.22  E-value=1.2e-09  Score=89.89  Aligned_cols=65  Identities=11%  Similarity=0.028  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      +++|++|||||+|  .||.+++++|+ ..|++|++++|++....      .......+..+|+.+.+++.+.++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la-~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~   75 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYN   75 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHH
Confidence            3579999999987  79999999999 79999999999864221      123456788999999987766664

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.3e-11  Score=98.33  Aligned_cols=117  Identities=15%  Similarity=0.069  Sum_probs=82.3

Q ss_pred             CCEE-EEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-------ccCCCeEEEEecCCCHHHHHHHHhc-------
Q 042242           28 KNVA-VIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-------IQSSSYCFISCDLLNPLDIKRKLTL-------   92 (303)
Q Consensus        28 ~~~v-lVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~~D~~~~~~l~~~~~~-------   92 (303)
                      +|+| |||||++.||..++++|++..|+.|++.+|+.++..       ....++.++++|++|.++++++++.       
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            3444 999999999999999998446899999999976642       1245788999999999988766544       


Q ss_pred             cCceeEEeecccccC----ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEee
Q 042242           93 LEDVTHIFWVTWASQ----FASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQT  144 (303)
Q Consensus        93 ~~~V~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~~~~s  144 (303)
                      +|.++|-|+......    ...+....+++|+.++..+++.+...-++--+++.++
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            344555555432221    2233445789999999999999887622223444444

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-10  Score=95.56  Aligned_cols=107  Identities=17%  Similarity=0.093  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------ccCCCeEEEEecCCCHHHHHHHHhc-----
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------IQSSSYCFISCDLLNPLDIKRKLTL-----   92 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~D~~~~~~l~~~~~~-----   92 (303)
                      ..+|++||||||+.||+++++.|+ +.|++|++++|+.++..        .....+..+.+|+.+.......++.     
T Consensus        12 L~GK~alITGassGIG~aiA~~la-~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            468999999999999999999999 68999999999876532        1123566788999998776655443     


Q ss_pred             --cCceeEEeeccc----ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           93 --LEDVTHIFWVTW----ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        93 --~~~V~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                        .+.+++.++...    ...+.++..+.+++|+.++..+.+.+...
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~  137 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPM  137 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHH
Confidence              233444433322    22234455568999999988888887654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.13  E-value=3.4e-09  Score=86.82  Aligned_cols=107  Identities=11%  Similarity=-0.005  Sum_probs=70.4

Q ss_pred             CCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHHhcc-----
Q 042242           26 DAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKLTLL-----   93 (303)
Q Consensus        26 ~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~-----   93 (303)
                      +.+|++|||||+|  .||++++++|+ ..|++|++++|+..+..     ....+...+++|+.+.+++..+++.+     
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la-~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQ-EQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHH-HTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH-HcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            3579999999765  59999999999 68999999999876531     12345778899999987665544332     


Q ss_pred             --C---ceeEEeeccc---------ccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           94 --E---DVTHIFWVTW---------ASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        94 --~---~V~~~~~~~~---------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                        +   .++|.++...         .+.........+..|+.............
T Consensus        83 ~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (268)
T d2h7ma1          83 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPI  136 (268)
T ss_dssp             TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             cCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhh
Confidence              2   2444443211         11223344446677777777666666554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.09  E-value=1.5e-11  Score=95.91  Aligned_cols=79  Identities=15%  Similarity=-0.014  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc------ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA------IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      +.++|+|+||||+|.||+.+++.|+ +.|++|++++|+.++..      ....++.+..+|+.|.+.+++++.++|.|+|
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLA-GEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH-hhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            4578999999999999999999999 68999999999976642      1123566788999999999999999998888


Q ss_pred             Eeeccc
Q 042242           99 IFWVTW  104 (303)
Q Consensus        99 ~~~~~~  104 (303)
                      .++...
T Consensus        99 ~Ag~g~  104 (191)
T d1luaa1          99 AGAIGL  104 (191)
T ss_dssp             CCCTTC
T ss_pred             cCcccc
Confidence            876543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.04  E-value=1.3e-08  Score=84.43  Aligned_cols=216  Identities=11%  Similarity=0.049  Sum_probs=115.4

Q ss_pred             CCCCCEEEEEcCCC--hhHHHHHHHHhhcCCCeEEEEecCCccc--------------c--ccC--CCe-EEEEec--C-
Q 042242           25 VDAKNVAVIFGVTG--LVGKELARRLISTANWKVYGIARKPEIT--------------A--IQS--SSY-CFISCD--L-   80 (303)
Q Consensus        25 ~~~~~~vlVtGatG--~iG~~l~~~L~~~~g~~V~~~~r~~~~~--------------~--~~~--~~~-~~~~~D--~-   80 (303)
                      .+++|++|||||+|  .||+.+++.|+ +.|++|++.+|++...              .  .+.  ... ....+|  + 
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la-~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLA-AAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence            45789999999987  89999999999 6899999998853210              0  000  011 122222  1 


Q ss_pred             --------------------CCHHHH----HHHHhccCceeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHH
Q 042242           81 --------------------LNPLDI----KRKLTLLEDVTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAI  130 (303)
Q Consensus        81 --------------------~~~~~l----~~~~~~~~~V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~  130 (303)
                                          .+.+.+    .+.+..+|.++|.++..      +.+.+.++..+.+++|+.+...++.++
T Consensus        84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~  163 (297)
T d1d7oa_          84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF  163 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence                                111222    22233455566665432      122344455568899999999999988


Q ss_pred             hhccCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHH---------HHHHh--cCCcceEEec
Q 042242          131 LPRAKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDL---------LKEKL--AGKVAWSVHR  199 (303)
Q Consensus       131 ~~~~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~---------~~e~~--~~~~~~~ilR  199 (303)
                      ......-...+.+++.....            ...     .....   |...|.         ..++.  .+ +++..+.
T Consensus       164 ~~~~~~~g~~~~~~~~~~~~------------~~~-----~~~~~---y~~aKaa~~~l~~~~a~e~~~~~g-IrvN~I~  222 (297)
T d1d7oa_         164 LPIMNPGGASISLTYIASER------------IIP-----GYGGG---MSSAKAALESDTRVLAFEAGRKQN-IRVNTIS  222 (297)
T ss_dssp             GGGEEEEEEEEEEECGGGTS------------CCT-----TCTTT---HHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEE
T ss_pred             HHHhhcCCcceeeeehhhcc------------ccc-----ccccc---eecccccccccccccchhccccce-EEecccc
Confidence            76522111222222110100            000     00112   554432         22232  24 9999999


Q ss_pred             CCceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeec
Q 042242          200 PGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAIN  279 (303)
Q Consensus       200 p~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~  279 (303)
                      |+.+..+..... .....+  .....+  ..|+.             .+.+.+|+|.++++++...... ..|+++.+.+
T Consensus       223 PG~i~T~~~~~~-~~~~~~--~~~~~~--~~Plg-------------R~~~peevA~~v~fL~S~~a~~-itGq~i~vDG  283 (297)
T d1d7oa_         223 AGPLGSRAAKAI-GFIDTM--IEYSYN--NAPIQ-------------KTLTADEVGNAAAFLVSPLASA-ITGATIYVDN  283 (297)
T ss_dssp             ECCCBCCCSSCC-SHHHHH--HHHHHH--HSSSC-------------CCBCHHHHHHHHHHHTSGGGTT-CCSCEEEEST
T ss_pred             cccccchhhhhc-cCCHHH--HHHHHh--CCCCC-------------CCCCHHHHHHHHHHHhCchhcC-CcCceEEECc
Confidence            999987433211 111111  111111  12211             2457889999999887543321 4568888887


Q ss_pred             CC
Q 042242          280 GP  281 (303)
Q Consensus       280 ~~  281 (303)
                      |.
T Consensus       284 G~  285 (297)
T d1d7oa_         284 GL  285 (297)
T ss_dssp             TG
T ss_pred             CH
Confidence            74

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=98.96  E-value=1.5e-08  Score=83.58  Aligned_cols=212  Identities=12%  Similarity=0.062  Sum_probs=115.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCC-----------------eEEEEecCCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSS-----------------YCFISCDLLN   82 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~-----------------~~~~~~D~~~   82 (303)
                      ..++||||++.||+++++.|+ +.|++|++.+|+.....         .....                 .....+|+++
T Consensus         3 pVAlITGas~GIG~aiA~~la-~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLH-AEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence            578999999999999999999 68999999888754321         00112                 2334567888


Q ss_pred             HHHHHHHHh-------ccCceeEEeecccccCC----h--------------HHHHHHHHHHHHHHHHHHHHHhhc----
Q 042242           83 PLDIKRKLT-------LLEDVTHIFWVTWASQF----A--------------SDMHKCCEQNKAMMCNALNAILPR----  133 (303)
Q Consensus        83 ~~~l~~~~~-------~~~~V~~~~~~~~~~~~----~--------------~~~~~~~~~n~~~~~~ll~~~~~~----  133 (303)
                      .++++++++       .+|.++|.++.......    .              ......+.+|+.+...+.+++...    
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  161 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT  161 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence            887777664       35557777654322110    0              011135778888888777765432    


Q ss_pred             ----cCCccEEEEeecccccccccCCCcccccCCcCcCCCCCCCCccchHHHHHHHHH---------HhcCCcceEEecC
Q 042242          134 ----AKALKHVSLQTGMKHYVSLQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKE---------KLAGKVAWSVHRP  200 (303)
Q Consensus       134 ----~~~~~~~~~~s~~~~y~~~~~~~g~~~~~~~~e~~~~~p~~~~~~y~~~k~~~e---------~~~~~~~~~ilRp  200 (303)
                          ......++..++....                  .+......   |..+|....         +....+++..+.|
T Consensus       162 ~~~~~~~~~~ii~~~s~~~~------------------~~~~~~~~---Y~asKaal~~lt~~lA~el~~~gIrvN~I~P  220 (284)
T d1e7wa_         162 PAKHRGTNYSIINMVDAMTN------------------QPLLGYTI---YTMAKGALEGLTRSAALELAPLQIRVNGVGP  220 (284)
T ss_dssp             CGGGSCSCEEEEEECCTTTT------------------SCCTTCHH---HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred             HHHhcCCCCccccccccccc------------------CCccceee---eccccccchhhhHHHHHHhCCcccccccccc
Confidence                1111222222221010                  00000122   666555333         2221199999999


Q ss_pred             CceeecCCCCccchhhHHHHHHHHhhhCCCceeeCCchhhhhhhcccCccHHHHHHHHHHHhcCcCCcCCCCceEEeecC
Q 042242          201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAING  280 (303)
Q Consensus       201 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~a~a~~~~~~~~~~~~~~g~~yni~~~  280 (303)
                      |.+-..   ....  ...  ......  ..|+  .+          .+..++|+|.++++++..... ...|+.+.+.+|
T Consensus       221 G~t~~~---~~~~--~~~--~~~~~~--~~pl--~~----------R~~~peeiA~~v~fL~S~~s~-~itG~~i~VDGG  278 (284)
T d1e7wa_         221 GLSVLV---DDMP--PAV--WEGHRS--KVPL--YQ----------RDSSAAEVSDVVIFLCSSKAK-YITGTCVKVDGG  278 (284)
T ss_dssp             SSBCCG---GGSC--HHH--HHHHHT--TCTT--TT----------SCBCHHHHHHHHHHHHSGGGT-TCCSCEEEESTT
T ss_pred             cccccc---ccCC--HHH--HHHHHh--cCCC--CC----------CCCCHHHHHHHHHHHhCchhc-CccCCeEEECcC
Confidence            863221   1110  111  111111  2221  11          145788999999998854432 245689999888


Q ss_pred             CCcc
Q 042242          281 PRFT  284 (303)
Q Consensus       281 ~~~s  284 (303)
                      ..+|
T Consensus       279 ~sl~  282 (284)
T d1e7wa_         279 YSLT  282 (284)
T ss_dssp             GGGC
T ss_pred             hhcc
Confidence            6544

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.95  E-value=5.6e-08  Score=79.15  Aligned_cols=74  Identities=20%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------ccCCCeEEEEecCCCH----HHHHHHH-----
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---------IQSSSYCFISCDLLNP----LDIKRKL-----   90 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~D~~~~----~~l~~~~-----   90 (303)
                      .++|||||++.||+.+++.|+ +.|++|++++|+.++..         ........+..|..+.    +.+.+++     
T Consensus         2 ~vAlVTGas~GIG~aia~~la-~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLH-QQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR   80 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence            478999999999999999999 68999999999876431         1123455566655442    3333332     


Q ss_pred             --hccCceeEEeecc
Q 042242           91 --TLLEDVTHIFWVT  103 (303)
Q Consensus        91 --~~~~~V~~~~~~~  103 (303)
                        ..+|.++|.++..
T Consensus        81 ~~g~iDilvnnAG~~   95 (266)
T d1mxha_          81 AFGRCDVLVNNASAY   95 (266)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCCCEEEECCccC
Confidence              2356567766543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.87  E-value=8.8e-08  Score=77.58  Aligned_cols=91  Identities=16%  Similarity=0.151  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHh--------ccCceeEE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLT--------LLEDVTHI   99 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--------~~~~V~~~   99 (303)
                      +|.|+||||++.||++++++|+ +.|++|++++|+..+.          ..|+.+.........        ..|.+++.
T Consensus         1 mkVvlITGas~GIG~aiA~~la-~~Ga~V~~~~~~~~~~----------~~d~~~~~~~~~~~~~~~~~~~~~id~lv~~   69 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLE-AAGHQIVGIDIRDAEV----------IADLSTAEGRKQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSSSSE----------ECCTTSHHHHHHHHHHHHTTCTTCCSEEEEC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECChHHH----------HHHhcCHHHHHHHHHHHHHHhCCCCcEEEEc
Confidence            3789999999999999999999 6899999999986542          357777765444322        12334444


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILP  132 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~  132 (303)
                      ++....... ...  ....|..+...+.+....
T Consensus        70 Ag~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~   99 (257)
T d1fjha_          70 AGLGPQTKV-LGN--VVSVNYFGATELMDAFLP   99 (257)
T ss_dssp             CCCCTTCSS-HHH--HHHHHTHHHHHHHHHHHH
T ss_pred             CCCCCcHHH-HHH--HHHHHHHHHHHHHHHhhh
Confidence            433222222 222  567777777766665544

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.69  E-value=2.5e-07  Score=77.67  Aligned_cols=105  Identities=12%  Similarity=0.086  Sum_probs=65.1

Q ss_pred             CCEEEEEc--CCChhHHHHHHHHhhcCCCeEEEEecCCcccc---------------c----cCCCeEEEEe--------
Q 042242           28 KNVAVIFG--VTGLVGKELARRLISTANWKVYGIARKPEITA---------------I----QSSSYCFISC--------   78 (303)
Q Consensus        28 ~~~vlVtG--atG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---------------~----~~~~~~~~~~--------   78 (303)
                      +|.+||||  ++..||+.+++.|. +.|.+|++..|......               .    .........+        
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la-~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELS-KRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHH-HcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence            57899999  55699999999999 78999998876532110               0    0011112222        


Q ss_pred             ------------cCCCHHHHHHHH-------hccCceeEEeecc------cccCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042242           79 ------------DLLNPLDIKRKL-------TLLEDVTHIFWVT------WASQFASDMHKCCEQNKAMMCNALNAILPR  133 (303)
Q Consensus        79 ------------D~~~~~~l~~~~-------~~~~~V~~~~~~~------~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~  133 (303)
                                  |+.+.++++.++       ..+|.++|.++..      +.+.+..+....+++|+.++..+++++...
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                        444544343333       3455566664432      122234455568899999999898888776

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.24  E-value=6e-07  Score=64.80  Aligned_cols=64  Identities=19%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      |+|+|+|+ |.+|+.+++.|. +.|++|+++++++....  ....++.++.+|..|++.++++ ++.++
T Consensus         1 M~IvI~G~-G~~G~~la~~L~-~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~   67 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLS-EKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDAD   67 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhh
Confidence            58999995 999999999998 68999999999886543  1223788999999999988776 45555

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.23  E-value=2.9e-06  Score=61.80  Aligned_cols=108  Identities=11%  Similarity=0.056  Sum_probs=71.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc---ccCCC-eEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA---IQSSS-YCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~---~~~~~-~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      .||.|+||+|.+|+.++..|. ..+.  ++.+++.++.+..   ..+.. +.... .........+.++++|.|+..++.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~-~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~-~~~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGVAADLSHIETRATVK-GYLGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEE-EEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CeEEEECCCChHHHHHHHHHH-hCCccceEEEEeccccchhhHHHhhhhhhcCCC-eEEcCCChHHHhCCCCEEEECCCc
Confidence            389999999999999999998 4543  5899998764432   11111 11111 112244566788999976666665


Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242          103 TWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus       103 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      ....  ..+..+.+..|......+++.+.++++..+.+
T Consensus        79 ~~~~--g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iii  114 (144)
T d1mlda1          79 PRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMIC  114 (144)
T ss_dssp             CCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCC--CCCcchHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            3332  22333479999999999999999987654443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.16  E-value=3e-06  Score=64.16  Aligned_cols=68  Identities=18%  Similarity=0.158  Sum_probs=52.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      +|+|+|+|| |++|+++++.|. +.||+|++.+|+..+..   ...........+..+.......+...+.++
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~-~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i   72 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLT-DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVI   72 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHH-TTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeE
Confidence            589999995 999999999998 78999999999987654   123344455566777777777887766444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.99  E-value=4.3e-06  Score=60.21  Aligned_cols=67  Identities=13%  Similarity=0.153  Sum_probs=54.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~~V~   97 (303)
                      |+++|+| .|.+|+.+++.|. +.|++|++++.++.... ....+..++.+|.++++.+.++ ++.++.|+
T Consensus         1 k~~iIiG-~G~~G~~la~~L~-~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           1 KQFAVIG-LGRFGGSIVKELH-RMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHH-HTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEE
Confidence            5789998 5999999999998 68999999999887644 3345677888999999988776 66666333

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.95  E-value=4.7e-05  Score=55.24  Aligned_cols=102  Identities=17%  Similarity=0.030  Sum_probs=67.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCccc--c-----------ccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEIT--A-----------IQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~--~-----------~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      +||.|+||+|.+|+.++..|+ ..+  -++.++++++...  .           ......++...--.+.    +.++++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~-~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~a   75 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLA-KEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDES   75 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTC
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhccc
Confidence            479999999999999999998 455  3799999875321  0           1122333322211222    367778


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKAL  137 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~  137 (303)
                      |.|+..++...  ....+..+.+..|..-...+++.+.+.++..
T Consensus        76 DvVVitAG~~~--~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~  117 (145)
T d1hyea1          76 DVVIITSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTK  117 (145)
T ss_dssp             SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_pred             eEEEEeccccc--CCCCChhhhhhhhHHHHHHHHHHHhccCCCe
Confidence            86666655432  2223344589999999999999998886543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.78  E-value=3.6e-05  Score=55.94  Aligned_cols=101  Identities=10%  Similarity=0.002  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      .+||.|+|+ |++|+.++..|+..+ ..+|.++++++....          .......+..+|.       +.++++|.|
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-------~~~~~adiv   76 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-------SDCKDADLV   76 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-------GGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-------HHhccccEE
Confidence            469999995 999999999998322 257999998865421          1122334445554       246778866


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      +.+++....  ...+..+....|......+.+.+.+.++.-+
T Consensus        77 vitag~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~ai  116 (146)
T d1ez4a1          77 VITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGI  116 (146)
T ss_dssp             EECCCC------------CHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred             EEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcE
Confidence            666554332  2333445789999999999999998865543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.72  E-value=5.9e-05  Score=54.99  Aligned_cols=102  Identities=11%  Similarity=0.054  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      .++||.|+|| |++|+.++..|+... .-++.++++++....           .......+...|.       +.++++|
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~daD   76 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDAD   76 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTCS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccce
Confidence            3579999996 999999999998322 237999998876531           1122344444443       3577788


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      .|+..++...  .......+.+..|..-...+.+.+.++++.-.
T Consensus        77 vvvitag~~~--~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~  118 (148)
T d1ldna1          77 LVVICAGANQ--KPGETRLDLVDKNIAIFRSIVESVMASGFQGL  118 (148)
T ss_dssp             EEEECCSCCC--CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSE
T ss_pred             eEEEeccccc--ccCcchhHHHHHHHHHHHHHHHHHHhhCCCce
Confidence            6665554432  22222334789999999999999988876543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=6.8e-05  Score=54.34  Aligned_cols=104  Identities=13%  Similarity=0.011  Sum_probs=66.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc--CCCeEEEEecCCcccc----ccCC--CeEE-EEecCCCHHHHHHHHhccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLIST--ANWKVYGIARKPEITA----IQSS--SYCF-ISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r~~~~~~----~~~~--~~~~-~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +||.|+|++|.+|+.++..|...  ...++..++..+....    +.+-  .... ....-.+   . +.++++|.|+.+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~---~-~~~~~aDvvvit   76 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA---T-PALEGADVVLIS   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC---H-HHHTTCSEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC---c-cccCCCCEEEEC
Confidence            48999999999999999887522  3567999997643211    1110  1111 1112222   2 368888866666


Q ss_pred             eecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242          100 FWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      ++...  +...+..+.+..|..-...+.+.+.+.+++-+
T Consensus        77 aG~~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~ai  113 (145)
T d2cmda1          77 AGVRR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC  113 (145)
T ss_dssp             CSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred             CCccC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcE
Confidence            55432  22233344799999999999999998876654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.70  E-value=0.00023  Score=53.20  Aligned_cols=102  Identities=11%  Similarity=0.008  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCC-------CeEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTAN-------WKVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g-------~~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      ..+|.|+||+|.||+.++-.|++ +.       .++..++..+....          ...+....+..- .+   ..+.+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~-g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~-~~---~~~~~   98 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLAS-GEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-ID---PYEVF   98 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHH-TTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SC---HHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHc-CcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc-cc---chhhc
Confidence            35899999999999999999983 22       24555555443221          011222222211 22   44688


Q ss_pred             hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 042242           91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKA  136 (303)
Q Consensus        91 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~  136 (303)
                      +++|.|+.+++.  ......+..+.+..|..-...+.+++.+.+++
T Consensus        99 ~~aDvVvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~  142 (175)
T d7mdha1          99 EDVDWALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASK  142 (175)
T ss_dssp             TTCSEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             cCCceEEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            888866666544  33333444458999999999999999987553

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.68  E-value=0.00014  Score=53.40  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=69.1

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHH
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRK   89 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~   89 (303)
                      ++..+.+||.|+|+ |.+|+.++..|. ..+.  ++.++++++....           .......+...|.       +.
T Consensus        15 ~~~~~~~KV~IIGa-G~VG~~~A~~l~-~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-------~~   85 (160)
T d1i0za1          15 EATVPNNKITVVGV-GQVGMACAISIL-GKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-------SV   85 (160)
T ss_dssp             CCCCCSSEEEEECC-SHHHHHHHHHHH-HTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-------GG
T ss_pred             cccCCCCeEEEECC-CHHHHHHHHHHH-hcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-------hh
Confidence            33445679999995 999999999998 4554  6999998765532           1111222222332       24


Q ss_pred             HhccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 042242           90 LTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALK  138 (303)
Q Consensus        90 ~~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~  138 (303)
                      ++++|.|+..++......  .+..+.+..|..-...++..+.+.++.-+
T Consensus        86 ~~~adiVVitAg~~~~~g--~tR~~l~~~N~~i~~~i~~~i~~~~p~ai  132 (160)
T d1i0za1          86 TANSKIVVVTAGVRQQEG--ESRLNLVQRNVNVFKFIIPQIVKYSPDCI  132 (160)
T ss_dssp             GTTCSEEEECCSCCCCTT--CCGGGGHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred             cccccEEEEecCCccccC--cchHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            777886766666543322  22234789999999999999998865543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.65  E-value=0.00019  Score=51.60  Aligned_cols=101  Identities=11%  Similarity=0.005  Sum_probs=66.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCc--ccc----------ccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPE--ITA----------IQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~--~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      .||.|+||+|.+|+.++..|+ ..+.  ++.+++....  ...          .......+...|.   +    .++++|
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~-~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~----~~~~aD   72 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIA-LRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---E----DTAGSD   72 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---G----GGTTCS
T ss_pred             CeEEEECCCCcHHHHHHHHHH-hCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---H----HhhhcC
Confidence            379999999999999999998 3443  5888885321  211          1122344444443   2    356778


Q ss_pred             ceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           95 DVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      .|+..++.+  .....+..+.++.|..-...+.+.+.+.+++-+.
T Consensus        73 iVvitaG~~--~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~  115 (142)
T d1o6za1          73 VVVITAGIP--RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS  115 (142)
T ss_dssp             EEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred             EEEEecccc--cccCCchhhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            655555543  2233344458999999999999999988765443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.65  E-value=0.00017  Score=52.06  Aligned_cols=100  Identities=12%  Similarity=0.030  Sum_probs=61.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----cc-----CCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----IQ-----SSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~~-----~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +||.|+|+ |.+|+.++..|+. .+  -++.++++++....     +.     ........+|       .+.++++|.|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~-~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-------~~~~~~adiv   72 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMAL-RQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD-------YSDVKDCDVI   72 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHH-TTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C-------GGGGTTCSEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHh-cCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc-------HHHhCCCceE
Confidence            58999996 9999999999983 43  37999998876532     11     1122222222       1357777755


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      +..++...  ....+..+.+..|..-...+++.+.+.+++-+.
T Consensus        73 vitag~~~--~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~  113 (142)
T d1y6ja1          73 VVTAGANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI  113 (142)
T ss_dssp             EECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred             EEeccccc--CcCcchhHHhhHHHHHHHHHHHHhhccCCCceE
Confidence            55554432  223334458999999999999999988765543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.64  E-value=1.8e-05  Score=60.48  Aligned_cols=37  Identities=32%  Similarity=0.357  Sum_probs=33.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      |||.|+||+|.+|+.|++.|+ +.||+|++.+|++++.
T Consensus         1 Mki~vigGaG~iG~alA~~la-~~G~~V~l~~R~~e~~   37 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLA-TLGHEIVVGSRREEKA   37 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEEEECCHHHH
Confidence            479999989999999999999 7999999999987653

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=0.00025  Score=51.91  Aligned_cols=101  Identities=11%  Similarity=0.031  Sum_probs=61.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC----e---EEEEecCCcc--cc--------ccCCCeEEEEecCCCHHHHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW----K---VYGIARKPEI--TA--------IQSSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~----~---V~~~~r~~~~--~~--------~~~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      +.||.|+||+|++|++++..|. .++.    +   ...+.-....  ..        ........+...-    ...+.+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   78 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIA-AGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATD----DPKVAF   78 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEES----CHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCC----chhhhc
Confidence            3499999999999999999998 3331    1   2222221111  10        0112233333321    234688


Q ss_pred             hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccC
Q 042242           91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAK  135 (303)
Q Consensus        91 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~  135 (303)
                      +++|.|+.+++..  .....+..+.+..|..-...+.+.+.+.++
T Consensus        79 ~~advViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~  121 (154)
T d1y7ta1          79 KDADYALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAK  121 (154)
T ss_dssp             TTCSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccEEEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8888666665543  233333445899999999999999998754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00053  Score=46.98  Aligned_cols=63  Identities=19%  Similarity=0.268  Sum_probs=50.1

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      ..||.|+| +|.+|+-++.... +-|++|++++..+...... ---+++.+|+.|.+.+.+....+
T Consensus        11 ~~kigIlG-gGQL~rMla~aA~-~lG~~v~v~d~~~~~PA~~-va~~~i~~~~~d~~~l~~~~~~~   73 (111)
T d1kjqa2          11 ATRVMLLG-SGELGKEVAIECQ-RLGVEVIAVDRYADAPAMH-VAHRSHVINMLDGDALRRVVELE   73 (111)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHH-TTTCEEEEEESSTTCGGGG-GSSEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEEe-CCHHHHHHHHHHH-HCCCEEEEEcCCCCCchhh-cCCeEEECCCCCHHHHHHHHHhh
Confidence            45899999 7999999999998 7999999999877653311 12246779999999998887654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.43  E-value=0.0007  Score=48.69  Aligned_cols=101  Identities=12%  Similarity=0.008  Sum_probs=66.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      +||.|+|| |.+|+.++..|+ ..+  .++.++++++....     .      ......+...  .+.    +.++++|.
T Consensus         1 mKI~IIGa-G~VG~~la~~l~-~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~----~~~~dadv   72 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLA-EKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY----ADTANSDI   72 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG----GGGTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHH-hCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH----HHhcCCeE
Confidence            47999996 999999999998 344  47999998876532     0      1123333322  222    34677775


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      |+.+++...  .......+.+..|..-...+.+.+.+.++.-..
T Consensus        73 vvitag~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiv  114 (142)
T d1guza1          73 VIITAGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII  114 (142)
T ss_dssp             EEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             EEEEEecCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence            555554432  222233447899999999999999988765543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.42  E-value=0.00061  Score=48.98  Aligned_cols=101  Identities=11%  Similarity=0.017  Sum_probs=65.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCcccc-----c-----cCCCeEEEEecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPEITA-----I-----QSSSYCFISCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~-----~-----~~~~~~~~~~D~~~~~~l~~~~~~~~~V   96 (303)
                      .||.|+|+ |.+|+.++..|+ ..+  -++.++++++....     +     ......+...+  +.    +.++++|.|
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~-~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~----~~~~daDvV   73 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DP----EICRDADMV   73 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CG----GGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CH----HHhhCCcEE
Confidence            58999996 999999999998 344  37999998875432     0     11222332222  11    246677755


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      +..++..  .....+..+.+..|..-...+.+.+.+.++.-+.
T Consensus        74 VitaG~~--~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~  114 (143)
T d1llda1          74 VITAGPR--QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIY  114 (143)
T ss_dssp             EECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             EEecccc--cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEE
Confidence            5555543  2223333458999999999999999888665443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.00026  Score=51.64  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..++|.|+||.|.+|+.+++.|. +.||+|++.+|++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~-~~G~~V~~~d~~~~~   45 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLR-ASGYPISILDREDWA   45 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHH-TTTCCEEEECTTCGG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHH-HcCCCcEeccccccc
Confidence            34799999999999999999998 789999999998754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.35  E-value=0.00037  Score=50.95  Aligned_cols=105  Identities=9%  Similarity=-0.053  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCC-------CeEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTAN-------WKVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKL   90 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g-------~~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~   90 (303)
                      +.||.|+||+|.+|++++..|+ .++       .++..++.++....          ...+....+.+- .   ...+.+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~-~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~~~~   77 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIG-NGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIAT-D---KEEIAF   77 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHH-TTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEE-S---CHHHHT
T ss_pred             ceEEEEECCCCHHHHHHHHHHH-HHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccC-c---cccccc
Confidence            4699999999999999999997 332       13555554433221          011222222221 1   134678


Q ss_pred             hccCceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           91 TLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        91 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      +++|.|+.+++..  .....+..+.+..|..-...+...+.+.++.-..
T Consensus        78 ~~~dvVVitag~~--~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~  124 (154)
T d5mdha1          78 KDLDVAILVGSMP--RRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK  124 (154)
T ss_dssp             TTCSEEEECCSCC--CCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred             CCceEEEEecccC--CCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceE
Confidence            8888655554432  2222222337899999999999998877554333

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=0.00088  Score=47.97  Aligned_cols=101  Identities=15%  Similarity=-0.001  Sum_probs=65.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCcccc----------ccCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPEITA----------IQSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~----------~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      +||.|+|+ |.+|+.++..|+.+ -.-++.++++++....          .......+...|.       +.++++|.|+
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~-------~~~~~adivv   72 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-------ADLKGSDVVI   72 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-------GGGTTCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH-------HHhcCCCEEE
Confidence            48999996 99999999988732 2247999998765432          1122333333332       3467888665


Q ss_pred             EEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           98 HIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      ..++.....  .....+.+..|..-...+.+.+.+.++.-..
T Consensus        73 itag~~~~~--g~~r~dl~~~N~~I~~~i~~~i~~~~p~aiv  112 (140)
T d1a5za1          73 VAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIV  112 (140)
T ss_dssp             ECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred             EecccccCC--CcchhhhhccccchHHHHHHHHHhcCCCcEE
Confidence            555543322  2223347899999999999999988766543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00017  Score=52.15  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=28.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC---eEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW---KVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~   65 (303)
                      |+|.|+||||++|+.+++.|++++.|   +++.+.++...
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~   41 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG   41 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc
Confidence            68999999999999999988744333   46666655443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.29  E-value=0.00034  Score=52.57  Aligned_cols=36  Identities=17%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +|||.|+| +|.+|..++..|. +.||+|++.+|++..
T Consensus         1 sk~iaIiG-aG~~G~~~A~~l~-~~G~~V~~~~r~~~~   36 (184)
T d1bg6a2           1 SKTYAVLG-LGNGGHAFAAYLA-LKGQSVLAWDIDAQR   36 (184)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            47999999 5999999999998 689999999998654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00012  Score=46.61  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+.+|+|+||+|-+|...++.+. ..|++|+++++++++.
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak-~~G~~Vi~~t~s~~k~   69 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLH-KLGYQVVAVSGRESTH   69 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCGGGH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHH-HcCCeEEEEECCHHHH
Confidence            35689999999999999999877 6899999999987653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.25  E-value=0.00079  Score=48.37  Aligned_cols=101  Identities=9%  Similarity=0.032  Sum_probs=61.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----c------cCCCeEEE-EecCCCHHHHHHHHhccCce
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----I------QSSSYCFI-SCDLLNPLDIKRKLTLLEDV   96 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~------~~~~~~~~-~~D~~~~~~l~~~~~~~~~V   96 (303)
                      +||.|+|+ |.+|+.++..|..+.-.++.+++.++....     .      ......+. ..|.       +.++++|.|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-------~~~~~advv   73 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-------ADTANSDVI   73 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-------GGGTTCSEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-------HHhcCCCEE
Confidence            68999995 999999999887433347999998776532     0      11122222 1222       245667755


Q ss_pred             eEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           97 THIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      +.+++...  ....+..+.+..|..-...+++.+.+.++.-+.
T Consensus        74 vitag~~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aiv  114 (142)
T d1uxja1          74 VVTSGAPR--KPGMSREDLIKVNADITRACISQAAPLSPNAVI  114 (142)
T ss_dssp             EECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEE
T ss_pred             EEeeeccC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceE
Confidence            55555432  223333447899999999999999988665543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00027  Score=51.80  Aligned_cols=102  Identities=14%  Similarity=0.083  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcccc-----c-----c-CCCeEEEEecCCCHHHHHHHHhcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEITA-----I-----Q-SSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~-----~-----~-~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      +..||.|+|+ |.+|+.++..|. ..+.  ++.++++++....     +     . .........|.       +.++++
T Consensus        18 ~~~KI~IIGa-G~VG~~~A~~l~-~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~~~a   88 (159)
T d2ldxa1          18 SRCKITVVGV-GDVGMACAISIL-LKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-------NVSANS   88 (159)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-TTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-------GGGTTE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHH-hcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-------hhhccc
Confidence            4468999995 999999999998 4543  6999998865431     1     1 11222222232       245667


Q ss_pred             CceeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           94 EDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      |.|+..++.....  ..+..+.++.|..-...+...+.+.++.-+.
T Consensus        89 divvitag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~iv  132 (159)
T d2ldxa1          89 KLVIITAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKI  132 (159)
T ss_dssp             EEEEECCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEE
T ss_pred             cEEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence            7555555443322  2222336888999999998888877665443

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.22  E-value=0.00082  Score=48.47  Aligned_cols=104  Identities=13%  Similarity=-0.027  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcC-CCeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTA-NWKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      .|||.|+| +|.+|+.++..|+..+ ..++.++++++.+..           .......+...|.       +.++++|.
T Consensus         1 ~kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-------~~l~~adi   72 (146)
T d1hyha1           1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-------AALADADV   72 (146)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-------GGGTTCSE
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-------HHhccccE
Confidence            37999999 5999999999998322 247999998765531           1112233333332       34677886


Q ss_pred             eeEEeeccccc--CChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           96 VTHIFWVTWAS--QFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        96 V~~~~~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      |+..++..-..  ....+..+.++.|..-...+.+.+.+.++.-+.
T Consensus        73 VVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aiv  118 (146)
T d1hyha1          73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVL  118 (146)
T ss_dssp             EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEE
Confidence            65555432211  112233346889999999999999988765543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.20  E-value=0.002  Score=46.83  Aligned_cols=107  Identities=9%  Similarity=-0.010  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc-----------cCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI-----------QSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~-----------~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      +.+||.|+|+ |.+|+.++..|. ..+. ++.+++.++....-           ........ +. .   ..++.++++|
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~-~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~-~---~~~~~~~~ad   78 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-AE-Y---SYEAALTGAD   78 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-EE-C---SHHHHHTTCS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHH-hCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEe-cc-C---chhhhhcCCC
Confidence            3579999996 999999998777 3443 79999988765320           01111111 11 1   2346778888


Q ss_pred             ceeEEeecccccC---ChHHHHHHHHHHHHHHHHHHHHHhhccCCccEE
Q 042242           95 DVTHIFWVTWASQ---FASDMHKCCEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        95 ~V~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      .|+..++......   ......+.+..|..-...+++.+.+.++.-..+
T Consensus        79 iVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aivi  127 (154)
T d1pzga1          79 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII  127 (154)
T ss_dssp             EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             eEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEE
Confidence            6655554432211   111223478899999999999999887654443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.04  E-value=0.0024  Score=45.74  Aligned_cols=101  Identities=12%  Similarity=0.038  Sum_probs=64.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc-----c------cCCCeEEEE-ecCCCHHHHHHHHhccCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA-----I------QSSSYCFIS-CDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~-----~------~~~~~~~~~-~D~~~~~~l~~~~~~~~~   95 (303)
                      +||.|+|+ |.+|+.++..|+.+.- -++.++++++....     +      ......+.. .|.       +.++++|.
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-------~~~~~adi   72 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-------SLLKGSEI   72 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-------GGGTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-------HHhccccE
Confidence            58999995 9999999998873332 36999998765532     0      111122222 232       36777776


Q ss_pred             eeEEeecccccCChHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           96 VTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        96 V~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      |+..++.+.  ....+..+.+..|..-...+.+.+.+.++.-+.
T Consensus        73 Vvitag~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aiv  114 (142)
T d1ojua1          73 IVVTAGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKI  114 (142)
T ss_dssp             EEECCCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred             EEEeccccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEE
Confidence            555554432  222333448899999999999999988665433

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0007  Score=49.29  Aligned_cols=67  Identities=13%  Similarity=0.065  Sum_probs=51.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----ccCCCeEEEEecCCCHHHHHHHH-hccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----IQSSSYCFISCDLLNPLDIKRKL-TLLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~-~~~~~V~   97 (303)
                      .+|+|+| .|-+|..+++.|. ..|++|++++.++....     ....++.++.+|.+|++.++++- +.++.|+
T Consensus         4 nHiII~G-~g~~g~~l~~~L~-~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           4 DHFIVCG-HSILAINTILQLN-QRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHH-HTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEE
Confidence            4799999 5999999999998 67999999998875421     23468999999999999886653 4444333

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00043  Score=51.05  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=32.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      |||+|+|+ |.+|+.++..|. +.|++|++++|.+...
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~-~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALC-KQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEECSSCCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHH-HCCCceEEEEcCHHHh
Confidence            58999996 999999999998 6899999999987654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0021  Score=48.17  Aligned_cols=73  Identities=12%  Similarity=0.120  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-----c----cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-----I----QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-----~----~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ..+++|+|+| +|..|+.++..|.+ .|. ++++..|++....     .    ..-...+...|+.+.+.+.+.+..+|.
T Consensus        16 l~~k~vlIlG-aGGaarai~~al~~-~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          16 IKGKTMVLLG-AGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHhh-cCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence            3568999999 58999999999994 565 5999999876532     0    112344567899999999999999987


Q ss_pred             eeEEe
Q 042242           96 VTHIF  100 (303)
Q Consensus        96 V~~~~  100 (303)
                      ||++.
T Consensus        94 iIN~T   98 (182)
T d1vi2a1          94 LTNGT   98 (182)
T ss_dssp             EEECS
T ss_pred             ecccc
Confidence            88873

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00051  Score=51.12  Aligned_cols=71  Identities=13%  Similarity=0.082  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+.+|+|+||+|-+|...++.+. ..|.+|+++++++.+.. ....+...+ .|..+.........++|.|+.+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak-~~G~~vi~~~~~~~~~~~~~~lGa~~~-i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVAR-AMGLRVLAAASRPEKLALPLALGAEEA-ATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEESSGGGSHHHHHTTCSEE-EEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCCEEEEEeccccchhhhhhhhc-cccccccccccccccccccccccccee-eehhhhhhhhhccccccccccc
Confidence            46799999999999999999887 68999999998876543 222344332 3544433222334455656654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0024  Score=49.44  Aligned_cols=74  Identities=9%  Similarity=-0.019  Sum_probs=50.2

Q ss_pred             CCCCEEEEEcC----------------CChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHH---
Q 042242           26 DAKNVAVIFGV----------------TGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDI---   86 (303)
Q Consensus        26 ~~~~~vlVtGa----------------tG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l---   86 (303)
                      ..+++||||+|                ||..|.+|++.+. ..|++|+++.-......  ...+.++..  ...+++   
T Consensus         4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~-~~Ga~V~li~g~~~~~~--p~~~~~~~~--~t~~~m~~~   78 (223)
T d1u7za_           4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAA-RRGANVTLVSGPVSLPT--PPFVKRVDV--MTALEMEAA   78 (223)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHH-HTTCEEEEEECSCCCCC--CTTEEEEEC--CSHHHHHHH
T ss_pred             cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHH-HcCCchhhhhcccccCc--cccccccee--hhhHHHHHH
Confidence            35678888875                7999999999999 79999999987654321  235555544  343333   


Q ss_pred             -HHHHhccCceeEEeeccc
Q 042242           87 -KRKLTLLEDVTHIFWVTW  104 (303)
Q Consensus        87 -~~~~~~~~~V~~~~~~~~  104 (303)
                       .+.++.+|.++++|+.+.
T Consensus        79 ~~~~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          79 VNASVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             HHHHGGGCSEEEECCBCCS
T ss_pred             HHhhhccceeEeeeechhh
Confidence             444566776777765543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.78  E-value=0.0012  Score=46.71  Aligned_cols=29  Identities=17%  Similarity=0.370  Sum_probs=25.3

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEE
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYG   58 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~   58 (303)
                      ||.|.|++|-+|+.+++.+.+..++++.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~   29 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSA   29 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence            69999999999999999988678888554

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.74  E-value=0.002  Score=46.33  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=25.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCC---CeEEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTAN---WKVYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~   62 (303)
                      +||.|.||||++|+.+++.|++.+.   .++..++.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~   37 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS   37 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence            4799999999999999998874344   345555543

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.73  E-value=0.00095  Score=50.18  Aligned_cols=36  Identities=17%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      ++.||.|.||||+.|+.|++.|.....+++..+..+
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~   39 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTAD   39 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECS
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEecc
Confidence            456899999999999999999986677887766543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.65  E-value=0.00084  Score=50.31  Aligned_cols=32  Identities=19%  Similarity=0.338  Sum_probs=27.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIA   60 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~   60 (303)
                      .+|.|.|||||+|..|++.|.....++|..+.
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~   33 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALT   33 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence            58999999999999999999855688876664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.65  E-value=0.0003  Score=51.77  Aligned_cols=69  Identities=16%  Similarity=0.099  Sum_probs=48.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+++|+|+|+ |-+|..+++.|. ..|+ +|++..|+..+...  ...+.+.     .+.+.+.+.+..+|.||.+..
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~-~~g~~~i~v~nRt~~ka~~l~~~~~~~~-----~~~~~~~~~l~~~Divi~ats   93 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLV-DRGVRAVLVANRTYERAVELARDLGGEA-----VRFDELVDHLARSDVVVSATA   93 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHH-HHCCSEEEEECSSHHHHHHHHHHHTCEE-----CCGGGHHHHHHTCSEEEECCS
T ss_pred             cccCeEEEECC-CHHHHHHHHHHH-hcCCcEEEEEcCcHHHHHHHHHhhhccc-----ccchhHHHHhccCCEEEEecC
Confidence            45789999996 999999999999 5677 48888888655431  1112222     334567788999996666643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.65  E-value=0.0072  Score=43.48  Aligned_cols=104  Identities=15%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-----c------cCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-----I------QSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-----~------~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ..||.|+|+ |.+|+.++..|. ..+. ++.++++++....     .      ......+...+  +.    +.++++|.
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~-~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~adv   74 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIV-QKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGADV   74 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTCSE
T ss_pred             CCeEEEECC-CHHHHHHHHHHH-hCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCCcE
Confidence            358999995 999999998776 3443 5999998775532     0      11122232222  11    35667775


Q ss_pred             eeEEeeccccc-CC--hHHHHHHHHHHHHHHHHHHHHHhhccCCccE
Q 042242           96 VTHIFWVTWAS-QF--ASDMHKCCEQNKAMMCNALNAILPRAKALKH  139 (303)
Q Consensus        96 V~~~~~~~~~~-~~--~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~~  139 (303)
                      |+.+++..... ..  .....+.+..|......+++.+++.++.-+.
T Consensus        75 vvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aiv  121 (150)
T d1t2da1          75 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFI  121 (150)
T ss_dssp             EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             EEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            55555533221 11  1123347899999999999999988765433

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.64  E-value=0.0017  Score=48.54  Aligned_cols=57  Identities=16%  Similarity=0.229  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      ...+++|.|.| .|-||+.+++.|. .-|.+|++.+|.+.....            .-..++++.++.+|.
T Consensus        39 ~l~gk~vgIiG-~G~IG~~va~~l~-~~g~~v~~~d~~~~~~~~------------~~~~~l~ell~~sDi   95 (181)
T d1qp8a1          39 LIQGEKVAVLG-LGEIGTRVGKILA-ALGAQVRGFSRTPKEGPW------------RFTNSLEEALREARA   95 (181)
T ss_dssp             CCTTCEEEEES-CSTHHHHHHHHHH-HTTCEEEEECSSCCCSSS------------CCBSCSHHHHTTCSE
T ss_pred             cccCceEEEec-cccccccceeeee-ccccccccccccccccce------------eeeechhhhhhccch
Confidence            35689999999 7999999999998 689999999987654221            111246789999984

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.62  E-value=0.00049  Score=51.77  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++.+|||+||+|.+|...++... ..|.+|++++|++++.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak-~~Ga~vi~~~~~~~~~   67 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEKI   67 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHH-ccCCEEEEeCCCHHHH
Confidence            46799999999999999998887 7899999999987654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0012  Score=49.16  Aligned_cols=35  Identities=31%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      .||.|.||||++|..|++.|.+...++|..+..+.
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~   36 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRT   36 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECST
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccc
Confidence            58999999999999999999866778877776443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.004  Score=43.58  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=26.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEE-EEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVY-GIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~-~~~r~   62 (303)
                      +||.|.|++|-.|+.|.+.+. +.++++. .++++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~-~~~~~l~~~id~~   34 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFS-EKGHELVLKVDVN   34 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEEETT
T ss_pred             CEEEEECCCCHHHHHHHHHHh-cCCCeEEEEECCC
Confidence            479999999999999998887 6888955 44443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0029  Score=39.91  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=41.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCH--HHHHHHHhc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNP--LDIKRKLTL   92 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~--~~l~~~~~~   92 (303)
                      |+|.|+| +|.+|+-++..-. .-|++|+.++-.+...... ..-.++..+..+.  ..+.+.++.
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~-~LG~~v~vldp~~~~pa~~-~a~dvIT~e~E~~~~~~l~~~la~   64 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGE-PLGIAVWPVGLDAEPAAVP-FQQSVITAEIERWPETALTRQLAR   64 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHG-GGTEEEEEECTTSCGGGSC-GGGSEEEESSSCCCCCHHHHHHHT
T ss_pred             CEEEEEc-CCHHHHHHHHHHH-HcCCEEEEEcCCCCCcccc-cccceEEEeeccCChHHHHHHHHH
Confidence            7999999 7999999999998 7899999999876543311 1123444554442  344444443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.004  Score=40.89  Aligned_cols=66  Identities=12%  Similarity=0.030  Sum_probs=44.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      ..+|+|+|+|. |--|..+++.|. +.|++|++.+.+.....  .......+..+... .    ..++..|.|+.
T Consensus         3 ~~~K~v~ViGl-G~sG~s~a~~L~-~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~d~vi~   70 (93)
T d2jfga1           3 YQGKNVVIIGL-GLTGLSCVDFFL-ARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLN-D----EWLMAADLIVA   70 (93)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHH-HTTCCCEEEESSSSCTTGGGSCTTSCEEESBCC-H----HHHHHCSEEEE
T ss_pred             cCCCEEEEEeE-CHHHHHHHHHHH-HCCCEEEEeeCCcCchhHHHHhhccceeecccc-h----hhhccCCEEEE
Confidence            46789999995 889999999998 68999999998665322  22344555544432 2    34556664333

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0014  Score=49.66  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +|-++|.|+|| |.+|+.++..++ ..||+|++.++++..
T Consensus         2 ~~IkkvaViGa-G~mG~~iA~~~a-~~G~~V~l~D~~~~~   39 (192)
T d1f0ya2           2 IIVKHVTVIGG-GLMGAGIAQVAA-ATGHTVVLVDQTEDI   39 (192)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             ceeEEEEEECc-CHHHHHHHHHHH-hCCCcEEEEECChHH
Confidence            46689999995 999999999998 689999999998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.37  E-value=0.0012  Score=48.64  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +||.|.| .|.+|+.+++.|. +.||+|++.+|++..
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~-~~g~~V~~~d~~~~~   35 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLR-RRGHYLIGVSRQQST   35 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CEEEEEe-ecHHHHHHHHHHH-HCCCEEEEEECCchH
Confidence            4799998 6999999999998 689999999998654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.27  E-value=0.00096  Score=50.00  Aligned_cols=56  Identities=14%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPL   84 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~   84 (303)
                      .+.+|||+||+|.+|...++.+. ..|.+|+++++++++.. ....+...+ .|..+.+
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~-~~g~~vi~~~~~~~~~~~l~~~Ga~~v-i~~~~~~   81 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAK-MIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVD   81 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCST
T ss_pred             CCCEEEEECCCCCcccccchhhc-cccccceeeeccccccccccccccccc-ccCCccC
Confidence            35799999999999999999887 68999999998766543 233344433 4555543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.26  E-value=0.0013  Score=48.26  Aligned_cols=62  Identities=18%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +||-|+| .|.+|+.+++.|+ +.||+|++.+|++.+.. +...+...    ..   +..++++.+|.|+-+
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~-~~G~~V~~~d~~~~~~~~~~~~~~~~----~~---~~~e~~~~~d~ii~~   63 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLL-KAGYSLVVSDRNPEAIADVIAAGAET----AS---TAKAIAEQCDVIITM   63 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHTTCEE----CS---SHHHHHHHCSEEEEC
T ss_pred             CEEEEEe-hhHHHHHHHHHHH-HCCCeEEEEeCCcchhHHHHHhhhhh----cc---cHHHHHhCCCeEEEE
Confidence            4799999 7999999999999 68999999999876543 22223322    12   345677888844433

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.20  E-value=0.0018  Score=45.48  Aligned_cols=62  Identities=19%  Similarity=0.186  Sum_probs=47.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHH-HhccC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRK-LTLLE   94 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~-~~~~~   94 (303)
                      |+|+|+| -|-+|+.+++.|.   +++|.+++.++.... ....++.++.+|.++++.|+++ +..++
T Consensus         1 kHivI~G-~g~~g~~l~~~L~---~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~   64 (129)
T d2fy8a1           1 RHVVICG-WSESTLECLRELR---GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGAR   64 (129)
T ss_dssp             CCEEEES-CCHHHHHHHHTSC---GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHc---CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCc
Confidence            5789999 6999999999984   457888888776543 3446899999999999887664 33444

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.18  E-value=0.0044  Score=42.58  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .+++++|.| +|++|..++..|. ..|.+|+++.|.+.
T Consensus        21 ~p~~v~IiG-gG~ig~E~A~~l~-~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIG-GGYIGIELGTAYA-NFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSSS
T ss_pred             cCCeEEEEC-CCccceeeeeeec-ccccEEEEEEecce
Confidence            357999999 6999999999998 68999999998874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0031  Score=46.74  Aligned_cols=60  Identities=17%  Similarity=0.145  Sum_probs=41.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKR   88 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~   88 (303)
                      .+.+|||+||+|-+|...++.+. ..|.+|+++++++.+.. ....+...+ .|..+.+..++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~-~~G~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~   88 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIAR-AYGLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDK   88 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHH
T ss_pred             CCCEEEEEecccccccccccccc-ccCcccccccccccccccccccCcccc-cccccccHHHH
Confidence            45799999999999999999887 68999999998765432 222334322 46666543333

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.06  E-value=0.0046  Score=42.82  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .++|+|.| +|++|..++..|. +.|.+|+++.|.+.
T Consensus        30 ~~~vvIIG-gG~iG~E~A~~l~-~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVG-GGVIGLELAATAR-TAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSSS
T ss_pred             CCeEEEEC-cchhHHHHHHHhh-cccceEEEEeeccc
Confidence            47999999 6999999999998 68999999999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0052  Score=42.60  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .+++++|.| +|+||-.++..|. ..|.+|+++.|.+.-
T Consensus        22 ~p~~~vIiG-~G~ig~E~A~~l~-~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          22 IPKRLTIIG-GGIIGLEMGSVYS-RLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSSSS
T ss_pred             CCCeEEEEC-CCchHHHHHHHHH-hhCcceeEEEecccc
Confidence            357999999 6999999999998 789999999998743

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.96  E-value=0.0053  Score=42.23  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .++|+|.| +|++|-.++..|. ..|.+|+++.|.+.
T Consensus        22 p~~v~IiG-gG~iG~E~A~~l~-~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVG-SGYIAVELINVIK-RLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHH-TTTCEEEEECSSSS
T ss_pred             CCEEEEEC-CchHHHHHHHHHH-hccccceeeehhcc
Confidence            47999999 6999999999998 78999999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0018  Score=47.78  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      .+.+|+|+|+ |.+|...++.+. ..|.+|+++++++.+..
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak-~~G~~vi~~~~~~~k~~   65 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISK-AMGAETYVISRSSRKRE   65 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHH-HHTCEEEEEESSSTTHH
T ss_pred             CCCEEEEECC-CCcchhHHHHhh-hccccccccccchhHHH
Confidence            4679999996 999999888776 67899999999877643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.96  E-value=0.0063  Score=42.23  Aligned_cols=36  Identities=31%  Similarity=0.328  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ..++|+|.| +|++|..++..|. ..|.+|+++.|.+.
T Consensus        29 ~~k~vvViG-gG~iG~E~A~~l~-~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIG-SGYIGIEAAEAFA-KAGKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSSS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHhh-ccceEEEEEEecCc
Confidence            357999999 6999999999998 68999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.91  E-value=0.0053  Score=43.91  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhh--cCCCeEEEEecCCc
Q 042242           29 NVAVIFGVTGLVGKELARRLIS--TANWKVYGIARKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~--~~g~~V~~~~r~~~   64 (303)
                      ++|.|.||||++|+.+++.|.+  ....++..+..+..
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~   40 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES   40 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc
Confidence            5899999999999999999962  23557777665443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.91  E-value=0.01  Score=40.40  Aligned_cols=56  Identities=16%  Similarity=0.038  Sum_probs=42.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---ccCCCeEEEEecCCC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---IQSSSYCFISCDLLN   82 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~D~~~   82 (303)
                      ...+|+|+|+| +|-+|..-++.|+ +.|.+|++++.......   ....+++++.....+
T Consensus         9 ~l~~k~vlVvG-~G~va~~ka~~ll-~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~   67 (113)
T d1pjqa1           9 QLRDRDCLIVG-GGDVAERKARLLL-EAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE   67 (113)
T ss_dssp             CCBTCEEEEEC-CSHHHHHHHHHHH-HTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG
T ss_pred             EeCCCEEEEEC-CCHHHHHHHHHHH-HCCCeEEEEeccCChHHHHHHhcCCceeeccCCCH
Confidence            34679999999 6999999999999 68999999987665432   234567777655543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0052  Score=42.18  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      +++|+|.| +|++|..++..|. +.|.+|+++.|.+.
T Consensus        21 p~~vvIiG-gG~ig~E~A~~l~-~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVG-AGYIGVELGGVIN-GLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSSS
T ss_pred             CCEEEEEC-CChhhHHHHHHhh-ccccEEEEEeecch
Confidence            47999999 6999999999998 68999999999864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.88  E-value=0.0029  Score=46.64  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=33.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      +.+|||+||+|-+|...++... ..|.+|+++++++.+..
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk-~~Ga~Viat~~s~~k~~   62 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLN-KRGYDVVASTGNREAAD   62 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHH-HHTCCEEEEESSSSTHH
T ss_pred             CCEEEEeCCcchHHHHHHHHHH-HcCCceEEEecCHHHHH
Confidence            3479999999999999998876 68999999999887643

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.87  E-value=0.003  Score=47.87  Aligned_cols=64  Identities=13%  Similarity=0.036  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|.| .|.||+.+++.|. .-|.+|++.++....... ...        ....++.+.++.+|. ++|+
T Consensus        40 el~gk~vgIiG-~G~IG~~va~~l~-~fg~~V~~~d~~~~~~~~-~~~--------~~~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          40 EVRDQVVGVVG-TGHIGQVFMQIME-GFGAKVITYDIFRNPELE-KKG--------YYVDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             CGGGSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCCHHHH-HTT--------CBCSCHHHHHHHCSEEEECS
T ss_pred             cccCCeEEEec-ccccchhHHHhHh-hhcccccccCcccccccc-cce--------eeeccccccccccccccccC
Confidence            34679999999 8999999999997 789999999876543221 111        122357788888884 4444

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.83  E-value=0.0078  Score=41.43  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .+++++|.| +|+||-.++..|. ..|.+|+++.|.+.-
T Consensus        21 ~p~~i~IiG-~G~ig~E~A~~l~-~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          21 VPGKLGVIG-AGVIGLELGSVWA-RLGAEVTVLEAMDKF   57 (119)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSSSS
T ss_pred             CCCeEEEEC-CChHHHHHHHHHH-HcCCceEEEEeeccc
Confidence            458999999 6999999999998 689999999988643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.77  E-value=0.0057  Score=41.85  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .+++++|.| +|++|-.++..|. +.|++|+++.|.+.
T Consensus        20 ~p~~vvIiG-gG~~G~E~A~~l~-~~g~~Vtlve~~~~   55 (115)
T d1lvla2          20 LPQHLVVVG-GGYIGLELGIAYR-KLGAQVSVVEARER   55 (115)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHH-HHTCEEEEECSSSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHh-hcccceEEEeeecc
Confidence            357999999 6999999999998 68999999988764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.75  E-value=0.0035  Score=45.89  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.++| .|.+|+.+++.|+ +.||+|++.+|++.+.
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~-~~g~~v~~~d~~~~~~   37 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLL-KAGYLLNVFDLVQSAV   37 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEEEECSSHHHH
T ss_pred             CEEEEEE-EHHHHHHHHHHHH-HCCCeEEEEECchhhh
Confidence            5899999 8999999999999 6899999999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.71  E-value=0.0037  Score=46.62  Aligned_cols=68  Identities=18%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc---c------cCCCeEEEEecCCCHHHHHHHHhccCceeE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA---I------QSSSYCFISCDLLNPLDIKRKLTLLEDVTH   98 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~------~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~   98 (303)
                      |+|.|+| +|..|..++..|. +.|++|++..|...+..   .      ..........++.-..++.++++.+|.|+.
T Consensus         1 MkI~ViG-aG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILG-AGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEES-CCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhc
Confidence            5899999 6999999999998 68899999998543311   0      001111112223334567889998884433

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.68  E-value=0.0046  Score=44.81  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=24.1

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCC---eEEEEec
Q 042242           30 VAVIFGVTGLVGKELARRLISTANW---KVYGIAR   61 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r   61 (303)
                      +|.|.||||++|..|++.|. ++.+   ++..++.
T Consensus         3 kVaIvGATGyvG~eLirlL~-~H~fp~~~l~~~~s   36 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLE-ESTLPIDKIRYLAS   36 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-TCCSCEEEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHH-cCCCCceEEEEecc
Confidence            79999999999999999887 4533   3555543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.66  E-value=0.0067  Score=42.01  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      .+++++|.| +|+||..+++.|. +.|.+|+++.|+
T Consensus        19 ~P~~vvIIG-gG~iG~E~A~~l~-~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVG-ASYVALECAGFLA-GIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEEC-CSHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred             CCCeEEEEC-CCccHHHHHHHHh-hcCCeEEEEEec
Confidence            357899999 6999999999998 689999999875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.65  E-value=0.0044  Score=46.05  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      +.+|||+||+|.+|...++... ..|.+|+++++++.+..
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak-~~Ga~Viat~~s~~k~~   70 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLA-KRGYTVEASTGKAAEHD   70 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCTTCHH
T ss_pred             CCEEEEEeccchHHHHHHHHHH-HcCCceEEecCchHHHH
Confidence            5689999999999999999887 68999999999877643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.65  E-value=0.0075  Score=42.45  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .++|+|.| +|++|..++..|. ..|.+|+++.+.+.
T Consensus        35 ~k~v~VIG-gG~iG~E~A~~l~-~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          35 DNRLVVIG-GGYIGLEVAATAI-KANMHVTLLDTAAR   69 (133)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSSS
T ss_pred             CCEEEEEC-CchHHHHHHHHHH-hhCcceeeeeeccc
Confidence            57999999 6999999999998 68999999999864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.64  E-value=0.0043  Score=45.70  Aligned_cols=35  Identities=31%  Similarity=0.647  Sum_probs=29.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC--eEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW--KVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~   65 (303)
                      |+|+|+| .|.+|..+++.|. +.|+  +|++.+|++..
T Consensus         2 k~I~IIG-~G~mG~sla~~L~-~~g~~~~I~~~D~~~~~   38 (171)
T d2g5ca2           2 QNVLIVG-VGFMGGSFAKSLR-RSGFKGKIYGYDINPES   38 (171)
T ss_dssp             CEEEEES-CSHHHHHHHHHHH-HTTCCSEEEEECSCHHH
T ss_pred             CEEEEEc-cCHHHHHHHHHHH-hcCCCeEEEEEECChHH
Confidence            6899999 6999999999998 5665  68888888654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.005  Score=45.76  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      .+|||+||+|.+|...++... ..|.+|++++|++.+..
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk-~~Ga~Via~~~~~~k~~   70 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLH-KLGYQVVAVSGRESTHE   70 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCGGGHH
T ss_pred             CcEEEEEccccchHHHHHHHH-HcCCCeEEEecchhHHH
Confidence            589999999999999999887 68999999999887643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.60  E-value=0.0068  Score=41.96  Aligned_cols=35  Identities=37%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .++++|.| +|++|-.++..|. ..|++|+++.|.+.
T Consensus        32 ~~~vvIiG-gG~iG~E~A~~l~-~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIG-GGFIGLELAGNLA-EAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEE-CSHHHHHHHHHHH-HTTCEEEEECSSSC
T ss_pred             CCcEEEEC-CcHHHHHHHHHhh-cccceEEEEecccc
Confidence            36899999 6999999999998 68999999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.008  Score=41.76  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      +|+++|.| +|+||-.++..|. ..|.+|+++.|.+.
T Consensus        22 pk~vvIvG-gG~iG~E~A~~l~-~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVG-AGYIAVEMAGILS-ALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSSS
T ss_pred             CCEEEEEc-CCccHHHHHHHHh-cCCcEEEEEeeccc
Confidence            47999999 6999999999998 68999999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0027  Score=47.25  Aligned_cols=60  Identities=10%  Similarity=0.046  Sum_probs=42.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHH
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKR   88 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~   88 (303)
                      .+.+|+|+||+|.+|..+++... ..|.+|+++++++.+.. ....+...+ .|..+.+..++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak-~~Ga~Vi~~~~s~~k~~~~~~lGa~~v-i~~~~~d~~~~   88 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGTAQKAQSALKAGAWQV-INYREEDLVER   88 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHH-HHTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHH
T ss_pred             CCCEEEEEccccccchHHHHHHH-HhCCeEeecccchHHHHHHHhcCCeEE-EECCCCCHHHH
Confidence            35799999999999999999887 68899999999987643 222233332 46666443333

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.54  E-value=0.0064  Score=46.19  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |||.|.| .|++|..++..|. +.||+|++++.++..
T Consensus         1 MkI~ViG-lG~vGl~~a~~la-~~g~~V~g~D~n~~~   35 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLS-ARGHEVIGVDVSSTK   35 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CEEEEEC-CCHhHHHHHHHHH-hCCCcEEEEeCCHHH
Confidence            4799998 7999999999998 689999999987644

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.004  Score=45.82  Aligned_cols=71  Identities=8%  Similarity=0.027  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEEe
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIF  100 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~  100 (303)
                      .+.+|+|.|+ |-||...++.+. ..|.+++++++++.+.. ....+... ..|..+........++.|.++.+.
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak-~~Ga~~i~~~~~~~~~~~a~~lGad~-~i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAH-AMGAHVVAFTTSEAKREAAKALGADE-VVNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHTCSE-EEETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCCEEEEecc-chHHHHHHHHhh-cccccchhhccchhHHHHHhccCCcE-EEECchhhHHHHhcCCCceeeeee
Confidence            4679999995 889999998887 68999889998776543 12223332 257777766666666677666554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.48  E-value=0.0068  Score=45.94  Aligned_cols=63  Identities=13%  Similarity=0.146  Sum_probs=45.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|.| .|-||+.+++.|. .-|.+|++.++......  ...+.     .   .++.+.++.+|. ++|+
T Consensus        42 ~l~~ktvgIiG-~G~IG~~va~~l~-~fg~~v~~~d~~~~~~~--~~~~~-----~---~~l~~l~~~~D~v~~~~  105 (199)
T d1dxya1          42 ELGQQTVGVMG-TGHIGQVAIKLFK-GFGAKVIAYDPYPMKGD--HPDFD-----Y---VSLEDLFKQSDVIDLHV  105 (199)
T ss_dssp             CGGGSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCCSSC--CTTCE-----E---CCHHHHHHHCSEEEECC
T ss_pred             cccceeeeeee-ccccccccccccc-ccceeeeccCCccchhh--hcchh-----H---HHHHHHHHhcccceeee
Confidence            34578999999 8999999999998 68999999998765422  11221     1   246778888884 4444

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.42  E-value=0.0076  Score=45.02  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...++++.|.| .|.||+.+++.|. .-|.+|++.+|...+.......++.        .+++++++.+|. ++|+
T Consensus        41 ~l~~k~vgiiG-~G~IG~~va~~~~-~fg~~v~~~d~~~~~~~~~~~~~~~--------~~l~ell~~sDiv~~~~  106 (184)
T d1ygya1          41 EIFGKTVGVVG-LGRIGQLVAQRIA-AFGAYVVAYDPYVSPARAAQLGIEL--------LSLDDLLARADFISVHL  106 (184)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEECTTSCHHHHHHHTCEE--------CCHHHHHHHCSEEEECC
T ss_pred             cccceeeeecc-ccchhHHHHHHhh-hccceEEeecCCCChhHHhhcCcee--------ccHHHHHhhCCEEEEcC
Confidence            34678999999 7999999999998 6888999999876543211112221        246688999994 4454

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.36  E-value=0.0078  Score=45.30  Aligned_cols=66  Identities=15%  Similarity=0.026  Sum_probs=46.5

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|.| .|-||+.+++.|. .-|.+|++.++..........++       ....++.++++.+|. ++|+
T Consensus        46 eL~gktvgIiG-~G~IG~~va~~l~-~fg~~v~~~d~~~~~~~~~~~~~-------~~~~~l~~ll~~sD~i~~~~  112 (193)
T d1mx3a1          46 RIRGETLGIIG-LGRVGQAVALRAK-AFGFNVLFYDPYLSDGVERALGL-------QRVSTLQDLLFHSDCVTLHC  112 (193)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEECTTSCTTHHHHHTC-------EECSSHHHHHHHCSEEEECC
T ss_pred             eeeCceEEEec-cccccccceeeee-ccccceeeccCcccccchhhhcc-------ccccchhhccccCCEEEEee
Confidence            34678999999 7999999999998 78999999998754422111111       112357788888884 4444

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0087  Score=44.86  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=45.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|.| .|.||+.+++.|. .-|.+|+..++......   ...  .  .+   +++++.++.+|. ++|+
T Consensus        41 ~l~~~~vgiiG-~G~IG~~va~~l~-~fg~~v~~~d~~~~~~~---~~~--~--~~---~~l~ell~~sDii~i~~  104 (188)
T d1sc6a1          41 EARGKKLGIIG-YGHIGTQLGILAE-SLGMYVYFYDIENKLPL---GNA--T--QV---QHLSDLLNMSDVVSLHV  104 (188)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCCCCC---TTC--E--EC---SCHHHHHHHCSEEEECC
T ss_pred             cccceEEEEee-cccchhhhhhhcc-cccceEeeccccccchh---hhh--h--hh---hhHHHHHhhccceeecc
Confidence            34678999999 8999999999997 78999999998654321   111  1  11   257788888884 3344

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.023  Score=42.06  Aligned_cols=38  Identities=18%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ..+.|+|+|.| +|..|...+..|. ..||+|+++.+.+.
T Consensus        40 ~~~~k~V~IIG-aGPAGL~AA~~la-~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          40 AVQKKNLAVVG-AGPAGLAFAINAA-ARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSSCCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEESSSS
T ss_pred             CCCCcEEEEEC-ccHHHHHHHHHHH-hhccceEEEeccCc
Confidence            34568999999 6999999999998 79999999998764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.30  E-value=0.0043  Score=46.67  Aligned_cols=36  Identities=33%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ++||.|+| +|..|++++..|. +.|++|++.+|++..
T Consensus         7 m~KI~ViG-aG~wGtAlA~~La-~~g~~V~l~~r~~~~   42 (189)
T d1n1ea2           7 LNKAVVFG-SGAFGTALAMVLS-KKCREVCVWHMNEEE   42 (189)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHH-TTEEEEEEECSCHHH
T ss_pred             eceEEEEC-CCHHHHHHHHHHH-HcCCeEEEEEecHHH
Confidence            36899999 6999999999998 789999999987643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.032  Score=40.42  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCceeEEee
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLEDVTHIFW  101 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~  101 (303)
                      ..+|+|+|.|.+..+|+.++..|. +.|..|+.+.....                    .+.+.++.+|.|+..++
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~-~~gatVt~~h~~t~--------------------~l~~~~~~ADivI~a~G   89 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELL-LAGCTTTVTHRFTK--------------------NLRHHVENADLLIVAVG   89 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHH-TTTCEEEEECSSCS--------------------CHHHHHHHCSEEEECSC
T ss_pred             cccceEEEEeccccccHHHHHHHH-Hhhccccccccccc--------------------hhHHHHhhhhHhhhhcc
Confidence            468999999999999999999998 68888887654432                    24466777886665544

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.0097  Score=43.38  Aligned_cols=37  Identities=16%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeE-EEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKV-YGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V-~~~~r~~~   64 (303)
                      ..||.|.|++|-+|+.|++.+.+..++++ -+++|...
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~   41 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS   41 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccc
Confidence            45899999999999999999987788894 45555543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.10  E-value=0.0044  Score=46.51  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ++|.|+|+ |.+|+.++..++ ..|++|++.++++..
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a-~~G~~V~l~D~~~~~   39 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSA-SKGTPILMKDINEHG   39 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHH-HTTCCEEEECSSHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHH-hCCCeEEEEECCHHH
Confidence            68999995 999999999998 689999999998654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.09  E-value=0.0052  Score=45.62  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|-|+| .|.+|..+++.|+ +.||+|++.+|++++.
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~-~~G~~V~~~dr~~~~~   37 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIA-EKGFKVAVFNRTYSKS   37 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSHHHH
T ss_pred             CEEEEEe-ehHHHHHHHHHHH-HCCCeEEEEECCHHHH
Confidence            4699999 8999999999999 6899999999987664

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.01  E-value=0.015  Score=45.28  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      .++|+|+| +|..|...+..|. +.|++|+++.|..
T Consensus         6 ~~kVvVIG-aGiaGl~~A~~L~-~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLG-SGVIGLSSALILA-RKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESSC
T ss_pred             CCcEEEEC-ccHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            46899999 6999999999998 6899999999865

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.01  E-value=0.012  Score=40.87  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +++++|.| +|+||-.++..|. ..|.+|+++.|.+.-
T Consensus        26 p~~vvIiG-gG~IG~E~A~~~~-~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIG-GGIIGLEMGTVYS-TLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEES-CSHHHHHHHHHHH-HHTCEEEEECSSSSS
T ss_pred             CCeEEEEC-CCHHHHHHHHHhh-cCCCEEEEEEeeccc
Confidence            57999999 6999999999998 689999999998643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.97  E-value=0.0092  Score=41.31  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      .+++++|.| +|+||-.++..|. ..|.+|+++.|.+.-
T Consensus        24 ~p~~~viiG-~G~iglE~A~~~~-~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIG-AGYIGLEMGSVWG-RIGSEVTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESC-CSHHHHHHHHHHH-HHTCEEEEECSSSSS
T ss_pred             cCCeEEEEc-cchHHHHHHHHHH-hcCCeEEEEEEcccc
Confidence            357999999 6999999999998 689999999998754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.94  E-value=0.012  Score=42.40  Aligned_cols=62  Identities=15%  Similarity=0.063  Sum_probs=41.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      +||-|+| .|.+|+.+++.|+ +.||+|++.+|++.+.. ....++.+.  +     +..++++.+|.|+-+
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~--~-----~~~e~~~~~diIi~~   63 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLR-SRGVEVVTSLEGRSPSTIERARTVGVT--E-----TSEEDVYSCPVVISA   63 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHH-HTTCEEEECCTTCCHHHHHHHHHHTCE--E-----CCHHHHHTSSEEEEC
T ss_pred             CEEEEEc-HHHHHHHHHHHHH-HCCCeEEEEcCchhHHHHHhhhccccc--c-----cHHHHHhhcCeEEEE
Confidence            4799998 7999999999999 68999999888765532 111111111  1     234678888844433

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.94  E-value=0.0094  Score=42.94  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ++|.+.| +|.+|+++++.|++.++++|++.+|++++.
T Consensus         1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~   37 (152)
T d1yqga2           1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKR   37 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHH
Confidence            4799999 599999999999855558999999987654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.047  Score=39.80  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      +..+|+|+|.|.+..+|+.++..|. +.|..|+.+..+..
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~-~~gatVt~~~~~t~   74 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLL-WNNATVTTCHSKTA   74 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHH-HTTCEEEEECTTCS
T ss_pred             ccccceEEEEecCCccchHHHHHHH-hccCceEEEecccc
Confidence            3468999999999999999999998 67888887766543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.89  E-value=0.019  Score=39.31  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .++|+|.| +|+||..++..|. ..|.+|+++.|.+.
T Consensus        22 ~~~vvVvG-gG~ig~E~A~~l~-~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          22 GSTVVVVG-GSKTAVEYGCFFN-ATGRRTVMLVRTEP   56 (121)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSCT
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hcchhheEeeccch
Confidence            57999999 6999999999998 68989999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.87  E-value=0.025  Score=41.24  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      .+.+|+|+| +|.||...++.+. ..|.+|+++++++.+..
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak-~~Ga~vi~v~~~~~r~~   64 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAK-AYGAFVVCTARSPRRLE   64 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEEc-ccccchhhHhhHh-hhcccccccchHHHHHH
Confidence            456899998 6999999998887 68899999999877643

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.81  E-value=0.011  Score=42.58  Aligned_cols=60  Identities=10%  Similarity=0.087  Sum_probs=41.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc--cCCCeEEEEecCCCHHHHHHHHhccCcee
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI--QSSSYCFISCDLLNPLDIKRKLTLLEDVT   97 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~~~~V~   97 (303)
                      +||.+.| +|.+|+++++.|+ +.+++|++..|++++...  ...++.+.    .   +.+++++.+|.|+
T Consensus         1 MkIg~IG-~G~mG~al~~~l~-~~~~~i~v~~r~~~~~~~l~~~~g~~~~----~---~~~~~~~~~dvIi   62 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLK-QTPHELIISGSSLERSKEIAEQLALPYA----M---SHQDLIDQVDLVI   62 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHT-TSSCEEEEECSSHHHHHHHHHHHTCCBC----S---SHHHHHHTCSEEE
T ss_pred             CEEEEEe-ccHHHHHHHHHHH-hCCCeEEEEcChHHhHHhhccccceeee----c---hhhhhhhccceee
Confidence            4799999 8999999999998 679999999998665331  11122211    1   3456777887433

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.79  E-value=0.019  Score=46.66  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      +|+|+|+| +|+-|...|..|. +.|++|+++.++..
T Consensus         2 ~KKI~IIG-aG~sGL~aA~~L~-k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVG-AGFSGAVIGRQLA-EKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEESSSS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHH-hCCCCEEEEECCCC
Confidence            58999999 6999999999998 68999999998764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.71  E-value=0.019  Score=44.85  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ..+||+|+| +|..|..++..|. +.|++|+++.|.+.
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~-~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLR-DAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSSS
T ss_pred             CCCcEEEEC-cCHHHHHHHHHHH-HCCCCEEEEeCCCC
Confidence            457999999 6999999999998 68999999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.59  E-value=0.025  Score=41.89  Aligned_cols=39  Identities=26%  Similarity=0.133  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~   67 (303)
                      .+.+|+|+|+ |-||...++.+. ..|. +|+++++++.+..
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak-~~Ga~~Vi~~~~~~~~~~   67 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIAR-SLGAENVIVIAGSPNRLK   67 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHH-HTTBSEEEEEESCHHHHH
T ss_pred             CCCEEEEECC-Cccchhheeccc-cccccccccccccccccc
Confidence            3679999996 899999999887 6787 6999999877643

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.53  E-value=0.016  Score=41.46  Aligned_cols=36  Identities=14%  Similarity=0.335  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~   63 (303)
                      +|+|.|+|+||-||...+.-+.+. ..|+|.+++=..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            489999999999999999988632 358888776543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.016  Score=42.52  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+|+|+|+| +|..+++++..|. ..|.+|+++.|+.++.
T Consensus        17 ~~k~vlIlG-aGGaarai~~al~-~~g~~i~I~nRt~~ka   54 (170)
T d1nyta1          17 PGLRILLIG-AGGASRGVLLPLL-SLDCAVTITNRTVSRA   54 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHhc-ccceEEEeccchHHHH
Confidence            568999999 5889999999998 5788999999987653

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.021  Score=40.85  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=27.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLIST-ANWKVYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~   62 (303)
                      |+|.|+|+||-||...+.-+.+. ..++|.+++=.
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            68999999999999999988743 35788877654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.40  E-value=0.012  Score=47.64  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      ....|+|+|+| +|..|...+..|. +.|++|+++.+.+
T Consensus        27 ~~~pkkV~IIG-aG~aGLsaA~~L~-~~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVG-AGMAGLSAAYVLA-GAGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEEC-CBHHHHHHHHHHH-HHTCEEEEECSSS
T ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            33468999999 6999999999998 6899999999865

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.27  E-value=0.015  Score=43.01  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=45.5

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCe--EEEEecCCCHHHHHHHHhccCceeEE
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSY--CFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~--~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .++|-|+| -|.+|+.+++.|+ +.||+|++.+|++++.. +...+.  ... .-....+.+.+.+...+.++-+
T Consensus         2 ~~nIg~IG-lG~MG~~mA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIG-LAVMGQNLILNMN-DHGFVVCAFNRTVSKVDDFLANEAKGTKV-LGAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSTHHHHHHHHTTTTTSSC-EECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEe-EhHHHHHHHHHHH-HCCCeEEEEcCCHHHHHHHHHhccccccc-cchhhhhhhhhhhcccceEEEe
Confidence            35799999 7999999999999 68999999999987643 111110  000 1134555666666666644333

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.26  E-value=0.13  Score=37.45  Aligned_cols=76  Identities=12%  Similarity=-0.022  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCC-----CeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSS-----SYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      ...+|+|+|.|.|..+|+.++..|+ +.|..|+.+..+.........     ............+.+++....+|+|+..
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~-~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa  104 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLA-NDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG  104 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHH-TTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECCccccHHHHHHHHH-HCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence            4578999999999999999999998 688889877654322110000     1111111123456688888888866655


Q ss_pred             ee
Q 042242          100 FW  101 (303)
Q Consensus       100 ~~  101 (303)
                      ++
T Consensus       105 vG  106 (171)
T d1edza1         105 VP  106 (171)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.24  E-value=0.011  Score=42.96  Aligned_cols=71  Identities=20%  Similarity=0.149  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-c---CCCeEEEEecCCCHHHHHHHHhccCceeEEeec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-Q---SSSYCFISCDLLNPLDIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~---~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~~~~  102 (303)
                      ...+|+|+| .|-.|..-++... .-|-+|++++.+...... +   ...++   .-..+.+.+.+.++.+|.||..+..
T Consensus        31 ~pa~V~ViG-aGvaG~~A~~~A~-~lGA~V~~~D~~~~~l~~l~~~~~~~~~---~~~~~~~~l~~~~~~aDivI~aali  105 (168)
T d1pjca1          31 KPGKVVILG-GGVVGTEAAKMAV-GLGAQVQIFDINVERLSYLETLFGSRVE---LLYSNSAEIETAVAEADLLIGAVLV  105 (168)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGSE---EEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCcEEEEEC-CChHHHHHHHHHh-hCCCEEEEEeCcHHHHHHHHHhhcccce---eehhhhhhHHHhhccCcEEEEeeec
Confidence            457999999 6999999999998 689999999998765431 1   11232   3356778899999999977766543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.01  E-value=0.012  Score=44.12  Aligned_cols=66  Identities=14%  Similarity=0.109  Sum_probs=45.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ..++++.|.| .|.||+.+++.|. .-|.+|...++..........      ......+++.++++.+|. ++|+
T Consensus        45 l~g~tvgIiG-~G~IG~~va~~l~-~fg~~v~~~d~~~~~~~~~~~------~~~~~~~~l~~ll~~sD~v~l~~  111 (191)
T d1gdha1          45 LDNKTLGIYG-FGSIGQALAKRAQ-GFDMDIDYFDTHRASSSDEAS------YQATFHDSLDSLLSVSQFFSLNA  111 (191)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEECSSCCCHHHHHH------HTCEECSSHHHHHHHCSEEEECC
T ss_pred             ecccceEEee-cccchHHHHHHHH-hhccccccccccccccchhhc------ccccccCCHHHHHhhCCeEEecC
Confidence            3578999999 7999999999997 789999999876543221000      001112357788998884 4444

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.99  E-value=0.011  Score=44.27  Aligned_cols=66  Identities=11%  Similarity=0.004  Sum_probs=44.7

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccccc-cCCCeEEEEecCCCHHHHHHHHhccCc-eeEE
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITAI-QSSSYCFISCDLLNPLDIKRKLTLLED-VTHI   99 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~~~~-V~~~   99 (303)
                      ...+++|.|.| .|.||+.+++.|. .-|.+|...+|....... ...+       +....++.+.++.+|. ++|+
T Consensus        41 ~l~~~~vgiiG-~G~IG~~va~~l~-~fg~~v~~~d~~~~~~~~~~~~~-------~~~~~~l~~~l~~sD~v~~~~  108 (188)
T d2naca1          41 DLEAMHVGTVA-AGRIGLAVLRRLA-PFDVHLHYTDRHRLPESVEKELN-------LTWHATREDMYPVCDVVTLNC  108 (188)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHG-GGTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHGGGCSEEEECS
T ss_pred             eccccceeecc-ccccchhhhhhhh-ccCceEEEEeecccccccccccc-------ccccCCHHHHHHhccchhhcc
Confidence            34578999999 7999999999998 688899999986543211 0011       1122346677888884 3444

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.96  E-value=0.031  Score=44.35  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      .|||+|+| +|.-|...+.+|. +.|++|+++.+++
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La-~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLK-IHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-TTSCEEEEECSSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-hCCCCEEEEeCCC
Confidence            48999999 6999999999998 7899999999765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.92  E-value=0.017  Score=42.28  Aligned_cols=38  Identities=16%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   66 (303)
                      .+++|+|+| +|..|++++..|. +.|. +|+++.|+..+.
T Consensus        16 ~~~~vlIlG-aGGaarai~~aL~-~~g~~~I~I~nR~~~ka   54 (167)
T d1npya1          16 KNAKVIVHG-SGGMAKAVVAAFK-NSGFEKLKIYARNVKTG   54 (167)
T ss_dssp             TTSCEEEEC-SSTTHHHHHHHHH-HTTCCCEEEECSCHHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHH-HCCCCEEEEecccHHHH
Confidence            357899999 5999999999998 5786 599999987653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.034  Score=40.20  Aligned_cols=39  Identities=33%  Similarity=0.223  Sum_probs=34.4

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ..+|+|+|+| .|.||+.+++.|. ..|.+|++.+.+|...
T Consensus        22 l~Gk~v~V~G-yG~iG~g~A~~~r-g~G~~V~v~e~dp~~a   60 (163)
T d1li4a1          22 IAGKVAVVAG-YGDVGKGCAQALR-GFGARVIITEIDPINA   60 (163)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHHHH
T ss_pred             ecCCEEEEec-cccccHHHHHHHH-hCCCeeEeeecccchh
Confidence            4579999999 9999999999998 7899999999987553

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.77  E-value=0.027  Score=41.86  Aligned_cols=36  Identities=11%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~   65 (303)
                      ++||+|+| +|..|...+..|. +.|++ |+++.|.+.-
T Consensus         4 ~~kVaIIG-aGpaGl~aA~~l~-~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLG-AGPASISCASFLA-RLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHH-HTTCCCEEEEESSSSC
T ss_pred             CCEEEEEC-ChHHHHHHHHHHH-HCCCCeEEEEEecCcc
Confidence            58999999 6999999999998 68885 9999987643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.74  E-value=0.038  Score=39.44  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      ...+|+|||+|| |.+|..-++.|+ +.|.+|++++..
T Consensus        10 ~l~gkrvLViGg-G~va~~ka~~Ll-~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGG-GEVGLTRLYKLM-PTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHG-GGTCEEEEEEEE
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEeCC
Confidence            456899999995 999999999999 678899999753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.61  E-value=0.05  Score=41.83  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ...++|+|+| +|..|...+..|. +.|++|+++.+.+.
T Consensus        47 ~~~k~VvIIG-aGpAGl~aA~~l~-~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVG-AGPSGSEAARVLM-ESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSSSS
T ss_pred             cCCceEEEEc-ccHHHHHHHHHHH-HhccceeeEeeccc
Confidence            3568999999 6999999999998 68999999988754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.49  E-value=0.056  Score=39.25  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCC--CeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTAN--WKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~   64 (303)
                      +|||+|.| +|++|..++..|. +.+  .+|+++.+++.
T Consensus         2 gkrivIvG-gG~~G~e~A~~l~-~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVG-GGTGGATAAKYIK-LADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HHCTTSEEEEECSCSC
T ss_pred             CCcEEEEC-ccHHHHHHHHHHH-HcCCCCcEEEEECCCc
Confidence            68999999 6999999999998 334  57888887653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.11  Score=37.68  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc-ccCCCeE-EEEecCCCHHHHHHHHh-----ccCceeE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA-IQSSSYC-FISCDLLNPLDIKRKLT-----LLEDVTH   98 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~-~~~~~~~-~~~~D~~~~~~l~~~~~-----~~~~V~~   98 (303)
                      .+.+|+|+|+ |.+|...++.+. ..|. +|+++++++.+.. ...-+.. ++..+-.+.....+.+.     +.|.|+.
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~-~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAK-AMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCEEEEECC-CccHHHHHHHHH-HcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            3568999985 999999998887 5777 6999999876643 1223443 33344455555444443     2444555


Q ss_pred             Ee
Q 042242           99 IF  100 (303)
Q Consensus        99 ~~  100 (303)
                      +.
T Consensus       104 ~~  105 (171)
T d1pl8a2         104 CT  105 (171)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.20  E-value=0.041  Score=39.87  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+.+|+|.|+ |.+|...++.+. ..|.+|+++++++.+.
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak-~~G~~Vi~~~~~~~~~   64 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYAR-AMGLHVAAIDIDDAKL   64 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESCHHHH
T ss_pred             CCCEEEEeec-cccHHHHHHHHH-HcCCccceecchhhHH
Confidence            4679999985 999999888776 6789999999987654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.19  E-value=0.056  Score=39.43  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      +.||.|.| +|++|+.+++.|.+..+++++++..+.
T Consensus         3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~   37 (170)
T d1f06a1           3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (170)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            35899999 799999999999866789976665543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.14  E-value=0.045  Score=42.96  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |+|+| +|.+|..++.+|. +.|++|+++.+..
T Consensus         7 vvIIG-aGi~Gls~A~~La-~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIG-GGIIGSAIAYYLA-KENKNTALFESGT   37 (276)
T ss_dssp             EEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHH-HCCCcEEEEeCCC
Confidence            99999 6999999999998 6899999999865

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.00  E-value=0.044  Score=40.99  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=28.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |||.|.| .|++|..++..|.  .||+|++++-++..
T Consensus         1 MkI~ViG-lG~vGl~~a~~~a--~g~~V~g~Din~~~   34 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLLS--LQNEVTIVDILPSK   34 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHT--TTSEEEEECSCHHH
T ss_pred             CEEEEEC-CChhHHHHHHHHH--CCCcEEEEECCHHH
Confidence            5799998 8999999987553  59999999987654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.64  E-value=0.063  Score=37.06  Aligned_cols=59  Identities=14%  Similarity=0.025  Sum_probs=38.7

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc-cccCCCeEEEEecCCCHHHHHHHHhc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT-AIQSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      ..+|+|.| +|.+|+.|++.+..+.+|+++++.-+.++. -..-.++.++..     +.+.+..+.
T Consensus         3 ~~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~-----~~l~~~~~~   62 (126)
T d2dt5a2           3 KWGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHV-----DLLPQRVPG   62 (126)
T ss_dssp             CEEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEG-----GGHHHHSTT
T ss_pred             CceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecH-----HHHHHHHhh
Confidence            34899999 699999999988756789976665544332 222346666533     345555543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.63  E-value=0.092  Score=35.55  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=28.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHh--hcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLI--STANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~--~~~g~~V~~~~r~~~   64 (303)
                      +++++|.| +|++|-.++..|.  ...+.+|+++.|.+.
T Consensus        20 p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            47999999 5999999996554  145678999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.48  E-value=0.042  Score=40.20  Aligned_cols=38  Identities=21%  Similarity=0.196  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+++|+|.| +|..|+.++..|. ..+-+|+++.|+.++.
T Consensus        17 ~~k~vlIlG-aGGaarai~~aL~-~~~~~i~I~nR~~~~a   54 (171)
T d1p77a1          17 PNQHVLILG-AGGATKGVLLPLL-QAQQNIVLANRTFSKT   54 (171)
T ss_dssp             TTCEEEEEC-CSHHHHTTHHHHH-HTTCEEEEEESSHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHc-ccCceeeeccchHHHH
Confidence            568999999 5888999999998 5667899999987653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.46  E-value=0.053  Score=39.86  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      ..+|+|+|+| +|..++.++..|. ..| +|+++.|+..+
T Consensus        16 ~~~k~vlIlG-aGG~arai~~aL~-~~~-~i~I~nR~~~k   52 (177)
T d1nvta1          16 VKDKNIVIYG-AGGAARAVAFELA-KDN-NIIIANRTVEK   52 (177)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHT-SSS-EEEEECSSHHH
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHc-ccc-ceeeehhhhhH
Confidence            3678999999 6889999999997 556 89999998655

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.41  E-value=0.084  Score=38.54  Aligned_cols=40  Identities=18%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      .+.+|+|.|+ |.+|...++.+....+.+|+++++++.+..
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~   67 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFA   67 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHH
Confidence            4579999998 568988888887444457999999887654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.25  E-value=0.13  Score=34.65  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHh--hcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLI--STANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~--~~~g~~V~~~~r~~~   64 (303)
                      +++++|.| .|++|-.++..|.  ...|.+|+++.|.+.
T Consensus        18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEEC-CChHHHHHHHHhHhhcccccccceeccccc
Confidence            47999999 6999999997654  245889999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.084  Score=42.44  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      +.+||+|+| +|.-|...+..|. +.|++|+++-++.
T Consensus         4 ~~~kViVIG-aG~aGL~aA~~L~-~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIG-SGVSGLAAARQLQ-SFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEEC-CBHHHHHHHHHHH-HTTCEEEEECSSS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHH-hCCCCEEEEeCCC
Confidence            457899999 6999999999998 6899999997654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.19  E-value=0.092  Score=37.70  Aligned_cols=32  Identities=38%  Similarity=0.559  Sum_probs=27.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      .||+|.| +|++|-.++..|.  .+++|+++.|.+
T Consensus         1 ~rVvIIG-gG~~G~e~A~~l~--~~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVG-NGPGGFELAKQLS--QTYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHT--TTSEEEEECSSS
T ss_pred             CeEEEEC-CcHHHHHHHHHHH--cCCCEEEEeccc
Confidence            3899999 6999999999996  467999998765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.18  E-value=0.071  Score=38.70  Aligned_cols=39  Identities=13%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~   66 (303)
                      .+.+|+|+|++|-+|...++.+. ..| ..|+++++++.+.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~-~~g~~~V~~~~~~~~~~   66 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAK-AVSGATIIGVDVREEAV   66 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HHTCCEEEEEESSHHHH
T ss_pred             CCCEEEEEeccccceeeeeeccc-ccccccccccccchhhH
Confidence            45799999999999999999887 455 4699998887654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.02  E-value=0.13  Score=37.73  Aligned_cols=73  Identities=14%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEec----------------------CCCHH
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCD----------------------LLNPL   84 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D----------------------~~~~~   84 (303)
                      +.+|+|+| .|-.|..-++..+ .-|.+|++++.++.... .+...-.++..+                      ..+.+
T Consensus        29 pa~VvViG-aGvaG~~Aa~~A~-~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          29 PARVLVFG-VGVAGLQAIATAK-RLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CcEEEEEc-CcHHHHHHHHHHH-HcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            46999999 5999999999888 68999999999876643 111222222111                      12235


Q ss_pred             HHHHHHhccCceeEEeec
Q 042242           85 DIKRKLTLLEDVTHIFWV  102 (303)
Q Consensus        85 ~l~~~~~~~~~V~~~~~~  102 (303)
                      .+.+.++.+|.||-.+..
T Consensus       107 ~l~~~l~~aDlVI~tali  124 (183)
T d1l7da1         107 AVLKELVKTDIAITTALI  124 (183)
T ss_dssp             HHHHHHTTCSEEEECCCC
T ss_pred             HHHHHHHhhhhheeeeec
Confidence            677788888866655443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.94  E-value=0.047  Score=43.32  Aligned_cols=37  Identities=24%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      |..+|+|.| .|..|..++..|. +.|++|+++.|++..
T Consensus         1 mk~~V~IvG-aGp~Gl~~A~~L~-~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           1 MKTQVAIIG-AGPSGLLLGQLLH-KAGIDNVILERQTPD   37 (292)
T ss_dssp             CBCSEEEEC-CSHHHHHHHHHHH-HHTCCEEEECSSCHH
T ss_pred             CCCCEEEEC-cCHHHHHHHHHHH-HCCCCEEEEeCCCCC
Confidence            444799999 5999999999998 689999999998743

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.83  E-value=0.64  Score=33.54  Aligned_cols=107  Identities=11%  Similarity=-0.036  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCChhHHH--HHHHHhhc---CCCeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           28 KNVAVIFGVTGLVGKE--LARRLIST---ANWKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~--l~~~L~~~---~g~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      ++||.|.|| |.+|..  ++..|+..   .+.++..+++++.+..           ......++...  +   +.+++++
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~--t---d~~eaL~   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT--M---NLDDVII   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE--S---CHHHHHT
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe--C---Chhhccc
Confidence            359999995 999875  33344411   2458999999876532           01122332221  2   2557889


Q ss_pred             ccCceeEEeecccccCChHHHHHH------------------------HHHHHHHHHHHHHHHhhccCCccEE
Q 042242           92 LLEDVTHIFWVTWASQFASDMHKC------------------------CEQNKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~~~~~~~~~~------------------------~~~n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      ++|.|+..+..........+..-.                        ..-|+.-...+++.+++.++....+
T Consensus        76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i  148 (171)
T d1obba1          76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYL  148 (171)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEE
Confidence            988666654432211111111000                        1237777888888888877655443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.79  E-value=0.069  Score=40.77  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=28.5

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |+|+| +|.-|...+..|. +.|++|.++.+++
T Consensus         8 viViG-aG~~Gl~~A~~La-~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLG-TGITECILSGLLS-VDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHH-HCCCCEEEEcCCC
Confidence            79999 7999999999998 6899999999975

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.77  E-value=0.071  Score=42.01  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=29.4

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      ++|+|+| +|.-|...+.+|. +.|++|+++.+++
T Consensus         1 m~V~IIG-aG~aGL~aA~~L~-~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVG-GGISGLAVAHHLR-SRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEEC-CBHHHHHHHHHHH-TTTCCEEEECSSS
T ss_pred             CeEEEEC-CCHHHHHHHHHHH-hCCCCEEEEecCC
Confidence            4699999 5999999999998 6899999999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.70  E-value=0.11  Score=37.48  Aligned_cols=39  Identities=15%  Similarity=0.199  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      .+.+|+|.|+ |-||...++.+. ..|.+|+++++++.+..
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~-~~g~~v~~~~~~~~r~~   65 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAK-AMGLNVVAVDIGDEKLE   65 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHH-HTTCEEEEECSCHHHHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHh-cCCCeEeccCCCHHHhh
Confidence            4579999985 889999888777 68889999998876643

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.67  Score=31.15  Aligned_cols=64  Identities=8%  Similarity=0.087  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCC----------hhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhc
Q 042242           28 KNVAVIFGVTG----------LVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTL   92 (303)
Q Consensus        28 ~~~vlVtGatG----------~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~   92 (303)
                      .++|||+|+..          +.+.+.++.|. +.||+++.+..+|........-..-+-..=...+.+.++++.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk-~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~~Ii~~   77 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALR-EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRI   77 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHH-HTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHH
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHH-hcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHHHHHHH
Confidence            57999999643          78899999998 799999999988876432211111222333345666666643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.55  E-value=0.35  Score=34.15  Aligned_cols=58  Identities=22%  Similarity=0.126  Sum_probs=41.3

Q ss_pred             CCEEEEE-cCCChhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccCc
Q 042242           28 KNVAVIF-GVTGLVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLED   95 (303)
Q Consensus        28 ~~~vlVt-GatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   95 (303)
                      .+.++|. .+.||||..++..|. ..|.+|+++.+.+.-.+         ..|-.....+.+.+....+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la-~~G~~Vtlv~~~~~~~~---------~~~~~~~~~~~~~l~~~GV   97 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLA-TAGHEVTIVSGVHLANY---------MHFTLEYPNMMRRLHELHV   97 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHH-HTTCEEEEEESSCTTTH---------HHHTTCHHHHHHHHHHTTC
T ss_pred             CCceEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCcccc---------ccchhHHHHHHHHHhhccc
Confidence            4566665 246999999999998 78999999999764322         1355556667777766553

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.51  E-value=0.036  Score=40.80  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR   61 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   61 (303)
                      |..+|+|.| +|++|-.++..|. ..|++|.++.+
T Consensus         2 m~a~VvIIG-gG~~G~e~A~~l~-~~g~~v~i~~~   34 (183)
T d1d7ya1           2 LKAPVVVLG-AGLASVSFVAELR-QAGYQGLITVV   34 (183)
T ss_dssp             CCSSEEEEC-CSHHHHHHHHHHH-HHTCCSCEEEE
T ss_pred             CCCCEEEEC-ccHHHHHHHHHHH-hcCCceEEEEE
Confidence            567899999 6999999999998 56767555544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.36  E-value=0.098  Score=38.14  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      +++|+|.| +|++|-.++..|. ..|.+|+++.+.+
T Consensus         3 ~~~VvIIG-gG~~G~e~A~~l~-~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVG-TGLAGVEVAFGLR-ASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHH-HTTCCSEEEEECS
T ss_pred             CCCEEEEC-CcHHHHHHHHHHH-HcCCceEEEEecC
Confidence            57899999 6999999999998 6788877666554

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.74  E-value=0.1  Score=41.50  Aligned_cols=33  Identities=36%  Similarity=0.723  Sum_probs=28.5

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   63 (303)
                      .+|+|+| +|.+|..++.+|. +.|+ +|++++|.+
T Consensus         2 ~dViIIG-aGi~G~s~A~~La-~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIG-AGIVGTNLADELV-TRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHH-HTTCCCEEEECSSC
T ss_pred             CCEEEEC-cCHHHHHHHHHHH-HcCCCcEEEEeCCC
Confidence            3699999 6999999999998 5786 699999875

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.62  E-value=1.5  Score=29.73  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCC---ChhHHHHHHHHhhcCC-CeEEEEecCCcc
Q 042242           26 DAKNVAVIFGVT---GLVGKELARRLISTAN-WKVYGIARKPEI   65 (303)
Q Consensus        26 ~~~~~vlVtGat---G~iG~~l~~~L~~~~g-~~V~~~~r~~~~   65 (303)
                      +..++|.|.|||   |..|..+.+.|+ ..+ ++|+.+..+...
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~-~~~~g~v~pVnP~~~~   48 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLK-EYKKGKVYPVNIKEEE   48 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHT-TCCSSEEEEECSSCSE
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHH-HcCCCcEEEeccCccc
Confidence            456899999998   999999999998 444 789999876544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.56  E-value=0.19  Score=37.17  Aligned_cols=35  Identities=11%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             CEEEEEcCCChhHHHHHHHHhh-cCCCeEEEEecCCc
Q 042242           29 NVAVIFGVTGLVGKELARRLIS-TANWKVYGIARKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~-~~g~~V~~~~r~~~   64 (303)
                      |||+|.| +|++|..++..|.+ ..+.+|+++.|.+.
T Consensus         1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~~   36 (198)
T d1nhpa1           1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (198)
T ss_dssp             CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence            5899999 69999999999972 24668999888653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.33  E-value=0.25  Score=32.05  Aligned_cols=51  Identities=12%  Similarity=0.210  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCChhH-HHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEec
Q 042242           27 AKNVAVIFGVTGLVG-KELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCD   79 (303)
Q Consensus        27 ~~~~vlVtGatG~iG-~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D   79 (303)
                      +.++|.++|. |.+| +.|++.|. +.||+|.+.|+......  +...++.+..++
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~-~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~   60 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILL-NEGYQISGSDIADGVVTQRLAQAGAKIYIGH   60 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHH-HHTCEEEEEESCCSHHHHHHHHTTCEEEESC
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHH-hCCCEEEEEeCCCChhhhHHHHCCCeEEECC
Confidence            4579999985 4455 77788887 78999999999765422  334577765544

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.14  Score=35.65  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCChhHHHHHHHHh---hcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLI---STANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~---~~~g~~V~~~~r~~~   64 (303)
                      .++++|.| +|++|-.++..|.   ...|.+|+.+.+.+.
T Consensus        37 ~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            47999999 5999999999885   235789999988654

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=90.05  E-value=0.81  Score=33.99  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--------------ccCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--------------IQSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------------~~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      ++||+++| ++..+..+++.|+ +.+++|.++.-.+++..              ....++.....+..+.+.+.+.++..
T Consensus         3 ~mKI~f~G-~~~~~~~~L~~L~-~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (206)
T d1fmta2           3 SLRIIFAG-TPDFAARHLDALL-SSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL   80 (206)
T ss_dssp             CCEEEEEE-CSHHHHHHHHHHH-HTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred             CcEEEEEC-CCHHHHHHHHHHH-hCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence            46899998 7889999999999 57899766654332211              01124555556555556666777765


Q ss_pred             C-ceeEEe
Q 042242           94 E-DVTHIF  100 (303)
Q Consensus        94 ~-~V~~~~  100 (303)
                      + +++.++
T Consensus        81 ~~d~~v~~   88 (206)
T d1fmta2          81 QADVMVVV   88 (206)
T ss_dssp             TCSEEEEE
T ss_pred             cceEEEee
Confidence            5 344443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.95  E-value=0.22  Score=37.18  Aligned_cols=39  Identities=21%  Similarity=0.125  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +..+++|.|-| -|.+|+++++.|. +.|.+|++.+.++..
T Consensus        24 ~L~gk~v~IqG-~G~VG~~~A~~L~-~~Gakvvv~d~d~~~   62 (201)
T d1c1da1          24 SLDGLTVLVQG-LGAVGGSLASLAA-EAGAQLLVADTDTER   62 (201)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEecchHHH
Confidence            46789999999 8999999999998 689999988776543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=89.91  E-value=0.14  Score=40.19  Aligned_cols=32  Identities=16%  Similarity=0.224  Sum_probs=28.7

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      |+|+| +|..|..++.+|. +.|++|+++.+...
T Consensus         6 vvIIG-aGi~Gls~A~~La-~~G~~V~viE~~~~   37 (281)
T d2gf3a1           6 VIVVG-AGSMGMAAGYQLA-KQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSCS
T ss_pred             EEEEC-cCHHHHHHHHHHH-HCCCcEEEEeCCCC
Confidence            89999 6999999999998 68999999998643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.13  Score=41.04  Aligned_cols=34  Identities=32%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      ..|+|+| +|+-|..+|..|. +.|++|.++.+++.
T Consensus         2 ~dv~IIG-aG~sGl~~A~~L~-~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           2 YDYIIVG-SGLFGAVCANELK-KLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHG-GGTCCEEEECSSSS
T ss_pred             ccEEEEC-CcHHHHHHHHHHH-hCCCcEEEEECCCC
Confidence            4699999 6999999999998 67999999998753

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.61  E-value=0.085  Score=39.02  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=28.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~   65 (303)
                      ..+|||+||+|-+|+..++... ..|.+ |+++++++++
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak-~~Ga~~vi~~~~~~e~   68 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGH-LLGCSRVVGICGTQEK   68 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHH-HTTCSEEEEEESSHHH
T ss_pred             CCEEEEECCCchhhHHHHHHHH-HcCCcceecccchHHH
Confidence            3689999999999999999887 57766 5555555433

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.46  Score=32.37  Aligned_cols=67  Identities=9%  Similarity=0.122  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCC----------hhHHHHHHHHhhcCCCeEEEEecCCccccccCCCeEEEEecCCCHHHHHHHHhccC
Q 042242           27 AKNVAVIFGVTG----------LVGKELARRLISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPLDIKRKLTLLE   94 (303)
Q Consensus        27 ~~~~vlVtGatG----------~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   94 (303)
                      ..|+|||+|+..          +.+.+.+++|. +.||+++.+..+|........-..-+-..=...+.+.++++.-.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alk-e~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~~Ii~~E~   82 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALR-EEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKER   82 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHH-HHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHH-HcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHHHHHHHhC
Confidence            358999999743          67889999998 68999999998887643211111122233445567777776433

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.38  E-value=0.52  Score=33.36  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             cCCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCc
Q 042242           22 GREVDAKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPE   64 (303)
Q Consensus        22 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~   64 (303)
                      .+.+...++|+|+| .|..|.-.+..++ +.|.+ |+.+.|++.
T Consensus        39 ~~~p~~~~kVvVIG-GGdtA~D~A~~a~-r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          39 SPLPSIRGAVIVLG-AGDTAFDCATSAL-RCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCCCCCSEEEEEC-SSHHHHHHHHHHH-HTTCSEEEEECSSCG
T ss_pred             CccccCCCEEEEEC-CChhHHHHHHHHH-HcCCcceeEEEeCCh
Confidence            33344567999999 6999999999988 45655 888888764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.34  E-value=0.19  Score=37.01  Aligned_cols=37  Identities=22%  Similarity=0.091  Sum_probs=30.0

Q ss_pred             CCEEEE-EcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           28 KNVAVI-FGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        28 ~~~vlV-tGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +.+|+| .||+|.+|...++... ..|.+|++++|++.+
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk-~~Ga~vI~~v~~~~~   66 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPN   66 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTT
T ss_pred             CCEEEEEeCCCchHHHHHHHHHh-hcCCeEEEEEecccc
Confidence            345666 5899999999988877 679999999987654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.25  E-value=0.26  Score=39.81  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhc-CCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLIST-ANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~   64 (303)
                      .|+|+|+| +|.-|...+..|++. .+++|+++.|+..
T Consensus         4 ~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           4 IRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            47999999 699999999999832 2368999999864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.74  E-value=0.19  Score=35.99  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-ccCCCeEEEEecCCCHHHHHHHHhccCceeEE
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-IQSSSYCFISCDLLNPLDIKRKLTLLEDVTHI   99 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~~V~~~   99 (303)
                      .+|+++|+| -|.+|+-++++|. ..|-+|+++..+|.... ....++++.        .++++++..| ||..
T Consensus        22 aGk~vvV~G-YG~vGrG~A~~~r-g~Ga~V~V~E~DPi~alqA~mdGf~v~--------~~~~a~~~aD-i~vT   84 (163)
T d1v8ba1          22 SGKIVVICG-YGDVGKGCASSMK-GLGARVYITEIDPICAIQAVMEGFNVV--------TLDEIVDKGD-FFIT   84 (163)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHH-HHTCEEEEECSCHHHHHHHHTTTCEEC--------CHHHHTTTCS-EEEE
T ss_pred             cCCEEEEec-ccccchhHHHHHH-hCCCEEEEEecCchhhHHHHhcCCccC--------chhHccccCc-EEEE
Confidence            578999999 8999999999998 67889999999886542 122444442        3456777776 4444

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.74  Score=34.19  Aligned_cols=69  Identities=17%  Similarity=0.222  Sum_probs=40.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc-----------ccCCCeEEEEe-cCCCHHHHHHHHhccC-c
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA-----------IQSSSYCFISC-DLLNPLDIKRKLTLLE-D   95 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~~-D~~~~~~l~~~~~~~~-~   95 (303)
                      |||+|+| ++..|..+++.|+ +.|++|.++.-.+++..           ....++.++.. ++.+.+ +.+.++..+ +
T Consensus         1 Mkiv~~~-~~~~g~~~l~~L~-~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~-~~~~i~~~~~D   77 (203)
T d2blna2           1 MKTVVFA-YHDMGCLGIEALL-AAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPL-WVERIAQLSPD   77 (203)
T ss_dssp             CEEEEEE-CHHHHHHHHHHHH-HTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHH-HHHHHHHTCCS
T ss_pred             CeEEEEe-cCHHHHHHHHHHH-HCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchh-hhhhhhhhccc
Confidence            4788997 5668999999999 67999876653322210           11225555543 455544 444555444 4


Q ss_pred             eeEEe
Q 042242           96 VTHIF  100 (303)
Q Consensus        96 V~~~~  100 (303)
                      ++.++
T Consensus        78 lii~~   82 (203)
T d2blna2          78 VIFSF   82 (203)
T ss_dssp             EEEEE
T ss_pred             ceeee
Confidence            44443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.35  E-value=0.35  Score=35.11  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCC-CeEEEEecCCcccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTAN-WKVYGIARKPEITA   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~   67 (303)
                      .+.+|+|+|+ |.+|...++.+. ..| .+|+++++++.+..
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak-~~G~~~Vi~vd~~~~kl~   68 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCK-SAGASRIIGIDLNKDKFE   68 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECC-CchhHHHHHHHH-HcCCceEEEecCcHHHHH
Confidence            4578999995 999999999998 566 57999999887743

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.34  E-value=0.25  Score=32.63  Aligned_cols=41  Identities=12%  Similarity=0.020  Sum_probs=31.1

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcc
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEI   65 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   65 (303)
                      +....+|+|+|.| +|.-|.-++..|. ...-+|+.+.|++..
T Consensus        27 ~~~f~gK~VlVVG-~g~Sa~dia~~l~-~~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          27 PELFVGESVLVVG-GASSANDLVRHLT-PVAKHPIYQSLLGGG   67 (107)
T ss_dssp             GGGGTTCCEEEEC-SSHHHHHHHHHHT-TTSCSSEEEECTTCC
T ss_pred             hhhcCCCeEEEEC-CCCCHHHHHHHHH-HhcCEEEEEEecCcc
Confidence            4456789999999 7999999999998 445456666665543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.32  E-value=0.18  Score=36.71  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   66 (303)
                      .+.+|+|.|+ |.||...++.+. ..|. +|+++++++.+.
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak-~~Ga~~Vi~~d~~~~r~   65 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAK-LRGAGRIIGVGSRPICV   65 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHH-TTTCSCEEEECCCHHHH
T ss_pred             CCCEEEEEcC-Ccchhhhhhhhh-cccccccccccchhhhH
Confidence            4568999985 999999999887 6786 599999887653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.07  E-value=0.39  Score=32.26  Aligned_cols=34  Identities=12%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             CEEEEEcCC---ChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           29 NVAVIFGVT---GLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        29 ~~vlVtGat---G~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |+|.|.|+|   +-.|..+++.|+ +.||+|+.+..+.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~-~~g~~V~pVnP~~   38 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLL-SKGFEVLPVNPNY   38 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHH-HTTCEEEEECTTC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHH-HCCCEEEEEcccc
Confidence            689999988   779999999999 6899999886543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.89  E-value=0.2  Score=38.29  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=28.2

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCC
Q 042242           30 VAVIFGVTGLVGKELARRLISTANW-KVYGIARKP   63 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   63 (303)
                      +|+|+| +|.-|...+..|. +.|+ +|+++.+++
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~-~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLS-EAGITDLLILEATD   34 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHH-HTTCCCEEEECSSS
T ss_pred             CEEEEC-CcHHHHHHHHHHH-hCCCCcEEEEECCC
Confidence            699999 6999999999998 6886 699999865

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.67  E-value=0.31  Score=35.38  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=27.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEec
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIAR   61 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   61 (303)
                      |..||.|-| -|-||+.+++.|+.....+|.++.-
T Consensus         1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd   34 (172)
T d2czca2           1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK   34 (172)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred             CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence            667999999 7999999999998556677666553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.63  E-value=0.47  Score=34.29  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCcccc
Q 042242           26 DAKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEITA   67 (303)
Q Consensus        26 ~~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~   67 (303)
                      .++.+|+|.|+ |.+|...++.+. ..|. +|+++++++.+..
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak-~~G~~~Vi~~d~~~~kl~   66 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCK-AAGASRIIGVGTHKDKFP   66 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHH-HHTCSEEEEECSCGGGHH
T ss_pred             CCCCEEEEECC-CchhHHHHHHHH-HcCCceeeccCChHHHHH
Confidence            34679999995 999999999997 4565 6999999877643

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.28  E-value=0.47  Score=33.02  Aligned_cols=35  Identities=14%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             CCEEEEEcCC---ChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           28 KNVAVIFGVT---GLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        28 ~~~vlVtGat---G~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      .|+|.|.|||   +-.|..+++.|. ..||+|+.+..+.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~-~~g~~v~pVnP~~   56 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLL-EHGYDVYPVNPKY   56 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHH-HTTCEEEEECTTC
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHH-HCCCEEEEECCcc
Confidence            5799999998   889999999999 6899999887654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.22  E-value=0.46  Score=37.50  Aligned_cols=39  Identities=18%  Similarity=0.089  Sum_probs=32.6

Q ss_pred             CCCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           23 REVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        23 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      ..+..+++|+|-| -|.+|+++++.|. +.|..|++++-..
T Consensus        31 ~~~L~gktvaIqG-fGnVG~~~A~~L~-e~Gakvv~vsD~~   69 (293)
T d1hwxa1          31 TPGFGDKTFAVQG-FGNVGLHSMRYLH-RFGAKCVAVGESD   69 (293)
T ss_dssp             CSSSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETT
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEccc
Confidence            3456789999999 7999999999998 6899988877543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.12  E-value=0.22  Score=38.44  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCC
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKP   63 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~   63 (303)
                      ..++|+|.| .|.+|++++..|. ..|.. ++++|.+.
T Consensus        29 ~~~~VliiG-~GglGs~va~~La-~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVG-LGGLGCAASQYLA-SAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEEC-CSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             hCCCEEEEC-CCHHHHHHHHHHH-HcCCCeEEEECCcc
Confidence            467999999 6889999999998 56765 88888654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.09  E-value=0.49  Score=36.36  Aligned_cols=36  Identities=25%  Similarity=0.147  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      +..+++|+|-| -|.+|+++++.|. +.|.+|++++-.
T Consensus        28 ~l~g~~v~IqG-fGnVG~~~a~~L~-~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQG-MGNVGRWTAYWLE-KMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEECS
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHH-HcCCeEEEeecc
Confidence            35679999999 7999999999998 789998887754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=86.72  E-value=1.5  Score=31.37  Aligned_cols=105  Identities=12%  Similarity=-0.009  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCChhHHH-HHHHHhh-cCC---CeEEEEecCCcccc-----------ccCCCeEEEEecCCCHHHHHHHHh
Q 042242           28 KNVAVIFGVTGLVGKE-LARRLIS-TAN---WKVYGIARKPEITA-----------IQSSSYCFISCDLLNPLDIKRKLT   91 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~-l~~~L~~-~~g---~~V~~~~r~~~~~~-----------~~~~~~~~~~~D~~~~~~l~~~~~   91 (303)
                      ..||.|.|| |.+|.. ++..|+. ...   -+|.+++.++.+..           ......++...  .   +..++++
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---d~~eal~   76 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--T---DPEEAFT   76 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--S---CHHHHHS
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--C---ChhhccC
Confidence            458999997 555654 3344441 222   37999998876542           00122333222  1   2557899


Q ss_pred             ccCceeEEeecccccCChHHHHHHHHH--------------------HHHHHHHHHHHHhhccCCccEE
Q 042242           92 LLEDVTHIFWVTWASQFASDMHKCCEQ--------------------NKAMMCNALNAILPRAKALKHV  140 (303)
Q Consensus        92 ~~~~V~~~~~~~~~~~~~~~~~~~~~~--------------------n~~~~~~ll~~~~~~~~~~~~~  140 (303)
                      ++|.|+..+.....  ..+...+.+..                    |+.-...+++.+++.++.-..+
T Consensus        77 ~AD~Vvitag~~~~--~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li  143 (167)
T d1u8xx1          77 DVDFVMAHIRVGKY--AMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWML  143 (167)
T ss_dssp             SCSEEEECCCTTHH--HHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCCEEEECCCcCCC--CceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEE
Confidence            99977777554222  22222223333                    3555666777777766655443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.43  E-value=0.45  Score=36.68  Aligned_cols=34  Identities=29%  Similarity=0.226  Sum_probs=29.3

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~   64 (303)
                      .+|+|+| +|..|..++..|. +.|+ +|+++.|++.
T Consensus         2 ~~V~IvG-aG~aGl~~A~~L~-~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAG-AGIGGLSCALALH-QAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCSEEEEEESSSS
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-hCCCCeEEEEeCCCC
Confidence            4799999 6999999999998 6885 7999998764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.24  E-value=0.29  Score=39.86  Aligned_cols=30  Identities=30%  Similarity=0.234  Sum_probs=27.6

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      |+|+| +|+-|..++.+|. +.|++|.++-+-
T Consensus         5 VIVVG-sG~aG~v~A~rLa-eaG~~VlvLEaG   34 (367)
T d1n4wa1           5 AVVIG-TGYGAAVSALRLG-EAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEC-CSHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred             EEEeC-cCHHHHHHHHHHH-HCcCeEEEEecC
Confidence            79999 8999999999998 689999999984

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.11  E-value=0.69  Score=29.31  Aligned_cols=49  Identities=12%  Similarity=0.093  Sum_probs=34.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc--ccCCCeEEEEe
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISC   78 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~   78 (303)
                      +||-++|..|-==+.|++.|+ +.||+|.+.|+.+....  ++..++.+..+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~-~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~g   52 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEF-SNGNDVYGSNIEETERTAYLRKLGIPIFVP   52 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSSCCHHHHHHHHTTCCEESS
T ss_pred             cEEEEEeECHHHHHHHHHHHH-hCCCeEEEEeCCCChhHHHHHHCCCeEEee
Confidence            578899865544446777777 79999999999865432  44556766543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.03  E-value=0.44  Score=34.41  Aligned_cols=37  Identities=14%  Similarity=0.109  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCcc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEI   65 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~   65 (303)
                      .+.+|+|.|+ |.||...++.+. ..|.+ |+++++++.+
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak-~~g~~~v~~~~~~~~k   65 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAK-VCGASIIIAVDIVESR   65 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHH-HHTCSEEEEEESCHHH
T ss_pred             CCCEEEEeCC-CHHHhhhhhccc-ccccceeeeeccHHHH
Confidence            4679999996 999999998887 45665 6666666654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.32  Score=38.95  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=28.0

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      |+|+| +|..|...+..|. +.|++|+++.++.
T Consensus         2 ViVIG-aG~aGL~aA~~L~-~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLH-DSGLNVVVLEARD   32 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHH-HTTCCEEEEESSS
T ss_pred             EEEEC-CCHHHHHHHHHHH-hCCCCEEEEecCC
Confidence            78999 6999999999998 6899999998765

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.62  E-value=0.054  Score=41.44  Aligned_cols=27  Identities=22%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEE
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVY   57 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~   57 (303)
                      +||+|+| +|.+|...+.+|. +.|++|+
T Consensus         1 mkV~VIG-aGi~GlstA~~L~-~~G~~v~   27 (246)
T d1kifa1           1 MRVVVIG-AGVIGLSTALCIH-ERYHSVL   27 (246)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HHHTTTS
T ss_pred             CEEEEEC-chHHHHHHHHHHH-HCCCCce
Confidence            4799999 6999999999998 5776543

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.49  E-value=0.68  Score=33.24  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=18.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHh
Q 042242           28 KNVAVIFGVTGLVGKELARRLI   49 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~   49 (303)
                      ..+|.|.| +|.+|+..++.|.
T Consensus         7 k~kv~iIG-~G~~g~~h~~~l~   27 (172)
T d1lc0a1           7 KFGVVVVG-VGRAGSVRLRDLK   27 (172)
T ss_dssp             SEEEEEEC-CSHHHHHHHHHHT
T ss_pred             CcEEEEEc-CCHHHHHHHHHHH
Confidence            45899999 6999999988887

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.14  E-value=0.59  Score=35.14  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             CEEEEEcCCChhHHHHHHHHhh-cCCCeEEEEecCCc
Q 042242           29 NVAVIFGVTGLVGKELARRLIS-TANWKVYGIARKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~-~~g~~V~~~~r~~~   64 (303)
                      +||.|+| +|--|...+.+|.+ ..|++|+++.+.+.
T Consensus         2 ~kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            5899999 69999999999973 35889999988764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=84.94  E-value=0.74  Score=34.94  Aligned_cols=39  Identities=21%  Similarity=0.153  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        24 ~~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .+..+++|+|-| -|.+|+++++.|. +.|..|++.+.++.
T Consensus        35 ~~l~g~~v~IqG-~GnVG~~~a~~L~-~~Gakvv~~d~~~~   73 (230)
T d1leha1          35 DSLEGLAVSVQG-LGNVAKALCKKLN-TEGAKLVVTDVNKA   73 (230)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCHH
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEeecccHH
Confidence            345789999999 7999999999998 68999988776543

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.93  E-value=0.67  Score=33.67  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=27.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      -||.|-| .|.||+.+++.|.+..+.+|+++...
T Consensus         2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd~   34 (178)
T d1b7go1           2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKT   34 (178)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECC
Confidence            3799999 89999999999996678888777644

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.85  E-value=0.87  Score=34.78  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      +..+++|+|-| -|.+|+++++.|.+..|..|++++-.
T Consensus        29 ~l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          29 TLKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeecccc
Confidence            45789999999 69999999999974568888777643

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=84.49  E-value=0.45  Score=36.83  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=30.6

Q ss_pred             CCCCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecC
Q 042242           25 VDAKNVAVIFGVTGLVGKELARRLISTANWKVYGIARK   62 (303)
Q Consensus        25 ~~~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   62 (303)
                      +.++++|.|-| .|.+|+++++.|. +.|.+|++++-.
T Consensus        33 ~l~g~~v~IQG-fGnVG~~~a~~L~-e~GakvvavsD~   68 (255)
T d1bgva1          33 TLVGKTVALAG-FGNVAWGAAKKLA-ELGAKAVTLSGP   68 (255)
T ss_dssp             CSTTCEEEECC-SSHHHHHHHHHHH-HHTCEEEEEEET
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHH-HcCCeEEEEecC
Confidence            44678999999 7999999999998 678998877644

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.14  E-value=0.48  Score=37.62  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .-.|+|+| +|+.|...+..|+ +.|.+|+++.+.+.
T Consensus         7 ~~dV~IIG-AG~sGl~~a~~L~-~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVG-AGFSGLYALYRLR-ELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSSS
T ss_pred             CCCEEEEC-ccHHHHHHHHHHH-hCCCCEEEEEcCCC
Confidence            34799999 5999999999998 68999999998754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.73  E-value=0.55  Score=33.72  Aligned_cols=39  Identities=23%  Similarity=0.189  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+.+|+|.|+ |.+|...++.+.......|+++++++.+.
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~   70 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKL   70 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHH
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHH
Confidence            3578999985 99999999988733444678888876553

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.46  E-value=0.84  Score=32.91  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   66 (303)
                      .+.+|+|+| .|.||...++.+. ..|. .|++.++++.+.
T Consensus        28 ~G~~VlV~G-~G~iGl~a~~~ak-~~Ga~~Vi~~d~~~~r~   66 (174)
T d1e3ia2          28 PGSTCAVFG-LGCVGLSAIIGCK-IAGASRIIAIDINGEKF   66 (174)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEEC-CChHHHHHHHHHH-HhCCceeeeeccchHHH
Confidence            457999998 5999999999998 5676 588888877664

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=83.13  E-value=0.9  Score=32.19  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             CEEEEEcCCChhHHHHH-HHHhhcCCCeEEEEe-cCCc
Q 042242           29 NVAVIFGVTGLVGKELA-RRLISTANWKVYGIA-RKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~-~~L~~~~g~~V~~~~-r~~~   64 (303)
                      .||.|+| +|.||+.+. +.|......+++++. |++.
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~   41 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAA   41 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchh
Confidence            4899999 899999755 555444667877775 5543

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=1.4  Score=34.57  Aligned_cols=34  Identities=18%  Similarity=0.082  Sum_probs=28.1

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      |.+=--.||..|.+|++.++ ..|++|+.+.+..+
T Consensus        38 R~ItN~SSGk~G~alA~~~~-~~Ga~V~li~g~~s   71 (290)
T d1p9oa_          38 RFLDNFSSGRRGATSAEAFL-AAGYGVLFLYRARS   71 (290)
T ss_dssp             EEEEECCCCHHHHHHHHHHH-HTTCEEEEEEETTS
T ss_pred             eEeCCCCchHHHHHHHHHHH-HcCCEEEEEecCCc
Confidence            45555568999999999999 68999999988754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=0.55  Score=39.33  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCChhHHHHHHHHhhcCCCe-EEEEecCCc
Q 042242           28 KNVAVIFGVTGLVGKELARRLISTANWK-VYGIARKPE   64 (303)
Q Consensus        28 ~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~   64 (303)
                      +.||||.|+ |.+|.++++.|. ..|+. +++++.+.-
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~-~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLA-LSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHH-TTTCCCEEEECCCBC
T ss_pred             cCeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEECCCc
Confidence            568999996 779999999998 67875 999987643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.30  E-value=0.77  Score=33.83  Aligned_cols=39  Identities=18%  Similarity=0.038  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      .+.+|+|+|+ |-+|...++.+......+|+++++++.+.
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl   63 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARL   63 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhh
Confidence            4579999985 99998888877633444699988887654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=82.09  E-value=0.68  Score=37.06  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             EEEEEcCCChhHHHHHHHHh----hcCCCeEEEEecCCcc
Q 042242           30 VAVIFGVTGLVGKELARRLI----STANWKVYGIARKPEI   65 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~----~~~g~~V~~~~r~~~~   65 (303)
                      =|+|.| .|..|..++..|.    ...|++|+++.|++..
T Consensus         9 DV~IvG-aG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVG-AGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            389999 5999999999995    2579999999997654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.90  E-value=0.95  Score=32.36  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCC-eEEEEecCCccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANW-KVYGIARKPEIT   66 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   66 (303)
                      .+.+|+|.|+ |.+|...++.+. ..|. .|+++++++.+.
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak-~~G~~~vi~~~~~~~k~   66 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCK-VAGASRIIGVDINKDKF   66 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHH-HHTCSEEEEECSCGGGH
T ss_pred             CCCEEEEecc-hhHHHHHHHHHH-HHhcCceEEEcccHHHH
Confidence            4579999997 678999988887 4565 577777776653

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.49  E-value=1.9  Score=30.77  Aligned_cols=108  Identities=8%  Similarity=-0.064  Sum_probs=57.9

Q ss_pred             CEEEEEcC-CChhHHHHHHHHhhcC---CCeEEEEecCCccccc-----------cCCCeEEEEecCCCHHHHHHHHhcc
Q 042242           29 NVAVIFGV-TGLVGKELARRLISTA---NWKVYGIARKPEITAI-----------QSSSYCFISCDLLNPLDIKRKLTLL   93 (303)
Q Consensus        29 ~~vlVtGa-tG~iG~~l~~~L~~~~---g~~V~~~~r~~~~~~~-----------~~~~~~~~~~D~~~~~~l~~~~~~~   93 (303)
                      +||.|+|| +.+.+..++.-++...   .-++..++.++.....           ...+..+.....+|   ..+.++++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td---~~~al~ga   78 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLD---RRRALDGA   78 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESC---HHHHHTTC
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCC---chhhcCCC
Confidence            58999996 2344455555444222   2379999987654210           01122222233344   34678899


Q ss_pred             CceeEEeecccccCChHHHH--------------------HHHHHHHHHHHHHHHHHhhccCCccEEE
Q 042242           94 EDVTHIFWVTWASQFASDMH--------------------KCCEQNKAMMCNALNAILPRAKALKHVS  141 (303)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~~--------------------~~~~~n~~~~~~ll~~~~~~~~~~~~~~  141 (303)
                      |.|+..+.....  ..+...                    .....|+.-...+++.+.+.++.-..+.
T Consensus        79 DvVv~ta~~~~~--~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~  144 (169)
T d1s6ya1          79 DFVTTQFRVGGL--EARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLIN  144 (169)
T ss_dssp             SEEEECCCTTHH--HHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CEEEEccccCCC--CCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEE
Confidence            877766554321  111111                    1224577777888888887776554443

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.23  E-value=0.9  Score=33.71  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=27.1

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCC
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKP   63 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   63 (303)
                      +||+++| ++..|..+++.|+ +.||+|.++...+
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~-~~~~~i~~V~t~p   33 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLR-KEGHEVVGVFTVP   33 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHH-HTTCEEEEEEECC
T ss_pred             CEEEEEc-CCHHHHHHHHHHH-HCCCcEEEEEcCC
Confidence            5799998 7899999999999 6799987766443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.13  E-value=1.2  Score=31.80  Aligned_cols=40  Identities=18%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCcccc
Q 042242           27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA   67 (303)
Q Consensus        27 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   67 (303)
                      .+.+|+|.|+ |-+|...+..+....+.+|+++++++.+..
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~   67 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFE   67 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHH
Confidence            4578999996 557777777776455667999999887643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.03  E-value=0.91  Score=35.27  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             CEEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           29 NVAVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        29 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      .-|+|+| +|.-|...+..|.+..|++|.++.+.+.
T Consensus        34 ~DViVIG-aGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          34 TDVVVVG-AGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            3599999 4999999999997336999999998764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.54  E-value=0.72  Score=32.53  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=27.0

Q ss_pred             EEEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCccc
Q 042242           30 VAVIFGVTGLVGKELARRLISTANWKVYGIARKPEIT   66 (303)
Q Consensus        30 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   66 (303)
                      ||-++| .|.+|..+++.|+ +.|+.| ...|..++.
T Consensus         2 kIg~IG-lG~MG~~ma~~L~-~~g~~~-~~~~~~~~~   35 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLA-RRFPTL-VWNRTFEKA   35 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHH-TTSCEE-EECSSTHHH
T ss_pred             eEEEEe-HHHHHHHHHHHHH-hCCCEE-EEeCCHHHH
Confidence            588999 7999999999999 678765 456665543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.29  E-value=0.73  Score=36.32  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             EEEEcCCChhHHHHHHHHhhcCCCeEEEEecCCc
Q 042242           31 AVIFGVTGLVGKELARRLISTANWKVYGIARKPE   64 (303)
Q Consensus        31 vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   64 (303)
                      |+|+| +|..|...+..|. +.|.+|+++.+.+.
T Consensus        19 VlVIG-~G~aGl~aA~~la-~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          19 VVVVG-SGGAGFSAAISAT-DSGAKVILIEKEPV   50 (308)
T ss_dssp             EEEEC-CSHHHHHHHHHHH-HTTCCEEEECSSSS
T ss_pred             EEEEC-cCHHHHHHHHHHH-HCCCcEEEEecCCC
Confidence            89999 6999999999998 68999999998653