Citrus Sinensis ID: 042259
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | 2.2.26 [Sep-21-2011] | |||||||
| O64495 | 775 | Subtilisin-like protease | yes | no | 0.939 | 0.903 | 0.433 | 1e-164 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.934 | 0.919 | 0.448 | 1e-164 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.911 | 0.928 | 0.398 | 1e-131 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.891 | 0.886 | 0.404 | 1e-129 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.597 | 0.552 | 0.287 | 2e-32 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.519 | 0.331 | 0.252 | 3e-16 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.528 | 0.332 | 0.247 | 3e-16 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.528 | 0.342 | 0.245 | 4e-16 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.528 | 0.333 | 0.245 | 1e-15 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.519 | 0.331 | 0.250 | 2e-15 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 327/755 (43%), Positives = 461/755 (61%), Gaps = 55/755 (7%)
Query: 33 QTYIVHVRKPKQE--GNFSIKLDLDNWYRTFLPDNI--SKSIDAHHRSRMVYGYRNVISG 88
QTYIV + P E F+ K D W+ +FL + + + + SR++Y Y + I G
Sbjct: 26 QTYIVQLH-PNSETAKTFASKFD---WHLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEG 81
Query: 89 FAARLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGL--HQNSGFWKDSNLGKGVI 146
FAA+LT E + + ++ R +++L+ QTT+S FLGL NSG W S G+G I
Sbjct: 82 FAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTI 141
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCE----LEGANCNNKIIGARNFL------- 195
IGVLD G+ P PSF D GMP P KWKG C+ ++CN K+IGAR F+
Sbjct: 142 IGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVAN 201
Query: 196 NKSEPP---------IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYK 246
+ E P D+ GHGTHTAST G+ V+ AN+ G G A GMAP AH+A+YK
Sbjct: 202 SPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYK 261
Query: 247 VCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSC 306
VC + GC S + AAID A+++ VDVLS+SLG +P + D +A F A ++GI V C
Sbjct: 262 VCWFN-GCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTFRAMERGISVIC 320
Query: 307 SAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS--KQ 364
+AGN+GP S++AN APW+ T+GA T+DR A+ +L N + GE+++ K + ++
Sbjct: 321 AAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGRE 380
Query: 365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMN 424
+ ++Y + + FCL +L +++GK+V+C RG R KG+ VK+AGG AMIL N
Sbjct: 381 VEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRGV-NGRSEKGEAVKEAGGVAMILAN 439
Query: 425 DELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVF 484
E+ D H+LPA + Y +KAY+N+T P A I+F GTVIG+ APEVA F
Sbjct: 440 TEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQF 499
Query: 485 SSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNT-------KSTFTMISGTSMSCP 537
S+RGP+ A+P ILKPD+I PGV+I+AAWP +N+ T + FT++SGTSMSCP
Sbjct: 500 SARGPSLANPSILKPDMIAPGVNIIAAWP---QNLGPTGLPYDSRRVNFTVMSGTSMSCP 556
Query: 538 HLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPS 597
H+SGI AL++SA+P+WSPAAIKSA+MTTAD+ + +GK I + + PA +FA+GAGHVNP
Sbjct: 557 HVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKDGN-KPAGVFAIGAGHVNPQ 615
Query: 598 KANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEA-ELNYPSFSV- 655
KA +PGLVY I DY+ YLC +T I I +V C+ + LNYPS +V
Sbjct: 616 KAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVI 675
Query: 656 -KLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIR 714
K G + + R VTNVG NS Y+ ++ PEG+K+IV P ++ F +Q ++ V F+
Sbjct: 676 FKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVL 735
Query: 715 DQNSN----ASSVQGYLSWVSA---THTVRSPIAI 742
+ + AS QG L+WV++ VRSPI++
Sbjct: 736 KKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 332/741 (44%), Positives = 454/741 (61%), Gaps = 45/741 (6%)
Query: 34 TYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARL 93
TYIVH+ K + +F + NWY + L +IS S + ++Y Y N I GF+ RL
Sbjct: 31 TYIVHMAKSQMPSSFDLH---SNWYDSSL-RSISDS------AELLYTYENAIHGFSTRL 80
Query: 94 TAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLHQNSG-FWKDSNLGKGVIIGVLDM 152
T EE ++ T+ G IS E+ E TT +P FLGL +++ + ++ V++GVLD
Sbjct: 81 TQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDT 140
Query: 153 GITPGHPSFSDEGMPPPPAKWKGKCELEGAN-----CNNKIIGARNFLN----------- 196
G+ P S+SDEG P P+ WKG CE G N CN K+IGAR F
Sbjct: 141 GVWPESKSYSDEGFGPIPSSWKGGCE-AGTNFTASLCNRKLIGARFFARGYESTMGPIDE 199
Query: 197 --KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGC 254
+S P D+DGHGTHT+STAAG+ V GA+L G A+GTA GMAP A +A+YKVC GC
Sbjct: 200 SKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLG-GC 258
Query: 255 PESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPN 314
S + AAID A+ + V+VLS+SLG ++ D +A AF A ++GILVSCSAGN+GP+
Sbjct: 259 FSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPS 318
Query: 315 SSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKN 374
SS+L+N APW+ TVGA T+DR AL LGN + + G ++F+ + P K LP +Y G N
Sbjct: 319 SSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAG--N 376
Query: 375 SSAA----FCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDY 430
+S A C+ TL VKGK+V+C R G R++KG VK AGG MIL N
Sbjct: 377 ASNATNGNLCMTGTLIPEKVKGKIVMCDR-GINARVQKGDVVKAAGGVGMILANTAANGE 435
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPN 490
VAD H+LPA V AG+ I+ Y+ + +PTASI GTV+G K +P VA FSSRGPN
Sbjct: 436 ELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPN 495
Query: 491 TASPGILKPDIIGPGVSILAAWPFSEENI----TNTKSTFTMISGTSMSCPHLSGIAALL 546
+ +P ILKPD+I PGV+ILAAW + + + F +ISGTSMSCPH+SG+AALL
Sbjct: 496 SITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALL 555
Query: 547 KSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHL-LPADLFAVGAGHVNPSKANDPGLV 605
KS HP+WSPAAI+SA+MTTA +GKP+++ P+ F GAGHV+P+ A +PGL+
Sbjct: 556 KSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLI 615
Query: 606 YEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKL-GSSPQTY 664
Y+++ +DY+ +LC NYT QI + + C S + A+LNYPSF+V + G Y
Sbjct: 616 YDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKY 675
Query: 665 NRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNS-NASSV 723
RTVT+VG ++ GVKI V+P ++F E N+K +++VTF D + + S+
Sbjct: 676 TRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNS 735
Query: 724 QGYLSWVSATHTVRSPIAIGF 744
G + W H V SP+AI +
Sbjct: 736 FGSIEWSDGKHVVGSPVAISW 756
|
Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 296/743 (39%), Positives = 413/743 (55%), Gaps = 64/743 (8%)
Query: 25 IENDANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRN 84
+++D +G YIV++ + K E S L +R L + + +++ Y+
Sbjct: 24 LDSDDDGKNIYIVYMGR-KLEDPDSAHLH----HRAMLEQVVGSTFAPES---VLHTYKR 75
Query: 85 VISGFAARLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKG 144
+GFA +LT EE + + + G +S + + E TT S +FLG + S +
Sbjct: 76 SFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVP--RRSQVESN 133
Query: 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGA-NCNNKIIGARNFLNKSEP--- 200
+++GVLD GI P PSF DEG PPP KWKG CE CN KIIGAR++ + P
Sbjct: 134 IVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSY-HIGRPISP 192
Query: 201 -----PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
P D +GHGTHTASTAAG V+ ANL+G GTA G PLA +A YKVC D GC
Sbjct: 193 GDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCS 251
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPS-LPFFADAMATAAFTASQKGILVSCSAGNSGPN 314
++ + AA D A+ +GVD++S+S+G + +F DA+A +F A ++GIL S SAGN GPN
Sbjct: 252 DTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPN 311
Query: 315 SSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVY----- 369
T A+ +PW+L+V AST+DR V Q+GN +++ G +I F ++ PLV
Sbjct: 312 FFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIP 368
Query: 370 -PGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF 428
G S++ FC +++ +KGK+V+C+ G K D GAA +LM
Sbjct: 369 NTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLD-----GAAGVLMTSNTR 423
Query: 429 DYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRG 488
DY AD++ LP+ + YI S SP A+I FK T I SAP V FSSRG
Sbjct: 424 DY---ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILNASAPVVVSFSSRG 479
Query: 489 PNTASPGILKPDIIGPGVSILAAWP-FSEENITNTKSTFTMISGTSMSCPHLSGIAALLK 547
PN A+ ++KPDI GPGV ILAAWP + + F +ISGTSMSCPH++GIA +K
Sbjct: 480 PNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVK 539
Query: 548 SAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYE 607
+ +P WSPAAIKSA+MTTA MN P FA G+GHVNP KA PGLVY+
Sbjct: 540 TYNPTWSPAAIKSALMTTAS--------PMNARFNPQAEFAYGSGHVNPLKAVRPGLVYD 591
Query: 608 ISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLGSSP---QTY 664
+ DYV++LCG+ Y Q + I C+ ++ +LNYPSF + + S Q +
Sbjct: 592 ANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYF 651
Query: 665 NRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQ 724
NRT+T+V S Y I P+G+ I V P+ +SF + +F++T +R S++
Sbjct: 652 NRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT-VR------GSIK 704
Query: 725 GY-----LSWVSATHTVRSPIAI 742
G+ L W H VRSPI I
Sbjct: 705 GFVVSASLVWSDGVHYVRSPITI 727
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 296/731 (40%), Positives = 409/731 (55%), Gaps = 67/731 (9%)
Query: 56 NWYRTFL---PDNISKSIDAH-------------HRSRMVYGYRNVISGFAARLTAEEVK 99
++Y +L PDN ++I H + R VY Y + FAA+L+ E K
Sbjct: 36 DFYIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAK 95
Query: 100 AMETKSGFISARVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHP 159
M +S + TT S +F+GL + + + VIIGVLD GITP
Sbjct: 96 KMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAK--RHLKAERDVIIGVLDTGITPDSE 153
Query: 160 SFSDEGMPPPPAKWKGKC--ELEGANCNNKIIGARNFLN-------KSEPPIDNDGHGTH 210
SF D G+ PPPAKWKG C CNNKIIGA+ F + + PID DGHGTH
Sbjct: 154 SFLDHGLGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPIDIDGHGTH 213
Query: 211 TASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEG 270
T+ST AG V A+L+G ANGTA G P A LA+YKVC GC + + A +AA+ +G
Sbjct: 214 TSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDG 273
Query: 271 VDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGA 330
V+++SIS+G P + +D+++ +F A +KGIL SAGN GP+S T+ N PW+LTV A
Sbjct: 274 VEIISISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAA 333
Query: 331 STIDRSIVALTQLGNQETYDGE--TIFQPKDFPSKQLPLV--YPGVKNSS----AAFCLP 382
S IDR+ + LGN +++ G ++F PK +K PLV KN+ A +C
Sbjct: 334 SGIDRTFKSKIDLGNGKSFSGMGISMFSPK---AKSYPLVSGVDAAKNTDDKYLARYCFS 390
Query: 383 ETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442
++L VKGKV++C+ GGG +K GGA I+++D+ D + + PA
Sbjct: 391 DSLDRKKVKGKVMVCRMGGGGVE----STIKSYGGAGAIIVSDQYLDNAQI---FMAPAT 443
Query: 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDII 502
V+ + G+ I YINST S AS V + T AP VA FSSRGPN S +LKPDI
Sbjct: 444 SVNSSVGDIIYRYINSTRS--ASAVIQKTRQVTIPAPFVASFSSRGPNPGSIRLLKPDIA 501
Query: 503 GPGVSILAAWPFSEENITNTK-----STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAA 557
PG+ ILAA+ + ++T S FT++SGTSM+CPH++G+AA +KS HPDW+PAA
Sbjct: 502 APGIDILAAFTL-KRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAA 560
Query: 558 IKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYL 617
IKSAI+T+A KPI A+ FA G G +NP +A PGLVY++ YV++L
Sbjct: 561 IKSAIITSA-------KPISRRVNKDAE-FAYGGGQINPRRAASPGLVYDMDDISYVQFL 612
Query: 618 CGKNYTDQQIEGIV-DHDVQCSK-VSSIAEAELNYPSFSVKLGSSPQT----YNRTVTNV 671
CG+ Y + +V V CS V + LNYP+ + L S+ + + R VTNV
Sbjct: 613 CGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNV 672
Query: 672 GQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVS 731
G +S YT + P+GV+I V+P +SF++ +QK +F V Q + V G L W S
Sbjct: 673 GPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKS 732
Query: 732 ATHTVRSPIAI 742
H+VRSPI I
Sbjct: 733 PRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 153/532 (28%), Positives = 245/532 (46%), Gaps = 87/532 (16%)
Query: 67 SKSIDAHHRSRMVYGYRNVISGFAARLTAEE---------VKA-----------METKSG 106
+K+I A ++ Y V SGF+ +L A E VKA M+ K
Sbjct: 91 NKAIKAVKNGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDV 150
Query: 107 FISARVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGM 166
IS E+ + PQ S ++G + W GKG+ + ++D G+ HP
Sbjct: 151 TIS---EDAVSPQMDDSAPYIGAND---AWDLGYTGKGIKVAIIDTGVEYNHPDLKKN-- 202
Query: 167 PPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG----HGTHTASTAAGNFVNG 222
++KG ++ ++ K P D G HGTH A T A
Sbjct: 203 ---FGQYKGYDFVD-----------NDYDPKETPTGDPRGEATDHGTHVAGTVA------ 242
Query: 223 ANLFGQANGTAAGMAPLAHLAIYKVC-ETDLGCPESIVNAAIDAAVEEGVDVLSISLGSP 281
ANGT G+AP A L Y+V G E+++ A ++ AV++G DV+++SLG+
Sbjct: 243 ------ANGTIKGVAPDATLLAYRVLGPGGSGTTENVI-AGVERAVQDGADVMNLSLGN- 294
Query: 282 SLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN--EAPWMLTVGASTIDRSIVA 339
SL A +TA A +G++ S GNSGPN T+ + + ++VGA+ + + A
Sbjct: 295 SLNNPDWATSTALDWAMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPLNEYA 354
Query: 340 LTQLGNQET-----YDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKV 394
+T G+ + Y+ E K +K++ LV G+ + + + D+ GKV
Sbjct: 355 VT-FGSYSSAKVMGYNKED--DVKALNNKEVELVEAGIGEA-------KDFEGKDLTGKV 404
Query: 395 VLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKA 454
+ +RG + K + K AG M++ N+ + +P + +S GE++ +
Sbjct: 405 AVVKRGS-IAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVS 463
Query: 455 YINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPF 514
+ + + T FK TV K +VA FSSRGP ++KPDI PGV+I++ P
Sbjct: 464 ALKAGETKT---TFKLTV-SKALGEQVADFSSRGP-VMDTWMIKPDISAPGVNIVSTIPT 518
Query: 515 SEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTA 566
+ + + GTSM+ PH++G A++K A P WS IK+AIM TA
Sbjct: 519 HDPD---HPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTA 567
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 200/471 (42%), Gaps = 84/471 (17%)
Query: 142 GKGVIIGVLDMGITPGHPSF--SDEGMPPPPAKWKGKCELEGAN----------CNNKII 189
G G ++ V+D G H ++ +D+ A+++ K +LE A N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKVA 176
Query: 190 GARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
++ + +D + HGTH + +GN A + G P A L + +V E
Sbjct: 177 YYHDYSKDGKTAVDQE-HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRV-E 230
Query: 250 TDLGCPESIVN--AAIDAAVEEGVDVLSISLGSPSLPF--FADAMATAAFTASQKGILVS 305
G + N AI AV G V+++S G+ +L + D A A KG+ +
Sbjct: 231 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 306 CSAGNS----GPNSSTLANEAPW-----------MLTVGASTIDRSIVALTQLGNQETYD 350
SAGN G LA+ + LTV + + D+ + + + D
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQD 350
Query: 351 GET-IFQPKDF-PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRK 408
E + F P+K Y F DVKGK+ L +RG + K
Sbjct: 351 KEMPVLSTNRFEPNKAYDYAYANRGMKEDDFK--------DVKGKIALIERGDIDFK-DK 401
Query: 409 GKDVKDAGGAAMILMNDELFDYG---TVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS 465
+ K AG +++ +++ D G + + +PA ++S G +K +P +
Sbjct: 402 VANAKKAGAVGVLIYDNQ--DKGFPIELPNVDQMPAAFISRKDGLLLK------DNPQKT 453
Query: 466 IVFKGT--VIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK 523
I F T V+ S +++ FSS G + G +KPDI PG IL++ + N K
Sbjct: 454 ITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-------VANNK 504
Query: 524 STFTMISGTSMSCPHLSGIAALLK----SAHPDWSPAA----IKSAIMTTA 566
+ +SGTSMS P ++GI LL+ + +PD +P+ K +M++A
Sbjct: 505 --YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 115/464 (24%), Positives = 206/464 (44%), Gaps = 70/464 (15%)
Query: 142 GKGVIIGVLDMGITPGHPSF--SDEGMPPPPAKWKGKCELEGAN----------CNNKII 189
G G ++ V+D G H ++ +D+ A+++ K +LE A N+KI
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKIA 176
Query: 190 GARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
++ + +D + HGTH + +GN A + G P A L + +V E
Sbjct: 177 YYHDYSKDGKTAVDQE-HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRV-E 230
Query: 250 TDLGCPESIVN--AAIDAAVEEGVDVLSISLGSPSLPF--FADAMATAAFTASQKGILVS 305
G + N AI AV G V+++S G+ +L + D A A KG+ +
Sbjct: 231 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 306 CSAGNS----GPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFP 361
SAGN G LA+ + + + D ++ + +++ + T+ + D
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV-KTADQQ 349
Query: 362 SKQLPLVYPGVKNSSAAFCLPETLKSI------DVKGKVVLCQRGGGTQRIRKGKDVKDA 415
K++P++ + A+ + + DVKGK+ L +RG + K + K A
Sbjct: 350 DKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK-DKIANAKKA 408
Query: 416 GGAAMILMNDELFDYG---TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGT- 471
G +++ +++ D G + + +PA ++S G +K +P +I F T
Sbjct: 409 GAVGVLIYDNQ--DKGFPIELPNVDQMPAAFISRKDGLLLK------ENPQKTITFNATP 460
Query: 472 -VIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530
V+ S +++ FSS G + G +KPDI PG IL++ + N K + +S
Sbjct: 461 KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-------VANNK--YAKLS 509
Query: 531 GTSMSCPHLSGIAALLK----SAHPDWSPAA----IKSAIMTTA 566
GTSMS P ++GI LL+ + +PD +P+ K +M++A
Sbjct: 510 GTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 205/464 (44%), Gaps = 70/464 (15%)
Query: 142 GKGVIIGVLDMGITPGHPSF--SDEGMPPPPAKWKGKCELEGAN----------CNNKII 189
G G ++ V+D G H ++ +D+ A+++ K +LE A N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKVA 176
Query: 190 GARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
++ + +D + HGTH + +GN A + G P A L + +V E
Sbjct: 177 YYHDYSKDGKTAVDQE-HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRV-E 230
Query: 250 TDLGCPESIVN--AAIDAAVEEGVDVLSISLGSPSLPF--FADAMATAAFTASQKGILVS 305
G + N AI AV G V+++S G+ +L + D A A KG+ +
Sbjct: 231 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 306 CSAGNS----GPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFP 361
SAGN G LA+ + + + D ++ + +++ + T+ + D
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV-KTADQQ 349
Query: 362 SKQLPLVYPGVKNSSAAFCLPETLKSI------DVKGKVVLCQRGGGTQRIRKGKDVKDA 415
K++P++ + A+ + + DVKGK+ L +RG + K + K A
Sbjct: 350 DKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK-DKIANAKKA 408
Query: 416 GGAAMILMNDELFDYG---TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGT- 471
G +++ +++ D G + + +PA ++S G +K +P +I F T
Sbjct: 409 GAVGVLIYDNQ--DKGFPIELPNVDQMPAAFISRKDGLLLK------ENPQKTITFNATP 460
Query: 472 -VIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530
V+ S +++ FSS G + G +KPDI PG IL++ + N K + +S
Sbjct: 461 KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-------VANNK--YAKLS 509
Query: 531 GTSMSCPHLSGIAALLKS----AHPDWSPAA----IKSAIMTTA 566
GTSMS P ++GI LL+ +PD +P+ K +M++A
Sbjct: 510 GTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 206/464 (44%), Gaps = 70/464 (15%)
Query: 142 GKGVIIGVLDMGITPGHPSF--SDEGMPPPPAKWKGKCELEGAN----------CNNKII 189
G G ++ V+D G H ++ +D+ A+++ K +LE A N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKVA 176
Query: 190 GARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
++ + +D + HGTH + +GN A + G P A L + +V E
Sbjct: 177 YYHDYSKDGKTAVDQE-HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRV-E 230
Query: 250 TDLGCPESIVN--AAIDAAVEEGVDVLSISLGSPSLPF--FADAMATAAFTASQKGILVS 305
G + N AI AV G V+++S G+ +L + D A A KG+ +
Sbjct: 231 IVNGLADYARNYAQAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 306 CSAGNS----GPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFP 361
SAGN G LA+ + + + D ++ + +++ + T+ + D
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV-KTADQQ 349
Query: 362 SKQLPLVYPGVKNSSAAFCLPETLKSI------DVKGKVVLCQRGGGTQRIRKGKDVKDA 415
K++P++ + A+ + + DVKGK+ L +RG + K + K A
Sbjct: 350 DKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK-DKIANAKKA 408
Query: 416 GGAAMILMNDELFDYG---TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGT- 471
G +++ +++ D G + + +PA ++S G +K +P +I F T
Sbjct: 409 GAVGVLIYDNQ--DKGFPIELPNVDQMPAAFISRKDGLLLK------ENPQKTITFNATP 460
Query: 472 -VIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530
V+ S +++ FSS G + G +KPDI PG IL++ + N K + +S
Sbjct: 461 KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-------VANNK--YAKLS 509
Query: 531 GTSMSCPHLSGIAALLK----SAHPDWSPAA----IKSAIMTTA 566
GTSMS P ++GI LL+ + +PD +P+ K +M++A
Sbjct: 510 GTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 199/471 (42%), Gaps = 84/471 (17%)
Query: 142 GKGVIIGVLDMGITPGHPSF--SDEGMPPPPAKWKGKCELEGAN----------CNNKII 189
G G ++ V+D G H ++ +D+ A+++ K +LE A N+K+
Sbjct: 123 GAGTVVAVIDAGFDKNHEAWRLTDKSK----ARYQSKEDLEKAKKDHGITYGEWVNDKVA 178
Query: 190 GARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
++ + +D + HGTH + +GN A + G P A L + +V E
Sbjct: 179 YYHDYSKDGKTAVDQE-HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRV-E 232
Query: 250 TDLGCPESIVN--AAIDAAVEEGVDVLSISLGSPSLPF--FADAMATAAFTASQKGILVS 305
G + N AI AV G V+++S G+ +L + D A A KG+ +
Sbjct: 233 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 292
Query: 306 CSAGNS----GPNSSTLANEAPW-----------MLTVGASTIDRSIVALTQLGNQETYD 350
SAGN G LA+ + LTV + + D+ + + + D
Sbjct: 293 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQD 352
Query: 351 GET-IFQPKDF-PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRK 408
E + F P+K Y F DVKGK+ L +RG + K
Sbjct: 353 KEMPVLSTNRFEPNKAYDYAYANRGTKEDDFK--------DVKGKIALIERGDIDFK-DK 403
Query: 409 GKDVKDAGGAAMILMNDELFDYG---TVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS 465
+ K AG +++ +++ D G + + +PA ++S G +K + +
Sbjct: 404 IANAKKAGAVGVLIYDNQ--DKGFPIELPNVDQMPAAFISRKDGLLLK------DNSKKT 455
Query: 466 IVFKGT--VIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK 523
I F T V+ S +++ FSS G + G +KPDI PG IL++ + N K
Sbjct: 456 ITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-------VANNK 506
Query: 524 STFTMISGTSMSCPHLSGIAALLK----SAHPDWSPAA----IKSAIMTTA 566
+ +SGTSMS P ++GI LL+ + +PD +P+ K +M++A
Sbjct: 507 --YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 555
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| 225426708 | 772 | PREDICTED: subtilisin-like protease SDD1 | 0.993 | 0.958 | 0.616 | 0.0 | |
| 225426710 | 755 | PREDICTED: subtilisin-like protease SDD1 | 0.986 | 0.973 | 0.626 | 0.0 | |
| 225426706 | 740 | PREDICTED: subtilisin-like protease SDD1 | 0.979 | 0.986 | 0.605 | 0.0 | |
| 255537203 | 758 | Xylem serine proteinase 1 precursor, put | 0.963 | 0.947 | 0.632 | 0.0 | |
| 224071656 | 773 | predicted protein [Populus trichocarpa] | 0.974 | 0.939 | 0.632 | 0.0 | |
| 255537205 | 767 | Cucumisin precursor, putative [Ricinus c | 0.954 | 0.926 | 0.616 | 0.0 | |
| 449459724 | 745 | PREDICTED: subtilisin-like protease SDD1 | 0.942 | 0.942 | 0.625 | 0.0 | |
| 224058637 | 698 | predicted protein [Populus trichocarpa] | 0.928 | 0.991 | 0.622 | 0.0 | |
| 224071660 | 708 | predicted protein [Populus trichocarpa] | 0.924 | 0.973 | 0.626 | 0.0 | |
| 356514105 | 749 | PREDICTED: subtilisin-like protease SDD1 | 0.983 | 0.978 | 0.590 | 0.0 |
| >gi|225426708|ref|XP_002275452.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/765 (61%), Positives = 577/765 (75%), Gaps = 25/765 (3%)
Query: 1 MAAILISLVYILSFSPTIAVTSNGIEND--------------ANGLQTYIVHVRKPKQEG 46
+A L+SL ++ FS +A + N+ ++ LQTYIVHV++ +
Sbjct: 13 VAVFLLSLSFMCGFSSAVADQETELMNELSEAILEEDVAIEESDHLQTYIVHVKRTHRR- 71
Query: 47 NFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSG 106
F+ L++WY +FLP + S + + R+VY YRNV++GFAA+LTA+EVKAME K G
Sbjct: 72 VFTKSDGLESWYESFLPVATASS---NRKQRIVYSYRNVLNGFAAKLTAQEVKAMEEKDG 128
Query: 107 FISARVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGM 166
F+SAR + IL TTHSP+FLGLHQ GFWK SN GKGVIIGVLD G+ P HPSFSDEG+
Sbjct: 129 FVSARPQRILPLHTTHSPSFLGLHQELGFWKGSNYGKGVIIGVLDTGLFPDHPSFSDEGL 188
Query: 167 PPPPAKWKGKCELEGANCNNKIIGARNFLNKSE--PPIDNDGHGTHTASTAAGNFVNGAN 224
PPPPAKWKGKC+ +CNNKIIGARNF + +E PPID +GHGTHTASTAAGNFV A+
Sbjct: 189 PPPPAKWKGKCDFNWTSCNNKIIGARNFDSGAEAVPPIDEEGHGTHTASTAAGNFVPNAD 248
Query: 225 LFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP 284
G ANGTA GMAP AHLAIYKVC ++ GC ++ + AA+D A+E+GVDVLS+SLG S P
Sbjct: 249 ALGNANGTAVGMAPFAHLAIYKVC-SEFGCADTDILAALDTAIEDGVDVLSLSLGGGSAP 307
Query: 285 FFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLG 344
FFAD++A AF+A QKGI VSCSAGNSGP + +L+NEAPW+LTVGASTIDR I+A LG
Sbjct: 308 FFADSIALGAFSAIQKGIFVSCSAGNSGPLNGSLSNEAPWILTVGASTIDRKIMATATLG 367
Query: 345 NQETYDGETIFQPKDFPSKQLPLVYPGVK-NSSAAFCLPETLKSIDVKGKVVLCQRGGGT 403
N E +DGE++FQP DFPS LPLVY G N+S+A C PE+LK +DV GKVV+C RGGG
Sbjct: 368 NGEEFDGESLFQPSDFPSTLLPLVYAGANGNASSALCAPESLKDVDVAGKVVVCDRGGGI 427
Query: 404 QRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPT 463
RI KG++VKDAGGAAMIL NDEL + T+ D HVLPA +VSYAAG +IK+YI S S+PT
Sbjct: 428 GRIAKGQEVKDAGGAAMILTNDELNGFSTLVDAHVLPATHVSYAAGLKIKSYIKSDSAPT 487
Query: 464 ASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK 523
A+IVFKGT+IG +APEV FSSRGP+ SPGILKPDIIGPGVSILAAWPF EN T +K
Sbjct: 488 ATIVFKGTIIGVPTAPEVTSFSSRGPSLESPGILKPDIIGPGVSILAAWPFPLENDTTSK 547
Query: 524 STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLP 583
TF +ISGTSMSCPHLSGIAAL+KSAHPDWSPAAIKSAI+TTAD+ NLE KPI++ P
Sbjct: 548 PTFNVISGTSMSCPHLSGIAALIKSAHPDWSPAAIKSAIITTADLHNLENKPIIDETFQP 607
Query: 584 ADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSI 643
ADLFA GAGHVNPS ANDPGL+Y++ DDY+ YLCG YTD+++ IV+ ++CS+ SSI
Sbjct: 608 ADLFATGAGHVNPSAANDPGLIYDLEPDDYIPYLCGLGYTDEEVGLIVNRTLKCSEESSI 667
Query: 644 AEAELNYPSFSVKLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKN 703
EA+LNYPSFS+ LG S TY+RTVTNVG NS Y+ I+ P GV++ V PDK+ FTE N
Sbjct: 668 PEAQLNYPSFSIALGPSSGTYSRTVTNVGAANSSYSVQILAPSGVEVSVNPDKLEFTEVN 727
Query: 704 QKATFSVTFIRDQNSNASS---VQGYLSWVSATHTVRSPIAIGFE 745
QK T+ V+F R QG+L WVS +H+VRSPI++ FE
Sbjct: 728 QKITYMVSFSRTSAGGEGGKPFAQGFLKWVSDSHSVRSPISVMFE 772
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426710|ref|XP_002275471.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/756 (62%), Positives = 577/756 (76%), Gaps = 21/756 (2%)
Query: 5 LISLVYILSFSPTIAVTS---NGIEN-DANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRT 60
+++V+IL FSP IA S + IE + + LQTYIVHV++ + + + +L++W+R+
Sbjct: 6 FLTIVFILYFSPEIAQGSQFSSSIETTEKSMLQTYIVHVKQ-LERSTTAQQENLESWHRS 64
Query: 61 FLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILEPQT 120
FLP + S ++ R+VY Y+NVISGFAARLT EEV+AME GFISA E +L T
Sbjct: 65 FLPVATATS---DNQERLVYSYKNVISGFAARLTEEEVRAMENMDGFISASPEKMLPLLT 121
Query: 121 THSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELE 180
THSP+FLGLHQ GFWK+SN GKGVIIGVLD G+ P HPSFS EG+PPPPAKWKG CE
Sbjct: 122 THSPDFLGLHQEMGFWKESNFGKGVIIGVLDSGVLPSHPSFSGEGIPPPPAKWKGSCEFM 181
Query: 181 GANCNNKIIGARNF--------LNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGT 232
+ CNNK+IGAR+F +EPP+D+DGHGTHTASTAAG FV A++ G A GT
Sbjct: 182 ASECNNKLIGARSFNVGAKATKGVTAEPPLDDDGHGTHTASTAAGAFVKNADVLGNAKGT 241
Query: 233 AAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMAT 292
A GMAP AHLAIYKVC CPES V A +DAAVE+GVDV+SISLG P++PFF D +A
Sbjct: 242 AVGMAPYAHLAIYKVCFGP-DCPESDVIAGLDAAVEDGVDVISISLGDPAVPFFQDNIAV 300
Query: 293 AAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGE 352
+F A QKGI VSCSAGNSGP ++TL+NEAPW+LTVGAS+IDR+I A +LGN E +DGE
Sbjct: 301 GSFAAMQKGIFVSCSAGNSGPFNTTLSNEAPWILTVGASSIDRTIKAAAKLGNGEQFDGE 360
Query: 353 TIFQPKDFPSKQLPLVYPGVKNS-SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKD 411
T+FQP DFP+ QLPLVY G+ +A C +LK+IDVKGKVVLC RGGG RI KG +
Sbjct: 361 TLFQPSDFPATQLPLVYAGMNGKPESAVCGEGSLKNIDVKGKVVLCDRGGGIARIDKGTE 420
Query: 412 VKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGT 471
VK+AGGAAMIL+N E + T+AD HVLPA +VSYAAG +IKAYINST++PTA+I+FKGT
Sbjct: 421 VKNAGGAAMILVNQESDGFSTLADAHVLPATHVSYAAGLKIKAYINSTATPTAAILFKGT 480
Query: 472 VIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISG 531
VIG +P + FSSRGP+ ASPGILKPDIIGPGVSILAAWPF +N N+KSTF +ISG
Sbjct: 481 VIGNPLSPAITSFSSRGPSFASPGILKPDIIGPGVSILAAWPFPLDNNINSKSTFNIISG 540
Query: 532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGA 591
TSMSCPHLSGIAALLKS+HPDWSPAAIKSAIMTTAD++N+ GKPI++ LLPAD+FA GA
Sbjct: 541 TSMSCPHLSGIAALLKSSHPDWSPAAIKSAIMTTADLLNVGGKPIVDERLLPADIFATGA 600
Query: 592 GHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYP 651
GHVNPS+ANDPGLVY+I DDY+ YLCG YTD ++ + ++CS+ SSI E ELNYP
Sbjct: 601 GHVNPSRANDPGLVYDIEPDDYIPYLCGLGYTDTEVGILAHRSIKCSEESSIPEGELNYP 660
Query: 652 SFSVKLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVT 711
SFSV LG PQT+ RTVTNVG+ S YT IVP+GV + V PDK+ F++ NQK T+SVT
Sbjct: 661 SFSVALG-PPQTFTRTVTNVGEAYSSYTVTAIVPQGVDVSVNPDKLYFSKVNQKLTYSVT 719
Query: 712 FIRDQNSNASS--VQGYLSWVSATHTVRSPIAIGFE 745
F + +S SS QGYL WVS H+V SPI+I F+
Sbjct: 720 FSHNSSSGKSSKFAQGYLKWVSGKHSVGSPISIMFK 755
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426706|ref|XP_002275429.1| PREDICTED: subtilisin-like protease SDD1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/748 (60%), Positives = 569/748 (76%), Gaps = 18/748 (2%)
Query: 4 ILISLVYILSFSPTIAVTSNGIENDANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLP 63
L++ + + FSP IA D +TY++HV+ P E + +L++WY++F+P
Sbjct: 5 FLLAFICMSGFSPAIA--------DKTQFKTYVIHVKHPNNE-EVAEAQNLESWYKSFMP 55
Query: 64 DNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILEPQTTHS 123
S + D+ + R+V+ Y++V++GFAARLT +EV AM+ K GF+SAR E I TTH+
Sbjct: 56 --TSMTADSDQQPRIVHSYQHVMTGFAARLTEDEVNAMKEKDGFVSARPEKIFHLHTTHT 113
Query: 124 PNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGAN 183
P FLGLH+ SGFWK SNLGKGVIIGVLD G+ P H SFSD GMPPPPAKWKGKCE +G +
Sbjct: 114 PGFLGLHKGSGFWKGSNLGKGVIIGVLDTGVLPDHVSFSDAGMPPPPAKWKGKCEFKGTS 173
Query: 184 CNNKIIGARNFLNKSE--PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAH 241
CNNK+IGARNF ++S PP D +GHGTHTASTAAGNFV A++FG A GTA GMAP AH
Sbjct: 174 CNNKLIGARNFDSESTGTPPSDEEGHGTHTASTAAGNFVKHASVFGNAKGTAVGMAPHAH 233
Query: 242 LAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301
LAIYKVC ++ GC S + AA+DAA+E+GVDVLS+SLG S PF D +A AF A++KG
Sbjct: 234 LAIYKVC-SESGCAGSDILAALDAAIEDGVDVLSLSLGGQSFPFHEDPIALGAFAATRKG 292
Query: 302 ILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFP 361
I VSCSAGN GP +STL+NEAPW+LTV AST+DRSI A+ +LGN + +DGE++FQP+DFP
Sbjct: 293 IFVSCSAGNEGPTNSTLSNEAPWILTVAASTMDRSIKAMVKLGNGKNFDGESLFQPRDFP 352
Query: 362 SKQLPLVYPGV-KNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAM 420
S+QLPLVY G N+S+AFC +LK +DVKGKVV+C RGGG RI KGK+VK+AGGAAM
Sbjct: 353 SEQLPLVYAGAGSNASSAFCGEGSLKDLDVKGKVVVCDRGGGISRIDKGKEVKNAGGAAM 412
Query: 421 ILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPE 480
IL N + + T+AD H LPA +V Y+AG IKAYINS++ PTA+++FKGT+IGK +APE
Sbjct: 413 ILTNGKPDGFSTLADPHSLPAAHVGYSAGLSIKAYINSSNKPTATLLFKGTIIGKSAAPE 472
Query: 481 VAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLS 540
+ FSSRGP+ ASPGILKPDI GPGVS+LAAWP S +N T++K F MISGTSMSCPHLS
Sbjct: 473 ITSFSSRGPSLASPGILKPDITGPGVSVLAAWPSSVDNRTDSKVAFNMISGTSMSCPHLS 532
Query: 541 GIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAN 600
GIAALLKS+HP+WSPAAIKSAIMTTAD++NL+G PI++ PAD+FAVGAGHVNPS+AN
Sbjct: 533 GIAALLKSSHPEWSPAAIKSAIMTTADVLNLKGDPILDETHEPADVFAVGAGHVNPSRAN 592
Query: 601 DPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLGSS 660
DPGL+Y+I +DY+ YLCG Y D Q+ I+ H VQCSK SSI EA+LNYPSFSV +GSS
Sbjct: 593 DPGLIYDIQPNDYIPYLCGLGYNDTQVRAIIRHKVQCSKESSIPEAQLNYPSFSVAMGSS 652
Query: 661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNA 720
RTVTNVG+ + Y I P+GV + V+P K+ FT+ NQK T++VTF R +
Sbjct: 653 ALKLQRTVTNVGEAKASYIVKISAPQGVDVSVKPRKLDFTQTNQKKTYTVTFERKDDGKT 712
Query: 721 SS---VQGYLSWVSATHTVRSPIAIGFE 745
S QG+L WVSA H+VRSPI++ FE
Sbjct: 713 GSKPFAQGFLEWVSAKHSVRSPISVKFE 740
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537203|ref|XP_002509668.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549567|gb|EEF51055.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/730 (63%), Positives = 550/730 (75%), Gaps = 12/730 (1%)
Query: 22 SNGIENDANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYG 81
S + ++ L+TYIV V KP + ++ ++ WY++FLP ++ +++ + R++Y
Sbjct: 30 STKVTGASSNLETYIVFVTKPPVGASKKSQV-IETWYQSFLP---ARKSNSNQQQRILYS 85
Query: 82 YRNVISGFAARLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLHQNSGFWKDSNL 141
YRNV+SGFAA+LTAEE K ME K GF+SAR + I TTHSPNFLGLHQN G W +SN
Sbjct: 86 YRNVVSGFAAKLTAEEAKFMEEKDGFVSARPQKIFPLHTTHSPNFLGLHQNLGLWGNSNY 145
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP- 200
GKGVIIGVLD GITP HPSFSDEGMP PPAKWKGKCE G CNNK+IGAR F + P
Sbjct: 146 GKGVIIGVLDTGITPDHPSFSDEGMPSPPAKWKGKCEFNGTACNNKLIGARTFQSDEHPS 205
Query: 201 ----PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPE 256
P D+ GHGTHTASTAAGNFV+GA++FG ANGTA GMAPLAHLA+YKVC +D GC E
Sbjct: 206 GDMEPFDDVGHGTHTASTAAGNFVDGASVFGNANGTAVGMAPLAHLAMYKVC-SDFGCSE 264
Query: 257 SIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS 316
S + AA+D AVEEGVD+LS+SLG S PF AD +A AF A Q GI VSCSAGNSGP++
Sbjct: 265 SDILAAMDTAVEEGVDILSLSLGGGSAPFSADGIAVGAFGAIQNGIFVSCSAGNSGPDNY 324
Query: 317 TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVK-NS 375
TL+NEAPW+LTVGASTIDRSI A +LGN E + GE++FQP+ PL+YPG N
Sbjct: 325 TLSNEAPWILTVGASTIDRSIRATVKLGNNEEFFGESLFQPQLSTQNFWPLIYPGKNGNQ 384
Query: 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVAD 435
SAA C ++L+S +V+GK+VLC RGG R+ KGK VKDAGG MIL+N+E Y T+AD
Sbjct: 385 SAAVCAEDSLESSEVEGKIVLCDRGGLVGRVEKGKVVKDAGGIGMILVNEESDGYSTLAD 444
Query: 436 NHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPG 495
HVLPA +VSY+ G RIK YINSTSSPTA VF+GTVIG K+AP V+ FSSRGP+ ASPG
Sbjct: 445 AHVLPASHVSYSDGMRIKNYINSTSSPTAMFVFEGTVIGLKTAPMVSSFSSRGPSFASPG 504
Query: 496 ILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSP 555
ILKPDIIGPGVSILAAWP S EN TNTK+TF MISGTSMSCPHLSGIAALLKSAHPDWSP
Sbjct: 505 ILKPDIIGPGVSILAAWPISVENKTNTKATFNMISGTSMSCPHLSGIAALLKSAHPDWSP 564
Query: 556 AAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVR 615
AAIKSAIMTTAD VNL G+PI++ LL AD+ A GAGHVNPSKA+DPGLVY+I DDY+
Sbjct: 565 AAIKSAIMTTADTVNLGGQPIVDERLLSADVLATGAGHVNPSKASDPGLVYDIQPDDYIP 624
Query: 616 YLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLGSSPQTYNRTVTNVGQDN 675
YLCG YTD+ I IV + V+CS+V SI EA+LNYPSFS+ G+ Q Y RTVTNVG
Sbjct: 625 YLCGLGYTDRDITYIVQYKVKCSEVGSIPEAQLNYPSFSIVFGAKTQIYTRTVTNVGPAT 684
Query: 676 SFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRD-QNSNASSVQGYLSWVSATH 734
S YT + P GV + V P KI+FT+ Q AT+SVTF + + SVQGYL W S H
Sbjct: 685 SSYTVSVAPPPGVDVTVTPSKIAFTQVKQTATYSVTFTNTGKGYSDPSVQGYLKWDSDQH 744
Query: 735 TVRSPIAIGF 744
+VRSPI++ F
Sbjct: 745 SVRSPISVVF 754
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071656|ref|XP_002303550.1| predicted protein [Populus trichocarpa] gi|222840982|gb|EEE78529.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/746 (63%), Positives = 556/746 (74%), Gaps = 20/746 (2%)
Query: 4 ILISLVYILSFSPTIAVTSNGI-----ENDANG-LQTYIVHVRKPKQEGNFSIKLDLDNW 57
+++ LV +S + A T G E G +TYIV V+KP++ + DLD+W
Sbjct: 13 VIVFLVGFISMFSSQAYTDEGKPLRTSETSQKGKFETYIVFVQKPEEGVSAD---DLDSW 69
Query: 58 YRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILE 117
Y++FLP I S +H+ RMVY YR+V +GFAA+LTAEE KAME K GF+SA+ + IL
Sbjct: 70 YKSFLPVTIPSS---NHQERMVYSYRHVATGFAAKLTAEEAKAMEDKDGFLSAKPQKILS 126
Query: 118 PQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKC 177
TTHSPNFLGL +N GFW++S GKGVIIGVLD GI+P HPSFSDEG+PPPP KWKGKC
Sbjct: 127 LHTTHSPNFLGLQKNLGFWRNSTYGKGVIIGVLDTGISPDHPSFSDEGVPPPPTKWKGKC 186
Query: 178 ELEGANCNNKIIGARNFLN-KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGM 236
G CNNK+IGAR+F + K+ PP D +GHGTHTASTAAGNFVN A++FG ANGTA GM
Sbjct: 187 NFNGTVCNNKLIGARDFTSSKAAPPFDEEGHGTHTASTAAGNFVNDASVFGNANGTAVGM 246
Query: 237 APLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFT 296
APLAHLAIYKVC +D GC +S + AA+DAAVE+GVDVLS+SLG S PFF D++A AF
Sbjct: 247 APLAHLAIYKVC-SDFGCADSDILAAMDAAVEDGVDVLSLSLGGGSAPFFEDSIAVGAFG 305
Query: 297 ASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQ 356
A+QKGI VSCSAGN GP + +L+NEAPW+LTVGASTIDRSI A LGN + GE++FQ
Sbjct: 306 ATQKGIFVSCSAGNEGPYNGSLSNEAPWILTVGASTIDRSIRADVLLGNSNHFFGESLFQ 365
Query: 357 PKDFPSKQLPLVYPGVKNS-SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDA 415
P + LVY G S SAAFC PE+L IDVKGK+VLC+RGGG RI KG+ VKDA
Sbjct: 366 SNSPP--YMSLVYAGAHGSQSAAFCAPESLTDIDVKGKIVLCERGGGIARIDKGQAVKDA 423
Query: 416 GGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGK 475
GGAAMILMND+ Y T+AD HVLPA +VSY+AG IKAYINST PTA+I+F GT IG
Sbjct: 424 GGAAMILMNDKDSGYSTLADAHVLPASHVSYSAGLSIKAYINSTQVPTATIMFLGTKIGD 483
Query: 476 KSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMS 535
K+AP VA FSSRGP+ ASPGILKPDIIGPGVSILAAWP S EN T+TKSTF +ISGTSMS
Sbjct: 484 KTAPTVASFSSRGPSLASPGILKPDIIGPGVSILAAWPVSVENKTDTKSTFNIISGTSMS 543
Query: 536 CPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVN 595
CPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD+VNL +PI++ LLPAD+ A GAG VN
Sbjct: 544 CPHLSGIAALLKSAHPDWSPAAIKSAIMTTADLVNLGNQPILDERLLPADILATGAGQVN 603
Query: 596 PSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSV 655
PSKA+DPGLVY+I DDY+ YLCG Y D+ I IV V CS+ SSI EA+LNYPSFS+
Sbjct: 604 PSKASDPGLVYDIQPDDYIPYLCGLGYPDKDISYIVQRQVNCSEESSILEAQLNYPSFSI 663
Query: 656 KLGSSP--QTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFI 713
G +P QTY RTVTNVG NS YT + P GV + V P I FT Q AT+SVTF
Sbjct: 664 VYGPNPATQTYTRTVTNVGPPNSSYTAFVDPPPGVNVTVTPKNIIFTNTEQTATYSVTFT 723
Query: 714 RDQNSNASSV-QGYLSWVSATHTVRS 738
SN + QGY+ WVS H++RS
Sbjct: 724 ATSESNNDPIGQGYIRWVSDKHSIRS 749
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537205|ref|XP_002509669.1| Cucumisin precursor, putative [Ricinus communis] gi|223549568|gb|EEF51056.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/727 (61%), Positives = 549/727 (75%), Gaps = 16/727 (2%)
Query: 32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAA 91
LQTYIVHV +P+ FS DL NW+++FL + + S + + RM+Y Y+N+ISGF+A
Sbjct: 44 LQTYIVHVNQPEGR-TFSQPEDLKNWHKSFLSFSTASS-EEEQQQRMLYSYQNIISGFSA 101
Query: 92 RLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLD 151
RLT EEVKAME +GF+SA +E L QTTH+P+FLGLHQ G WKDS+ GKGVIIG+LD
Sbjct: 102 RLTQEEVKAMEEITGFVSACLERKLRLQTTHTPSFLGLHQQMGLWKDSDFGKGVIIGILD 161
Query: 152 MGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL--------NKSEPPID 203
G+ P HPSFSDEGMP PPAKWKG+CE + CNNK+IGAR F +EPPID
Sbjct: 162 GGVYPSHPSFSDEGMPLPPAKWKGRCEFNASECNNKLIGARTFNLAAKTMKGAPTEPPID 221
Query: 204 NDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNA 261
DGHGTHTASTAAG FV +++ G A GTA GMAP AHLAIYKVC D CPES V A
Sbjct: 222 VDGHGTHTASTAAGGFVYNSDVLGNAKGTAVGMAPFAHLAIYKVCFGDPNDDCPESDVLA 281
Query: 262 AIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANE 321
+DAAV++GVDVLS+SLG S+PFF D +A +F A QKGI VSCSAGNSGP+ STL+NE
Sbjct: 282 GLDAAVDDGVDVLSLSLGDVSMPFFQDNIAIGSFAAIQKGIFVSCSAGNSGPSKSTLSNE 341
Query: 322 APWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNS-SAAFC 380
APW+LTVGASTIDR IVA+ +LGN E DGE++ QP +FP+ LP+VY G+ + +AFC
Sbjct: 342 APWILTVGASTIDRRIVAIAKLGNGEELDGESVSQPSNFPTTLLPIVYAGMNSKPDSAFC 401
Query: 381 LPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP 440
L+ ++VK KVV+C+RGGG RI KG +VK+AGGAAMIL+NDE + T+AD HVLP
Sbjct: 402 GEGALEGMNVKDKVVMCERGGGIGRIAKGDEVKNAGGAAMILVNDETNGFSTIADAHVLP 461
Query: 441 AVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPD 500
A +VS+AAG +IKAYINST +P A+I+FKGTVIG S+P V FSSRGP+ ASPGILKPD
Sbjct: 462 ATHVSFAAGLKIKAYINSTKTPMATILFKGTVIGDSSSPAVTSFSSRGPSLASPGILKPD 521
Query: 501 IIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS 560
IIGPGVSILAAWPF +N TNTK TF ++SGTSMSCPHLSGIAALLKS+HP WSPAAIKS
Sbjct: 522 IIGPGVSILAAWPFPLDNNTNTKLTFNIMSGTSMSCPHLSGIAALLKSSHPYWSPAAIKS 581
Query: 561 AIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGK 620
AI+TTADI+N+EGKPI++ PAD FA GAGHVNPS+ANDPGLVY+I DDY+ YLCG
Sbjct: 582 AIVTTADILNMEGKPIVDETHQPADFFATGAGHVNPSRANDPGLVYDIQPDDYIPYLCGL 641
Query: 621 NYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLGSSPQTYNRTVTNVGQDNSFYTH 680
NYTD+Q+ I + CS + +IAE +LNYPSFSV LG PQT+ RTVTNVG NS +
Sbjct: 642 NYTDEQVSIIAHRPISCSTIQTIAEGQLNYPSFSVTLG-PPQTFIRTVTNVGYANSVFAA 700
Query: 681 HIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSV--QGYLSWVSATHTVRS 738
I P GV + V+P ++ F++ NQKAT+S+TF +S QGY++WVS + V S
Sbjct: 701 TITSPPGVAVSVKPSRLYFSKLNQKATYSITFSHTGYGAKTSEFGQGYITWVSDKYFVGS 760
Query: 739 PIAIGFE 745
PI++ F+
Sbjct: 761 PISVRFK 767
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459724|ref|XP_004147596.1| PREDICTED: subtilisin-like protease SDD1-like [Cucumis sativus] gi|449513398|ref|XP_004164315.1| PREDICTED: subtilisin-like protease SDD1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/726 (62%), Positives = 536/726 (73%), Gaps = 24/726 (3%)
Query: 32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAA 91
L TYIVHV+KP+ + DL++W+R+FLP ++ S + ++Y YRNV+SGF+A
Sbjct: 30 LHTYIVHVKKPE------VVDDLESWHRSFLPTSLENS---EEQPTLLYSYRNVMSGFSA 80
Query: 92 RLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLD 151
RLT E VKAME K GF+SAR E I+ TTHSPNFLGL++ GFWKDSN GKGVIIGVLD
Sbjct: 81 RLTEEHVKAMEEKDGFVSARRETIVHLHTTHSPNFLGLNRQFGFWKDSNFGKGVIIGVLD 140
Query: 152 MGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP----------- 200
GITP HPSF D GMP PPAKWKG+CE + CNNK+IGAR+ S+
Sbjct: 141 GGITPSHPSFVDAGMPQPPAKWKGRCEFNFSACNNKLIGARSLNLASQALKGKITTLDDS 200
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
PID DGHGTHTASTAAG FV+GA G A GTA GMAPLAHLAIYKVC + C +
Sbjct: 201 PIDEDGHGTHTASTAAGTFVDGAEALGNAFGTAVGMAPLAHLAIYKVCFGE-SCSNVDIL 259
Query: 261 AAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN 320
A +DAAVE+GVDVLSISLG P +PFFAD A AF A QKGI VSCSA NSGP ++TL+N
Sbjct: 260 AGLDAAVEDGVDVLSISLGGPPVPFFADITAIGAFAAIQKGIFVSCSAANSGPFNATLSN 319
Query: 321 EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFC 380
EAPW+LTV ASTIDR I A +LGN E +DGE++FQP DFP LPLV+PG KN + A C
Sbjct: 320 EAPWILTVAASTIDRKITATAKLGNGEEFDGESLFQPNDFPQTFLPLVFPGEKNETVALC 379
Query: 381 LPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP 440
+LK+IDVKGKVV+C RGGG RI KG +VK+AGGAAMIL+N E + T AD HVLP
Sbjct: 380 AEGSLKNIDVKGKVVVCDRGGGIARIAKGVEVKNAGGAAMILLNAESDGFTTEADAHVLP 439
Query: 441 AVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPD 500
A +VS+ A +IKAYINST+ PTA+IVFKGT IG +P +A FSSRGP+ ASPGILKPD
Sbjct: 440 ASHVSHTAALKIKAYINSTTYPTATIVFKGTTIGDDFSPAIAAFSSRGPSLASPGILKPD 499
Query: 501 IIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS 560
I GPGVSILAAWPF +N TNTKSTF ++SGTSMSCPHLSGIAAL+KSAHPDWSPAAIKS
Sbjct: 500 ITGPGVSILAAWPFPLDNNTNTKSTFNIVSGTSMSCPHLSGIAALIKSAHPDWSPAAIKS 559
Query: 561 AIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGK 620
+IMTTA+I NLEG PI++ L PADLFA+GAGHVNPSKA DPGLVY+I DDY+ YLCG
Sbjct: 560 SIMTTANITNLEGNPIVDQTLQPADLFAIGAGHVNPSKAVDPGLVYDIQPDDYIPYLCGL 619
Query: 621 NYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLGSSPQTYNRTVTNVGQDNSFYTH 680
YT+ Q+ I + C +SI E ELNYPSF VKLG QT++RTVT VG Y
Sbjct: 620 GYTNNQVSLIAHKPIDCLTTTSIPEGELNYPSFMVKLGQV-QTFSRTVTYVGSGREVYNV 678
Query: 681 HIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASS--VQGYLSWVSATHTVRS 738
I PEGV + V+P K+ F+ NQKAT+SVTF R + + S+ +GYL WVSA H VRS
Sbjct: 679 VIEAPEGVSVTVRPRKVIFSALNQKATYSVTFKRIGSISPSTEFAEGYLKWVSAKHLVRS 738
Query: 739 PIAIGF 744
PI++ F
Sbjct: 739 PISVKF 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058637|ref|XP_002299578.1| predicted protein [Populus trichocarpa] gi|222846836|gb|EEE84383.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/696 (62%), Positives = 529/696 (76%), Gaps = 4/696 (0%)
Query: 51 KLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISA 110
+ +LD+WY++FLP + + + ++ R+V+ Y NV++GFAA+LT +E KAME K GF+SA
Sbjct: 6 REELDSWYQSFLP---AVTTSSSNQQRLVHSYHNVVTGFAAKLTEKEAKAMEMKEGFVSA 62
Query: 111 RVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPP 170
+ + +TTH+PNFLGL QN GFW SN GKGVIIGVLD GITP HPSFSDEGMPPPP
Sbjct: 63 HPQKVFHVKTTHTPNFLGLQQNLGFWNHSNYGKGVIIGVLDTGITPSHPSFSDEGMPPPP 122
Query: 171 AKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQAN 230
AKWKGKCE G CNNK+IGARNF + +PP+D++GHGTHTASTAAG+ V GA+ + Q N
Sbjct: 123 AKWKGKCEFNGTLCNNKLIGARNFDSAGKPPVDDNGHGTHTASTAAGSRVQGASFYDQLN 182
Query: 231 GTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAM 290
GTA G+A AHLAIY+VC C ES + A +D AVE+G DVLS+SLG+ SLPF+ D++
Sbjct: 183 GTAVGIASSAHLAIYQVCSGFGSCEESNILAGMDTAVEDGADVLSLSLGAGSLPFYEDSI 242
Query: 291 ATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYD 350
A AF A QKGI VSC+AGN GP +L+NEAPW+LTVGAST+DRSI A LGN+ +YD
Sbjct: 243 AIGAFGAIQKGIFVSCAAGNEGPFKGSLSNEAPWILTVGASTVDRSIRATVLLGNKASYD 302
Query: 351 GETIFQPKDFPSKQLPLVYPGVKNS-SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKG 409
G++ +QP +F S LPL+Y G S +AAFC P +LK +DVKGKVVLC+ GG ++ + KG
Sbjct: 303 GQSFYQPTNFSSTLLPLIYAGANGSDTAAFCDPGSLKDVDVKGKVVLCESGGFSESVDKG 362
Query: 410 KDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFK 469
++VKDAGGAAMI+MNDEL T AD HVLPA V+YA G IKAYINSTSSP A+I+FK
Sbjct: 363 QEVKDAGGAAMIIMNDELSGNITTADFHVLPASDVTYADGLSIKAYINSTSSPMATILFK 422
Query: 470 GTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMI 529
GTV G AP++A FSSRGP+ SPGILKPDIIGPGV ILAAWP++ +N NTKSTF MI
Sbjct: 423 GTVFGVPYAPQLADFSSRGPSLESPGILKPDIIGPGVDILAAWPYAVDNNRNTKSTFNMI 482
Query: 530 SGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAV 589
SGTSM+ PHLSGIAALLKS+HPDWSPAAIKSAIMTTA++ NL G PI + P D+FA+
Sbjct: 483 SGTSMATPHLSGIAALLKSSHPDWSPAAIKSAIMTTANLTNLGGTPITDDSFGPVDVFAI 542
Query: 590 GAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELN 649
G+GHVNP+KA+DPGLVY+I DDY+ YLCG Y + ++ IV V CS SSI EA+LN
Sbjct: 543 GSGHVNPTKADDPGLVYDIQPDDYIPYLCGLGYNNTEVGIIVQRPVTCSNSSSIPEAQLN 602
Query: 650 YPSFSVKLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFS 709
YPSFS+KLGSSPQTY RTVTNVG S Y II P+GV + V P+ I F + KA +S
Sbjct: 603 YPSFSIKLGSSPQTYTRTVTNVGPFKSSYIAEIIAPQGVDVKVTPNAIPFGGGDPKAAYS 662
Query: 710 VTFIRDQNSNASSVQGYLSWVSATHTVRSPIAIGFE 745
VTF R N N QGYL+WVSA H VR+PIA+ FE
Sbjct: 663 VTFTRTANVNLPFSQGYLNWVSADHVVRNPIAVTFE 698
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071660|ref|XP_002303551.1| predicted protein [Populus trichocarpa] gi|222840983|gb|EEE78530.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/707 (62%), Positives = 537/707 (75%), Gaps = 18/707 (2%)
Query: 53 DLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARV 112
DL++WY++FLP + + S + RM+Y Y+NV+SGFAARLT EEVK+ME K GF+SAR
Sbjct: 6 DLESWYQSFLPVSTASS---EKQQRMLYAYQNVMSGFAARLTQEEVKSMEEKDGFLSARP 62
Query: 113 ENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAK 172
E IL QTTH+P FLGLHQ GFWK+SN GKGVIIGVLD GI P HPSFSDEGMPPPPAK
Sbjct: 63 ERILHLQTTHTPRFLGLHQELGFWKESNFGKGVIIGVLDGGIFPSHPSFSDEGMPPPPAK 122
Query: 173 WKGKCELEGANCNNKIIGARNF---------LNKSEPPIDNDGHGTHTASTAAGNFVNGA 223
WKG+C+ ++CNNK+IGAR+F +EPPID DGHGTHTASTAAG FV A
Sbjct: 123 WKGRCDFNASDCNNKLIGARSFNIAAKAKKGSAATEPPIDVDGHGTHTASTAAGAFVKDA 182
Query: 224 NLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLGSP 281
+ G A GTA G+AP AHLAIYKVC D G CPES + A +DAAV++GVDVLS+SLG
Sbjct: 183 EVLGNARGTAVGIAPHAHLAIYKVCFGDPGDDCPESDILAGLDAAVQDGVDVLSLSLGED 242
Query: 282 SLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALT 341
S+P F D +A +F A QKGI VSCSAGNSGP + TL+NEAPW+LTVGAST+DR A
Sbjct: 243 SVPLFNDTIAIGSFAAIQKGIFVSCSAGNSGPFNGTLSNEAPWILTVGASTVDRRFSATA 302
Query: 342 QLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNS-SAAFCLPETLKSIDVKGKVVLCQRG 400
+LGN E DGE++ Q +FPS LPLVY G+ +++ C L+ +DVKGK+VLC+RG
Sbjct: 303 RLGNGEQIDGESLSQHSNFPSTLLPLVYAGMSGKPNSSLCGEGALEGMDVKGKIVLCERG 362
Query: 401 GGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTS 460
GG RI KG +VK+AGGAAMILMN+E+ + T AD HVLPA +VS+AAG +IKAYINST
Sbjct: 363 GGIGRIAKGGEVKNAGGAAMILMNEEVDGFSTNADVHVLPATHVSFAAGLKIKAYINSTQ 422
Query: 461 SPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENIT 520
+P A+I+FKGTVIG S+P VA FSSRGP+ ASPGILKPDIIGPGVSILAAWPF +N T
Sbjct: 423 APMATILFKGTVIGDPSSPFVASFSSRGPSLASPGILKPDIIGPGVSILAAWPFPLDNNT 482
Query: 521 NTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHH 580
++KSTF +ISGTSMSCPHLSGIAALLKS+HP WSPAAIKSAIMTTAD +N+EGK I++
Sbjct: 483 SSKSTFNIISGTSMSCPHLSGIAALLKSSHPYWSPAAIKSAIMTTADTLNMEGKLIVDQT 542
Query: 581 LLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKV 640
L PAD+FA GAGHVNPS+AN+PGLVY+I DDY+ YLCG Y D ++ IV V+CS+
Sbjct: 543 LQPADIFATGAGHVNPSRANNPGLVYDIQPDDYIPYLCGLGYADNEVSIIVHEQVKCSEK 602
Query: 641 SSIAEAELNYPSFSVKLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFT 700
SI E ELNYPSF+V LG S QT+ RTVTNVG NS Y I+ P GV + V+P K+ F+
Sbjct: 603 PSIPEGELNYPSFAVTLGPS-QTFTRTVTNVGDVNSAYEVAIVSPPGVDVTVKPSKLYFS 661
Query: 701 EKNQKATFSVTFIRDQNSN--ASSVQGYLSWVSATHTVRSPIAIGFE 745
+ NQKAT+SV F R + + + QGY+ W SA +TVRSPIA+ +
Sbjct: 662 KVNQKATYSVAFSRTEYGGKISETAQGYIVWASAKYTVRSPIAVSLK 708
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514105|ref|XP_003525747.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/752 (59%), Positives = 553/752 (73%), Gaps = 19/752 (2%)
Query: 4 ILISLVYILSFSPTIAVTSNGIENDANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLP 63
I+ ++LSF A N + + + +TYI+HV P Q + DL++WYR+F+P
Sbjct: 5 FFIAFTFVLSFHIHFA-HGNELNSATSSSKTYIIHVTGP-QGKTLAQSEDLESWYRSFMP 62
Query: 64 DNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILEPQTTHS 123
I + + + RM+Y YRNV+SGFAARLT EE+++++ K+GFISA E +L QTTH+
Sbjct: 63 PTI---MSSEEQPRMIYSYRNVMSGFAARLTEEELRSVQKKNGFISAHPERMLHRQTTHT 119
Query: 124 PNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGAN 183
P FLGL Q+ GFWK+SN GKGVI+GV+D GI P HPSFSD GMPPPP KWKG+CEL
Sbjct: 120 PQFLGLQQDMGFWKESNFGKGVIVGVVDSGIEPDHPSFSDAGMPPPPLKWKGRCELNATF 179
Query: 184 CNNKIIGARNF------LNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMA 237
CNNK+IGAR+F + ++ PID DGHGTHT+STAAG FV+ A + G A GTAAG+A
Sbjct: 180 CNNKLIGARSFNLAATAMKGADSPIDEDGHGTHTSSTAAGAFVDHAEVLGNAKGTAAGIA 239
Query: 238 PLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLG-SPSLPFFADAMATAAFT 296
P AHLA+Y+VC + C ES + AA+DAAVE+GVDV+SISLG S PFF D++A AF
Sbjct: 240 PYAHLAMYRVCFGE-DCAESDILAALDAAVEDGVDVISISLGLSEPPPFFNDSIAIGAFA 298
Query: 297 ASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQ 356
A QKGI VSC+AGNSGP +L N APW+LTVGAS IDRSI A +LGN + +DGE++FQ
Sbjct: 299 AMQKGIFVSCAAGNSGPFHGSLVNGAPWVLTVGASNIDRSIAATAKLGNGQEFDGESVFQ 358
Query: 357 PKDFPSKQLPLVYPGVKN--SSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKD 414
P DF LPL Y G KN AAFC +L D +GKVVLC+RGGG RI KG++VK
Sbjct: 359 PSDFSPTLLPLAYAG-KNGKQEAAFCANGSLNDCDFRGKVVLCERGGGIGRIAKGEEVKR 417
Query: 415 AGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIG 474
GGAAMILMNDE + +AD HVLPA ++SY +G +IKAYINST+ PTA+I+FKGT+IG
Sbjct: 418 VGGAAMILMNDESNGFSVLADVHVLPATHLSYDSGLKIKAYINSTAIPTATILFKGTIIG 477
Query: 475 KKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSM 534
AP V FSSRGPN SPGILKPDIIGPGV+ILAAWPF N T++KSTF ++SGTSM
Sbjct: 478 NSLAPAVTSFSSRGPNLPSPGILKPDIIGPGVNILAAWPFPLNNDTDSKSTFNIMSGTSM 537
Query: 535 SCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHV 594
SCPHLSG+AALLKS+HP WSPAAIKSAIMT+ADI+N E K I++ L PAD+FA G+GHV
Sbjct: 538 SCPHLSGVAALLKSSHPHWSPAAIKSAIMTSADIINFEHKLIVDETLYPADVFATGSGHV 597
Query: 595 NPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFS 654
NPS+ANDPGLVY+I DDY+ YLCG Y D ++ I + CS+ SSI E ELNYPSFS
Sbjct: 598 NPSRANDPGLVYDIQPDDYIPYLCGLGYGDTEVGIIAHKTITCSETSSIPEGELNYPSFS 657
Query: 655 VKLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIR 714
V LG SPQT+ RTVTNVG+ NS Y ++ PEGV++ V+P+ ++F+E NQK T+SV+F R
Sbjct: 658 VVLG-SPQTFTRTVTNVGEANSSYVVMVMAPEGVEVKVRPNNLTFSEANQKETYSVSFSR 716
Query: 715 DQNSN--ASSVQGYLSWVSATHTVRSPIAIGF 744
++ N A QG+L WVSA HTVRSPI + F
Sbjct: 717 IESGNETAEYAQGFLQWVSAKHTVRSPILVDF 748
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| UNIPROTKB|Q8H047 | 754 | OJ1263H11.8 "Subtilisin N-term | 0.974 | 0.962 | 0.499 | 3.5e-185 | |
| UNIPROTKB|Q8RVC2 | 759 | OSJNBb0005J14.3 "Putative seri | 0.947 | 0.930 | 0.513 | 1.6e-182 | |
| UNIPROTKB|Q7XPR8 | 760 | OSJNBa0065O17.13 "Os04g0559000 | 0.974 | 0.955 | 0.468 | 7.6e-167 | |
| UNIPROTKB|Q6ESH8 | 791 | P0461B08.17 "Subtilisin-like s | 0.896 | 0.844 | 0.454 | 3.7e-158 | |
| UNIPROTKB|Q7XPR9 | 793 | OSJNBa0065O17.12 "Os04g0558900 | 0.981 | 0.921 | 0.436 | 4.9e-156 | |
| UNIPROTKB|Q0D3H9 | 781 | Os07g0685900 "cDNA clone:001-1 | 0.978 | 0.933 | 0.432 | 2.4e-154 | |
| TAIR|locus:2020245 | 775 | SDD1 "AT1G04110" [Arabidopsis | 0.744 | 0.716 | 0.439 | 3.1e-153 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.750 | 0.738 | 0.456 | 6.4e-153 | |
| TAIR|locus:2025457 | 774 | SBTI1.1 "AT1G01900" [Arabidops | 0.947 | 0.912 | 0.422 | 2.8e-144 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.744 | 0.736 | 0.449 | 3.4e-143 |
| UNIPROTKB|Q8H047 OJ1263H11.8 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1796 (637.3 bits), Expect = 3.5e-185, P = 3.5e-185
Identities = 378/757 (49%), Positives = 494/757 (65%)
Query: 1 MAAILISLVYILSFSPTIAVTSNGIENDANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRT 60
+ A+++S+V +S S +AV S E + Y+VH+ P+++G + ++L W+R+
Sbjct: 7 LLAVVVSMV--VS-SAMLAVVSCARER-----KNYVVHL-DPREDGGVADSVEL--WHRS 55
Query: 61 FLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILEPQT 120
FLP+ ++ R++Y Y +V+SGFAA+LT +E +AM K G I E L T
Sbjct: 56 FLPEATPEAA-GDDGPRIIYSYSHVLSGFAAQLTDDEAEAMRKKEGCIRLYPEEFLPLAT 114
Query: 121 THSPNFLGLHQ-NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCE- 178
THSP FLGLH N GFW S G+GV+IG+LD GI P HPSF D GMPPPP KWKG CE
Sbjct: 115 THSPGFLGLHLGNDGFWSRSGFGRGVVIGLLDTGILPSHPSFGDAGMPPPPKKWKGTCEF 174
Query: 179 --LEGANCNNKIIGARNF----LNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGT 232
+ G CNNKIIGAR F +N + PP+D+ GHGTHTASTAAGNFV A++ G A+GT
Sbjct: 175 KAISGGGCNNKIIGARAFGSAAVNATAPPVDDAGHGTHTASTAAGNFVENADVRGNAHGT 234
Query: 233 AAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLG-SPSLPXXXXXXX 291
A+GMAP AHLAIYKVC T C + A +DAAV++GVDVLS S+G SP P
Sbjct: 235 ASGMAPHAHLAIYKVC-TRSRCSIMDIIAGLDAAVKDGVDVLSFSIGASPGAPFNYDLVA 293
Query: 292 XXXXXXSQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDG 351
+ GI VS +AGN GP ++T+ N APWMLTV A T+DR+I LGN + +DG
Sbjct: 294 IATFKAMEHGIFVSSAAGNDGPVAATVGNGAPWMLTVAAGTMDRAIRTTVTLGNGQVFDG 353
Query: 352 ETIFQPKDFPS-KQLPLVYPGVK-NSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKG 409
E+++QP++ + +QLPLV+PG+ +S + C TL +V GKVVLC+ + + +G
Sbjct: 354 ESLYQPRNNTAGRQLPLVFPGLNGDSDSRDC--STLVEEEVSGKVVLCESRSIVEHVEQG 411
Query: 410 KDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFK 469
+ V GGA MILMN + Y T AD HVLPA +VSYAAG +I +YI ST PTAS+ FK
Sbjct: 412 QTVSAYGGAGMILMNKPVEGYTTFADAHVLPASHVSYAAGSKILSYIKSTPKPTASVTFK 471
Query: 470 GTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSE---ENITNTKSTF 526
GTV+G AP VA FSSRGPN ASPG+LKPDI GPG++ILAAW E E +F
Sbjct: 472 GTVMGSSPAPSVAFFSSRGPNKASPGVLKPDITGPGMNILAAWAPGEMHTEFADGVSLSF 531
Query: 527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADL 586
M SGTSMS PHLSGIAA++KS HP WSPAAIKSAIMT++D+ + +G PI + A
Sbjct: 532 FMESGTSMSTPHLSGIAAIIKSLHPTWSPAAIKSAIMTSSDVADHDGVPIKDEQYRSASF 591
Query: 587 FAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEA 646
+ +GAG+VNPS+A DPGLVY++ +DY+ YLCG D ++ I V C+K+ +I EA
Sbjct: 592 YTMGAGYVNPSRAVDPGLVYDLHTNDYIAYLCGLGIGDDGVKEITHRRVSCAKLKAITEA 651
Query: 647 ELNYPSFSVKLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKA 706
ELNYPS VKL S P T +R VTNVG+ NS YT + +P+ V + V P + F+ +K
Sbjct: 652 ELNYPSLVVKLLSQPITVHRIVTNVGKANSVYTAVVDMPKNVAVTVHPPLLRFSRAYEKQ 711
Query: 707 TFSVTFIRDQNSNA-SSVQGYLSWVSATHTVRSPIAI 742
+F+VT +R A + V+G L WVS H VRSPI I
Sbjct: 712 SFTVT-VRWAGQPAVAGVEGNLKWVSDEHVVRSPIVI 747
|
|
| UNIPROTKB|Q8RVC2 OSJNBb0005J14.3 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1771 (628.5 bits), Expect = 1.6e-182, P = 1.6e-182
Identities = 374/728 (51%), Positives = 469/728 (64%)
Query: 33 QTYIVHVRKPKQEGNFSI-KLDLDNWYRTFLPDNI---SKSIDAHHRSRMVYGYRNVISG 88
+ YIVH+ +P+ E + ++ W+R+FLP S S A R+VY Y +V +G
Sbjct: 31 KNYIVHL-EPRDEAAAAAGDASVEEWHRSFLPQVAKLDSDSDGADGGPRIVYSYSDVFTG 89
Query: 89 FAARLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLHQ-NSGFWKDSNLGKGVII 147
FAARLT EE +A+ +G + E L TT SP FLGLH N FW S G+GV+I
Sbjct: 90 FAARLTDEEAEAVRATAGCLRLYPEEFLPLATTRSPGFLGLHLGNEAFWSHSGFGRGVVI 149
Query: 148 GVLDMGITPGHPSFSDEGMPPPPAKWKGKCELE---GANCNNKIIGARNF----LNKSEP 200
G+LD GI P HPSF D+G+ PPP WKG CE + G CNNKIIGAR F +N S P
Sbjct: 150 GILDTGILPSHPSFGDDGLQPPPKNWKGTCEFKAIAGGGCNNKIIGARAFGSAAVNSSAP 209
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
P+D+ GHGTHTASTAAGNFV AN+ G A+GTA+GMAP AHLAIYKVC T C +
Sbjct: 210 PVDDAGHGTHTASTAAGNFVENANVRGNADGTASGMAPHAHLAIYKVC-TRSRCSIMDII 268
Query: 261 AAIDAAVEEGVDVLSISLGSPS-LPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLA 319
A +DAAV++GVDVLS S+G+ S ++GI+VSC+AGNSGP+ T+
Sbjct: 269 AGLDAAVKDGVDVLSFSIGASSGTQFNYDPIAIAGFKAMERGIVVSCAAGNSGPDPGTVG 328
Query: 320 NEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP-KDFPSKQLPLVYPGVKNSSAA 378
N APWMLTV A T+DR+I +LGN + +DGE++FQP + + LPLVYPG S +
Sbjct: 329 NGAPWMLTVAAGTMDRAIRTTVRLGNGDEFDGESLFQPGNNSAANPLPLVYPGADGSDTS 388
Query: 379 F-CLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNH 437
C L+ +V GKVVLC+ G RI G+ V GGA +I+MN Y T AD H
Sbjct: 389 RDC--SVLRDAEVTGKVVLCESRGLNGRIEAGQTVAAYGGAGIIVMNRAAEGYTTFADAH 446
Query: 438 VLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGIL 497
VLPA +VS+ AG +I AY+NST +PTASI FKGTVIG +P V FSSRGP+ ASPGIL
Sbjct: 447 VLPASHVSFDAGTKIAAYVNSTDNPTASIAFKGTVIGSSPSPAVTFFSSRGPSKASPGIL 506
Query: 498 KPDIIGPGVSILAAWPFSEENITNTKS---TFTMISGTSMSCPHLSGIAALLKSAHPDWS 554
KPDI GPG++ILAAW SE + + +F + SGTSMS PHLSGIAALLKS HPDWS
Sbjct: 507 KPDITGPGMNILAAWAPSESHTEFSDGVGLSFFVESGTSMSTPHLSGIAALLKSLHPDWS 566
Query: 555 PAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYV 614
PAAIKSAIMTT+D V+ G PI + A +A+GAG+VNP+ A DPGLVY++ DDY+
Sbjct: 567 PAAIKSAIMTTSDAVDRTGVPIKDEQYRHATFYAMGAGYVNPALAFDPGLVYDLHADDYI 626
Query: 615 RYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLGSSPQTYNRTVTNVGQD 674
YLCG D ++ I V CS V +I EAELNYPS V L + P T NRTVTNVG+
Sbjct: 627 PYLCGLGIGDDGVKEIAHRPVTCSDVKTITEAELNYPSLVVNLLAQPITVNRTVTNVGKP 686
Query: 675 NSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVSATH 734
+S YT + +P+ V +IVQP + FTE + +F+VT N + +G L WVS H
Sbjct: 687 SSVYTAVVDMPKDVSVIVQPPMLRFTELKEMQSFTVTVRWAGQPNVAGAEGNLKWVSDEH 746
Query: 735 TVRSPIAI 742
VRSPI I
Sbjct: 747 IVRSPIII 754
|
|
| UNIPROTKB|Q7XPR8 OSJNBa0065O17.13 "Os04g0559000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1623 (576.4 bits), Expect = 7.6e-167, P = 7.6e-167
Identities = 356/760 (46%), Positives = 464/760 (61%)
Query: 11 ILSFSPTIAVTSNGIENDANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSI 70
+LSF P + V + +E + + T+IVHV+ P++ + D WY+TFLP++ + +
Sbjct: 8 LLSFLPFVFVLAIAVEATGDEIGTFIVHVQ-PQESHVAATADDRKEWYKTFLPED-GRLV 65
Query: 71 DAHHRSRMVYGYRNVISGF-AARLTAEEVKAMETKSGFI-SARVENILEPQTTHSPNFLG 128
A+H + R A V A+ ++ + + L P G
Sbjct: 66 HAYHHVASGFAARLTRQELDAVSAMPGFVSAVPDQTHTLQTTHTPQFLGLSAPPPPQ--G 123
Query: 129 LHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGAN-CNNK 187
+S S G GVI+GV+D G+ P HPSFSD GMPPPPAKWKG C+ G + CNNK
Sbjct: 124 KRWSSSSHGGSGAGAGVIVGVIDTGVFPDHPSFSDAGMPPPPAKWKGHCDFNGGSVCNNK 183
Query: 188 IIGARNFL----NKSE------PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMA 237
+IGAR F+ N S PP+D+ GHGTHTASTAAG V GA++ GQ G AAG+A
Sbjct: 184 LIGARTFIANATNSSSSYGERLPPVDDVGHGTHTASTAAGAAVPGAHVLGQGLGVAAGIA 243
Query: 238 PLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXX 297
P AH+A+YKVC + C S + A +DAA+ +G DV+SIS+G PS+P
Sbjct: 244 PHAHVAVYKVCPNE-SCAISDILAGVDAAIADGCDVISISIGGPSVPFHENPVAVGTFGA 302
Query: 298 SQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP 357
+KG+ VS +AGN+GPN S++ N+APWMLTV AST+DRSI +LGN +DGE+++QP
Sbjct: 303 MEKGVFVSMAAGNAGPNVSSVINDAPWMLTVAASTMDRSIRTTVRLGNGLYFDGESLYQP 362
Query: 358 KDFPSKQLPLVYPGVKNS-SAAFCLPETLKSIDVKGKVVLCQRGGGTQ--RIRKGKDVKD 414
D PS PLVY G SA FC +L DV+GK+V+C+ GGG RI KG V+
Sbjct: 363 NDSPSTFYPLVYAGASGKPSAEFCGNGSLDGFDVRGKIVVCEFGGGPNITRIIKGAVVQS 422
Query: 415 AGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIG 474
AGGA MIL N Y T+A+ HVLPA +V Y AG IKAYINST++P A I+ +GTV+G
Sbjct: 423 AGGAGMILPNHFPEGYTTLAEAHVLPASHVDYVAGLAIKAYINSTANPVAQILPRGTVLG 482
Query: 475 KKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPF----SEENITNTKSTFTMIS 530
AP +A FSSRGP+ +PGILKPDI GPGV++LAAWPF S + TF +IS
Sbjct: 483 TTPAPAMAFFSSRGPSVQNPGILKPDITGPGVNVLAAWPFQVGPSSAQVF-PGPTFNIIS 541
Query: 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVG 590
GTSMS PHLSG+AA +KS HP WSPAAIKSAIMTTADI + G I++ PA+ FA G
Sbjct: 542 GTSMSTPHLSGVAAFIKSRHPHWSPAAIKSAIMTTADITDRSGNQILDEQRAPANFFATG 601
Query: 591 AGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNY 650
AGHVNP +A DPGLVY+I+ DYV YLCG YT Q++ I V CS V++I E +LNY
Sbjct: 602 AGHVNPERAADPGLVYDIAPCDYVGYLCGL-YTSQEVSVIARRPVNCSAVAAIPEHQLNY 660
Query: 651 PSFSVKL-----GSSPQTYNRTVTNVGQ-DNSFYTHHIIVPEGVKIIVQPDKISFTEKNQ 704
PS SV+ S P RT NVG+ + +Y ++ V + V P + FT NQ
Sbjct: 661 PSISVRFPRAWNSSEPVLVRRTAKNVGEVPSEYYAAVDMLDTTVTVRVFPRTLRFTGVNQ 720
Query: 705 KATFSVTFIRDQNSNASSVQGYLSWVSATHTVRSPIAIGF 744
+ F+V Q A VQG + WVS THTVRSP+++ F
Sbjct: 721 EKDFTVVVWPGQGG-ARVVQGAVRWVSETHTVRSPVSVTF 759
|
|
| UNIPROTKB|Q6ESH8 P0461B08.17 "Subtilisin-like serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 318/699 (45%), Positives = 428/699 (61%)
Query: 71 DAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLH 130
D +R++Y YRNV++GF AR+T EEV M K F+ A E + TT++P +GL
Sbjct: 79 DPGAETRLIYSYRNVVNGFCARVTREEVYEMAKKDWFVKAIPEKTYKLMTTYTPKMVGLT 138
Query: 131 -----QNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCN 185
+ G W SN+G+G+IIGVLD GI GHPSF GM PPPA+WKG+C+ + CN
Sbjct: 139 GAPAAYHGGLWNRSNMGEGMIIGVLDDGIAAGHPSFDAAGMGPPPARWKGRCDFNSSVCN 198
Query: 186 NKIIGARNFLNKS--------EP--PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAG 235
NK+IGAR+F + +P P+ HGTHT+STA GNFV GAN+ G GTAAG
Sbjct: 199 NKLIGARSFFESAKWKWRGVDDPVLPVYELAHGTHTSSTAGGNFVPGANVMGNGFGTAAG 258
Query: 236 MAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXX 295
MAP AHLA+Y+VC D GC + AA+D AV+EGVDVLSISLG
Sbjct: 259 MAPRAHLALYQVCSEDRGCDRDDILAAMDDAVDEGVDVLSISLGDDEAGDFAGDPVALGA 318
Query: 296 XXS-QKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETI 354
+ +G+ VS SAGN+GPN T++NEAPW+LTV AST R VA +LG +DGE +
Sbjct: 319 YTAIMRGVFVSSSAGNNGPNPLTVSNEAPWLLTVAASTTGRKFVATVKLGTGVEFDGEAL 378
Query: 355 FQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKD 414
+QP +FPS Q PL+ C E L V GK+V+C +GG +RKG + D
Sbjct: 379 YQPPNFPSTQWPLI---ADTRGDGTCSDEHLMKEHVAGKLVVCNQGGNLTGLRKGSYLHD 435
Query: 415 AGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIG 474
AG A M+L+ E +H+LP + Y +GE +KAY+ ST SPTA++++KGTV G
Sbjct: 436 AGAAGMVLIGPEFMGSMVQPKSHILPVAQIVYLSGEELKAYMKSTKSPTAALIYKGTVFG 495
Query: 475 KKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK---STFTMISG 531
+ PEVA FSSRGP+ + GILKPDI GPGV+I+A P + T + F ++SG
Sbjct: 496 DRKTPEVAPFSSRGPSRQNQGILKPDITGPGVNIIAGVPVTSGLATPPNPLAAKFDIMSG 555
Query: 532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGA 591
TSM+ PHLSGIAAL+K AHP WSPAAIKSA+MTTAD ++ +PI + A++F +GA
Sbjct: 556 TSMAAPHLSGIAALIKKAHPKWSPAAIKSAMMTTADTLDRRRRPITDQKGNNANMFGLGA 615
Query: 592 GHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDH--DVQCSKVSSIAEAELN 649
G +NP+KA +PGLVY+++ DYV +LCG Y+D ++ I+ V C ++ ++ + +LN
Sbjct: 616 GFINPTKAMNPGLVYDLTAQDYVPFLCGLGYSDHEVSSIIHPAPSVSCKQLPAVEQKDLN 675
Query: 650 YPSFSVKLGSSPQ--TYNRTVTNVG-QDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKA 706
YPS +V L P + +R VTNVG + + Y + +P V + V PD + F + NQ
Sbjct: 676 YPSITVFLDREPYVVSVSRAVTNVGPRGKAVYAAKVDMPATVLVTVTPDTLRFKKVNQVR 735
Query: 707 TFSVTFIRDQNSNASS---VQGYLSWVSATHTVRSPIAI 742
F+VTF R N +G L WVS H VRSPI +
Sbjct: 736 KFTVTF-RGANGGPMKGGVAEGQLRWVSPDHVVRSPIVV 773
|
|
| UNIPROTKB|Q7XPR9 OSJNBa0065O17.12 "Os04g0558900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 336/769 (43%), Positives = 460/769 (59%)
Query: 2 AAILISLVYILSFSPTIAVTSNGIENDANGLQTYIVHVRKP-KQEGNFSIKLDLDNWYRT 60
AA+L+ V S + T A + G +D Y+V VRKP + N + +
Sbjct: 18 AAVLLLAV---SLAATPAASHAG-HDDTGLHSNYLVIVRKPYAYDTNLYKNVSSWHASLV 73
Query: 61 FLPDNISKSI---DAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILE 117
+++K D SR++Y YRNV++GFAARLT EEV+ M FI A E +
Sbjct: 74 ASVCDMAKEALERDPSSVSRLIYSYRNVVNGFAARLTPEEVEEMSKNDWFIRADPEKTYQ 133
Query: 118 PQTTHSPNFLGLH---QNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWK 174
QTTH+P LGL + G W SN+G+G+IIG+LD GI GHPSF GM PPPAKW
Sbjct: 134 LQTTHTPQLLGLMGGARRGGVWNTSNMGEGIIIGILDDGIYAGHPSFDGAGMKPPPAKWS 193
Query: 175 GKCELEGANCNNKIIGARNFLNKS--------EP--PIDNDGHGTHTASTAAGNFVNGAN 224
G+C+ CNNK+IGAR++ + +P PI+ HGTHT+STAAG+FV GAN
Sbjct: 194 GRCDFNKTVCNNKLIGARSYFESAKWKWKGLRDPVLPINEGQHGTHTSSTAAGSFVPGAN 253
Query: 225 LFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP 284
+ G A GTA GMAP AH+A Y+VC + GC + AA+D A+E+GVD+LS+SLG
Sbjct: 254 VSGYAVGTAGGMAPRAHIAFYQVCYVEKGCDRDDILAAVDDALEDGVDILSLSLGDEQAG 313
Query: 285 XXXXX-XXXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQL 343
+ G+LVS + GN+GP ST+ NEAPW++TVGA T DR VA +L
Sbjct: 314 DFSDDPVSLGGYSAAMHGVLVSAAGGNTGPGPSTVVNEAPWVITVGAGTTDRRFVATVKL 373
Query: 344 GNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPET-LKSIDVKGKVVLCQRGGG 402
G+ + DGE++ +PKDF ++ PLV+ + C E+ L++++V GK+++C GG
Sbjct: 374 GSGVSLDGESLSEPKDFGAEMRPLVH----DVGDGMCTTESVLRAMNVTGKIIICDAGGD 429
Query: 403 TQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSP 462
+ K K V +G A MI++ +++ V HVLP V + + G++IKAYI ST SP
Sbjct: 430 VS-VAKAKLVLRSGAAGMIVIAPQVYGSVIVPRPHVLPTVQMPFMIGQKIKAYIRSTPSP 488
Query: 463 TASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNT 522
TA+ +FKGTV KS P A FSSRGPN S GILKPDIIGPGV+ILA P E+
Sbjct: 489 TANFIFKGTVFKAKS-PVAAPFSSRGPNRRSRGILKPDIIGPGVNILAGVPKIEDLALGA 547
Query: 523 KST---FTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNH 579
+ F + SGTSM+ PH+SG+AAL+K+AHP WSPAAIKSA+MTTAD + KPI +
Sbjct: 548 EEVMPKFDIKSGTSMAAPHISGVAALIKNAHPTWSPAAIKSAMMTTADYTDNLRKPITDV 607
Query: 580 HLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHD--VQC 637
PA +A+GAG+VN KA DPGLVY +S DY+ YLCG Y DQ++ I+ V+C
Sbjct: 608 DGAPATYYAIGAGYVNARKAIDPGLVYNLSSLDYIPYLCGLGYKDQKVNSIIHPGPAVEC 667
Query: 638 SKVSSIAEAELNYPSFSVKLGSSPQ--TYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPD 695
+K+ + + +LNYPS + L P + NR+ TNVG S Y + VP + + V P
Sbjct: 668 AKMPKVDQKDLNYPSITAVLDMEPYEVSINRSATNVGAATSTYAVEVDVPATLAVEVNPA 727
Query: 696 KISFTEKNQKATFSVTF-IRDQNSNASSVQGYLSWVSAT-HTVRSPIAI 742
K+ F N+ ++VT + AS+++G L WVS + VRSPI +
Sbjct: 728 KLEFRALNEVLNYTVTVKTASGKAPASTIEGQLKWVSGKKYVVRSPILV 776
|
|
| UNIPROTKB|Q0D3H9 Os07g0685900 "cDNA clone:001-131-E09, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
Identities = 331/766 (43%), Positives = 458/766 (59%)
Query: 1 MAAIL--ISLVYILSFSPTIAVTSNGIE-------NDANGLQTYIVHVRKPKQEGNFSIK 51
MA++L + L LS P + + G + G TYIV V P G+ +
Sbjct: 4 MASLLPILLLTAFLSSKPALCYINPGATPPQKIGTKSSGGRATYIVFVEPPPPLGHGDGE 63
Query: 52 LDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISAR 111
D W+ +FLP +S+ + R+V+ Y +SGFAARLT E+ A+ K GF+ A
Sbjct: 64 DDHCRWHESFLP--LSELAGSDDEPRLVHSYTEAVSGFAARLTGGELDAVSKKPGFVRAI 121
Query: 112 VENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPA 171
+ L+ TTH+P FLGL +++G W+DS GKGVI+GVLD GI HPSF D G+PPPPA
Sbjct: 122 PDRTLQLMTTHTPEFLGLRKDAGLWRDSGYGKGVIVGVLDTGIDSSHPSFDDRGVPPPPA 181
Query: 172 KWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANG 231
+WKG C A CNNK+IG ++F+ D GHGTHTASTAAGNFV+GA + G G
Sbjct: 182 RWKGSCRDTAARCNNKLIGVKSFIPGDNDTSDGVGHGTHTASTAAGNFVDGAAVNGLGVG 241
Query: 232 TAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSP-SLPXXXXXX 290
T AG+AP AH+A+Y+VC + GC ES + ID A+++GVDVLSISLGS +
Sbjct: 242 TVAGIAPGAHIAMYRVCTVE-GCTESALLGGIDEAIKDGVDVLSISLGSSFAADYDKDPL 300
Query: 291 XXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYD 350
KGI+V C+AGN+GP +TL+NEAPWM+TV AS++DR A T+LG+ D
Sbjct: 301 AIGAFSAVSKGIVVVCAAGNNGPAFATLSNEAPWMVTVAASSVDRRFSAPTRLGDGRVID 360
Query: 351 GETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGK 410
GE + Q + K PL Y A C E + D+KGK+VLC+ G +
Sbjct: 361 GEALDQASNSSGKAYPLSY---SKEQAGLC--EIADTGDIKGKIVLCKLEGSPPTVVD-- 413
Query: 411 DVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKG 470
++K G A ++L+N +L Y T+ ++ V V+ A G R+ Y S + P A+I FK
Sbjct: 414 NIKRGGAAGVVLINTDLLGYTTILRDYGSDVVQVTVADGARMIEYAGSRN-PVATITFKN 472
Query: 471 -TVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFS--EENITNTKSTFT 527
TV+G + AP +A FSSRGP+ + GILKPDI+ PG++ILAAWP S + +F
Sbjct: 473 RTVLGVRPAPTLAAFSSRGPSFLNVGILKPDIMAPGLNILAAWPSSVARTDAAAAPPSFN 532
Query: 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLF 587
+ISGTSM+ PH+SG+AAL+KS HPDWSPAAIKSAI+TT+D V+ G PI++ LF
Sbjct: 533 VISGTSMATPHVSGVAALVKSVHPDWSPAAIKSAILTTSDEVDNTGGPILDEQHNKTMLF 592
Query: 588 A---VGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIV--DHDVQ-CSKVS 641
GAGHVNP++A DPGLVY+I +Y +LC + + I+ + +Q C +
Sbjct: 593 GPFNTGAGHVNPTRAADPGLVYDIGVAEYAGFLC--TLVGEYVLPIIVRNSSLQSCRDLP 650
Query: 642 SIAEAELNYPSFSVKLGSSPQTYNRTVTNVGQDNSFYTHHI-IVPE-GVKIIVQPDKISF 699
+ ++ LNYPS +V+L +P T NRTVTNVG S YT ++ + E +K+ V P+ + F
Sbjct: 651 RVGQSHLNYPSITVELEKTPFTVNRTVTNVGPAESTYTANVTLAAETSLKLSVSPETLVF 710
Query: 700 TEKNQKATFSVTFIRDQNSNASSV---QGYLSWVSATHTVRSPIAI 742
++ +K TF+VT A +V +G L WVS H VRSP+ +
Sbjct: 711 SKAGEKKTFAVTVSGRFTKAAQAVAVLEGSLRWVSPEHVVRSPVVL 756
|
|
| TAIR|locus:2020245 SDD1 "AT1G04110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 262/596 (43%), Positives = 371/596 (62%)
Query: 182 ANCNNKIIGARNFL------NKSE--PPI--------DNDGHGTHTASTAAGNFVNGANL 225
++CN K+IGAR F+ N E P + D+ GHGTHTAST G+ V+ AN+
Sbjct: 181 SSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANV 240
Query: 226 FGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPX 285
G G A GMAP AH+A+YKVC + GC S + AAID A+++ VDVLS+SLG +P
Sbjct: 241 LGNGAGVARGMAPGAHIAVYKVCWFN-GCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPL 299
Query: 286 XXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGN 345
++GI V C+AGN+GP S++AN APW+ T+GA T+DR A+ +L N
Sbjct: 300 YDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLAN 359
Query: 346 QETYDGETIFQPKDFPS--KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGT 403
+ GE+++ K + +++ ++Y + + FCL +L +++GK+V+C RG
Sbjct: 360 GKLLYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRGVNG 419
Query: 404 QRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPT 463
R KG+ VK+AGG AMIL N E+ D H+LPA + Y +KAY+N+T P
Sbjct: 420 -RSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPK 478
Query: 464 ASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNT- 522
A I+F GTVIG+ APEVA FS+RGP+ A+P ILKPD+I PGV+I+AAWP +N+ T
Sbjct: 479 ARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWP---QNLGPTG 535
Query: 523 ------KSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPI 576
+ FT++SGTSMSCPH+SGI AL++SA+P+WSPAAIKSA+MTTAD+ + +GK I
Sbjct: 536 LPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAI 595
Query: 577 MNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQ 636
+ + PA +FA+GAGHVNP KA +PGLVY I DY+ YLC +T I I +V
Sbjct: 596 KDGNK-PAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVS 654
Query: 637 CSKVSSIAEA-ELNYPSFSV--KLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQ 693
C+ + LNYPS +V K G + + R VTNVG NS Y+ ++ PEG+K+IV
Sbjct: 655 CNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVN 714
Query: 694 PDKISFTEKNQKATFSVTFI-RDQNSN---ASSVQGYLSWVSATHT---VRSPIAI 742
P ++ F +Q ++ V F+ + +N AS QG L+WV++ + VRSPI++
Sbjct: 715 PKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1230 (438.0 bits), Expect = 6.4e-153, Sum P(2) = 6.4e-153
Identities = 266/583 (45%), Positives = 360/583 (61%)
Query: 184 CNNKIIGARNFLN-------------KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQAN 230
CN K+IGAR F +S P D+DGHGTHT+STAAG+ V GA+L G A+
Sbjct: 176 CNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYAS 235
Query: 231 GTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXX 290
GTA GMAP A +A+YKVC GC S + AAID A+ + V+VLS+SLG
Sbjct: 236 GTARGMAPRARVAVYKVCWLG-GCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGV 294
Query: 291 XXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYD 350
++GILVSCSAGN+GP+SS+L+N APW+ TVGA T+DR AL LGN + +
Sbjct: 295 AIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFT 354
Query: 351 GETIFQPKDFPSKQLPLVYPG-VKNSSAA-FCLPETLKSIDVKGKVVLCQRGGGTQRIRK 408
G ++F+ + P K LP +Y G N++ C+ TL VKGK+V+C RG R++K
Sbjct: 355 GVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINA-RVQK 413
Query: 409 GKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVF 468
G VK AGG MIL N VAD H+LPA V AG+ I+ Y+ + +PTASI
Sbjct: 414 GDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISI 473
Query: 469 KGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENI----TNTKS 524
GTV+G K +P VA FSSRGPN+ +P ILKPD+I PGV+ILAAW + + +
Sbjct: 474 LGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRV 533
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHL-LP 583
F +ISGTSMSCPH+SG+AALLKS HP+WSPAAI+SA+MTTA +GKP+++ P
Sbjct: 534 EFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKP 593
Query: 584 ADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSI 643
+ F GAGHV+P+ A +PGL+Y+++ +DY+ +LC NYT QI + + C S
Sbjct: 594 STPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSY 653
Query: 644 AEAELNYPSFSVKL-GSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEK 702
+ A+LNYPSF+V + G Y RTVT+VG ++ GVKI V+P ++F E
Sbjct: 654 SVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEA 713
Query: 703 NQKATFSVTFIRDQNS-NASSVQGYLSWVSATHTVRSPIAIGF 744
N+K +++VTF D + + S+ G + W H V SP+AI +
Sbjct: 714 NEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
|
|
| TAIR|locus:2025457 SBTI1.1 "AT1G01900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
Identities = 318/752 (42%), Positives = 451/752 (59%)
Query: 27 NDANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVI 86
N ++ QTY++H + I L N +T +NI+ D + Y Y N +
Sbjct: 36 NVSSRKQTYVIHTVTTSTK---HIVTSLFNSLQT---ENIND--DDFSLPEIHYIYENAM 87
Query: 87 SGFAARLTAEEVKAMETKSGFISARVENILEPQTTHSPNFLGLHQNSGFWKDSNLGKGVI 146
SGF+A LT +++ ++ GFISA + +L TT+S FLGL G W +++L VI
Sbjct: 88 SGFSATLTDDQLDTVKNTKGFISAYPDELLSLHTTYSHEFLGLEFGIGLWNETSLSSDVI 147
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCE----LEGANCNNKIIGARNFLNKSEPPI 202
IG++D GI+P H SF D M P P++W+G C+ + CN KIIGA F E +
Sbjct: 148 IGLVDTGISPEHVSFRDTHMTPVPSRWRGSCDEGTNFSSSECNKKIIGASAFYKGYESIV 207
Query: 203 -------------DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
D GHGTHTASTAAG+ V AN FGQA G A+GM + +A YK C
Sbjct: 208 GKINETTDFRSTRDAQGHGTHTASTAAGDIVPKANYFGQAKGLASGMRFTSRIAAYKACW 267
Query: 250 TDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAG 309
LGC + V AAID A+ +GVDV+S+SLG S P QK I VSCSAG
Sbjct: 268 A-LGCASTDVIAAIDRAILDGVDVISLSLGGSSRPFYVDPIAIAGFGAMQKNIFVSCSAG 326
Query: 310 NSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVY 369
NSGP +ST++N APW++TV AS DR+ A+ ++GN+++ G ++++ K K LPL +
Sbjct: 327 NSGPTASTVSNGAPWLMTVAASYTDRTFPAIVRIGNRKSLVGSSLYKGKSL--KNLPLAF 384
Query: 370 PGV--KNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDEL 427
+ S A FC+ ++LK V+GK+V+C RG + R KG++VK +GGAAM+L++ E
Sbjct: 385 NRTAGEESGAVFCIRDSLKRELVEGKIVICLRGA-SGRTAKGEEVKRSGGAAMLLVSTEA 443
Query: 428 FDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSR 487
+AD HVLPAV + ++ G+ + Y+ ++ TAS+ F+GT G +AP VA FSSR
Sbjct: 444 EGEELLADPHVLPAVSLGFSDGKTLLNYLAGAANATASVRFRGTAYGA-TAPMVAAFSSR 502
Query: 488 GPNTASPGILKPDIIGPGVSILAAW-PFSEENITNT---KSTFTMISGTSMSCPHLSGIA 543
GP+ A P I KPDI PG++ILA W PFS ++ + + F +ISGTSM+CPH+SGIA
Sbjct: 503 GPSVAGPEIAKPDIAAPGLNILAGWSPFSSPSLLRSDPRRVQFNIISGTSMACPHISGIA 562
Query: 544 ALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPAD----LFAVGAGHVNPSKA 599
AL+KS H DWSPA IKSAIMTTA I + +PI + A+ FA GAG+V+P++A
Sbjct: 563 ALIKSVHGDWSPAMIKSAIMTTARITDNRNRPIGDRGAAGAESAATAFAFGAGNVDPTRA 622
Query: 600 NDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQC-SKVSSIAEAELNYPSFSVKL- 657
DPGLVY+ S DY+ YLC NYT ++I + C S ++ +LNYPSF+V L
Sbjct: 623 VDPGLVYDTSTVDYLNYLCSLNYTSERILLFSGTNYTCASNAVVLSPGDLNYPSFAVNLV 682
Query: 658 -GSSPQT--YNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIR 714
G++ +T Y RTVTNVG Y H+ P+GVK+ V+P + F + ++ +++VT+
Sbjct: 683 NGANLKTVRYKRTVTNVGSPTCEYMVHVEEPKGVKVRVEPKVLKFQKARERLSYTVTYDA 742
Query: 715 DQNSNASSVQ-GYLSWVSATHTVRSPIAIGFE 745
+ + N+SS G L W+ + VRSPIA+ +E
Sbjct: 743 EASRNSSSSSFGVLVWICDKYNVRSPIAVTWE 774
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 3.4e-143, Sum P(2) = 3.4e-143
Identities = 264/587 (44%), Positives = 356/587 (60%)
Query: 184 CNNKIIGARNFLN--------------KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQA 229
CN K+IGAR+F +S P D DGHGTHT++TAAG+ V A+ G A
Sbjct: 171 CNKKLIGARSFSKGFQMASGGGFSSKRESVSPRDVDGHGTHTSTTAAGSAVRNASFLGYA 230
Query: 230 NGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXX 289
GTA GMA A +A YKVC + GC S + AA+D A+ +GVDVLS+SLG S P
Sbjct: 231 AGTARGMATRARVATYKVCWST-GCFGSDILAAMDRAILDGVDVLSLSLGGGSAPYYRDT 289
Query: 290 XXXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETY 349
++G+ VSCSAGNSGP +++AN APW++TVGA T+DR A LGN +
Sbjct: 290 IAIGAFSAMERGVFVSCSAGNSGPTRASVANVAPWVMTVGAGTLDRDFPAFANLGNGKRL 349
Query: 350 DGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKG 409
G +++ +K L LVY +SS+ CLP +L S V+GK+V+C RG R+ KG
Sbjct: 350 TGVSLYSGVGMGTKPLELVYNKGNSSSSNLCLPGSLDSSIVRGKIVVCDRGVNA-RVEKG 408
Query: 410 KDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFK 469
V+DAGG MI+ N VAD+H+LPA+ V G+ ++ Y+ S S PTA +VFK
Sbjct: 409 AVVRDAGGLGMIMANTAASGEELVADSHLLPAIAVGKKTGDLLREYVKSDSKPTALLVFK 468
Query: 470 GTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAW-----PFSEENITNTKS 524
GTV+ K +P VA FSSRGPNT +P ILKPD+IGPGV+ILA W P + + ++
Sbjct: 469 GTVLDVKPSPVVAAFSSRGPNTVTPEILKPDVIGPGVNILAGWSDAIGPTGLDK-DSRRT 527
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPA 584
F ++SGTSMSCPH+SG+A LLK+AHP+WSP+AIKSA+MTTA +++ P+ H
Sbjct: 528 QFNIMSGTSMSCPHISGLAGLLKAAHPEWSPSAIKSALMTTAYVLDNTNAPL--HDAADN 585
Query: 585 DL---FAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDH-DVQCSKV 640
L +A G+GHV+P KA PGLVY+IS ++Y+R+LC +YT I IV V CSK
Sbjct: 586 SLSNPYAHGSGHVDPQKALSPGLVYDISTEEYIRFLCSLDYTVDHIVAIVKRPSVNCSKK 645
Query: 641 SSIAEAELNYPSFSVKLGSSPQT-YNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISF 699
S +LNYPSFSV G Y R VTNVG +S Y + V I V+P K+SF
Sbjct: 646 FS-DPGQLNYPSFSVLFGGKRVVRYTREVTNVGAASSVYKVTVNGAPSVGISVKPSKLSF 704
Query: 700 TEKNQKATFSVTFIRDQN-SNASSVQ-GYLSWVSATHTVRSPIAIGF 744
+K ++VTF+ + S + + G ++W + H VRSP+A +
Sbjct: 705 KSVGEKKRYTVTFVSKKGVSMTNKAEFGSITWSNPQHEVRSPVAFSW 751
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O64495 | SDD1_ARATH | 3, ., 4, ., 2, 1, ., - | 0.4331 | 0.9395 | 0.9032 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 745 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-96 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 2e-35 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 3e-34 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 8e-31 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 7e-28 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 7e-26 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-22 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-22 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-21 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-21 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-18 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-17 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 6e-17 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-17 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-16 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 7e-15 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-14 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-14 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 7e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-13 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-13 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 4e-13 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 9e-13 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 9e-13 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-12 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 3e-12 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 6e-12 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 7e-11 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 3e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-10 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 3e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-08 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 3e-08 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 3e-08 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 5e-08 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 5e-08 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 6e-08 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 2e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 3e-07 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 6e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-06 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 4e-06 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 4e-06 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 8e-06 | |
| cd07491 | 247 | cd07491, Peptidases_S8_7, Peptidase S8 family doma | 4e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 6e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 7e-05 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 7e-05 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 1e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 1e-04 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 1e-04 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 2e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-04 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 2e-04 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 2e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 3e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 5e-04 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 0.001 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 0.002 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 0.003 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 300 bits (771), Expect = 2e-96
Identities = 114/236 (48%), Positives = 142/236 (60%), Gaps = 18/236 (7%)
Query: 116 LEPQTTHSPNFLGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKW 173
+ TT SP+FLGL +N G+G+IIGVLD GI P HPSF+D G P P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 174 KGKCEL----EGANCNNKIIGARNFL------------NKSEPPIDNDGHGTHTASTAAG 217
G C +CNNK+IGAR F + P D DGHGTHTASTAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 218 NFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSIS 277
N V A++ G A GTA+G+AP A +A+YKVC D GC S + AAID A+ +GVDV+S S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 278 LGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTI 333
+G S + D +A A A + GI V+ SAGNSGP +ST+ N APW+ TV AST+
Sbjct: 181 IGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-35
Identities = 59/124 (47%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 343 LGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGG 402
LGN +T G++++ L + A+ CLP +L VKGK+VLC RGG
Sbjct: 4 LGNGKTIVGQSLYPGNLKTYP-LVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGN 62
Query: 403 TQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSP 462
T R+ KG VK AGGA MIL ND VAD HVLPAV+V Y G I +YINSTS+P
Sbjct: 63 TSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNP 122
Query: 463 TASI 466
TA+I
Sbjct: 123 TATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 3e-34
Identities = 47/74 (63%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 495 GILKPDIIGPGVSILAAW-PFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDW 553
LKPDI PGV ILAAW P + F ISGTSM+ PH++G+AALLKSAHPDW
Sbjct: 234 STLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDW 293
Query: 554 SPAAIKSAIMTTAD 567
SPAAIKSA+MTTA
Sbjct: 294 SPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-31
Identities = 70/194 (36%), Positives = 94/194 (48%), Gaps = 13/194 (6%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
GKGV + V+D GI HP G P K KG + + +
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPND--KVKGGYDFVDDDYDPMDTRPYPSPLGDASA 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D GHGTH A AGN G GT G+AP A L YKV ++ A
Sbjct: 59 GDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIA 110
Query: 262 AIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN- 320
AI+ AV++G+DV+++SLGS S+ D A A A + G++V +AGNSGP T+ +
Sbjct: 111 AIEQAVDDGMDVINLSLGS-SVNGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSP 169
Query: 321 -EAPWMLTVGASTI 333
AP +TVGAST+
Sbjct: 170 ATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 7e-28
Identities = 65/177 (36%), Positives = 85/177 (48%), Gaps = 23/177 (12%)
Query: 429 DYGTVA-DNHVLPAVYVSYAAGERIKAYINST-----SSPTASIVFKGTVIGKKSAPEVA 482
D +A +N V V V AAG T ++P+A V TV A V
Sbjct: 136 DPDAIAINNAVKAGVVVVAAAGN--SGPAPYTIGSPATAPSAITVGASTVADVAEADTVG 193
Query: 483 VFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGI 542
SSRGP S +KPDI+ PGV I++ P S + +SGTSM+ PH++G
Sbjct: 194 PSSSRGP-PTSDSAIKPDIVAPGVDIMSTAPGSGTG-------YARMSGTSMAAPHVAGA 245
Query: 543 AALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
AALLK AHPDWSPA IK+A+M TA + + GAG V+ +A
Sbjct: 246 AALLKQAHPDWSPAQIKAALMNTAKPLYDSDGV-------VYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
GKG+ + VLD GI HP F + N +N P
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRI--------------------IRFADFVNTVNGRTTP 40
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D++GHGTH A AG+ +NG G+AP A+L KV + ES + A
Sbjct: 41 YDDNGHGTHVAGIIAGSGR-------ASNGKYKGVAPGANLVGVKVLDDSGSGSESDIIA 93
Query: 262 AIDAAVEE----GVDVLSISLGSP-SLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS 316
ID VE + V+++SLG+P + D + A GI+V +AGNSGP
Sbjct: 94 GIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPG 153
Query: 317 TL---ANEAPWMLTVGAST 332
T+ N +P ++TVGA
Sbjct: 154 TITSPGN-SPKVITVGAVD 171
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 1e-22
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 34/189 (17%)
Query: 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPID 203
GV + VLD G+ HP + A+W N + D
Sbjct: 1 GVTVAVLDTGVDADHPDLAGR-----VAQWA--------------DFDENRRISATEVFD 41
Query: 204 NDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAI 263
GHGTH + T G G A G G+AP A L KV D G S + A +
Sbjct: 42 AGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVL-DDGGGSLSQIIAGM 91
Query: 264 DAAVEEGVDVLSISLG--SPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANE 321
+ AVE+ DV+S+SLG S +A+ ++Q G L SAGN G +S
Sbjct: 92 EWAVEKDADVVSMSLGGTYYSEDPLEEAVEA---LSNQTGALFVVSAGNEGHGTSGSPGS 148
Query: 322 APWMLTVGA 330
A L+VGA
Sbjct: 149 AYAALSVGA 157
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 4e-22
Identities = 55/194 (28%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDN 204
V + V+D G+ P HP + N P D
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGG-----------------NDDDDNENGPTDPDDG 43
Query: 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAID 264
+GHGTH A A + NG G+AP A L KV + D S + AAID
Sbjct: 44 NGHGTHVAGIIAAS---------ANNGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAID 94
Query: 265 AAVEE-GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANE-- 321
A + G DV+++SLG P P + + ++ G+LV +AGN GP+ T
Sbjct: 95 YAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPA 154
Query: 322 -APWMLTVGASTID 334
+P ++ VGA D
Sbjct: 155 ASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 481 VAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLS 540
++ FSSRGP T G +KPD++ PG +I++ S + +SGTSM+ PH+S
Sbjct: 180 ISYFSSRGP-TGD-GRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVS 237
Query: 541 GIAALLKSAHPDWSPAAIKSAIMTTAD 567
G ALL A+P +P +K + TA
Sbjct: 238 GAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 61/208 (29%), Positives = 85/208 (40%), Gaps = 42/208 (20%)
Query: 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP-PI 202
GV + V+D GI HP I+G NF
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL-----------------------NIVGGANFTGDDNNDYQ 37
Query: 203 DNDGHGTHTASTAAGNFVNGANLFGQANGTAA-GMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A A NG G+AP A L KV D S + A
Sbjct: 38 DGNGHGTHVAGIIAA----------LDNGVGVVGVAPEADLYAVKVLNDDGSGTYSDIIA 87
Query: 262 AIDAAVEEGVDVLSISLGSPS-LPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN 320
I+ A+E G+D++++SLG PS P +A+ A GILV +AGNSG S+
Sbjct: 88 GIEWAIENGMDIINMSLGGPSDSPALREAIKKAY----AAGILVVAAAGNSGNGDSSYDY 143
Query: 321 EA--PWMLTVGASTIDRSIVALTQLGNQ 346
A P ++ VGA + + + + G +
Sbjct: 144 PAKYPSVIAVGAVDSNNNRASFSSTGPE 171
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-18
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 25/216 (11%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANC--------NNKIIGARN 193
G+G+++ V+D G+ P H +F AK+ + E + N K+ A N
Sbjct: 10 GEGMVVAVIDSGVDPTHDAFR--LDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYN 67
Query: 194 FLNKSEPPIDND---GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKV--C 248
+ + ++ +D D HG H A AGN N G+AP A L KV
Sbjct: 68 YADNNDDILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSN 122
Query: 249 ETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFT-ASQKGILVSCS 307
+ AI+ AV+ G DV+++SLGS + D A A + G++V +
Sbjct: 123 PEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVA 182
Query: 308 AGNSG----PNSSTLANEAPWMLTVGASTIDRSIVA 339
AGN G S LA P TVG+ ++
Sbjct: 183 AGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLT 218
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + V+D G+ P HP K + +F++
Sbjct: 27 GSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDNDSDA 64
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD-LGCPESIVN 260
+D++GHGTH A A NG G AG+AP A + KV + + G I N
Sbjct: 65 MDDNGHGTHVAGIIAAATNNG---TG-----VAGVAPKAKIMPVKVLDANGSGSLADIAN 116
Query: 261 AAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN 320
I A ++G V+++SLG + A+ A A KG++V +AGN G +S +
Sbjct: 117 -GIRYAADKGAKVINLSLGG---GLGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPA 172
Query: 321 EAPWMLTVGASTIDR 335
P + V A+ D
Sbjct: 173 AYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 57/204 (27%), Positives = 78/204 (38%), Gaps = 39/204 (19%)
Query: 146 IIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP---I 202
+GVLD GI HP S G +F++ P
Sbjct: 1 TVGVLDTGIDVNHPDLSG-----------------RYIGLAYRNG-YDFVDNDPDPTPDD 42
Query: 203 DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAA 262
DN+GHGTH A A NG+ G+AP A L KV G +S + A
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGS--------GGVGVAPNAKLESVKVLPGSGG-TDSELAGA 93
Query: 263 IDAAVE--EGVDVLSISLGSPSLP---FFADAMATAAFTASQKGILVSCSAGNSGPNSST 317
I+ A E + V+++SLG P + + A A KG L +AGN G +
Sbjct: 94 IEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADN 153
Query: 318 LANEAP---WM-LTVGASTIDRSI 337
P +TVGA T + +I
Sbjct: 154 NPVSDPASANNIITVGAVTENGTI 177
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-17
Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 141 LGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP 200
GKGV + V+D GI HP+ G P K G + G + + N +
Sbjct: 11 TGKGVKVAVVDTGIDYTHPALG--GCFGPGCKVAGGYDFVGDDYDGT-----NPPVPDDD 63
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
P+D GHGTH A A N N +G G+AP A L Y+V E +
Sbjct: 64 PMDCQGHGTHVAGIIAAN----PNAYG-----FTGVAPEATLGAYRVFGCSGSTTEDTII 114
Query: 261 AAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSG 312
AA A E+G DV++ SLG PS + D A A G++V+ +AGN G
Sbjct: 115 AAFLRAYEDGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 458 STSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE 517
++++P+ S G ++ VA FSSRGP G +KPD++ PG IL+A
Sbjct: 179 ASNNPSVSNGEGGLGQ-SDNSDTVASFSSRGP--TYDGRIKPDLVAPGTGILSARSGGGG 235
Query: 518 NITNTKSTFTMISGTSMSCPHLSGIAALL----------KSAHPDWSPAAIKSAIMTTAD 567
+ S +T SGTSM+ P ++G AALL +P S A +K+ ++ +A
Sbjct: 236 IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+A FS+ G KPDI+ PG +IL++ P + SGTSM+ P +
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGP------GGDLGGYDSHSGTSMAAPLV 226
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEG 573
+G AALL SA+P +P +++ ++TTA + G
Sbjct: 227 AGAAALLLSANPSLTPETLRALLVTTATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 31/204 (15%)
Query: 143 KGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGA---NCNNKII----GARNFL 195
V++ V+D G+ HP D W E+ G + N + G NF+
Sbjct: 2 GDVVVAVIDTGVDYNHPDLKD-------NMWVNPGEIPGNGIDDDGNGYVDDIYGW-NFV 53
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
N P+D++GHGTH A NG + G A + PL L G
Sbjct: 54 NNDNDPMDDNGHGTHVAGIIGAVGNNGIGIAGVAWNVK--IMPLKFLG-----ADGSGTT 106
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
+ AID AV+ G +++ S G + A+ A A GIL +AGN G N+
Sbjct: 107 SDAI-KAIDYAVDMGAKIINNSWGGGG---PSQALRDAIARAIDAGILFVAAAGNDGTNN 162
Query: 316 STL-----ANEAPWMLTVGASTID 334
+ + +++V A+ +
Sbjct: 163 DKTPTYPASYDLDNIISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 477 SAPEVAVFSSRGPNTASPG---------ILKPDIIGPGVSILAAWPFSEENITNTKSTFT 527
E A FSS G + AS KPD+ PGV + +A N +T
Sbjct: 160 RDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSA-----RQGANGDGQYT 214
Query: 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567
+SGTSM+ PH++G+AALL +AHPD SP IK A+ TA
Sbjct: 215 RLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FSS GP LKPD+ PG +IL+ +P + ++SGTSM+ P+++G A
Sbjct: 191 FSSWGPTNE--LYLKPDVAAPGGNILSTYP-------LAGGGYAVLSGTSMATPYVAGAA 241
Query: 544 ALLKSA-HPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFA-----VGAGHVNPS 597
ALL A H SPA ++ + +TA KP+ A GAG VN
Sbjct: 242 ALLIQARHGKLSPAELRDLLASTA-------KPLPWSDGTSALPDLAPVAQQGAGLVNAY 294
Query: 598 KA 599
KA
Sbjct: 295 KA 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 47/212 (22%), Positives = 64/212 (30%), Gaps = 52/212 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV +GV+D GI HP F+
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAGR------VSEAS-------------YYVAVNDAGYASN 42
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVC-ETDLGCPESIVN 260
D D HGTH A A G G+AP A L + ++ +
Sbjct: 43 GDGDSHGTHVAGVIAAARDGGG---------MHGVAPDATLYSARASASAGSTFSDADIA 93
Query: 261 AAIDAAVEEGVDVLSISLGSPSLPFFA-------------DAMATAAFTASQKGILVSCS 307
AA D GV +++ S G +A A A+ G+ V +
Sbjct: 94 AAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVF-A 152
Query: 308 AGNSG-PNSSTLANEAPW--------MLTVGA 330
AGN G N S A P+ + V A
Sbjct: 153 AGNDGQANPSLAAAALPYLEPELEGGWIAVVA 184
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 31/204 (15%)
Query: 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDN 204
V++ ++D G+ HP S K++ NF++ ++P D
Sbjct: 1 VVVAIIDTGVDLNHPDLSG---------------------KPKLVPGWNFVSNNDPTSDI 39
Query: 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAID 264
DGHGT A AA NG AG+AP A L ++ ++ S + AI
Sbjct: 40 DGHGTACAGVAAAVGNNGLG--------VAGVAPGAKLMPVRIADSLGYAYWSDIAQAIT 91
Query: 265 AAVEEGVDVLSISLGSPSLPFFADAMATAAFTA--SQKGILVSCSAGNSGPNSSTLANEA 322
A + G DV+S S G + A T + KG +V +AGNSG + S+
Sbjct: 92 WAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAAN 151
Query: 323 PWMLTVGASTIDRSIVALTQLGNQ 346
P ++ V A+ + + + + GN
Sbjct: 152 PSVIAVAATDSNDARASYSNYGNY 175
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 7e-14
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S +A FS+ G T D+ PGV IL+ P + +SGTSM+
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSP---------GGGYGYMSGTSMAT 228
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567
PH++G AALL S +P+ + A IK AI+++AD
Sbjct: 229 PHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 17/86 (19%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
A FSS GP ++ PGV IL+ +P + + +SGTSM+ PH+
Sbjct: 161 NRASFSSTGPE--------VELAAPGVDILSTYPNN---------DYAYLSGTSMATPHV 203
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTT 565
+G+AAL+ S P+ + A ++ A+ T
Sbjct: 204 AGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 46/226 (20%)
Query: 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPID 203
G+ I V+D G H +F+ + + +K N +I+G +F++ S
Sbjct: 1 GITIAVIDAGFPKVHEAFAFKHL------FK----------NLRILGEYDFVDNSNNTNY 44
Query: 204 NDG-HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLA--HLAIYKVCETDLGCPESIVN 260
D HGT ST AG G G AP A +LA + ++ E
Sbjct: 45 TDDDHGTAVLSTMAGY----------TPGVMVGTAPNASYYLARTEDVASETPVEEDNWV 94
Query: 261 AAIDAAVEEGVDVLSISLG-----SPSLPFFADAM-------ATAAFTASQKGILVSCSA 308
AA + A GVD++S SLG +P+ + M + AA A+ KG+LV SA
Sbjct: 95 AAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSA 154
Query: 309 GNSGPNSS---TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDG 351
GN G +A +L+VGA + + + + +G T DG
Sbjct: 155 GNEGSTQWKGIGAPADAENVLSVGAVDANGNKASFSSIGP--TADG 198
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI PGV IL+AW S+ + +SGTSM+ PH++G+AA L S PD SPA +K
Sbjct: 194 DIFAPGVDILSAWIGSD-------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVK 246
Query: 560 SAIMTTA 566
+ ++ A
Sbjct: 247 ARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-13
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 357 PKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAG 416
P D K LV G+ PE + DVKGK+ L QRG T + K + K AG
Sbjct: 20 PTDLLGKTYELVDAGLGT-------PEDFEGKDVKGKIALIQRGEIT-FVEKIANAKAAG 71
Query: 417 GAAMILMN--DELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIG 474
+I+ N D L GT+ + +P V++S GE +KA + S + + F
Sbjct: 72 AVGVIIYNNVDGLI-PGTLGEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE- 125
Query: 475 KKSAPEVAVFSSRGP 489
K + P++A FSSRGP
Sbjct: 126 KATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 54/198 (27%), Positives = 72/198 (36%), Gaps = 29/198 (14%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
GKG I+GV D G+ H F D + KI+ + S+
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLF------------HRKIVRYDSL---SDTK 50
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGC-PESIVN 260
D DGHGTH A AG + + G+AP A L + +T +N
Sbjct: 51 DDVDGHGTHVAGIIAGKGND-----SSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLN 105
Query: 261 AAIDAAVEEGVDVLSISLGSPSLPFF---ADAMATAAFTASQKGILVSCSAGNSGPNSST 317
+ G + S S GSP + A A A+ IL SAGN G + S
Sbjct: 106 KLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNN--PDILFVFSAGNDGNDGSN 163
Query: 318 LANEAPW---MLTVGAST 332
+LTVGAS
Sbjct: 164 TIGSPATAKNVLTVGASN 181
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-13
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 11/71 (15%)
Query: 481 VAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLS 540
+A FSSRGP+T +KPDI PGV+I +A P + SGTSM+ PH++
Sbjct: 187 LADFSSRGPSTYGR--IKPDISAPGVNIRSAVP---------GGGYGSSSGTSMAAPHVA 235
Query: 541 GIAALLKSAHP 551
G+AALL SA+P
Sbjct: 236 GVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 64/262 (24%), Positives = 89/262 (33%), Gaps = 67/262 (25%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI HP+F + I ++F+ E
Sbjct: 7 GAGVRVAVLDTGIDLTHPAF-----------------------AGRDITTKSFVG-GEDV 42
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D GHGTH A T G V G G+A A +A+ D G + + A
Sbjct: 43 QDGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGKVLGDGGGGDGGILA 93
Query: 262 AIDAAVEEGVDVLSISLGSPSLPFFADAMAT-------------------------AAFT 296
I AV G DV+S+SLG+ AA
Sbjct: 94 GIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQA 153
Query: 297 ASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQ 356
A +G L+ +AGN S A P VG S + + +G
Sbjct: 154 ALARGTLIVAAAGN---ESQRPAGIPP----VGNPAACPSAMGVAAVGALG--RTGNFSA 204
Query: 357 PKDFPSKQLPLVYPGVKNSSAA 378
+F + ++ + PGV SAA
Sbjct: 205 VANFSNGEVDIAAPGVDIVSAA 226
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 493 SPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPD 552
S G DI PG IL++ T + +SGTSM+ P ++G+AALL SA+PD
Sbjct: 176 SNGGAGVDIAAPGGDILSS-------PTTGGGGYATLSGTSMAAPIVAGVAALLLSANPD 228
Query: 553 WSPAAIKSAIMTT 565
+PA +K+A+++T
Sbjct: 229 LTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 55/207 (26%), Positives = 81/207 (39%), Gaps = 50/207 (24%)
Query: 138 DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNK 197
DS+ G GV + VLD GI H F A W GA+
Sbjct: 20 DSSTGSGVDVYVLDTGIRTTHVEFGGR------AIW-------GAD-----------FVG 55
Query: 198 SEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPES 257
+P D +GHGTH A T G G+A A+L KV + + S
Sbjct: 56 GDPDSDCNGHGTHVAGTVG--------------GKTYGVAKKANLVAVKVLDCNGSGTLS 101
Query: 258 IVNAAIDAAVEEGVD-----VLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSG 312
+ A ++ + V ++SLG + A+ A A G++V +AGNS
Sbjct: 102 GIIAGLEWVANDATKRGKPAVANMSLGGG----ASTALDAAVAAAVNAGVVVVVAAGNSN 157
Query: 313 PNSSTL--ANEAPWMLTVGASTIDRSI 337
++ A+ AP +TVGA+ D +
Sbjct: 158 QDACNYSPAS-APEAITVGATDSDDAR 183
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-12
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMIL 422
PLVY G A C PE L DVKGK+VL +RGG + + K ++ + AG A +I+
Sbjct: 6 GTGPLVYVG-NGDDAGGCCPEDLADSDVKGKIVLVRRGGCS-FVEKAENAQRAGAAGVII 63
Query: 423 MNDELFDYGTV---ADNHVLPAVYVSYAAGERI 452
N++ G + +P V++SY GE +
Sbjct: 64 YNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
A FSS GP + G LKPD++ G I + N T +GTS SCP +
Sbjct: 185 NKASFSSIGPT--ADGRLKPDVMALGTGI---------YVINGDGNITYANGTSFSCPLI 233
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTAD 567
+G+ A L AHP+W+ IK AI+ +A
Sbjct: 234 AGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 49/181 (27%), Positives = 69/181 (38%), Gaps = 39/181 (21%)
Query: 145 VIIGVLDMGITPGHPSFSDEGMP-----PPPAKWKGKCELEGANCNNKIIGARNFLNKSE 199
V + V+D GI P HP + P + GK E + N+ +
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIV----------- 50
Query: 200 PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIV 259
D GHGT A A ANG G+AP + Y+V + S +
Sbjct: 51 ---DKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRVFGSCGSAESSWI 95
Query: 260 NAAIDAAVEEGVDVLSISLGS------PSLPFFA--DAMATAAFTASQKGILVSCSAGNS 311
AI A ++GVDV+++SLG +A A A KG +V +AGN
Sbjct: 96 IKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGND 155
Query: 312 G 312
G
Sbjct: 156 G 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 43/220 (19%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL---NKS 198
G G+++ +D G+ HP+ + K++G N+ +
Sbjct: 1 GTGIVVANIDTGVDWTHPALKN--------KYRG-------WGGGSADHDYNWFDPVGNT 45
Query: 199 EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESI 258
P D++GHGTHT T GN +G + G+AP A + + + G
Sbjct: 46 PLPYDDNGHGTHTMGTMVGNDGDGQQI---------GVAPGARWIACRALDRNGGNDADY 96
Query: 259 VNAA-----------IDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCS 307
+ A A + DV++ S G PS A AA+ A+ GI +
Sbjct: 97 LRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWRAA--GIFPVFA 154
Query: 308 AGNSGPNSSTLANEA---PWMLTVGASTIDRSIVALTQLG 344
AGN GP STL P VGA+ + + + G
Sbjct: 155 AGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSSRG 194
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 481 VAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLS 540
+A+FS RGP G +KPDI PGV+IL A P +T SGTS++ ++
Sbjct: 359 IAIFSGRGPTRD--GRIKPDIAAPGVNILTASP---------GGGYTTRSGTSVAAAIVA 407
Query: 541 GIAALL 546
G ALL
Sbjct: 408 GACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 24/137 (17%)
Query: 471 TVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530
+ + +++ FSS GP T LKPDI PG +I + +T+ +S
Sbjct: 224 KKVPNPNGGQMSGFSSWGP-TPD-LDLKPDITAPGGNIYSTVN---------DNTYGYMS 272
Query: 531 GTSMSCPHLSGIAALLKSA----HPDWSPA----AIKSAIMTTADIVNLEGKPIMNHHLL 582
GTSM+ PH++G +AL+K +P S +K+ +M TA
Sbjct: 273 GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPL-----DSEDTKT 327
Query: 583 PADLFAVGAGHVNPSKA 599
GAG ++ +KA
Sbjct: 328 YYSPRRQGAGLIDVAKA 344
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.0 bits (152), Expect = 3e-10
Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 42/227 (18%)
Query: 137 KDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN 196
GKGV + V+D G+ HP + +F++
Sbjct: 136 GAGLTGKGVTVAVIDTGVDASHPDL-----------------------AGSAVAGGDFVD 172
Query: 197 KSEPPI--DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGC 254
P D++GHGTH A T A + AG+AP A L + KV + G
Sbjct: 173 GDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGV-------AGVAPGAKLLLVKVLGSGGGS 225
Query: 255 PESIVNA-AIDAAVEEG--VDVLSISLGSPSLPFFADAMATA-AFTASQKGILVSCSAGN 310
E A I+ A G DV+++SLG + A+ A A A+ G+++ +AGN
Sbjct: 226 GELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGN 285
Query: 311 SGPNSSTLANEAPW------MLTVGASTIDRSIVALTQLGNQETYDG 351
G N+S P ++ VGA + ++ + + G+ D
Sbjct: 286 DGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDI 332
|
Length = 508 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D+ PG IL+ P + +SGTSM+ PH++G+AALL S P S + ++
Sbjct: 200 DVSAPGGGILSTTP---------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVR 249
Query: 560 SAIMTTAD 567
A+ TAD
Sbjct: 250 DALKKTAD 257
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 37/196 (18%)
Query: 140 NLGKG---VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN 196
G G + I +LD + HP F + P C+ GA+
Sbjct: 4 AFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAAAACQDGGAS------------- 50
Query: 197 KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKV-CETDLGCP 255
HGTH AS +FGQ + G+APL + E GC
Sbjct: 51 ---------AHGTHVASL----------IFGQPCSSVEGIAPLCRGLNIPIFAEDRRGCS 91
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFT-ASQKGILVSCSAGNSGPN 314
+ + AI+ A+E+G +++IS G + AD + A Q +L+ +AGN G
Sbjct: 92 QLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCA 151
Query: 315 SSTLANEAPWMLTVGA 330
+ P +L VGA
Sbjct: 152 CLHVPAALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 48/232 (20%), Positives = 70/232 (30%), Gaps = 44/232 (18%)
Query: 392 GKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVAD--NHVLPAVYVSYAAG 449
VL GGG I G A GA +I M+ G V L A
Sbjct: 77 IGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYR 136
Query: 450 ERIKAYINSTSSPTASIVFKGTVI-----GKKS------APEVAVF-------------- 484
+R + + + A + G +S P
Sbjct: 137 QRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL 196
Query: 485 --SSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGI 542
+ A+ + DI PGV I++A P + +SGTSM+ PH++G+
Sbjct: 197 GRTGNFSAVANFSNGEVDIAAPGVDIVSAAP---------GGGYRSMSGTSMATPHVAGV 247
Query: 543 AALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHV 594
AAL A P A+ + + DL G G
Sbjct: 248 AALWAEALPKAGGRALAALLQ------ARLTAARTTQFAPGLDLPDRGVGLG 293
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 25/128 (19%)
Query: 477 SAPEVAVFSSRGPNT---ASP-GILKPDIIGP-GVSILAAWPFSEENITNTKSTFTMISG 531
SS P +P KPD+ P GV+ + F G
Sbjct: 165 DPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGD------GDGPPNFF---G 215
Query: 532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGA 591
TS + PH +G+AAL+ SA+P +PA I+ A+ +TA + P A G+
Sbjct: 216 TSAAAPHAAGVAALVLSANPGLTPADIRDALRSTAL-------DMGE----PGYDNASGS 264
Query: 592 GHVNPSKA 599
G V+ +A
Sbjct: 265 GLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-08
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 370 PGVKNSSAAFCLPETLK--SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDEL 427
GV C T DVKGK+VL +RGG + K K+ + AG A+I+ N+
Sbjct: 23 VGVVAGPLVGCGYGTTDDSGADVKGKIVLVRRGGCS-FSEKVKNAQKAGAKAVIIYNNGD 81
Query: 428 FD------YGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASI 466
G + + +P V +SYA GE + + + + + T +
Sbjct: 82 DPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKTVTVDL 126
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 39/170 (22%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+G++D GI HP+ S +I AR F P +
Sbjct: 3 VGMIDTGIDTAHPALS-----------------------AVVI-ARLFFAGPGAPAPSA- 37
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHL-AIYKVCETDLGCPESIVNAAIDA 265
HGT AS AG G A L + + ++ A+D
Sbjct: 38 HGTAVASLLAGA--------GAQRPGLLPGADLYGADVFGRAGGGEGASALALA-RALDW 88
Query: 266 AVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
E+GV V++ISL P A A+A AA +G+++ +AGN GP +
Sbjct: 89 LAEQGVRVVNISLAGPPNALLAAAVAAAA----ARGMVLVAAAGNDGPAA 134
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 51/202 (25%), Positives = 74/202 (36%), Gaps = 44/202 (21%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ G GV + V D G+ HP F + N+
Sbjct: 1 WQLGYTGAGVKVAVFDTGLAKDHPHFR------------------------NVKERTNWT 36
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
N+ + D GHGT FV G + + G AP A + I++V +
Sbjct: 37 NE-KTLDDGLGHGT---------FVAG--VIASSREQCLGFAPDAEIYIFRVFTNNQVSY 84
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPS---LPFFADAMATAAFTASQKGILVSCSAGNSG 312
S A + A+ +DVL++S+G P PF A I++ + GN G
Sbjct: 85 TSWFLDAFNYAILTKIDVLNLSIGGPDFMDKPFVDKVWELTA-----NNIIMVSAIGNDG 139
Query: 313 PNSSTLANEAPWMLTVGASTID 334
P TL N A M +G ID
Sbjct: 140 PLYGTLNNPADQMDVIGVGGID 161
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 481 VAVFSSRGPNTASPGILKPDIIGPGV-SILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
A FS+ G DI PGV +IL+ P + + +SGTSM+ PH+
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTILSTVPK---LDGDGGGNYEYLSGTSMAAPHV 246
Query: 540 SGIAALLKSAHPD 552
SG+AAL+ S PD
Sbjct: 247 SGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-08
Identities = 56/208 (26%), Positives = 78/208 (37%), Gaps = 53/208 (25%)
Query: 142 GKGVIIGVLDMGITPGHPSF---------------SDEGMPPPPAKWKGKCELEGANCNN 186
GKGV++G++D GI HP F + G PPP + G E
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTE-----E 57
Query: 187 KIIGARNFLNKSE--PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAI 244
I A N + P D +GHGTH A AAGN N + G+AP A L +
Sbjct: 58 IINAALASDNPYDIVPSRDENGHGTHVAGIAAGNGDNNPDF--------KGVAPEAELIV 109
Query: 245 ---------YKVCETDLGCPES--IVNA---AIDAAVEEGVD-VLSISLGSPSLP----- 284
+ D+ + I+ A D A+E V++ISLG+
Sbjct: 110 VKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDGTS 169
Query: 285 FFADAMATAAFTASQKGILVSCSAGNSG 312
+ + +GI V AGN G
Sbjct: 170 LLERYIDAI---SRLRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 481 VAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLS 540
VA FS+ G D+ PG I T + + SGTSM+ P +S
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERI---------YSTTPDNEYETDSGTSMAAPVVS 264
Query: 541 GIAALLKSAHPDWSPAAIKSAIMTTA 566
G+AAL+ S +P+ + +K I+ +
Sbjct: 265 GVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 441 AVYVSYAAGERIKAYINSTSSPTAS-IVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKP 499
V V+ A + P V I + P + FS GP
Sbjct: 151 VVVVAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDRDGTP--SSFSLPGP--------WV 200
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D+ PG +I++ P + T SGTS + P +SG AAL++S PD + A ++
Sbjct: 201 DLAAPGENIVSLSPGGDGLATT--------SGTSFAAPFVSGTAALVRSRFPDLTAAQVR 252
Query: 560 SAIMTTAD 567
I TAD
Sbjct: 253 RRIEATAD 260
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-07
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 34 TYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARL 93
TYIV + + ++ +W+ + S + + ++Y Y++ +GFAA+L
Sbjct: 1 TYIVKFKDGVSKA--AVFSSHKSWH--------ASSKEEAAGASILYSYKHGFNGFAAKL 50
Query: 94 TAEEVKAMETKSGFISARVENILE 117
T EE + + + ++E
Sbjct: 51 TEEEAEKLRKHPDVEYVEPDQVVE 74
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.1 bits (121), Expect = 1e-06
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 433 VADNHVLPAVYVSYAAG-ERIKAYINSTSSPTASIVFKGTVIGK-KSAPEVAVFSSRGPN 490
+A V + AAG + A + P + +G + VA FS+ G
Sbjct: 268 LAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSP 327
Query: 491 TASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAH 550
T DI PGV+IL+ + + + + +SGTSM+ PH+SG+AAL+ SA+
Sbjct: 328 T------GVDIAAPGVNILS--LSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSAN 379
Query: 551 P-DWSPAAIKSAIMTTADIVNLEG 573
P + +PA +++ I+TTA + L G
Sbjct: 380 PNELTPAQVRNLIVTTAGLTPLSG 403
|
Length = 508 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPE---SIVNAAI 263
HGTH A AA +F G+AP A + K+ +T LG E ++V A I
Sbjct: 187 HGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMI 238
Query: 264 DAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQK-GILVSCSAGNSGPNSSTL 318
AA+E D++++S G + + + A K G++ SAGN+GP ST+
Sbjct: 239 -AAIETKCDLINMSYGEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTV 293
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 520 TNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
+ ST+ + GTSM+ PH++G+AAL+KS +P +PA I+S + +T
Sbjct: 240 SPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 53/211 (25%), Positives = 71/211 (33%), Gaps = 57/211 (27%)
Query: 146 IIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDND 205
I+ VLD GI GHP PA + ++ D+
Sbjct: 2 IVCVLDSGINRGHP-------LLAPA----------------LAEDDLDSDEPGWTADDL 38
Query: 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAH-LAIYKV----CETDLGCPESIVN 260
GHGT A A L+G G+ L +V E D I
Sbjct: 39 GHGTAVAGLA---------LYGDLTLPGNGLPRPGCRLESVRVLPPNGENDPELYGDITL 89
Query: 261 AAIDAAVEE---GVDVLSISLGSPSLPFFADAMATAAFT----ASQKGILVSCSAGNSGP 313
AI AV + V V ++SLGSP LP ++ A A++ +L SAGN G
Sbjct: 90 RAIRRAVIQNPDIVRVFNLSLGSP-LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGD 148
Query: 314 NSSTLANEAPWM------------LTVGAST 332
+ + LTVGA T
Sbjct: 149 DDAADGPPRIQDDEIEDPADSVNALTVGAIT 179
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
Query: 255 PESIVNAAIDAAVEEGVDVLSIS-------LGSPSLPFFADAMATAAFTASQKGILVSCS 307
P+S A I+AAVE+ VD++S+S + +A+ A +GIL+ CS
Sbjct: 88 PQSAAKA-IEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEAL----DRGILLFCS 142
Query: 308 AGNSGPNSSTLANEAPW---MLTVGASTIDRSIVALTQLGNQETY--DGETIFQPKDFPS 362
A + G + + +GA+ D A ++ Y GE + P
Sbjct: 143 ASDQGAFTGDTYPPPAARDRIFRIGAADEDGGADAPVGDEDRVDYILPGENVEARDRPPL 202
Query: 363 KQLPLVYPGVKNSSAA 378
V SS A
Sbjct: 203 SN-SFVT--HTGSSVA 215
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 52/217 (23%), Positives = 78/217 (35%), Gaps = 22/217 (10%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ G G+I+ V+D G+ HP G N N + +
Sbjct: 3 WEFGTGGPGIIVAVVDTGVDGTHPDLQGN--------GDGDGYDPAVNGYNFVPNVGDID 54
Query: 196 NKSEPPIDNDGHGTHTAST-AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGC 254
N GHGTH A T AA N N G G A G+AP + ++
Sbjct: 55 NDVSVG---GGHGTHVAGTIAAVN--NNGGGVGGIAG-AGGVAPGVKIMSIQIFAGRYYV 108
Query: 255 PESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATA-------AFTASQKGILVSCS 307
+ V AAI A + G +L S G ++ + A A + G +V S
Sbjct: 109 GDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFS 168
Query: 308 AGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLG 344
AGNS + P ++ V A + + + + G
Sbjct: 169 AGNSYTDEHRFPAAYPGVIAVAALDTNDNKASFSNYG 205
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 482 AVFSSRGPNTASPGILKPDIIGPGVSI--LAAWPFSEENIT-NTKSTFTMISGTSMSCPH 538
A +S+ G D++ PGV I S + +F SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSF---SGTSFASPV 215
Query: 539 LSGIAALLKSAHPDWSPAAIKSAIMTT 565
+G+AAL+ SA+P+ +PA ++ + +T
Sbjct: 216 AAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 236 MAPLAHLAIYKVCETDLGCPESIV--NAAIDAAVEEGVDVLSISLGSPSLPFFADAMATA 293
+AP A LA + + AAI A G D++ +G + PFF D
Sbjct: 61 IAPGAELAFH-------TAGGGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQ 113
Query: 294 AF--TASQKGILVSCSAGNSGPNSSTLA-NEAPWMLTVGAS 331
A + G+L SAGN G + S AP + VGA
Sbjct: 114 AVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAV 154
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 481 VAVFSSRGPNT----ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
+A FSSRG T G +KPDI+ G + + ++ +SGTS++
Sbjct: 166 IARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS-KLK----GGCRA----LSGTSVAS 216
Query: 537 PHLSGIAALLKSAHPD----WSPAAIKSAIMTTAD 567
P ++G ALL S P+ +PA++K A++ +A
Sbjct: 217 PVVAGAVALLLSTVPEKRDLINPASMKQALIESAT 251
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 55/221 (24%), Positives = 84/221 (38%), Gaps = 49/221 (22%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + V+D G+ HP +P G + + +
Sbjct: 12 GAGVTVAVIDTGVDD-HPRLPGLVLP-------GGDFVGSGDGTD--------------- 48
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGT-AAGMAPLAHL-------AIYKVCETDLG 253
D DGHGT A AG G +G+AP A + A ++ E G
Sbjct: 49 -DCDGHGTLVAGIIAG---------RPGEGDGFSGVAPDARILPIRQTSAAFEPDEGTSG 98
Query: 254 CPE-SIVNAAIDAAVEEGVDVLSISLGS--PSLPFFADAMATAAFT-ASQKGILVSCSAG 309
+ + AI A + G DV++ISL + P+ D AA A KG++V +AG
Sbjct: 99 VGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAAG 158
Query: 310 NSGPNSSTLANEAP-W---MLTVGASTIDRSIVALTQLGNQ 346
N+G + P W +L VG+ D + + + G
Sbjct: 159 NTGGDGQKTTVVYPAWYPGVLAVGSIDRDGTPSSFSLPGPW 199
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 232 TAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSP---SLPFFAD 288
A +AP A++ +Y T P AA+ V+SIS G P P +A
Sbjct: 82 YAGAIAPGANITLYFAPGTVTNGPLLAFLAAVLDNPN-LPSVISISYGEPEQSLPPAYAQ 140
Query: 289 AMATAAFTASQKGILVSCSAGNSGPNSSTLANEA-----------PWMLTVGASTI 333
+ A+ +GI V ++G+SG P++ VG +T+
Sbjct: 141 RVCNLFAQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTL 196
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 504 PGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIM 563
PG +I + P +SGTS + PH+SG AALL P + ++ ++
Sbjct: 211 PGENIYSTDPDGGNGYGR-------VSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL 263
Query: 564 TTAD 567
TTA
Sbjct: 264 TTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 63/248 (25%), Positives = 89/248 (35%), Gaps = 77/248 (31%)
Query: 143 KGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKI----------IGAR 192
K VI+ VLD G+ H W K E+ G N I +
Sbjct: 1 KTVIVAVLDSGVDIDHEDLK-------GKLWINKKEIPG----NGIDDDNNGYIDDVNGW 49
Query: 193 NFL-----------------------NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQA 229
NFL N PI + HGTH A A NG + G A
Sbjct: 50 NFLGQYDPRRIVGDDPYDLTEKGYGNNDVNGPISDADHGTHVAGIIAAVRDNGIGIDGVA 109
Query: 230 NGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLG---SPSLP 284
+ ++ I + G + I N AI AV+ G V+++S G SP+
Sbjct: 110 D----------NVKIMPLRIVPNGDERDKDIAN-AIRYAVDNGAKVINMSFGKSFSPNKE 158
Query: 285 FFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN-----------EAPWMLTVGAS-- 331
+ DA+ A KG+L+ +AGN G + N A +TVGAS
Sbjct: 159 WVDDAIK----YAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSK 214
Query: 332 TIDRSIVA 339
+ ++VA
Sbjct: 215 KYENNLVA 222
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 485 SSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAA 544
SSRGP + G L I PG +I S N T S +++GTSMS P+ G A
Sbjct: 333 SSRGP--TADGALGVSISAPGGAIA-----SVPNWTLQGSQ--LMNGTSMSSPNACGGIA 383
Query: 545 L----LKSAHPDWSPAAIKSAIMTTA 566
L LK+ ++P +++ A+ TA
Sbjct: 384 LLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWP-FSEENITNTKSTFTMISGTSMSCPH 538
+V +SSRGP+ A G KPD+ G A + F + GTSM+ P
Sbjct: 220 DVVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPM 277
Query: 539 LSGIAALLKSAHPD------WSPAAIKSAIMTTA 566
+G AAL+ SA + + P +++ +M+TA
Sbjct: 278 TAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 501 IIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS 560
GV I+A P + + SG S + PH++G+ ALL S PD +K
Sbjct: 165 FSADGVDIIAPAP-------HGRYLTV--SGNSFAAPHVTGMVALLLSEKPDIDANDLKR 215
Query: 561 A 561
Sbjct: 216 L 216
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 54/181 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G+GV + ++D G F G ++ + L GA + P
Sbjct: 20 GRGVRVAMVDTGFYAHPF-FESRG-------YQVRVVLAP--------GATD------PA 57
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGT + ANLF +AP A K+ DL
Sbjct: 58 CDENGHGTGES----------ANLFA--------IAPGAQFIGVKLGGPDL----VNSVG 95
Query: 262 AIDAAVEEGVDVLSISLG----------SPSLPFFADAMATAAFTASQKGILVSCSAGNS 311
A A+ D++S S G S SLP A+A A +GI+V SAGN
Sbjct: 96 AFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNG 155
Query: 312 G 312
G
Sbjct: 156 G 156
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 50/211 (23%), Positives = 75/211 (35%), Gaps = 30/211 (14%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G+GV+I ++D G+ HP G WK K + + ++
Sbjct: 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFDYKAYLLPGMDKWGGFYVIMY--- 53
Query: 202 IDNDGHGTHTASTAAGN---FVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESI 258
D HGT AS AAG N G+ G+AP A +A K +
Sbjct: 54 -DFFSHGTSCASVAAGRGKMEYNLYGYTGKF--LIRGIAPDAKIAAVKALWFGDVIYAWL 110
Query: 259 VNAAIDAAVEEG---------VDVLSISLGSPSLPFFADAM------ATAAFTASQKGIL 303
A D + VDV+S S G + + A + G+
Sbjct: 111 WTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVP 170
Query: 304 VSCSAGNSGPNSSTLANE--APWMLTVGAST 332
+ +AGN GP T+ A ++VGA+T
Sbjct: 171 IVSAAGNGGPGYGTITAPGAASLAISVGAAT 201
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D PGV + A P + +SGTS + P ++ ALL A P A
Sbjct: 168 DFAAPGVDVWVAAP---------GGGYRYVSGTSFAAPFVTAALALLLQASPLAPDDARA 218
Query: 560 SAIMTTAD 567
T D
Sbjct: 219 RLAATAKD 226
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 22/90 (24%)
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+ G + GIL PG +IL A P E T S GTS + P ++G+A
Sbjct: 126 FSNWGEAYQAQGIL-----APGENILGAQPGGE---TVRLS------GTSFATPVVTGVA 171
Query: 544 ALLKSAH------PDWSPAAIKSAIMTTAD 567
ALL S PD P A+++A++ +A
Sbjct: 172 ALLLSLQLQQGETPD--PQAVRTALLNSAI 199
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 50/198 (25%)
Query: 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPID 203
GV + V+D G+ HP + + E I+ S D
Sbjct: 1 GVRVAVIDSGVDTDHPDLGN-----------LALDGEVTIDLEIIVV-------SAEGGD 42
Query: 204 NDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAI 263
DGHGT A G AP A + K+ D C ++ A+
Sbjct: 43 KDGHGTACA------------------GIIKKYAPEAEIGSIKILGEDGRCNSFVLEKAL 84
Query: 264 DAAVEEGVDVLSISLGSPSLPFFAD--AMATAAFTASQKGILVSCSAGNSGPNSSTLANE 321
A VE + ++++SLG P F + A+ GI+V+ + PN++ +
Sbjct: 85 RACVENDIRIVNLSLGGPGDRDFPLLKELLEYAYK--AGGIIVA-----AAPNNNDIG-T 136
Query: 322 APWMLT----VGASTIDR 335
P V + T D
Sbjct: 137 PPASFPNVIGVKSDTADD 154
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAI--------YKVCETDLGCPESI 258
HGTH AS +FGQ G+AP I ++ + DL
Sbjct: 1 HGTHVAS----------IIFGQPGSPVPGIAPKCRGLIIPIFFDGARRISQLDLA----- 45
Query: 259 VNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQ-KGILVSCSAGNSGPNSST 317
AI+ AV G ++++IS G + A+ A Q IL+ +AGN G
Sbjct: 46 --RAIELAVNAGANIINISAGQLTDTGEAERWLEDAVRLCQENNILIVAAAGNDGCECLH 103
Query: 318 LANEAPWMLTVGA 330
+ P +L VGA
Sbjct: 104 VPAALPGVLAVGA 116
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 47/217 (21%), Positives = 75/217 (34%), Gaps = 51/217 (23%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ GKGV + V+D G+ HP D P + + N+ N
Sbjct: 32 WEQGITGKGVTVAVVDDGLEITHPDLKDN-YDPEASY----------DFND------NDP 74
Query: 196 NKSEPPIDNDGHGT---HTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL 252
+ + D++ HGT + N + G G+AP A L ++ + D+
Sbjct: 75 DPTPRYDDDNSHGTRCAGEIAAVGNNGICG-----------VGVAPGAKLGGIRMLDGDV 123
Query: 253 GCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG----------I 302
+V A + +D+ S S G D A A + G I
Sbjct: 124 T---DVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSI 180
Query: 303 LVSCSAGNSG-----PNSSTLANEAPWMLTVGASTID 334
V +AGN G N N + ++V A T +
Sbjct: 181 FVW-AAGNGGNLGDNCNCDGYNNS-IYTISVSAVTAN 215
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.87 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.28 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.25 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.86 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.74 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.74 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.7 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.68 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.67 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.6 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.56 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.55 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.54 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.52 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.51 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.49 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.48 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.47 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.44 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.41 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.41 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.32 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.92 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.43 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.76 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.61 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.33 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.17 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 95.92 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.74 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.28 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.89 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 94.69 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 94.0 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 93.91 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 92.49 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.74 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 87.72 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 84.06 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 82.34 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 80.26 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=435.12 Aligned_cols=288 Identities=56% Similarity=0.849 Sum_probs=247.4
Q ss_pred cCCCCCCCCCccCccCCCC--CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCC----cccCccee
Q 042259 116 LEPQTTHSPNFLGLHQNSG--FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEG----ANCNNKII 189 (745)
Q Consensus 116 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~----~~~n~ki~ 189 (745)
++++++++++|+++..... +|..+++|+||+|||||||||++||+|.++...++...|++.|..+. ..+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688899999999887444 47789999999999999999999999999988999999999998876 34899999
Q ss_pred eeeeCCCCC------------CCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHH
Q 042259 190 GARNFLNKS------------EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPES 257 (745)
Q Consensus 190 ~~~~~~~~~------------~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~ 257 (745)
+.++|.++. .++.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++....+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 999987642 34578899999999999999776655555566667999999999999999933558899
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccce
Q 042259 258 IVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSI 337 (745)
Q Consensus 258 ~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~ 337 (745)
++++|+++|++++++|||||||......+.+.+..+++.+.++|+++|+||||+|+.....++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987645566777878888899999999999999988888888999999999830
Q ss_pred EEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCc
Q 042259 338 VALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGG 417 (745)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga 417 (745)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCc
Q 042259 418 AAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGIL 497 (745)
Q Consensus 418 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~ 497 (745)
+
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred cCceEeCCccEEeccCCCC-ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 498 KPDIIGPGVSILAAWPFSE-ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 498 KPDi~APG~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
||||+|||.+|++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7799999999999987422 112333478999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=444.19 Aligned_cols=298 Identities=20% Similarity=0.234 Sum_probs=216.5
Q ss_pred CccCccC--CCCCcc--CCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcc---eeeeeeCCCC
Q 042259 125 NFLGLHQ--NSGFWK--DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNK---IIGARNFLNK 197 (745)
Q Consensus 125 ~~~g~~~--~~~~~~--~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~k---i~~~~~~~~~ 197 (745)
..|+++. ...+|. .+.+|+||+|||||||||++||||.++-...+. ...|.... ...++. -+.+++|.++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~Grdgi--DdD~nG~vdd~~G~nfVd~ 370 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGRKGI--DDDNNGNVDDEYGANFVNN 370 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCcccc--ccccCCcccccccccccCC
Confidence 3466654 445665 456899999999999999999999864211000 00010000 001111 1345778776
Q ss_pred CCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEE
Q 042259 198 SEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSI 276 (745)
Q Consensus 198 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~ 276 (745)
..++.|+.||||||||||||...++ .| +.||||+|+|+++|+++ ..+ +..+++++||+||++.|++||||
T Consensus 371 ~~~P~D~~GHGTHVAGIIAA~gnN~-------~G-i~GVAP~AkLi~vKVld-~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 371 DGGPMDDNYHGTHVSGIISAIGNNN-------IG-IVGVDKRSKLIICKALD-SHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred CCCCCCCCCcchHHHHHHhccccCC-------Cc-eeeeecccccceEEEec-CCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 6778899999999999999975321 22 57999999999999998 555 78899999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCC--------------ccc----CCCceEEEeecccccceE
Q 042259 277 SLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSST--------------LAN----EAPWMLTVGASTIDRSIV 338 (745)
Q Consensus 277 S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVga~~~~~~~~ 338 (745)
|||+.. +...+..++.+|.++|+++|+||||+|..... ++. ..+++|+|||...+.
T Consensus 442 SlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--- 515 (639)
T PTZ00262 442 SFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--- 515 (639)
T ss_pred ccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---
Confidence 999753 23455666678899999999999999865321 221 235666666632100
Q ss_pred EEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCce
Q 042259 339 ALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGA 418 (745)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~ 418 (745)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCcc
Q 042259 419 AMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILK 498 (745)
Q Consensus 419 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~K 498 (745)
......+.||++|. .+
T Consensus 516 ---------------------------------------------------------~~~~s~s~~Snyg~-------~~ 531 (639)
T PTZ00262 516 ---------------------------------------------------------NNQYSLSPNSFYSA-------KY 531 (639)
T ss_pred ---------------------------------------------------------CCcccccccccCCC-------Cc
Confidence 00012345666652 23
Q ss_pred CceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccC
Q 042259 499 PDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMN 578 (745)
Q Consensus 499 PDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~ 578 (745)
+||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.+++..
T Consensus 532 VDIaAPG~dI~St~p~---------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~------ 596 (639)
T PTZ00262 532 CQLAAPGTNIYSTFPK---------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL------ 596 (639)
T ss_pred ceEEeCCCCeeeccCC---------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC------
Confidence 4999999999999987 7899999999999999999999999999999999999999999876321
Q ss_pred CCCCCCCCcccCC-CCCCccCCCCCCccc
Q 042259 579 HHLLPADLFAVGA-GHVNPSKANDPGLVY 606 (745)
Q Consensus 579 ~~~~~~~~~~~G~-G~vn~~~A~~~~lv~ 606 (745)
+..+|| |+||+++|++.++.+
T Consensus 597 -------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------CCccccCcEEcHHHHHHHHHhc
Confidence 122333 899999999865544
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=414.13 Aligned_cols=270 Identities=26% Similarity=0.266 Sum_probs=204.3
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhccc
Q 042259 139 SNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGN 218 (745)
Q Consensus 139 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 218 (745)
+++|+||+|+|||||||..||++.+...+..+ +...+........|..+|||||||||+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~-------------------~~~~~~~~~~~~~d~~gHGT~vAgii~-- 59 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLP-------------------GNVNVLGDLDGGSGGGDEGRAMLEIIH-- 59 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCC-------------------cceeeccccCCCCCCCchHHHHHHHHh--
Confidence 57999999999999999998865432111111 111111111345678899999999995
Q ss_pred ccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-hhhHHHHHHHHH
Q 042259 219 FVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPF-FADAMATAAFTA 297 (745)
Q Consensus 219 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~-~~~~~~~a~~~a 297 (745)
||||+|+|+.+|+.. ..+++++||+|++++|++|||||||....+. ....+..++.++
T Consensus 60 ----------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a 118 (275)
T cd05562 60 ----------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEV 118 (275)
T ss_pred ----------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHH
Confidence 899999999998755 4788999999999999999999999865433 234566666677
Q ss_pred hcC-CcEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCC
Q 042259 298 SQK-GILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNS 375 (745)
Q Consensus 298 ~~~-Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (745)
.++ |+++|+||||+|... ...++..|++|+|||.+.+...... .
T Consensus 119 ~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~-----------------------------s----- 164 (275)
T cd05562 119 VASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG-----------------------------S----- 164 (275)
T ss_pred HHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc-----------------------------c-----
Confidence 776 999999999999864 3456889999999996532211000 0
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAY 455 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
| .+ .
T Consensus 165 ----~-------------------~~--------------------------~--------------------------- 168 (275)
T cd05562 165 ----D-------------------PA--------------------------P--------------------------- 168 (275)
T ss_pred ----c-------------------cc--------------------------c---------------------------
Confidence 0 00 0
Q ss_pred HhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc-cEEeccCCCCccCCCcccceeeeccccc
Q 042259 456 INSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV-SILAAWPFSEENITNTKSTFTMISGTSM 534 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
.......+.||++||+. ++++||||+|||+ ++.+++.. +.|..++||||
T Consensus 169 -------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~sGTS~ 218 (275)
T cd05562 169 -------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNFFGTSA 218 (275)
T ss_pred -------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------CceeecccchH
Confidence 00011345688899987 6789999999975 45555554 68999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 535 SCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
|||||||++|||+|++|+|++++||++|++||+++.. ++.+..||||+||+.+|++
T Consensus 219 AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 219 AAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999999987742 2456789999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=404.40 Aligned_cols=242 Identities=29% Similarity=0.452 Sum_probs=198.3
Q ss_pred ccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhh
Q 042259 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTA 215 (745)
Q Consensus 136 ~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGii 215 (745)
|+.+++|+||+|||||||||.+||+|.+.. ...+|... ....|..||||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~------------------------~~~~~~~~-~~~~d~~gHGT~VAGiI 55 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK------------------------ERTNWTNE-KTLDDGLGHGTFVAGVI 55 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc------------------------cccccCCC-CCCCCCCCcHHHHHHHH
Confidence 899999999999999999999999997420 11223222 34567889999999999
Q ss_pred cccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHH
Q 042259 216 AGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAA 294 (745)
Q Consensus 216 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~ 294 (745)
+|+.. .+.||||+|+|+.+|++. +.+ ...+.++++++||+++++||||||||... +....+..++
T Consensus 56 a~~~~-----------~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~~ 121 (255)
T cd07479 56 ASSRE-----------QCLGFAPDAEIYIFRVFT-NNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDKV 121 (255)
T ss_pred HccCC-----------CceeECCCCEEEEEEeec-CCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHHH
Confidence 98741 147999999999999998 554 66778999999999999999999999753 2234455556
Q ss_pred HHHhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCC
Q 042259 295 FTASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGV 372 (745)
Q Consensus 295 ~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (745)
.++.++|++||+||||+|+... ..+...+++|+||+..
T Consensus 122 ~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------------------------- 161 (255)
T cd07479 122 WELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------------------------- 161 (255)
T ss_pred HHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------------------------
Confidence 6788999999999999997543 3466778899999842
Q ss_pred CCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHH
Q 042259 373 KNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERI 452 (745)
Q Consensus 373 ~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCC----CCCCCccCceEeCCccEEeccCCCCccCCCcccceee
Q 042259 453 KAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT----ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTM 528 (745)
Q Consensus 453 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~----~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.|||+|++. ...+++||||+|||.+|+++... +.|..
T Consensus 162 ------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------~~~~~ 208 (255)
T cd07479 162 ------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------GGCRA 208 (255)
T ss_pred ------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------CCeEE
Confidence 122678999999652 12578899999999999998776 67899
Q ss_pred eccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHhcccccc
Q 042259 529 ISGTSMSCPHLSGIAALLKSAHP----DWSPAAIKSAIMTTADIV 569 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p----~~s~~~ik~~L~~TA~~~ 569 (745)
++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 209 ~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999999999999999999998 789999999999999976
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=411.05 Aligned_cols=285 Identities=27% Similarity=0.320 Sum_probs=191.9
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC-CCCCCCCCChhhhhhhhccccc
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS-EPPIDNDGHGTHTASTAAGNFV 220 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~-~~~~d~~gHGThVAGiiag~~~ 220 (745)
|+||+|+|||||||.+||||.++... .|+..++ ....+..+.++..+. ..+.|++||||||||||||...
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d-----~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~ 71 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD-----YKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGK 71 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC-----cCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCc
Confidence 89999999999999999999754211 1111111 011233344444332 3467899999999999999864
Q ss_pred CCCcccCC-CCcceeeeccCceEEeeecccCCCCCCHHHHHH-------HHHHH--HhCCCcEEEEccCCCCCCCh----
Q 042259 221 NGANLFGQ-ANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA-------AIDAA--VEEGVDVLSISLGSPSLPFF---- 286 (745)
Q Consensus 221 ~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--~~~g~dVIn~S~G~~~~~~~---- 286 (745)
...+..++ ....+.||||+|+|+.+|++...+......+.. +++|. .+++++|||||||.....+.
T Consensus 72 ~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~ 151 (311)
T cd07497 72 MEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP 151 (311)
T ss_pred ccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCcccccc
Confidence 32221111 122368999999999999997222232222332 34443 36799999999998542211
Q ss_pred -hhHHHHHHHH-HhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 287 -ADAMATAAFT-ASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 287 -~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
.+........ +.++|+++|+||||+|+... ..++.++++|+|||++.....+.
T Consensus 152 g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------------- 208 (311)
T cd07497 152 GLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF----------------------- 208 (311)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-----------------------
Confidence 1112222222 23899999999999998643 45678899999999642110000
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
+.. ..
T Consensus 209 --~~~---------------------------~~---------------------------------------------- 213 (311)
T cd07497 209 --YLF---------------------------GY---------------------------------------------- 213 (311)
T ss_pred --hhh---------------------------cc----------------------------------------------
Confidence 000 00
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc-cCCC
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE-NITN 521 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~-~~~~ 521 (745)
.....+.++.||||||+. ++++||||+|||++|+++.+.... ....
T Consensus 214 -------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~~~ 260 (311)
T cd07497 214 -------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGALD 260 (311)
T ss_pred -------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcccC
Confidence 011234789999999998 799999999999999998765321 1111
Q ss_pred cccceeeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHhccc
Q 042259 522 TKSTFTMISGTSMSCPHLSGIAALLKSAHP------DWSPAAIKSAIMTTA 566 (745)
Q Consensus 522 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~s~~~ik~~L~~TA 566 (745)
....|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 261 ~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 261 GNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 224789999999999999999999999876 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=418.93 Aligned_cols=309 Identities=29% Similarity=0.382 Sum_probs=235.6
Q ss_pred CCccCCC-CCCccEEEEecCCCCCCCCCCCCCCCCCCCC-----ccccccccCC-cccCcceeeeeeCCCCCCCCC---C
Q 042259 134 GFWKDSN-LGKGVIIGVLDMGITPGHPSFSDEGMPPPPA-----KWKGKCELEG-ANCNNKIIGARNFLNKSEPPI---D 203 (745)
Q Consensus 134 ~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~~~~~~~~~~-~~~n~ki~~~~~~~~~~~~~~---d 203 (745)
++|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+. .+.+.+++.+++|.+...... +
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 9999999999999999999999764443211 2222222222 567889999999987654443 7
Q ss_pred CCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccC--CCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 042259 204 NDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCET--DLGCPESIVNAAIDAAVEEGVDVLSISLGSP 281 (745)
Q Consensus 204 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~ 281 (745)
..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. ........++++++++++.+++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 88999999999999864321 1223689999999999999972 3347788899999999999999999999987
Q ss_pred CCC-ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc----------------ccCCCceEEEeecccccceEEEEEeC
Q 042259 282 SLP-FFADAMATAAFTASQKGILVSCSAGNSGPNSSTL----------------ANEAPWMLTVGASTIDRSIVALTQLG 344 (745)
Q Consensus 282 ~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~~~ 344 (745)
... .....+..++.++.++|+++|+||||+|...... +...+++|+||+....
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~---------- 225 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK---------- 225 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc----------
Confidence 532 4445666777788899999999999998654321 2234455555553100
Q ss_pred CCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEec
Q 042259 345 NQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMN 424 (745)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 424 (745)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeC
Q 042259 425 DELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGP 504 (745)
Q Consensus 425 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~AP 504 (745)
......+.++.||+|||+. ++++||||+||
T Consensus 226 ------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 226 ------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred ------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 0012234788999999998 78999999999
Q ss_pred CccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHhcccccccCCCCcc
Q 042259 505 GVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA----HPDWSPAA----IKSAIMTTADIVNLEGKPI 576 (745)
Q Consensus 505 G~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~s~~~----ik~~L~~TA~~~~~~g~~~ 576 (745)
|.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+....
T Consensus 256 G~~i~s~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~---- 322 (346)
T cd07475 256 GGNIYSTVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS---- 322 (346)
T ss_pred CCCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc----
Confidence 9999999877 78999999999999999999999997 78999876 788999999852211
Q ss_pred cCCCCCCCCCcccCCCCCCccCCCC
Q 042259 577 MNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 577 ~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
...+.++.+..+|+|+||+++||+
T Consensus 323 -~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 -EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -CCCCccCCccccCcchhcHHHhhC
Confidence 112456778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=424.11 Aligned_cols=398 Identities=25% Similarity=0.269 Sum_probs=240.6
Q ss_pred CCCCccEEEEecCCCCCCCCCCCC-CCCCCCCCccccccccCCcccCcceeeeeeCCC-------------CCCCCCCCC
Q 042259 140 NLGKGVIIGVLDMGITPGHPSFSD-EGMPPPPAKWKGKCELEGANCNNKIIGARNFLN-------------KSEPPIDND 205 (745)
Q Consensus 140 ~~G~gv~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~-------------~~~~~~d~~ 205 (745)
++|+||+|||||||||+.||+|.+ ++.+|+...|++....+. ......++..+.. +.....|..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~ 78 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP--PPGGYYGGGEYTEEIINAALASDNPYDIVPSRDEN 78 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCC--CCccccCceEEeHHHHHHHHhcCCccccCcCCCCC
Confidence 489999999999999999999994 577899999999887653 1111111111110 013456889
Q ss_pred CChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-----------CCHHHHHHHHHHHHhC-----
Q 042259 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-----------CPESIVNAAIDAAVEE----- 269 (745)
Q Consensus 206 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-----------~~~~~i~~ai~~a~~~----- 269 (745)
||||||||||||+..++ ..+.||||+|+|+++|++. ..+ +...+++.||+|+++.
T Consensus 79 GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~-~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 79 GHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQ-AKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeec-CCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 99999999999986431 2358999999999999998 443 5688999999999874
Q ss_pred CCcEEEEccCCCC-CCChhhHHHHHHHHHhcC-CcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCe
Q 042259 270 GVDVLSISLGSPS-LPFFADAMATAAFTASQK-GILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQE 347 (745)
Q Consensus 270 g~dVIn~S~G~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~ 347 (745)
.+.|||||||... .....+.++.++..+.++ |++||+||||+|....+..+... .........+.++.++
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~ 221 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGE 221 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCC
Confidence 4689999999864 334455666666666655 99999999999987655443100 0001111223333333
Q ss_pred eeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCC--C---CCCcccceEEEEeeCCCcc------hhhhhhhHhhcC
Q 042259 348 TYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPET--L---KSIDVKGKVVLCQRGGGTQ------RIRKGKDVKDAG 416 (745)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~---~~~~~~g~ivl~~~~g~~~------~~~~~~~~~~~G 416 (745)
......+|.... ..-.+.++.+..... ..-.+.. . .......++.+. .+.... ......+ ...|
T Consensus 222 ~~~~~eiW~~~~-d~~~v~i~sP~Ge~~--~~i~~~~~~~~~~~~~~~~t~i~v~-y~~~~~~~g~~~i~i~~~~-~~~G 296 (455)
T cd07478 222 KGFNLEIWGDFP-DRFSVSIISPSGESS--GRINPGIGGSESYKFVFEGTTVYVY-YYLPEPYTGDQLIFIRFKN-IKPG 296 (455)
T ss_pred cceEEEEecCCC-CEEEEEEECCCCCcc--CccCcCCCcceeEEEEECCeEEEEE-EcCCCCCCCCeEEEEEccC-CCcc
Confidence 322233333221 000111111111000 0000000 0 000001111111 110000 0000111 1123
Q ss_pred ceEEEEecCCC-CCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceE-----ec-C-CCCCceecccCCC
Q 042259 417 GAAMILMNDEL-FDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTV-----IG-K-KSAPEVAVFSSRG 488 (745)
Q Consensus 417 a~g~i~~n~~~-~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~-----~~-~-~~~~~~a~fSS~G 488 (745)
..-+.++.... .+. -..|+|.-.+...+.. ++. +.+..+|+.+.+. ++ . ...+.++.|||||
T Consensus 297 iW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~----f~~--~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G 366 (455)
T cd07478 297 IWKIRLTGVSITDGR----FDAWLPSRGLLSENTR----FLE--PDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRG 366 (455)
T ss_pred ceEEEEEeccCCCce----EEEEecCcCcCCCCCE----eec--CCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCC
Confidence 33333332211 111 1234443333322211 111 2334455555321 11 1 2345699999999
Q ss_pred CCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHH
Q 042259 489 PNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAH------PDWSPAAIKSAI 562 (745)
Q Consensus 489 P~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~~s~~~ik~~L 562 (745)
|+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|
T Consensus 367 ~~~--~~~~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L 435 (455)
T cd07478 367 PTR--DGRIKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYL 435 (455)
T ss_pred cCC--CCCcCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHH
Confidence 998 789999999999999999997 789999999999999999999999975 567999999999
Q ss_pred hcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259 563 MTTADIVNLEGKPIMNHHLLPADLFAVGAG 592 (745)
Q Consensus 563 ~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 592 (745)
++||+++.. ..+++++||||
T Consensus 436 ~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 436 IRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HHhCccCCC----------CCCCCCCCCCC
Confidence 999998742 24678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=407.09 Aligned_cols=285 Identities=33% Similarity=0.465 Sum_probs=226.2
Q ss_pred CCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCC----------CCCCC
Q 042259 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNK----------SEPPI 202 (745)
Q Consensus 133 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~----------~~~~~ 202 (745)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.+++..+ ...+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-----------------GCKVAGGYDFVGDDYDGTNPPVPDDDPM 65 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-----------------CceeccccccCCcccccccCCCCCCCCC
Confidence 45899999999999999999999999999864221 1122223333211 13456
Q ss_pred CCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 042259 203 DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSP 281 (745)
Q Consensus 203 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~ 281 (745)
|..+|||||||||+|...+ ..+.||||+|+|+.+|++. ..+ .....++++++++++++++|||||||..
T Consensus 66 d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~ 135 (312)
T cd07489 66 DCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFG-CSGSTTEDTIIAAFLRAYEDGADVITASLGGP 135 (312)
T ss_pred CCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeec-CCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcC
Confidence 7799999999999998532 1258999999999999998 444 7778899999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCC---CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCC
Q 042259 282 SLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS---TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPK 358 (745)
Q Consensus 282 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (745)
.. +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 136 ~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------------- 188 (312)
T cd07489 136 SG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------------- 188 (312)
T ss_pred CC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------------
Confidence 42 23355666667888899999999999987643 3356678888888731
Q ss_pred CCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcc
Q 042259 359 DFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHV 438 (745)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 438 (745)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCcc
Q 042259 439 LPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEEN 518 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~ 518 (745)
+.||++||+. +...||||+|||++++++++...
T Consensus 189 -------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-- 221 (312)
T cd07489 189 -------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-- 221 (312)
T ss_pred -------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC--
Confidence 4689999998 67899999999999999988732
Q ss_pred CCCcccceeeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCcc
Q 042259 519 ITNTKSTFTMISGTSMSCPHLSGIAALLKSAH-PDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPS 597 (745)
Q Consensus 519 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 597 (745)
+.|..++|||||||+|||++||++|++ |.+++.+||++|++||..+...+..... ..+++...+|||+||++
T Consensus 222 -----~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 222 -----GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAY 294 (312)
T ss_pred -----CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHH
Confidence 459999999999999999999999999 9999999999999999987544321111 11356679999999999
Q ss_pred CCCCCCcc
Q 042259 598 KANDPGLV 605 (745)
Q Consensus 598 ~A~~~~lv 605 (745)
+|++..-.
T Consensus 295 ~a~~~~~~ 302 (312)
T cd07489 295 KALYATTT 302 (312)
T ss_pred HHhcCCcc
Confidence 99995433
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=388.74 Aligned_cols=248 Identities=27% Similarity=0.341 Sum_probs=204.5
Q ss_pred CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAST 214 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGi 214 (745)
+|..+++|+||+|||||+|||.+||+|.+....+.. .+........|..+||||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~----------------------~~~~~~~~~~~~~gHGT~VAgi 59 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF----------------------TYAAAACQDGGASAHGTHVASL 59 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc----------------------CccccCCCCCCCCCcHHHHHHH
Confidence 799999999999999999999999999875322111 1111113456778999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC-CCChhhHHHH
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPS-LPFFADAMAT 292 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~-~~~~~~~~~~ 292 (745)
|+|+... .+.||||+|+|+.+|++..... ++..++++||+||+++|++|||||||... .......+..
T Consensus 60 i~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~ 129 (267)
T cd07476 60 IFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILAN 129 (267)
T ss_pred HhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHH
Confidence 9987421 2479999999999999872222 45778999999999999999999999754 2334566777
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCC
Q 042259 293 AAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGV 372 (745)
Q Consensus 293 a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (745)
++.++.++|+++|+||||+|.....+++..+++|+||+...
T Consensus 130 a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------------------- 170 (267)
T cd07476 130 AVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------------------------- 170 (267)
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------------------------
Confidence 77788999999999999999888888888999999999421
Q ss_pred CCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHH
Q 042259 373 KNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERI 452 (745)
Q Consensus 373 ~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccc
Q 042259 453 KAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGT 532 (745)
Q Consensus 453 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 532 (745)
.+.++.||++|+.. .||||+|||.+|+++.+. +.|..++||
T Consensus 171 -------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---------~~~~~~sGT 211 (267)
T cd07476 171 -------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---------GEVVRRSGT 211 (267)
T ss_pred -------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC---------CCeEEeccH
Confidence 12457899999864 488999999999999887 789999999
Q ss_pred cchhHHHHHHHHHHHhhCCC----CCHHHHHHHHhcccccccCC
Q 042259 533 SMSCPHLSGIAALLKSAHPD----WSPAAIKSAIMTTADIVNLE 572 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p~----~s~~~ik~~L~~TA~~~~~~ 572 (745)
|||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 212 S~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 212 SFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 99999999999999999886 89999999999999988543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=392.60 Aligned_cols=277 Identities=43% Similarity=0.621 Sum_probs=215.8
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCC---------------CCCCCC
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP---------------PIDNDG 206 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~---------------~~d~~g 206 (745)
|+||+|||||+|||++||+|.+... .+.++...++|...... ..|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999985421 23445555555543222 234889
Q ss_pred ChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCh
Q 042259 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFF 286 (745)
Q Consensus 207 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~ 286 (745)
|||||||+|+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+|+++++++|||||||..... .
T Consensus 64 HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~ 134 (295)
T cd07474 64 HGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-P 134 (295)
T ss_pred cHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-C
Confidence 999999999988533 2235899999999999999833347888999999999999999999999976432 3
Q ss_pred hhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc--ccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCc
Q 042259 287 ADAMATAAFTASQKGILVSCSAGNSGPNSSTL--ANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQ 364 (745)
Q Consensus 287 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (745)
.+.+..++..+.++|+++|+||||+|...... +...+++|+||++....
T Consensus 135 ~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------------- 185 (295)
T cd07474 135 DDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------------- 185 (295)
T ss_pred CCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------------
Confidence 45566677788899999999999998765543 56789999999953100
Q ss_pred eeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEE
Q 042259 365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCC-CCCCCCCCCccCceEeCCccEEeccCCCCccCCCcc
Q 042259 445 SYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSR-GPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK 523 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~-GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~ 523 (745)
.........|+++ |++. +..+||||+|||++|++++....
T Consensus 186 ------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~------- 226 (295)
T cd07474 186 ------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG------- 226 (295)
T ss_pred ------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------
Confidence 0011133444554 4554 67899999999999999987632
Q ss_pred cceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCC
Q 042259 524 STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599 (745)
Q Consensus 524 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A 599 (745)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..||+|+||+.+|
T Consensus 227 ~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 578999999999999999999999999999999999999999998765432 123456899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=378.59 Aligned_cols=235 Identities=29% Similarity=0.402 Sum_probs=192.7
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCc
Q 042259 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGAN 224 (745)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~ 224 (745)
|+|||||||||.+||+|.++.. ..+++.. ....|..+|||||||||+|+....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-----------------------~~~~~~~--~~~~~~~~HGT~vAgiia~~~~~~-- 53 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-----------------------ARLFFAG--PGAPAPSAHGTAVASLLAGAGAQR-- 53 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-----------------------ccccCCC--CCCCCCCCCHHHHHHHHhCCCCCC--
Confidence 7899999999999999975421 1122221 235678899999999999874221
Q ss_pred ccCCCCcceeeeccCceEEeeecccCCC---CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCC
Q 042259 225 LFGQANGTAAGMAPLAHLAIYKVCETDL---GCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301 (745)
Q Consensus 225 ~~g~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 301 (745)
.|+||+|+|+.+|++.... .++..++++||+||++.+++|||||||+... ..+..++.++.++|
T Consensus 54 ---------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~----~~l~~ai~~a~~~g 120 (239)
T cd05561 54 ---------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPN----ALLAAAVAAAAARG 120 (239)
T ss_pred ---------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC----HHHHHHHHHHHHCC
Confidence 5999999999999988321 2677889999999999999999999997543 34555666888999
Q ss_pred cEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCcc
Q 042259 302 ILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFC 380 (745)
Q Consensus 302 i~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 380 (745)
+++|+||||+|... ..+++..+++|+||+..
T Consensus 121 ilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------------------------ 152 (239)
T cd05561 121 MVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------------------------ 152 (239)
T ss_pred CEEEEecCCCCCCCCccCcccCCCceEEEeec------------------------------------------------
Confidence 99999999999764 45677888999998842
Q ss_pred CCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCC
Q 042259 381 LPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTS 460 (745)
Q Consensus 381 ~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 460 (745)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHH
Q 042259 461 SPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLS 540 (745)
Q Consensus 461 ~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 540 (745)
..+.++.||++|+.. ||+|||.+|+++.+. +.|..++||||||||||
T Consensus 153 ----------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~AaP~va 199 (239)
T cd05561 153 ----------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAAPFVT 199 (239)
T ss_pred ----------------CCCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHHHHHH
Confidence 112567899999876 999999999998776 78999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259 541 GIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG 592 (745)
Q Consensus 541 G~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 592 (745)
|++|||+|++| ++++|||++|++||+++... ..+..||||
T Consensus 200 G~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~G~G 239 (239)
T cd05561 200 AALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVFGYG 239 (239)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCcCCC
Confidence 99999999999 99999999999999987433 456689998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=383.00 Aligned_cols=334 Identities=27% Similarity=0.385 Sum_probs=259.8
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccc------------cceEEEec--c-eeeEEEEEe
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHR------------SRMVYGYR--N-VISGFAARL 93 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~v~~~y~--~-~~~g~s~~l 93 (745)
+..+.+|||.|++...... .+.|.+|+++..+.......++... ..+.+.|. . .++|+.-..
T Consensus 77 ~~~~~~YiV~f~~~~~q~~---~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~f 153 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQK---ISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYF 153 (501)
T ss_pred cccccceEEEeCCCccHHH---HHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccc
Confidence 3457899999997776555 7788888887766443322111111 11344443 3 788999999
Q ss_pred CHHHHHHhhcCCCeEEEEEccccCCCC-----CCCCCccCccCCCC-------Ccc----CCCCCCccEEEEecCCCCCC
Q 042259 94 TAEEVKAMETKSGFISARVENILEPQT-----THSPNFLGLHQNSG-------FWK----DSNLGKGVIIGVLDMGITPG 157 (745)
Q Consensus 94 ~~~~~~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~~----~~~~G~gv~VaVIDtGid~~ 157 (745)
+.+.+..++.+|-++.++++..++... .+....||+.+... .|. .-..|+||..+|+||||+..
T Consensus 154 t~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~ 233 (501)
T KOG1153|consen 154 TGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIE 233 (501)
T ss_pred ccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccc
Confidence 999999999999999999988776543 23334466655211 121 22379999999999999999
Q ss_pred CCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeec
Q 042259 158 HPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMA 237 (745)
Q Consensus 158 Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvA 237 (745)
||||.++ ..| +..+..+ ....|++||||||||+|++.. .|||
T Consensus 234 H~dFegR------a~w-----------------Ga~i~~~-~~~~D~nGHGTH~AG~I~sKt--------------~GvA 275 (501)
T KOG1153|consen 234 HPDFEGR------AIW-----------------GATIPPK-DGDEDCNGHGTHVAGLIGSKT--------------FGVA 275 (501)
T ss_pred ccccccc------eec-----------------ccccCCC-CcccccCCCcceeeeeeeccc--------------cccc
Confidence 9999986 344 1122211 355789999999999999884 7999
Q ss_pred cCceEEeeecccCCCC-CCHHHHHHHHHHHHhC---------CCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEc
Q 042259 238 PLAHLAIYKVCETDLG-CPESIVNAAIDAAVEE---------GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCS 307 (745)
Q Consensus 238 P~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~A 307 (745)
.+++|+++||+. ++| +..+++++++|++++. +..|.|||+|+..+.. +..|+..|.+.|+++++|
T Consensus 276 K~s~lvaVKVl~-~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S~a----Ln~AV~~A~~~Gi~fa~A 350 (501)
T KOG1153|consen 276 KNSNLVAVKVLR-SDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRSAA----LNMAVNAASERGIHFAVA 350 (501)
T ss_pred cccceEEEEEec-cCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcccHH----HHHHHHHHhhcCeEEEEc
Confidence 999999999999 666 9999999999999986 4689999999986544 455556899999999999
Q ss_pred cCCCCCCCCC-cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCC
Q 042259 308 AGNSGPNSST-LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLK 386 (745)
Q Consensus 308 AGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 386 (745)
|||+..+.+. .|+.+..+|||||++.
T Consensus 351 AGNe~eDAC~~SPass~~aITVGAst~----------------------------------------------------- 377 (501)
T KOG1153|consen 351 AGNEHEDACNSSPASSKKAITVGASTK----------------------------------------------------- 377 (501)
T ss_pred CCCcchhhhccCcccccccEEeccccc-----------------------------------------------------
Confidence 9999988865 4588999999999642
Q ss_pred CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEE
Q 042259 387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASI 466 (745)
Q Consensus 387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 466 (745)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHH
Q 042259 467 VFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546 (745)
Q Consensus 467 ~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 546 (745)
.+.+|.||+||++. ||.|||.+|+|+|.+.. ....+.||||||+|||||++|..
T Consensus 378 -----------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-------~at~ilSGTSMasPhvaG~aAy~ 431 (501)
T KOG1153|consen 378 -----------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-------NATAILSGTSMASPHVAGLAAYF 431 (501)
T ss_pred -----------ccchhhhcCcccee--------eeecCchhhhhhhhcCc-------cchheeecccccCcchhhhHHHh
Confidence 12789999999999 99999999999999854 46678999999999999999999
Q ss_pred HhhCCC---------CCHHHHHHHHhcccc
Q 042259 547 KSAHPD---------WSPAAIKSAIMTTAD 567 (745)
Q Consensus 547 ~q~~p~---------~s~~~ik~~L~~TA~ 567 (745)
+..+|- .+|.++|..++.-..
T Consensus 432 ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 432 LSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999882 378888888776554
|
|
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=377.78 Aligned_cols=242 Identities=35% Similarity=0.486 Sum_probs=198.9
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCC-CCCCCChhhhhhhhcccccCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP-IDNDGHGTHTASTAAGNFVNG 222 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~-~d~~gHGThVAGiiag~~~~~ 222 (745)
||+||||||||+++||+|..... ..+.++.+.++|.+..... .|..+|||||||||+|...
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~~-- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL----------------FKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYTP-- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc----------------ccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCCC--
Confidence 79999999999999999952110 1245677888888765444 6789999999999998742
Q ss_pred CcccCCCCcceeeeccCceEEeeecccCCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCh------------h
Q 042259 223 ANLFGQANGTAAGMAPLAHLAIYKVCETDLG---CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFF------------A 287 (745)
Q Consensus 223 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~------------~ 287 (745)
+.+.||||+|+|+.+|+.. ... .....++.+++|+.+.+++|||||||....... .
T Consensus 63 --------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~ 133 (261)
T cd07493 63 --------GVMVGTAPNASYYLARTED-VASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKT 133 (261)
T ss_pred --------CCEEEeCCCCEEEEEEecc-cCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccc
Confidence 2258999999999999876 222 345678999999999999999999997642211 2
Q ss_pred hHHHHHHHHHhcCCcEEEEccCCCCCC---CCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCc
Q 042259 288 DAMATAAFTASQKGILVSCSAGNSGPN---SSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQ 364 (745)
Q Consensus 288 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (745)
..+..++..+.++|+++|+||||+|.. ...++...+++|+||+..
T Consensus 134 ~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~-------------------------------- 181 (261)
T cd07493 134 SFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD-------------------------------- 181 (261)
T ss_pred hHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec--------------------------------
Confidence 346667778889999999999999987 355677889999999842
Q ss_pred eeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEE
Q 042259 365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCccc
Q 042259 445 SYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 524 (745)
..+.++.||++||+. ++++||||+|||.++++.... +
T Consensus 182 --------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------~ 218 (261)
T cd07493 182 --------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------G 218 (261)
T ss_pred --------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---------C
Confidence 112567899999998 789999999999999986655 6
Q ss_pred ceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 219 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 219 NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=384.80 Aligned_cols=221 Identities=29% Similarity=0.411 Sum_probs=164.9
Q ss_pred CCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 042259 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLG 279 (745)
Q Consensus 202 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S~G 279 (745)
.|+.+|||||||||||+..+ ...+.||||+|+|+++|+++...+ .....+++||++|++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998422 223589999999999999873233 23457999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHH-HhcCCcEEEEccCCCCCCCCCc--cc-CCCceEEEeecccccceEEEEEeCCCeeeeeeecc
Q 042259 280 SPSLPFFADAMATAAFT-ASQKGILVSCSAGNSGPNSSTL--AN-EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIF 355 (745)
Q Consensus 280 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (745)
..........+...+.+ +.++|+++|+||||+|+..++. ++ ..+++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86432111223333333 3468999999999999877654 33 57899999995311100000
Q ss_pred CCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccccc
Q 042259 356 QPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVAD 435 (745)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 435 (745)
| .
T Consensus 319 -------------y----------~------------------------------------------------------- 320 (412)
T cd04857 319 -------------Y----------S------------------------------------------------------- 320 (412)
T ss_pred -------------c----------c-------------------------------------------------------
Confidence 0 0
Q ss_pred CccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCC
Q 042259 436 NHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFS 515 (745)
Q Consensus 436 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
......+.++.||||||+. +|.+||||+|||+.|.+.-...
T Consensus 321 -------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~ 361 (412)
T cd04857 321 -------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT 361 (412)
T ss_pred -------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC
Confidence 0001134688999999998 8999999999999998752211
Q ss_pred CccCCCcccceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHhcccccc
Q 042259 516 EENITNTKSTFTMISGTSMSCPHLSGIAALLKS----AHPDWSPAAIKSAIMTTADIV 569 (745)
Q Consensus 516 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~ 569 (745)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999985 578999999999999999863
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=375.16 Aligned_cols=247 Identities=33% Similarity=0.443 Sum_probs=194.3
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccC
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 221 (745)
|+||+|||||+|||++||+|.+.-... +....... . ...+.......+.|..+|||||||||+|....
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~----~~~~~~~~---~-----~~~d~~~~~~~~~d~~~HGT~vagii~g~~~~ 68 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGW----GGGSADHD---Y-----NWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGD 68 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccccc----CCCCcccc---c-----ccccCCCCCCCCCCCCCchhhhhhheeecCCC
Confidence 899999999999999999998641100 00000000 0 00111111245667899999999999987422
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh------------CCCcEEEEccCCCCCCChhhH
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE------------EGVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------------~g~dVIn~S~G~~~~~~~~~~ 289 (745)
. + ..||||+|+|+.+|++. ..++...+++++++++++ .+++|||||||.... ....
T Consensus 69 ~--------~-~~GvAp~a~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~~~~ 136 (264)
T cd07481 69 G--------Q-QIGVAPGARWIACRALD-RNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--DNEW 136 (264)
T ss_pred C--------C-ceEECCCCeEEEEEeec-CCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--CchH
Confidence 1 1 27999999999999998 666888899999999875 789999999998753 2334
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCCCCC---cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCcee
Q 042259 290 MATAAFTASQKGILVSCSAGNSGPNSST---LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLP 366 (745)
Q Consensus 290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (745)
+..++..+.++|+++|+||||++..... ++...+++|+||+..
T Consensus 137 ~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~---------------------------------- 182 (264)
T cd07481 137 LQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD---------------------------------- 182 (264)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC----------------------------------
Confidence 4445557778999999999999876433 567788999999842
Q ss_pred eEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEch
Q 042259 367 LVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSY 446 (745)
Q Consensus 367 ~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 446 (745)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccce
Q 042259 447 AAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTF 526 (745)
Q Consensus 447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y 526 (745)
..+.++.||++||.. .+++||||+|||.+|+++.+. +.|
T Consensus 183 ------------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~---------~~~ 221 (264)
T cd07481 183 ------------------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG---------GGY 221 (264)
T ss_pred ------------------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC---------Cce
Confidence 112678899999998 589999999999999999987 789
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHhcccc
Q 042259 527 TMISGTSMSCPHLSGIAALLKSAHPD--WSPAAIKSAIMTTAD 567 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~--~s~~~ik~~L~~TA~ 567 (745)
..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 222 ~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 222 GSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=378.83 Aligned_cols=251 Identities=31% Similarity=0.434 Sum_probs=185.2
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccC---C-cccCcc--eeeeeeCCCC-------------------
Q 042259 143 KGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELE---G-ANCNNK--IIGARNFLNK------------------- 197 (745)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~---~-~~~n~k--i~~~~~~~~~------------------- 197 (745)
|+|+|||||||||++||+|++. .|....+.. . ..-|.. -+.+++|...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 232221110 0 000000 0233444320
Q ss_pred ----CCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcE
Q 042259 198 ----SEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDV 273 (745)
Q Consensus 198 ----~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dV 273 (745)
...+.+..+|||||||||+|...+. .| +.||||+|+|+.+|++. .......++++||+||+++|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~-------~g-~~GvAp~a~i~~~k~~~-~g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG-------IG-IDGVADNVKIMPLRIVP-NGDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC-------Cc-eEEECCCCEEEEEEEec-CCCcCHHHHHHHHHHHHHCCCcE
Confidence 0223457899999999999885332 22 48999999999999987 55567788999999999999999
Q ss_pred EEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCC---cc--------cCCCceEEEeecccccceEEEEE
Q 042259 274 LSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSST---LA--------NEAPWMLTVGASTIDRSIVALTQ 342 (745)
Q Consensus 274 In~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~~ 342 (745)
||||||..... ....+..++..+.++|+++|+||||+|..... ++ ...+++|+||+....
T Consensus 145 iN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (291)
T cd07483 145 INMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------- 215 (291)
T ss_pred EEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------
Confidence 99999975322 22345566668889999999999999865321 11 123556666663210
Q ss_pred eCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEE
Q 042259 343 LGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMIL 422 (745)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~ 422 (745)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceE
Q 042259 423 MNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDII 502 (745)
Q Consensus 423 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~ 502 (745)
.....++.||++|+. +|||+
T Consensus 216 -----------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~ 235 (291)
T cd07483 216 -----------------------------------------------------YENNLVANFSNYGKK-------NVDVF 235 (291)
T ss_pred -----------------------------------------------------CCcccccccCCCCCC-------ceEEE
Confidence 011146789999974 45999
Q ss_pred eCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 503 GPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 503 APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 236 APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 236 APGERIYSTTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eCCCCeEeccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999887 78999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=370.76 Aligned_cols=253 Identities=38% Similarity=0.570 Sum_probs=204.2
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCC---CCCCCCCCCCChhhhhhhhccc
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN---KSEPPIDNDGHGTHTASTAAGN 218 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~---~~~~~~d~~gHGThVAGiiag~ 218 (745)
|+||+|+|||+||+++||+|.+.... .+.+.. ......|..+|||||||+|+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----------------------cccccccccCCCCCCCCCCchHHHHHHHhcC
Confidence 89999999999999999999865221 111111 1245667889999999999998
Q ss_pred ccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhC----CCcEEEEccCCCCC-CChhhHHHH
Q 042259 219 FVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEE----GVDVLSISLGSPSL-PFFADAMAT 292 (745)
Q Consensus 219 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~S~G~~~~-~~~~~~~~~ 292 (745)
..+. .+.+.||||+|+|+.+|+++ ..+ ....++++|++|+++. +++|||||||.... ....+.+..
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~-~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~ 129 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLD-DSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQ 129 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeec-CCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHH
Confidence 5331 22358999999999999998 544 7788999999999998 99999999998753 445567777
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 293 AAFTASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 293 a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
++.++.++|+++|+||||++.... ..+...+++|+||+...+..
T Consensus 130 ~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------------- 175 (264)
T cd07487 130 AVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------------- 175 (264)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------------
Confidence 788889999999999999998775 55678899999999532110
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
....++.||++||+. +++.||||+|||++|++..+............|..++
T Consensus 176 --------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~ 227 (264)
T cd07487 176 --------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMS 227 (264)
T ss_pred --------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEecc
Confidence 001578899999998 7899999999999999976543322223337889999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 228 GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 228 GTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=370.78 Aligned_cols=260 Identities=30% Similarity=0.419 Sum_probs=200.3
Q ss_pred CCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCC----CCCCCCCCCCCChh
Q 042259 134 GFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL----NKSEPPIDNDGHGT 209 (745)
Q Consensus 134 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~----~~~~~~~d~~gHGT 209 (745)
++|..+++|+||+|+|||||||++||+|.+.........+ ...+.+. +......|..||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~gHGT 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA---------------VNGYNFVPNVGDIDNDVSVGGGHGT 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc---------------cCCcccccccCCcCCCCCCCCCCHH
Confidence 3799999999999999999999999999976111000000 0011111 11134457789999
Q ss_pred hhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhH
Q 042259 210 HTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 210 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~ 289 (745)
||||||+|+..+.....|.. .+.|+||+|+|+.+|++..........++++|+|+++.+++|||||||......+...
T Consensus 66 ~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 66 HVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 99999998754322211111 2356999999999999983334778889999999999999999999998753334455
Q ss_pred HHHHHHHHhcC-------CcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 290 MATAAFTASQK-------GILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 290 ~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
+..++..+.++ |+++|+||||++.....+++..+++|+||+.+.
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------------------- 194 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------------------- 194 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------------------
Confidence 66666677777 999999999999888777888899999998421
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc-cEEeccCCCCccCCC
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV-SILAAWPFSEENITN 521 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~ 521 (745)
.+.++.||++|+.. ||+|||. .|+++.+... ..
T Consensus 195 -----------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~---~~ 228 (273)
T cd07485 195 -----------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD---GD 228 (273)
T ss_pred -----------------------------------CCCcCccccCCCce--------EEEeCCCCcccccccccc---CC
Confidence 12567899999887 9999999 8998877531 11
Q ss_pred cccceeeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHhcc
Q 042259 522 TKSTFTMISGTSMSCPHLSGIAALLKSAHPD-WSPAAIKSAIMTT 565 (745)
Q Consensus 522 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~s~~~ik~~L~~T 565 (745)
..+.|..++|||||||+|||++|||+|++|+ ++++|||++|++|
T Consensus 229 ~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 229 GGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 2267899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=363.28 Aligned_cols=232 Identities=36% Similarity=0.526 Sum_probs=195.5
Q ss_pred CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAST 214 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGi 214 (745)
+|..+++|+||+|+|||+||+++||+|.++ +...+++... ....|..+||||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~-~~~~d~~~HGT~vAgi 72 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGG-DPDSDCNGHGTHVAGT 72 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCC-CCCCCCCccHHHHHHH
Confidence 677889999999999999999999999854 2233444443 2366889999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCC-CCCHHHHHHHHHHHHhC-----CCcEEEEccCCCCCCChhh
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL-GCPESIVNAAIDAAVEE-----GVDVLSISLGSPSLPFFAD 288 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~-----g~dVIn~S~G~~~~~~~~~ 288 (745)
|+++. .||||+|+|+.+|+++ .. ....+.++++++|+++. +++|||||||... ..
T Consensus 73 ia~~~--------------~GvAp~a~i~~~~i~~-~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~~ 133 (255)
T cd04077 73 VGGKT--------------YGVAKKANLVAVKVLD-CNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----ST 133 (255)
T ss_pred HHccc--------------cCcCCCCeEEEEEEeC-CCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----CH
Confidence 99863 6999999999999998 54 47788999999999987 4899999999875 34
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceee
Q 042259 289 AMATAAFTASQKGILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPL 367 (745)
Q Consensus 289 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (745)
.+..++.++.++|+++|+||||+|... ...+...+++|+||+...
T Consensus 134 ~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------------------------- 179 (255)
T cd04077 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------------------------- 179 (255)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------------------------
Confidence 455555678889999999999999876 456778899999998421
Q ss_pred EecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchH
Q 042259 368 VYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCccccee
Q 042259 448 AGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFT 527 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~ 527 (745)
.+.++.||++||.. |++|||.+|.++..... ..|.
T Consensus 180 ------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------~~~~ 214 (255)
T cd04077 180 ------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------TATA 214 (255)
T ss_pred ------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-------CcEE
Confidence 12467899999987 99999999999887422 6889
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhccccc
Q 042259 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADI 568 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~ 568 (745)
.++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 215 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 215 TLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=361.88 Aligned_cols=242 Identities=33% Similarity=0.498 Sum_probs=204.0
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
...+|..+ +|+||+|+|||+||+++||+|... ++...+++.+....+.|..+|||||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~~~~~d~~~HGT~v 74 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDNDSDAMDDNGHGTHV 74 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCCCCCCCCCCcHHHH
Confidence 45689988 999999999999999999998532 2334455555445577889999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHH
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMA 291 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~ 291 (745)
||||++..... ..+.|+||+|+|+.+|+++....+...+++++++++++.+++|||||||... ....+.
T Consensus 75 agii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~~~ 143 (260)
T cd07484 75 AGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTALQ 143 (260)
T ss_pred HHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHHHH
Confidence 99999874321 2258999999999999998333478889999999999999999999999874 334556
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecC
Q 042259 292 TAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPG 371 (745)
Q Consensus 292 ~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (745)
.++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 144 ~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~-------------------------------------- 185 (260)
T cd07484 144 EAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ-------------------------------------- 185 (260)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC--------------------------------------
Confidence 666678899999999999999988889999999999999421
Q ss_pred CCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHH
Q 042259 372 VKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGER 451 (745)
Q Consensus 372 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~ 451 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeecc
Q 042259 452 IKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISG 531 (745)
Q Consensus 452 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 531 (745)
.+.++.||++|+.. |++|||.+|+++.+. ..|..++|
T Consensus 186 --------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~~~~~~G 222 (260)
T cd07484 186 --------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GDYAYMSG 222 (260)
T ss_pred --------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CCEEEeee
Confidence 12567899999876 999999999998877 68999999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccc
Q 042259 532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIV 569 (745)
Q Consensus 532 TSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~ 569 (745)
||||||+|||++||+++++| +++.+||++|++||+++
T Consensus 223 TS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 223 TSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999999999999999 99999999999999865
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=369.71 Aligned_cols=258 Identities=28% Similarity=0.303 Sum_probs=186.1
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCcc
Q 042259 146 IIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANL 225 (745)
Q Consensus 146 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~ 225 (745)
+|||||||||.+||+|.+.- .....+........|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---- 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEPGWTADDLGHGTAVAGLALYGDLT---- 54 (291)
T ss_pred EEEEecCCCCCCChhhhhhh-----------------------ccccccccCCCCcCCCCCChHHHHHHHHcCccc----
Confidence 79999999999999998541 111222211112568999999999999976432
Q ss_pred cCCCCcceeeeccCceEEeeecccCCCC-----CCHHHHHHHHHHHHhCC---CcEEEEccCCCCCCCh--hhHHHHHHH
Q 042259 226 FGQANGTAAGMAPLAHLAIYKVCETDLG-----CPESIVNAAIDAAVEEG---VDVLSISLGSPSLPFF--ADAMATAAF 295 (745)
Q Consensus 226 ~g~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~S~G~~~~~~~--~~~~~~a~~ 295 (745)
.....|+||+++|+.+|++. ..+ ....++++||+|+++.+ ++|||||||....... ...+..++.
T Consensus 55 ----~~~~~gvap~~~l~~~kv~~-~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id 129 (291)
T cd04847 55 ----LPGNGLPRPGCRLESVRVLP-PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALD 129 (291)
T ss_pred ----CCCCCCcccceEEEEEEEcC-CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHH
Confidence 11237999999999999998 442 56778999999999853 4999999998753211 113333332
Q ss_pred -HHhcCCcEEEEccCCCCCCCCC------------cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 296 -TASQKGILVSCSAGNSGPNSST------------LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 296 -~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
.+.++|++||+||||++..... .++.++++|+|||.+.+......
T Consensus 130 ~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~---------------------- 187 (291)
T cd04847 130 QLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR---------------------- 187 (291)
T ss_pred HHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc----------------------
Confidence 3568999999999999987643 34667899999996533211000
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
. ..
T Consensus 188 -------s----------------------------~~------------------------------------------ 190 (291)
T cd04847 188 -------A----------------------------RY------------------------------------------ 190 (291)
T ss_pred -------c----------------------------cc------------------------------------------
Confidence 0 00
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCC------
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSE------ 516 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~------ 516 (745)
+.......+.||||||.. ++.+||||+|||++|.+..+...
T Consensus 191 -------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~ 237 (291)
T cd04847 191 -------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLS 237 (291)
T ss_pred -------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcce
Confidence 000001233499999998 89999999999999987654211
Q ss_pred ---ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 517 ---ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 517 ---~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
.........|..++|||||||||||+||||+|++|+++|++||++|++||+
T Consensus 238 ~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 238 LLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 011223368899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=356.38 Aligned_cols=249 Identities=36% Similarity=0.471 Sum_probs=186.2
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCC----CCCCCCCCCCCChhhhhhhhcccc
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL----NKSEPPIDNDGHGTHTASTAAGNF 219 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~----~~~~~~~d~~gHGThVAGiiag~~ 219 (745)
||+|||||+|||++||+|.+.-. ...+|. .......|..+|||||||||+|+.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-----------------------~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~ 57 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-----------------------QWADFDENRRISATEVFDAGGHGTHVSGTIGGGG 57 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-----------------------CceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCC
Confidence 79999999999999999986421 111121 111345677899999999999985
Q ss_pred cCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhc
Q 042259 220 VNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQ 299 (745)
Q Consensus 220 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~ 299 (745)
. .+.+.||||+++|+.+|++. ..++...+++++++|+++.+++|||||||..... .+.+...+....+
T Consensus 58 ~---------~~~~~GvAp~a~i~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~ 125 (254)
T cd07490 58 A---------KGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSN 125 (254)
T ss_pred C---------CCCEEEECCCCEEEEEEEec-CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHH
Confidence 3 12257999999999999998 6567889999999999999999999999987532 3334433334433
Q ss_pred -CCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCC
Q 042259 300 -KGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAA 378 (745)
Q Consensus 300 -~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (745)
+|+++|+||||+|.....+++..+++|+||+++.+..... +.
T Consensus 126 ~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s-------- 168 (254)
T cd07490 126 QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS-------- 168 (254)
T ss_pred cCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc--------
Confidence 6999999999999888888889999999999643221000 00
Q ss_pred ccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhc
Q 042259 379 FCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINS 458 (745)
Q Consensus 379 ~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
.+
T Consensus 169 --------------------~~---------------------------------------------------------- 170 (254)
T cd07490 169 --------------------SF---------------------------------------------------------- 170 (254)
T ss_pred --------------------CC----------------------------------------------------------
Confidence 00
Q ss_pred CCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHH
Q 042259 459 TSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPH 538 (745)
Q Consensus 459 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~ 538 (745)
.......++.+|... ....|||++|||.+|+++... ......|..++|||||||+
T Consensus 171 -------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~-----~~~~~~~~~~~GTS~AaP~ 225 (254)
T cd07490 171 -------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQG-----ANGDGQYTRLSGTSMAAPH 225 (254)
T ss_pred -------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccccC-----CCCCCCeeecccHHHHHHH
Confidence 001122233344332 457899999999999995422 1122679999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 539 LSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 539 VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||++|||+|++|++++.+||++|++||+
T Consensus 226 vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 226 VAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=361.77 Aligned_cols=257 Identities=27% Similarity=0.341 Sum_probs=189.0
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCC------ccccccccCC-----cccCcceeeeeeCCCCCCCCCCCCCChhhhh
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPA------KWKGKCELEG-----ANCNNKIIGARNFLNKSEPPIDNDGHGTHTA 212 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~------~~~~~~~~~~-----~~~n~ki~~~~~~~~~~~~~~d~~gHGThVA 212 (745)
||+|+|||||||++||+|.++....... ..++...... .+.+.+.. ...........+..+||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~HGT~vA 78 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV--PPGGFCGSGVSPSSWHGTHVA 78 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccc--cccccccCCCCCCCCCHHHHH
Confidence 7999999999999999999753211000 0000000000 00000100 000000133456789999999
Q ss_pred hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHH----------hCCCcEEEEccCCCC
Q 042259 213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV----------EEGVDVLSISLGSPS 282 (745)
Q Consensus 213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~----------~~g~dVIn~S~G~~~ 282 (745)
|||+|...++ . .+.||||+|+|+.+|+++ ..+...+++++|++|++ .++++|||||||...
T Consensus 79 giiaa~~~~~-------~-~~~GvAp~a~i~~~~v~~-~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~ 149 (285)
T cd07496 79 GTIAAVTNNG-------V-GVAGVAWGARILPVRVLG-KCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDG 149 (285)
T ss_pred HHHhCcCCCC-------C-CceeecCCCeEEEEEEec-CCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCC
Confidence 9999985421 1 247999999999999998 66668889999999998 457899999999864
Q ss_pred CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCC
Q 042259 283 LPFFADAMATAAFTASQKGILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFP 361 (745)
Q Consensus 283 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (745)
.. ...+..++..+.++|+++|+||||++... ..++...+++|+||+.+.
T Consensus 150 ~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------------------- 199 (285)
T cd07496 150 AC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------------------------- 199 (285)
T ss_pred CC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------------------------
Confidence 31 34566666688899999999999999876 667788899999998421
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccE
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPA 441 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~ 441 (745)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc----
Q 042259 442 VYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE---- 517 (745)
Q Consensus 442 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~---- 517 (745)
.+.++.||++||.. ||+|||++|.++......
T Consensus 200 ------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~ 235 (285)
T cd07496 200 ------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSN 235 (285)
T ss_pred ------------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccc
Confidence 12668899999987 999999999988765321
Q ss_pred --cCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcc
Q 042259 518 --NITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 518 --~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 565 (745)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 236 ~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 236 TGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 112223578899999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=360.82 Aligned_cols=249 Identities=24% Similarity=0.329 Sum_probs=184.6
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCC-CCCCCCCCCCChhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN-KSEPPIDNDGHGTH 210 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~-~~~~~~d~~gHGTh 210 (745)
...+|+.+++|+||+|+||||||+..|| |..+++. + +. .+.. ......|+.|||||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~-----------~~----~~~~~~~~~~~D~~gHGT~ 66 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V-----------RV----VLAPGATDPACDENGHGTG 66 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c-----------ee----ecCCCCCCCCCCCCCcchh
Confidence 4569999999999999999999999888 7644221 0 00 0111 11345678899999
Q ss_pred hhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC------
Q 042259 211 TASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP------ 284 (745)
Q Consensus 211 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~------ 284 (745)
|||++ .||||+|+|+.+|+++ . ...++++||+||++++++|||||||.....
T Consensus 67 vag~i------------------~GvAP~a~i~~vkv~~-~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 124 (298)
T cd07494 67 ESANL------------------FAIAPGAQFIGVKLGG-P---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWS 124 (298)
T ss_pred eeece------------------eEeCCCCeEEEEEccC-C---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccc
Confidence 99865 4999999999999988 3 567799999999999999999999985321
Q ss_pred ----ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCC
Q 042259 285 ----FFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDF 360 (745)
Q Consensus 285 ----~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (745)
.....+..++.++.++|++||+||||++. .+|+..|++|+||++..+..-
T Consensus 125 ~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g----------------------- 178 (298)
T cd07494 125 RSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG----------------------- 178 (298)
T ss_pred cccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC-----------------------
Confidence 12345777777889999999999999874 578999999999996432200
Q ss_pred CCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcccc
Q 042259 361 PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p 440 (745)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccC--CCCCCCCCCCccCce----------------E
Q 042259 441 AVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSS--RGPNTASPGILKPDI----------------I 502 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS--~GP~~~~~g~~KPDi----------------~ 502 (745)
.....+++ +... ..+++.|||+ +
T Consensus 179 --------------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~ 219 (298)
T cd07494 179 --------------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPV 219 (298)
T ss_pred --------------------------------------cccccccccCcccc-cCCCCccCccccccCcCCccccccccc
Confidence 00001111 1111 1246677777 4
Q ss_pred eCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccC
Q 042259 503 GPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNL 571 (745)
Q Consensus 503 APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~ 571 (745)
|||..|.++..... ........|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 220 APG~~i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 220 PPGSQLDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCCcceeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 79999876543211 011123679999999999999999999999999999999999999999997743
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=362.81 Aligned_cols=277 Identities=32% Similarity=0.393 Sum_probs=202.1
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcc
Q 042259 138 DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAG 217 (745)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag 217 (745)
.+++|+||+|||||+|||++||+|.+.... +....++++.....+.. ...|..+|||||||||+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~~~~~~~~~~~~~~~---~~~d~~~HGT~vAgiia~ 66 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTNLFHRKIVRYDSLSD---TKDDVDGHGTHVAGIIAG 66 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCccCcccEEEeeccCC---CCCCCCCCcchhheeecc
Confidence 578999999999999999999999764210 00123445555544443 233789999999999999
Q ss_pred cccCCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHH
Q 042259 218 NFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAF 295 (745)
Q Consensus 218 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~ 295 (745)
....... ...+.||||+|+|+.+|++. ..+ ....++..+++++.+.+++|||||||......+ .....++.
T Consensus 67 ~~~~~~~-----~~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~-~~~~~~~~ 139 (293)
T cd04842 67 KGNDSSS-----ISLYKGVAPKAKLYFQDIGD-TSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGY-TLLARAYD 139 (293)
T ss_pred CCcCCCc-----ccccccccccCeEEEEEeec-cCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcccc-chHHHHHH
Confidence 8644221 11358999999999999988 443 556678899999999999999999998753211 11222222
Q ss_pred HH-h-cCCcEEEEccCCCCCCCC---CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 296 TA-S-QKGILVSCSAGNSGPNSS---TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 296 ~a-~-~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
++ . .+|+++|+||||++.... ..+...+++|+||+++.+.....
T Consensus 140 ~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------------------- 188 (293)
T cd04842 140 QFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------------------- 188 (293)
T ss_pred HHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------------------------
Confidence 22 2 389999999999998765 66788999999999653321000
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
..|..
T Consensus 189 -------~~~~~-------------------------------------------------------------------- 193 (293)
T cd04842 189 -------EGGLG-------------------------------------------------------------------- 193 (293)
T ss_pred -------ccccc--------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
.....+.++.||++||+. ++++||||+|||++|+++.+............|..++
T Consensus 194 -----------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (293)
T cd04842 194 -----------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKS 248 (293)
T ss_pred -----------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecC
Confidence 011234789999999998 7899999999999999997542111122336788999
Q ss_pred cccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHhcccc
Q 042259 531 GTSMSCPHLSGIAALLKSAH-----P---DWSPAAIKSAIMTTAD 567 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~-----p---~~s~~~ik~~L~~TA~ 567 (745)
|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 249 GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 249 GTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=350.65 Aligned_cols=240 Identities=31% Similarity=0.423 Sum_probs=192.3
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCc
Q 042259 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGAN 224 (745)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~ 224 (745)
|+|||||+|||++||+|.+.. ++...+++.....+..|..+|||||||||+|+..+.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~~~-- 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNNDPTSDIDGHGTACAGVAAAVGNNG-- 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCCCCCCCCCCCHHHHHHHHHhccCCC--
Confidence 689999999999999998630 112223333332345778999999999999875321
Q ss_pred ccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC-CChhhHHHHHHHHHhc-CCc
Q 042259 225 LFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSL-PFFADAMATAAFTASQ-KGI 302 (745)
Q Consensus 225 ~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-~~~~~~~~~a~~~a~~-~Gi 302 (745)
..+.||||+|+|+.+|++.....+...++.++++|+++.+++|||||||.... ......+..++..+.+ +|+
T Consensus 58 ------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gv 131 (242)
T cd07498 58 ------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGG 131 (242)
T ss_pred ------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCe
Confidence 22589999999999999983334778889999999999999999999998653 3445667777777888 999
Q ss_pred EEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCC
Q 042259 303 LVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLP 382 (745)
Q Consensus 303 ~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 382 (745)
++|+||||+|......++..+++|+||+.+.
T Consensus 132 liv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------------------- 162 (242)
T cd07498 132 VVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------------------------------- 162 (242)
T ss_pred EEEEecCCCCCccCCCCcCCCCeEEEEEeCC-------------------------------------------------
Confidence 9999999999887777889999999999531
Q ss_pred CCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCC
Q 042259 383 ETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSP 462 (745)
Q Consensus 383 ~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 462 (745)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHH
Q 042259 463 TASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGI 542 (745)
Q Consensus 463 ~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 542 (745)
.+.+++||++||.. |++|||+++...............+.|..++|||||||+|||+
T Consensus 163 ---------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~ 219 (242)
T cd07498 163 ---------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGV 219 (242)
T ss_pred ---------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHHH
Confidence 12567899999987 9999999998885442211222336788999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHhcc
Q 042259 543 AALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 543 aALl~q~~p~~s~~~ik~~L~~T 565 (745)
+|||+|++|+|++++||++|++|
T Consensus 220 ~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 220 AALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=358.81 Aligned_cols=265 Identities=30% Similarity=0.390 Sum_probs=187.2
Q ss_pred cCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhc
Q 042259 137 KDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAA 216 (745)
Q Consensus 137 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiia 216 (745)
..+++|+||+|+|||+|||.+||+|.+... ...+|.+. ....|..+|||||||||+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-----------------------~~~~~~~~-~~~~d~~gHGT~VAgiia 57 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI-----------------------TTKSFVGG-EDVQDGHGHGTHCAGTIF 57 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc-----------------------cCcccCCC-CCCCCCCCcHHHHHHHHh
Confidence 357899999999999999999999986421 22344433 335678999999999999
Q ss_pred ccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC----------CCh
Q 042259 217 GNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSL----------PFF 286 (745)
Q Consensus 217 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~----------~~~ 286 (745)
|+..+ +...||||+|+|+.+|++..........++++|+|+++.+++|||||||.... ...
T Consensus 58 g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~ 128 (297)
T cd07480 58 GRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAF 128 (297)
T ss_pred cccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchh
Confidence 87533 22369999999999999873445777789999999999999999999998541 111
Q ss_pred hhHHHHHHHHH---------------hcCCcEEEEccCCCCCCCCCcc-----cCCCceEEEeecccccceEEEEEeCCC
Q 042259 287 ADAMATAAFTA---------------SQKGILVSCSAGNSGPNSSTLA-----NEAPWMLTVGASTIDRSIVALTQLGNQ 346 (745)
Q Consensus 287 ~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~~~ 346 (745)
...+......+ .++|+++|+||||++....... ...++.++|++..
T Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~-------------- 194 (297)
T cd07480 129 SRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG-------------- 194 (297)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC--------------
Confidence 22222222223 6899999999999986543221 1122333333311
Q ss_pred eeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 347 ETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc
Q 042259 427 LFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV 506 (745)
Q Consensus 427 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~ 506 (745)
..+....|+++.+. ...||||+|||.
T Consensus 195 --------------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG~ 220 (297)
T cd07480 195 --------------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPGV 220 (297)
T ss_pred --------------------------------------------------CCCCCCCccccCCC----CCCceEEEeCCC
Confidence 00122233333332 245789999999
Q ss_pred cEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCC
Q 042259 507 SILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADL 586 (745)
Q Consensus 507 ~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 586 (745)
+|+++.+. +.|..++|||||||+|||++||++|++|++++.+++.+|+......... . .......
T Consensus 221 ~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~-~-----~~~~~~~ 285 (297)
T cd07480 221 DIVSAAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT-Q-----FAPGLDL 285 (297)
T ss_pred CeEeecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC-C-----CCCCCCh
Confidence 99999887 7899999999999999999999999999999888888877432221000 0 0112456
Q ss_pred cccCCCCCCcc
Q 042259 587 FAVGAGHVNPS 597 (745)
Q Consensus 587 ~~~G~G~vn~~ 597 (745)
..+|+|++++.
T Consensus 286 ~~~g~G~~~~~ 296 (297)
T cd07480 286 PDRGVGLGLAP 296 (297)
T ss_pred hhcCCceeecC
Confidence 68999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=340.23 Aligned_cols=225 Identities=38% Similarity=0.584 Sum_probs=187.0
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC-CCCCCCCCChhhhhhhhcccccCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS-EPPIDNDGHGTHTASTAAGNFVNG 222 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~-~~~~d~~gHGThVAGiiag~~~~~ 222 (745)
||+|+|||+||+++||+|.+. +...++|.... ....|..+|||||||||++.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~~ 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGV 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCCCCCCCCCCCHHHHHHHHhcccCCC
Confidence 799999999999999999864 22233444332 345678899999999999875321
Q ss_pred CcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCC
Q 042259 223 ANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301 (745)
Q Consensus 223 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 301 (745)
.+.|+||+|+|+.+|+++ ..+ ....+++++++++++.+++|||||||.... ...+..++..+.++|
T Consensus 58 ---------~~~giap~a~i~~~~~~~-~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~---~~~~~~~~~~a~~~g 124 (229)
T cd07477 58 ---------GVVGVAPEADLYAVKVLN-DDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD---SPALREAIKKAYAAG 124 (229)
T ss_pred ---------ccEeeCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC---CHHHHHHHHHHHHCC
Confidence 248999999999999998 544 677899999999999999999999998642 233445555788999
Q ss_pred cEEEEccCCCCCCCCCc--ccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCc
Q 042259 302 ILVSCSAGNSGPNSSTL--ANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAF 379 (745)
Q Consensus 302 i~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
+++|+||||++...... ++..+++|+||+.+.
T Consensus 125 iliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------------------------- 158 (229)
T cd07477 125 ILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------------------------------- 158 (229)
T ss_pred CEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------------------------------
Confidence 99999999999887665 888999999999531
Q ss_pred cCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcC
Q 042259 380 CLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 380 c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHH
Q 042259 460 SSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~V 539 (745)
.+.+..||++|+.. |++|||.+|+++++. +.|..++|||||||+|
T Consensus 159 ------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~v 203 (229)
T cd07477 159 ------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN---------NDYAYLSGTSMATPHV 203 (229)
T ss_pred ------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------CCEEEEccHHHHHHHH
Confidence 12556899999876 999999999999887 7889999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHhcc
Q 042259 540 SGIAALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 540 AG~aALl~q~~p~~s~~~ik~~L~~T 565 (745)
||++|||+|++|++++.+||++|++|
T Consensus 204 ag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 204 AGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=347.82 Aligned_cols=243 Identities=22% Similarity=0.257 Sum_probs=176.9
Q ss_pred CCCccCCC-CCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 133 SGFWKDSN-LGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 133 ~~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
..+|+... .|+||+|+|||+|||.+||||.++.... .+ . ..+.|+.+|||||
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~-----------------------~~---~-~~~~d~~gHGT~V 57 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL-----------------------IS---G-LTDQADSDHGTAV 57 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc-----------------------cC---C-CCCCCCCCCcchh
Confidence 45888743 5899999999999999999998652210 00 0 1246788999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh----CCCcEEEEccCCCCCC---
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE----EGVDVLSISLGSPSLP--- 284 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~----~g~dVIn~S~G~~~~~--- 284 (745)
||||+|.. +..| +.||||+|+|+.+|++. .++++++|.+|++ .++.+||||||.....
T Consensus 58 AGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~ 122 (277)
T cd04843 58 LGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPP 122 (277)
T ss_pred heeeeeec--------CCCc-eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCccc
Confidence 99999863 1223 47999999999999985 2345666666666 3567899999986421
Q ss_pred ---ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc------------c-cCCCceEEEeecccccceEEEEEeCCCee
Q 042259 285 ---FFADAMATAAFTASQKGILVSCSAGNSGPNSSTL------------A-NEAPWMLTVGASTIDRSIVALTQLGNQET 348 (745)
Q Consensus 285 ---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~~~~~~ 348 (745)
.....+..++.++.++|+++|+||||++...... + ...+++|+|||++.+
T Consensus 123 ~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~-------------- 188 (277)
T cd04843 123 LPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST-------------- 188 (277)
T ss_pred CcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC--------------
Confidence 2334555667788899999999999998753211 1 123467777764210
Q ss_pred eeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC
Q 042259 349 YDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF 428 (745)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 428 (745)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccE
Q 042259 429 DYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSI 508 (745)
Q Consensus 429 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I 508 (745)
....++.||++||.. ||+|||++|
T Consensus 189 ------------------------------------------------~~~~~~~fSn~G~~v--------di~APG~~i 212 (277)
T cd04843 189 ------------------------------------------------TGHTRLAFSNYGSRV--------DVYGWGENV 212 (277)
T ss_pred ------------------------------------------------CCCccccccCCCCcc--------ceEcCCCCe
Confidence 001378999999987 999999999
Q ss_pred EeccCCCCc-cCCCcccceeeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHhcccc
Q 042259 509 LAAWPFSEE-NITNTKSTFTMISGTSMSCPHLSGIAALLKS----A-HPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 509 ~sa~~~~~~-~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s~~~ik~~L~~TA~ 567 (745)
+++.+.... ........|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 213 ~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 213 TTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred EecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999876331 1111123457899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=343.44 Aligned_cols=246 Identities=34% Similarity=0.479 Sum_probs=191.3
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCCCCCccccc---cccCCcccCcce---eeeeeCCCCCCCCCCCCCChhhhhhhhc
Q 042259 143 KGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGK---CELEGANCNNKI---IGARNFLNKSEPPIDNDGHGTHTASTAA 216 (745)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~---~~~~~~~~n~ki---~~~~~~~~~~~~~~d~~gHGThVAGiia 216 (745)
+||+|+|||||||++||+|.++. |... +..+........ ...++|.....++.|..+|||||||||+
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~ 74 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIG 74 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHH
Confidence 68999999999999999999752 2211 111100001111 1223343333566788999999999999
Q ss_pred ccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHH
Q 042259 217 GNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAF 295 (745)
Q Consensus 217 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~ 295 (745)
|...+. ..+.|+||+|+|+.+|++. ..+ +...+++++++++++.+++|||+|||.... ...+..++.
T Consensus 75 ~~~~~~--------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~ 142 (259)
T cd07473 75 AVGNNG--------IGIAGVAWNVKIMPLKFLG-ADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIA 142 (259)
T ss_pred CcCCCC--------CceEEeCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHH
Confidence 885332 2258999999999999998 554 888899999999999999999999998743 455666666
Q ss_pred HHhcCCcEEEEccCCCCCCC---CCccc--CCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 296 TASQKGILVSCSAGNSGPNS---STLAN--EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 296 ~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
++.++|+++|+||||+|... ..++. ..+++|+||+.+
T Consensus 143 ~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~-------------------------------------- 184 (259)
T cd07473 143 RAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD-------------------------------------- 184 (259)
T ss_pred HHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC--------------------------------------
Confidence 88899999999999998763 23443 457888888842
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
..+.++.||++||. +||++|||.++++..+. ..|..++
T Consensus 185 --------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~~~ 222 (259)
T cd07473 185 --------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGYMS 222 (259)
T ss_pred --------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEEec
Confidence 11255679999985 45999999999998776 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 223 GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 223 GTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=341.56 Aligned_cols=209 Identities=24% Similarity=0.296 Sum_probs=166.0
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC-------CCCCCCCCChhhhhhh
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS-------EPPIDNDGHGTHTAST 214 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~-------~~~~d~~gHGThVAGi 214 (745)
+++|+|||||||||++||+|.++- ...++|.... ....|..|||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i-----------------------~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI-----------------------IGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc-----------------------ccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 789999999999999999998641 1122222110 1224688999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCC------CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC---C
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL------GCPESIVNAAIDAAVEEGVDVLSISLGSPSLP---F 285 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~---~ 285 (745)
|+ |+||+|+|+.+|+++... .++...+++||+||+++|+||||||||..... .
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 96 789999999999998322 24667899999999999999999999986431 1
Q ss_pred hhhHHHHHHHHHhcCCcEEEEccCCCCCCCC-C--cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 286 FADAMATAAFTASQKGILVSCSAGNSGPNSS-T--LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 286 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
....+..++.+|.++|+++|+||||+|.... . .+...+++|+|||.+.
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~----------------------------- 171 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE----------------------------- 171 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-----------------------------
Confidence 2566777777899999999999999998764 3 3467789999999531
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCc
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNT 522 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~ 522 (745)
.+.++.||++|+.. |++|||++|+++.+.. .
T Consensus 172 -----------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~------~ 202 (247)
T cd07491 172 -----------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPP------L 202 (247)
T ss_pred -----------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCC------C
Confidence 12567899999887 9999999999987621 1
Q ss_pred ccceeeeccccchhHHHHHHHHHHHhh
Q 042259 523 KSTFTMISGTSMSCPHLSGIAALLKSA 549 (745)
Q Consensus 523 ~~~y~~~sGTSmAaP~VAG~aALl~q~ 549 (745)
.+.|..++|||||||||||++||+++.
T Consensus 203 ~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 203 SNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 167999999999999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=353.48 Aligned_cols=271 Identities=38% Similarity=0.576 Sum_probs=209.7
Q ss_pred EEEEecCCCCCCCCCCC-CCCCCCCCCccccccccCCcccCcceeeeeeCCCCC---CCCCCCCCChhhhhhhhcccccC
Q 042259 146 IIGVLDMGITPGHPSFS-DEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS---EPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 146 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~---~~~~d~~gHGThVAGiiag~~~~ 221 (745)
+|||||||||++||+|. ++ + ...++.+.+.|.++. ....|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F-----------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E-----------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c-----------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 32 1 122344466666542 445678899999999999985 2
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHH-hCCCcEEEEccCC--CC-CCChhhHHHHHHHHH
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV-EEGVDVLSISLGS--PS-LPFFADAMATAAFTA 297 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~g~dVIn~S~G~--~~-~~~~~~~~~~a~~~a 297 (745)
.+ ...+.|+||+|+|+.+|++. ..+.....+++++++++ +++++|||||||. .. .....+.+..+...+
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~-~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFD-NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSS-TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred -cc-----cccccccccccccccccccc-ccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 11 11247999999999999988 55577888999999999 8999999999987 22 223444555666688
Q ss_pred hcCCcEEEEccCCCCCCCCC---cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCC
Q 042259 298 SQKGILVSCSAGNSGPNSST---LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKN 374 (745)
Q Consensus 298 ~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (745)
.++|+++|+||||+|..... .+...+++|+||+...
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~----------------------------------------- 173 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN----------------------------------------- 173 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET-----------------------------------------
T ss_pred cccCcceeecccccccccccccccccccccccccccccc-----------------------------------------
Confidence 89999999999999877653 5666788899998421
Q ss_pred CCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHH
Q 042259 375 SSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKA 454 (745)
Q Consensus 375 ~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccc
Q 042259 455 YINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSM 534 (745)
Q Consensus 455 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
.+.++.||++|+... ++++||||+|||.+|.+.++... ...|..++||||
T Consensus 174 -----------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~------~~~~~~~~GTS~ 223 (282)
T PF00082_consen 174 -----------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD------RGSYTSFSGTSF 223 (282)
T ss_dssp -----------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE------SEEEEEEESHHH
T ss_pred -----------------------ccccccccccccccc-ccccccccccccccccccccccc------cccccccCcCCc
Confidence 115578999975542 68999999999999988887621 034788999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 535 SCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
|||+|||++|||+|++|++++.+||.+|++||+++...+ .......||||+||+++|++
T Consensus 224 Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 224 AAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999999999999886221 23456688999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=328.49 Aligned_cols=222 Identities=26% Similarity=0.362 Sum_probs=172.9
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGA 223 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 223 (745)
||+|||||||||++||+|.++... ++ .... ..+..+.....|..||||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----~~------------~~~~-~~~~~~~~~~~d~~gHGT~vAgiia~------ 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----GE------------VTID-LEIIVVSAEGGDKDGHGTACAGIIKK------ 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----cc------------cccc-cccccCCCCCCCCCCcHHHHHHHHHc------
Confidence 799999999999999999864211 00 0000 01112224556789999999999984
Q ss_pred cccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcE
Q 042259 224 NLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGIL 303 (745)
Q Consensus 224 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~ 303 (745)
.+|+++|+.+|+++....+....+++|++|+++++++|||||||..... ....+..++.++.++|++
T Consensus 57 ------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g~l 123 (222)
T cd07492 57 ------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAGGI 123 (222)
T ss_pred ------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCCCE
Confidence 4699999999999833347888999999999999999999999987532 223455566678888999
Q ss_pred EEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCC
Q 042259 304 VSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPE 383 (745)
Q Consensus 304 vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 383 (745)
+|+||||++.... .++..+++|+||+...+.
T Consensus 124 ~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------------------------ 154 (222)
T cd07492 124 IVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------------------------ 154 (222)
T ss_pred EEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------------------------------
Confidence 9999999986543 377788999998842110
Q ss_pred CCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCe
Q 042259 384 TLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPT 463 (745)
Q Consensus 384 ~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 463 (745)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHH
Q 042259 464 ASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543 (745)
Q Consensus 464 ~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 543 (745)
.. +.+++ ++|++|||.+|+++.+. +.|..++|||||||+|||++
T Consensus 155 ----------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vaG~~ 198 (222)
T cd07492 155 ----------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAPHVTGMV 198 (222)
T ss_pred ----------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHHHHHHHH
Confidence 00 11132 34999999999999887 78999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHhcccc
Q 042259 544 ALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 544 ALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||+|++|+|+++|||++|++||+
T Consensus 199 All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 199 ALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=347.65 Aligned_cols=246 Identities=24% Similarity=0.319 Sum_probs=179.4
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC--CCCC--CCCCC
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS--EPPI--DNDGH 207 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~--~~~~--d~~gH 207 (745)
...+|+.+++|+||+|+|||||||++||+|.++.... ..++|.... ..+. |..+|
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~gH 86 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE---------------------ASYDFNDNDPDPTPRYDDDNSH 86 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc---------------------ccccccCCCCCCCCcccccccc
Confidence 4569999999999999999999999999998652210 122232221 1222 77899
Q ss_pred hhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC---
Q 042259 208 GTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP--- 284 (745)
Q Consensus 208 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--- 284 (745)
||||||||+|+..... ...||||+|+|+.+|++. .. .....+..++.++.+ .++|||||||.....
T Consensus 87 GT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~ 155 (297)
T cd04059 87 GTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD-GD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTV 155 (297)
T ss_pred CcceeeEEEeecCCCc--------ccccccccceEeEEEecC-Cc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCcc
Confidence 9999999998853211 137999999999999998 43 333445556655544 469999999976422
Q ss_pred -----ChhhHHHHHHHHHhc-CCcEEEEccCCCCCCCCC----cccCCCceEEEeecccccceEEEEEeCCCeeeeeeec
Q 042259 285 -----FFADAMATAAFTASQ-KGILVSCSAGNSGPNSST----LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETI 354 (745)
Q Consensus 285 -----~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 354 (745)
...+++..++....+ +|+++|+||||+|..... .....+++|+|||++.
T Consensus 156 ~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~--------------------- 214 (297)
T cd04059 156 DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA--------------------- 214 (297)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC---------------------
Confidence 122233333222222 799999999999984322 2245678899988421
Q ss_pred cCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccc
Q 042259 355 FQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVA 434 (745)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 434 (745)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCcc-------
Q 042259 435 DNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVS------- 507 (745)
Q Consensus 435 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~------- 507 (745)
.+.++.||++|+.. +++|||..
T Consensus 215 -------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~ 243 (297)
T cd04059 215 -------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEAS 243 (297)
T ss_pred -------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCc
Confidence 12667899999987 89999987
Q ss_pred EEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 508 ILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 508 I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||.+|++||+
T Consensus 244 i~~~~~~~------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 244 IVTTDLGG------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eEeCCCCC------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66665541 0156788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=341.33 Aligned_cols=249 Identities=27% Similarity=0.368 Sum_probs=173.8
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGA 223 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 223 (745)
.|+|||||||||++||+|.++-..... .+ ...+. ..- .......+.....|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~-~~---~~~~~----~~~-~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~--- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSK-NL---VPKGG----YDG-KEAGETGDINDIVDKLGHGTAVAGQIAANGN--- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccc-cc---ccCCC----cCC-ccccccCCCCcCCCCCCcHhHHHHHHhcCCC---
Confidence 489999999999999999963211100 00 00000 000 0000001113345778999999999998632
Q ss_pred cccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC--------ChhhHHHHHH
Q 042259 224 NLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLP--------FFADAMATAA 294 (745)
Q Consensus 224 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--------~~~~~~~~a~ 294 (745)
..||||+|+|+.+|+++ ..+ ....+++++|++|++++++|||||||..... ...+.+..++
T Consensus 69 ---------~~GvAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i 138 (294)
T cd07482 69 ---------IKGVAPGIGIVSYRVFG-SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAI 138 (294)
T ss_pred ---------CceeCCCCEEEEEEeec-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHH
Confidence 15999999999999998 555 5888999999999999999999999975321 1224456666
Q ss_pred HHHhcCCcEEEEccCCCCCCCCC----------------------cccCCCceEEEeecccccceEEEEEeCCCeeeeee
Q 042259 295 FTASQKGILVSCSAGNSGPNSST----------------------LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGE 352 (745)
Q Consensus 295 ~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 352 (745)
..+.++|++||+||||+|..... .+...+++|+|||+
T Consensus 139 ~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~--------------------- 197 (294)
T cd07482 139 NYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT--------------------- 197 (294)
T ss_pred HHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee---------------------
Confidence 67788999999999999865421 12233344444442
Q ss_pred eccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc
Q 042259 353 TIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT 432 (745)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 432 (745)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEecc
Q 042259 433 VADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAW 512 (745)
Q Consensus 433 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~ 512 (745)
...+.++.||++|+.. +|++|||+++....
T Consensus 198 -------------------------------------------~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~ 227 (294)
T cd07482 198 -------------------------------------------DNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLD 227 (294)
T ss_pred -------------------------------------------CCCCCcCccccCCCCc-------ceEECCCCCccccc
Confidence 2233677899998754 49999999885322
Q ss_pred CCCC---c----------cCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHhcc
Q 042259 513 PFSE---E----------NITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSP-AAIKSAIMTT 565 (745)
Q Consensus 513 ~~~~---~----------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~-~~ik~~L~~T 565 (745)
.... . ......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 228 QYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 1111 0 01133467889999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=329.39 Aligned_cols=242 Identities=27% Similarity=0.330 Sum_probs=186.0
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhccccc
Q 042259 141 LGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFV 220 (745)
Q Consensus 141 ~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 220 (745)
+|+||+|+|||+||+.+||+|.+.........+ ..........|..+|||||||+|+|+..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~HGT~vagiiag~~~ 61 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVA-------------------VNDAGYASNGDGDSHGTHVAGVIAAARD 61 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccc-------------------cccccCCCCCCCCChHHHHHHHHhcCcC
Confidence 699999999999999999999975322100000 0000113456788999999999999853
Q ss_pred CCCcccCCCCcceeeeccCceEEeeecccCCC--CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC------------Ch
Q 042259 221 NGANLFGQANGTAAGMAPLAHLAIYKVCETDL--GCPESIVNAAIDAAVEEGVDVLSISLGSPSLP------------FF 286 (745)
Q Consensus 221 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~--g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~------------~~ 286 (745)
+ ..+.|+||+|+|+.+|+++ .. ......+.++++++++.+++|||||||..... ..
T Consensus 62 ~---------~~~~GiAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~ 131 (267)
T cd04848 62 G---------GGMHGVAPDATLYSARASA-SAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQ 131 (267)
T ss_pred C---------CCcccCCcCCEEEEEeccC-CCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhcccc
Confidence 3 2248999999999999998 44 36677889999999999999999999987522 14
Q ss_pred hhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc---------ccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCC
Q 042259 287 ADAMATAAFTASQKGILVSCSAGNSGPNSSTL---------ANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP 357 (745)
Q Consensus 287 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (745)
...+......+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---------------------- 189 (267)
T cd04848 132 GNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---------------------- 189 (267)
T ss_pred chHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC----------------------
Confidence 45566666788899999999999998764433 23457888888853211
Q ss_pred CCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCc
Q 042259 358 KDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNH 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 437 (745)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceec--ccCCCCCCCCCCCccCceEeCCccEEeccCCC
Q 042259 438 VLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAV--FSSRGPNTASPGILKPDIIGPGVSILAAWPFS 515 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
.... ||++|+.. ..++++|||.+|+++.+..
T Consensus 190 ------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~ 222 (267)
T cd04848 190 ------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG 222 (267)
T ss_pred ------------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC
Confidence 2223 48888654 2447999999999998731
Q ss_pred CccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 516 EENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 516 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
. ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 223 ~-------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 G-------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred C-------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1 67889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=328.63 Aligned_cols=368 Identities=24% Similarity=0.320 Sum_probs=267.1
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeC-----HHHHHHhhc
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLT-----AEEVKAMET 103 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~-----~~~~~~L~~ 103 (745)
.-.+.+|||.|+.... +..++..+++-|+...-.....-.....-..|-..|.-+-++-. .-++++|..
T Consensus 46 tvve~EyIv~F~~y~~------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~ 119 (1033)
T KOG4266|consen 46 TVVESEYIVRFKQYKP------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEM 119 (1033)
T ss_pred eeecceeEEEeccccc------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhc
Confidence 3356789999998876 45566666666653211100001112223345455655555443 235789999
Q ss_pred CCCeEEEEEccccCCCCC------------CC------------------CCccCcc------------CCCCCccCCCC
Q 042259 104 KSGFISARVENILEPQTT------------HS------------------PNFLGLH------------QNSGFWKDSNL 141 (745)
Q Consensus 104 ~p~V~~v~~~~~~~~~~~------------~s------------------~~~~g~~------------~~~~~~~~~~~ 141 (745)
+|.|+.|.|.+.+.+... .. +--|+-. .++-+|+.|+|
T Consensus 120 hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyT 199 (1033)
T KOG4266|consen 120 HPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYT 199 (1033)
T ss_pred CCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhcccc
Confidence 999999998876643100 00 0001100 03458999999
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccC
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 221 (745)
|++|+|||.|||+.-+||.|+.- ....++.+. ..-.|.-||||.|||+|||...
T Consensus 200 Ga~VkvAiFDTGl~~~HPHFrnv------------------------KERTNWTNE-~tLdD~lgHGTFVAGvia~~~e- 253 (1033)
T KOG4266|consen 200 GAKVKVAIFDTGLRADHPHFRNV------------------------KERTNWTNE-DTLDDNLGHGTFVAGVIAGRNE- 253 (1033)
T ss_pred CCceEEEEeecccccCCccccch------------------------hhhcCCcCc-cccccCcccceeEeeeeccchh-
Confidence 99999999999999999999831 112233333 4556789999999999998841
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCC
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 301 (745)
..|.||+++|+++||+.+..-.+++.+++|+.||+....||+|+|+|++. +++.++-..+.......
T Consensus 254 -----------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwEltAnN 320 (1033)
T KOG4266|consen 254 -----------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELTANN 320 (1033)
T ss_pred -----------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhccCc
Confidence 26999999999999998344488899999999999999999999999974 44455555555778899
Q ss_pred cEEEEccCCCCCCCCCcccCC--CceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCc
Q 042259 302 ILVSCSAGNSGPNSSTLANEA--PWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAF 379 (745)
Q Consensus 302 i~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
+++|.|+||+|+-.++..+.+ ..+|.||.
T Consensus 321 vIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------------------------------- 351 (1033)
T KOG4266|consen 321 VIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------------------------------- 351 (1033)
T ss_pred EEEEEecCCCCcceeecCCcccccceeeecc-------------------------------------------------
Confidence 999999999999877765533 33444443
Q ss_pred cCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcC
Q 042259 380 CLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 380 c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceEecCCCCCceecccCCCCCC----CCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccch
Q 042259 460 SSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT----ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMS 535 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~----~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
.+..+.+|.|||||-+. ...||+||||++-|.+|....-. .+....||||.|
T Consensus 352 ---------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTSVa 407 (1033)
T KOG4266|consen 352 ---------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTSVA 407 (1033)
T ss_pred ---------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCccc
Confidence 12335899999999753 23589999999999999877665 678899999999
Q ss_pred hHHHHHHHHHHHh----hCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCccc
Q 042259 536 CPHLSGIAALLKS----AHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVY 606 (745)
Q Consensus 536 aP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~ 606 (745)
+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-+.||+|++|+.++++--.-|
T Consensus 408 SPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syqiL~SY 470 (1033)
T KOG4266|consen 408 SPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQILKSY 470 (1033)
T ss_pred chhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHHHHHhc
Confidence 9999999999975 334468999999999999998653 3478999999999887733333
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=325.51 Aligned_cols=238 Identities=28% Similarity=0.391 Sum_probs=181.0
Q ss_pred CCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 042259 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLGSPS 282 (745)
Q Consensus 205 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 282 (745)
..||||||||++|+..+... ..||||+|+|+++++.+..-| -+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999755322 479999999999999884334 34557889999999999999999999765
Q ss_pred -CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCccc---CCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCC
Q 042259 283 -LPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN---EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPK 358 (745)
Q Consensus 283 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (745)
-+.....++..-....++|+++|.||||.|+...+++. ....+|.|||.-......
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~-------------------- 441 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ-------------------- 441 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH--------------------
Confidence 33344444444444558999999999999999877663 455888888831111000
Q ss_pred CCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcc
Q 042259 359 DFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHV 438 (745)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 438 (745)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCcc
Q 042259 439 LPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEEN 518 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~ 518 (745)
...... ..-...+..+|||||+. ||-+--.|+|||+.|.+ .|.+..
T Consensus 442 ------------a~y~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAs-VP~~tl- 487 (1304)
T KOG1114|consen 442 ------------AEYSVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIAS-VPQYTL- 487 (1304)
T ss_pred ------------hhhhhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccC-Cchhhh-
Confidence 000000 01123578899999999 89999999999999955 343221
Q ss_pred CCCcccceeeeccccchhHHHHHHHHHHH----hhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCC
Q 042259 519 ITNTKSTFTMISGTSMSCPHLSGIAALLK----SAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHV 594 (745)
Q Consensus 519 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~v 594 (745)
..-..|.|||||+|+++|.+|||+ |.+-.|||..||.+|++||+++++. .+|.||.|++
T Consensus 488 -----q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~Gml 550 (1304)
T KOG1114|consen 488 -----QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGML 550 (1304)
T ss_pred -----hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCccee
Confidence 445689999999999999999986 4577899999999999999998653 5789999999
Q ss_pred CccCCCC
Q 042259 595 NPSKAND 601 (745)
Q Consensus 595 n~~~A~~ 601 (745)
++++|.+
T Consensus 551 qVdkAyE 557 (1304)
T KOG1114|consen 551 QVDKAYE 557 (1304)
T ss_pred ehhHHHH
Confidence 9999987
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=291.23 Aligned_cols=195 Identities=22% Similarity=0.167 Sum_probs=142.5
Q ss_pred CCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHH--HhCCCcEEEEcc
Q 042259 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAA--VEEGVDVLSISL 278 (745)
Q Consensus 201 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--~~~g~dVIn~S~ 278 (745)
..|.++|||||||||||. .|++|+++|+..++.. . ....+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-K---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-C---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999987 3677999999766543 2 223456677777 567899999999
Q ss_pred CCCCCCC------hhhHHHHHHHHHhcC-CcEEEEccCCCCCCC-----CCcccCCCceEEEeecccccceEEEEEeCCC
Q 042259 279 GSPSLPF------FADAMATAAFTASQK-GILVSCSAGNSGPNS-----STLANEAPWMLTVGASTIDRSIVALTQLGNQ 346 (745)
Q Consensus 279 G~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~ 346 (745)
|+..... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9864321 223455555566555 999999999999853 234567788999999531110
Q ss_pred eeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 347 ETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc
Q 042259 427 LFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV 506 (745)
Q Consensus 427 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~ 506 (745)
....+.||++|-....++..||||+|||+
T Consensus 164 ---------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~ 192 (247)
T cd07488 164 ---------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGS 192 (247)
T ss_pred ---------------------------------------------------cceecccccccCCCCCCCCceeEEEEeee
Confidence 00234566654332236789999999999
Q ss_pred cEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHhccc
Q 042259 507 SILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSP------AAIKSAIMTTA 566 (745)
Q Consensus 507 ~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~------~~ik~~L~~TA 566 (745)
+|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|+
T Consensus 193 ~i~s--~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 193 NYNL--PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eEEC--CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 9998 33 57889999999999999999999999887764 46777776653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-31 Score=269.95 Aligned_cols=231 Identities=38% Similarity=0.541 Sum_probs=174.1
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC---CCCCCCCCChhhhhhhhcccccC
Q 042259 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS---EPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~---~~~~d~~gHGThVAGiiag~~~~ 221 (745)
|+|+|||+|++++||+|...... + ....++.... ....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGG-----G---------------DGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccC-----c---------------ccccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 68999999999999987211000 0 0011111100 23457789999999999988533
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHH-hCCCcEEEEccCCCCCCChhhHHHHHHHHHhc
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAV-EEGVDVLSISLGSPSLPFFADAMATAAFTASQ 299 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~ 299 (745)
.. ..|+||+++|+.+|+.. ..+ .....+++++++++ ..+++|||||||..... ....+...+..+.+
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~-~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~ 129 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLD-GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALA 129 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEec-CCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHH
Confidence 21 16999999999999998 444 67888999999999 89999999999987532 23344555556667
Q ss_pred C-CcEEEEccCCCCCCCC---CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCC
Q 042259 300 K-GILVSCSAGNSGPNSS---TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNS 375 (745)
Q Consensus 300 ~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (745)
+ |+++|+||||.+.... ..++..+++|+||+.+.+.
T Consensus 130 ~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------------------- 169 (241)
T cd00306 130 KLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------------------- 169 (241)
T ss_pred hcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------------------
Confidence 6 9999999999998876 4778899999999953211
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAY 455 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEecceEecCCCCCcee-cccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccc
Q 042259 456 INSTSSPTASIVFKGTVIGKKSAPEVA-VFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSM 534 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
... .++++| .|||+.|||.++.+.... ....+..++||||
T Consensus 170 ------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-------~~~~~~~~~GTS~ 210 (241)
T cd00306 170 ------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-------GGGGYATLSGTSM 210 (241)
T ss_pred ------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-------CCCCeEeeccHHH
Confidence 111 344444 466999999999875111 1268899999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHhcc
Q 042259 535 SCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 565 (745)
|||+|||++||++|++|++++.++|++|++|
T Consensus 211 Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 211 AAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-24 Score=240.66 Aligned_cols=272 Identities=34% Similarity=0.521 Sum_probs=196.0
Q ss_pred CCCCccC--CCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCC--CCCCCCC
Q 042259 132 NSGFWKD--SNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP--PIDNDGH 207 (745)
Q Consensus 132 ~~~~~~~--~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~--~~d~~gH 207 (745)
....|.. +.+|+||+|+|||+||+..||+|.+.... .++|...... ..|..+|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~d~~~h 185 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-----------------------GGDFVDGDPEPPFLDDNGH 185 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc-----------------------ccccccCCCCCCCCCCCCC
Confidence 3457777 89999999999999999999999865211 1344443333 4689999
Q ss_pred hhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCC--CcEEEEccCCCCCC
Q 042259 208 GTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEG--VDVLSISLGSPSLP 284 (745)
Q Consensus 208 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g--~dVIn~S~G~~~~~ 284 (745)
||||+|++++....+ .....|++|+++++.++++....+ ....+++++++++++.+ +++||||+|.....
T Consensus 186 Gt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~ 258 (508)
T COG1404 186 GTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSD 258 (508)
T ss_pred cceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccc
Confidence 999999999842111 112479999999999999983314 67778899999999999 99999999985111
Q ss_pred ChhhHHHHHHHHHhcCC-cEEEEccCCCCCCCC----CcccCC--CceEEEeecccccceEEEEEeCCCeeeeeeeccCC
Q 042259 285 FFADAMATAAFTASQKG-ILVSCSAGNSGPNSS----TLANEA--PWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP 357 (745)
Q Consensus 285 ~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (745)
.....+..++..+...| +++|+|+||.+.... .++... +.+++||+..
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------------------------- 313 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------------------------- 313 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC-------------------------
Confidence 22333444444666666 999999999997753 122222 2555555531
Q ss_pred CCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCc
Q 042259 358 KDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNH 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 437 (745)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEe-----cc
Q 042259 438 VLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILA-----AW 512 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~s-----a~ 512 (745)
..+..+.||++|+.. +.+++|||.+|.+ ++
T Consensus 314 ---------------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~ 348 (508)
T COG1404 314 ---------------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTL 348 (508)
T ss_pred ---------------------------------------CCCccccccccCCCC------CcceeCCCccccccccceee
Confidence 123678899999752 2299999999988 55
Q ss_pred CCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCC
Q 042259 513 PFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHP-DWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGA 591 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 591 (745)
++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++... . .......++.
T Consensus 349 ~~~~-------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~ 410 (508)
T COG1404 349 PGDG-------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT-P----------LSGVDNLVGG 410 (508)
T ss_pred eCCc-------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc-c----------CCcccccccc
Confidence 5410 2499999999999999999999999999 899999999988888730 0 0123345666
Q ss_pred CCCCccCCCC
Q 042259 592 GHVNPSKAND 601 (745)
Q Consensus 592 G~vn~~~A~~ 601 (745)
|..+...+..
T Consensus 411 ~~~~~~~~~~ 420 (508)
T COG1404 411 GLANLDAAAT 420 (508)
T ss_pred Cccccccccc
Confidence 6666555444
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=204.14 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=108.1
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCC----C--CC
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPI----D--ND 205 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~----d--~~ 205 (745)
...+|..|++||+|+++|+|.||||-|||++.+ ..--..++|...+..|. | .+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssndpfpyprytddwfn 208 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSNDPFPYPRYTDDWFN 208 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCCCCCCCcccchhhh
Confidence 345899999999999999999999999999843 12223556665442222 2 47
Q ss_pred CChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC
Q 042259 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLP 284 (745)
Q Consensus 206 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~ 284 (745)
.|||.|||-+++...++. .| .|||.+.++..+|+++ ..+..|+++|-..--+ ...+|.+-|||.....
T Consensus 209 shgtrcagev~aardngi--cg------vgvaydskvagirmld---qpymtdlieansmghep~kihiysaswgptddg 277 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLD---QPYMTDLIEANSMGHEPSKIHIYSASWGPTDDG 277 (629)
T ss_pred ccCccccceeeeeccCCc--ee------eeeeeccccceeeecC---CchhhhhhhhcccCCCCceEEEEecccCcCCCC
Confidence 899999998876653321 11 6999999999999998 3345555554221111 2468999999976421
Q ss_pred ----ChhhHHHHHHHHHh-----cCCcEEEEccCCCCCCC-CCcc--cCCCceEEEee
Q 042259 285 ----FFADAMATAAFTAS-----QKGILVSCSAGNSGPNS-STLA--NEAPWMLTVGA 330 (745)
Q Consensus 285 ----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~-~~~~--~~~p~vitVga 330 (745)
...++..+++.+-+ ..|-++|.|.|..|... +... +.+-|.|++-+
T Consensus 278 ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 278 KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 12233333333333 35779999999988653 2222 34456565544
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-17 Score=176.91 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=81.3
Q ss_pred eeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCC---ChhhHHHHHHHHHhcCCcEEEE
Q 042259 233 AAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEE---GVDVLSISLGSPSLP---FFADAMATAAFTASQKGILVSC 306 (745)
Q Consensus 233 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---g~dVIn~S~G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 306 (745)
..||||+|+|+.|++.+ .. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.++..+||+||+
T Consensus 83 ~~gvAP~a~i~~~~~~~-~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 83 AGAIAPGANITLYFAPG-TV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHhccCCCeEEEEEECC-cC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 57999999999999987 32 45677888888887 999999999987532 2446677777788999999999
Q ss_pred ccCCCCCCCC-----------CcccCCCceEEEeecccccc
Q 042259 307 SAGNSGPNSS-----------TLANEAPWMLTVGASTIDRS 336 (745)
Q Consensus 307 AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~~ 336 (745)
|+||+|.... .+++.+|++++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35688999999999876543
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=114.22 Aligned_cols=118 Identities=31% Similarity=0.443 Sum_probs=93.6
Q ss_pred CCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccc-cCccc
Q 042259 361 PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVA-DNHVL 439 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~-~~~~~ 439 (745)
.....+++|.+. |...++...+++|||+|| +|+.|.+.+|..+++++||.|+|++|+......... ....+
T Consensus 24 ~~~~~~lv~~g~-------g~~~d~~~~dv~GkIvL~-~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL-------GTPEDFEGKDVKGKIALI-QRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC-------CchhccCCCCccceEEEE-ECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 345678888654 344456667899999999 999999999999999999999999988754222211 13578
Q ss_pred cEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCC
Q 042259 440 PAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT 491 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 491 (745)
|++.|+..+|..|++++.+ +++|.+..+.. ..+.+.++.||||||.-
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 66777776655 56778899999999973
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=108.82 Aligned_cols=121 Identities=50% Similarity=0.785 Sum_probs=98.0
Q ss_pred EEeCCCeeeeeeeccCCCCCCCCceeeEecCC--CCCCCCccCCCCCCCCcccceEEEEeeCCCc-chhhhhhhHhhcCc
Q 042259 341 TQLGNQETYDGETIFQPKDFPSKQLPLVYPGV--KNSSAAFCLPETLKSIDVKGKVVLCQRGGGT-QRIRKGKDVKDAGG 417 (745)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~-~~~~~~~~~~~~Ga 417 (745)
++++|+.++.|+++++... ..+++++... .......|.+...+..+++|||||| +|+.| .+.+|..+++++||
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc-~~~~~~~~~~k~~~~~~~GA 77 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC-DRGGNTSRVAKGDAVKAAGG 77 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEE-eCCCCccHHHHHHHHHHcCC
Confidence 5789999999999996543 4567776333 1234578988888889999999999 99999 99999999999999
Q ss_pred eEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEE
Q 042259 418 AAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS 465 (745)
Q Consensus 418 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 465 (745)
.|+|++++.............+|.+.|+..+|..|++|+++..+++++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999886554333333568999999999999999999987766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-09 Score=89.16 Aligned_cols=82 Identities=20% Similarity=0.460 Sum_probs=58.5
Q ss_pred eEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEc
Q 042259 34 TYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVE 113 (745)
Q Consensus 34 ~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~ 113 (745)
+|||.|+++..... ....+.+++.+++.+..... .....++.+.|+..|+||+++++++++++|+++|+|++|+|+
T Consensus 1 ~YIV~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDASAAS--SFSSHKSWQASILKSALKSA--SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTSTHHC--HHHHHHHHHH----HHHHTH---TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCCcch--hHHHHHHHHHHHHhhhhhhh--cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 69999999865332 24667777776655421100 145789999999999999999999999999999999999999
Q ss_pred cccCCC
Q 042259 114 NILEPQ 119 (745)
Q Consensus 114 ~~~~~~ 119 (745)
+.++++
T Consensus 77 ~~v~l~ 82 (82)
T PF05922_consen 77 QVVSLH 82 (82)
T ss_dssp CEEEE-
T ss_pred ceEecC
Confidence 988653
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=109.18 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=98.4
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCC------CCCCCC
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSE------PPIDND 205 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~------~~~d~~ 205 (745)
....|..+++|+++.|+|.|.|+...||++... ....+.+++..... +.....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDNDPEPRCDGTNEN 80 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCCCcccccCCCCcc
Confidence 456899999999999999999999999999843 12233344433221 112347
Q ss_pred CChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC
Q 042259 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLP 284 (745)
Q Consensus 206 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~ 284 (745)
.|||-||+-.+....+. --..|+++++++..++++. + ...+...+...... ..+++-..|||.....
T Consensus 81 ~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~---~-~v~~~~~~~~~~~~~~~~di~scsw~pddd~ 148 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLA---G-CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDG 148 (431)
T ss_pred ccCCCCCcccccccCCC--------cCCCCcccCccccceeeee---e-ecccceecccccCCCCCceeecCcCCcccCC
Confidence 89999999999875211 1137999999999999987 1 11122222222222 3578999999976421
Q ss_pred ----ChhhHHHHHHHH-----HhcCCcEEEEccCCCCCCCCC
Q 042259 285 ----FFADAMATAAFT-----ASQKGILVSCSAGNSGPNSST 317 (745)
Q Consensus 285 ----~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~~ 317 (745)
........+... ...+|-+.|+|.||.|.....
T Consensus 149 ~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~ 190 (431)
T KOG3525|consen 149 KTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDS 190 (431)
T ss_pred CcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccc
Confidence 111112222222 236789999999998876543
|
|
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-08 Score=86.56 Aligned_cols=92 Identities=18% Similarity=0.287 Sum_probs=74.5
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCc--ccc--ccCc
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDY--GTV--ADNH 437 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~--~~~--~~~~ 437 (745)
...+|++.... ..+|....+.+.+++|||+|+ +||.|.|.+|..+++++||.++|++|+..... ... ....
T Consensus 19 ~~~~~~~~~~~----~~gC~~~~~~~~~l~gkIaLV-~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 19 ATLLPLRNLTS----SVLCSASDVPPGGLKGKAVVV-MRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred CcceeeecCCC----cCCCCccccCccccCCeEEEE-ECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 34566666553 477998888888999999999 99999999999999999999999999875311 111 2456
Q ss_pred cccEEEEchHhHHHHHHHHhc
Q 042259 438 VLPAVYVSYAAGERIKAYINS 458 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~ 458 (745)
.||+++|+..+|+.|++.+..
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999988763
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=85.35 Aligned_cols=95 Identities=25% Similarity=0.307 Sum_probs=75.3
Q ss_pred ceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc--c--c-ccCcc
Q 042259 364 QLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG--T--V-ADNHV 438 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~--~-~~~~~ 438 (745)
.-++++.... ..++|.+..+...+++|||+|| +||.|.+.+|..+++++||.++|++|+...... . . .....
T Consensus 18 ~~~lv~~~~~--~~~gC~~~~~~~~~~~GkIvLv-~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 18 TAPLVPLDPE--RPAGCDASDYDGLDVKGAIVLV-DRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred EEEEEEcCCC--CccCCCccccCCCCcCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 3456664422 2478998888888999999999 999999999999999999999999987653211 1 1 13457
Q ss_pred ccEEEEchHhHHHHHHHHhcCCC
Q 042259 439 LPAVYVSYAAGERIKAYINSTSS 461 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~ 461 (745)
+|.++|+..+|+.|++++..+.+
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCE
Confidence 99999999999999999977654
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=85.77 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=71.3
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-cccc-------ccCccccEEEEchHh
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-YGTV-------ADNHVLPAVYVSYAA 448 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~-------~~~~~~p~~~i~~~~ 448 (745)
.++|.+.. +..+++|+|+|+ +||.|.|.+|..+++++||.++|+||+.... .... .....||+++|+..+
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv-~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALI-ERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 46798643 356899999999 9999999999999999999999999886542 1111 123579999999999
Q ss_pred HHHHHHHHhcCCCCeEEE
Q 042259 449 GERIKAYINSTSSPTASI 466 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i 466 (745)
|+.|++.+..+..+++.|
T Consensus 99 G~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 99 GYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHcCCceEEee
Confidence 999999999887776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=88.44 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=72.4
Q ss_pred CCCccCCCCC--CCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc----cccCccccEEEEchHhH
Q 042259 376 SAAFCLPETL--KSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT----VADNHVLPAVYVSYAAG 449 (745)
Q Consensus 376 ~~~~c~~~~~--~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~i~~~~g 449 (745)
..++|.+... .+.++.|+|+|+ +||.|.|.+|..+++++||.++|+||+...+... ......+|.++|+..+|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV-~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALI-QRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 4578988776 567899999999 9999999999999999999999999987622111 12235789999999999
Q ss_pred HHHHHHHhcCCCCeEE
Q 042259 450 ERIKAYINSTSSPTAS 465 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~ 465 (745)
+.|++++..+.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999877655443
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.5e-08 Score=84.45 Aligned_cols=79 Identities=32% Similarity=0.492 Sum_probs=63.9
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCC----CCccccccCccccEEEEchHhHHHH
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDEL----FDYGTVADNHVLPAVYVSYAAGERI 452 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
...|.+......+++|||||| +||.|.|.+|..+++++||.|+|++|... ...........+|+++|+..+|+.|
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv-~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLV-ERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEE-ESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred cccccccccCCccccceEEEE-ecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345777788889999999999 99999999999999999999999999211 1122234468999999999999999
Q ss_pred HHHH
Q 042259 453 KAYI 456 (745)
Q Consensus 453 ~~~~ 456 (745)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-07 Score=84.57 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=67.4
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-----ccc----c---ccCccccEEEE
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-----YGT----V---ADNHVLPAVYV 444 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~----~---~~~~~~p~~~i 444 (745)
.+.|.+... +.+++|||+|+ +||.|.|.+|..+++++||.++|++|+.... ... . .+...||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv-~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIM-ERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEE-ECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 467976544 66799999999 9999999999999999999999999875432 110 0 12458999999
Q ss_pred chHhHHHHHHHHhcCCCC
Q 042259 445 SYAAGERIKAYINSTSSP 462 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~ 462 (745)
+..+|+.|++.+......
T Consensus 105 ~~~dG~~L~~~l~~~~~~ 122 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNV 122 (126)
T ss_pred EHHHHHHHHHHHHhCCce
Confidence 999999999999876543
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-07 Score=83.10 Aligned_cols=86 Identities=24% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccc----ccCccccEEEEchHhHHH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV----ADNHVLPAVYVSYAAGER 451 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 451 (745)
..+.|.+.... .+++|||+|| +|+.|.+.+|..+++++||.|+|++|+........ .....+|++.|+.++|..
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~-~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALI-DRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEE-ECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 35679887763 4699999999 99999999999999999999999998866421111 123579999999999999
Q ss_pred HHHHHhcCCCCe
Q 042259 452 IKAYINSTSSPT 463 (745)
Q Consensus 452 l~~~~~~~~~~~ 463 (745)
|++|+..+...+
T Consensus 104 l~~~l~~g~~v~ 115 (118)
T cd04818 104 LKAALAAGGTVT 115 (118)
T ss_pred HHHHHhcCCcEE
Confidence 999998765443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-07 Score=79.36 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=58.0
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEEC--------CCC----------e-EEEEEcCeEEEeeCCceEEEEEEEEeccC--
Q 042259 659 SSPQTYNRTVTNVGQDNSFYTHHIIV--------PEG----------V-KIIVQPDKISFTEKNQKATFSVTFIRDQN-- 717 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~v~~~~~~~-- 717 (745)
....+++++|+|.|+...+|++++.. ..| . .+...+..+++++ |++++++|+|+.+..
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~ 85 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLD 85 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGH
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCC
Confidence 34588999999999999999998771 011 1 5777888999988 999999999999762
Q ss_pred -CCCCeEEEEEEEEc-Cc-eEEEeeEE
Q 042259 718 -SNASSVQGYLSWVS-AT-HTVRSPIA 741 (745)
Q Consensus 718 -~~~~~~~G~~~~~~-~~-~~v~~P~~ 741 (745)
..+.+++|+|.+++ +. ..+++||.
T Consensus 86 ~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 33589999999994 44 49999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-07 Score=81.64 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCccCCCCCC--CC----cccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc-----------cccCccc
Q 042259 377 AAFCLPETLK--SI----DVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT-----------VADNHVL 439 (745)
Q Consensus 377 ~~~c~~~~~~--~~----~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----------~~~~~~~ 439 (745)
.++|.+.... +. ...++|+|+ +||.|.|.+|..+++++||.++|++|+....... ..+...+
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv-~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLL-DRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEE-ECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 4678765442 22 378899999 9999999999999999999999999986542211 1123469
Q ss_pred cEEEEchHhHHHHHHHHhcCCCCeE
Q 042259 440 PAVYVSYAAGERIKAYINSTSSPTA 464 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~ 464 (745)
|+++|+..+|+.|++.+..+...++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999987665443
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=82.77 Aligned_cols=85 Identities=22% Similarity=0.196 Sum_probs=68.5
Q ss_pred CccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc--c--cccCccccEEEEchHhHHHHH
Q 042259 378 AFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG--T--VADNHVLPAVYVSYAAGERIK 453 (745)
Q Consensus 378 ~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~ 453 (745)
..|.+..+ +.+++|||+|+ +||.|.|.+|..+++++||.++|+||+...+.. . ..+...+|.+.|+..+|+.|+
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv-~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 32 LGCDAADY-PASVAGNIALI-ERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCcccC-CcCCCCEEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 46876555 35799999999 999999999999999999999999988733221 1 123467999999999999999
Q ss_pred HHHhcCCCCeE
Q 042259 454 AYINSTSSPTA 464 (745)
Q Consensus 454 ~~~~~~~~~~~ 464 (745)
+.+.++.+.++
T Consensus 110 ~~l~~g~~v~~ 120 (122)
T cd02130 110 AALANGGEVSA 120 (122)
T ss_pred HHHhcCCcEEE
Confidence 99988765444
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-07 Score=82.93 Aligned_cols=84 Identities=31% Similarity=0.389 Sum_probs=69.4
Q ss_pred CCccCCCC--CCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc--cc----ccCccccEEEEchHh
Q 042259 377 AAFCLPET--LKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG--TV----ADNHVLPAVYVSYAA 448 (745)
Q Consensus 377 ~~~c~~~~--~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~----~~~~~~p~~~i~~~~ 448 (745)
...|.++. +...+++|||+|| +|+.|.+.+|..+++++||.|+|++++...... .. .....+|.+.|+..+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~-~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLV-RRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred eEEEecCcccccCCCccceEEEE-ECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 45687776 6778899999999 999999999999999999999999988753211 11 134679999999999
Q ss_pred HHHHHHHHhcCCC
Q 042259 449 GERIKAYINSTSS 461 (745)
Q Consensus 449 g~~l~~~~~~~~~ 461 (745)
|..|++++.+..+
T Consensus 109 g~~l~~~~~~~~~ 121 (126)
T cd00538 109 GEALLSLLEAGKT 121 (126)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987554
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=102.42 Aligned_cols=161 Identities=22% Similarity=0.238 Sum_probs=89.7
Q ss_pred CccCCCCCCccEEEEec-CCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLD-MGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAS 213 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVID-tGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAG 213 (745)
+++.+.+|||++||||| -|-.+...|+. ..|++..-. ...+.++.. . .-..+|++|=+.
T Consensus 220 l~~~g~tGkG~tIaIid~yG~p~~~~dl~--------~Fd~~~Gip--~~~~~~V~~----i------g~g~~~~~~g~~ 279 (1174)
T COG4934 220 LYESGATGKGETIAIIDAYGDPYNNQDLY--------SFDQQYGIP--NPILSRVTY----I------GPGIGSGTGGAE 279 (1174)
T ss_pred cccCCCCCCCcEEEEEeccCCcccHHHHH--------HHHHhhCCC--CCCceEEEE----e------CCCCCCCCCccc
Confidence 55668889999999999 56555444433 112111100 011122211 0 024567776543
Q ss_pred hhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC-----CCChh
Q 042259 214 TAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGV-DVLSISLGSPS-----LPFFA 287 (745)
Q Consensus 214 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~-dVIn~S~G~~~-----~~~~~ 287 (745)
=+ .+.-....-+||+|+|..|-.-. .....+..|+.+....-. -++-.||+... .+.+-
T Consensus 280 E~-----------sLDVE~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~ 344 (1174)
T COG4934 280 ET-----------SLDVEWSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYA 344 (1174)
T ss_pred cc-----------eeehhhhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHH
Confidence 11 11111236899999999886632 112222223322222111 34445666532 22244
Q ss_pred hHHHHHHHHHhcCCcEEEEccCCCCCCCCC--------cccCCCceEEEee
Q 042259 288 DAMATAAFTASQKGILVSCSAGNSGPNSST--------LANEAPWMLTVGA 330 (745)
Q Consensus 288 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVga 330 (745)
+.+..-...+..+|+.+++|+|.+|....+ .++++|++++||.
T Consensus 345 ~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 345 DLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 556666667889999999999999866543 4568999999998
|
|
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=79.01 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=70.7
Q ss_pred eeeEecCCC-CCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc-ccccCccccEE
Q 042259 365 LPLVYPGVK-NSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG-TVADNHVLPAV 442 (745)
Q Consensus 365 ~~~~~~~~~-~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~ 442 (745)
+|++..... ....++|.+...+..+++|||+|+ +||.|.|.+|..+++++||.++|+||+...... ...+...+|.+
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv-~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLV-RRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEE-ECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 555444333 235678987766656899999999 999999999999999999999999988654321 12223345656
Q ss_pred EEchHhHHHHHHHHhcCCC
Q 042259 443 YVSYAAGERIKAYINSTSS 461 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~ 461 (745)
.+ ..+|+.|++.+..+..
T Consensus 107 ~~-~~~G~~l~~~l~~G~~ 124 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSN 124 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCe
Confidence 55 9999999999976654
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.9e-07 Score=82.60 Aligned_cols=83 Identities=23% Similarity=0.392 Sum_probs=66.9
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccc------ccCccccEEEEchHhHH
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV------ADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~ 450 (745)
.+.|.+.. .+++|+|+|+ +||.|.|.+|..+++++||.++|+||+........ .....||+++|+..+|+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV-~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 48 LDCCSPST---SKLSGSIALV-ERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred ccccCCCC---cccCCeEEEE-ECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 46798654 3789999999 99999999999999999999999998764321111 11358999999999999
Q ss_pred HHHHHHhcCCCCe
Q 042259 451 RIKAYINSTSSPT 463 (745)
Q Consensus 451 ~l~~~~~~~~~~~ 463 (745)
.|++.+..+...+
T Consensus 124 ~L~~~l~~g~~Vt 136 (139)
T cd02132 124 ALNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHHcCCcEE
Confidence 9999998766543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=79.19 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-ccc-----cccCccccEEEEchHhH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-YGT-----VADNHVLPAVYVSYAAG 449 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~-----~~~~~~~p~~~i~~~~g 449 (745)
..++|.+. +..+++|||+|+ +||.|.|.+|..+++++||.++|++|+.... ... ......+|+++++..++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV-~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALV-LRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 35789765 568899999999 9999999999999999999999999876532 111 12345899999999999
Q ss_pred HHHHHHHhc
Q 042259 450 ERIKAYINS 458 (745)
Q Consensus 450 ~~l~~~~~~ 458 (745)
+.|+.++..
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999988754
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.6e-07 Score=81.50 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=61.0
Q ss_pred CCCCCcccceEEEEeeCCCcc-----hhhhhhhHhhcCceEEEEecCCC-CCc--ccccc---CccccEEEEchHhHHHH
Q 042259 384 TLKSIDVKGKVVLCQRGGGTQ-----RIRKGKDVKDAGGAAMILMNDEL-FDY--GTVAD---NHVLPAVYVSYAAGERI 452 (745)
Q Consensus 384 ~~~~~~~~g~ivl~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~-~~~--~~~~~---~~~~p~~~i~~~~g~~l 452 (745)
++.+.+++|||+|+ +||.|. |.+|.++++++||.|+|+||+.. .+. ....+ ...+|++.|+..+|+.|
T Consensus 49 d~~~~d~~GkIaLI-~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 49 SYICGGMAGKICLI-ERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred cccCCCcCccEEEE-ECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHH
Confidence 34556899999999 999999 99999999999999999999972 221 12222 45899999999999999
Q ss_pred HHHHhc
Q 042259 453 KAYINS 458 (745)
Q Consensus 453 ~~~~~~ 458 (745)
++.+..
T Consensus 128 ~~~l~~ 133 (139)
T cd04817 128 LAALGQ 133 (139)
T ss_pred HHHhcC
Confidence 998854
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=81.01 Aligned_cols=84 Identities=26% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCccCCCCCCC---CcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc-cc-----cCccccEEEEchH
Q 042259 377 AAFCLPETLKS---IDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT-VA-----DNHVLPAVYVSYA 447 (745)
Q Consensus 377 ~~~c~~~~~~~---~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~-----~~~~~p~~~i~~~ 447 (745)
.++|.+....+ .++.|+|+|+ +||.|.|.+|..+++++||.++|++|+....... .. ....||+++|+..
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV-~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLI-RRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEE-ECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 46798766544 7899999999 9999999999999999999999999986532221 11 2458999999999
Q ss_pred hHHHHHHHHhcCCC
Q 042259 448 AGERIKAYINSTSS 461 (745)
Q Consensus 448 ~g~~l~~~~~~~~~ 461 (745)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.3e-05 Score=68.69 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=69.1
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCc--chhhhhhhHhhcCceEEEEecCCCCCccc-----c-
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGT--QRIRKGKDVKDAGGAAMILMNDELFDYGT-----V- 433 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~- 433 (745)
....+++|.+.. .+.++...+++|||+++ +++.| .+.+|..++.+.||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~G-------~~~d~~~~~v~GkIvlv-~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYG-------LPKDFDGLDLEGKIAVV-KRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCC-------CHHHcCCCCCCCeEEEE-EcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 346778886643 12234456799999999 99999 88999999999999999999865432211 1
Q ss_pred -ccCccccEEEEchHhHHHHHHHHhcCC
Q 042259 434 -ADNHVLPAVYVSYAAGERIKAYINSTS 460 (745)
Q Consensus 434 -~~~~~~p~~~i~~~~g~~l~~~~~~~~ 460 (745)
.....+|++.|+.+||+.|.+.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 224579999999999999999987643
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00047 Score=63.89 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=60.7
Q ss_pred CCCcccceEEEEeeCCCc------chhhh-------hhhHhhcCceEEEEecCCC-------CCcccc-ccCccccEEEE
Q 042259 386 KSIDVKGKVVLCQRGGGT------QRIRK-------GKDVKDAGGAAMILMNDEL-------FDYGTV-ADNHVLPAVYV 444 (745)
Q Consensus 386 ~~~~~~g~ivl~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~-------~~~~~~-~~~~~~p~~~i 444 (745)
...+++|||+++ .++.| .|..| ...+.++||.++|++|... .+.... .....+|++.|
T Consensus 34 ~~~~v~GKIvlv-~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 34 PAGAVKGKIVFF-NQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred chhhcCCeEEEe-cCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 456899999999 99999 88888 6899999999999998532 121111 22356999999
Q ss_pred chHhHHHHHHHHhcCCCCe
Q 042259 445 SYAAGERIKAYINSTSSPT 463 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~ 463 (745)
+.+|+..|...+..+...+
T Consensus 113 s~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 113 SVEDADMLERLAARGKPIR 131 (134)
T ss_pred chhcHHHHHHHHhCCCCeE
Confidence 9999999999988765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0064 Score=58.81 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-cc-----------------c-----------c--c-
Q 042259 387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-YG-----------------T-----------V--A- 434 (745)
Q Consensus 387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-----------------~-----------~--~- 434 (745)
..+++|||+|+ ++|.|.+.+|..+++++||+|+|+|++.... .. . . .
T Consensus 51 gv~v~GkIvLv-r~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLV-RAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEE-ECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 56789999999 9999999999999999999999999874210 00 0 0 0
Q ss_pred --cCccccEEEEchHhHHHHHHHHhcC
Q 042259 435 --DNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 435 --~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
....||++-|+..++..|+..+...
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999998654
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.071 Score=46.70 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEEcCceEEEee
Q 042259 660 SPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVSATHTVRSP 739 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~~~~~v~~P 739 (745)
...+.+++|+|.|..+..|++.........++++|..-.+.+ |++.++.|+|.+.... ..+.+.|.+.-++..+.+|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~--g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL--GDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC--ceEEEEEEEEECCeEEEEE
Confidence 357778899999999999998764423445677777767777 9999999999975543 4688999998777788888
Q ss_pred EEEEe
Q 042259 740 IAIGF 744 (745)
Q Consensus 740 ~~~~~ 744 (745)
+-...
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 86653
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0084 Score=55.68 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=52.1
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCc------------------chhhhhhhHhhcCceEEEEe
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGT------------------QRIRKGKDVKDAGGAAMILM 423 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 423 (745)
....++||.+.+-. ...|...++...|++|||||+ .++.| .+..|...++++||.|+|++
T Consensus 19 ~~~aelVfvGyGi~-a~~~~~dDYag~DVkGKIVlv-~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK-APELSWDDYAGLDVKGKVVVV-LRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC-CCCCChhhcCCCCCCCcEEEE-EcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34577888775432 356888889899999999999 88877 46679999999999999999
Q ss_pred cCCC
Q 042259 424 NDEL 427 (745)
Q Consensus 424 n~~~ 427 (745)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9854
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.011 Score=54.64 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=50.7
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcc------------hhhhhhhHhhcCceEEEEecCCC
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQ------------RIRKGKDVKDAGGAAMILMNDEL 427 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 427 (745)
..-++||.+.+.. ...|...++...+++|||||+ .++.|. +..|.+++.+.||.|+|++++..
T Consensus 22 v~gelVfvGyG~~-~~~~~~~Dy~~iDVkGKIVlv-~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 22 VEAPLVFVGYGLV-APELGHDDYAGLDVKGKIVVV-LSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ceEeEEEecCCcC-ccCcCHhhccCCCCCCeEEEE-EcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3567777765432 467888888888999999999 888763 66899999999999999998754
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.027 Score=61.04 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=65.0
Q ss_pred CCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC------CccccccCccccEEEEchHhHHHHHHHHhcC
Q 042259 386 KSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF------DYGTVADNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 386 ~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
....+++|++++ .||.|.|.+|.+.++++||.++++.|+..+ ++......-.||.++++.++++.+.....++
T Consensus 90 ~~~kl~~~~~~v-~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 90 LQSKLSGKVALV-FRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CCccccceeEEE-ecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 345689999999 999999999999999999999999999532 2233344678999999999999999877666
Q ss_pred CCCeEEE
Q 042259 460 SSPTASI 466 (745)
Q Consensus 460 ~~~~~~i 466 (745)
.+.++.+
T Consensus 169 ~~V~~~l 175 (541)
T KOG2442|consen 169 DNVELAL 175 (541)
T ss_pred CeEEEEE
Confidence 6554444
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.023 Score=53.43 Aligned_cols=63 Identities=27% Similarity=0.324 Sum_probs=49.5
Q ss_pred ceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCC------------------cchhhhhhhHhhcCceEEEEecC
Q 042259 364 QLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGG------------------TQRIRKGKDVKDAGGAAMILMND 425 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~n~ 425 (745)
.-++||.+.+. ....|...++...+++|||||+ .|+. |.+..|..++.+.||.|+|++++
T Consensus 21 tg~lVfvGyGi-~~~~~~~~Dy~giDVkGKIVlv-~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 21 TAPVVFAGYGI-TAPELGYDDYAGLDVKGKIVLV-LRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred eEeEEEecCCc-CccccchhhccCCCCCCeEEEE-EcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 45777776442 2456877778888999999999 7663 56678999999999999999987
Q ss_pred CCC
Q 042259 426 ELF 428 (745)
Q Consensus 426 ~~~ 428 (745)
...
T Consensus 99 ~~~ 101 (151)
T cd04822 99 PNS 101 (151)
T ss_pred Ccc
Confidence 543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.047 Score=54.69 Aligned_cols=55 Identities=40% Similarity=0.549 Sum_probs=43.9
Q ss_pred ceeeEecCCCCCCCCccCCCCC-----CCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 364 QLPLVYPGVKNSSAAFCLPETL-----KSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
.-++||.+. |...++ ...+++|||+|+ .+|.+.+.+|..+++.+||+|+|+|++.
T Consensus 46 ~g~lVyvny-------G~~~D~~~L~~~gvdv~GKIvLv-r~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 46 TAELVYANY-------GSPEDFEYLEDLGIDVKGKIVIA-RYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred eEEEEEcCC-------CcHHHHHHHhhcCCCCCCeEEEE-ECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 566777663 333333 256899999999 9999988999999999999999999764
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.11 Score=43.08 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=37.6
Q ss_pred ccEEEEEEEEecCCCC-eeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCC
Q 042259 660 SPQTYNRTVTNVGQDN-SFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNS 718 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~ 718 (745)
...+++++|+|.|... ...++++..|.|-.+...|..+.--++|++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 3678999999999764 5588888999999888888776533459999999999998753
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.038 Score=50.65 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=74.4
Q ss_pred ceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc----------c
Q 042259 364 QLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT----------V 433 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----------~ 433 (745)
.++++... ...+|... .+.-...+.++++ +||+|+|..|..++.++||.++|+.++....... .
T Consensus 65 ~~~lV~ad----Pp~aC~el-rN~~f~~d~vaL~-eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 65 NLELVLAD----PPHACEEL-RNEIFAPDSVALM-ERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred CcceeecC----ChhHHHHH-hhcccCCCcEEEE-ecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 35555544 34567542 3445678899999 9999999999999999999999998765433221 2
Q ss_pred ccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecc
Q 042259 434 ADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKG 470 (745)
Q Consensus 434 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
.+...+|++++-..+|..++.-+..-..+-+.|..+-
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 3468999999999999888887777766666665554
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.066 Score=49.77 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=35.9
Q ss_pred CcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 388 IDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 388 ~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
-+++|||+++ +.|...+..|.++++..||+|+|+|.+.
T Consensus 37 V~v~GkIvi~-RyG~~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALL-KLGQAPLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEE-eccCcchHHHHHHHHHCCCeEEEEecCh
Confidence 5799999999 9999999999999999999999999874
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.99 Score=40.65 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=41.7
Q ss_pred cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCC
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNS 718 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~ 718 (745)
...++++|+|....+.+|++++..++|+++......+++.+ |++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 56788999999999999999999988999966557888877 9999999999998764
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.2 Score=40.39 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=55.5
Q ss_pred ceeeecCC-ccEEEEEEEEecCCCCeeEEEEEEC----CCCe--------------------EEEEEcCeEEEeeCCceE
Q 042259 652 SFSVKLGS-SPQTYNRTVTNVGQDNSFYTHHIIV----PEGV--------------------KIIVQPDKISFTEKNQKA 706 (745)
Q Consensus 652 s~~~~~~~-~~~~~~~tv~n~~~~~~ty~~~~~~----~~g~--------------------~v~v~p~~~~~~~~g~~~ 706 (745)
.|.+.... ..++++++|+|.++.+.+|.+++.. ..|+ -+++ |..+++++ +|++
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~-~~sk 95 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPP-NESK 95 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECC-CCEE
Confidence 35555443 3799999999999999999987642 1110 0122 44477877 9999
Q ss_pred EEEEEEEeccCCCCCeEEEEEEEE
Q 042259 707 TFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 707 ~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
+++++++.+...-...+-|.|.++
T Consensus 96 ~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 96 TVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999999876557788888775
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.57 Score=49.85 Aligned_cols=80 Identities=25% Similarity=0.222 Sum_probs=61.6
Q ss_pred CccCCCCCC---CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccc----ccCccccEEEEchHhHH
Q 042259 378 AFCLPETLK---SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV----ADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 378 ~~c~~~~~~---~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~ 450 (745)
++|.+.... .......++++ .||+|.|.+|..+++.+|..++|+||+........ .....++.++++...|+
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI-~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALI-RRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred cccCccccCccCCCCCcceEEEE-EccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 456554331 34456778999 99999999999999999999999999876654332 23567889999999999
Q ss_pred HHHHHHhc
Q 042259 451 RIKAYINS 458 (745)
Q Consensus 451 ~l~~~~~~ 458 (745)
.|..|...
T Consensus 142 ~l~~~~~~ 149 (348)
T KOG4628|consen 142 LLSSYAGR 149 (348)
T ss_pred HHHHhhcc
Confidence 99887543
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.2 Score=40.56 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=42.2
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcch-------------------hhhhhhHhhcCceEEEEe
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQR-------------------IRKGKDVKDAGGAAMILM 423 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~ 423 (745)
..-++||.+.+-.. ..-...++...|++||||++ .++...+ ..|...+.+.||.|+|++
T Consensus 22 ~~~elVFvGyGi~a-pe~~~dDy~g~DVkGKiVvv-l~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVA-PEYGWDDYKGLDVKGKTVVI-LVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccC-cccCcccccCCCcCCcEEEE-EcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 45667776654221 11223356778999999999 6544322 248899999999999999
Q ss_pred cCC
Q 042259 424 NDE 426 (745)
Q Consensus 424 n~~ 426 (745)
.+.
T Consensus 100 ~~~ 102 (157)
T cd04821 100 HET 102 (157)
T ss_pred eCC
Confidence 764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=84.06 E-value=9.8 Score=34.28 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=47.1
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEEC---CC----CeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEE
Q 042259 660 SPQTYNRTVTNVGQDNSFYTHHIIV---PE----GVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~ty~~~~~~---~~----g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
+..+.+++|+|.++.+..+.+.+.. .. .-.+-++|..+.+.+ |+++++.| +.....+.+.-..=+|.+.
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 3457789999999987777777653 11 124678999999988 99999999 7755433333334445555
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.34 E-value=13 Score=41.02 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=57.5
Q ss_pred ccEEEEEEEEecCCCCee-EEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEE
Q 042259 660 SPQTYNRTVTNVGQDNSF-YTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
..++....+.|.|+.+-| -++++..|.|-.+.|.|.++---++|+++++++|++++......-|+=.|.-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 368888999999987644 67999999999999999876555569999999999999875545666666655
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.26 E-value=22 Score=39.29 Aligned_cols=70 Identities=11% Similarity=0.253 Sum_probs=51.9
Q ss_pred cEEEEEEEEecCCCCeeEEEEEE-CCCCeEEEEEcC-----eEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEEc
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHII-VPEGVKIIVQPD-----KISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVS 731 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~ 731 (745)
+..+++++.|.|....+|.+++. .|.|....+.-. ++.+.+ ||+++++|.+.++....-..|.=.|+-+.
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 67889999999999999999998 788766655433 345656 99999999999987633233333444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 745 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-119 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-104 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-15 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 4e-14 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 3e-12 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 1e-07 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 3e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 3e-07 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 3e-07 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 3e-07 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 3e-07 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-07 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 4e-07 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 5e-07 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 8e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 8e-07 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 1e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 1e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 1e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 1e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 1e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-06 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 1e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 1e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 2e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 2e-06 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-06 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-05 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 2e-06 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 2e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 2e-06 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 2e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 3e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 4e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 4e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 4e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 5e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 5e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 8e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 8e-06 | ||
| 1thm_A | 279 | Crystal Structure Of Thermitase At 1.4 Angstroms Re | 1e-05 | ||
| 1thm_A | 279 | Crystal Structure Of Thermitase At 1.4 Angstroms Re | 8e-05 | ||
| 1tec_E | 279 | Crystallographic Refinement By Incorporation Of Mol | 1e-05 | ||
| 1tec_E | 279 | Crystallographic Refinement By Incorporation Of Mol | 4e-04 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 2e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 3e-05 | ||
| 2wv7_A | 329 | Intracellular Subtilisin Precursor From B. Clausii | 3e-05 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 4e-05 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 7e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 4e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 4e-05 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 4e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 5e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 5e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 5e-05 | ||
| 2xrm_A | 311 | Processed Intracellular Subtilisin From B. Clausii | 5e-05 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 9e-05 | ||
| 2x8j_B | 327 | Intracellular Subtilisin Precursor From B. Clausii | 1e-04 | ||
| 2x8j_A | 327 | Intracellular Subtilisin Precursor From B. Clausii | 1e-04 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 1e-04 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 2e-04 | ||
| 1pek_E | 279 | Structure Of The Complex Of Proteinase K With A Sub | 6e-04 | ||
| 3prk_E | 279 | Inhibition Of Proteinase K By Methoxysuccinyl-Ala-A | 6e-04 | ||
| 1r6v_A | 671 | Crystal Structure Of Fervidolysin From Fervidobacte | 8e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279 | Back alignment and structure |
|
| >pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 329 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii Length = 311 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii Length = 327 | Back alignment and structure |
|
| >pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 327 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
| >pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A Substrate-analogue Hexa-peptide Inhibitor At 2.2 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|3PRK|E Chain E, Inhibition Of Proteinase K By Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An X-Ray Study At 2.2-Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium Pennivorans, A Keratinolytic Enzyme Related To Subtilisin Length = 671 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 662 bits (1709), Expect = 0.0
Identities = 267/642 (41%), Positives = 359/642 (55%), Gaps = 44/642 (6%)
Query: 120 TTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCEL 179
TT S +FLG + S + +++GVLD GI P PSF DEG PPP KWKG CE
Sbjct: 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 180 -EGANCNNKIIGARNFLNKSEP-------PIDNDGHGTHTASTAAGNFVNGANLFGQANG 231
CN KIIGAR++ P D +GHGTHTASTAAG V+ ANL+G G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 232 TAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPS-LPFFADAM 290
TA G PLA +A YKVC D GC ++ + AA D A+ +GVD++S+S+G + +F DA+
Sbjct: 119 TARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 177
Query: 291 ATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYD 350
A +F A ++GIL S SAGN GPN T A+ +PW+L+V AST+DR V Q+GN +++
Sbjct: 178 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237
Query: 351 GETIFQPKDFPSKQLPLVY------PGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQ 404
G +I F ++ PLV G S++ FC +++ +KGK+V+C+ G
Sbjct: 238 GVSINT---FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPH 294
Query: 405 RIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTA 464
K GAA +LM D AD++ LP+ + YI S SP A
Sbjct: 295 EF-----FKSLDGAAGVLMTSNTRD---YADSYPLPSSVLDPNDLLATLRYIYSIRSPGA 346
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAW-PFSEENITNTK 523
+I FK T I SAP V FSSRGPN A+ ++KPDI GPGV ILAAW +
Sbjct: 347 TI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRN 405
Query: 524 STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLP 583
+ F +ISGTSMSCPH++GIA +K+ +P WSPAAIKSA+MTTA +N P
Sbjct: 406 TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN--------P 457
Query: 584 ADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSI 643
FA G+GHVNP KA PGLVY+ + DYV++LCG+ Y Q + I C+ ++
Sbjct: 458 QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTG 517
Query: 644 AEAELNYPSFSVKLGSS---PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFT 700
+LNYPSF + + S Q +NRT+T+V S Y I P+G+ I V P+ +SF
Sbjct: 518 RVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFN 577
Query: 701 EKNQKATFSVTFIRDQNSNASSVQGYLSWVSATHTVRSPIAI 742
+ +F++T + V L W H VRSPI I
Sbjct: 578 GLGDRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITI 617
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 656 bits (1693), Expect = 0.0
Identities = 244/652 (37%), Positives = 352/652 (53%), Gaps = 39/652 (5%)
Query: 120 TTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCE- 178
TTH+ +FL L+ +SG W S LG+ VI+ VLD GI P SF D+GMP P +WKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 179 ---LEGANCNNKIIGARNFLNKSEP-----------PIDNDGHGTHTASTAAGNFVNGAN 224
+ CN K+IGA F D DGHGTH AS AGNF G +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 225 LFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP 284
FG A GTA G+AP A LA+YK + G S + AA+D AV +GVD++SIS G +P
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISISYGYRFIP 179
Query: 285 FFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLG 344
+ DA++ A+F A KG+LVS SAGN GP +L N +PW+L V + DR+ LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 345 NQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQ 404
N G ++F + F + P++Y S + + + +V+C G
Sbjct: 240 NGLKIRGWSLFPARAF-VRDSPVIYNK--TLSDCSSEELLSQVENPENTIVICDDNGDFS 296
Query: 405 RIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTA 464
+ + + A A I ++++ + P V V+ G+++ Y+ ++ +PTA
Sbjct: 297 --DQMRIITRARLKAAIFISED--PGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTA 352
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAW-----PFSEENI 519
+I F+ T + K AP VA S+RGP+ + GI KPDI+ PGV ILAA+ S
Sbjct: 353 TITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTN 412
Query: 520 TNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNH 579
+ + + SGTSM+ PH +GIAA+LK+AHP+WSP+AI+SA+MTTAD ++ KPI +
Sbjct: 413 ILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDS 472
Query: 580 -HLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCS 638
+ A +GAGHV+P++A DPGLVY+ + DYV LC N+T++Q + I +
Sbjct: 473 DNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHN 532
Query: 639 KVSSIAEAELNYPSFSV------KLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIV 692
S A+LNYPSF Q + RTVTNVG+ + Y + P+ I V
Sbjct: 533 C--SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISV 590
Query: 693 QPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVSA--THTVRSPIAI 742
P + F KN+K ++++T + S G ++WV H+VRSPI
Sbjct: 591 SPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVT 642
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 489 bits (1259), Expect = e-161
Identities = 124/632 (19%), Positives = 223/632 (35%), Gaps = 74/632 (11%)
Query: 131 QNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCE--------LEGA 182
Q + + G G ++ V+D G H ++ + K E G
Sbjct: 5 QVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGE 64
Query: 183 NCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHL 242
N+K+ ++ +K + HGTH + +GN A + G P A L
Sbjct: 65 WVNDKVAYYHDY-SKDGKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQL 119
Query: 243 AIYKVC-ETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPF--FADAMATAAFTASQ 299
+ +V L AI A+ G V+++S G+ +L + D A A
Sbjct: 120 LLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKS 179
Query: 300 KGILVSCSAGNSGPNSSTLA---NEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQ 356
KG+ + SAGN + P VG S + + + +
Sbjct: 180 KGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVK 239
Query: 357 PKDFPSKQLPLVY------PGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGK 410
D K++P++ + + A + DVKGK+ L +RG K
Sbjct: 240 TADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDID-FKDKIA 298
Query: 411 DVKDAGGAAMILMNDELFDY-GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFK 469
K AG +++ +++ + + + +PA ++S G +K T + A+
Sbjct: 299 KAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNATP--- 355
Query: 470 GTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMI 529
V+ S +++ FSS G + G +KPDI PG IL++ + + +
Sbjct: 356 -KVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVA---------NNKYAKL 403
Query: 530 SGTSMSCPHLSGIAALLKSAHPDWSPAA--------IKSAIMTTADIVNLEGKPIMNHHL 581
SGTSMS P ++GI LL+ + P K +M++A + E +
Sbjct: 404 SGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK------ 457
Query: 582 LPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVS 641
GAG V+ KA+ + ++ D N + E V S
Sbjct: 458 AYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFE----VTVNVHNKS 511
Query: 642 SIAEAELNYPSFSVKLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTE 701
EL Y + +V+ + V + S+ I ++ V D F++
Sbjct: 512 D-KPQELYYQA-TVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSK 569
Query: 702 KNQKATFSVTFIRDQNSNASSVQGYLSWVSAT 733
+ F ++G++ +
Sbjct: 570 DLLAQMKNGYF----------LEGFVRFKQDP 591
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-35
Identities = 91/484 (18%), Positives = 152/484 (31%), Gaps = 102/484 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP- 200
I ++D G H + + N
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNA-----------------------NNVTGTNNSGTGNWY 57
Query: 201 -PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPL--AHLAIYKVCETDLGCPES 257
P +N+ HGTH A T A AN N G+ P A++ I KV S
Sbjct: 58 QPGNNNAHGTHVAGTIAAI----AN-----NEGVVGVMPNQNANIHIVKVFNEAGWGYSS 108
Query: 258 IVNAAIDAAVE-EGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS 316
+ AAID V G +V+++SLG A T G+L+ +AGN+G +S
Sbjct: 109 SLVAAIDTCVNSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSY 165
Query: 317 TLANEAPWMLTVGASTIDRSIVALTQLGNQ------------ETYDGETIFQPKDFPSKQ 364
+ +++V A + A +Q +Q GE + D
Sbjct: 166 SYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEG--RLADITIGG 223
Query: 365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMN 424
GV + + G + G A I +
Sbjct: 224 QSYFSNGV----VPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV 279
Query: 425 DELFDYGTVADNHVLPAVYVSYAAGERIKAYINS-------TSSPTASIVFKGTVIGKKS 477
+ + + G+ A + I Y NS A+ +
Sbjct: 280 ERVGNQGSSYPEINSTK-ACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDR 338
Query: 478 APEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCP 537
A +A+ + G +T ++ + +GTSM+ P
Sbjct: 339 ATGLALKAKLGQST----------------TVSNQG---------NQDYEYYNGTSMATP 373
Query: 538 HLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPS 597
H+SG+A L+ S HP+ S + +++A+ TAD +++ G+ G G +N
Sbjct: 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN-----------QTGYGMINAV 422
Query: 598 KAND 601
A
Sbjct: 423 AAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-32
Identities = 69/273 (25%), Positives = 106/273 (38%), Gaps = 49/273 (17%)
Query: 84 NVISGFAARLTAEEVKAMETKSGFISARVENI-------------LEPQTTHSPNFLGLH 130
++I A ++ +++ + + + +T
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 131 QNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIG 190
+ W G G+ IG++D GI HP K+IG
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQG-----------------------KVIG 163
Query: 191 ARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCET 250
+F+N P D++GHGTH AS AAG NG GMAP A L KV
Sbjct: 164 WVDFVNGKTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNG 216
Query: 251 DLGCPESIVNAAIDAAVEE----GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSC 306
S + +D AV+ G+ V+++SLGS D+++ A A G++V
Sbjct: 217 QGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVV 276
Query: 307 SAGNSGPNSSTLAN--EAPWMLTVGASTIDRSI 337
+AGNSGPN T+ + A ++TVGA I
Sbjct: 277 AAGNSGPNKYTVGSPAAASKVITVGAVDKYDVI 309
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-24
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ FSSRGP + LKP+++ PG I+AA +T GT+M+ PH+
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHV 365
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
+GIAALL AHP W+P +K+A++ TAD ++ I + A GAG VN KA
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETAD--IVKPDEIAD--------IAYGAGRVNAYKA 415
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 5e-30
Identities = 53/206 (25%), Positives = 78/206 (37%), Gaps = 41/206 (19%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
G V + VLD GI HP ++G +F+
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDL-------------------------NVVGGASFV 51
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
D +GHGTH A T A G G+AP L KV +
Sbjct: 52 AGEAYNTDGNGHGTHVAGTVAAL--------DNTTGV-LGVAPSVSLYAVKVLNSSGSGS 102
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
S + + I+ A G+DV+++SLG S + AM A A +G++V +AGNSG +
Sbjct: 103 YSGIVSGIEWATTNGMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSG 159
Query: 316 STLANE----APWMLTVGASTIDRSI 337
ST ++ VGA + +
Sbjct: 160 STNTIGYPAKYDSVIAVGAVDSNSNR 185
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 31/120 (25%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
A FSS G + +++ PG + + +P +T+ ++GTSM+ PH+
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTYP---------TNTYATLNGTSMASPHV 226
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
+G AAL+ S HP+ S + +++ + +TA +L + + G G +N A
Sbjct: 227 AGAAALILSKHPNLSASQVRNRLSSTAT------------YLGSSFYY--GKGLINVEAA 272
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 53/208 (25%), Positives = 79/208 (37%), Gaps = 44/208 (21%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
G V + V+D GI HP K+ G + +
Sbjct: 17 HSQGYTGSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASMV 51
Query: 196 -NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTA-AGMAPLAHLAIYKVCETDLG 253
+++ P DN+ HGTH A T A N G+AP A L KV D
Sbjct: 52 PSETNPFQDNNSHGTHVAGTVAA----------LNNSIGVLGVAPSASLYAVKVLGADGS 101
Query: 254 CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGP 313
S + I+ A+ +DV+++SLG PS + A+ A A G++V +AGN G
Sbjct: 102 GQYSWIINGIEWAIANNMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGT 158
Query: 314 NSSTLANE----APWMLTVGASTIDRSI 337
+ S+ P ++ VGA
Sbjct: 159 SGSSSTVGYPGKYPSVIAVGAVDSSNQR 186
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 31/120 (25%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ A FSS GP + D++ PGVSI + P + + +GTSM+ PH+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLP---------GNKYGAYNGTSMASPHV 227
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
+G AAL+ S HP+W+ ++S++ T + D F G G +N A
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKL--------------GDSFYYGKGLINVQAA 273
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 35/202 (17%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W + G G I ++D G+ HP + K++G +F+
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFV 59
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
+ P + +GHGTH A AA N G AG AP A + +V +
Sbjct: 60 DNDSTPQNGNGHGTHCAGIAAA---VTNNSTG-----IAGTAPKASILAVRVLDNSGSGT 111
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
+ V I A ++G V+S+SLG + A A KG +V +AGN+G +
Sbjct: 112 WTAVANGITYAADQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTA 168
Query: 316 STLANEAPWMLTVGASTIDRSI 337
+ V ++ + +
Sbjct: 169 PNYPAYYSNAIAVASTDQNDNK 190
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 32/120 (26%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ FS+ G D+ PG SI + +P ST+ +SGTSM+ PH+
Sbjct: 189 NKSSFSTYGSWV--------DVAAPGSSIYSTYP---------TSTYASLSGTSMATPHV 231
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
+G+A LL S S + I++AI TAD ++ G G VN KA
Sbjct: 232 AGVAGLLASQGR--SASNIRAAIENTADKISGTGT-------------YWAKGRVNAYKA 276
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 40/203 (19%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
G GV + VLD GI+ HP I G +F+
Sbjct: 17 HNRGLTGSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFV 50
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTA-AGMAPLAHLAIYKVCETDLGC 254
D +GHGTH A T A N G+AP A L KV
Sbjct: 51 PGEPSTQDGNGHGTHVAGTIA----------ALNNSIGVLGVAPSAELYAVKVLGASGSG 100
Query: 255 PESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPN 314
S + ++ A G+ V ++SLGSPS + + A +A+ +G+LV ++GNSG
Sbjct: 101 SVSSIAQGLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 315 SSTLANEAPWMLTVGASTIDRSI 337
S + + VGA+ + +
Sbjct: 158 SISYPARYANAMAVGATDQNNNR 180
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 31/120 (25%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
A FS G DI+ PGV++ + +P ST+ ++GTSM+ PH+
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYP---------GSTYASLNGTSMATPHV 221
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
+G AAL+K +P WS I++ + TA + G+G VN A
Sbjct: 222 AGAAALVKQKNPSWSNVQIRNHLKNTATSL--------------GSTNLYGSGLVNAEAA 267
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 51/210 (24%), Positives = 79/210 (37%), Gaps = 44/210 (20%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
+ G G+ I VLD G+ HP + + ++F
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN-----------------------NVEQCKDFT 55
Query: 196 NKSEP----PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
+ P D +GHGTH A TA + + G+AP A L YKV
Sbjct: 56 GATTPINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDS 108
Query: 252 LGCPESIVNAAIDAAVEEGV-----DVLSISLGSPSLPFFADAMATAAFTASQKGILVSC 306
+ AAI A ++ ++S+SLGS + +++A A KG+L+
Sbjct: 109 GSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVA 165
Query: 307 SAGNSGPNSSTLANEA--PWMLTVGASTID 334
+AGNSG + T+ P + V A
Sbjct: 166 AAGNSGYSQGTIGYPGALPNAIAVAALENV 195
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 8e-22
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 474 GKKSAPEVAVFSSRGP----NTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMI 529
+ VA +SSRG +I PG S+ + W + I
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY---------NGGYNTI 246
Query: 530 SGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAV 589
SGTSM+ PH+SG+AA + + +P S ++S + A V+++G + D +A
Sbjct: 247 SGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG----GYGAAIGDDYAS 302
Query: 590 GAGHVN 595
G G
Sbjct: 303 GFGFAR 308
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 34/202 (16%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W + G I V+D G+ HP K+I +F+
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDG-----------------------KVIKGYDFV 60
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
+ P+D + HGTH A AA N G AGMAP + + + +
Sbjct: 61 DNDYDPMDLNNHGTHVAGIAAA---ETNNATG-----IAGMAPNTRILAVRALDRNGSGT 112
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
S + AI A + G +V+++SLG + A A KG +V +AGN+G ++
Sbjct: 113 LSDIADAIIYAADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSST 169
Query: 316 STLANEAPWMLTVGASTIDRSI 337
+ ++ VGA +
Sbjct: 170 TFEPASYENVIAVGAVDQYDRL 191
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 32/120 (26%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+A FS+ G D++ PGV I++ + + +SGTSM+ PH+
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVSTIT---------GNRYAYMSGTSMASPHV 232
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
+G+AALL S + I+ AI TAD ++ G G +N A
Sbjct: 233 AGLAALLASQGR--NNIEIRQAIEQTADKISGTGT-------------YFKYGRINSYNA 277
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 3e-26
Identities = 49/343 (14%), Positives = 114/343 (33%), Gaps = 47/343 (13%)
Query: 15 SPTIAVTSNGIENDANGLQTYI-VHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAH 73
+ NG +G + + + ++++ L ++ + +
Sbjct: 80 KKKVTPDENGNIKGLSGNSLKLSPELMALNTDPEKAVRVGLKSFSDLLPSKVRNNIVAQA 139
Query: 74 HRSRMVYGYRNVISGFAARLTAEEVK------AMETKSGFISARVENILEPQTTHSPNF- 126
++ + + ++ E + + + ++ LE ++ +
Sbjct: 140 KLKHWDKPHKTATANASRKIVEFESQNPGEASKLPWDKKILKENLDFELEMLNSYEKVYG 199
Query: 127 -LGLHQNSGFWKDSNLGKGVI----IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEG 181
+ + + ++ ++ G LD + G S + E
Sbjct: 200 DIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNV------------- 246
Query: 182 ANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAH 241
+ + + + N E + HGTH +S A+GN ++ G+AP A
Sbjct: 247 DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAK 297
Query: 242 LAIYKVCETDLGCPESI--VNAAIDAAVE-----EGVDVLSISLGSPSLPFFADAMATAA 294
+ + + LG E+ + A+ +E +DV+++S G + + +
Sbjct: 298 IVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELM 357
Query: 295 FTASQK-GILVSCSAGNSGPNSSTLAN----EAPWMLTVGAST 332
K G++ SAGN GP T+ P ++ VGA
Sbjct: 358 NEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-24
Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 42/236 (17%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
V ++SR P G + PG +I + T S +++GTSM+ PH+
Sbjct: 418 NVYTWTSRDP--CIDGGQGVTVCAPGGAIASVPQ-------FTMSKSQLMNGTSMAAPHV 468
Query: 540 SGIAALLKSA----HPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVN 595
+G ALL S + ++SP +IK AI TA L D FA G G +N
Sbjct: 469 AGAVALLISGLKQQNIEYSPYSIKRAISVTAT------------KLGYVDPFAQGHGLLN 516
Query: 596 PSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSV 655
KA + + S D+ +R+ + +GI + N ++V
Sbjct: 517 VEKAFEHLTEHRQSKDNMLRF--SVRVGNNADKGIHLRQG----------VQRNSIDYNV 564
Query: 656 KLGSSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVT 711
+ P YN + +F ++ + + + + +V
Sbjct: 565 YI--EPIFYNDKEADPKDKFNFNVRLNLIASQPWVQC-GAFLDLS--YGTRSIAVR 615
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-25
Identities = 45/215 (20%), Positives = 68/215 (31%), Gaps = 34/215 (15%)
Query: 136 WKDSNL-GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNF 194
L G+G I+ V D G+ G S KI
Sbjct: 14 QSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAF-----------------RGKITALYAL 56
Query: 195 LNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGC 254
+ D +GHGTH A + GN T GMAP A+L + ++ G
Sbjct: 57 GRTNNAN-DTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGGL 104
Query: 255 P--ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSG 312
S + A G + + S G+ + + + + +AGN G
Sbjct: 105 GGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEG 164
Query: 313 PNSSTLANEA--PWMLTVGASTIDRSIVALTQLGN 345
PN T++ +TVGA+ R
Sbjct: 165 PNGGTISAPGTAKNAITVGATENLRPSFGSYADNI 199
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-17
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 21/135 (15%)
Query: 481 VAVFSSRGPNTASPGILKPDIIGPGVSILAAWP---FSEENITNTKSTFTMISGTSMSCP 537
VA FSSRGP G +KPD++ PG IL+A N S + + GTSM+ P
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATP 259
Query: 538 HLSGIAALLKSAHPDW-----SPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG 592
++G A L+ P+ +K+A++ A + L G G
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPN-----------GNQGWG 308
Query: 593 HVNPSKANDPGLVYE 607
V K+ + V E
Sbjct: 309 RVTLDKSLNVAYVNE 323
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 55/217 (25%), Positives = 79/217 (36%), Gaps = 50/217 (23%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ S G G IIGV+D G HP ++ +IIG N
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 196 ----NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
DN+GHGTH A T A + G+AP A L I K D
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVVGVAPKADLFIIKALSGD 121
Query: 252 LGCPESIVNAAIDAAVE------EGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVS 305
+ AI AV+ E + ++++SLG P+ ++ + A A + V
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVV 178
Query: 306 CSAGNSGPNSSTLANE-----APWMLTVGASTIDRSI 337
C+AGN G ++ VGA D +
Sbjct: 179 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRL 215
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 33/125 (26%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
++ F++ + DI+ PGV I + + S + +SGT+M+ PH+
Sbjct: 214 RLSDFTNTNE--------EIDIVAPGVGIKSTYL---------DSGYAELSGTAMAAPHV 256
Query: 540 SGIAALLKSAHPD-----WSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHV 594
+G AL+ + D S I + ++ A + + N G +
Sbjct: 257 AGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGN-----------GFLTL 305
Query: 595 NPSKA 599
+ +
Sbjct: 306 DLVER 310
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 7e-25
Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 30/222 (13%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELE--------------G 181
+ + I ++D F + W E G
Sbjct: 42 HNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQG 101
Query: 182 ANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAH 241
K + ++ I + H H ST GQ + G+AP
Sbjct: 102 LKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIV----------GQEHSPVFGIAPNCR 151
Query: 242 LAIYKVCETDLGCPESIVN-----AAIDAAVEEGVDVLSISLGSPSL-PFFADAMATAAF 295
+ G + +++ AID A+E G +++ + P+ + + A
Sbjct: 152 VINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK 211
Query: 296 TASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSI 337
+L+ GN+ S L P L VGA+ +D +
Sbjct: 212 KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTP 253
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 2e-18
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 26/124 (20%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
FS+ G N K I+ PG IL A P +E ++GTSM+ P +
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQPCTE--------EPVRLTGTSMAAPVM 298
Query: 540 SGIAALLKSAH----PDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVN 595
+GI+ALL S A+++A++ TA + E + G VN
Sbjct: 299 TGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPERCLRGFVN 349
Query: 596 PSKA 599
A
Sbjct: 350 IPGA 353
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 42/233 (18%), Positives = 70/233 (30%), Gaps = 53/233 (22%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
+ D I ++D G+ H + L N
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKN-------NFSTDSKNLVPLNGFR--GTEPEET 189
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
D GHGT + + ANG G+AP +Y+V +
Sbjct: 190 GDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKTEL 237
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGS-------------PSLPFFADAMATAAFTASQKGI 302
+ AI A +G V++IS+GS DA+ A A +K
Sbjct: 238 LWVS-KAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKS 296
Query: 303 LVSCSAGNSGPNSSTLANEA------------------PWMLTVGASTIDRSI 337
+V +AGN G + + ++TVG++ ++
Sbjct: 297 IVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSNL 349
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-14
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 33/134 (24%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENI-------------TNTKSTF 526
++ FS+ G N DI PG S F + T +
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 527 TMISGTSMSCPHLSGIAALLKSA-HPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPAD 585
+GT+++ P +SG AL+ H + P + N +
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR--------- 451
Query: 586 LFAVGAGHVNPSKA 599
G G ++ KA
Sbjct: 452 ---YGHGELDVYKA 462
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 43/217 (19%), Positives = 71/217 (32%), Gaps = 52/217 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
+ + VLD G+ HP + L G K
Sbjct: 28 VSVIQVAVLDTGVDYDHPDLAA-------NIAWCVSTLRG-----------KVSTKLRDC 69
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGT-AAGMAPLAHLAIYKVCETDLGCPESIVN 260
D +GHGTH T A N G+AP + +V + S +
Sbjct: 70 ADQNGHGTHVIGTIA----------ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA 119
Query: 261 AAIDAAV--------------------EEGVDVLSISLGSPSLPFFADAMATAAFTASQK 300
I+ A+ ++ +V+S+SLG P+ + A
Sbjct: 120 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 176
Query: 301 GILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSI 337
GI++ ++GN G S + P ++ VGA + +I
Sbjct: 177 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 213
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 43/133 (32%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+A FS+R P ++ PGV IL+ +P ++ + GT+M+ PH+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYP---------DDSYETLMGTAMATPHV 252
Query: 540 SGIAALLKSAH-------------PDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADL 586
SG+ AL+++A+ D S ++ + TAD + G
Sbjct: 253 SGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---------- 302
Query: 587 FAVGAGHVNPSKA 599
G G V + A
Sbjct: 303 -DYGYGVVRAALA 314
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 96.3 bits (239), Expect = 9e-21
Identities = 43/208 (20%), Positives = 68/208 (32%), Gaps = 41/208 (19%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
+ G +I+ V+D G+ HP +LEG L
Sbjct: 147 LWEEASGTNIIVAVVDTGVDGTHP------------------DLEGQVIAGYRPAFDEEL 188
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGT-AAGMAPLAHLAIYKVCETDLGC 254
GTH A T A + +G G+AP A + + +
Sbjct: 189 PAGTDSSYGGSAGTHVAGTIA----------AKKDGKGIVGVAPGAKIMPIVIFDDPALV 238
Query: 255 PE------SIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSA 308
V A I A + G V++ S G ++ M A A + G+++ SA
Sbjct: 239 GGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSA 295
Query: 309 GNSGPNSSTL--ANEAPWMLTVGASTID 334
GN+ +S A P ++ V A
Sbjct: 296 GNNTSDSHHQYPAG-YPGVIQVAALDYY 322
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 87.1 bits (215), Expect = 7e-18
Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 28/132 (21%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKST---------FT 527
VA FSSR + PGV+IL+ P + + +
Sbjct: 324 GTFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYD 375
Query: 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLF 587
GTSM+ PH++G+ A+L P+ P I+ + TA N G
Sbjct: 376 YYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-----------H 424
Query: 588 AVGAGHVNPSKA 599
G G V A
Sbjct: 425 DTGYGLVKLDAA 436
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-20
Identities = 57/318 (17%), Positives = 98/318 (30%), Gaps = 77/318 (24%)
Query: 60 TFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILEP- 118
+ + +VY ++ I + A V ++ G VE + E
Sbjct: 8 SVDKAKFNPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPG-----VEKV-EFD 60
Query: 119 ---QTTHSPNFLGLHQNSGF---------------WKDSNL-GKGVIIGVLDMGITPGHP 159
P++LG W ++ + + VLD G+ HP
Sbjct: 61 HQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHP 120
Query: 160 SFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNF 219
+ L G K D +GHGTH T A
Sbjct: 121 DLAANI-------AWCVSTLRG-----------KVSTKLRDCADQNGHGTHVIGTIAA-- 160
Query: 220 VNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV------------ 267
N G G+AP + +V + S + I+ A+
Sbjct: 161 --LNNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGD 213
Query: 268 --------EEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLA 319
++ +V+S+SLG P+ + A GI++ ++GN G S +
Sbjct: 214 GIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP 270
Query: 320 NEAPWMLTVGASTIDRSI 337
P ++ VGA + +I
Sbjct: 271 AAYPEVIAVGAIDSNDNI 288
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 43/133 (32%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+A FS+R P ++ PGV IL+ +P ++ + GT+M+ PH+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYP---------DDSYETLMGTAMATPHV 327
Query: 540 SGIAALLKSAH-------------PDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADL 586
SG+ AL+++A+ D S ++ + TAD + G
Sbjct: 328 SGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---------- 377
Query: 587 FAVGAGHVNPSKA 599
G G V + A
Sbjct: 378 -DYGYGVVRAALA 389
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 6e-20
Identities = 42/283 (14%), Positives = 96/283 (33%), Gaps = 55/283 (19%)
Query: 67 SKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILEPQTTHSPNF 126
+++ + +++++ + ++ GF +++ + ++ V+ I E + + +
Sbjct: 100 AQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALK-----LPHVDYIEEDSSVFAQSI 154
Query: 127 L-GL----HQNSGF--WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCEL 179
L ++ + G V + +LD I H EG
Sbjct: 155 PWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI--EGR----VMVTD---- 204
Query: 180 EGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPL 239
+ + + D HGTH A + G AG+A
Sbjct: 205 ------FENVPEEDGTRFHRQASKCDSHGTHLAGVVS--------------GRDAGVAKG 244
Query: 240 AHLAIYKVCETDLGCPESIVNAAIDAAVE------EGVDVLSISLGSPSLPFFADAMATA 293
A + +V S ++ + G V+ + L ++ + A
Sbjct: 245 ASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG----YSRVLNAA 300
Query: 294 AFTASQKGILVSCSAGNSGPNSSTL--ANEAPWMLTVGASTID 334
++ G+++ +AGN ++ A+ AP ++TVGA+
Sbjct: 301 CQRLARAGVVLVTAAGNFRDDACLYSPAS-APEVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 1e-14
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D+ PG I+ A + + F SGTS + H++GIAA++ SA P+ + A ++
Sbjct: 360 DLFAPGEDIIGASS-------DCSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELR 412
Query: 560 SAIMTTA--DIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVY 606
++ + D++N P L P + A+ V+
Sbjct: 413 QRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVW 461
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 9e-19
Identities = 45/209 (21%), Positives = 75/209 (35%), Gaps = 46/209 (22%)
Query: 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGAR 192
+ + G GV V+D G+ H E G + +
Sbjct: 19 DRNYNANFDGFGVTAYVIDTGVNNNHE------------------EFGG-----RSVSGY 55
Query: 193 NFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL 252
+F++ D +GHGTH A T G+ G+A ++ +V
Sbjct: 56 DFVDNDADSSDCNGHGTHVAGTIG--------------GSQYGVAKNVNIVGVRVLSCSG 101
Query: 253 GCPESIVNAAIDAAVEEGV--DVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGN 310
S V + +D + V ++SLG + A+ +A A Q G+ +AGN
Sbjct: 102 SGTTSGVISGVDWVAQNASGPSVANMSLGGG----QSTALDSAVQGAIQSGVSFMLAAGN 157
Query: 311 SGPNSSTL--ANEAPWMLTVGASTIDRSI 337
S ++ A P +TVG++T S
Sbjct: 158 SNADACNTSPAR-VPSGVTVGSTTSSDSR 185
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ FS+ G D+ PG I +AW T ISGTSM+ PH+
Sbjct: 184 SRSSFSNWGSCV--------DLFAPGSQIKSAWYDGG---YKT------ISGTSMATPHV 226
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTA 566
+G+AAL + +P + + + A
Sbjct: 227 AGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 45/206 (21%), Positives = 68/206 (33%), Gaps = 46/206 (22%)
Query: 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGAR 192
+ G GV V+D G+ H E G +
Sbjct: 21 DNNYHTDYDGSGVTAFVIDTGVLNTHN------------------EFGG-----RASSGY 57
Query: 193 NFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL 252
+F++ D +GHGTH A T G+ G+A ++ +V
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGTIG--------------GSTYGVAKNVNVVGVRVLNCSG 103
Query: 253 GCPESIVNAAIDAAVEEGV--DVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGN 310
S V A I+ V ++SLG + A A A GI +AGN
Sbjct: 104 SGSNSGVIAGINWVKNNASGPAVANMSLGGG----ASQATDDAVNAAVAAGITFVVAAGN 159
Query: 311 SGPNSSTL--ANEAPWMLTVGASTID 334
N+ A A +TVG++T +
Sbjct: 160 DNSNACNYSPAR-AADAITVGSTTSN 184
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ FS+ G DI PG SI ++W T+ +T T+ SGTSM+ PH+
Sbjct: 186 SRSSFSNYGTCL--------DIYAPGSSITSSW------YTSNSATNTI-SGTSMASPHV 230
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTA 566
+G+AAL +P+ SPA + + + T A
Sbjct: 231 AGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 29/240 (12%), Positives = 57/240 (23%), Gaps = 62/240 (25%)
Query: 136 WKDSNL-GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNF 194
V++ V+D G+ ++ +F
Sbjct: 36 TMSLTDKNTPVVVSVVDSGVAFIGG------------------------LSDSEFAKFSF 71
Query: 195 LNKSEPPIDND-----GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVC- 248
P HGT AS A + G+ P A ++ +V
Sbjct: 72 TQDGSPFPVKKSEALYIHGTAMASLIA------------SRYGIYGVYPHALISSRRVIP 119
Query: 249 ETDLGCPESIVNAA--IDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSC 306
+ + + +++IS G + + + L+
Sbjct: 120 DGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVA 179
Query: 307 SAGNSGPNSSTLANEAP-----------------WMLTVGASTIDRSIVALTQLGNQETY 349
+ GN G + L+ + ++ V A R G T
Sbjct: 180 AVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITG 239
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 28/136 (20%)
Query: 464 ASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK 523
A++ S G N DI PG +I P
Sbjct: 219 AALAQYRKGETPVLHGGGITGSRFGNNW-------VDIAAPGQNITFLRP---------D 262
Query: 524 STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLP 583
+ SGTS + +SG+ A + S +P + +K ++ +AD +
Sbjct: 263 AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKV------- 315
Query: 584 ADLFAVGAGHVNPSKA 599
+N KA
Sbjct: 316 -----TEGRVLNAEKA 326
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 8e-18
Identities = 45/229 (19%), Positives = 75/229 (32%), Gaps = 46/229 (20%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIG----- 190
W G+ V++ V+D GI H + G + + + G
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNA-------NVLPGYDFISNSQISLDGDGRDADP 76
Query: 191 -----------ARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPL 239
+ + D+ HG+H A T A N + AG+A
Sbjct: 77 FDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGV--------AGVAYG 128
Query: 240 AHLAIYKVCETDLGCPESIVNA---AIDAAV------EEGVDVLSISLGSPSLPFFADAM 290
A + + G I + A + V+++SLGS +
Sbjct: 129 AKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDG--QCSYNA 186
Query: 291 ATAAFTASQKGILVSCSAGNSGPNSSTL--ANEAPWMLTVGASTIDRSI 337
T A++ G LV +AGN N+S + +L+VGA+T
Sbjct: 187 QTMIDRATRLGALVVVAAGNENQNASNTWPTS-CNNVLSVGATTSRGIR 234
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
A FS+ G + D+ PG IL+ + ++ ++GTSM+ PH+
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVS--DAYSFMAGTSMATPHV 282
Query: 540 SGIAALLKSA----HPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVN 595
SG+AAL+ SA + + +PA +K +++T N A+G+G V+
Sbjct: 283 SGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN------------GRLDRALGSGIVD 330
Query: 596 PSKA 599
A
Sbjct: 331 AEAA 334
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 1e-17
Identities = 36/215 (16%), Positives = 68/215 (31%), Gaps = 45/215 (20%)
Query: 130 HQNSGF--WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNK 187
++ + G V + +LD I H EG +
Sbjct: 11 PPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI--EGR----VMVTD----------FE 54
Query: 188 IIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKV 247
+ + D HGTH A + G AG+A A + +V
Sbjct: 55 NVPEEDGTRFHRQASKCDSHGTHLAGVVS--------------GRDAGVAKGASMRSLRV 100
Query: 248 CETDLGCPESIVNAAIDAAVE------EGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301
S ++ + G V+ + L ++ + A ++ G
Sbjct: 101 LNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG----YSRVLNAACQRLARAG 156
Query: 302 ILVSCSAGNSGPNSSTL--ANEAPWMLTVGASTID 334
+++ +AGN ++ A+ AP ++TVGA+
Sbjct: 157 VVLVTAAGNFRDDACLYSPAS-APEVITVGATNAQ 190
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ + G N D+ PG I+ A + + F SGTS + H+
Sbjct: 192 QPVTLGTLGTNFGR----CVDLFAPGEDIIGASS-------DCSTCFVSQSGTSQAAAHV 240
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTA--DIVNLEGKPIMNHHLLPADLFAVGAGHVNPS 597
+GIAA++ SA P+ + A ++ ++ + D++N P L P + A+
Sbjct: 241 AGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAG 300
Query: 598 KANDPGLVY 606
V+
Sbjct: 301 WQLFCRTVW 309
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 47/206 (22%), Positives = 72/206 (34%), Gaps = 48/206 (23%)
Query: 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGAR 192
S + + G+GV + V+D GI H E G +
Sbjct: 21 SNSYTYTATGRGVNVYVIDTGIRTTHR------------------EFGG-----RARVGY 57
Query: 193 NFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL 252
+ L D +GHGTH A T G G+A +L +V + +
Sbjct: 58 DALG--GNGQDCNGHGTHVAGTIG--------------GVTYGVAKAVNLYAVRVLDCNG 101
Query: 253 GCPESIVNAAIDAAVEEGVD--VLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGN 310
S V A +D V ++SLG + A+ A + G++ + +AGN
Sbjct: 102 SGSTSGVIAGVDWVTRNHRRPAVANMSLGGG----VSTALDNAVKNSIAAGVVYAVAAGN 157
Query: 311 SGPNSSTL--ANEAPWMLTVGASTID 334
N+ A LTVGA+T
Sbjct: 158 DNANACNYSPAR-VAEALTVGATTSS 182
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 15/87 (17%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
A FS+ G D+ PG SI +AW T+ +T T+ +GTSM+ PH+
Sbjct: 184 ARASFSNYGSCV--------DLFAPGASIPSAW------YTSDTATQTL-NGTSMATPHV 228
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTA 566
+G+AAL +P +PA++ SAI+ A
Sbjct: 229 AGVAALYLEQNPSATPASVASAILNGA 255
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 138 DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNK 197
D++ G G + V+D G+ HP + EG A+ +
Sbjct: 27 DTSAGAGACVYVIDTGVEDTHP------------------DFEG--------RAKQIKSY 60
Query: 198 SEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPES 257
+ D GHGTH A T G+A + KV + S
Sbjct: 61 ASTARDGHGHGTHCAGTIG--------------SKTWGVAKKVSIFGVKVLDDSGSGSLS 106
Query: 258 IVNAAIDAAVEEGVD-------VLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGN 310
+ A +D + V S+SLG ++ A+ AA G+ V+ +AGN
Sbjct: 107 NIIAGMDFVASDRQSRNCPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGN 162
Query: 311 SGPNSSTL--ANEAPWMLTVGASTID 334
+++ A+ P + TVGA+ +
Sbjct: 163 DNRDAANTSPAS-EPTVCTVGATDSN 187
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ FS+ G DI PG SI + W TNT ISGTSM+ PH+
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTWIGGR---TNT------ISGTSMATPHI 231
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTA 566
+G+AA L S A+ I T +
Sbjct: 232 AGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 54/212 (25%)
Query: 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGA 191
S ++ D + G+G + V+D GI HP E EG A
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHP------------------EFEG--------RA 53
Query: 192 RNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
+ D +GHGTH A T G+A L KV + +
Sbjct: 54 QMVKTYYYSSRDGNGHGTHCAGTVG--------------SRTYGVAKKTQLFGVKVLDDN 99
Query: 252 LGCPESIVNAAIDAAVEEGVD-------VLSISLGSPSLPFFADAMATAAFTASQKGILV 304
S + A +D + + V S+SLG ++ ++ +AA G++V
Sbjct: 100 GSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMV 155
Query: 305 SCSAGNSGPNSSTL--ANEAPWMLTVGASTID 334
+ +AGN+ ++ A+ P + TVGAS
Sbjct: 156 AVAAGNNNADARNYSPAS-EPSVCTVGASDRY 186
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+ FS+ G DI GPG IL+ W T + ISGTSM+ PH+
Sbjct: 188 RRSSFSNYGSVL--------DIFGPGTDILSTWIGGS---TRS------ISGTSMATPHV 230
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTA 566
+G+AA L + + A+ I TA
Sbjct: 231 AGLAAYLMTLGKT-TAASACRYIADTA 256
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 2e-11
Identities = 35/220 (15%), Positives = 66/220 (30%), Gaps = 52/220 (23%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W ++ G GV+ ++D G+ + D N G+ +F
Sbjct: 47 WYNNITGAGVVAAIVDDGLDYENEDLKD---------------------NFCAEGSWDFN 85
Query: 196 NKSE---PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL 252
+ + P + +D HGT A A N G+ A ++ ++ L
Sbjct: 86 DNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRI----L 133
Query: 253 GCP--ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTA---------SQKG 301
A++ + + D+ S S G + A KG
Sbjct: 134 SGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKG 192
Query: 302 ILVSCSAGNSGPNSST----LANEAPWMLTVGASTIDRSI 337
+ ++GN G + + +T+GA
Sbjct: 193 AIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLH 232
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-06
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539
+S + G G I ++ GTS + P
Sbjct: 231 LHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING--------RCSNSHGGTSAAAPLA 278
Query: 540 SGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKP 575
+G+ LL A+P+ + ++ + +A +
Sbjct: 279 AGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADG 314
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 39/210 (18%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W G G+++ +LD GI HP + P GA+ + +
Sbjct: 31 WAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP-------------GASFD--VNDQDPDP 75
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
++++ HGT A A NG G+A A + ++ + ++
Sbjct: 76 QPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDGEV--- 124
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQ---------KGILVSC 306
V A + + S S G D A A A G +
Sbjct: 125 TDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVW 184
Query: 307 SAGNSGPNSST----LANEAPWMLTVGAST 332
++GN G + + + L++ ++T
Sbjct: 185 ASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 22/194 (11%)
Query: 409 GKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVF 468
GK V A E F G L +++V A+G + + + + ++
Sbjct: 153 GKTVDGPARLAE-----EAFFRGVSQGRGGLGSIFVW-ASGNGGREHDSCNCDGYTNSIY 206
Query: 469 KGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNT---KST 525
++ V +S +T + ++ +E+ I T +
Sbjct: 207 TLSISSATQFGNVPWYSEACSST-------------LATTYSSGNQNEKQIVTTDLRQKC 253
Query: 526 FTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPAD 585
+GTS S P +GI AL A+ + + ++ ++ T+ +L + +
Sbjct: 254 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 313
Query: 586 LFAVGAGHVNPSKA 599
+ G G ++
Sbjct: 314 SHSYGYGLLDAGAM 327
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 1e-06
Identities = 68/460 (14%), Positives = 125/460 (27%), Gaps = 147/460 (31%)
Query: 298 SQKGILVSCSAGNSGPNSSTLANEA----------P----WMLTVGASTIDRSIVA---- 339
K +L+ G G + +A + W L + +++
Sbjct: 149 PAKNVLID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQK 204
Query: 340 ----LTQLGNQETYDGETIFQPKD---------FPSKQLP---LVYPGVKNSSAAFCLPE 383
+ + I SK LV V+N +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AK 257
Query: 384 TLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVY 443
+ ++ K++L T R K V D AA ++ +H +
Sbjct: 258 AWNAFNLSCKILL------TTR---FKQVTDFLSAAT---------TTHISLDHHSMTL- 298
Query: 444 VSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIG 503
T S++ K + P + T +P + II
Sbjct: 299 ---------------TPDEVKSLLLKYLDCRPQDLPREVL-------TTNP--RRLSIIA 334
Query: 504 PGVSI-LAAWPFSEENITNTKSTFTMISGTSMSCPHLS---------GIAALLKSAH-PD 552
+ LA W + N T+I S L ++ SAH P
Sbjct: 335 ESIRDGLATWDNWKH--VNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 553 ------WSPAAIKSAIMTTADIVN-------LEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
W IKS +M +VN +E +P + +P ++ +
Sbjct: 390 ILLSLIWF-DVIKSDVM---VVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLE---- 440
Query: 600 NDPGLVYEISH----DDY--VRYLCGKNYTDQQIEG-----IVDHDVQCSKVSSIAEAEL 648
N+ L H D Y + + ++ I H + +
Sbjct: 441 NEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 649 NYPSFS-----VKLGSSPQTYNRTVTNVGQDNSFYTHHII 683
+ F ++ S+ + ++ N Q FY +I
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 5e-06
Identities = 66/547 (12%), Positives = 142/547 (25%), Gaps = 173/547 (31%)
Query: 316 STLANEAPWMLT-VGASTIDRSIVALTQLGNQE-TYDGETIFQPKDFPSKQLPLVYPGVK 373
L ++++ + S++ + ++ Y+ +F + Q L
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK----- 139
Query: 374 NSSAAFCLPETLKSIDVKGKVVLCQRG-GGTQRIRKGKDVKDAGGAAMILMNDEL---FD 429
L + L + V++ G G+ GK A + ++ ++ D
Sbjct: 140 -------LRQALLELRPAKNVLID--GVLGS-----GKTWV----ALDVCLSYKVQCKMD 181
Query: 430 YG----TVAD--------------NHVLPAVYVSYA------------AGERIKAYINST 459
+ + + + + + S + ++ + S
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 460 SSPTASIVFKGTVIGKKSAPEVAVFS--------SRGPNTASPGILKPDIIGPGVSILAA 511
+V V ++A F+ +R L +
Sbjct: 242 PYENCLLVLLN-V---QNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHS 295
Query: 512 WPFSEENITNTKSTFTMISGTSMSC-PH---------LSGIAALLKSAHPD-WSP----- 555
+ + KS P LS IA ++ W
Sbjct: 296 MTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVN 351
Query: 556 -AAIKSAIMTTADIVNLEGKPIMNHHLLPADL------FAVGAGHVN-PSK-------AN 600
+ + I ++ + L PA+ +V + P+
Sbjct: 352 CDKLTTIIESSLN------------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 601 DPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCS-KVSSIAEAELN------YPSF 653
V + + + L K + I + KV E L+ Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHY--- 453
Query: 654 SVKLGSSPQTY-NRTVTNVGQDNSFYTH---HIIVPE-GVKIIVQPD----------KIS 698
+ P+T+ + + D FY+H H+ E ++ + KI
Sbjct: 454 -----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 699 FTEKNQKATFSVT-----------FIRDQ-NSNASSVQGYLSWV--SATHTVRSP----- 739
A+ S+ +I D V L ++ + + S
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 740 -IAIGFE 745
IA+ E
Sbjct: 569 RIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 65/439 (14%), Positives = 128/439 (29%), Gaps = 145/439 (33%)
Query: 25 IENDANGLQ-TY--IVHVRKPKQEGNFSIKLDLDNWYRTFLP----DNISKSIDAHHRSR 77
++ + Q Y I+ V + NF K D+ + ++ L D+I S DA +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 78 MVYGY-----RNVISGF------------AARLTAEEV-KAMETKSGFISA--------- 110
++ ++ F + + E+ +M T+ +I
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQ 124
Query: 111 --------RVENILEPQT-----THSPNFLGLHQNSGFWKDSNLGKGVIIG-VLDMGITP 156
R++ L+ + + N + + G GK + V
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGS------GKTWVALDVCL----- 172
Query: 157 GHPSFSDEGMPPPPAKWKGKCELEGANCNNK---IIGARNFLNKSEPPIDNDGHGTHTAS 213
S+ + W L NCN+ + + L + +P + +
Sbjct: 173 ---SYKVQCKMDFKIFW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---- 220
Query: 214 TAAGNFVNGANLFGQANGTAAGMAPLAHLAIYK--------VCET------DLGCPESIV 259
+N+ + + A + L Y+ V +L C I+
Sbjct: 221 ---------SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--IL 269
Query: 260 NAAIDAAVEEGVDVLSISLGS-PSLPFFADAMATAAFTASQ-KGILVSCSAGNSGPNSST 317
V D LS + + SL + T + K +L+
Sbjct: 270 LTTRFKQV---TDFLSAATTTHISLDHHSMT-----LTPDEVKSLLLKY-LDCR---PQD 317
Query: 318 LANEA----PWMLT-VGAS---------------------TIDRSIVALTQLGNQETYDG 351
L E P L+ + S I+ S+ L ++ +D
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 352 ETIFQPKD--FPSKQLPLV 368
++F P P+ L L+
Sbjct: 378 LSVF-PPSAHIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 68/397 (17%), Positives = 119/397 (29%), Gaps = 125/397 (31%)
Query: 4 ILISLVYILSFSPTIAV-TSNGIENDANGLQTYIVHVRKPKQEGNFSIKLDLDN-WYRTF 61
+L L+Y + + T S+ I+ + +Q + + K K N + L L N
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CL-LVLLNVQN--- 255
Query: 62 LPDNISKSIDA-HHRSRMVYGYRNV-ISGFAARLTAEEVKAMETKSGFISARVENIL--- 116
+K+ +A + +++ R ++ F + T + V+++L
Sbjct: 256 -----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 117 ---EPQT------THSPNFLGL-------HQN-SGFWKDSNLGKGVIIGVLDMGITPGHP 159
PQ T +P L + WK N K + +++ + P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEP 368
Query: 160 S-----FSDEGMPPP----PAK-----W-------------------------------- 173
+ F + PP P W
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 174 -------KGKCELEGANCNNKIIGA----RNFLNKSEPPIDNDG----H-GTH-TASTAA 216
K K E E A + I+ + F + P D H G H
Sbjct: 429 PSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 217 GNFVNGANLF-------------GQANGTAAGMAP-LAHLAIYK--VCETDLGCPESIVN 260
+F A + + L L YK +C+ D E +VN
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-PKYERLVN 546
Query: 261 AAID--AAVEEGV------DVLSISLGSPSLPFFADA 289
A +D +EE + D+L I+L + F +A
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 1e-06
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 374 NSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV 433
N F +P S + L QRGGG K + G + ++ N +
Sbjct: 87 NPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVI 146
Query: 434 ADNHV----LPAVYVSYAAGERIKAYINSTSSPTASI 466
+H + A+ + G +I I T I
Sbjct: 147 PMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVI 183
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 382 PETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMND---ELFDYGTVADNHV 438
+ D+ GK+ L QR G K ++ G A+I+ N+ +L +D
Sbjct: 105 TADVAGKDLNGKIALIQR-GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASF 163
Query: 439 LPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASP 494
+ AV ++ G+ + A + + TA++ G + ++ V N +
Sbjct: 164 VAAVGITKQEGDALAANLRAGEKITATVKVAGAEVKTLTSHNVIATKKPDANKKNT 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.0 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.98 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.91 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.8 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.63 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.62 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.59 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 96.31 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.16 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.47 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.2 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.53 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 89.74 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 88.93 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 87.4 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 86.85 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 86.54 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-119 Score=1038.56 Aligned_cols=612 Identities=41% Similarity=0.669 Sum_probs=559.1
Q ss_pred CCCCCCccCccCCCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCC----cccCcceeeeeeCC
Q 042259 120 TTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEG----ANCNNKIIGARNFL 195 (745)
Q Consensus 120 ~~~s~~~~g~~~~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~----~~~n~ki~~~~~~~ 195 (745)
++++|+|+|+.+..++|..+.+|+||+|||||||||++||+|.+.++++++.+|++.|+.+. ..||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 46889999998778899999999999999999999999999999999999999999999876 56999999999997
Q ss_pred CC-----------CCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHH
Q 042259 196 NK-----------SEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAID 264 (745)
Q Consensus 196 ~~-----------~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~ 264 (745)
++ ..+++|..||||||||||||+.+++.+.+|++.|.+.||||+|+|++||+++ ..++..+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~~i~~Ai~ 159 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF-NEGTFTSDLIAAMD 159 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEE-TTEECHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccC-CCCCCHHHHHHHHH
Confidence 32 2467889999999999999999888888888889899999999999999999 77799999999999
Q ss_pred HHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeC
Q 042259 265 AAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLG 344 (745)
Q Consensus 265 ~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~ 344 (745)
||+++|+||||||||+...++..+.+..++++|.++|++||+||||+|+...++++.+||+|+|||++.|+.|...+.++
T Consensus 160 ~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lg 239 (649)
T 3i6s_A 160 QAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239 (649)
T ss_dssp HHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEET
T ss_pred HHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeC
Confidence 99999999999999998777888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcc--cceEEEEeeCCCcchhhhhhhHhhcCceEEEE
Q 042259 345 NQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDV--KGKVVLCQRGGGTQRIRKGKDVKDAGGAAMIL 422 (745)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~ 422 (745)
+++++.|.++++.... ...+|++|.. ....|.+..+++..+ +|||++| +|+.|.+.+|..+++++|+.|+|+
T Consensus 240 ng~~~~g~sl~~~~~~-~~~~plv~~~----~~~~C~~~~l~~~~vdl~GkIvlc-~~g~~~~~~k~~~~~~~Ga~g~i~ 313 (649)
T 3i6s_A 240 NGLKIRGWSLFPARAF-VRDSPVIYNK----TLSDCSSEELLSQVENPENTIVIC-DDNGDFSDQMRIITRARLKAAIFI 313 (649)
T ss_dssp TSCEEEEECCCSSCBC-EEEEEEECCT----TTTTCCCHHHHTTSSSGGGCEEEE-CCCSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCcEEeeeecccCccc-CcceeeEecc----cccccccccccccccccCCcEEEE-eCCCccHHHHHHHHHhcCceEEEE
Confidence 9999999999887643 6679999977 357899888888877 9999999 999999999999999999999999
Q ss_pred ecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceE
Q 042259 423 MNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDII 502 (745)
Q Consensus 423 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~ 502 (745)
+|+. .....+.+.+|.++|+..+|..|+.|++++.+++++|.+..+..+..+.+.+++||||||+...++++||||+
T Consensus 314 ~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~ 390 (649)
T 3i6s_A 314 SEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDIL 390 (649)
T ss_dssp CCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEE
T ss_pred ecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEE
Confidence 9986 4455678899999999999999999999999999999999999998999999999999999988899999999
Q ss_pred eCCccEEeccCCCCcc----CCC-cccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCccc
Q 042259 503 GPGVSILAAWPFSEEN----ITN-TKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIM 577 (745)
Q Consensus 503 APG~~I~sa~~~~~~~----~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~ 577 (745)
|||++|+++++..... .+. +...|..+||||||||||||+||||||+||+|+|++||++||+||+++++.+.++.
T Consensus 391 APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~ 470 (649)
T 3i6s_A 391 APGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470 (649)
T ss_dssp EECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCE
T ss_pred eCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccc
Confidence 9999999999885411 111 34689999999999999999999999999999999999999999999999999987
Q ss_pred CCC-CCCCCCcccCCCCCCccCCCCCCcccccccccceeecccCCCCccceeeeeccccc--ccccCcccccccCCCcee
Q 042259 578 NHH-LLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQ--CSKVSSIAEAELNYPSFS 654 (745)
Q Consensus 578 ~~~-~~~~~~~~~G~G~vn~~~A~~~~lv~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ln~ps~~ 654 (745)
+.. +.+++++.||+|+||+.+|++||||||++.+||++|||++||+.++|+.|++..++ |+. ...+||||||+
T Consensus 471 ~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNyPs~~ 546 (649)
T 3i6s_A 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNYPSFI 546 (649)
T ss_dssp ETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCCSSEE
T ss_pred ccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCCCcEE
Confidence 763 77889999999999999999999999999999999999999999999999998887 975 46799999999
Q ss_pred eec-CCcc-----EEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEE
Q 042259 655 VKL-GSSP-----QTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLS 728 (745)
Q Consensus 655 ~~~-~~~~-----~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~ 728 (745)
+.+ ..+. ++|+|||||||+...+|+++++.|.|++|+|+|++|+|.+.+|+++|+|||+......+.|.||+|+
T Consensus 547 ~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~ 626 (649)
T 3i6s_A 547 ALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSIT 626 (649)
T ss_dssp EEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEE
T ss_pred eecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEE
Confidence 987 4545 8999999999998999999999999999999999999998899999999999876545578999999
Q ss_pred EEc--CceEEEeeEEEEeC
Q 042259 729 WVS--ATHTVRSPIAIGFE 745 (745)
Q Consensus 729 ~~~--~~~~v~~P~~~~~~ 745 (745)
|+| +.|.||+||+|++.
T Consensus 627 w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 627 WVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEETTSCCEEEEEEEEEEC
T ss_pred EEcCCCCeEEEEeEEEEEc
Confidence 998 99999999999873
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-108 Score=952.74 Aligned_cols=600 Identities=43% Similarity=0.686 Sum_probs=505.0
Q ss_pred CCCCCCccCccCCCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCC-cccCcceeeeeeCCCCC
Q 042259 120 TTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEG-ANCNNKIIGARNFLNKS 198 (745)
Q Consensus 120 ~~~s~~~~g~~~~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~-~~~n~ki~~~~~~~~~~ 198 (745)
++++|+|+||++ .+|....+|+||+|||||||||++||+|.++++++++.+|+|.|+.+. ..||+|++++++|..+.
T Consensus 1 tt~s~~flGl~~--~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~ 78 (621)
T 3vta_A 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGR 78 (621)
T ss_dssp CCSHHHHTTCCT--TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSS
T ss_pred CCCChhHcCCCc--cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCC
Confidence 578999999964 688999999999999999999999999999999999999999999887 78999999999997653
Q ss_pred -------CCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCC
Q 042259 199 -------EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGV 271 (745)
Q Consensus 199 -------~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~ 271 (745)
.+++|++||||||||||||+...+.+..|.+.|.++||||+|+|++||+|+ +.++..+++++||++|+++|+
T Consensus 79 ~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~di~~a~~~a~~~g~ 157 (621)
T 3vta_A 79 PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW-NDGCSDTDILAAYDDAIADGV 157 (621)
T ss_dssp SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEE-TTEECHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeec-CCCCCHHHHHHHHHHHHHhCC
Confidence 456789999999999999998888888888888899999999999999999 888999999999999999999
Q ss_pred cEEEEccCCCC-CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeee
Q 042259 272 DVLSISLGSPS-LPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYD 350 (745)
Q Consensus 272 dVIn~S~G~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 350 (745)
||||||||+.. ..+..++++.++++|.++|+++|+||||+|+...++++.+||+++|++++.++.+...+.++++..+.
T Consensus 158 dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~ 237 (621)
T 3vta_A 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237 (621)
T ss_dssp SEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEE
T ss_pred CEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceee
Confidence 99999999875 45667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCceeeEecCCCC------CCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEec
Q 042259 351 GETIFQPKDFPSKQLPLVYPGVKN------SSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMN 424 (745)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 424 (745)
+.++.... ...+++++..... .....|.+..+++.+++|||++| +++ +..+..+....|+.++++++
T Consensus 238 ~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~-~~~---~~~~~~~~~~~Ga~gvi~~~ 310 (621)
T 3vta_A 238 GVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC-EAS---FGPHEFFKSLDGAAGVLMTS 310 (621)
T ss_dssp EBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEEC-SSC---CCHHHHHHHHTTCSEEEEEC
T ss_pred eeecccCC---CcccccccccccccccccccccccccccccccccccceEEEE-ecC---CChhHHhhhhcceeEEEEEe
Confidence 88876543 4456666654432 23567888899999999999999 665 34566777888999999998
Q ss_pred CCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeC
Q 042259 425 DELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGP 504 (745)
Q Consensus 425 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~AP 504 (745)
+... ..+.+.+|...++..++..++.|+.....+...+... +.......+.++.||||||+...++++||||+||
T Consensus 311 ~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~-~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~AP 385 (621)
T 3vta_A 311 NTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKS-TTILNASAPVVVSFSSRGPNRATKDVIKPDISGP 385 (621)
T ss_dssp SCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCC-EEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEE
T ss_pred cCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecc-eEeccCCCCceeeecCCCCCCCCCCeeccccccC
Confidence 7543 2456789999999999999999999998888877443 3444567889999999999988889999999999
Q ss_pred CccEEeccCCCC-ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCC
Q 042259 505 GVSILAAWPFSE-ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLP 583 (745)
Q Consensus 505 G~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 583 (745)
|++|+|+++... .........|..+||||||||||||+||||||+||+|+|++||++||+||++++..+ .+
T Consensus 386 G~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~--------~~ 457 (621)
T 3vta_A 386 GVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF--------NP 457 (621)
T ss_dssp CSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT--------CT
T ss_pred CcceEeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC--------CC
Confidence 999999998654 223344578999999999999999999999999999999999999999999876543 45
Q ss_pred CCCcccCCCCCCccCCCCCCcccccccccceeecccCCCCccceeeeecccccccccCcccccccCCCceeeecC---Cc
Q 042259 584 ADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLG---SS 660 (745)
Q Consensus 584 ~~~~~~G~G~vn~~~A~~~~lv~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~---~~ 660 (745)
..++.||+|+||+.+|++||||||+..+||+.|||+++|+.++++.+++....|.........+||||||++.+. ..
T Consensus 458 ~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~ 537 (621)
T 3vta_A 458 QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTF 537 (621)
T ss_dssp TTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEEECCSSCCE
T ss_pred CCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEEEccCCCce
Confidence 678999999999999999999999999999999999999999999999999999876666788999999998754 33
Q ss_pred cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEEcCceEEEeeE
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVSATHTVRSPI 740 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~~~~~v~~P~ 740 (745)
+++++|||||+|....+|+++++.|.|++|+|+|++|+|.+.+|+++|+|||+... .+.++||+|+|+|+.|.||+||
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~~--~~~~~~g~l~w~d~~h~Vr~Pi 615 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLVWSDGVHYVRSPI 615 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEECC--CSSEEEEEEEEECSSCCCEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEecC--CCceEEEEEEEEcCCEEEEeCE
Confidence 78999999999999999999999999999999999999999899999999998753 4579999999999999999999
Q ss_pred EEEe
Q 042259 741 AIGF 744 (745)
Q Consensus 741 ~~~~ 744 (745)
+|+.
T Consensus 616 ~v~~ 619 (621)
T 3vta_A 616 TITS 619 (621)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9974
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-80 Score=744.79 Aligned_cols=530 Identities=23% Similarity=0.336 Sum_probs=419.9
Q ss_pred CCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccC--------------CcccCcceeeeeeCCCCC
Q 042259 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELE--------------GANCNNKIIGARNFLNKS 198 (745)
Q Consensus 133 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~--------------~~~~n~ki~~~~~~~~~~ 198 (745)
..+|..+++|+||+|||||||||++||+|.+. ..|++.|... ..+||+|++++++|.++.
T Consensus 7 ~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~ 80 (926)
T 1xf1_A 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG 80 (926)
T ss_dssp HHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS
T ss_pred HHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC
Confidence 34899999999999999999999999999853 3455554321 047999999999998763
Q ss_pred CCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHhCCCcEEEE
Q 042259 199 EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSI 276 (745)
Q Consensus 199 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~ 276 (745)
..+ |..||||||||||||+...+.+. .+.+.||||+|+|+++|+++ ..+ +...++++||+||+++|+|||||
T Consensus 81 ~~~-D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~-~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~ 154 (926)
T 1xf1_A 81 KTA-VDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEI-VNGLADYARNYAQAIRDAINLGAKVINM 154 (926)
T ss_dssp CCC-CSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCC-CSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCC-CCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeec-CCCCCCcHHHHHHHHHHHHHhCCcEEEE
Confidence 333 89999999999999987554322 23468999999999999998 555 55678999999999999999999
Q ss_pred ccCCCC--CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCC---------------CCcccCCCceEEEeecccccceEE
Q 042259 277 SLGSPS--LPFFADAMATAAFTASQKGILVSCSAGNSGPNS---------------STLANEAPWMLTVGASTIDRSIVA 339 (745)
Q Consensus 277 S~G~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---------------~~~~~~~p~vitVga~~~~~~~~~ 339 (745)
|||+.. ...+.+.+..+++.|.++|++||+||||+|... ...++.+||+|+|||++.++.+..
T Consensus 155 SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~~~~~ 234 (926)
T 1xf1_A 155 SFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTE 234 (926)
T ss_dssp CCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSEEEEE
T ss_pred CCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecccccccccc
Confidence 999864 334567788888899999999999999999632 123345899999999999999888
Q ss_pred EEEe-CCCeeeeeeeccCCCCC-CCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCc
Q 042259 340 LTQL-GNQETYDGETIFQPKDF-PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGG 417 (745)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga 417 (745)
.+.+ +++....+.+++....+ ....+++++... .|.+..+ .+++|||++| +|+.|.+.+|..+++++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------g~~~~~~--~~v~Gkivl~-~rg~~~~~~k~~~~~~~Ga 305 (926)
T 1xf1_A 235 TVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------GTKEDDF--KDVKGKIALI-ERGDIDFKDKIAKAKKAGA 305 (926)
T ss_dssp EEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------SCSTTTT--TTCTTSEEEE-ECCSSCHHHHHHHHHHTTC
T ss_pred ceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------CCCccch--hhcCCeEEEE-ECCCCCHHHHHHHHHhCCC
Confidence 8877 55555555554433222 456799999764 3766655 6899999999 9999999999999999999
Q ss_pred eEEEEecCCCCCcc-ccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceE--ecCCCCCceecccCCCCCCCCC
Q 042259 418 AAMILMNDELFDYG-TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTV--IGKKSAPEVAVFSSRGPNTASP 494 (745)
Q Consensus 418 ~g~i~~n~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~fSS~GP~~~~~ 494 (745)
.|+|++|+...... .......+|.+.++..+|..|+. .+..+|++..+. ++....+.++.||||||+. +
T Consensus 306 ~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~--~ 377 (926)
T 1xf1_A 306 VGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA--D 377 (926)
T ss_dssp SEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT--T
T ss_pred cEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCcceeccccCCCCCC--C
Confidence 99999998654332 23346789999999999998874 345667776643 5556678999999999997 8
Q ss_pred CCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHH----hhCCCCCHHH----HHHHHhccc
Q 042259 495 GILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLK----SAHPDWSPAA----IKSAIMTTA 566 (745)
Q Consensus 495 g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~~s~~~----ik~~L~~TA 566 (745)
+++||||+|||++|+++++. +.|..+||||||||||||+||||+ +.||+|+|+| ||++||+||
T Consensus 378 ~~lKPDI~APG~~I~sa~~~---------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA 448 (926)
T 1xf1_A 378 GNIKPDIAAPGQDILSSVAN---------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 448 (926)
T ss_dssp SCBSCCEEEECCCEEESSSC---------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHS
T ss_pred CccCceEECCCCCEEeeccC---------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987 789999999999999999999996 4699999997 999999999
Q ss_pred ccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCcccccccccceeecccCCCCccceeeeecccccccccCccccc
Q 042259 567 DIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSSIAEA 646 (745)
Q Consensus 567 ~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (745)
+++...+. ...+++++||+|+||+.+|+++.+ |+|..+++...|
T Consensus 449 ~~~~~~~~------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~i------------------- 492 (926)
T 1xf1_A 449 TALYDEDE------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSKV------------------- 492 (926)
T ss_dssp BCCEEGGG------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSCE-------------------
T ss_pred CCcccCCC------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCccee-------------------
Confidence 98754321 224678899999999999999843 678765543221
Q ss_pred ccCCCceeeecCCccEEEEEEEEecCCCC--eeEEEEEEC--CCCeEEEEEcCeEEEeeC-------CceEEEEEEEEec
Q 042259 647 ELNYPSFSVKLGSSPQTYNRTVTNVGQDN--SFYTHHIIV--PEGVKIIVQPDKISFTEK-------NQKATFSVTFIRD 715 (745)
Q Consensus 647 ~ln~ps~~~~~~~~~~~~~~tv~n~~~~~--~ty~~~~~~--~~g~~v~v~p~~~~~~~~-------g~~~~~~v~~~~~ 715 (745)
.+.......+++|||||+|+.. .+|++++.. |.+..++|+|..|.+... ||+++|+|||++.
T Consensus 493 -------~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~ 565 (926)
T 1xf1_A 493 -------HLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDAS 565 (926)
T ss_dssp -------EEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECH
T ss_pred -------eccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcC
Confidence 2221123578899999999864 567777654 668888888876655433 9999999999986
Q ss_pred c--------CCCCCeEEEEEEEE--cCceE-EEeeEEEE
Q 042259 716 Q--------NSNASSVQGYLSWV--SATHT-VRSPIAIG 743 (745)
Q Consensus 716 ~--------~~~~~~~~G~~~~~--~~~~~-v~~P~~~~ 743 (745)
. .+.+.++||+|+|+ ++.|. ||+||++.
T Consensus 566 ~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~ 604 (926)
T 1xf1_A 566 RFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGF 604 (926)
T ss_dssp HHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred ccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEE
Confidence 2 23446899999999 56665 99999985
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-61 Score=550.70 Aligned_cols=365 Identities=33% Similarity=0.486 Sum_probs=291.7
Q ss_pred CCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHh---------
Q 042259 31 GLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAM--------- 101 (745)
Q Consensus 31 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L--------- 101 (745)
.+.+|||.|++... .. .+.+++++ .+.++.++|. .++||+++++.+++++|
T Consensus 34 ~~~~~iV~~~~~~~------~~----~~~~~~~~---------~g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~ 93 (539)
T 3afg_A 34 QEVSTIIMFDNQAD------KE----KAVEILDF---------LGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYF 93 (539)
T ss_dssp CEEEEEEEESSHHH------HH----HHHHHHHH---------HTCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC--
T ss_pred CceEEEEEECCCCC------HH----HHHHHHHh---------cCCeEEEEee-eeeEEEEEeCHHHHHHHHhhcccccc
Confidence 45679999987543 11 12223332 2468889997 79999999999999999
Q ss_pred --hcCCCeEEEEEccccCCCCCCC--CCccCccCCCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCcccccc
Q 042259 102 --ETKSGFISARVENILEPQTTHS--PNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKC 177 (745)
Q Consensus 102 --~~~p~V~~v~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~ 177 (745)
+++|+|++|++++.+++..... ...+.......+|..+++|+||+|||||||||++||+|.+
T Consensus 94 ~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~-------------- 159 (539)
T 3afg_A 94 GNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG-------------- 159 (539)
T ss_dssp -CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT--------------
T ss_pred ccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC--------------
Confidence 8899999999999887753221 1112222356699999999999999999999999999975
Q ss_pred ccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCH
Q 042259 178 ELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPE 256 (745)
Q Consensus 178 ~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~ 256 (745)
++++.++|.++...+.|++||||||||||+|+... ..|.+.||||+|+|+.+|+++ ..+ +..
T Consensus 160 ---------~i~~~~d~~~~~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~-~~g~~~~ 222 (539)
T 3afg_A 160 ---------KVIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLN-GQGSGSI 222 (539)
T ss_dssp ---------TEEEEEETTTCCSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSC-TTSEEEH
T ss_pred ---------CEeeeEECCCCCCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeec-CCCCcCH
Confidence 36677888776567789999999999999987432 123358999999999999998 555 788
Q ss_pred HHHHHHHHHHHhC----CCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCC--CcccCCCceEEEee
Q 042259 257 SIVNAAIDAAVEE----GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGA 330 (745)
Q Consensus 257 ~~i~~ai~~a~~~----g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga 330 (745)
+++++||+||+++ |++|||||||........+.+..++.++.++|+++|+||||+|.... ..++.++++|+|||
T Consensus 223 ~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA 302 (539)
T 3afg_A 223 SDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302 (539)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEE
T ss_pred HHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEee
Confidence 9999999999986 89999999998754445677888888999999999999999998643 45678899999999
Q ss_pred cccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhh
Q 042259 331 STIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGK 410 (745)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~ 410 (745)
++.
T Consensus 303 ~~~----------------------------------------------------------------------------- 305 (539)
T 3afg_A 303 VDK----------------------------------------------------------------------------- 305 (539)
T ss_dssp ECT-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 521
Q ss_pred hHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCC
Q 042259 411 DVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPN 490 (745)
Q Consensus 411 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~ 490 (745)
.+.+++||||||+
T Consensus 306 -------------------------------------------------------------------~~~~a~fSs~Gp~ 318 (539)
T 3afg_A 306 -------------------------------------------------------------------YDVITDFSSRGPT 318 (539)
T ss_dssp -------------------------------------------------------------------TSCBCSSSCCCCC
T ss_pred -------------------------------------------------------------------CcccccccCCCCC
Confidence 1267899999999
Q ss_pred CCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhccccccc
Q 042259 491 TASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVN 570 (745)
Q Consensus 491 ~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 570 (745)
. ++++||||+|||++|+++++............|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 319 ~--~~~~kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~ 396 (539)
T 3afg_A 319 A--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVK 396 (539)
T ss_dssp T--TCBCCCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSS
T ss_pred C--CCCCcccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 8 78999999999999999986532111112236999999999999999999999999999999999999999999775
Q ss_pred CCCCcccCCCCCCCCCcccCCCCCCccCCCCC
Q 042259 571 LEGKPIMNHHLLPADLFAVGAGHVNPSKANDP 602 (745)
Q Consensus 571 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~ 602 (745)
..+ .+++.||+|+||+.+|++.
T Consensus 397 ~~~----------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 397 PDE----------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp GGG----------CSBTTTBTCBCCHHHHHTG
T ss_pred CCC----------CCccCccCCccCHHHHhhh
Confidence 321 2466899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=508.50 Aligned_cols=336 Identities=27% Similarity=0.392 Sum_probs=274.3
Q ss_pred CceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEE
Q 042259 32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISAR 111 (745)
Q Consensus 32 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~ 111 (745)
+.+|||.||+... . . ++++ ..+.++.+.|. .+++|+++++++++++|+++|+|++|+
T Consensus 2 ~~~~iV~~~~~~~--~-------~----~~~~---------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~ 58 (395)
T 2z2z_A 2 TIRVIVSVDKAKF--N-------P----HEVL---------GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVE 58 (395)
T ss_dssp EEEEEEEECTTTC--C-------H----HHHH---------HTTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEE
T ss_pred cEEEEEEECCCcc--H-------H----HHHH---------HcCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEE
Confidence 5789999998742 1 1 1222 23668899998 599999999999999999999999999
Q ss_pred EccccCCCCCCC-----------CCccCccC--CCCCccCCCCCCc--cEEEEecCCCCCCCCCCCCCCCCCCCCccccc
Q 042259 112 VENILEPQTTHS-----------PNFLGLHQ--NSGFWKDSNLGKG--VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGK 176 (745)
Q Consensus 112 ~~~~~~~~~~~s-----------~~~~g~~~--~~~~~~~~~~G~g--v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~ 176 (745)
+++.++++.... ...|++.. ...+|..+ +|+| |+|+|||||||++||+|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~------------ 125 (395)
T 2z2z_A 59 FDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------ 125 (395)
T ss_dssp ECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG------------
T ss_pred EeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc------------
Confidence 999887643211 12354433 45689998 9999 99999999999999999853
Q ss_pred cccCCcccCcceeeeeeCCCCC-----CCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCC
Q 042259 177 CELEGANCNNKIIGARNFLNKS-----EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251 (745)
Q Consensus 177 ~~~~~~~~n~ki~~~~~~~~~~-----~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~ 251 (745)
+...++|..+. .+..|+.||||||||||+|.. + ..+ +.||||+|+|+.+|+++ .
T Consensus 126 -----------~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~-n-------~~g-~~GvAp~a~l~~~kv~~-~ 184 (395)
T 2z2z_A 126 -----------IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN-N-------DIG-VVGVAPGVQIYSVRVLD-A 184 (395)
T ss_dssp -----------EEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCC-S-------SSS-CCCSSTTCEEEEEECSC-T
T ss_pred -----------cccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeec-C-------CCc-eEEECCCCEEEEEEEec-C
Confidence 33445554331 124688999999999999873 1 111 47999999999999998 5
Q ss_pred CC-CCHHHHHHHHHHHHhC--------------------CCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCC
Q 042259 252 LG-CPESIVNAAIDAAVEE--------------------GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGN 310 (745)
Q Consensus 252 ~g-~~~~~i~~ai~~a~~~--------------------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN 310 (745)
.+ +..+++++||+||+++ +++|||||||+... ...+..++.++.++|+++|+||||
T Consensus 185 ~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN 261 (395)
T 2z2z_A 185 RGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASGN 261 (395)
T ss_dssp TSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCS
T ss_pred CCCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC---CHHHHHHHHHHHHCCCEEEEECCC
Confidence 55 7788999999999988 99999999998642 244555666888999999999999
Q ss_pred CCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcc
Q 042259 311 SGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDV 390 (745)
Q Consensus 311 ~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 390 (745)
+|.....+|+..+++|+|||++
T Consensus 262 ~g~~~~~~Pa~~~~vi~Vga~~---------------------------------------------------------- 283 (395)
T 2z2z_A 262 EGAPSPSYPAAYPEVIAVGAID---------------------------------------------------------- 283 (395)
T ss_dssp SCCSSCCBTTTSTTEEEEEEEC----------------------------------------------------------
T ss_pred CCCCCCCCccCCCCEEEEEEec----------------------------------------------------------
Confidence 9998888899999999999952
Q ss_pred cceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecc
Q 042259 391 KGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKG 470 (745)
Q Consensus 391 ~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
T Consensus 284 -------------------------------------------------------------------------------- 283 (395)
T 2z2z_A 284 -------------------------------------------------------------------------------- 283 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhC
Q 042259 471 TVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAH 550 (745)
Q Consensus 471 ~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 550 (745)
..+.+++||++|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 284 ------~~~~~a~fS~~G~----------~v~APG~~i~s~~~~---------~~y~~~sGTS~AaP~VaG~aAll~~~~ 338 (395)
T 2z2z_A 284 ------SNDNIASFSNRQP----------EVSAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAY 338 (395)
T ss_dssp ------TTSCBCTTSCSSC----------SEEEECSSEEEEETT---------TEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCCCcccCCCC----------CEEeCCCCeeeecCC---------CceEecCCHHHHHHHHHHHHHHHHHhC
Confidence 1126789999997 679999999999987 789999999999999999999999999
Q ss_pred C-------------CCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 551 P-------------DWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 551 p-------------~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
| .|++.+||++|++||+++... ..+..||||+||+.+|++
T Consensus 339 p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vd~~~A~~ 391 (395)
T 2z2z_A 339 YQKYGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQ 391 (395)
T ss_dssp HHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHH
T ss_pred ccccccccccccccCCCHHHHHHHHHhhccccCCC-----------CCCCCccCceeCHHHHHH
Confidence 9 999999999999999987432 345789999999999986
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-59 Score=528.10 Aligned_cols=335 Identities=19% Similarity=0.234 Sum_probs=60.2
Q ss_pred CceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEE
Q 042259 32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISAR 111 (745)
Q Consensus 32 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~ 111 (745)
+++|||+||++..... ...+.+++...+.+. ....++.+.|++.|+||+++++++++++|+++|+|++||
T Consensus 75 pg~YIV~lk~~~~~~~---~~~~~~~l~a~~~~~-------g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Ve 144 (692)
T 2p4e_P 75 PGTYVVVLKEETHLSQ---SERTARRLQAQAARR-------GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIE 144 (692)
T ss_dssp EEEEEEEECTTCCHHH---HHHHHHHHHHHHHHT-------TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEE
T ss_pred CCcEEEEECCCCCHHH---HHHHHHHHHHHHhhc-------ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEE
Confidence 5699999999876433 334444444433322 235689999999999999999999999999999999999
Q ss_pred EccccCCCCCCCCCccCccCC------CCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccC
Q 042259 112 VENILEPQTTHSPNFLGLHQN------SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCN 185 (745)
Q Consensus 112 ~~~~~~~~~~~s~~~~g~~~~------~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n 185 (745)
+++.++... ..|++.+. ...|..+.+|+||+|+|||||||++||+|.++... ..|+...+
T Consensus 145 pd~~v~~~~----~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~~---~~~~~~~d------- 210 (692)
T 2p4e_P 145 EDSSVFAQS----IPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMV---TDFENVPE------- 210 (692)
T ss_dssp EEEEEEEC------------------------------------------------------------------------
T ss_pred eccccccCC----CCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceEe---cccccccC-------
Confidence 999875421 12555431 23688888999999999999999999999875210 00100000
Q ss_pred cceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHH
Q 042259 186 NKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAID 264 (745)
Q Consensus 186 ~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~ 264 (745)
..+..|. ..+.|.+||||||||||+|+. .||||+|+|+++|+++ ..| ++.+++++||+
T Consensus 211 ---~dg~~~~---~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~-~~G~g~~s~ii~aI~ 269 (692)
T 2p4e_P 211 ---EDGTRFH---RQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLN-CQGKGTVSGTLIGLE 269 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---CCCCccc---CCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeec-CCCCCCHHHHHHHHH
Confidence 0000111 345688999999999999873 6999999999999998 555 78889999999
Q ss_pred HHHhC------CCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCC-cccCCCceEEEeecccccce
Q 042259 265 AAVEE------GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSST-LANEAPWMLTVGASTIDRSI 337 (745)
Q Consensus 265 ~a~~~------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~ 337 (745)
|++++ +++|||||||+..+. .+..++.++.++|+++|+||||+|.+... +++..+++|+|||++.+...
T Consensus 270 ~a~~~~~~~~~g~~VINmSlGg~~s~----~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~ 345 (692)
T 2p4e_P 270 FIRKSQLVQPVGPLVVLLPLAGGYSR----VLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhcccCCceEEEecCCCCCcH----HHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc
Confidence 99986 899999999976433 34445557889999999999999987643 47889999999996421100
Q ss_pred EEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCc
Q 042259 338 VALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGG 417 (745)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga 417 (745)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCc
Q 042259 418 AAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGIL 497 (745)
Q Consensus 418 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~ 497 (745)
...-+.||+|||.
T Consensus 346 ------------------------------------------------------------a~~ss~fSn~G~~------- 358 (692)
T 2p4e_P 346 ------------------------------------------------------------VTLGTLGTNFGRC------- 358 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------cccccccCCCCCc-------
Confidence 0001238999984
Q ss_pred cCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhccccccc
Q 042259 498 KPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVN 570 (745)
Q Consensus 498 KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 570 (745)
|||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|++||++|++||.+..
T Consensus 359 -vDI~APG~~I~St~~~~~-------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 359 -VDLFAPGEDIIGASSDCS-------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp -------------------------------------------------------------------------
T ss_pred -eeEEecCCcEEeeccCCC-------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 599999999999998632 57899999999999999999999999999999999999999997643
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-56 Score=500.11 Aligned_cols=333 Identities=22% Similarity=0.257 Sum_probs=264.2
Q ss_pred ccceEEEecceeeEEEEEeCHHHHHHhhc-CCCeEEEEEccccCCCCCCCC----------CccCccC---CCCCccCCC
Q 042259 75 RSRMVYGYRNVISGFAARLTAEEVKAMET-KSGFISARVENILEPQTTHSP----------NFLGLHQ---NSGFWKDSN 140 (745)
Q Consensus 75 ~~~v~~~y~~~~~g~s~~l~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~s~----------~~~g~~~---~~~~~~~~~ 140 (745)
+.++.+.|. .+++|+++++++++++|++ +|+|++|++++.+++...... ..|++.. ...+|..+.
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~ 143 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP 143 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence 567888886 5999999999999999999 999999999988877543221 1344433 236899999
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeee-CCCCCCCCCCCCCChhhhhhhhcccc
Q 042259 141 LGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARN-FLNKSEPPIDNDGHGTHTASTAAGNF 219 (745)
Q Consensus 141 ~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~-~~~~~~~~~d~~gHGThVAGiiag~~ 219 (745)
+|+||+|||||||||++||+|.++... +....- ....+.+... ...+...+.|..||||||||||+|+.
T Consensus 144 ~G~gv~VaViDtGid~~Hp~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g 213 (471)
T 3t41_A 144 KHANTKIAIIDTGVMKNHDDLKNNFST-------DSKNLV---PLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANG 213 (471)
T ss_dssp SSCCCCEEEEESCCCTTCTTTTTTBCT-------TCEECC---CTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBS
T ss_pred CCCCcEEEEEeCCCCCCChhHhcCccc-------CCcccc---cCCCccCCCcccCCCCCCCcCCCCccchhhheeecCC
Confidence 999999999999999999999874211 100000 0000000000 11111356788999999999999863
Q ss_pred cCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC-------------CCh
Q 042259 220 VNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSL-------------PFF 286 (745)
Q Consensus 220 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-------------~~~ 286 (745)
. +.||||+|+|+.+|+++ ...+...++++||+||++++++|||||||.... ...
T Consensus 214 ~------------~~GvAp~a~l~~~kv~~-~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~ 280 (471)
T 3t41_A 214 K------------LIGVAPNNKFTMYRVFG-SKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVE 280 (471)
T ss_dssp S------------SBCSSTTSCEEEEECCS-SSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHH
T ss_pred c------------eeEECCCCeEEEEEecc-CCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchh
Confidence 1 47999999999999998 667889999999999999999999999997320 133
Q ss_pred hhHHHHHHHHHhcCCcEEEEccCCCCCCCCC------------------cccCCCceEEEeecccccceEEEEEeCCCee
Q 042259 287 ADAMATAAFTASQKGILVSCSAGNSGPNSST------------------LANEAPWMLTVGASTIDRSIVALTQLGNQET 348 (745)
Q Consensus 287 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~------------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~ 348 (745)
.+.+..++..+.++|++||+||||+|..... +++.++++|+|||++.
T Consensus 281 ~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~--------------- 345 (471)
T 3t41_A 281 YDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ--------------- 345 (471)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT---------------
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCC---------------
Confidence 4667778888889999999999999987542 6678899999998521
Q ss_pred eeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC
Q 042259 349 YDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF 428 (745)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 428 (745)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCcc-
Q 042259 429 DYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVS- 507 (745)
Q Consensus 429 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~- 507 (745)
.+.+++||++||+. |||+|||++
T Consensus 346 -------------------------------------------------~~~~a~fS~~G~~~-------~di~APG~~i 369 (471)
T 3t41_A 346 -------------------------------------------------KSNLSEFSNFGMNY-------TDIAAPGGSF 369 (471)
T ss_dssp -------------------------------------------------TSSBCTTCCBCTTT-------CCEEEECCCC
T ss_pred -------------------------------------------------CCCCCCccCCCCCC-------CeEEecCCCc
Confidence 12678999999974 599999987
Q ss_pred ---------------------EEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHhcc
Q 042259 508 ---------------------ILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHP-DWSPAAIKSAIMTT 565 (745)
Q Consensus 508 ---------------------I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~T 565 (745)
|+++++. +.|..++|||||||||||++|||+|++| .++|++||++|++|
T Consensus 370 ~~~~~~g~~~~~~~~~~~~~~i~s~~~~---------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~t 440 (471)
T 3t41_A 370 AYLNQFGVDKWMNEGYMHKENILTTANN---------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQH 440 (471)
T ss_dssp HHHHHHHHHHHHHTTTHHHHSEEEECTT---------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccccCceeEecCCC---------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 8999887 7899999999999999999999999999 89999999999999
Q ss_pred cccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCC
Q 042259 566 ADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPG 603 (745)
Q Consensus 566 A~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~ 603 (745)
|++... .++..||||+||+.+|++..
T Consensus 441 A~~~~~------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 441 GTSKNN------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp SBCCSC------------CCHHHHTTCBBCHHHHTTTT
T ss_pred CCCCCC------------CCcCccccChhCHHHHHHHH
Confidence 987532 35678999999999999853
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=490.34 Aligned_cols=379 Identities=25% Similarity=0.364 Sum_probs=276.1
Q ss_pred cCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCC--CCCCC
Q 042259 127 LGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNK--SEPPI 202 (745)
Q Consensus 127 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~--~~~~~ 202 (745)
|++.+ ...+|+.+ |+||+|+|||||||++||+|.++ ++..+++... ...+.
T Consensus 6 W~l~~i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-----------------------~~~~~~~~~~~~~~~~~ 60 (441)
T 1y9z_A 6 WGQTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTGNWYQPG 60 (441)
T ss_dssp HHHHHTTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSCCTTCCC
T ss_pred CChhhcChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-----------------------cccCcccCCCCCCCCCC
Confidence 44433 45688865 78999999999999999999853 1222223211 13567
Q ss_pred CCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCc--eEEeeecccCCCC-CCHHHHHHHHHHHHhC-CCcEEEEcc
Q 042259 203 DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLA--HLAIYKVCETDLG-CPESIVNAAIDAAVEE-GVDVLSISL 278 (745)
Q Consensus 203 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A--~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~-g~dVIn~S~ 278 (745)
|..||||||||||+|... ..+ +.||||+| +|+.+|+++ ..+ +..+++++||+||+++ |++||||||
T Consensus 61 d~~gHGT~vAgiia~~~~--------~~g-~~GvAP~a~~~l~~~kv~~-~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~ 130 (441)
T 1y9z_A 61 NNNAHGTHVAGTIAAIAN--------NEG-VVGVMPNQNANIHIVKVFN-EAGWGYSSSLVAAIDTCVNSGGANVVTMSL 130 (441)
T ss_dssp SSCCHHHHHHHHHHCCCS--------SSB-CCCSSCSSCSEEEEEECEE-TTEECCSSCHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCCcHHHHHHHHhcccC--------CCC-ceEecCCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHhcCCcEEEeCC
Confidence 889999999999999742 122 48999995 999999998 655 7888999999999999 999999999
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceE-------------------E
Q 042259 279 GSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIV-------------------A 339 (745)
Q Consensus 279 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~-------------------~ 339 (745)
|..... ..+..++.++.++|+++|+||||+|.....+++..+++|+|||++.+.... .
T Consensus 131 G~~~~~---~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s 207 (441)
T 1y9z_A 131 GGSGST---TTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILS 207 (441)
T ss_dssp CBSCCB---HHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEE
T ss_pred CCCCCC---HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeec
Confidence 986432 344556668889999999999999998888899999999999987764321 1
Q ss_pred EEEeCCCe----eeeeeeccCCCCCCCCc-ee--eEecCC-----CCCCCCccCCC--CCCCCcccceEEEEeeCCCc--
Q 042259 340 LTQLGNQE----TYDGETIFQPKDFPSKQ-LP--LVYPGV-----KNSSAAFCLPE--TLKSIDVKGKVVLCQRGGGT-- 403 (745)
Q Consensus 340 ~~~~~~~~----~~~~~~~~~~~~~~~~~-~~--~~~~~~-----~~~~~~~c~~~--~~~~~~~~g~ivl~~~~g~~-- 403 (745)
.+..+++. ++.|.+++.....+... ++ +.|... .......|... .+++.+++|||++| +|+.|
T Consensus 208 ~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~-~rg~~~~ 286 (441)
T 1y9z_A 208 TVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV-ERVGNQG 286 (441)
T ss_dssp ECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEE-ECCSCSS
T ss_pred cccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEE-eccccCc
Confidence 11112221 22333333211100000 00 011000 00123457643 56788999999999 99876
Q ss_pred ---chhhhhhhHhhcCceEEEEecCCCCCc------cccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEec
Q 042259 404 ---QRIRKGKDVKDAGGAAMILMNDELFDY------GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIG 474 (745)
Q Consensus 404 ---~~~~~~~~~~~~Ga~g~i~~n~~~~~~------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 474 (745)
.+.+|..+++++|+.|+|++|+..... ........+|.+.++..+|..|+.++.+. .+
T Consensus 287 ~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t--------- 353 (441)
T 1y9z_A 287 SSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT--------- 353 (441)
T ss_dssp SSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE---------
T ss_pred ccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc---------
Confidence 678899999999999999998754211 11223568999999999999999876321 11
Q ss_pred CCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCC
Q 042259 475 KKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWS 554 (745)
Q Consensus 475 ~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s 554 (745)
+ ++... ..|..++|||||||||||++|||+|+||+|+
T Consensus 354 --------------------------~--------~~~~~---------~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s 390 (441)
T 1y9z_A 354 --------------------------V--------SNQGN---------QDYEYYNGTSMATPHVSGVATLVWSYHPECS 390 (441)
T ss_dssp --------------------------E--------EEEEE---------ESEEEECSHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred --------------------------c--------ccccC---------CCceeecccccCCcccchHHHHHHHHCCCCC
Confidence 1 11112 6899999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCcccccccccceeecccCCC
Q 042259 555 PAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNY 622 (745)
Q Consensus 555 ~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~d~~~~d~~~~~~~~~~ 622 (745)
|++||++||+||++++..+ .+..||+|+||+.+|++ |+.|||++++
T Consensus 391 p~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~~-----------~~~~lc~~~~ 436 (441)
T 1y9z_A 391 ASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAKA-----------YLDESCTGPT 436 (441)
T ss_dssp HHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHHH-----------HHHHCTTCC-
T ss_pred HHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHHH-----------HHHhhhcCCC
Confidence 9999999999999886543 35679999999999964 8999999865
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-55 Score=498.95 Aligned_cols=371 Identities=22% Similarity=0.285 Sum_probs=272.5
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCH----HHHHHhh--
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTA----EEVKAME-- 102 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~----~~~~~L~-- 102 (745)
...+++|||.||+... . +++++. .+.++.+++. .+++++++++. +.+++|+
T Consensus 28 ~~~~~~~IV~~k~~~~---------~----~~~~~~---------~g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~ 84 (671)
T 1r6v_A 28 EYTEGKILVGYNDRSE---------V----DKIVKA---------VNGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKAL 84 (671)
T ss_dssp SBCTTEEEEEESSHHH---------H----HHHHHH---------HTCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTS
T ss_pred ccCCccEEEEECCCcC---------H----HHHHHh---------cCCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhc
Confidence 4578999999996421 1 122221 2456777776 68999999864 3356675
Q ss_pred cCCCeEEEEEccccCCCCC----C-----------------------CCCccCccC--CCCC-ccCCCCCCccEEEEecC
Q 042259 103 TKSGFISARVENILEPQTT----H-----------------------SPNFLGLHQ--NSGF-WKDSNLGKGVIIGVLDM 152 (745)
Q Consensus 103 ~~p~V~~v~~~~~~~~~~~----~-----------------------s~~~~g~~~--~~~~-~~~~~~G~gv~VaVIDt 152 (745)
++|+|++|||+..+++... . ....|++.. ...+ |+. .+|+||+||||||
T Consensus 85 ~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDT 163 (671)
T 1r6v_A 85 ALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDT 163 (671)
T ss_dssp CCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEES
T ss_pred cCCCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeC
Confidence 4899999999976543210 0 011244332 3445 888 8999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCcccCCCCcc
Q 042259 153 GITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGT 232 (745)
Q Consensus 153 Gid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~ 232 (745)
|||++||+|.++- +.+.... . .... ....+..|.+||||||||||||... ..|
T Consensus 164 GVd~~HpdL~~~~-------~~g~~~~---------~-~~~~-p~~~d~~d~~gHGThVAGiIAa~~n--------g~g- 216 (671)
T 1r6v_A 164 GVDGTHPDLEGQV-------IAGYRPA---------F-DEEL-PAGTDSSYGGSAGTHVAGTIAAKKD--------GKG- 216 (671)
T ss_dssp CCBTTSGGGTTTB-------CCEEEGG---------G-TEEE-CTTCBCCTTCSHHHHHHHHHHCCCS--------SSS-
T ss_pred CCCCCCccccccE-------Eeccccc---------C-CCcC-CCCCCCccCCCcchhhhhhhhccCC--------CCc-
Confidence 9999999998641 1110000 0 0000 0112345678999999999998731 112
Q ss_pred eeeeccCceEEeeecccC-----CCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEE
Q 042259 233 AAGMAPLAHLAIYKVCET-----DLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSC 306 (745)
Q Consensus 233 ~~GvAP~A~l~~~kv~~~-----~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~ 306 (745)
+.||||+|+|+.+|+++. ..+ .....+++||+||+++|++|||||||+.. +...+..++..+.++|+++|+
T Consensus 217 v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~~GvlvVa 293 (671)
T 1r6v_A 217 IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVV 293 (671)
T ss_dssp CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEE
T ss_pred eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHhCCCEEEE
Confidence 479999999999999983 123 44567999999999999999999999853 234566677788899999999
Q ss_pred ccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCC
Q 042259 307 SAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETL 385 (745)
Q Consensus 307 AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 385 (745)
||||+|... ..+|+..+++|+|||++.+..
T Consensus 294 AAGN~g~~~~~~yPA~~~~VItVgA~d~~g~------------------------------------------------- 324 (671)
T 1r6v_A 294 SAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------------------- 324 (671)
T ss_dssp ECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-------------------------------------------------
T ss_pred eCCCCCCCCCccCcccCCCeEEEEEEcCCCC-------------------------------------------------
Confidence 999999875 567888999999999531110
Q ss_pred CCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEE
Q 042259 386 KSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS 465 (745)
Q Consensus 386 ~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 465 (745)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCcc---------CCCcccceeeeccccchh
Q 042259 466 IVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEEN---------ITNTKSTFTMISGTSMSC 536 (745)
Q Consensus 466 i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~---------~~~~~~~y~~~sGTSmAa 536 (745)
...+++||++||.. ||+|||++|+++++..... .....+.|..++||||||
T Consensus 325 ------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAA 384 (671)
T 1r6v_A 325 ------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAA 384 (671)
T ss_dssp ------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHH
T ss_pred ------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHH
Confidence 01478999999976 9999999999998763210 011235799999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCcccccccccc
Q 042259 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDY 613 (745)
Q Consensus 537 P~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~d~~~~d~ 613 (745)
|||||+||||+|++|++++.+||++|++||+++... ..+..||||+||+.+|++..+..+....+|
T Consensus 385 P~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~-----------g~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 385 PHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC-----------CCCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 999999999999999999999999999999987543 245689999999999999887776555444
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=437.94 Aligned_cols=262 Identities=32% Similarity=0.508 Sum_probs=220.6
Q ss_pred cCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCC
Q 042259 127 LGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDN 204 (745)
Q Consensus 127 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~ 204 (745)
|++.. ...+|..+++|+||+|+|||||||++||+|+ +..+++|..+.....|.
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-------------------------~~~g~~~~~~~~~~~d~ 60 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGEAYNTDG 60 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTCCTTCCS
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-------------------------CCCCccccCCCCCCCCC
Confidence 44433 4458999999999999999999999999994 23456666554556788
Q ss_pred CCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 042259 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSL 283 (745)
Q Consensus 205 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~ 283 (745)
.||||||||||+|... ..+ +.||||+|+|+.+|+++ ..+ +..++++++|+|+++++++|||||||....
T Consensus 61 ~gHGT~vAgiia~~~~--------~~g-~~GvAp~a~l~~~~v~~-~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~ 130 (274)
T 1r0r_E 61 NGHGTHVAGTVAALDN--------TTG-VLGVAPSVSLYAVKVLN-SSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 130 (274)
T ss_dssp SSHHHHHHHHHHCCSS--------SSB-CCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC
T ss_pred CCCHHHHHHHHHccCC--------CCc-eEEECCCCEEEEEEEEC-CCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC
Confidence 9999999999998731 111 47999999999999998 555 778899999999999999999999998642
Q ss_pred CChhhHHHHHHHHHhcCCcEEEEccCCCCCCC----CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCC
Q 042259 284 PFFADAMATAAFTASQKGILVSCSAGNSGPNS----STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKD 359 (745)
Q Consensus 284 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (745)
...+..++.++.++|+++|+||||+|... ..+|+..+++|+||+.+
T Consensus 131 ---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~--------------------------- 180 (274)
T 1r0r_E 131 ---STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD--------------------------- 180 (274)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC---------------------------
T ss_pred ---cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec---------------------------
Confidence 34566666788899999999999999763 45677889999999952
Q ss_pred CCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccc
Q 042259 360 FPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVL 439 (745)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 439 (745)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccC
Q 042259 440 PAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENI 519 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~ 519 (745)
..+.++.||++||.+ ||+|||.+|+++++.
T Consensus 181 -------------------------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~~----- 210 (274)
T 1r0r_E 181 -------------------------------------SNSNRASFSSVGAEL--------EVMAPGAGVYSTYPT----- 210 (274)
T ss_dssp -------------------------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETT-----
T ss_pred -------------------------------------CCCCcCccCCCCCCc--------eEEeCCCCeEeecCC-----
Confidence 112678999999854 999999999999987
Q ss_pred CCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCC
Q 042259 520 TNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599 (745)
Q Consensus 520 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A 599 (745)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. ++..||||+||+++|
T Consensus 211 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~~~~~~A 272 (274)
T 1r0r_E 211 ----NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAA 272 (274)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHH
T ss_pred ----CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------------CCCCcccCccCHHHH
Confidence 78999999999999999999999999999999999999999999762 356899999999999
Q ss_pred CC
Q 042259 600 ND 601 (745)
Q Consensus 600 ~~ 601 (745)
++
T Consensus 273 ~~ 274 (274)
T 1r0r_E 273 AQ 274 (274)
T ss_dssp TC
T ss_pred hC
Confidence 85
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-52 Score=435.43 Aligned_cols=265 Identities=30% Similarity=0.437 Sum_probs=216.9
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCC
Q 042259 126 FLGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPID 203 (745)
Q Consensus 126 ~~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d 203 (745)
.|++.. ...+|+.+..|+||+|+|||||||++||+|.++ ++..++|.++..++.|
T Consensus 12 ~w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~-----------------------~~~~~~~~~~~~~~~d 68 (280)
T 1dbi_A 12 QYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------VIKGYDFVDNDYDPMD 68 (280)
T ss_dssp CCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------EEEEEETTTTBSCCCC
T ss_pred CCChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC-----------------------cccceeccCCCCCCCC
Confidence 355544 356899988888999999999999999999853 5567788766566788
Q ss_pred CCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 042259 204 NDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPS 282 (745)
Q Consensus 204 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 282 (745)
..+|||||||||+|...+. .+ +.||||+|+|+.+|+++ ..+ +..+++++||+|+++++++|||||||...
T Consensus 69 ~~gHGT~vAgiia~~~~~~-------~g-~~GvAp~a~l~~~kv~~-~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~ 139 (280)
T 1dbi_A 69 LNNHGTHVAGIAAAETNNA-------TG-IAGMAPNTRILAVRALD-RNGSGTLSDIADAIIYAADSGAEVINLSLGCDC 139 (280)
T ss_dssp SSSHHHHHHHHHHCCCSSS-------SS-CCCSSSSCEEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC
T ss_pred CCCcHHHHHHHHhCcCCCC-------Cc-ceEeCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 9999999999999875322 11 47999999999999998 544 78889999999999999999999999863
Q ss_pred CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 283 LPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 283 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
. ...+..++..+.++|+++|+||||+|.....+++..+++|+|||++.
T Consensus 140 ~---~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------------------------- 187 (280)
T 1dbi_A 140 H---TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ----------------------------- 187 (280)
T ss_dssp C---CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-----------------------------
T ss_pred C---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-----------------------------
Confidence 2 34556666688899999999999999887788889999999999521
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCc
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNT 522 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~ 522 (745)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 188 -----------------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~-------- 216 (280)
T 1dbi_A 188 -----------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG-------- 216 (280)
T ss_dssp -----------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT--------
T ss_pred -----------------------------------CCCcCCCCCCCCCc--------eEEEecCCeEeecCC--------
Confidence 12678999999865 999999999999987
Q ss_pred ccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 523 KSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 523 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
+.|..++|||||||||||++|||++ |++++.+||++|++||+++... ...||||+||+.+|++
T Consensus 217 -~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~-------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 217 -NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT-------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB-------------TTTBSSEECCHHHHHT
T ss_pred -CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC-------------CCcccCCEECHHHHhc
Confidence 7899999999999999999999987 8999999999999999987422 2479999999999986
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-52 Score=430.55 Aligned_cols=261 Identities=34% Similarity=0.530 Sum_probs=222.4
Q ss_pred cCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCC
Q 042259 127 LGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDN 204 (745)
Q Consensus 127 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~ 204 (745)
|++.. .+.+|..+++|+||+|+|||||| .+||+|+ +...++|..+...+.|.
T Consensus 6 W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-------------------------~~~~~~~~~~~~~~~d~ 59 (269)
T 1gci_A 6 WGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-------------------------IRGGASFVPGEPSTQDG 59 (269)
T ss_dssp HHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-------------------------EEEEEECSTTCCSCSCS
T ss_pred cChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-------------------------ccCCcccCCCCCCCCCC
Confidence 44443 35589999999999999999999 8999995 23456676654556789
Q ss_pred CCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 042259 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSL 283 (745)
Q Consensus 205 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~ 283 (745)
.||||||||||+|... ..+ +.||||+|+|+.+|+++ ..+ +..+++++||+|+++++++|||||||....
T Consensus 60 ~gHGT~vAgiia~~~~--------~~~-~~GvAp~a~l~~~~v~~-~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~ 129 (269)
T 1gci_A 60 NGHGTHVAGTIAALNN--------SIG-VLGVAPSAELYAVKVLG-ASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP 129 (269)
T ss_dssp SSHHHHHHHHHHCCCS--------SSB-CCCSSTTCEEEEEECBC-TTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred CCChHHHHHHHhcCcC--------CCC-cEEeCCCCEEEEEEeEC-CCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 9999999999998731 111 47999999999999998 544 788899999999999999999999998642
Q ss_pred CChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCC
Q 042259 284 PFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSK 363 (745)
Q Consensus 284 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (745)
...+..++.++.++|+++|+||||+|.....+|+..+++|+||+++.
T Consensus 130 ---~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------ 176 (269)
T 1gci_A 130 ---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------------------------ 176 (269)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT------------------------------
T ss_pred ---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC------------------------------
Confidence 24566666688899999999999999988888999999999999521
Q ss_pred ceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEE
Q 042259 364 QLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVY 443 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 443 (745)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcc
Q 042259 444 VSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK 523 (745)
Q Consensus 444 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~ 523 (745)
.+.+++||++||.+ ||+|||++|+++++.
T Consensus 177 ----------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~--------- 205 (269)
T 1gci_A 177 ----------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG--------- 205 (269)
T ss_dssp ----------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT---------
T ss_pred ----------------------------------CCCCCCCCCCCCCc--------ceEecCCCeEeecCC---------
Confidence 12678999999875 999999999999987
Q ss_pred cceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 524 STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 524 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. ++..||||+||+++|++
T Consensus 206 ~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 206 STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC--------------CCCCcccCccCHHHHcC
Confidence 78999999999999999999999999999999999999999999762 35689999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=430.68 Aligned_cols=263 Identities=33% Similarity=0.526 Sum_probs=220.2
Q ss_pred cCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCC-CCC
Q 042259 127 LGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP-PID 203 (745)
Q Consensus 127 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~-~~d 203 (745)
|++.. ...+|..+++|+||+|+|||||||++||+|+ +..+++|..+... ..|
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-------------------------~~~g~~~~~~~~~~~~d 60 (281)
T 1to2_E 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK-------------------------VAGGASMVPSETNPFQD 60 (281)
T ss_dssp HHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECCTTCCCTTCC
T ss_pred cchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHc-------------------------CcCCccccCCCCCCCCC
Confidence 55443 3458999999999999999999999999995 2234555543333 368
Q ss_pred CCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 042259 204 NDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPS 282 (745)
Q Consensus 204 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 282 (745)
..||||||||||+|... ..+ +.||||+|+|+.+|++. ..+ +..++++++|+|+++++++|||||||...
T Consensus 61 ~~gHGT~vAgiia~~~~--------~~g-~~GvAp~a~l~~~kv~~-~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 130 (281)
T 1to2_E 61 NNSHGTHVAGTVAALNN--------SIG-VLGVAPSASLYAVKVLG-ADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130 (281)
T ss_dssp SSSHHHHHHHHHHCCSS--------SSS-BCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC
T ss_pred CCCcHHHHHHHHhccCC--------CCc-ceeeCCCCEEEEEEEeC-CCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC
Confidence 89999999999998731 112 47999999999999998 555 77889999999999999999999999864
Q ss_pred CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCC----CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCC
Q 042259 283 LPFFADAMATAAFTASQKGILVSCSAGNSGPNS----STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPK 358 (745)
Q Consensus 283 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (745)
. ...+..++.++.++|+++|+||||+|... ..+|+..+++|+||+++
T Consensus 131 ~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~-------------------------- 181 (281)
T 1to2_E 131 G---SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD-------------------------- 181 (281)
T ss_dssp C---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC--------------------------
T ss_pred C---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec--------------------------
Confidence 2 34566666788899999999999999763 45677889999999842
Q ss_pred CCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcc
Q 042259 359 DFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHV 438 (745)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 438 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCcc
Q 042259 439 LPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEEN 518 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~ 518 (745)
..+.++.||++||.+ ||+|||.+|+++++.
T Consensus 182 --------------------------------------~~~~~~~fS~~G~~~--------di~APG~~i~s~~~~---- 211 (281)
T 1to2_E 182 --------------------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPG---- 211 (281)
T ss_dssp --------------------------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETT----
T ss_pred --------------------------------------CCCCcCCcCCCCCCc--------eEEecCCCeEeecCC----
Confidence 112678999999965 999999999999987
Q ss_pred CCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccC
Q 042259 519 ITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSK 598 (745)
Q Consensus 519 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~ 598 (745)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++. +++.||||+||+.+
T Consensus 212 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~v~~~~ 272 (281)
T 1to2_E 212 -----NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQA 272 (281)
T ss_dssp -----TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHH
T ss_pred -----CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC--------------CCCCcccceecHHH
Confidence 78999999999999999999999999999999999999999999762 35689999999999
Q ss_pred CCCC
Q 042259 599 ANDP 602 (745)
Q Consensus 599 A~~~ 602 (745)
|+++
T Consensus 273 a~~~ 276 (281)
T 1to2_E 273 AAQH 276 (281)
T ss_dssp HTSS
T ss_pred Hhhh
Confidence 9985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-53 Score=457.84 Aligned_cols=292 Identities=22% Similarity=0.245 Sum_probs=197.5
Q ss_pred CCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCC---cccCcc-----------eeeeeeCCCCCC
Q 042259 134 GFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEG---ANCNNK-----------IIGARNFLNKSE 199 (745)
Q Consensus 134 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~---~~~n~k-----------i~~~~~~~~~~~ 199 (745)
++|+.+..|+||+|||||||||++||+|.+....+....|+..++... ...+.. ......+..+..
T Consensus 22 ~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (357)
T 4h6x_A 22 DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPDTK 101 (357)
T ss_dssp HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHCTTTH
T ss_pred HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccccCCCC
Confidence 489999889999999999999999999998777777778877665432 000000 000111111112
Q ss_pred CCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-----CCHHHHHHHHHHHHhCCCcEE
Q 042259 200 PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-----CPESIVNAAIDAAVEEGVDVL 274 (745)
Q Consensus 200 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~~g~dVI 274 (745)
++.|.+||||||||||+|+..+ .+.||||+|+|+.+|++....+ ....+++++|+|++++|++||
T Consensus 102 ~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~Vi 171 (357)
T 4h6x_A 102 DRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANII 171 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSEE
T ss_pred CCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCEE
Confidence 3446779999999999987421 2479999999999999762211 345578999999999999999
Q ss_pred EEccCCCC-CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeee
Q 042259 275 SISLGSPS-LPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGET 353 (745)
Q Consensus 275 n~S~G~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~ 353 (745)
|||||... .....+.+..++.++.++|+++|+||||+|.....+|+..+++|+|||++
T Consensus 172 n~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~--------------------- 230 (357)
T 4h6x_A 172 HCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK--------------------- 230 (357)
T ss_dssp EEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC---------------------
T ss_pred eeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec---------------------
Confidence 99999764 33445667777778999999999999999998888899999999999952
Q ss_pred ccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccc
Q 042259 354 IFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV 433 (745)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 433 (745)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccC
Q 042259 434 ADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWP 513 (745)
Q Consensus 434 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~ 513 (745)
..+.+++|||||+.. .||||+|||++|+++++
T Consensus 231 -------------------------------------------~~~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~ 262 (357)
T 4h6x_A 231 -------------------------------------------VDGTPCHFSNWGGNN-----TKEGILAPGEEILGAQP 262 (357)
T ss_dssp -------------------------------------------TTSSBCTTCC---CT-----TTTEEEEECSSEEECCT
T ss_pred -------------------------------------------cCCcccccccCCCCC-----CccceeecCCCeEeccC
Confidence 123678999999764 58999999999999988
Q ss_pred CCCccCCCcccceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCccc
Q 042259 514 FSEENITNTKSTFTMISGTSMSCPHLSGIAALLKS----AHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAV 589 (745)
Q Consensus 514 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 589 (745)
.. +.|..++|||||||||||++|||++ ++|.|+++|||++|++||++++... ...+..|
T Consensus 263 ~~--------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~---------~~~~~~~ 325 (357)
T 4h6x_A 263 CT--------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPERC 325 (357)
T ss_dssp TC--------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-----------------------C
T ss_pred CC--------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCcccc
Confidence 63 4567899999999999999999995 4678999999999999999875321 2345689
Q ss_pred CCCCCCccCCCC
Q 042259 590 GAGHVNPSKAND 601 (745)
Q Consensus 590 G~G~vn~~~A~~ 601 (745)
|+|+||+.+|++
T Consensus 326 G~G~vn~~~A~~ 337 (357)
T 4h6x_A 326 LRGFVNIPGAMK 337 (357)
T ss_dssp TTCBCCHHHHHH
T ss_pred eeEEecHHHHHH
Confidence 999999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-51 Score=425.32 Aligned_cols=258 Identities=32% Similarity=0.508 Sum_probs=220.9
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
...+|+.. +|+||+|+|||||||++||+|.++ ++..++|.++...+.|..||||||
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~~~~~~d~~gHGT~v 75 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------VVGGWDFVDNDSTPQNGNGHGTHC 75 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEETTTTBSCCCCSSSHHHHH
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC-----------------------ccccccccCCCCCCCCCCCcHHHH
Confidence 45588887 799999999999999999999853 556778877656678899999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHH
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAM 290 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~ 290 (745)
||||+|...++ .+ +.||||+|+|+.+|+++ ..+ +...++++||+||++++++|||||||.... .+.+
T Consensus 76 Agiia~~~~n~-------~g-~~GvAp~a~l~~~~v~~-~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~---~~~l 143 (279)
T 1thm_A 76 AGIAAAVTNNS-------TG-IAGTAPKASILAVRVLD-NSGSGTWTAVANGITYAADQGAKVISLSLGGTVG---NSGL 143 (279)
T ss_dssp HHHHHCCCSSS-------SS-CCCSSTTCEEEEEECSC-TTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSC---CHHH
T ss_pred HHHHhCccCCC-------Cc-cEEeCCCCEEEEEEeeC-CCCCccHHHHHHHHHHHHHCCCCEEEEecCCCCC---CHHH
Confidence 99999975332 12 47999999999999998 544 788899999999999999999999998632 3456
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 291 ATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 291 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
..++.++.++|+++|+||||+|.....+++..+++|+||+++.
T Consensus 144 ~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------- 186 (279)
T 1thm_A 144 QQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------------------------------- 186 (279)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------------------------------
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-------------------------------------
Confidence 6666788899999999999999988888999999999999521
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
.+.++.||++||.+ ||+|||++|+++++. +.|..++
T Consensus 187 ---------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~---------~~~~~~s 222 (279)
T 1thm_A 187 ---------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---------STYASLS 222 (279)
T ss_dssp ---------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT---------TEEEEEC
T ss_pred ---------------------------CCCcCCcCCCCCce--------EEEEcCCCeEEEeCC---------CCEEEcc
Confidence 12678999999865 999999999999987 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
|||||||||||++||| ++|.+++++||++|++||+++...+ ..||+|+||+.+|++
T Consensus 223 GTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~-------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 223 GTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG-------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp SHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT-------------TTBSSEECCHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC-------------ccccCCeeCHHHHhc
Confidence 9999999999999999 5799999999999999999875331 469999999999875
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-50 Score=429.10 Aligned_cols=284 Identities=30% Similarity=0.430 Sum_probs=226.4
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC----C
Q 042259 126 FLGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS----E 199 (745)
Q Consensus 126 ~~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~----~ 199 (745)
.|++.. ...+|..+++|+||+|+|||||||++||+|.++ +...++|.... .
T Consensus 7 ~W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~-----------------------~~~~~~~~~~~~~~~~ 63 (310)
T 2ixt_A 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPINN 63 (310)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCEET
T ss_pred CCchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc-----------------------ccccccccCCCCCCCC
Confidence 355543 577999999999999999999999999999853 44456665431 3
Q ss_pred CCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCC-----cE
Q 042259 200 PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGV-----DV 273 (745)
Q Consensus 200 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~-----dV 273 (745)
...|..||||||||||+|....+ ...+.||||+|+|+.+|++. +.+ +..++++++|+|++++++ +|
T Consensus 64 ~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~-~~g~~~~~~~~~ai~~a~~~~~~~~~~~V 135 (310)
T 2ixt_A 64 SCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLL-DSGSGYSDDIAAAIRHAADQATATGTKTI 135 (310)
T ss_dssp CCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSC-TTSCCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEc-CCCCCcHHHHHHHHHHHHHhhhccCCCeE
Confidence 35688999999999999874211 11247999999999999998 554 788899999999999888 99
Q ss_pred EEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCC--CCCcccCCCceEEEeecccccceEEEEEeCCCeeeee
Q 042259 274 LSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPN--SSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDG 351 (745)
Q Consensus 274 In~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~ 351 (745)
||||||.... ...+..++.++.++|+++|+||||+|.. ...+++..+++|+||+++...
T Consensus 136 in~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~---------------- 196 (310)
T 2ixt_A 136 ISMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ---------------- 196 (310)
T ss_dssp EEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE----------------
T ss_pred EEEcCCCCCC---CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc----------------
Confidence 9999998642 3455666668889999999999999976 456778889999999953100
Q ss_pred eeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc
Q 042259 352 ETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG 431 (745)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 431 (745)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCC--ceecccCCCCCCCC----CCCccCceEeCC
Q 042259 432 TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAP--EVAVFSSRGPNTAS----PGILKPDIIGPG 505 (745)
Q Consensus 432 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~GP~~~~----~g~~KPDi~APG 505 (745)
..+ .++.||++||.... .++.||||+|||
T Consensus 197 ---------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG 231 (310)
T 2ixt_A 197 ---------------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPG 231 (310)
T ss_dssp ---------------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEEC
T ss_pred ---------------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCC
Confidence 001 57889999995421 123599999999
Q ss_pred ccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCC
Q 042259 506 VSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPAD 585 (745)
Q Consensus 506 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 585 (745)
++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+. ....+..
T Consensus 232 ~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~----~~a~~g~ 298 (310)
T 2ixt_A 232 SSVYSTWYN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG----YGAAIGD 298 (310)
T ss_dssp SSEEEECTT---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----TTCCSSS
T ss_pred CCEeeecCC---------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC----cccccCC
Confidence 999999887 789999999999999999999999999999999999999999998764321 1123567
Q ss_pred CcccCCCCCCcc
Q 042259 586 LFAVGAGHVNPS 597 (745)
Q Consensus 586 ~~~~G~G~vn~~ 597 (745)
+..||||++|++
T Consensus 299 d~~~G~G~~~vq 310 (310)
T 2ixt_A 299 DYASGFGFARVQ 310 (310)
T ss_dssp BTTTBTCBCCC-
T ss_pred ccccccceeecC
Confidence 789999999963
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=440.33 Aligned_cols=266 Identities=30% Similarity=0.468 Sum_probs=217.1
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC----C
Q 042259 126 FLGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS----E 199 (745)
Q Consensus 126 ~~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~----~ 199 (745)
.|++.. ...+|+.+++|+||+|+|||||||++||+|.++ +..+++|..++ .
T Consensus 22 ~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~-----------------------~~~~~~~~~~~~~~~~ 78 (327)
T 2x8j_A 22 PMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAER-----------------------IIGGVNLTTDYGGDET 78 (327)
T ss_dssp CHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG-----------------------EEEEEECSSGGGGCTT
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc-----------------------ccCCccccCCCCCCCC
Confidence 355543 456899999999999999999999999999853 44556665431 2
Q ss_pred CCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHh------CCCc
Q 042259 200 PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVE------EGVD 272 (745)
Q Consensus 200 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~------~g~d 272 (745)
...|..||||||||||+|... ..+ +.||||+|+|+.+|+++ ..+ +..+++++||+||++ .+++
T Consensus 79 ~~~d~~gHGT~VAgiia~~~~--------~~g-~~GvAp~a~l~~~kv~~-~~g~~~~~~i~~ai~~a~~~~~~~~~~~~ 148 (327)
T 2x8j_A 79 NFSDNNGHGTHVAGTVAAAET--------GSG-VVGVAPKADLFIIKALS-GDGSGEMGWIAKAIRYAVDWRGPKGEQMR 148 (327)
T ss_dssp CCCCSSSHHHHHHHHHHCCCC--------SSB-CCCSSTTCEEEEEECSC-TTSEECHHHHHHHHHHHHHCCCTTSCCCS
T ss_pred CCCCCCCchHHHHHHHhccCC--------CCC-cEeeCCCCEEEEEEeEC-CCCCcCHHHHHHHHHHHHhhcccccCCce
Confidence 356889999999999998731 112 47999999999999998 555 778899999999999 8999
Q ss_pred EEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCC-----CCcccCCCceEEEeecccccceEEEEEeCCCe
Q 042259 273 VLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS-----STLANEAPWMLTVGASTIDRSIVALTQLGNQE 347 (745)
Q Consensus 273 VIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~ 347 (745)
|||||||.... ...+..++.++.++|+++|+||||+|... ..+|+..+++|+|||++.
T Consensus 149 Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~-------------- 211 (327)
T 2x8j_A 149 IITMSLGGPTD---SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF-------------- 211 (327)
T ss_dssp EEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT--------------
T ss_pred EEEECCCcCCC---CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC--------------
Confidence 99999998642 34566666688899999999999999763 456788899999999531
Q ss_pred eeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCC
Q 042259 348 TYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDEL 427 (745)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 427 (745)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCcc
Q 042259 428 FDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVS 507 (745)
Q Consensus 428 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~ 507 (745)
.+.++.||++||.+ ||+|||++
T Consensus 212 --------------------------------------------------~~~~~~fS~~G~~~--------di~APG~~ 233 (327)
T 2x8j_A 212 --------------------------------------------------DLRLSDFTNTNEEI--------DIVAPGVG 233 (327)
T ss_dssp --------------------------------------------------TCCBSCC---CCCC--------SEEEECSS
T ss_pred --------------------------------------------------CCCCCCccCCCCCc--------eEecCcCc
Confidence 12678999999854 99999999
Q ss_pred EEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHhcccccccCCCCcccCCCCC
Q 042259 508 ILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA-----HPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLL 582 (745)
Q Consensus 508 I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 582 (745)
|+++++. +.|..++|||||||+|||++|||+|+ +|.+++.+||++|++||+++.
T Consensus 234 i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g------------ 292 (327)
T 2x8j_A 234 IKSTYLD---------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG------------ 292 (327)
T ss_dssp EEEECST---------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCS------------
T ss_pred eEeecCC---------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCC------------
Confidence 9999987 78999999999999999999999999 999999999999999999763
Q ss_pred CCCCcccCCCCCCccCCCC
Q 042259 583 PADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 583 ~~~~~~~G~G~vn~~~A~~ 601 (745)
.++..||+|+||+.+|++
T Consensus 293 -~~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 293 -FTAQAEGNGFLTLDLVER 310 (327)
T ss_dssp -SCHHHHTTCEECTTHHHH
T ss_pred -CCCCceeeeEECHHHHHH
Confidence 245689999999999988
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-51 Score=428.75 Aligned_cols=263 Identities=26% Similarity=0.318 Sum_probs=210.7
Q ss_pred CCCC-CccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCC--CCCCCCChhhhhhhh
Q 042259 139 SNLG-KGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP--PIDNDGHGTHTASTA 215 (745)
Q Consensus 139 ~~~G-~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~--~~d~~gHGThVAGii 215 (745)
.++| +||+|||||||||++||+|.++ .+..+++...... ..|.+||||||||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~-----------------------~~~~~~~~~~~~~~~d~~~~gHGT~VAGii 59 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA-----------------------DLTVLPTLAPTAARSDGFMSAHGTHVASII 59 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC-----------------------EEEECCCSSCCCCCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC-----------------------eeecCcCCCCCCCCCCCCCCCcccceeehh
Confidence 3578 7999999999999999999864 1222233322122 223568999999999
Q ss_pred cccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC-CCChhhHHHHH
Q 042259 216 AGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPS-LPFFADAMATA 293 (745)
Q Consensus 216 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~-~~~~~~~~~~a 293 (745)
+|+..+ .+.||||+|+|+.+|++....+ ....+++++|+||++++++|||||||... .......+..+
T Consensus 60 ag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~a 129 (282)
T 3zxy_A 60 FGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENA 129 (282)
T ss_dssp HCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHH
T ss_pred hccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHHH
Confidence 987422 2479999999999999863333 67788999999999999999999999753 22334556667
Q ss_pred HHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCC
Q 042259 294 AFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVK 373 (745)
Q Consensus 294 ~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (745)
+..+.++|+++|+||||+|.....++...+++|+|||.+
T Consensus 130 i~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~----------------------------------------- 168 (282)
T 3zxy_A 130 VSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD----------------------------------------- 168 (282)
T ss_dssp HHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC-----------------------------------------
T ss_pred HHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc-----------------------------------------
Confidence 778889999999999999998888889999999999952
Q ss_pred CCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHH
Q 042259 374 NSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIK 453 (745)
Q Consensus 374 ~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 453 (745)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeecccc
Q 042259 454 AYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTS 533 (745)
Q Consensus 454 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTS 533 (745)
..+.++.||+||+. ..||||+|||.+|+++++. +.|..++|||
T Consensus 169 -----------------------~~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~---------~~~~~~sGTS 211 (282)
T 3zxy_A 169 -----------------------DHGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG---------GGTERLSGTA 211 (282)
T ss_dssp -----------------------TTSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT---------SCEEEECSHH
T ss_pred -----------------------CCCccccccCCCCC-----ccccceeccCcceeeecCC---------CceeecCCCc
Confidence 12267889999975 4689999999999999988 7899999999
Q ss_pred chhHHHHHHHHHHHhhC----CCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 534 MSCPHLSGIAALLKSAH----PDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 534 mAaP~VAG~aALl~q~~----p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
||||||||++|||++++ |.++|++||++|++||++++.. .+.....||+|+||+.+|++
T Consensus 212 ~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~---------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 212 FATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD---------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------------CGGGTTCBCCHHHHHH
T ss_pred ccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC---------CCCccCceeeeEeCHHHHHH
Confidence 99999999999999874 7899999999999999876432 23345689999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=430.97 Aligned_cols=265 Identities=28% Similarity=0.438 Sum_probs=219.8
Q ss_pred ccCccC--CCCCccCCCCCC--ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC---
Q 042259 126 FLGLHQ--NSGFWKDSNLGK--GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS--- 198 (745)
Q Consensus 126 ~~g~~~--~~~~~~~~~~G~--gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~--- 198 (745)
.|++.. ...+|+.+ +|+ ||+|+|||||||++||+|.++ +...++|..+.
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~-----------------------~~~~~~~~~~~~~~ 64 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------IAWCVSTLRGKVST 64 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG-----------------------EEEEEECGGGCCBC
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc-----------------------cccCccccCCccCC
Confidence 355543 56699998 999 999999999999999999853 33444554331
Q ss_pred --CCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhC------
Q 042259 199 --EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEE------ 269 (745)
Q Consensus 199 --~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~------ 269 (745)
.+..|..||||||||||+|... ..+ +.||||+|+|+.+|+++ ..+ +..++++++|+||+++
T Consensus 65 ~~~~~~d~~gHGT~vAgiia~~~n--------~~g-~~GvAp~a~l~~~~v~~-~~g~~~~~~i~~ai~~a~~~~~~~~~ 134 (320)
T 2z30_A 65 KLRDCADQNGHGTHVIGTIAALNN--------DIG-VVGVAPGVQIYSVRVLD-ARGSGSYSDIAIGIEQAILGPDGVAD 134 (320)
T ss_dssp CHHHHBCSSSHHHHHHHHHHCCSS--------SBS-CCCSSTTCEEEEEECSC-TTSEEEHHHHHHHHHHHHHTTTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHcccC--------CCc-eEeeCCCCEEEEEEeeC-CCCCccHHHHHHHHHHHHhCcccccc
Confidence 1236789999999999998621 111 47999999999999998 555 7788999999999987
Q ss_pred --------------CCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeeccccc
Q 042259 270 --------------GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDR 335 (745)
Q Consensus 270 --------------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~ 335 (745)
+++|||||||.... ...+..++.++.++|+++|+||||+|.....+++..+++|+|||++.
T Consensus 135 ~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~-- 209 (320)
T 2z30_A 135 KDGDGIIAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS-- 209 (320)
T ss_dssp TTSSSCCTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT--
T ss_pred cccccccccccccCCceEEEecCCCCCC---CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCC--
Confidence 99999999998642 24455566678899999999999999988888999999999999521
Q ss_pred ceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhc
Q 042259 336 SIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDA 415 (745)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~ 415 (745)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCC
Q 042259 416 GGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPG 495 (745)
Q Consensus 416 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g 495 (745)
.+.++.||++||
T Consensus 210 --------------------------------------------------------------~~~~~~~S~~g~------ 221 (320)
T 2z30_A 210 --------------------------------------------------------------NDNIASFSNRQP------ 221 (320)
T ss_dssp --------------------------------------------------------------TSCBCTTSCSSC------
T ss_pred --------------------------------------------------------------CCCcCcccCCCC------
Confidence 126789999996
Q ss_pred CccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHH
Q 042259 496 ILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAH-------------PDWSPAAIKSAI 562 (745)
Q Consensus 496 ~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------------p~~s~~~ik~~L 562 (745)
+|+|||++|+++++. +.|..++|||||||||||++|||+|++ |++++.+||++|
T Consensus 222 ----~v~APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L 288 (320)
T 2z30_A 222 ----EVSAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGIL 288 (320)
T ss_dssp ----SEEEECSSEEEEETT---------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHH
T ss_pred ----CEEeCCCCeEEeccC---------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHH
Confidence 789999999999987 789999999999999999999999998 999999999999
Q ss_pred hcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 563 MTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 563 ~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
++||+++... ..+..||||+||+.+|++
T Consensus 289 ~~ta~~~~~~-----------g~~~~~G~G~vd~~~A~~ 316 (320)
T 2z30_A 289 HITADDLGPT-----------GWDADYGYGVVRAALAVQ 316 (320)
T ss_dssp HHHSBCCSSS-----------SSBTTTBTCBCCHHHHHH
T ss_pred HhhCccCCCC-----------CCCCCcCCceeCHHHHHH
Confidence 9999987432 345689999999999986
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=437.09 Aligned_cols=266 Identities=21% Similarity=0.149 Sum_probs=218.7
Q ss_pred CCCCccCCCCCC--ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCC-----CCCCC
Q 042259 132 NSGFWKDSNLGK--GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSE-----PPIDN 204 (745)
Q Consensus 132 ~~~~~~~~~~G~--gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~-----~~~d~ 204 (745)
...+|+. .+|+ ||+||||||||| +||+|.++ +...++|..+.. .+.|.
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~d~ 86 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS-----------------------EFAKFSFTQDGSPFPVKKSEAL 86 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC-----------------------EEEEEECBTTCCSSCCSSSHHH
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC-----------------------cccCCcccCCCCCCCCCCCCCC
Confidence 4568988 8999 999999999999 99999853 445566654322 44567
Q ss_pred CCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhC------CCcEEEEcc
Q 042259 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEE------GVDVLSISL 278 (745)
Q Consensus 205 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~------g~dVIn~S~ 278 (745)
.||||||||||+|+. | +.||||+|+|+.+|+++ ..+.. ++++||+||+++ +++||||||
T Consensus 87 ~gHGT~vAgiia~~~-------g-----~~GvAp~a~l~~~~v~~-~~~~~--~~~~ai~~a~~~~~~~~~~~~Vin~S~ 151 (347)
T 2iy9_A 87 YIHGTAMASLIASRY-------G-----IYGVYPHALISSRRVIP-DGVQD--SWIRAIESIMSNVFLAPGEEKIINISG 151 (347)
T ss_dssp HHHHHHHHHHHHCSS-------S-----SCCSSTTCEEEEEECCS-SBCTT--HHHHHHHHHHTCTTSCTTEEEEEEESS
T ss_pred CCcHHHHHHHHhccc-------C-----CcccCCCCEEEEEEEec-CCCHH--HHHHHHHHHHhhhhcccCCceEEEecc
Confidence 899999999999871 1 37999999999999998 44433 999999999999 999999999
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCC-------CCCcccCCC----------ceEEEeeccc--ccceEE
Q 042259 279 GSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPN-------SSTLANEAP----------WMLTVGASTI--DRSIVA 339 (745)
Q Consensus 279 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~vitVga~~~--~~~~~~ 339 (745)
|........+.+..++..+.++|+++|+||||+|.. ...+++..+ ++|+|||++. +...
T Consensus 152 G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~~-- 229 (347)
T 2iy9_A 152 GQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGET-- 229 (347)
T ss_dssp CBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTSC--
T ss_pred ccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCCce--
Confidence 976544456677777888899999999999999985 456777888 9999999642 1100
Q ss_pred EEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceE
Q 042259 340 LTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAA 419 (745)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g 419 (745)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccC
Q 042259 420 MILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKP 499 (745)
Q Consensus 420 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KP 499 (745)
....+.++.||++||+ ||
T Consensus 230 -------------------------------------------------------~~~~~~~~~fS~~G~~-------~~ 247 (347)
T 2iy9_A 230 -------------------------------------------------------PVLHGGGITGSRFGNN-------WV 247 (347)
T ss_dssp -------------------------------------------------------CCBCCCSSSCBCBCTT-------TC
T ss_pred -------------------------------------------------------ecccCCCCCCCCCCCC-------CC
Confidence 0001255799999995 67
Q ss_pred ceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCC
Q 042259 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNH 579 (745)
Q Consensus 500 Di~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 579 (745)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+
T Consensus 248 di~APG~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~------ 312 (347)
T 2iy9_A 248 DIAAPGQNITFLRPD---------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV------ 312 (347)
T ss_dssp SEEEECSSEEEECTT---------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT------
T ss_pred EEEeCCCCeEeecCC---------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC------
Confidence 999999999999987 78999999999999999999999999999999999999999999875431
Q ss_pred CCCCCCCcccCCCCCCccCCCCC
Q 042259 580 HLLPADLFAVGAGHVNPSKANDP 602 (745)
Q Consensus 580 ~~~~~~~~~~G~G~vn~~~A~~~ 602 (745)
...||+|+||+.+|++.
T Consensus 313 ------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 313 ------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp ------TTSGGGEECCHHHHHHH
T ss_pred ------CccccCCEecHHHHHHH
Confidence 25899999999999984
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-50 Score=428.22 Aligned_cols=269 Identities=25% Similarity=0.334 Sum_probs=217.3
Q ss_pred CCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC-CCCCCCCCChhhhh
Q 042259 134 GFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS-EPPIDNDGHGTHTA 212 (745)
Q Consensus 134 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~-~~~~d~~gHGThVA 212 (745)
++|+....++||+|||||||||++||+|.++. +....++..+. ....|..|||||||
T Consensus 12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~----------------------~~~~~~~~~~~~~~~~d~~gHGThVA 69 (306)
T 4h6w_A 12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGAD----------------------LTRLPSLVSGEANANGSMSTHGTHVA 69 (306)
T ss_dssp HHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE----------------------EEECC----------CCCCHHHHHHH
T ss_pred HHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc----------------------ccCCCcccCCCCCCCCCCCCchHHHH
Confidence 49999877799999999999999999998642 22233333322 23446789999999
Q ss_pred hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC-CCChhhHH
Q 042259 213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPS-LPFFADAM 290 (745)
Q Consensus 213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~-~~~~~~~~ 290 (745)
|||+|+... .+.||||+|+|+.+|++.+..+ .....++++|+||++++++|||+|||... .......+
T Consensus 70 Giiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~~~~~~~ 139 (306)
T 4h6w_A 70 SIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTWL 139 (306)
T ss_dssp HHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHH
T ss_pred HHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCCCccHHH
Confidence 999987421 2479999999999999873333 67888999999999999999999999643 23344556
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 291 ATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 291 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
..++..+.++|+++|+||||+|.....+++..+++|+|||++.
T Consensus 140 ~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------- 182 (306)
T 4h6w_A 140 EKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD------------------------------------- 182 (306)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT-------------------------------------
T ss_pred HHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC-------------------------------------
Confidence 6777788999999999999999988888889999999999521
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
.+.+++||++|+. ..||||+|||++|+++++. +.|..++
T Consensus 183 ---------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~---------~~~~~~s 221 (306)
T 4h6w_A 183 ---------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILGAKPN---------GGTIRLS 221 (306)
T ss_dssp ---------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEEECTT---------SCEEEEC
T ss_pred ---------------------------CCCccccccccCC-----cCcceeecCCcCcccccCC---------CceeccC
Confidence 1266789999965 4689999999999999988 7899999
Q ss_pred cccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 531 GTSMSCPHLSGIAALLKSA----HPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~----~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
|||||||||||++|||+++ +|.++|+|||++|++||+++...+ ......||+|+||+.+|++
T Consensus 222 GTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~---------~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 222 GTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD---------TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT---------CSCGGGGTTCBCCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCCCCcceeecCHHHHHH
Confidence 9999999999999999864 699999999999999999875443 1234579999999999997
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=408.09 Aligned_cols=235 Identities=29% Similarity=0.421 Sum_probs=204.0
Q ss_pred CCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhh
Q 042259 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTA 212 (745)
Q Consensus 133 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVA 212 (745)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++...+.|..|||||||
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~~~~~~d~~gHGT~vA 75 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR-----------------------SVSGYDFVDNDADSSDCNGHGTHVA 75 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC-----------------------EEEEEETTTTBSCCCCSSSHHHHHH
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC-----------------------ccccccccCCCCCCCCCCCcHHHHH
Confidence 45899999999999999999999999999853 4556778766556788999999999
Q ss_pred hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhC--CCcEEEEccCCCCCCChhhH
Q 042259 213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEE--GVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~--g~dVIn~S~G~~~~~~~~~~ 289 (745)
|||+|.. .||||+|+|+.+|+++ ..+ +..+++++||+|++++ +++|||||||.... ..
T Consensus 76 giia~~~--------------~GvAp~a~l~~~kv~~-~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~~----~~ 136 (284)
T 1sh7_A 76 GTIGGSQ--------------YGVAKNVNIVGVRVLS-CSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQS----TA 136 (284)
T ss_dssp HHHHCTT--------------TCSSTTCEEEEEECBC-TTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSCC----HH
T ss_pred HHHhccc--------------CCcCCCCEEEEEEeeC-CCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCCC----HH
Confidence 9999873 5999999999999998 544 7888999999999974 79999999998743 45
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCCCC-CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeE
Q 042259 290 MATAAFTASQKGILVSCSAGNSGPNSS-TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLV 368 (745)
Q Consensus 290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (745)
+..++.++.++|+++|+||||+|.... .+++..+++|+||+++.
T Consensus 137 ~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------------------------------- 181 (284)
T 1sh7_A 137 LDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS----------------------------------- 181 (284)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT-----------------------------------
T ss_pred HHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC-----------------------------------
Confidence 556666888999999999999997653 45788899999999521
Q ss_pred ecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHh
Q 042259 369 YPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAA 448 (745)
Q Consensus 369 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceee
Q 042259 449 GERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTM 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
.+.++.||++||.+ ||+|||++|+++++. +.|..
T Consensus 182 -----------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~---------~~~~~ 215 (284)
T 1sh7_A 182 -----------------------------SDSRSSFSNWGSCV--------DLFAPGSQIKSAWYD---------GGYKT 215 (284)
T ss_dssp -----------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTT---------SSEEE
T ss_pred -----------------------------CCCcCcccCCCCcc--------EEEeccCCeEEecCC---------CCEEE
Confidence 12678999999976 999999999999887 68999
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhccccccc
Q 042259 529 ISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVN 570 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 570 (745)
++|||||||||||++|||+|++|+|+++|||++|++||++..
T Consensus 216 ~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 216 ISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred ccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 999999999999999999999999999999999999998764
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-49 Score=437.69 Aligned_cols=287 Identities=28% Similarity=0.359 Sum_probs=224.0
Q ss_pred CCcc-CCCCCCccEEEEecCCCCC------CCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCC
Q 042259 134 GFWK-DSNLGKGVIIGVLDMGITP------GHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206 (745)
Q Consensus 134 ~~~~-~~~~G~gv~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~g 206 (745)
.+|. .+++|+||+|||||||||+ .||+|.++ +...++|.+. ..+.|..|
T Consensus 12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~-----------------------i~~~~~~~~~-~~~~d~~g 67 (434)
T 1wmd_A 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK-----------------------ITALYALGRT-NNANDTNG 67 (434)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC-----------------------EEEEEETTTT-TCCCCSSS
T ss_pred hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC-----------------------EeeeccccCC-CCCCCCCC
Confidence 4887 7999999999999999999 79999753 5556677654 46778999
Q ss_pred ChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCC---CHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 042259 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGC---PESIVNAAIDAAVEEGVDVLSISLGSPSL 283 (745)
Q Consensus 207 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~---~~~~i~~ai~~a~~~g~dVIn~S~G~~~~ 283 (745)
|||||||||+|+.. + +.||||+|+|+.+|+++ ..+. ...++.++|++++++|++|||||||....
T Consensus 68 HGT~VAgiiag~g~----------~-~~GvAp~a~l~~~~v~~-~~g~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~ 135 (434)
T 1wmd_A 68 HGTHVAGSVLGNGS----------T-NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVN 135 (434)
T ss_dssp HHHHHHHHHHCCSS----------S-SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCT
T ss_pred cHHHHHHHHHcCCC----------C-ceeeCCCCEEEEEEeec-CCCccccccHHHHHHHHHHHhcCCeEEEecCCCCcC
Confidence 99999999998631 1 47999999999999998 5542 45679999999999999999999998642
Q ss_pred CChhhHHHHHHHHH-hcCCcEEEEccCCCCCCC--CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCC
Q 042259 284 PFFADAMATAAFTA-SQKGILVSCSAGNSGPNS--STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDF 360 (745)
Q Consensus 284 ~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (745)
..+ +....++.++ .++|+++|+||||+|... ...++.++++|+|||++..+..
T Consensus 136 ~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~----------------------- 191 (434)
T 1wmd_A 136 GAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS----------------------- 191 (434)
T ss_dssp TCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG-----------------------
T ss_pred CcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcc-----------------------
Confidence 211 2223333344 589999999999999864 4567889999999996422100
Q ss_pred CCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcccc
Q 042259 361 PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p 440 (745)
.+.
T Consensus 192 ---------------------------------------~~~-------------------------------------- 194 (434)
T 1wmd_A 192 ---------------------------------------FGS-------------------------------------- 194 (434)
T ss_dssp ---------------------------------------GCG--------------------------------------
T ss_pred ---------------------------------------cCc--------------------------------------
Confidence 000
Q ss_pred EEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCcc--
Q 042259 441 AVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEEN-- 518 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~-- 518 (745)
-....+.+++|||+||+. ++++||||+|||++|+++++.....
T Consensus 195 ---------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~~ 239 (434)
T 1wmd_A 195 ---------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSS 239 (434)
T ss_dssp ---------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGG
T ss_pred ---------------------------------ccCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCCCCcc
Confidence 001234789999999998 7999999999999999998642100
Q ss_pred -CCCcccceeeeccccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259 519 -ITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDW-----SPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG 592 (745)
Q Consensus 519 -~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~-----s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 592 (745)
.....+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. .+++..||||
T Consensus 240 ~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-----------~~~~~~~G~G 308 (434)
T 1wmd_A 240 FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWG 308 (434)
T ss_dssp SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTC
T ss_pred cccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-----------CCCCccCCcC
Confidence 00113689999999999999999999999998865 899999999999987521 2466789999
Q ss_pred CCCccCCCCCC
Q 042259 593 HVNPSKANDPG 603 (745)
Q Consensus 593 ~vn~~~A~~~~ 603 (745)
++|+.+|++..
T Consensus 309 ~vd~~~a~~~~ 319 (434)
T 1wmd_A 309 RVTLDKSLNVA 319 (434)
T ss_dssp BCCHHHHHTCE
T ss_pred eEeHHHhcccc
Confidence 99999999754
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=458.57 Aligned_cols=405 Identities=21% Similarity=0.244 Sum_probs=266.5
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCC---CCCCCCCChhhhhhhhccccc
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSE---PPIDNDGHGTHTASTAAGNFV 220 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~---~~~d~~gHGThVAGiiag~~~ 220 (745)
+|+|||||||+|.+|++..-- ..|+...+.+. + .+.+-+..++.++.. ...|++||||||||||||..
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg~-F-~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~- 284 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETRN-V-DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH- 284 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCCE-E-SSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC-
T ss_pred CEEEEEEeCCCCCCccccccc------ccccccccccc-c-ccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC-
Confidence 699999999998766654310 01111111000 0 112223333332211 12478899999999999985
Q ss_pred CCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHh-----CCCcEEEEccCCCCCCChhhHHHHH
Q 042259 221 NGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVE-----EGVDVLSISLGSPSLPFFADAMATA 293 (745)
Q Consensus 221 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~-----~g~dVIn~S~G~~~~~~~~~~~~~a 293 (745)
++ ..+.||||+|+|+.+|+++...+ .....++.+|.+|++ .|++|||||||........+.+..+
T Consensus 285 N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~~~~~~~l~~a 356 (1354)
T 3lxu_X 285 SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGEL 356 (1354)
T ss_dssp SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCSCSSCCHHHHH
T ss_pred CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCCCCccHHHHHH
Confidence 21 12479999999999999983223 256678888888777 7999999999987543334455666
Q ss_pred HHHHh-cCCcEEEEccCCCCCCCCC--ccc--CCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeE
Q 042259 294 AFTAS-QKGILVSCSAGNSGPNSST--LAN--EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLV 368 (745)
Q Consensus 294 ~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (745)
+.++. ++|+++|+||||+|..... +++ .++++|+|||++.+......
T Consensus 357 I~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~---------------------------- 408 (1354)
T 3lxu_X 357 MNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE---------------------------- 408 (1354)
T ss_dssp HHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------------------
T ss_pred HHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccc----------------------------
Confidence 66765 8999999999999986544 455 48999999996432210000
Q ss_pred ecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHh
Q 042259 369 YPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAA 448 (745)
Q Consensus 369 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
|.
T Consensus 409 ys------------------------------------------------------------------------------ 410 (1354)
T 3lxu_X 409 YA------------------------------------------------------------------------------ 410 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceee
Q 042259 449 GERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTM 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
......+.+++|||+||+. ++++||||+|||++|+++..... +.|..
T Consensus 411 ------------------------~~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-------~~y~~ 457 (1354)
T 3lxu_X 411 ------------------------MREKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-------SKSQL 457 (1354)
T ss_dssp -------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC----------------------C
T ss_pred ------------------------cccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC-------Cceec
Confidence 0001124789999999998 78999999999999999865422 67899
Q ss_pred eccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCc
Q 042259 529 ISGTSMSCPHLSGIAALLKS----AHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGL 604 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~l 604 (745)
++|||||||||||++|||++ .+|+|++.+||++|++||+++.. .+++.||||+||+.+|++..+
T Consensus 458 ~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~------------~~~~~~G~GlLDa~~AV~~a~ 525 (1354)
T 3lxu_X 458 MNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------VDPFAQGHGLLNVEKAFEHLT 525 (1354)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT------------SCTTTSSSSBCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC------------CCcccccCCEeCHHHHHHHHH
Confidence 99999999999999999986 79999999999999999998743 245689999999999999999
Q ss_pred ccccccccceeecccCCCC-ccceeeeecccccccccCcccccccCCCceeeecCCccEEEEEEEEecC-------CC-C
Q 042259 605 VYEISHDDYVRYLCGKNYT-DQQIEGIVDHDVQCSKVSSIAEAELNYPSFSVKLGSSPQTYNRTVTNVG-------QD-N 675 (745)
Q Consensus 605 v~d~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~n~~-------~~-~ 675 (745)
.|+....+++.|+|..+.. ...|.+. .. .. ....+++++|+.+= .. .
T Consensus 526 ~~~~~p~~~v~f~~~v~~~~~rgIylR--~~------------~~----------~~~~~~tv~V~p~f~~~~~~~~~~~ 581 (1354)
T 3lxu_X 526 EHRQSKDNMLRFSVRVGNNADKGIHLR--QG------------VQ----------RNSIDYNVYIEPIFYNDKEADPKDK 581 (1354)
T ss_dssp TTTTCGGGGEEEEEEETTTTBSSEEEC--SS------------CC----------CSCEEEEEEEEEEESSCSCSSSTTC
T ss_pred hcCCCCccceEEEEEecCCCCCceEEe--cc------------cc----------CCceEEEEEEeeeecCcccCChhhc
Confidence 9999999999999998743 2222221 00 00 11233334332211 11 1
Q ss_pred eeE--EEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEEc-----CceEEEeeEEEEeC
Q 042259 676 SFY--THHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVS-----ATHTVRSPIAIGFE 745 (745)
Q Consensus 676 ~ty--~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~-----~~~~v~~P~~~~~~ 745 (745)
..| ++.+.... --|+ -|..|.+ .++.++|.|++.+...+. ..+++.|...| .+..+|+||.|.-|
T Consensus 582 i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~L~~-G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P 653 (1354)
T 3lxu_X 582 FNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTGLQP-GVHSAVIRAYDTDCVQKGSLFEIPVTVVQP 653 (1354)
T ss_dssp SCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGGCCS-EEEEEEEEEEESSCTTSCCSEEEEEEEEEC
T ss_pred cceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCCCCCC-cceeEEEEEEEcCCcccCceEEeeEEEEee
Confidence 111 22222211 1222 3666666 378899999999998766 78999998775 47999999988754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=421.42 Aligned_cols=289 Identities=28% Similarity=0.360 Sum_probs=216.6
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccc----c-CCcccCcceeeeeeCC----CC----C
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCE----L-EGANCNNKIIGARNFL----NK----S 198 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~----~-~~~~~n~ki~~~~~~~----~~----~ 198 (745)
...+|+.+++|+||+|+||||||+ +||+|.++-.. .|+-... . +.............+. .+ .
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPR 95 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTTCGG
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccccCCCCcc
Confidence 456999999999999999999998 99999864221 1110000 0 0000000000000000 00 0
Q ss_pred CCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh----------
Q 042259 199 EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE---------- 268 (745)
Q Consensus 199 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~---------- 268 (745)
....|..||||||||||+|...+.. + +.||||+|+|+.+|++. ..++...+++++|+|+++
T Consensus 96 ~~~~d~~gHGT~vAgiia~~~~~~~-------g-~~GvAp~a~l~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~~~~~~~ 166 (340)
T 3lpc_A 96 KERSDSSWHGSHVAGTIAAVTNNRI-------G-VAGVAYGAKVVPVRALG-RCGGYDSDISDGLYWAAGGRIAGIPENR 166 (340)
T ss_dssp GSCBCCCCHHHHHHHHHHCCCSSSS-------S-CCCTTTTSEEEEEECCB-TTBCCHHHHHHHHHHHHTCCCTTSCCCS
T ss_pred cCCCCCCCCHHHHHHHHHccCCCCC-------c-ceeecCCCEEEEEEEec-CCCCcHHHHHHHHHHHhccccccccccc
Confidence 2346788999999999999753322 2 47999999999999998 666888999999999998
Q ss_pred CCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCC-CcccCCCceEEEeecccccceEEEEEeCCCe
Q 042259 269 EGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS-TLANEAPWMLTVGASTIDRSIVALTQLGNQE 347 (745)
Q Consensus 269 ~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~ 347 (745)
.+++|||||||.... ....+..++.++.++|+++|+||||+|.... .+++..+++|+|||++
T Consensus 167 ~~~~Vin~S~G~~~~--~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------- 229 (340)
T 3lpc_A 167 NPAKVINMSLGSDGQ--CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT--------------- 229 (340)
T ss_dssp SCCSEEEECCCEESC--CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC---------------
T ss_pred CCCeEEEeCcCCCCC--cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC---------------
Confidence 889999999997532 2234555666888999999999999997754 4678889999999952
Q ss_pred eeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCC
Q 042259 348 TYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDEL 427 (745)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 427 (745)
T Consensus 230 -------------------------------------------------------------------------------- 229 (340)
T 3lpc_A 230 -------------------------------------------------------------------------------- 229 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCcc
Q 042259 428 FDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVS 507 (745)
Q Consensus 428 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~ 507 (745)
..+.++.||++||. |||+|||.+
T Consensus 230 -------------------------------------------------~~~~~~~~S~~g~~--------~di~ApG~~ 252 (340)
T 3lpc_A 230 -------------------------------------------------SRGIRASFSNYGVD--------VDLAAPGQD 252 (340)
T ss_dssp -------------------------------------------------TTSSBCTTCCBSTT--------CCEEEECSS
T ss_pred -------------------------------------------------CCCCcCCCCCCCCC--------ceEEecCCC
Confidence 11267899999974 599999999
Q ss_pred EEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHhcccccccCCCCcccCCCCCC
Q 042259 508 ILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA-H---PDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLP 583 (745)
Q Consensus 508 I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 583 (745)
|+++++.... ......|..++|||||||||||++|||+|+ + |.+++++||++|++||+++..
T Consensus 253 i~s~~~~~~~--~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~------------ 318 (340)
T 3lpc_A 253 ILSTVDSGTR--RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG------------ 318 (340)
T ss_dssp EEEEEESCSS--SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS------------
T ss_pred eecccCCCCc--CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC------------
Confidence 9999876331 112256999999999999999999999998 5 999999999999999997632
Q ss_pred CCCcccCCCCCCccCCCCC
Q 042259 584 ADLFAVGAGHVNPSKANDP 602 (745)
Q Consensus 584 ~~~~~~G~G~vn~~~A~~~ 602 (745)
.+...||||+||+.+||+.
T Consensus 319 ~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 319 RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp CCSSCCCSSBCCHHHHHHH
T ss_pred CCCCCcccceecHHHHHHH
Confidence 2456899999999999873
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=399.14 Aligned_cols=236 Identities=32% Similarity=0.424 Sum_probs=202.7
Q ss_pred CCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhh
Q 042259 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTA 212 (745)
Q Consensus 133 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVA 212 (745)
..+|..+++|+||+|+|||||||++||+|.++ +..+++|.++..++.|..|||||||
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~-----------------------~~~~~d~~~~~~~~~d~~gHGT~vA 77 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR-----------------------ASSGYDFIDNDYDATDCNGHGTHVA 77 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTTTBSCCCCSSSHHHHHH
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc-----------------------cccCeecCCCCCCCCCCCCcHHHHH
Confidence 35799999999999999999999999999853 4456777765456788999999999
Q ss_pred hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHh--CCCcEEEEccCCCCCCChhhH
Q 042259 213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVE--EGVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~--~g~dVIn~S~G~~~~~~~~~~ 289 (745)
|||+|.. .||||+|+|+.+|+++ +.+ +..++++++|+|+++ .+++|||||||.... +.
T Consensus 78 giia~~~--------------~GvAp~a~i~~~~v~~-~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~~----~~ 138 (278)
T 2b6n_A 78 GTIGGST--------------YGVAKNVNVVGVRVLN-CSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGAS----QA 138 (278)
T ss_dssp HHHHCTT--------------TCSSTTCEEEEEECSC-TTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEECC----HH
T ss_pred HHHHCCC--------------cCCCCCCeEEEEEEEC-CCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCcC----HH
Confidence 9999862 5999999999999998 544 788899999999997 599999999998653 44
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCCCC-CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeE
Q 042259 290 MATAAFTASQKGILVSCSAGNSGPNSS-TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLV 368 (745)
Q Consensus 290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (745)
+..++.++.++|+++|+||||+|.... .+|+..+++|+||+++.
T Consensus 139 ~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------------------------------- 183 (278)
T 2b6n_A 139 TDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS----------------------------------- 183 (278)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-----------------------------------
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC-----------------------------------
Confidence 555666888999999999999998754 35778899999999521
Q ss_pred ecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHh
Q 042259 369 YPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAA 448 (745)
Q Consensus 369 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceee
Q 042259 449 GERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTM 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
.+.++.||++||.. ||+|||++|+++++... ..|..
T Consensus 184 -----------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~~-------~~~~~ 219 (278)
T 2b6n_A 184 -----------------------------NDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN-------SATNT 219 (278)
T ss_dssp -----------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTST-------TCEEE
T ss_pred -----------------------------CCCcCCcCCCCCCC--------eEEeCCCCeECcccCCC-------CCEEE
Confidence 12678999999865 99999999999987532 67899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccc
Q 042259 529 ISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIV 569 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~ 569 (745)
++|||||||||||++|||+|++|+|++.+||++|++||++.
T Consensus 220 ~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 220 ISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred eCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 99999999999999999999999999999999999999865
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-48 Score=402.24 Aligned_cols=239 Identities=32% Similarity=0.450 Sum_probs=203.3
Q ss_pred CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAST 214 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGi 214 (745)
.|.. .+|+||+|+|||||||++||+|.++ +...++|. ..+.|..|||||||||
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~-----------------------~~~~~~~~---~~~~d~~gHGT~vAgi 76 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYY---YSSRDGNGHGTHCAGT 76 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESS---SCSSCSSSHHHHHHHH
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCc-----------------------cccccCCC---CCCCCCCCCHHHHHHH
Confidence 3443 7899999999999999999999853 44566776 2467889999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCC-------cEEEEccCCCCCCCh
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGV-------DVLSISLGSPSLPFF 286 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~-------dVIn~S~G~~~~~~~ 286 (745)
|+|+. .||||+|+|+.+|+++ ..+ +..++++++|+|++++++ +|||||||...
T Consensus 77 ia~~~--------------~GvAp~a~i~~~~v~~-~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~~---- 137 (279)
T 2pwa_A 77 VGSRT--------------YGVAKKTQLFGVKVLD-DNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGY---- 137 (279)
T ss_dssp HHCTT--------------TCSSTTCEEEEEECSC-TTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC----
T ss_pred HHhcc--------------cccCCCCEEEEEEeEc-CCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCCC----
Confidence 99862 6999999999999998 555 788999999999999887 99999999753
Q ss_pred hhHHHHHHHHHhcCCcEEEEccCCCCCCCC-CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCce
Q 042259 287 ADAMATAAFTASQKGILVSCSAGNSGPNSS-TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQL 365 (745)
Q Consensus 287 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (745)
.+.+..++.++.++|+++|+||||+|.... .+|+..+++|+|||++.
T Consensus 138 ~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------------------------- 185 (279)
T 2pwa_A 138 SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR-------------------------------- 185 (279)
T ss_dssp CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------------------
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC--------------------------------
Confidence 345666666888999999999999998653 45788899999999521
Q ss_pred eeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEc
Q 042259 366 PLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVS 445 (745)
Q Consensus 366 ~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 445 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccc
Q 042259 446 YAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKST 525 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~ 525 (745)
.+.++.||++||.+ ||+|||++|+++++. +.
T Consensus 186 --------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~---------~~ 216 (279)
T 2pwa_A 186 --------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG---------GS 216 (279)
T ss_dssp --------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEETT---------TE
T ss_pred --------------------------------CCCcCCcCCCCCcc--------eEEEecCCeEEeecC---------CC
Confidence 12678999999975 999999999999987 68
Q ss_pred eeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCc
Q 042259 526 FTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNP 596 (745)
Q Consensus 526 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 596 (745)
|..++|||||||||||++|||+|+ |++++.+||++|++||++... ..+|+|.+|+
T Consensus 217 ~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~---------------~~~~~g~~n~ 271 (279)
T 2pwa_A 217 TRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL---------------SNIPFGTVNL 271 (279)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC---------------BSCCTTSCCE
T ss_pred EEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc---------------CCCCCCCccE
Confidence 999999999999999999999999 999999999999999987522 2467888777
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=400.43 Aligned_cols=237 Identities=32% Similarity=0.439 Sum_probs=203.2
Q ss_pred CCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhh
Q 042259 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTA 212 (745)
Q Consensus 133 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVA 212 (745)
..+|..+.+|+||+|+|||||||++||+|.++ +...++|.. ....|..|||||||
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~--~~~~d~~gHGT~vA 75 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR-----------------------ARVGYDALG--GNGQDCNGHGTHVA 75 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTS--SCSCCSSSHHHHHH
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC-----------------------eeccccCCC--CCCCCCCCCHHHHH
Confidence 45899999999999999999999999999753 445566665 45678899999999
Q ss_pred hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhC--CCcEEEEccCCCCCCChhhHH
Q 042259 213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEE--GVDVLSISLGSPSLPFFADAM 290 (745)
Q Consensus 213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~--g~dVIn~S~G~~~~~~~~~~~ 290 (745)
|||+|.. .||||+|+|+.+|+++........+++++++|++++ +++|||||||.... ..+
T Consensus 76 giiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~~----~~~ 137 (276)
T 4dzt_A 76 GTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVS----TAL 137 (276)
T ss_dssp HHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEECC----HHH
T ss_pred HHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCCC----HHH
Confidence 9999872 699999999999999833348889999999999987 89999999997643 455
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCCCc-ccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEe
Q 042259 291 ATAAFTASQKGILVSCSAGNSGPNSSTL-ANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVY 369 (745)
Q Consensus 291 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (745)
..++.++.++|+++|+||||+|...... ++..+++|+||+.+
T Consensus 138 ~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------------------------- 180 (276)
T 4dzt_A 138 DNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT------------------------------------- 180 (276)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-------------------------------------
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC-------------------------------------
Confidence 6666688899999999999999876543 78889999999942
Q ss_pred cCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhH
Q 042259 370 PGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAG 449 (745)
Q Consensus 370 ~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g 449 (745)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeee
Q 042259 450 ERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMI 529 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~ 529 (745)
..+.+++||++||.. ||+|||++|+++++... ..|..+
T Consensus 181 ---------------------------~~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~-------~~~~~~ 218 (276)
T 4dzt_A 181 ---------------------------SSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD-------TATQTL 218 (276)
T ss_dssp ---------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTSS-------SCEEEE
T ss_pred ---------------------------CCCCcCCcCCCCCCc--------eEEeCCCCeEccccCCC-------CceEEe
Confidence 122678999999976 99999999999988643 579999
Q ss_pred ccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccC
Q 042259 530 SGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNL 571 (745)
Q Consensus 530 sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~ 571 (745)
+|||||||+|||++|||+|++|++++++||++|++||++...
T Consensus 219 sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 219 NGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred eEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 999999999999999999999999999999999999998643
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-47 Score=423.75 Aligned_cols=287 Identities=18% Similarity=0.191 Sum_probs=215.3
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCC------CCCCCC
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSE------PPIDND 205 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~------~~~d~~ 205 (745)
...+|+.+++|+||+|||||||||++||+|.++-.. ...++|.++.. .+.|..
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~~---------------------~~~~d~~~~~~~p~~~~~~~d~~ 85 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP---------------------GASFDVNDQDPDPQPRYTQMNDN 85 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG---------------------GGCEETTTTBSCCCCCCCTTCTT
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccCc---------------------cCcccccCCCCCCCCccCCCCCC
Confidence 456999999999999999999999999999864110 01344543321 345789
Q ss_pred CChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC
Q 042259 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLP 284 (745)
Q Consensus 206 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~ 284 (745)
+|||||||||+|...++. + +.||||+|+|+.+|+++ +..+++++|++++++ ++++|||||||.....
T Consensus 86 gHGT~vAGiiaa~~~n~~-------g-~~GvAp~a~i~~~rv~~----g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~ 153 (471)
T 1p8j_A 86 RHGTRCAGEVAAVANNGV-------C-GVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASWGPEDDG 153 (471)
T ss_dssp CHHHHHHHHHHCCSSSSS-------S-CCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSS
T ss_pred CcHHHHHHHHHeeccCCC-------C-CEEECCCCeEEEEEccC----CchhHHHHHHHhhhccCCCeEEEeccCcCCCC
Confidence 999999999999753321 1 37999999999999997 346789999999999 8999999999975321
Q ss_pred ----ChhhHHHHHHHHHh-----cCCcEEEEccCCCCCCCCC----cccCCCceEEEeecccccceEEEEEeCCCeeeee
Q 042259 285 ----FFADAMATAAFTAS-----QKGILVSCSAGNSGPNSST----LANEAPWMLTVGASTIDRSIVALTQLGNQETYDG 351 (745)
Q Consensus 285 ----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~ 351 (745)
.....+..++.++. .+|+++|+||||+|..... ....++++|+|||++.
T Consensus 154 ~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~------------------ 215 (471)
T 1p8j_A 154 KTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ------------------ 215 (471)
T ss_dssp SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT------------------
T ss_pred CcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC------------------
Confidence 11222333333443 4799999999999976432 1234588999999521
Q ss_pred eeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc
Q 042259 352 ETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG 431 (745)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 431 (745)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEec
Q 042259 432 TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAA 511 (745)
Q Consensus 432 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa 511 (745)
.+.+++||++||.. ....+|...+||..|+++
T Consensus 216 ----------------------------------------------~g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st 247 (471)
T 1p8j_A 216 ----------------------------------------------FGNVPWYSEACSST--LATTYSSGNQNEKQIVTT 247 (471)
T ss_dssp ----------------------------------------------TSCCCTTCCBCTTC--CEEEECCCSTTSCCEEEE
T ss_pred ----------------------------------------------CCCcccccCCCCcc--eEEeCCCCCCCCCCEEEe
Confidence 22678999999987 344556666667899999
Q ss_pred cCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCC
Q 042259 512 WPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGA 591 (745)
Q Consensus 512 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 591 (745)
.... ..|..++|||||||||||++|||+|++|+|++++||++|++||++++.....+............|||
T Consensus 248 ~~~~--------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~ 319 (471)
T 1p8j_A 248 DLRQ--------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGY 319 (471)
T ss_dssp ETTT--------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBT
T ss_pred eCCC--------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCCCCC
Confidence 7642 56899999999999999999999999999999999999999999876543333222212234568999
Q ss_pred CCCCccCCCCCCcc
Q 042259 592 GHVNPSKANDPGLV 605 (745)
Q Consensus 592 G~vn~~~A~~~~lv 605 (745)
|+||+.+|++....
T Consensus 320 G~vda~~Av~~a~~ 333 (471)
T 1p8j_A 320 GLLDAGAMVALAQN 333 (471)
T ss_dssp CBCCHHHHHHHHHT
T ss_pred EEEcHhHHHHHhhc
Confidence 99999999985433
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=420.36 Aligned_cols=281 Identities=17% Similarity=0.195 Sum_probs=214.3
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCC---CCCCCCCh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP---PIDNDGHG 208 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~---~~d~~gHG 208 (745)
...+|..+++|+||+|||||||||++||+|.++-. ..+.++|.++... ..|..|||
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~---------------------~~~~~d~~~~~~~~~p~~d~~gHG 101 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC---------------------AEGSWDFNDNTNLPKPRLSDDYHG 101 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC---------------------GGGCEETTTTBSCCCCCSTTTTHH
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc---------------------ccCcccCCCCCCCCCCCCCCCChH
Confidence 34589999999999999999999999999986411 0124556544322 25788999
Q ss_pred hhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC----C
Q 042259 209 THTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSL----P 284 (745)
Q Consensus 209 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~----~ 284 (745)
|||||||+|...++ .+ +.||||+|+|+.+|+++ .. +...++++||+|+++++ +|||||||.... .
T Consensus 102 T~vAGiiaa~~~n~-------~~-~~GvAp~a~i~~~rv~~-~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~~ 170 (503)
T 2id4_A 102 TRCAGEIAAKKGNN-------FC-GVGVGYNAKISGIRILS-GD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQ 170 (503)
T ss_dssp HHHHHHHHCCSSSS-------SS-CCCTTTTSEEEEEECTT-SC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCB
T ss_pred HHHHHHHHhccCCC-------CC-cEEECCCCEEEEEEeeC-CC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCcccc
Confidence 99999999975322 11 37999999999999997 33 57788999999999988 999999997631 1
Q ss_pred ChhhHHHHHHHHHh-----cCCcEEEEccCCCCCCCC--Ccc--cCCCceEEEeecccccceEEEEEeCCCeeeeeeecc
Q 042259 285 FFADAMATAAFTAS-----QKGILVSCSAGNSGPNSS--TLA--NEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIF 355 (745)
Q Consensus 285 ~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (745)
.....+..++.++. .+|+++|+||||+|.... .++ ..++++|+|||++
T Consensus 171 ~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~----------------------- 227 (503)
T 2id4_A 171 GPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID----------------------- 227 (503)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-----------------------
T ss_pred CchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC-----------------------
Confidence 12234444444554 489999999999997542 233 2567899999852
Q ss_pred CCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccccc
Q 042259 356 QPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVAD 435 (745)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 435 (745)
T Consensus 228 -------------------------------------------------------------------------------- 227 (503)
T 2id4_A 228 -------------------------------------------------------------------------------- 227 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEe----CCccEEec
Q 042259 436 NHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIG----PGVSILAA 511 (745)
Q Consensus 436 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~A----PG~~I~sa 511 (745)
..+.+++||++||.. |++| ||..|+++
T Consensus 228 -----------------------------------------~~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st 258 (503)
T 2id4_A 228 -----------------------------------------HKDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSS 258 (503)
T ss_dssp -----------------------------------------TTSCCCTTCCCCTTE--------EEEEECSBTTBCEEEE
T ss_pred -----------------------------------------CCCCcCCcCCCCCcc--------eEeecCCCCCCceEee
Confidence 122678999999987 8887 89999999
Q ss_pred cCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCC-CCcccCCCCCCCCCcccC
Q 042259 512 WPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLE-GKPIMNHHLLPADLFAVG 590 (745)
Q Consensus 512 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~-g~~~~~~~~~~~~~~~~G 590 (745)
.... ..|..++|||||||||||++|||+|++|+|++.+||++|++||+++... ...+............||
T Consensus 259 ~~~~--------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~~~~~~G 330 (503)
T 2id4_A 259 DING--------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYG 330 (503)
T ss_dssp CSTT--------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTB
T ss_pred cCCC--------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCccCcccC
Confidence 5431 6899999999999999999999999999999999999999999987643 111111111123456899
Q ss_pred CCCCCccCCCCCCc
Q 042259 591 AGHVNPSKANDPGL 604 (745)
Q Consensus 591 ~G~vn~~~A~~~~l 604 (745)
||+||+++|++...
T Consensus 331 ~G~vda~~Av~~a~ 344 (503)
T 2id4_A 331 FGKIDAHKLIEMSK 344 (503)
T ss_dssp TCBCCHHHHHHHHT
T ss_pred CcEecHHHHHHHHh
Confidence 99999999998543
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=408.15 Aligned_cols=267 Identities=22% Similarity=0.270 Sum_probs=200.2
Q ss_pred CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCC-CCC-----CCCCCCCCCh
Q 042259 135 FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKS-----EPPIDNDGHG 208 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~-~~~-----~~~~d~~gHG 208 (745)
.|..+++|+||+|+|||||||++||+|.++. ....+++. +.+ ..+.|..|||
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~----------------------~~~~~~~v~~~dg~~f~~~~~D~~GHG 75 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV----------------------MVTDFENVPEEDGTRFHRQASKCDSHG 75 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE----------------------EEEEEECCCCCC-------CTTTTHHH
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc----------------------cccCcccccCCCCccccCCCCCCCChH
Confidence 7888999999999999999999999998641 01111211 111 2356889999
Q ss_pred hhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhC------CCcEEEEccCCC
Q 042259 209 THTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEE------GVDVLSISLGSP 281 (745)
Q Consensus 209 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~------g~dVIn~S~G~~ 281 (745)
|||||||+|+. .||||+|+|+.+|+++ ..+ +..+++++||+|+++. +++|||||||+.
T Consensus 76 ThVAGIIag~~--------------~GVAP~A~L~~vkVl~-~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~ 140 (546)
T 2qtw_B 76 THLAGVVSGRD--------------AGVAKGASMRSLRVLN-CQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG 140 (546)
T ss_dssp HHHHHHHHCTT--------------TCSSTTCEEEEEECSC-TTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE
T ss_pred HHHHHHHhccC--------------CCcCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC
Confidence 99999999873 5999999999999998 555 7788999999999974 899999999975
Q ss_pred CCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCC-CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCC
Q 042259 282 SLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS-TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDF 360 (745)
Q Consensus 282 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (745)
. ...+..++.++.++|+++|+||||+|.+.. .+|+..+++|+|||++.+.
T Consensus 141 ~----s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g------------------------- 191 (546)
T 2qtw_B 141 Y----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQD------------------------- 191 (546)
T ss_dssp C----CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTS-------------------------
T ss_pred C----cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCC-------------------------
Confidence 3 345566666888999999999999998653 4578899999999963211
Q ss_pred CCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcccc
Q 042259 361 PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p 440 (745)
T Consensus 192 -------------------------------------------------------------------------------- 191 (546)
T 2qtw_B 192 -------------------------------------------------------------------------------- 191 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCcee----cccCCCCCCCCCCCccCceEeCCccEEeccCCCC
Q 042259 441 AVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVA----VFSSRGPNTASPGILKPDIIGPGVSILAAWPFSE 516 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a----~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~ 516 (745)
.++ .||++||. |||+|||++|+++++...
T Consensus 192 ---------------------------------------~~a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~~ 224 (546)
T 2qtw_B 192 ---------------------------------------QPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS 224 (546)
T ss_dssp ---------------------------------------CBCEETTEECCBSTT--------CCEEEECSSEEEECTTST
T ss_pred ---------------------------------------CcccccCCcCCCCCc--------ceEEecCccEEeeccCCC
Confidence 111 28999974 499999999999988633
Q ss_pred ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCccc------CCC---CCCCCCc
Q 042259 517 ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIM------NHH---LLPADLF 587 (745)
Q Consensus 517 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~------~~~---~~~~~~~ 587 (745)
..|..++|||||||||||++|||+|++|+|+++|||++|++||.+.......+. ..+ ..+....
T Consensus 225 -------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~ 297 (546)
T 2qtw_B 225 -------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTH 297 (546)
T ss_dssp -------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTC
T ss_pred -------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCccc
Confidence 578999999999999999999999999999999999999999976432211000 000 1122455
Q ss_pred ccCCCC--CCccCCCC
Q 042259 588 AVGAGH--VNPSKAND 601 (745)
Q Consensus 588 ~~G~G~--vn~~~A~~ 601 (745)
.+|+|+ .++..+..
T Consensus 298 ~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 298 GAGWQLFCRTVWSAHS 313 (546)
T ss_dssp C--CCCEEEEEECCCC
T ss_pred ccCCCcchhchhccCC
Confidence 678888 77777765
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=385.95 Aligned_cols=229 Identities=30% Similarity=0.407 Sum_probs=195.8
Q ss_pred CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAST 214 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGi 214 (745)
+|+.. +|+||+|+|||||||++||+|.++ +...++|..+ ..|..|||||||||
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~---~~d~~gHGT~vAgi 77 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR-----------------------AKQIKSYAST---ARDGHGHGTHCAGT 77 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEECSSS---SSCSSSHHHHHHHH
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc-----------------------cccccCCCCC---CCCCCCcHHHHHHH
Confidence 56665 999999999999999999999853 4455666643 33889999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCC-------CcEEEEccCCCCCCChh
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEG-------VDVLSISLGSPSLPFFA 287 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-------~dVIn~S~G~~~~~~~~ 287 (745)
|+|+. .||||+|+|+.+|+++....+...+++++++|+++++ ++|||||||... .
T Consensus 78 i~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~~----~ 139 (279)
T 3f7m_A 78 IGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGY----S 139 (279)
T ss_dssp HHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC----C
T ss_pred HhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcCc----c
Confidence 99862 6999999999999998333488899999999999876 899999999753 3
Q ss_pred hHHHHHHHHHhcCCcEEEEccCCCCCCCCC-cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCcee
Q 042259 288 DAMATAAFTASQKGILVSCSAGNSGPNSST-LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLP 366 (745)
Q Consensus 288 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (745)
+.+..++.++.++|+++|+||||+|..... +++..+++|+|||++
T Consensus 140 ~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~---------------------------------- 185 (279)
T 3f7m_A 140 AALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD---------------------------------- 185 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC----------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC----------------------------------
Confidence 556666668889999999999999987544 378889999999952
Q ss_pred eEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEch
Q 042259 367 LVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSY 446 (745)
Q Consensus 367 ~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 446 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccce
Q 042259 447 AAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTF 526 (745)
Q Consensus 447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y 526 (745)
..+.+++||++||.. ||+|||++|+++++. +.|
T Consensus 186 ------------------------------~~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~---------~~~ 218 (279)
T 3f7m_A 186 ------------------------------SNDVRSTFSNYGRVV--------DIFAPGTSITSTWIG---------GRT 218 (279)
T ss_dssp ------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECGG---------GCE
T ss_pred ------------------------------CCCCCCCCCCCCCCC--------eEEECCCCeEeecCC---------CCE
Confidence 113678999999966 999999999999987 779
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhccccccc
Q 042259 527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVN 570 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 570 (745)
..++|||||||+|||++|||+|++|+ ++++||++|++||++..
T Consensus 219 ~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 219 NTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 99999999999999999999999999 99999999999998753
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=411.33 Aligned_cols=311 Identities=21% Similarity=0.220 Sum_probs=200.2
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCC---CCCCCCCCh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSE---PPIDNDGHG 208 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~---~~~d~~gHG 208 (745)
...+|..+++|+||+|||||||||++||||.++- ..+.++|..+.. +..|+++||
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~----------------------~~~~~~~~~~~~dp~p~~~~~gHG 116 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV----------------------RPGSKNVVTGSDDPTPTDPDTAHG 116 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB----------------------CSCCBCTTTSSSCCCCCSTTCCHH
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc----------------------ccCcceeecCCCCCCCCCCCCChH
Confidence 3458999999999999999999999999998641 112334443322 234578999
Q ss_pred hhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHH-HHHHhCCCcEEEEccCCCC-C---
Q 042259 209 THTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAI-DAAVEEGVDVLSISLGSPS-L--- 283 (745)
Q Consensus 209 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai-~~a~~~g~dVIn~S~G~~~-~--- 283 (745)
|||||||||.. +..| +.||||+|+|+.+|+++....+..++++.++ +++..++++|||+|||... .
T Consensus 117 ThVAGiIAa~~--------n~~g-~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~~~ 187 (600)
T 3hjr_A 117 TSVSGIIAAVD--------NAIG-TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDPRS 187 (600)
T ss_dssp HHHHHHHHCCS--------SSSS-CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSCCC
T ss_pred HHHHHHHhEeC--------CCCC-cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCCcc
Confidence 99999999862 1222 3799999999999999833347777877776 6677889999999999753 1
Q ss_pred --CChhhHHHHHHHH--HhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCC
Q 042259 284 --PFFADAMATAAFT--ASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKD 359 (745)
Q Consensus 284 --~~~~~~~~~a~~~--a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (745)
......+..++.. ...+|+++|+||||.+....... +.+.+. +++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~~------------g~~~------------ 237 (600)
T 3hjr_A 188 ANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNRT------------GNGP------------ 237 (600)
T ss_dssp SCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEEE------------SSCC------------
T ss_pred CCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------cccccC------------CCCC------------
Confidence 1112222222222 23689999999999764311000 000000 0000
Q ss_pred CCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccc
Q 042259 360 FPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVL 439 (745)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 439 (745)
....+.|.... +......|.|.
T Consensus 238 --------------~~~~~~~~~d~--~~~~~~~IsVg------------------------------------------ 259 (600)
T 3hjr_A 238 --------------KLPFENSNLDP--SNSNFWNLVVS------------------------------------------ 259 (600)
T ss_dssp --------------CCCSSBTTSSG--GGGSSSEEEEE------------------------------------------
T ss_pred --------------CCCcccccccC--ccccCcceEEe------------------------------------------
Confidence 00000010000 00000111111
Q ss_pred cEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccE--------Eec
Q 042259 440 PAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSI--------LAA 511 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I--------~sa 511 (745)
.....+.++.||++|+.. +++|||..+ .+.
T Consensus 260 ----------------------------------A~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~ 297 (600)
T 3hjr_A 260 ----------------------------------ALNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTD 297 (600)
T ss_dssp ----------------------------------EECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEEC
T ss_pred ----------------------------------eecCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeec
Confidence 023345788999999987 899998763 222
Q ss_pred cCCCC-----------------ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCC
Q 042259 512 WPFSE-----------------ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGK 574 (745)
Q Consensus 512 ~~~~~-----------------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~ 574 (745)
.++.. .........|..++|||||||||||++|||+|++|+|+++|||++|++||++++....
T Consensus 298 ~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~ 377 (600)
T 3hjr_A 298 LPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQ 377 (600)
T ss_dssp CSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCC
T ss_pred CCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC
Confidence 22211 0011223568899999999999999999999999999999999999999999987665
Q ss_pred ccc--------------------CCC-CCCCCCcccCCCCCCccCCCCCCc
Q 042259 575 PIM--------------------NHH-LLPADLFAVGAGHVNPSKANDPGL 604 (745)
Q Consensus 575 ~~~--------------------~~~-~~~~~~~~~G~G~vn~~~A~~~~l 604 (745)
|+. .+. |.. ....||||+||+.+|++.+.
T Consensus 378 p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~-~s~~yGfG~vDA~~aV~~A~ 427 (600)
T 3hjr_A 378 PVMVSYTSSTGKVRDVKGLEGWERNAAGMW-FSPTYGFGLIDVNKALELAA 427 (600)
T ss_dssp CEEEEEECTTSCEEEEEEECCSEECTTSCE-EBTTTBTCBCCHHHHHHHHT
T ss_pred cccccccccccccccccccCCcccccCCce-EccccCCceecHHHHHHHhh
Confidence 421 111 222 34579999999999987443
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-25 Score=249.80 Aligned_cols=96 Identities=29% Similarity=0.431 Sum_probs=78.4
Q ss_pred eeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh---CCCcEEEEccCCCCCC---ChhhHHHHHHHHHhcCCcEEEE
Q 042259 233 AAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE---EGVDVLSISLGSPSLP---FFADAMATAAFTASQKGILVSC 306 (745)
Q Consensus 233 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~---~g~dVIn~S~G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 306 (745)
+.||||+|+|+.|++.+ ...+++++|+||++ ++++|||||||..... .+.+.+..++.+|..+||+||+
T Consensus 274 ~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~ 348 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA 348 (552)
T ss_dssp HHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 47999999999999754 45789999999998 7899999999986422 2344566666788899999999
Q ss_pred ccCCCCCCC--------CCcccCCCceEEEeeccc
Q 042259 307 SAGNSGPNS--------STLANEAPWMLTVGASTI 333 (745)
Q Consensus 307 AAGN~g~~~--------~~~~~~~p~vitVga~~~ 333 (745)
||||+|... ..+++.+|++++||+++.
T Consensus 349 AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 349 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred ecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 999999653 356688999999999754
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-22 Score=212.12 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=80.5
Q ss_pred eeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCC----CChhhHHHHHHHHHhcCCcEEEEcc
Q 042259 234 AGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSL----PFFADAMATAAFTASQKGILVSCSA 308 (745)
Q Consensus 234 ~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AA 308 (745)
..+||+++++.|++.+ ..++..++++++|+||++ ++++|||||||.... ..+.+.+..++.++..+||+||+||
T Consensus 90 g~~aP~a~~~~~~~~~-~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As 168 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMAD-QSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSS 168 (372)
T ss_dssp HHTTSCEEEEEEEEEC-TTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCCcEEEEEeCC-CCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 3578999999999987 545677899999999998 899999999997631 1234567777778889999999999
Q ss_pred CCCCCCCC-------------CcccCCCceEEEeeccc
Q 042259 309 GNSGPNSS-------------TLANEAPWMLTVGASTI 333 (745)
Q Consensus 309 GN~g~~~~-------------~~~~~~p~vitVga~~~ 333 (745)
||+|...+ .+++.+|++++||+++.
T Consensus 169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 99997642 45678999999999754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=127.91 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=63.0
Q ss_pred eeccCceEEeeecccCCCCCCHHHHHHHHHHHH--hCCCcEEEEccCCCCC---CChhhHHHHHHHHHhcCCcEEEEccC
Q 042259 235 GMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV--EEGVDVLSISLGSPSL---PFFADAMATAAFTASQKGILVSCSAG 309 (745)
Q Consensus 235 GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~--~~g~dVIn~S~G~~~~---~~~~~~~~~a~~~a~~~Gi~vV~AAG 309 (745)
+++++..++.|.... . ......++..+++.. .+-++||++|||.... ..+.+.+...+.++..+||.|++|+|
T Consensus 263 a~~~~i~~~~~~~~g-~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG 340 (544)
T 3edy_A 263 SAGANISTWVYSSPG-R-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG 340 (544)
T ss_dssp HHSTTSEEEEECCCS-C-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred ccCCCceEEEEecCC-c-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 444555555554322 1 112233444444433 2458999999998742 23344556666678899999999999
Q ss_pred CCCCCC----------CCcccCCCceEEEeeccc
Q 042259 310 NSGPNS----------STLANEAPWMLTVGASTI 333 (745)
Q Consensus 310 N~g~~~----------~~~~~~~p~vitVga~~~ 333 (745)
|+|... ..+++.+|||++||+++.
T Consensus 341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999742 246688999999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=100.97 Aligned_cols=80 Identities=6% Similarity=0.073 Sum_probs=68.0
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeE
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFI 108 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~ 108 (745)
...+++|||+|++...... ...|.+|+.+++.+. ..+.++.|+|++.|+||+++|+++++++|+++|+|.
T Consensus 34 ~~ip~~YIV~lk~~~~~~~---~~~h~~~l~s~~~~~-------~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~ 103 (114)
T 2w2n_P 34 WRLPGTYVVVLKEETHLSQ---SERTARRLQAQAARR-------GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVD 103 (114)
T ss_dssp GEEEEEEEEEECTTCCHHH---HHHHHHHHHHHHHHT-------TCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEE
T ss_pred cCCCCcEEEEECCCCCHHH---HHHHHHHHHHHhhhc-------ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCcc
Confidence 4578999999998875433 567888999887653 356799999999999999999999999999999999
Q ss_pred EEEEccccCC
Q 042259 109 SARVENILEP 118 (745)
Q Consensus 109 ~v~~~~~~~~ 118 (745)
+||+++.++.
T Consensus 104 ~VE~D~~v~~ 113 (114)
T 2w2n_P 104 YIEEDSSVFA 113 (114)
T ss_dssp EEEEEEEEEE
T ss_pred EEEeCceEec
Confidence 9999987753
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=89.21 Aligned_cols=75 Identities=11% Similarity=0.248 Sum_probs=57.7
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeE
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFI 108 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~ 108 (745)
...+++|||.||++..... . ..++++. .+.++.++|++ |+||+++++++++++|+++|+|.
T Consensus 5 ~~i~~~YIV~~k~~~~~~~------~---~~~~~~~---------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~ 65 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGFKSCA------K---KEDVISE---------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVA 65 (80)
T ss_dssp ---CCEEEEEECTTCCSHH------H---HHHHHHT---------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEE
T ss_pred ccCCCCEEEEECCCCChHH------H---HHHHHHH---------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCcc
Confidence 3468999999998875321 1 1222222 35689999998 99999999999999999999999
Q ss_pred EEEEccccCCCCCC
Q 042259 109 SARVENILEPQTTH 122 (745)
Q Consensus 109 ~v~~~~~~~~~~~~ 122 (745)
+||+++.++++++.
T Consensus 66 ~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 66 YVEEDKLYRALSAT 79 (80)
T ss_dssp EEEECCEEEECCC-
T ss_pred EEEeCcEEEEeeec
Confidence 99999999887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-09 Score=95.17 Aligned_cols=80 Identities=6% Similarity=0.073 Sum_probs=63.1
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeE
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFI 108 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~ 108 (745)
...+++|||+||++..... ...+.+++.+++++. ..+.++.|+|++.|+||+++++++++++|+++|+|.
T Consensus 44 ~~Ip~~YIV~~K~~~~~~~---~~~~~~~l~~~~~~r-------~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~ 113 (124)
T 2qtw_A 44 WRLPGTYVVVLKEETHLSQ---SERTARRLQAQAARR-------GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVD 113 (124)
T ss_dssp GEEEEEEEEEECTTCCHHH---HHHHHHHHHHHHHHT-------TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEE
T ss_pred cCCCCCEEEEECCCCCHHH---HHHHHHHHHHHHhhc-------ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCc
Confidence 4578999999999876333 344445555443332 246789999999999999999999999999999999
Q ss_pred EEEEccccCC
Q 042259 109 SARVENILEP 118 (745)
Q Consensus 109 ~v~~~~~~~~ 118 (745)
+|++++.++.
T Consensus 114 ~VE~D~~v~a 123 (124)
T 2qtw_A 114 YIEEDSSVFA 123 (124)
T ss_dssp EEEEEEEEEE
T ss_pred EEEeCceEec
Confidence 9999987753
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=90.54 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=74.4
Q ss_pred CCCccCCCCCCCCc-------ccceEEEEeeCCC-cchhhhhhhHhhcCceEEEEecCCCCCcc--cc--ccCccccEEE
Q 042259 376 SAAFCLPETLKSID-------VKGKVVLCQRGGG-TQRIRKGKDVKDAGGAAMILMNDELFDYG--TV--ADNHVLPAVY 443 (745)
Q Consensus 376 ~~~~c~~~~~~~~~-------~~g~ivl~~~~g~-~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~~~p~~~ 443 (745)
...+|.+....... .++||+|+ +||. |.|.+|..+++++||.++|+||+...+.. .. .....||+++
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV-~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~ 160 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALI-QRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIM 160 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEE-ESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEE-ECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEE
Confidence 46789877653322 47899999 9999 99999999999999999999998533221 11 2235799999
Q ss_pred EchHhHHHHHHHHhcCCCCeEEEEecc
Q 042259 444 VSYAAGERIKAYINSTSSPTASIVFKG 470 (745)
Q Consensus 444 i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
|+..+|+.|++.+..+...+++|++..
T Consensus 161 Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 161 IGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp ECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 999999999999999887777776654
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-08 Score=80.20 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=55.0
Q ss_pred ceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEec-ceeeEEEEEeCHHHHHHhhcC--CCeEE
Q 042259 33 QTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYR-NVISGFAARLTAEEVKAMETK--SGFIS 109 (745)
Q Consensus 33 ~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~-~~~~g~s~~l~~~~~~~L~~~--p~V~~ 109 (745)
+.|||.||++..... ...+.+++.+ .+.++.+.|+ ..|+||+++++++.+++|+++ |.|.+
T Consensus 3 ~sYIV~lk~~~~~~~---~~~~~~~~~~-------------~gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~ 66 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDK---IRETKDEVIA-------------EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (76)
T ss_dssp EEEEEEECTTCCHHH---HHHHHHHHHH-------------HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred ceEEEEECCCCCHHH---HHHHHHHHHh-------------hCCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcE
Confidence 789999998875333 3334444332 2457889994 799999999999999999999 89999
Q ss_pred EEEccccCC
Q 042259 110 ARVENILEP 118 (745)
Q Consensus 110 v~~~~~~~~ 118 (745)
||+++.++.
T Consensus 67 VE~D~~v~~ 75 (76)
T 1v5i_B 67 IEEDHVAHA 75 (76)
T ss_dssp EEECCEEEC
T ss_pred EcCCcEEeC
Confidence 999987753
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.59 E-value=8.1e-05 Score=58.43 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=40.3
Q ss_pred ccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEccccC
Q 042259 73 HHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVENILE 117 (745)
Q Consensus 73 ~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 117 (745)
..+.++.++|. .+++++++|+++.++.|+++|+|++||+|...+
T Consensus 20 ~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 20 GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 45889999997 899999999999999999999999999998664
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.016 Score=51.54 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=56.9
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEE-cCceEEE
Q 042259 659 SSPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV-SATHTVR 737 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~-~~~~~v~ 737 (745)
+...+.+++|+|.|+.+..|++....| .+++|....+.+ |+++.++|+|.+... ..+.+.|.+. ++...+.
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L~p-g~~~~i~V~F~P~~~---g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTLNV-GESMQLEVEFEPQSV---GDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEECT-TCEEEEEEEECCSSS---BCCCCBCEEEESSSCEEC
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEECC-CCEEEEEEEEEcCCC---ccEEEEEEEEECCCCEEE
Confidence 347888899999999988888775432 567899999988 999999999999864 4566777766 5555555
Q ss_pred eeE
Q 042259 738 SPI 740 (745)
Q Consensus 738 ~P~ 740 (745)
+++
T Consensus 112 v~L 114 (122)
T 2ys4_A 112 VSL 114 (122)
T ss_dssp CEE
T ss_pred EEE
Confidence 543
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.024 Score=61.94 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=58.7
Q ss_pred CCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc-cc--ccCccccEEEEchHhHHHHHHHHh
Q 042259 385 LKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG-TV--ADNHVLPAVYVSYAAGERIKAYIN 457 (745)
Q Consensus 385 ~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~--~~~~~~p~~~i~~~~g~~l~~~~~ 457 (745)
+...+++|||+|+ .||.|.|.+|..+++++||.|+|++++...... .. .....+|.+.++..+++.|+.++.
T Consensus 108 ~~~~dv~GkIvlv-~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALI-QRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEE-ECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEE-eCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 3345899999999 999999999999999999999999998532111 11 134678999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.056 Score=59.36 Aligned_cols=102 Identities=10% Similarity=0.053 Sum_probs=69.7
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcc---------hhhh----hhhHhhcCceEEEEecCCCC
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQ---------RIRK----GKDVKDAGGAAMILMNDELF 428 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~---------~~~~----~~~~~~~Ga~g~i~~n~~~~ 428 (745)
+..-++++..+. ..|.. ..+.+++|||||+ .|+.|. +..| ..++.++||+|+|++++...
T Consensus 105 ~vta~lV~v~~~----~~~~~--~~~~dvkGKIVlv-~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~ 177 (444)
T 3iib_A 105 GLSATIVRFDTL----QDLQN--AEAGSLNDKIAFI-DAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTD 177 (444)
T ss_dssp CEEEEEEEESSH----HHHHT--SCTTTTTTCEEEE-CCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSC
T ss_pred CeEEEEEecCCH----HHHhh--ccccccCccEEEE-eCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCc
Confidence 345677776421 22322 2356899999999 998874 3344 35689999999999987432
Q ss_pred Cc-------cc-cccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecc
Q 042259 429 DY-------GT-VADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKG 470 (745)
Q Consensus 429 ~~-------~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
.. .. ......+|++.|+..+++.|+..+..+...++++....
T Consensus 178 ~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 178 HDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp CSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred ccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 21 11 11245799999999999999999987766666665443
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.031 Score=63.95 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=55.4
Q ss_pred CcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-c-----------------ccc----------------
Q 042259 388 IDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-Y-----------------GTV---------------- 433 (745)
Q Consensus 388 ~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~-----------------~~~---------------- 433 (745)
.+++|||||+ .+|.|.+.+|..++.++||.|+|++++.... . ...
T Consensus 128 vdv~GkIvlv-~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~ 206 (640)
T 3kas_A 128 TPVNGSIVIV-RAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 206 (640)
T ss_dssp SCCTTSEEEE-ESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSS
T ss_pred cccCCcEEEE-ecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCcccccccccccccc
Confidence 4799999999 9999999999999999999999999875321 0 000
Q ss_pred ccCccccEEEEchHhHHHHHHHHh
Q 042259 434 ADNHVLPAVYVSYAAGERIKAYIN 457 (745)
Q Consensus 434 ~~~~~~p~~~i~~~~g~~l~~~~~ 457 (745)
.....||+..|+..++..|+..+.
T Consensus 207 ~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 207 SGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cCCCCCCEEecCHHHHHHHHHHcc
Confidence 012368999999999999988764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.53 E-value=0.044 Score=63.38 Aligned_cols=71 Identities=27% Similarity=0.350 Sum_probs=56.8
Q ss_pred CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC----C------------------cc----cccc-----
Q 042259 387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF----D------------------YG----TVAD----- 435 (745)
Q Consensus 387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~----~------------------~~----~~~~----- 435 (745)
..+++|||+|+ ++|.|.+.+|..++.++||+|+|+|++... + .. ..++
T Consensus 150 ~~~v~GkIvlv-~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG 228 (707)
T 3fed_A 150 GINCTGKIVIA-RYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPG 228 (707)
T ss_dssp CCCCTTCEEEE-ECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTT
T ss_pred CCCCCCeEEEE-ECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCC
Confidence 45799999999 999999999999999999999999986320 0 00 0011
Q ss_pred -----------------CccccEEEEchHhHHHHHHHHhc
Q 042259 436 -----------------NHVLPAVYVSYAAGERIKAYINS 458 (745)
Q Consensus 436 -----------------~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
...||++.|+..++..|+..+..
T Consensus 229 ~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 229 YPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp SCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 24789999999999999998764
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.74 E-value=2 Score=38.75 Aligned_cols=83 Identities=12% Similarity=0.078 Sum_probs=62.5
Q ss_pred cEEEEEEEEecCCCCeeEEEEEECC----CCeEEEEEcCeEEEeeCCceEEEEEEEEeccC------CCCCeEEEEEEEE
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHIIVP----EGVKIIVQPDKISFTEKNQKATFSVTFIRDQN------SNASSVQGYLSWV 730 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~------~~~~~~~G~~~~~ 730 (745)
..+-+++|+|.|.-+.+|++..... ..--++++|..-++.| |++.+++|++..+.. .....++--|++.
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~P-ge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~ 122 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 122 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCC-CCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence 5677899999999999999974321 1123667899999988 999999999997442 1113456678887
Q ss_pred -cCceEEEeeEEEEe
Q 042259 731 -SATHTVRSPIAIGF 744 (745)
Q Consensus 731 -~~~~~v~~P~~~~~ 744 (745)
.++....+|+-..|
T Consensus 123 Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 123 LDRGKDYFLTISGNY 137 (140)
T ss_dssp ETTSCEEEEEEEEEE
T ss_pred eecCCcEEEEEeccc
Confidence 78888999987765
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.87 Score=39.12 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=50.4
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEEC-CCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEE
Q 042259 659 SSPQTYNRTVTNVGQDNSFYTHHIIV-PEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
+...+.+++++|.|+.+..|++.... +.+...+++|..-.+.+ |++++++|+|.+... ..+.=.|++.
T Consensus 25 g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~p-g~~~~i~V~f~~~~~---g~f~~~i~v~ 93 (112)
T 2e6j_A 25 GSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEP-SGVQAIQISFSSIIL---GNFEEEFLVN 93 (112)
T ss_dssp SCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECT-TBCCEEEEEECCCCC---EEEEEEECEE
T ss_pred CCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECC-CCEEEEEEEEECCCc---ceEEEEEEEE
Confidence 34688889999999999999883211 11234677899999988 999999999999753 2344556666
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.40 E-value=0.26 Score=60.15 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCC
Q 042259 138 DSNLGKGVIIGVLDMGITPGHPSFS 162 (745)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~ 162 (745)
..+.|+||+|||+|||||+.+|.|.
T Consensus 31 P~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 31 PEYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TTCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCCccEEEEEeCCCCCCCCcce
Confidence 3578999999999999999999997
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=86.85 E-value=2.6 Score=36.70 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=45.4
Q ss_pred cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccC
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQN 717 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 717 (745)
...+++.|.|....+.+|.+++....++.+. .+..+.+++ |+..++.|.+..+..
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~-g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEP-GEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECT-TCEEEEEEEEEECGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECC-CCEEEEEEEEEEChH
Confidence 5788899999999999999999987776543 355688877 999999999988764
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=0.43 Score=52.21 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=26.8
Q ss_pred CCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCC
Q 042259 476 KSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPF 514 (745)
Q Consensus 476 ~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~ 514 (745)
...+.++.||++||.. ||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 4456899999999866 999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 745 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 3e-48 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 7e-14 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-13 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 5e-13 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 7e-04 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-12 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 3e-10 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 7e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 5e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 9e-11 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 1e-11 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 1e-05 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 7e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 6e-10 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 5e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 2e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 4e-07 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 0.003 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 4e-07 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 5e-05 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 174 bits (440), Expect = 3e-48
Identities = 83/484 (17%), Positives = 142/484 (29%), Gaps = 83/484 (17%)
Query: 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGA 191
+ DS I ++D G H N +
Sbjct: 12 GATVLSDSQ-AGNRTICIIDSGYDRSHNDL-----------------------NANNVTG 47
Query: 192 RNFLNKSEP--PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
N P +N+ HGTH A T A N G+ P + I+ V
Sbjct: 48 TNNSGTGNWYQPGNNNAHGTHVAGTIAAI---------ANNEGVVGVMPNQNANIHIVKV 98
Query: 250 TDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAG 309
+ + ++ S A T G+L+ +AG
Sbjct: 99 FNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGVLLIAAAG 158
Query: 310 NSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVY 369
N+G +S + +++V A + A +Q +Q +
Sbjct: 159 NAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEIS------------GPGEAIL 206
Query: 370 PGVKNSSAAFCLPETLKSIDVKGKVVLCQRG--GGTQRIRKGKDVKDAGGAAMILMNDEL 427
V VV R GT + G A +N
Sbjct: 207 STVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTS 266
Query: 428 FDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSR 487
F G +A+ + + + S I + + +S
Sbjct: 267 FSCGNMANKI-------------CLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSA 313
Query: 488 GPNTASPGIL--KPDIIGPGVSILAAWPFSEENI--------TNTKSTFTMISGTSMSCP 537
P +P ++ DI P VS+ A + + + +GTSM+ P
Sbjct: 314 LPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATP 373
Query: 538 HLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPS 597
H+SG+A L+ S HP+ S + +++A+ TAD +++ G+ G G +N
Sbjct: 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRD-----------NQTGYGMINAV 422
Query: 598 KAND 601
A
Sbjct: 423 AAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 72.8 bits (177), Expect = 7e-14
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 499 PDIIGPGVSILAAWP---------FSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA 549
+ PGV+IL+ P +E T+ GTSM+ PH++G+ A+L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 550 HPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
P+ P I+ + TA N G G G V A
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNGWD-----------HDTGYGLVKLDAA 436
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 59.3 bits (142), Expect = 1e-09
Identities = 35/217 (16%), Positives = 60/217 (27%), Gaps = 35/217 (16%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
+ G +I+ V+D G+ HP +LEG L
Sbjct: 147 LWEEASGTNIIVAVVDTGVDGTHP------------------DLEGQVIAGYRPAFDEEL 188
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
GTH A T A G+AP A + + +
Sbjct: 189 PAGTDSSYGGSAGTHVAGTIAAKK---------DGKGIVGVAPGAKIMPIVIFDDPALVG 239
Query: 256 ------ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAG 309
+ V A I A + G V++ S G + A ++V +
Sbjct: 240 GNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAM--EHGVVMVVSAGN 297
Query: 310 NSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQ 346
N+ + P ++ V A + ++
Sbjct: 298 NTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSR 334
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 69.2 bits (168), Expect = 2e-13
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 34/197 (17%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W + G I V+D G+ HP + K+I +F+
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDL-----------------------DGKVIKGYDFV 60
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
+ P+D + HGTH A AA N AGMAP + + + +
Sbjct: 61 DNDYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGT 112
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
S + AI A + G +V+++ S + A A KG +V +AGN+G ++
Sbjct: 113 LSDIADAIIYAADSGAEVINL---SLGCDCHTTTLENAVNYAWNKGSVVVAAAGNNGSST 169
Query: 316 STLANEAPWMLTVGAST 332
+ ++ VGA
Sbjct: 170 TFEPASYENVIAVGAVD 186
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 503 GPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAI 562
G V ++A IT + + +SGTSM+ PH++G+AALL S + I+ AI
Sbjct: 198 GTWVDVVAPGVDIVSTITGNR--YAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAI 253
Query: 563 MTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
TAD ++ G G +N A
Sbjct: 254 EQTADKISGTGTY-------------FKYGRINSYNA 277
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 68.4 bits (165), Expect = 5e-13
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 498 KPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAA 557
+I PG S+ + W + ISGTSM+ PH+SG+AA + + +P S
Sbjct: 224 DIEISAPGSSVYSTWY---------NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQ 274
Query: 558 IKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVN 595
++S + A V+++G + D +A G G
Sbjct: 275 LRSNLQERAKSVDIKG----GYGAAIGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 40.2 bits (92), Expect = 7e-04
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSD 163
+ G G+ I VLD G+ HP +
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 66.5 bits (161), Expect = 1e-12
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 31/129 (24%)
Query: 471 TVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530
V S A FSS G + +++ PG + + +P + T+ ++
Sbjct: 175 AVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTN---------TYATLN 217
Query: 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVG 590
GTSM+ PH++G AAL+ S HP+ S + +++ + +TA + F G
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYG 263
Query: 591 AGHVNPSKA 599
G +N A
Sbjct: 264 KGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 59.6 bits (143), Expect = 3e-10
Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 41/215 (19%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
G V + VLD GI HP ++G +F+
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDL-------------------------NVVGGASFV 51
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
D +GHGTH A T A L + L KV +
Sbjct: 52 AGEAYNTDGNGHGTHVAGTVAALDNTTGVLGVAPS---------VSLYAVKVLNSSGSGS 102
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSG--- 312
S + + I+ A G+DV+++SLG S A+ +G++V +AGNSG
Sbjct: 103 YSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAY---ARGVVVVAAAGNSGNSG 159
Query: 313 -PNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQ 346
N+ + ++ VGA + + + + +G +
Sbjct: 160 STNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 65.7 bits (159), Expect = 2e-12
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 503 GPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAI 562
G G+ I+A P T ST+ ++GTSM+ PH++G AAL+K +P WS I++ +
Sbjct: 187 GAGLDIVA--PGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 563 MTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
TA + +L+ G+G VN A
Sbjct: 245 KNTATSLG------------STNLY--GSGLVNAEAA 267
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 64.2 bits (155), Expect = 7e-12
Identities = 51/210 (24%), Positives = 79/210 (37%), Gaps = 38/210 (18%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
G GV + VLD GI+ HP I G +F+
Sbjct: 17 HNRGLTGSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFV 50
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
D +GHGTH G + G+AP A L KV
Sbjct: 51 PGEPSTQDGNGHGTHV---------AGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGS 101
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
S + ++ A G+ V ++SLGSP + + A +A+ +G+LV ++GNSG S
Sbjct: 102 VSSIAQGLEWAGNNGMHVANLSLGSP---SPSATLEQAVNSATSRGVLVVAASGNSGAGS 158
Query: 316 STLANEAPWMLTVGASTIDRSIVALTQLGN 345
+ + VGA+ + + + +Q G
Sbjct: 159 ISYPARYANAMAVGATDQNNNRASFSQYGA 188
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 64.9 bits (157), Expect = 5e-12
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 448 AGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVS 507
AG + +ST V S+ + A FSS GP + D++ PGVS
Sbjct: 153 AGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVS 204
Query: 508 ILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567
I + P + + +GTSM+ PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 205 IQSTLP---------GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Query: 568 IVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
+ D F G G +N A
Sbjct: 256 KLG--------------DSFYYGKGLINVQAA 273
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 61.1 bits (147), Expect = 9e-11
Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 34/212 (16%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
G V + V+D GI HP K+ G + +
Sbjct: 17 HSQGYTGSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASMV 51
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
P ++ G V G + G+AP A L KV D
Sbjct: 52 PSETNPFQDNNSH--------GTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQ 103
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
S + I+ A+ +DV+++SLG PS A A + + + + G SG +S
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSS 163
Query: 316 S-TLANEAPWMLTVGASTIDRSIVALTQLGNQ 346
+ + P ++ VGA + + +G +
Sbjct: 164 TVGYPGKYPSVIAVGAVDSSNQRASFSSVGPE 195
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.4 bits (155), Expect = 1e-11
Identities = 14/74 (18%), Positives = 30/74 (40%)
Query: 526 FTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPAD 585
+GTS S P +GI AL A+ + + ++ ++ T+ +L + +
Sbjct: 253 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 312
Query: 586 LFAVGAGHVNPSKA 599
+ G G ++
Sbjct: 313 SHSYGYGLLDAGAM 326
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 17/182 (9%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W G G+++ +LD GI HP + P + +
Sbjct: 30 WAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP---------------GASFDVNDQDPDP 74
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
++++ HGT A A NG G A G + + E
Sbjct: 75 QPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLDGEVTDAVEARSLGL 134
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
N + G + ++ P+ + G + ++GN G
Sbjct: 135 NP--NHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREH 192
Query: 316 ST 317
+
Sbjct: 193 DS 194
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 61.8 bits (148), Expect = 7e-11
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 493 SPGILKPDIIGPGVSILAAWPFSEEN---ITNTKSTFTMISGTSMSCPHLSGIAALLKSA 549
G +KPD++ PG IL+A + N S + + GTSM+ P ++G A L+
Sbjct: 212 KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREH 271
Query: 550 HPD-----WSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
P+ +K+A++ A + L G G V K+
Sbjct: 272 FVKNRGITPKPSLLKAALIAGAADIGLGYPN-----------GNQGWGRVTLDKS 315
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 35/184 (19%), Positives = 55/184 (29%), Gaps = 27/184 (14%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G+G I+ V D G+ G S KI ++
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSM-----------------HEAFRGKITALYAL-GRTNNA 62
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A + GN G A + + LG S +
Sbjct: 63 NDTNGHGTHVAGSVLGNGSTN-------KGMAPQANLVFQSIMD--SGGGLGGLPSNLQT 113
Query: 262 AIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANE 321
A G + + S G+ + + + + +AGN GPN T++
Sbjct: 114 LFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAP 173
Query: 322 APWM 325
Sbjct: 174 GTAK 177
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 58.6 bits (140), Expect = 6e-10
Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 35/226 (15%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W + G G I ++D G+ HP + K++G +F+
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFV 59
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
+ P + +GHGTH A AA N AG AP A + +V +
Sbjct: 60 DNDSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGT 111
Query: 256 ESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNS 315
+ V I A ++G V+S+SLG A+ + +AGN+G +
Sbjct: 112 WTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWNKGSVVV---AAAGNAGNTA 168
Query: 316 STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFP 361
+ V ++ + + + + G+ +P
Sbjct: 169 PNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAPGSSIYSTYP 214
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 49.7 bits (117), Expect = 5e-07
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 17/97 (17%)
Query: 503 GPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAI 562
G V + A T ST+ +SGTSM+ PH++G+A LL S S + I++AI
Sbjct: 197 GSWVDVAAPGSS--IYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAI 252
Query: 563 MTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
TAD ++ G G VN KA
Sbjct: 253 ENTADKISGTGT-------------YWAKGRVNAYKA 276
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 524 STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLP 583
GTS + P +G+ LL A+P+ + ++ + +A + +
Sbjct: 255 RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMG 314
Query: 584 ADL-FAVGAGHVNPSKA 599
G G ++ K
Sbjct: 315 KKYSHRYGFGKIDAHKL 331
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 4e-07
Identities = 27/198 (13%), Positives = 52/198 (26%), Gaps = 36/198 (18%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W ++ G GV+ ++D G+ + D N G+ +F
Sbjct: 39 WYNNITGAGVVAAIVDDGLDYENEDLKD---------------------NFCAEGSWDFN 77
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCP 255
+ + P H A N F + A ++ ++ D
Sbjct: 78 DNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVG-----VGYNAKISGIRILSGD--IT 130
Query: 256 ESIVNAAIDAAVE--------EGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCS 307
A++ ++ G L PS + KG + +
Sbjct: 131 TEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFA 190
Query: 308 AGNSGPNSSTLANEAPWM 325
+GN G +
Sbjct: 191 SGNGGTRGDNCNYDGYTN 208
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKP 575
+ ISGTSM+ PH++G+AA L + + +A + I TA+ +L P
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIP 265
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 37.8 bits (86), Expect = 0.003
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSD 163
S ++ D + G+G + V+D GI HP F
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHPEFEG 51
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 50.5 bits (119), Expect = 4e-07
Identities = 32/176 (18%), Positives = 50/176 (28%), Gaps = 33/176 (18%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G+G I ++ +G S + +
Sbjct: 23 GQGQCIAIIALGGGYDETSLAQ------------------------YFASLGVSAPQVVS 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
+ DG G A +AP A +A+Y TD G +
Sbjct: 59 VSVDGATNQPTGDPNGPDGEVEL----DIEVAGALAPGAKIAVYFAPNTDAGFLNA--IT 112
Query: 262 AIDAAVEEGVDVLSISLGSPSLPF---FADAMATAAFTASQKGILVSCSAGNSGPN 314
++SIS G P + AM A A+ G+ V +AG+SG
Sbjct: 113 TAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGST 168
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 43.8 bits (102), Expect = 5e-05
Identities = 23/186 (12%), Positives = 46/186 (24%), Gaps = 43/186 (23%)
Query: 142 GKGVIIGVLDMGITPGHPS-----FSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN 196
+G++ +G S G+
Sbjct: 24 AANTTVGIITIGGVSQTLQDLQQFTSANGLASVN------------------------TQ 59
Query: 197 KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPE 256
+ N + + + + G A A +
Sbjct: 60 TIQTGSSNGDYSDDQQGQGEWDLDSQ---------SIVGSAGGAVQQLLFYMADQSASGN 110
Query: 257 SIVNAAIDAAVEE-GVDVLSISLG----SPSLPFFADAMATAAFTASQKGILVSCSAGNS 311
+ + A + AV + V+++SLG + A TA+ +G S S+G+
Sbjct: 111 TGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDE 170
Query: 312 GPNSST 317
G
Sbjct: 171 GVYECN 176
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.85 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.63 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.31 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 95.98 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.04 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=2.2e-53 Score=493.55 Aligned_cols=360 Identities=23% Similarity=0.258 Sum_probs=261.5
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHH----HH--hh
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEV----KA--ME 102 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~----~~--L~ 102 (745)
+..+++|||.||+... . ++++++ .+.++++.+. .++.+.++++...+ +. +.
T Consensus 28 ~~~~~~~iV~~k~~~~---------~----~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (671)
T d1r6va_ 28 EYTEGKILVGYNDRSE---------V----DKIVKA---------VNGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKAL 84 (671)
T ss_dssp SBCTTEEEEEESSHHH---------H----HHHHHH---------HTCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTS
T ss_pred CcCCCeEEEEECCccC---------H----HHHHHh---------cCCEEEEEec-ccceEEEEcCchhHHHHHHHHHHh
Confidence 3468999999986532 1 222222 2345566655 56667777754322 22 34
Q ss_pred cCCCeEEEEEccccCCCCC----CC-----------------------CCccCccC--CCCCccCCCCCCccEEEEecCC
Q 042259 103 TKSGFISARVENILEPQTT----HS-----------------------PNFLGLHQ--NSGFWKDSNLGKGVIIGVLDMG 153 (745)
Q Consensus 103 ~~p~V~~v~~~~~~~~~~~----~s-----------------------~~~~g~~~--~~~~~~~~~~G~gv~VaVIDtG 153 (745)
.+|+|++|||+...++... .. ...|++++ ..++|....+|+||+|||||||
T Consensus 85 ~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtG 164 (671)
T d1r6va_ 85 ALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTG 164 (671)
T ss_dssp CCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESC
T ss_pred cCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCC
Confidence 5899999999855443210 00 01233332 2233334569999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCC-----CCCCCCCCCCChhhhhhhhcccccCCCcccCC
Q 042259 154 ITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN-----KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQ 228 (745)
Q Consensus 154 id~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~-----~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~ 228 (745)
||++||+|.++- +..+++.. ...++.|..||||||||||||+..
T Consensus 165 vd~~Hpdl~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~-------- 213 (671)
T d1r6va_ 165 VDGTHPDLEGQV-----------------------IAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD-------- 213 (671)
T ss_dssp CBTTSGGGTTTB-----------------------CCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS--------
T ss_pred cCCCChhhcCCc-----------------------ccCccccccCCCCCCCcCcccCCCCccccceeeeecc--------
Confidence 999999998641 11222211 113456788999999999998742
Q ss_pred CCcceeeeccCceEEeeecccC-----CCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCc
Q 042259 229 ANGTAAGMAPLAHLAIYKVCET-----DLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGI 302 (745)
Q Consensus 229 ~~g~~~GvAP~A~l~~~kv~~~-----~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi 302 (745)
+.+ +.||||+|+|+++|+++. ..+ .....+++||+||+++|++|||||||+.. ....+..++..+.++|+
T Consensus 214 ~~g-~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv 289 (671)
T d1r6va_ 214 GKG-IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGV 289 (671)
T ss_dssp SSS-CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTC
T ss_pred ccc-eeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---CChHHHHHHHHHHhccC
Confidence 122 479999999999999972 123 56778999999999999999999999763 22345555668889999
Q ss_pred EEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccC
Q 042259 303 LVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCL 381 (745)
Q Consensus 303 ~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 381 (745)
++|+||||++.+. ..+++..|++|+|||++.+.
T Consensus 290 ~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~---------------------------------------------- 323 (671)
T d1r6va_ 290 VMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG---------------------------------------------- 323 (671)
T ss_dssp EEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET----------------------------------------------
T ss_pred cEEEEEecCCCCccccCCccCCceEEEEEecCCC----------------------------------------------
Confidence 9999999998765 46778899999999953111
Q ss_pred CCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCC
Q 042259 382 PETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSS 461 (745)
Q Consensus 382 ~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 461 (745)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc---------cCCCcccceeeeccc
Q 042259 462 PTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE---------NITNTKSTFTMISGT 532 (745)
Q Consensus 462 ~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~---------~~~~~~~~y~~~sGT 532 (745)
....++.||+|||.. ||+|||++|+++++.... ......+.|..++||
T Consensus 324 ---------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGT 380 (671)
T d1r6va_ 324 ---------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGT 380 (671)
T ss_dssp ---------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESH
T ss_pred ---------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCH
Confidence 011678999999986 999999999999875431 112234689999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCccc
Q 042259 533 SMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVY 606 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~ 606 (745)
|||||||||++|||+|++|+|++.|||++|++||+++... ..+..||||+||+.+||+..+..
T Consensus 381 S~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vna~~Av~~~~~~ 443 (671)
T d1r6va_ 381 SMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPLPT 443 (671)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChhCHHHHhhCcCCC
Confidence 9999999999999999999999999999999999987543 35678999999999999865443
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=3.1e-49 Score=412.37 Aligned_cols=265 Identities=29% Similarity=0.423 Sum_probs=215.1
Q ss_pred cCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCC
Q 042259 127 LGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDN 204 (745)
Q Consensus 127 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~ 204 (745)
|+++. ++.+|+.+++|+||+|+|||||||++||+|.++ ++..+++......+.|.
T Consensus 13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~~~~~d~ 69 (280)
T d1dbia_ 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------VIKGYDFVDNDYDPMDL 69 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------EEEEEETTTTBSCCCCS
T ss_pred cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC-----------------------eeecccccCCCCccccc
Confidence 44443 456999999999999999999999999999853 55667777665677889
Q ss_pred CCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 042259 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP 284 (745)
Q Consensus 205 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~ 284 (745)
.+|||||||+|+|...+ .+.+.||||+|+|+.+|+++....+...++++||+|++++|++|||+|||.....
T Consensus 70 ~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~~~ 141 (280)
T d1dbia_ 70 NNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHT 141 (280)
T ss_dssp SSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCCCC
T ss_pred cccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccccc
Confidence 99999999999987532 2235899999999999999833348889999999999999999999999986422
Q ss_pred ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCc
Q 042259 285 FFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQ 364 (745)
Q Consensus 285 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (745)
+....+...+.++|+++|+||||+|......++..+++|+||+.+
T Consensus 142 ---~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~-------------------------------- 186 (280)
T d1dbia_ 142 ---TTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD-------------------------------- 186 (280)
T ss_dssp ---HHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC--------------------------------
T ss_pred ---hhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec--------------------------------
Confidence 223344457889999999999999988888888999999999942
Q ss_pred eeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEE
Q 042259 365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCccc
Q 042259 445 SYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 524 (745)
..+.++.||++||.. |++|||.+|++.... .
T Consensus 187 --------------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~---------~ 217 (280)
T d1dbia_ 187 --------------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG---------N 217 (280)
T ss_dssp --------------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT---------T
T ss_pred --------------------------------CCCCcCCcCCCCCcc--------cccCCccceeccccC---------c
Confidence 123678999999976 999999999999887 7
Q ss_pred ceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
.|..++|||||||+|||++|||+|. .+++.+||++|++||+++.. +...||+|+||+++||+
T Consensus 218 ~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 218 RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-------------CCCcCCCCeEcHHHHcC
Confidence 8999999999999999999999995 55899999999999987632 34579999999999986
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=2.2e-49 Score=440.27 Aligned_cols=359 Identities=26% Similarity=0.326 Sum_probs=231.0
Q ss_pred CCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCC--CCCCCCCCCChhhh
Q 042259 134 GFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNK--SEPPIDNDGHGTHT 211 (745)
Q Consensus 134 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~--~~~~~d~~gHGThV 211 (745)
.+|. .+|+||+|+|||||||++||+|.++ ++..+++... ...+.|++||||||
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~~d~~gHGThv 69 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTGNWYQPGNNNAHGTHV 69 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSCCTTCCCSSCCHHHHH
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC-----------------------eeeeeccCCCCCCCCCCCCCCcHHHH
Confidence 3554 4899999999999999999999864 3333444322 24567889999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeecc--CceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCCChhh
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAP--LAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLPFFAD 288 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP--~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~~~~~ 288 (745)
||||||+..+ .+ +.|||| +++|+.+|++.....+...++++||+++++ .+++|||+|||.... ..
T Consensus 70 Agiiag~~~~--------~g-~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~~---~~ 137 (435)
T d1v6ca_ 70 AGTIAAIANN--------EG-VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGS---TT 137 (435)
T ss_dssp HHHHHCCCSS--------SB-CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCC---BH
T ss_pred HHHHhccCCC--------Cc-eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCCC---CH
Confidence 9999997422 12 479999 899999999983333677789999999986 599999999998743 23
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeee--eeeeccCCCC-------
Q 042259 289 AMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETY--DGETIFQPKD------- 359 (745)
Q Consensus 289 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------- 359 (745)
.+..++..+.++|+++|+||||+|....++++.++++|+||+++.+.........+....+ .|..++....
T Consensus 138 ~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g~~~~~ 217 (435)
T d1v6ca_ 138 TERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLA 217 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTTCEEEE
T ss_pred HHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeeeecCCCccc
Confidence 3445556788999999999999999999999999999999998765432110000100000 0000000000
Q ss_pred ---------CCCCc--eeeEecCCCC---C--------CCCcc--CCCCCCCCcccceEEEEeeCCCc-----chhhhhh
Q 042259 360 ---------FPSKQ--LPLVYPGVKN---S--------SAAFC--LPETLKSIDVKGKVVLCQRGGGT-----QRIRKGK 410 (745)
Q Consensus 360 ---------~~~~~--~~~~~~~~~~---~--------~~~~c--~~~~~~~~~~~g~ivl~~~~g~~-----~~~~~~~ 410 (745)
+.... ...+...... . ....| ....+...++.+++.++ .+... ....+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 296 (435)
T d1v6ca_ 218 DITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV-ERVGNQGSSYPEINSTK 296 (435)
T ss_dssp EEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEE-ECCSCSSSSCTHHHHHH
T ss_pred ccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccccccccee-eccCCccccceeeeece
Confidence 00000 0000000000 0 00000 00112233445555555 33221 1223333
Q ss_pred hHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCC
Q 042259 411 DVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPN 490 (745)
Q Consensus 411 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~ 490 (745)
.....++.+++.++ ++.+|.
T Consensus 297 ~~~~~~~~~~~~~~------------------------------------------------------------~~~~~~ 316 (435)
T d1v6ca_ 297 ACKTAGAKGIIVYS------------------------------------------------------------NSALPG 316 (435)
T ss_dssp HHHHTTCSEEEEEC------------------------------------------------------------CSSSCS
T ss_pred eecccCCcceEEec------------------------------------------------------------cCCCCC
Confidence 34444444444333 333333
Q ss_pred CCC--CCCccCceEeCCccEEeccCCCC--------ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 042259 491 TAS--PGILKPDIIGPGVSILAAWPFSE--------ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS 560 (745)
Q Consensus 491 ~~~--~g~~KPDi~APG~~I~sa~~~~~--------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~ 560 (745)
... .+..|||+.+||..|.++..... .........|..|+|||||||||||++|||+|+||+|+++|||+
T Consensus 317 ~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~ 396 (435)
T d1v6ca_ 317 LQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRA 396 (435)
T ss_dssp CCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred cCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 211 24678999999988875532111 01112236799999999999999999999999999999999999
Q ss_pred HHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 561 AIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 561 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
+||+||+++.. ++++++||+|+||+.+|++
T Consensus 397 ~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 397 ALNATADDLSV-----------AGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp HHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH
T ss_pred HHHhhCcccCC-----------CCCCCCcccceecHHHHHH
Confidence 99999997743 3567899999999999975
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=4e-49 Score=410.85 Aligned_cols=257 Identities=32% Similarity=0.499 Sum_probs=216.5
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
...+|..+++|+||+|||||||||++||+|+ +...++|..+...+.|.++|||||
T Consensus 13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-------------------------~~~~~~~~~~~~~~~d~~gHGT~v 67 (274)
T d1r0re_ 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGEAYNTDGNGHGTHV 67 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTCCTTCCSSSHHHHH
T ss_pred hHHHHHcCCCCCCeEEEEECCCCCCCChhhc-------------------------ccCCccccCCCCCCCCcccccccc
Confidence 4558999999999999999999999999995 334667776656777889999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHH
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAM 290 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~ 290 (745)
||||++.... .+ +.|+||+|+|+.+++++ ..+ ...++++++++++.+++++|+|+|||...... ..
T Consensus 68 Agii~~~~~~--------~~-~~gvap~a~i~~~~~~~-~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~~~~---~~ 134 (274)
T d1r0re_ 68 AGTVAALDNT--------TG-VLGVAPSVSLYAVKVLN-SSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGST---AM 134 (274)
T ss_dssp HHHHHCCSSS--------SB-CCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSCCH---HH
T ss_pred cccccccccc--------cc-ccccCCCcEEEEEEEeC-CCCCcCHHHHHHHHHHHHhcCCceeccccccccchh---hh
Confidence 9999987432 12 37999999999999998 555 67889999999999999999999999874332 23
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCC----CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCcee
Q 042259 291 ATAAFTASQKGILVSCSAGNSGPNS----STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLP 366 (745)
Q Consensus 291 ~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (745)
.....++.++++++|+||||+|... ..++...+++|+||+.+.
T Consensus 135 ~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------------------------------- 181 (274)
T d1r0re_ 135 KQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------------------------------- 181 (274)
T ss_dssp HHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------------------------------
T ss_pred hHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC---------------------------------
Confidence 3334478899999999999998653 344567889999998421
Q ss_pred eEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEch
Q 042259 367 LVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSY 446 (745)
Q Consensus 367 ~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 446 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccce
Q 042259 447 AAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTF 526 (745)
Q Consensus 447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y 526 (745)
.+.+++||++||. |||+|||++|+++.+. +.|
T Consensus 182 -------------------------------~~~~~~~s~~g~~--------~di~APG~~i~~~~~~---------~~~ 213 (274)
T d1r0re_ 182 -------------------------------NSNRASFSSVGAE--------LEVMAPGAGVYSTYPT---------NTY 213 (274)
T ss_dssp -------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEEETT---------TEE
T ss_pred -------------------------------CCCcccccCCCCC--------EEEEecCCCcccccCC---------CCe
Confidence 1267899999985 4999999999999887 789
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
..++|||||||+|||++|||+|++|+|++++||++|++||+++. +...||+|+||+++|++
T Consensus 214 ~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 214 ATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred EeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCceEcCeecHHHhcC
Confidence 99999999999999999999999999999999999999998752 35689999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=8.2e-48 Score=401.99 Aligned_cols=259 Identities=31% Similarity=0.475 Sum_probs=221.4
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
++.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.+++..+.|..+|||||
T Consensus 20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~HGT~v 75 (279)
T d1thma_ 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------VVGGWDFVDNDSTPQNGNGHGTHC 75 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEETTTTBSCCCCSSSHHHHH
T ss_pred HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC-----------------------eeccccccccCccccccccccccc
Confidence 45689887 999999999999999999999853 566778887767788999999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHH
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMA 291 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~ 291 (745)
||+|++...+ ...+.|+||+|+|+.+|++.....+...+++++|+++.+.+++|+|+|||..... ....
T Consensus 76 ag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~~~---~~~~ 144 (279)
T d1thma_ 76 AGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGN---SGLQ 144 (279)
T ss_dssp HHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSCC---HHHH
T ss_pred ceeeeeccCC--------CccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccccc---hhHH
Confidence 9999988532 2235899999999999999833348888999999999999999999999986432 3334
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecC
Q 042259 292 TAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPG 371 (745)
Q Consensus 292 ~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (745)
.+...+.++|+++|+|+||+|......+...+++|+|||++
T Consensus 145 ~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~--------------------------------------- 185 (279)
T d1thma_ 145 QAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD--------------------------------------- 185 (279)
T ss_dssp HHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC---------------------------------------
T ss_pred HHHHHHHhcCceEEEeccccccCCCcccccccccccccccc---------------------------------------
Confidence 45557889999999999999998888888999999999952
Q ss_pred CCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHH
Q 042259 372 VKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGER 451 (745)
Q Consensus 372 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~ 451 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d1thma_ 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeecc
Q 042259 452 IKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISG 531 (745)
Q Consensus 452 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 531 (745)
..+.++.||++|++. ||+|||.+|+++.+. +.|..++|
T Consensus 186 -------------------------~~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~---------~~~~~~sG 223 (279)
T d1thma_ 186 -------------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---------STYASLSG 223 (279)
T ss_dssp -------------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETT---------TEEEEECS
T ss_pred -------------------------CCCCCccccCCCceE--------EEeeeeeccccccCc---------ccccccCC
Confidence 123678999999987 999999999999988 78999999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 532 TSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
||||||+|||++|||+|.+| ++.+||++|++||+++. ..+..||+|+||+.+||+
T Consensus 224 TS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~-------------g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 224 TSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS-------------GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT-------------TBTTTBSSEECCHHHHHH
T ss_pred cchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC-------------CCCCcceeeeEcHHHhhC
Confidence 99999999999999999765 79999999999998763 234579999999999975
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1e-47 Score=398.90 Aligned_cols=257 Identities=33% Similarity=0.495 Sum_probs=219.0
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
.+.+|+.+++|+||+|+||||||+ +||+|.. ...++|..+...+.|.++|||||
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~-------------------------~~~~~~~~~~~~~~d~~~HGT~v 66 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNI-------------------------RGGASFVPGEPSTQDGNGHGTHV 66 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCE-------------------------EEEEECSTTCCSCSCSSSHHHHH
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCc-------------------------cccccccCCCCCccccchhhhee
Confidence 456999999999999999999998 8999963 23556776656778899999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHH
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMA 291 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~ 291 (745)
||||++.... ....|+||+|+|+.+|++..........+.++++++..+++++||+|||..... ....
T Consensus 67 Agii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~~~---~~~~ 134 (269)
T d1gcia_ 67 AGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPS---ATLE 134 (269)
T ss_dssp HHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSCC---HHHH
T ss_pred cccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccccc---chHH
Confidence 9999987422 224799999999999999833347788899999999999999999999976432 2233
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecC
Q 042259 292 TAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPG 371 (745)
Q Consensus 292 ~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (745)
.+...+.++|+++|+||||+|.....+++..+++|+||+++.
T Consensus 135 ~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------------------------------- 176 (269)
T d1gcia_ 135 QAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ-------------------------------------- 176 (269)
T ss_dssp HHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT--------------------------------------
T ss_pred HHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc--------------------------------------
Confidence 444578899999999999999988888999999999999521
Q ss_pred CCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHH
Q 042259 372 VKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGER 451 (745)
Q Consensus 372 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~ 451 (745)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeecc
Q 042259 452 IKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISG 531 (745)
Q Consensus 452 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 531 (745)
.+.++.||++||.. ||+|||.++.++.+. ..|..++|
T Consensus 177 --------------------------~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~---------~~~~~~sG 213 (269)
T d1gcia_ 177 --------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG---------STYASLNG 213 (269)
T ss_dssp --------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT---------TEEEEECS
T ss_pred --------------------------CCCcccccCCCCCc--------eEEEeeecceeccCC---------CceEecCC
Confidence 12678999999876 999999999999887 78999999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 532 TSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
||||||+|||++|||+|++|+|++++||++|++||+++. ++..||+|+||+++|++
T Consensus 214 TS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------------~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 214 TSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred cchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCeEcHHHhcC
Confidence 999999999999999999999999999999999998763 34579999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.3e-47 Score=400.94 Aligned_cols=257 Identities=33% Similarity=0.514 Sum_probs=214.7
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCC-CCCCCChhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP-IDNDGHGTH 210 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~-~d~~gHGTh 210 (745)
++.+|+.+++|+||+|+|||||||++||+|+. ...+++......+ .+..+||||
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~-------------------------~~~~~~~~~~~~~~~~~~~HGT~ 67 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-------------------------AGGASMVPSETNPFQDNNSHGTH 67 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-------------------------EEEEECCTTCCCTTCCSSSHHHH
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhh-------------------------cCCccccCCCCCCCcCcCCCCce
Confidence 45699999999999999999999999999963 2344454433333 346799999
Q ss_pred hhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhH
Q 042259 211 TASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 211 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~ 289 (745)
|||||+|..... ...|+||+|+|+.+|++. ..+ ....+++++|+|+++.+++|+|+|||... ....
T Consensus 68 vAgiiag~~~~~---------~~~giAp~a~l~~~kv~~-~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~~---~~~~ 134 (281)
T d1to2e_ 68 VAGTVAALNNSI---------GVLGVAPSASLYAVKVLG-ADGSGQYSWIINGIEWAIANNMDVINMSLGGPS---GSAA 134 (281)
T ss_dssp HHHHHHCCSSSS---------SBCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHH
T ss_pred eecccccCCCCC---------CcceeecccEEEEEEEeC-CCCCcCHHHHHHHHHHHHhccccccccccCCCc---chHH
Confidence 999999874221 147999999999999998 555 77889999999999999999999999763 2344
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCCC----CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCce
Q 042259 290 MATAAFTASQKGILVSCSAGNSGPNS----STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQL 365 (745)
Q Consensus 290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (745)
+..++..+.++|+++|+||||+|... ...++..+++|+||+.+.
T Consensus 135 ~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~-------------------------------- 182 (281)
T d1to2e_ 135 LKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS-------------------------------- 182 (281)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT--------------------------------
T ss_pred HHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC--------------------------------
Confidence 55566688899999999999998753 335677889999998521
Q ss_pred eeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEc
Q 042259 366 PLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVS 445 (745)
Q Consensus 366 ~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 445 (745)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccc
Q 042259 446 YAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKST 525 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~ 525 (745)
.+.++.||++||.. |++|||.+|+++.+. +.
T Consensus 183 --------------------------------~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~---------~~ 213 (281)
T d1to2e_ 183 --------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTLPG---------NK 213 (281)
T ss_dssp --------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEETT---------TE
T ss_pred --------------------------------CCCCCcccCCCCCc--------cccCCCCCceeecCC---------Ce
Confidence 12678999999977 999999999999887 78
Q ss_pred eeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 526 FTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 526 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
|..++|||||||+|||++|||+|++|+|++.+||++|++||+++. +...||+|+||+.+|++
T Consensus 214 ~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 214 YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQ 275 (281)
T ss_dssp EEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTS
T ss_pred eEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCcccHHHHHh
Confidence 999999999999999999999999999999999999999998763 24579999999999998
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.7e-43 Score=373.15 Aligned_cols=290 Identities=28% Similarity=0.375 Sum_probs=218.4
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC----C
Q 042259 126 FLGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS----E 199 (745)
Q Consensus 126 ~~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~----~ 199 (745)
.|++++ .+.+|..+++|+||+|+|||||||++||+|.++ +...++|.... .
T Consensus 7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~ 63 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPINN 63 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCEET
T ss_pred ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc-----------------------ccccccccCCCCCCCC
Confidence 356554 677999999999999999999999999999853 34445555332 3
Q ss_pred CCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCC-----CcEE
Q 042259 200 PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEG-----VDVL 274 (745)
Q Consensus 200 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-----~dVI 274 (745)
...|..+|||||||||+|....+ ...+.||||+|+|+.++++.....+..++++.+++++++.+ ..|+
T Consensus 64 ~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~ 136 (309)
T d2ixta1 64 SCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII 136 (309)
T ss_dssp CCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred Ccccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccc
Confidence 45678899999999999875322 22347999999999999998333478888999999888753 4699
Q ss_pred EEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeee
Q 042259 275 SISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGE 352 (745)
Q Consensus 275 n~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 352 (745)
|+||+.... ......+...+.++|+++|+||||++.... .+++..+++++|++........
T Consensus 137 ~~s~~~~~~---~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~-------------- 199 (309)
T d2ixta1 137 SMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNG-------------- 199 (309)
T ss_dssp EECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETT--------------
T ss_pred ccccccccc---ccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccc--------------
Confidence 999997642 223334445778899999999999987654 3456678888888753211000
Q ss_pred eccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc
Q 042259 353 TIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT 432 (745)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 432 (745)
...
T Consensus 200 ----------------------------------------~~~------------------------------------- 202 (309)
T d2ixta1 200 ----------------------------------------TYR------------------------------------- 202 (309)
T ss_dssp ----------------------------------------EEE-------------------------------------
T ss_pred ----------------------------------------ccc-------------------------------------
Confidence 000
Q ss_pred cccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEecc
Q 042259 433 VADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAW 512 (745)
Q Consensus 433 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~ 512 (745)
.........++++|+.. ....||||+|||.+|+++.
T Consensus 203 ------------------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~ 238 (309)
T d2ixta1 203 ------------------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTW 238 (309)
T ss_dssp ------------------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEEC
T ss_pred ------------------------------------------ccccccccccccccccc--cCCCcceeecCCCceeeec
Confidence 00111344667777776 4568999999999999998
Q ss_pred CCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259 513 PFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG 592 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 592 (745)
+. ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+.. .....+++.+|||
T Consensus 239 ~~---------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~----g~~~~~~~~~g~G 305 (309)
T d2ixta1 239 YN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFG 305 (309)
T ss_dssp TT---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST----TCCSSSBTTTBTC
T ss_pred CC---------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc----CCccCCCcccCCC
Confidence 87 7899999999999999999999999999999999999999999987654321 1234567788999
Q ss_pred CCCc
Q 042259 593 HVNP 596 (745)
Q Consensus 593 ~vn~ 596 (745)
++|+
T Consensus 306 ~~~v 309 (309)
T d2ixta1 306 FARV 309 (309)
T ss_dssp BCCC
T ss_pred EecC
Confidence 9874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=6.6e-43 Score=364.49 Aligned_cols=238 Identities=32% Similarity=0.437 Sum_probs=192.7
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcc
Q 042259 138 DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAG 217 (745)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag 217 (745)
...+|+||+|+|||||||++||+|.++ +.....+. ..+.|.++|||||||||+|
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~-----------------------~~~~~~~~---~~~~d~~gHGT~VAgiia~ 79 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYY---YSSRDGNGHGTHCAGTVGS 79 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESS---SCSSCSSSHHHHHHHHHHC
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC-----------------------ceeccCCC---CCcccccCccccccccccc
Confidence 445999999999999999999999864 11122222 3456789999999999998
Q ss_pred cccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhC-------CCcEEEEccCCCCCCChhhHH
Q 042259 218 NFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEE-------GVDVLSISLGSPSLPFFADAM 290 (745)
Q Consensus 218 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~-------g~dVIn~S~G~~~~~~~~~~~ 290 (745)
.. .|+||+|+|+.+|++........+.+..+++++... +++|+|+|||.... +.+
T Consensus 80 ~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~~~----~~~ 141 (279)
T d2pwaa1 80 RT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYS----SSV 141 (279)
T ss_dssp TT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEECC----HHH
T ss_pred cc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCccc----ccc
Confidence 63 699999999999999834447788889999988764 34599999997543 344
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCCC-cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEe
Q 042259 291 ATAAFTASQKGILVSCSAGNSGPNSST-LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVY 369 (745)
Q Consensus 291 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (745)
..++..+.++|+++|+||||++.+... .+...|++|+|||.+
T Consensus 142 ~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~------------------------------------- 184 (279)
T d2pwaa1 142 NSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD------------------------------------- 184 (279)
T ss_dssp HHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-------------------------------------
T ss_pred chhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe-------------------------------------
Confidence 455557889999999999999876543 567789999999842
Q ss_pred cCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhH
Q 042259 370 PGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAG 449 (745)
Q Consensus 370 ~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g 449 (745)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeee
Q 042259 450 ERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMI 529 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~ 529 (745)
..+.++.||++||.. ||+|||.+|+++++. +.|..+
T Consensus 185 ---------------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~---------~~~~~~ 220 (279)
T d2pwaa1 185 ---------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIG---------GSTRSI 220 (279)
T ss_dssp ---------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETT---------TEEEEE
T ss_pred ---------------------------ecCCCccccCCCCcc--------ccccccccccccccC---------CcccCC
Confidence 123678999999976 999999999999987 789999
Q ss_pred ccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCc
Q 042259 530 SGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNP 596 (745)
Q Consensus 530 sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 596 (745)
+|||||||+|||++|||+|++|.++++++|. |++||++. .....|+|++|+
T Consensus 221 sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~---------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 221 SGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG---------------DLSNIPFGTVNL 271 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES---------------CCBSCCTTSCCE
T ss_pred CcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC---------------CCCCCCCCChhh
Confidence 9999999999999999999999999888775 67788753 234689999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=8.8e-42 Score=362.87 Aligned_cols=292 Identities=27% Similarity=0.349 Sum_probs=218.9
Q ss_pred CCccC-CCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhh
Q 042259 134 GFWKD-SNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTA 212 (745)
Q Consensus 134 ~~~~~-~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVA 212 (745)
.+|.. |+||+||+|||||||||++||+|.... . ...++...+.+... .++.|..|||||||
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~-----------~~~~~~~~~~~~~~-~~~~d~~gHGT~vA 73 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A-----------FRGKITALYALGRT-NNANDTNGHGTHVA 73 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T-----------TTTCEEEEEETTTT-TCCCCSSSHHHHHH
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc------c-----------cCCcEEeecCCCCC-CCCCCCCCCCccce
Confidence 36775 999999999999999999999997531 0 22345555555433 56678899999999
Q ss_pred hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhH
Q 042259 213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG---CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~ 289 (745)
|||+|+... ..||||+|+|+.+|++. ..+ .....+..+++++...+++|+|+|||..........
T Consensus 74 giiag~~~~-----------~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~~~~~ 141 (318)
T d1wmda2 74 GSVLGNGST-----------NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTD 141 (318)
T ss_dssp HHHHCCSSS-----------SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCCCHH
T ss_pred eeccccccc-----------cchhhhcccceeeeeee-ecccccccchhhHHHHHHHHhcCCceeecccccccccccchh
Confidence 999987422 26999999999999998 443 344557889999999999999999998754444444
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCCCCCcc--cCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceee
Q 042259 290 MATAAFTASQKGILVSCSAGNSGPNSSTLA--NEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPL 367 (745)
Q Consensus 290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (745)
...+...+.++++++|+|+||.|....... ...++++++.+........
T Consensus 142 ~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------------- 192 (318)
T d1wmda2 142 SRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----------------------------- 192 (318)
T ss_dssp HHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----------------------------
T ss_pred HHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-----------------------------
Confidence 555555677899999999999998765543 3566777776642111000
Q ss_pred EecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchH
Q 042259 368 VYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
.
T Consensus 193 ------------~------------------------------------------------------------------- 193 (318)
T d1wmda2 193 ------------G------------------------------------------------------------------- 193 (318)
T ss_dssp ------------C-------------------------------------------------------------------
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc---cCCCccc
Q 042259 448 AGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE---NITNTKS 524 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~---~~~~~~~ 524 (745)
........+..||++||.. ....|||++|||.+|+++...... .......
T Consensus 194 -------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~ 246 (318)
T d1wmda2 194 -------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS 246 (318)
T ss_dssp -------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGSSEEEET
T ss_pred -------------------------cccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCccccCCCc
Confidence 0011223667899999987 567899999999999998776441 1122235
Q ss_pred ceeeeccccchhHHHHHHHHHHHhhCC-----CCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCC
Q 042259 525 TFTMISGTSMSCPHLSGIAALLKSAHP-----DWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~p-----~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A 599 (745)
.|..++|||||||+|||++|||+|++| .+++.+||++|++||+++.. +.++..||||+||+.+|
T Consensus 247 ~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-----------~~~~~~~G~G~ld~~~A 315 (318)
T d1wmda2 247 KYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVTLDKS 315 (318)
T ss_dssp TEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCCHHHH
T ss_pred ceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-----------CCCCCCeeeceecHHHH
Confidence 678899999999999999999999754 67899999999999997643 34567899999999999
Q ss_pred CC
Q 042259 600 ND 601 (745)
Q Consensus 600 ~~ 601 (745)
|+
T Consensus 316 l~ 317 (318)
T d1wmda2 316 LN 317 (318)
T ss_dssp HT
T ss_pred hC
Confidence 86
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-39 Score=348.94 Aligned_cols=284 Identities=17% Similarity=0.221 Sum_probs=192.1
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
...+|..+++|+||+|||||||||++||+|.++.... ..|. +. .............|..+|||||
T Consensus 26 ~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~~~--~~~~--~~-----------~~~~~~~~~~~~~~~~gHGT~v 90 (334)
T d1p8ja2 26 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPG--ASFD--VN-----------DQDPDPQPRYTQMNDNRHGTRC 90 (334)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCGG--GCEE--TT-----------TTBSCCCCCCCTTCTTCHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccccC--CCcc--cc-----------CCCCccccccccccCccchhhh
Confidence 3459999999999999999999999999998642110 0000 00 0000011113345688999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC-C----
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLP-F---- 285 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~-~---- 285 (745)
||||+|...++. ...|+||+++++.+|+.. . ...+.+.++.++++ ++++++|+|||..... .
T Consensus 91 Agiia~~~~n~~--------~~~g~a~~a~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~~~~~~ 158 (334)
T d1p8ja2 91 AGEVAAVANNGV--------CGVGVAYNARIGGVRMLD-G---EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGP 158 (334)
T ss_dssp HHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS-S---CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCC
T ss_pred hhhhhhcccccc--------ccccccccccccchhhcc-c---cccchHHHHHHHhhhcCCcEEeCCCCCCCcCcccCCc
Confidence 999998853321 136999999999999987 2 33455667777765 6799999999975311 0
Q ss_pred ----hhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcc----cCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCC
Q 042259 286 ----FADAMATAAFTASQKGILVSCSAGNSGPNSSTLA----NEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP 357 (745)
Q Consensus 286 ----~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (745)
...........+..+|+++|+||||++....... ...+.+++|++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~------------------------- 213 (334)
T d1p8ja2 159 ARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------------------------- 213 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC-------------------------
T ss_pred cchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc-------------------------
Confidence 1122333334556799999999999876543322 1334455555532
Q ss_pred CCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCc
Q 042259 358 KDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNH 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 437 (745)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc-----cEEecc
Q 042259 438 VLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV-----SILAAW 512 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~-----~I~sa~ 512 (745)
..+....||++|+... .+..+||. .+.+..
T Consensus 214 ---------------------------------------~~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~ 248 (334)
T d1p8ja2 214 ---------------------------------------QFGNVPWYSEACSSTL------ATTYSSGNQNEKQIVTTDL 248 (334)
T ss_dssp ---------------------------------------TTSCCCTTCCBCTTCC------EEEECCCSTTSCCEEEEET
T ss_pred ---------------------------------------cCCceeeecccCCccc------ccccccccccccccccccc
Confidence 1124455566665441 13444442 233333
Q ss_pred CCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259 513 PFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG 592 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 592 (745)
.. ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++.......+.........+..||||
T Consensus 249 ~~---------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 319 (334)
T d1p8ja2 249 RQ---------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYG 319 (334)
T ss_dssp TT---------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTC
T ss_pred CC---------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCCcccCCCCcce
Confidence 33 678899999999999999999999999999999999999999998765544443333333445689999
Q ss_pred CCCccCCCC
Q 042259 593 HVNPSKAND 601 (745)
Q Consensus 593 ~vn~~~A~~ 601 (745)
+||+++||+
T Consensus 320 ~lna~~Av~ 328 (334)
T d1p8ja2 320 LLDAGAMVA 328 (334)
T ss_dssp BCCHHHHHH
T ss_pred EeCHHHHHH
Confidence 999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-39 Score=346.63 Aligned_cols=283 Identities=18% Similarity=0.214 Sum_probs=201.8
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC---CCCCCCCCCh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS---EPPIDNDGHG 208 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~---~~~~d~~gHG 208 (745)
...+|..+++|+||+|+|||||||++||+|.++... .+.++|.+.. ....++.+||
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~HG 93 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA---------------------EGSWDFNDNTNLPKPRLSDDYHG 93 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG---------------------GGCEETTTTBSCCCCCSTTTTHH
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc---------------------ccccccccCCCccCCCccccccc
Confidence 456899999999999999999999999999864111 0123343321 3345678999
Q ss_pred hhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC----
Q 042259 209 THTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP---- 284 (745)
Q Consensus 209 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~---- 284 (745)
|||||+|+|....+ ..+.||||+|+|+.+++.. . .....++..++.++++. .+|+|+|||.....
T Consensus 94 T~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~~~ 162 (339)
T d2id4a2 94 TRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILS-G-DITTEDEAASLIYGLDV-NDIYSCSWGPADDGRHLQ 162 (339)
T ss_dssp HHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTT-S-CCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSCCB
T ss_pred ceeeeccccccccc--------ccccccccccccceEEEee-c-cccchHHHHHHHHHHhh-CCEEeccCCCCCCccccc
Confidence 99999999875322 1247999999999999876 2 35666777888777665 48999999875311
Q ss_pred ----ChhhHH-HHHHHHHhcCCcEEEEccCCCCCCCCCc--cc--CCCceEEEeecccccceEEEEEeCCCeeeeeeecc
Q 042259 285 ----FFADAM-ATAAFTASQKGILVSCSAGNSGPNSSTL--AN--EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIF 355 (745)
Q Consensus 285 ----~~~~~~-~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (745)
.....+ ..+...+..+|+++|+||||++...... +. ..+.+++|+++
T Consensus 163 ~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 218 (339)
T d2id4a2 163 GPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI------------------------ 218 (339)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE------------------------
T ss_pred CccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc------------------------
Confidence 111222 2233355579999999999987654322 11 22334444442
Q ss_pred CCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccccc
Q 042259 356 QPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVAD 435 (745)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 435 (745)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCC
Q 042259 436 NHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFS 515 (745)
Q Consensus 436 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
...+..+.||++|+.. ...++..+||..+.++....
T Consensus 219 ----------------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~~ 254 (339)
T d2id4a2 219 ----------------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING 254 (339)
T ss_dssp ----------------------------------------CTTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECSTT
T ss_pred ----------------------------------------cccccccccccccCcc----ceeeeeeccccccceeccCC
Confidence 1223556777777654 34567888999998876552
Q ss_pred CccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCc-ccCCCCCCCCCcccCCCCC
Q 042259 516 EENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKP-IMNHHLLPADLFAVGAGHV 594 (745)
Q Consensus 516 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~-~~~~~~~~~~~~~~G~G~v 594 (745)
..|..++|||||||||||++|||+|++|+|++.|||.+|++||+.++..... +.+....+..+..||||+|
T Consensus 255 --------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~l 326 (339)
T d2id4a2 255 --------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKI 326 (339)
T ss_dssp --------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBC
T ss_pred --------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhh
Confidence 5688999999999999999999999999999999999999999987644322 2222233445667999999
Q ss_pred CccCCCCC
Q 042259 595 NPSKANDP 602 (745)
Q Consensus 595 n~~~A~~~ 602 (745)
|+.+||+.
T Consensus 327 n~~~Av~~ 334 (339)
T d2id4a2 327 DAHKLIEM 334 (339)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999983
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=1.7e-31 Score=287.41 Aligned_cols=313 Identities=19% Similarity=0.211 Sum_probs=185.9
Q ss_pred cCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhc
Q 042259 137 KDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAA 216 (745)
Q Consensus 137 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiia 216 (745)
.++++|+||+|||||||||++||+|.+. |+.. .+......+.+..+|+|||+|+++
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~----------------~~~~~~~~~~~~~g~~~~~~g~~~ 73 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL----------------GVSAPQVVSVSVDGATNQPTGDPN 73 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT----------------TCCCCCEEEEESTTCCCCCCSCTT
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc----------------CCCCCCCceeCCCCCCCCCCCccc
Confidence 3689999999999999999999999742 1100 000000122346678888888776
Q ss_pred ccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHH---hCCCcEEEEccCCCCC---CChhhHH
Q 042259 217 GNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV---EEGVDVLSISLGSPSL---PFFADAM 290 (745)
Q Consensus 217 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~---~~g~dVIn~S~G~~~~---~~~~~~~ 290 (745)
+...... .....+.||||+|+|+.+|+.. . ...++.++++++ +++++|||+|||.... ......+
T Consensus 74 ~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~-~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 144 (357)
T d1t1ga_ 74 GPDGEVE----LDIEVAGALAPGAKIAVYFAPN-T----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAM 144 (357)
T ss_dssp STHHHHH----HHHHHHHHHSTTSEEEEEECCS-S----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHH
T ss_pred ccccccc----CCcccceeecccCeEEEEeccc-C----CCchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHHH
Confidence 5432110 0011247999999999999987 2 334455555554 4689999999997532 2233455
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCCC--------cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 291 ATAAFTASQKGILVSCSAGNSGPNSST--------LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 291 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
......+..+|+++|+|+||+|..... .+...+++++|++....... +. ....+.+....
T Consensus 145 ~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~-~~~~~~~~~~~--- 212 (357)
T d1t1ga_ 145 NRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------GR-IERETVWNDGP--- 212 (357)
T ss_dssp HHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------SC-EEEEEECBCHH---
T ss_pred HHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------Cc-cccceeccccc---
Confidence 566667778999999999999854322 23466888998885322110 00 00000000000
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
. ... ..+ +.
T Consensus 213 ---~-~~~----------------------------~~~-----------------g~---------------------- 221 (357)
T d1t1ga_ 213 ---D-GGS----------------------------TGG-----------------GV---------------------- 221 (357)
T ss_dssp ---H-HCB----------------------------CCC-----------------EE----------------------
T ss_pred ---c-ccc----------------------------ccC-----------------Cc----------------------
Confidence 0 000 000 00
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccE--EeccCCCCccCC
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSI--LAAWPFSEENIT 520 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I--~sa~~~~~~~~~ 520 (745)
+..+ ............+++.+++. .++.|||+.+++... .+....
T Consensus 222 ----------------------s~~~---~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~------ 268 (357)
T d1t1ga_ 222 ----------------------SRIF---PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID------ 268 (357)
T ss_dssp ----------------------CSSS---CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET------
T ss_pred ----------------------cccc---ccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC------
Confidence 0000 00001123556777777776 789999999987654 444444
Q ss_pred CcccceeeeccccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHhcccccccCCCCcccCC----CCCCCCCcccCCCC
Q 042259 521 NTKSTFTMISGTSMSCPHLSGIAALLKSAHPD---WSPAAIKSAIMTTADIVNLEGKPIMNH----HLLPADLFAVGAGH 593 (745)
Q Consensus 521 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---~s~~~ik~~L~~TA~~~~~~g~~~~~~----~~~~~~~~~~G~G~ 593 (745)
+.|..++|||||||||||++|||+|+++. +...+++.+...+.+++.......... ...+.++..+|||+
T Consensus 269 ---~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~tG~G~ 345 (357)
T d1t1ga_ 269 ---GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGS 345 (357)
T ss_dssp ---TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTTBTCE
T ss_pred ---CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCccCch
Confidence 78999999999999999999999998753 233444443333333321110000000 13455677899999
Q ss_pred CCccCCCC
Q 042259 594 VNPSKAND 601 (745)
Q Consensus 594 vn~~~A~~ 601 (745)
+|+.++++
T Consensus 346 ~n~~~~~~ 353 (357)
T d1t1ga_ 346 PIGIRLLQ 353 (357)
T ss_dssp ECHHHHHH
T ss_pred hhHHHHHH
Confidence 99887765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=4.7e-28 Score=261.74 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=114.9
Q ss_pred CCCCCccEEEEecCCCCCC-CCCCCC----CCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhh
Q 042259 139 SNLGKGVIIGVLDMGITPG-HPSFSD----EGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAS 213 (745)
Q Consensus 139 ~~~G~gv~VaVIDtGid~~-Hp~f~~----~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAG 213 (745)
..+|+||+|||||+|.++. |+||.. .+++. ++ .... ....+..+||||+++
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~---------------~~-----~~~~----~~~~~~~~~~~~~~~ 76 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQFTSANGLAS---------------VN-----TQTI----QTGSSNGDYSDDQQG 76 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCC---------------CC-----EEEE----ECSCTTSCCCBCHHH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHHHHHhcCCCC---------------CC-----CCee----cCCCCCCCCCCCCCc
Confidence 4589999999999998754 666751 11110 00 0000 122346789999999
Q ss_pred hhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCC----CCChhh
Q 042259 214 TAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPS----LPFFAD 288 (745)
Q Consensus 214 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~----~~~~~~ 288 (745)
++++.... ..+.||||+|+|+.++++.........+++++|+||++ ++++|||+|||... .....+
T Consensus 77 ~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~ 147 (369)
T d1ga6a_ 77 QGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQ 147 (369)
T ss_dssp HHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHH
T ss_pred ceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHH
Confidence 98765311 12479999999999999983333777889999999986 57999999999753 234455
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCCCCC-------------CcccCCCceEEEeecc
Q 042259 289 AMATAAFTASQKGILVSCSAGNSGPNSS-------------TLANEAPWMLTVGAST 332 (745)
Q Consensus 289 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVga~~ 332 (745)
.+..++.++..+|++||+||||+|.... ..+...+++++|+++.
T Consensus 148 ~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 148 AEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 6667777888999999999999986432 2335678999999854
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=3.6e-09 Score=82.97 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=55.6
Q ss_pred CceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEE
Q 042259 32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISAR 111 (745)
Q Consensus 32 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~ 111 (745)
+++|||.||++..... ...+..++. ..+.++.+.|+ .++||+++|++++++.|+++|+|.+||
T Consensus 1 e~~YIV~fK~~~~~~~---~~~~~~~v~-------------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE 63 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMS---SAKKKDVIS-------------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVE 63 (71)
T ss_dssp CEEEEEEECSSSSCCS---HHHHHHHHH-------------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEE
T ss_pred CCcEEEEECCCCChHH---HHHHHHHHH-------------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEe
Confidence 4799999999976444 222222222 24779999998 799999999999999999999999999
Q ss_pred EccccCC
Q 042259 112 VENILEP 118 (745)
Q Consensus 112 ~~~~~~~ 118 (745)
+++.++.
T Consensus 64 ~D~v~~a 70 (71)
T d1scjb_ 64 EDHIAHE 70 (71)
T ss_dssp ECCEEEE
T ss_pred CCcEEEc
Confidence 9987653
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.63 E-value=1.5e-08 Score=79.65 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=49.8
Q ss_pred CceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEec-ceeeEEEEEeCHHHHHHhhcCCC--eE
Q 042259 32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYR-NVISGFAARLTAEEVKAMETKSG--FI 108 (745)
Q Consensus 32 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~-~~~~g~s~~l~~~~~~~L~~~p~--V~ 108 (745)
.|+|||.||++..... ...+..++.. .+..+.+.|. +.|+||+++++++.+++|+++|+ |.
T Consensus 2 aG~YIVvlK~~~~~~~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~ 65 (72)
T d1v5ib1 2 AGKFIVIFKNDVSEDK---IRETKDEVIA-------------EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLID 65 (72)
T ss_dssp CEEEEEEECTTCCHHH---HHHHHHHHHH-------------HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred CccEEEEECCCCCHHH---HHHHHHHHHh-------------cCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCc
Confidence 4899999999875322 2333333332 2456667777 68999999999999999999665 99
Q ss_pred EEEEcc
Q 042259 109 SARVEN 114 (745)
Q Consensus 109 ~v~~~~ 114 (745)
+||++.
T Consensus 66 yVE~D~ 71 (72)
T d1v5ib1 66 SIEEDH 71 (72)
T ss_dssp EEEECC
T ss_pred eECCCC
Confidence 999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.31 E-value=0.018 Score=47.38 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=61.3
Q ss_pred cCCCceeeecCCccEEEEEEEEecCCCCee-EEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEE
Q 042259 648 LNYPSFSVKLGSSPQTYNRTVTNVGQDNSF-YTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGY 726 (745)
Q Consensus 648 ln~ps~~~~~~~~~~~~~~tv~n~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~ 726 (745)
+..|++.+.-+ ...+++.+|+|.|+...+ -++.+..|.|-+++.. ...+.+ ||+++++++++++.......|.=.
T Consensus 6 ~t~p~~~v~pG-~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~--~~~L~p-G~s~~~~~~Vt~p~~a~~G~Y~i~ 81 (103)
T d1w8oa1 6 FTIPDVALEPG-QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGS--VEPLMP-GRQAKGQVTITVPAGTTPGRYRVG 81 (103)
T ss_dssp EECCCEEECTT-CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEE--ECCBCT-TCEEEEEEEEECCTTCCCEEEEEE
T ss_pred ccCcceeeCCC-CeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCc--ceeeCC-CCcEEEEEEEECCCCCCCceEEEE
Confidence 34466555433 369999999999987644 4678889999877544 445666 999999999999876442344444
Q ss_pred EEEEcCceEEEeeEE
Q 042259 727 LSWVSATHTVRSPIA 741 (745)
Q Consensus 727 ~~~~~~~~~v~~P~~ 741 (745)
+..+++.......+-
T Consensus 82 ~~a~~~~~~~s~t~t 96 (103)
T d1w8oa1 82 ATLRTSAGNASTTFT 96 (103)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEeCCcceEEEEE
Confidence 666665554444443
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0036 Score=57.38 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=55.4
Q ss_pred CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc-------------cc-------------------
Q 042259 387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT-------------VA------------------- 434 (745)
Q Consensus 387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-------------~~------------------- 434 (745)
..+++|||+|+ ++|.+.+.+|..+++..||.|+|+|.+....... .+
T Consensus 58 ~~~v~GkI~l~-r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~ 136 (193)
T d1de4c2 58 YTPVNGSIVIV-RAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR 136 (193)
T ss_dssp SSCCTTSEEEE-ESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCC
T ss_pred ccccCceEEEE-eCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccc
Confidence 35789999999 9999999999999999999999999764321000 00
Q ss_pred --cCccccEEEEchHhHHHHHHHHh
Q 042259 435 --DNHVLPAVYVSYAAGERIKAYIN 457 (745)
Q Consensus 435 --~~~~~p~~~i~~~~g~~l~~~~~ 457 (745)
....||+.-|+..|++.|+..+.
T Consensus 137 ~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 137 SSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred cCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 12347999999999999998774
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.017 Score=54.53 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=55.9
Q ss_pred CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC-------------------------------Ccccc--
Q 042259 387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF-------------------------------DYGTV-- 433 (745)
Q Consensus 387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-------------------------------~~~~~-- 433 (745)
.-+++|||+|+ ++|.+.+.+|..+++..||+|+|+|++... |....
T Consensus 76 gi~~~gkIvl~-ryG~~~~~~Kv~~A~~~GA~GviiysDP~d~~~~g~~~yP~~~~~p~~~vqrgsv~~~~~~GDplTPg 154 (233)
T d3bi1a2 76 KINCSGKIVIA-RYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPG 154 (233)
T ss_dssp CCCCTTCEEEE-ECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTSSSBCCTTCCCCEECCCCTTCCSTTCTT
T ss_pred CCcccceEEEE-eCCCCchhHHHHHHHHcCceEEEEecChHHccCcccccccCCccCCCCceeEeeeeecCCCCCCCCCC
Confidence 45789999999 999999999999999999999999986310 00000
Q ss_pred ---------------ccCccccEEEEchHhHHHHHHHHhc
Q 042259 434 ---------------ADNHVLPAVYVSYAAGERIKAYINS 458 (745)
Q Consensus 434 ---------------~~~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
.....||+.-|+..|+..|+..|..
T Consensus 155 ~ps~~~~~r~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~G 194 (233)
T d3bi1a2 155 YPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGG 194 (233)
T ss_dssp SCCCTTCCCCCGGGCSSCCSSCEEEECHHHHHHHHTTBCB
T ss_pred CCCCCCCcccChhHhcCCCCCceeccCHHHHHHHHHHcCC
Confidence 0124779999999999999988753
|