Citrus Sinensis ID: 042270

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
DWILSAPKENLHLPAPNVFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ
cccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccEEEEEEcccccccccEEEEEEEc
cccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEcccccEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccHccccEEEEEEcccccEEEEEEEccccccccEEEEEEc
dwilsapkenlhlpapnvfvptdlslkdtqeakfpvllrkssystlwykpdtmfstpkAFVNIyfncphassspeseVLTDIFTRLLHDYLNEYAYYAQVAGLYYginhteggFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKeyhnnkflqpYQLAMYYCSLIlqdqtwpwteelevlphleaedlaKFVPMMLSRTFLECYIagniesneagSIIQYIEDVffkgsnpicqplfpsqhltnRVVKLekgknyvysnqglnpsdenscLVHYIQ
dwilsapkenlhlpapnvFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYvysnqglnpsdenSCLVHYIQ
DWILSAPKENLHLPAPNVFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ
**************APNVFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA******EVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSN***********LV****
DWILS*PKENLHLPAPNVFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN*********QHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ
DWILSAPKENLHLPAPNVFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ
****SAPKENLHLPAPNVFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DWILSAPKENLHLPAPNVFVPTDLSLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
O22941 970 Zinc-metallopeptidase, pe yes no 1.0 0.295 0.725 1e-125
P14735 1019 Insulin-degrading enzyme yes no 0.902 0.254 0.355 3e-39
Q24K02 1019 Insulin-degrading enzyme yes no 0.898 0.253 0.365 4e-39
P35559 1019 Insulin-degrading enzyme yes no 0.902 0.254 0.351 9e-39
Q9JHR7 1019 Insulin-degrading enzyme yes no 0.902 0.254 0.348 8e-38
O14077 969 Putative zinc protease mu yes no 0.944 0.279 0.3 4e-35
Q06010 1027 A-factor-processing enzym yes no 0.947 0.264 0.310 1e-31
P22817 990 Insulin-degrading enzyme yes no 0.961 0.278 0.291 3e-31
O43847 1150 Nardilysin OS=Homo sapien no no 0.937 0.233 0.340 8e-31
Q5R4H6 1152 Nardilysin OS=Pongo abeli no no 0.937 0.233 0.340 9e-31
>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1 Back     alignment and function desciption
 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/288 (72%), Positives = 244/288 (84%), Gaps = 1/288 (0%)

Query: 1   DWILSAPKENLHLPAPNVFVPTDLSLKDTQEAK-FPVLLRKSSYSTLWYKPDTMFSTPKA 59
           +W+ SAP  +LHLPAPNVF+PTDLSLKD  + +  PVLLRK+ +S LWYKPDTMFS PKA
Sbjct: 473 EWVQSAPDVHLHLPAPNVFIPTDLSLKDADDKETVPVLLRKTPFSRLWYKPDTMFSKPKA 532

Query: 60  FVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVV 119
           +V + FNCP A SSP++ VLTDIFTRLL DYLNEYAYYAQVAGLYYG++ ++ GFE+T++
Sbjct: 533 YVKMDFNCPLAVSSPDAAVLTDIFTRLLMDYLNEYAYYAQVAGLYYGVSLSDNGFELTLL 592

Query: 120 GYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD 179
           GYNHKLRILLET+  KIA F+V+PDRF+VIKE VTKEY N KF QPY  AMYYCSLILQD
Sbjct: 593 GYNHKLRILLETVVGKIANFEVKPDRFAVIKETVTKEYQNYKFRQPYHQAMYYCSLILQD 652

Query: 180 QTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239
           QTWPWTEEL+VL HLEAED+AKFVPM+LSRTF+ECYIAGN+E+NEA S++++IEDV F  
Sbjct: 653 QTWPWTEELDVLSHLEAEDVAKFVPMLLSRTFIECYIAGNVENNEAESMVKHIEDVLFND 712

Query: 240 SNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287
             PIC+PLFPSQHLTNRVVKL +G  Y Y   G NPSDENS LVHYIQ
Sbjct: 713 PKPICRPLFPSQHLTNRVVKLGEGMKYFYHQDGSNPSDENSALVHYIQ 760
Peptidase that might be involved in pathogen or wound response. Not required for peroxisome biogenesis, indole-3-butyric acid (IBA) metabolism, fatty acid beta-oxidation or degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4 Back     alignment and function description
>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1 Back     alignment and function description
>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1 Back     alignment and function description
>sp|Q06010|STE23_YEAST A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2 Back     alignment and function description
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4 Back     alignment and function description
>sp|O43847|NRDC_HUMAN Nardilysin OS=Homo sapiens GN=NRD1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4H6|NRDC_PONAB Nardilysin OS=Pongo abelii GN=NRD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
225441825 965 PREDICTED: zinc-metallopeptidase, peroxi 0.996 0.296 0.783 1e-133
255582581 967 Insulin-degrading enzyme, putative [Rici 1.0 0.296 0.784 1e-132
224087014 949 predicted protein [Populus trichocarpa] 1.0 0.302 0.781 1e-130
255582579 909 Insulin-degrading enzyme, putative [Rici 0.996 0.314 0.724 1e-124
15227435 970 insulysin [Arabidopsis thaliana] gi|7509 1.0 0.295 0.725 1e-123
225441823 965 PREDICTED: zinc-metallopeptidase, peroxi 0.996 0.296 0.738 1e-123
356572034 964 PREDICTED: zinc-metallopeptidase, peroxi 0.996 0.296 0.742 1e-123
356504785 964 PREDICTED: zinc-metallopeptidase, peroxi 0.996 0.296 0.738 1e-123
110741612 970 putative zinc protease [Arabidopsis thal 1.0 0.295 0.722 1e-122
297827829 970 peptidase M16 family protein [Arabidopsi 1.0 0.295 0.722 1e-122
>gi|225441825|ref|XP_002283993.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739661|emb|CBI29843.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/287 (78%), Positives = 254/287 (88%), Gaps = 1/287 (0%)

Query: 2   WILSAPKENLHLPAPNVFVPTDLSLKDTQE-AKFPVLLRKSSYSTLWYKPDTMFSTPKAF 60
           W+L+AP E+LHLP+PNVF+PTDLSLKD QE AKFPVLLRKSSYSTLWYKPDTMFSTPKA+
Sbjct: 467 WMLAAPNEHLHLPSPNVFIPTDLSLKDVQEKAKFPVLLRKSSYSTLWYKPDTMFSTPKAY 526

Query: 61  VNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVG 120
           V I FNCP ASSSPE++VLTDIFTRLL DYLNEYAYYAQVAGLYYGINHT+ GF+V V G
Sbjct: 527 VKIDFNCPFASSSPEADVLTDIFTRLLMDYLNEYAYYAQVAGLYYGINHTDSGFQVAVTG 586

Query: 121 YNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ 180
           YNHKLRILLET+ +KIA FKV+PDRF VIKEMVTKEY N KF QPYQ AMYYCSLILQD 
Sbjct: 587 YNHKLRILLETVVEKIANFKVKPDRFLVIKEMVTKEYQNFKFQQPYQQAMYYCSLILQDN 646

Query: 181 TWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGS 240
           TWPW + LEV+PHLEA+DLAKFVPM+LSR FL+CYIAGNIE  EA S+I +IED+F+ G 
Sbjct: 647 TWPWMDGLEVIPHLEADDLAKFVPMLLSRAFLDCYIAGNIEPKEAESMIHHIEDIFYSGP 706

Query: 241 NPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287
           +PI QPLFPSQ+LTNRV+KL++G +Y Y  +GLNPSDENS LVHYIQ
Sbjct: 707 HPISQPLFPSQYLTNRVIKLDRGMSYFYPAEGLNPSDENSALVHYIQ 753

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582581|ref|XP_002532073.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528255|gb|EEF30307.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224087014|ref|XP_002308028.1| predicted protein [Populus trichocarpa] gi|222854004|gb|EEE91551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582579|ref|XP_002532072.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528254|gb|EEF30306.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15227435|ref|NP_181710.1| insulysin [Arabidopsis thaliana] gi|75097648|sp|O22941.1|PXM16_ARATH RecName: Full=Zinc-metallopeptidase, peroxisomal; AltName: Full=Peroxisomal M16 protease gi|2335108|gb|AAC02769.1| putative zinc protease [Arabidopsis thaliana] gi|330254939|gb|AEC10033.1| insulysin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225441823|ref|XP_002283970.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739662|emb|CBI29844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572034|ref|XP_003554175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|356504785|ref|XP_003521175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|110741612|dbj|BAE98754.1| putative zinc protease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827829|ref|XP_002881797.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297327636|gb|EFH58056.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2054346 970 AT2G41790 [Arabidopsis thalian 1.0 0.295 0.725 3.1e-115
TAIR|locus:2103523 891 AT3G57470 [Arabidopsis thalian 1.0 0.322 0.663 2.3e-103
ZFIN|ZDB-GENE-070410-85 998 ide "insulin-degrading enzyme" 0.933 0.268 0.35 4.8e-38
UNIPROTKB|P14735 1019 IDE "Insulin-degrading enzyme" 0.902 0.254 0.362 6.5e-38
UNIPROTKB|F1SC98 990 IDE "Uncharacterized protein" 0.902 0.261 0.362 7.8e-38
UNIPROTKB|Q24K02 1019 IDE "Insulin-degrading enzyme" 0.902 0.254 0.362 1.1e-37
RGD|2861 1019 Ide "insulin degrading enzyme" 0.902 0.254 0.351 2.2e-37
ASPGD|ASPL0000015933 1100 AN8044 [Emericella nidulans (t 0.947 0.247 0.327 3.4e-37
UNIPROTKB|E2RGZ3 1019 IDE "Uncharacterized protein" 0.916 0.258 0.354 9.8e-37
MGI|MGI:96412 1019 Ide "insulin degrading enzyme" 0.902 0.254 0.348 9.8e-37
TAIR|locus:2054346 AT2G41790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 209/288 (72%), Positives = 244/288 (84%)

Query:     1 DWILSAPKENLHLPAPNVFVPTDLSLKDTQEAK-FPVLLRKSSYSTLWYKPDTMFSTPKA 59
             +W+ SAP  +LHLPAPNVF+PTDLSLKD  + +  PVLLRK+ +S LWYKPDTMFS PKA
Sbjct:   473 EWVQSAPDVHLHLPAPNVFIPTDLSLKDADDKETVPVLLRKTPFSRLWYKPDTMFSKPKA 532

Query:    60 FVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVV 119
             +V + FNCP A SSP++ VLTDIFTRLL DYLNEYAYYAQVAGLYYG++ ++ GFE+T++
Sbjct:   533 YVKMDFNCPLAVSSPDAAVLTDIFTRLLMDYLNEYAYYAQVAGLYYGVSLSDNGFELTLL 592

Query:   120 GYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD 179
             GYNHKLRILLET+  KIA F+V+PDRF+VIKE VTKEY N KF QPY  AMYYCSLILQD
Sbjct:   593 GYNHKLRILLETVVGKIANFEVKPDRFAVIKETVTKEYQNYKFRQPYHQAMYYCSLILQD 652

Query:   180 QTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239
             QTWPWTEEL+VL HLEAED+AKFVPM+LSRTF+ECYIAGN+E+NEA S++++IEDV F  
Sbjct:   653 QTWPWTEELDVLSHLEAEDVAKFVPMLLSRTFIECYIAGNVENNEAESMVKHIEDVLFND 712

Query:   240 SNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287
               PIC+PLFPSQHLTNRVVKL +G  Y Y   G NPSDENS LVHYIQ
Sbjct:   713 PKPICRPLFPSQHLTNRVVKLGEGMKYFYHQDGSNPSDENSALVHYIQ 760
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2103523 AT3G57470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-85 ide "insulin-degrading enzyme" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P14735 IDE "Insulin-degrading enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC98 IDE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K02 IDE "Insulin-degrading enzyme" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|2861 Ide "insulin degrading enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000015933 AN8044 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ3 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:96412 Ide "insulin degrading enzyme" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22941PXM16_ARATH3, ., 4, ., 2, 4, ., -0.72561.00.2958yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 5e-47
PRK15101 961 PRK15101, PRK15101, protease3; Provisional 3e-11
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  167 bits (426), Expect = 5e-47
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 11/279 (3%)

Query: 11  LHLPAPNVFVPTDLSLKDTQEA-KFPVLLRKSSYSTLWYKPDTMFST-PKAFVNIYFNCP 68
           L LP PN F+P D+SL  +++   FP LL +     LWY  +  F+  PKA V++    P
Sbjct: 477 LSLPEPNPFIPDDVSLIKSEKKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSP 536

Query: 69  HASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRIL 128
           HAS SP ++VLT+++  L +D L++ +Y A +AGL + +     G ++T+ G+  +L  L
Sbjct: 537 HASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQL 596

Query: 129 LETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEEL 188
           L      +    V  DRF   K  +++E  N    +PY+ A+   + +LQ   W   E  
Sbjct: 597 LRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSREERR 656

Query: 189 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLF 248
             L  +  E+ A F   +L+   LE  + GN+   +A       E +  K       P  
Sbjct: 657 NALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADA---TNLAETLQKK------LPAI 707

Query: 249 PSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287
            S    N  V L KG   ++   G      N+ +++  Q
Sbjct: 708 GSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ 746

Length = 937
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
PRK15101 961 protease3; Provisional 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 99.64
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 99.6
PRK15101 961 protease3; Provisional 99.46
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 98.99
PTZ00432 1119 falcilysin; Provisional 98.9
KOG0960 467 consensus Mitochondrial processing peptidase, beta 98.89
KOG2067 472 consensus Mitochondrial processing peptidase, alph 98.31
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 98.2
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 97.8
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 97.74
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 97.61
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 97.4
KOG2067472 consensus Mitochondrial processing peptidase, alph 97.25
PTZ00432 1119 falcilysin; Provisional 96.86
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 96.76
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 96.46
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 96.39
KOG0960467 consensus Mitochondrial processing peptidase, beta 96.3
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 95.9
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 95.19
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 85.99
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 84.43
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-49  Score=378.04  Aligned_cols=285  Identities=41%  Similarity=0.747  Sum_probs=269.8

Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCccccCC--CCCCCCeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHH
Q 042270            1 DWILSAPKENLHLPAPNVFVPTDLSLKDT--QEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEV   78 (287)
Q Consensus         1 ~w~~~~~~~~l~LP~~N~fip~~f~~~~~--~~~~~P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~   78 (287)
                      +|.++.++++|+||+||.|||+||++++.  ....+|++|.+++..++||++|+.|+.||+.+.+.+.+|.+..++.+++
T Consensus       474 ~~~~~~~~~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~  553 (974)
T KOG0959|consen  474 EWENSHLNPELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSV  553 (974)
T ss_pred             HhhccCccccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHH
Confidence            47777888999999999999999999886  4577899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHh
Q 042270           79 LTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYH  158 (287)
Q Consensus        79 l~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~  158 (287)
                      ++.+|+.++.+.++|..|+|..||++++++.+..|+.++|+||++|++.+++.+++.+.++.+++++|+.+|+.+.++++
T Consensus       554 l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~  633 (974)
T KOG0959|consen  554 LSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELR  633 (974)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270          159 NNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK  238 (287)
Q Consensus       159 n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~  238 (287)
                      |...++|+.+|.+++..++.+..|+.++++++|+.++++|+..|...++++.+++++|+||+++++|.++++.+.+.++ 
T Consensus       634 n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l~-  712 (974)
T KOG0959|consen  634 NHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDILK-  712 (974)
T ss_pred             hhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhhh-
Confidence            9888889999999999999999999999999999999999999999999999999999999999999999999999993 


Q ss_pred             CCCCCCCCCCCCCcCccceEEeCCCceEEEecCCCCCCCCCeEEEEEEC
Q 042270          239 GSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ  287 (287)
Q Consensus       239 ~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ns~v~~y~Q  287 (287)
                      ...+.+.|+...+....+.++||.|.+++|+.. .|+.|+|||+.+|||
T Consensus       713 ~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q  760 (974)
T KOG0959|consen  713 SAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQ  760 (974)
T ss_pred             ccCCCCccccccccCcccceeccCCceEEEEcc-cccCCCCceEEEEEE
Confidence            333226677778889999999999999988877 788999999999998

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3cww_A 990 Crystal Structure Of Ide-Bradykinin Complex Length 1e-41
3qz2_A 990 The Structure Of Cysteine-Free Human Insulin Degrad 3e-41
2wby_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 3e-41
3hgz_A 969 Crystal Structure Of Human Insulin-Degrading Enzyme 3e-41
3e4z_A 990 Crystal Structure Of Human Insulin Degrading Enzyme 3e-41
3e4a_A 1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 3e-41
2jg4_A 990 Substrate-Free Ide Structure In Its Closed Conforma 2e-40
2g47_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 2e-40
3tuv_A 1019 Crystal Structure Of Insulysin With Bound Atp Lengt 7e-40
3p7o_A 1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 7e-40
3p7l_A 978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 7e-40
1q2l_A 939 Crystal Structure Of Pitrilysin Length = 939 5e-10
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 151/281 (53%), Gaps = 11/281 (3%)
Query: 2   WILSAPKENLHLPAPNVFVPTDLSLKDTQEAK--FPVLLRKSSYSTLWYKPDTMFSTPKA 59
           W  +A      LP  N F+PT+  +   + A   +P L++ ++ S LW+K D  F  PKA
Sbjct: 484 WQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKA 543
Query: 60  FVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVV 119
            +N  F  P A   P    +  ++  LL D LNEYAY A++AGL Y + +T  G  ++V 
Sbjct: 544 NLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVK 603
Query: 120 GYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD 179
           GYN K  ILL+ I +K+A F++   RF +IKE   +  +N +  QP+Q AMYY  L++ +
Sbjct: 604 GYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE 663
Query: 180 QTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239
             W   E  E L  +    L  F+P +LSR  +E  + GNI    A  I+Q +ED   + 
Sbjct: 664 VAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEH 723
Query: 240 SNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 273
           ++   +PL PSQ    R V+L ++G      +N V++N G+
Sbjct: 724 AH--TKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin Length = 939 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 6e-66
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 8e-57
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
 Score =  221 bits (563), Expect = 6e-66
 Identities = 100/289 (34%), Positives = 147/289 (50%), Gaps = 6/289 (2%)

Query: 1   DWILSAPKENLHLPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPK 58
            W  +A      LP  N F+PT+  +   +     +P L++ ++ S LW+K D  F  PK
Sbjct: 483 KWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPK 542

Query: 59  AFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTV 118
           A +N  F  P A   P    +  ++  LL D LNEYAY A++AGL Y + +T  G  ++V
Sbjct: 543 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602

Query: 119 VGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQ 178
            GYN K  ILL+ I +K+A F++   RF +IKE   +  +N +  QP+Q AMYY  L++ 
Sbjct: 603 KGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662

Query: 179 DQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238
           +  W   E  E L  +    L  F+P +LSR  +E  + GNI    A  I+Q +ED    
Sbjct: 663 EVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLI- 721

Query: 239 GSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287
             +   +PL PSQ    R V+L     +VY  +  N    NS +  Y Q
Sbjct: 722 -EHAHTKPLLPSQLAAYREVQLPDRGWFVYQQR--NEVHNNSGIEIYYQ 767
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 99.81
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 99.79
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 99.79
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 99.76
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 99.76
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 99.7
3eoq_A 406 Putative zinc protease; two similar domains of bet 99.7
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 99.68
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 99.65
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 99.6
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.58
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 99.58
3go9_A 492 Insulinase family protease; IDP00573, structural g 99.57
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 99.54
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.4
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.3
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.06
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 98.96
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.71
3eoq_A406 Putative zinc protease; two similar domains of bet 98.37
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 98.33
3gwb_A434 Peptidase M16 inactive domain family protein; pept 98.29
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.27
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 98.23
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 98.23
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.23
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 98.18
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 98.14
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 98.14
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 98.12
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 98.11
3go9_A492 Insulinase family protease; IDP00573, structural g 97.74
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
Probab=100.00  E-value=7.9e-33  Score=275.88  Aligned_cols=267  Identities=19%  Similarity=0.333  Sum_probs=232.4

Q ss_pred             CCCCCCCCCCCCCCCCccccCC-CCCCCCeEeecCCCceEEEeCCCccccc-ceEEEEEEeCCCCCCCHHHHHHHHHHHH
Q 042270            8 KENLHLPAPNVFVPTDLSLKDT-QEAKFPVLLRKSSYSTLWYKPDTMFSTP-KAFVNIYFNCPHASSSPESEVLTDIFTR   85 (287)
Q Consensus         8 ~~~l~LP~~N~fip~~f~~~~~-~~~~~P~~i~~~~~~~vw~~~d~~f~~P-k~~i~i~i~~~~~~~~~~~~~l~~l~~~   85 (287)
                      ...+++|.+|+|||++|++.+. .....|.++..++|++||+++++.|++| ++.|.+.+.+|....++.+.+++.|+..
T Consensus       472 ~~~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~  551 (939)
T 1q2l_A          472 DIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDY  551 (939)
T ss_dssp             TCCCCCCCCCTTCCCCCCCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHH
T ss_pred             cccccCCCCCcCCCcCcccccCcCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHH
Confidence            4579999999999999998765 4456799999999999999999999886 9999999999988888999999999999


Q ss_pred             HHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccCh
Q 042270           86 LLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQP  165 (287)
Q Consensus        86 ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p  165 (287)
                      ++.+++.+..|.+.++|++++++. .+|+.++++|++++++.+++.+.+.+.+|.+++++|+++|++++++++|...+.|
T Consensus       552 ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p  630 (939)
T 1q2l_A          552 LAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKA  630 (939)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCH
T ss_pred             HHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcCh
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999976669


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 042270          166 YQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQ  245 (287)
Q Consensus       166 ~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~  245 (287)
                      ..++...+..++++++|+..+.++.|+++|++|+.+|+++++++.+++++|+||+++++|+++++.+.+.++....    
T Consensus       631 ~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~----  706 (939)
T 1q2l_A          631 FEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGS----  706 (939)
T ss_dssp             HHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCS----
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCc----
Confidence            9999999999999888999999999999999999999999999999999999999999999999998888864321    


Q ss_pred             CCCCCCcCccceEEeCCCceEEEecCCCCCCCCCeEE-EEEEC
Q 042270          246 PLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCL-VHYIQ  287 (287)
Q Consensus       246 p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ns~v-~~y~Q  287 (287)
                           .....+...++.|..+.+...  .+ +.++++ ..|||
T Consensus       707 -----~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~  741 (939)
T 1q2l_A          707 -----EWCRNKDVVVDKKQSVIFEKA--GN-STDSALAAVFVP  741 (939)
T ss_dssp             -----CCCCCEEECCCSCEEEEEEEC--CS-SSCEEEEEEEEC
T ss_pred             -----cccccceEEeCCCceEEEecC--CC-CCCceeEEEEEe
Confidence                 111223334455555444443  22 345665 77775
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 5e-36
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score =  126 bits (317), Expect = 5e-36
 Identities = 44/230 (19%), Positives = 96/230 (41%), Gaps = 3/230 (1%)

Query: 17  NVFVPTDLSLKDTQE-AKFPVLLRKSSYSTLWYKPDTMF-STPKAFVNIYFNCPHASSSP 74
           N ++P D SL  +++    P L+   S   + Y P   F S PKA V++    P A  S 
Sbjct: 1   NPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSA 60

Query: 75  ESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQ 134
            ++V+  +   L    L++ +  A V G+ +   +   G  V   GY  +L  L + + +
Sbjct: 61  RNQVMFALNDYLAGLALDQLSNQASVGGISFST-NANNGLMVNANGYTQRLPQLFQALLE 119

Query: 135 KIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHL 194
               +    D+    K    +   + +  + ++ A+    ++ Q   +   E  ++LP +
Sbjct: 120 GYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI 179

Query: 195 EAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPIC 244
             +++  +   + S    E  + GN+   +A ++ + ++       +  C
Sbjct: 180 TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWC 229

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.77
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.74
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.73
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.71
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.71
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.66
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.56
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.1
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.93
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.81
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.77
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.66
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.5
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.24
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.18
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.82
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 94.74
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 85.29
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-38  Score=265.33  Aligned_cols=224  Identities=19%  Similarity=0.336  Sum_probs=212.4

Q ss_pred             CCCCCCCccccCC-CCCCCCeEeecCCCceEEEeCCCccc-ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh
Q 042270           17 NVFVPTDLSLKDT-QEAKFPVLLRKSSYSTLWYKPDTMFS-TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEY   94 (287)
Q Consensus        17 N~fip~~f~~~~~-~~~~~P~~i~~~~~~~vw~~~d~~f~-~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~   94 (287)
                      |||||+||++++. ...+.|+++..++|+++||++|+.|. .|++.+.+.++++...+++++.+++.|+..++.+.+.+.
T Consensus         1 N~~ip~~~~l~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~~P~~~i~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~e~   80 (229)
T d1q2la1           1 NPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL   80 (229)
T ss_dssp             CTTCCCCCCCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccCCCCcCCCCCEEEEeCCCeEEEEECCCccCCCCEEEEEEEEEecccccChhHHHHHHHHHHHHHhhhhhH
Confidence            9999999999887 55678999999999999999999986 699999999999999999999999999999999999999


Q ss_pred             hhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHH
Q 042270           95 AYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCS  174 (287)
Q Consensus        95 ~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~  174 (287)
                      .|.|..+|+++++.. ..|+++.++||+++++.+++.+++.+.++.+++++|+++|+++++++++...+.++.++...+.
T Consensus        81 ~~~a~~~g~~~~~~~-~~~~~i~~~~~s~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  159 (229)
T d1q2la1          81 SNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQ  159 (229)
T ss_dssp             HHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred             HHHHHhccccccccc-cceEEEEEEeehHHHHHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            999999999999975 5799999999999999999999999999999999999999999999999988878888888888


Q ss_pred             HhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCCCC
Q 042270          175 LILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN  241 (287)
Q Consensus       175 ~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~  241 (287)
                      .+...+.|+..+.+++|+++|++|+++|+++++++.+++++|+||+++++|+++++.+.+.|+.++.
T Consensus       160 ~~~~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~~i~Gn~~~~~a~~l~~~~~~~L~~~~~  226 (229)
T d1q2la1         160 MLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGS  226 (229)
T ss_dssp             HTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCS
T ss_pred             HhcccCCCcchhhHHHHhhhhHHHHHHHHHHhcCccCEEEEEEcCCCHHHHHHHHHHHHhhcCCCCC
Confidence            8888889999999999999999999999999999999999999999999999999999999997643
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure