Citrus Sinensis ID: 042277

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------90

MNGPEELKRSNSAFESSVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISRFEMSDLEKGSMKPVINCLLNLRAEYITGGDIRPLTSIITKSGSRQGDVSSPASLSPLFGEERRKVSSDSQFQRGLRSPVMSESSTALLHHVGHKFHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASLKDTIAKKDDEIERLQLLKDLKNVYPGVNSEKRGLNTF

ccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccEEEEcccccEEEcccccccccccEEEEccEEccccccHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEccccccccccccccHHHHHcccccccccccccccccEEEcccEEEEcccHHHHHHHHHHHHcccHHHHccccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

cccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEcHHHcccHHHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHEEccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccEEEEEEcccEEEEEccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHcEccccccccEcHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEccEEEEcccccccccccccccccccEEEEEEccccccEcccccEEEEccHHHHHHHHHHHHHHcccccccHHHHHHHcEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHccccccEEEEEEEEccEHHHHHHHHHHHHHHHcccccEccccHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccc

mngpeelkrsnsafessvNINSEVEAKQRALLIEWLNSilpnlnfpikaSDEELRACLIDGTVLCQILKrlkpasvdeanysynssmsrsGKIARFLTTLGKLgisrfemsdlekgsmkpVINCLLNLRaeyitggdirpltsiitksgsrqgdvsspaslsplfgeerrkvssdsqfqrglrspvmsesSTALLHHVGHKFHEVFQlkqgcyadlpAAKITEMMkstsldnaptqsLLSVVNGIldesvdrkngeipHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVreleansdskyQRWSRKESIYQSFMDLQHGAlrelrfssDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLkgnirvycrirpflpgqtkkqtTIEYIgengelifgnpskpgkdgqrmfkfnkvfgpdatqaevfsdtqplirsVLDGYNVCIFaygqtgsgktytmsgpsgpheedwgvnYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDlhtlgimstsqpnglavpdasmhpvtstEDVLELMDIGLKNRAIGatalnerssrshSVVTVHVrgkdlktgiplhgnlhlvdlagservdrseatGDRLKEAQHINKSLSALGDVIFALAqksphvpyrnskLTQVLQSSLGGQAKTLMFVQlnpdvnsyseSLSTLKFAERVSGvelgaarsskegrDVRELMEQVASLKDTIAKKDDEIERLQLLKDLknvypgvnsekrglntf

mngpeelkrsnsafessvniNSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRlkpasvdeanysynssmsrsgkIARFLTTLGKLGISRFEmsdlekgsmKPVINCLLNLRAEYITGGDIRPLTSIItksgsrqgdvsspaslsplfgeerrkvssdsqfqrglrspVMSESSTALLHHVGHKFHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDEsvdrkngeiphRVACLLRKVVQEIERRistqadhlrtqnnlfktreekyqSRIRVLEAlasgtgeeteIVMNQLQQIktekskleekkkleddDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVsrnkvreleansdskyqrwSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKaqkshaddlYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVycrirpflpgqtkkqtTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGatalnerssrshsvVTVHVRgkdlktgiplhgnlhlvdlagserVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKfaervsgvelgaarsskegrdvrELMEQVASlkdtiakkddEIERLQllkdlknvypgvnsekrglntf

MNGPEELKRSNSAFESSVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISRFEMSDLEKGSMKPVINCLLNLRAEYITGGDIRPLTSIITKSGSRQGDVSSPASLSPLFGEERRKVSSDSQFQRGLRSPVMSESSTALLHHVGHKFHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIktekskleekkkledddvaklMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNErssrshsvvtvhvrGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASLKDTIAKKDDEIERLQLLKDLKNVYPGVNSEKRGLNTF

***************************QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANY*********GKIARFLTTLGKLGISRFEMSDLEKGSMKPVINCLLNLRAEYITGGDIRPLTSII***********************************************ALLHHVGHKFHEVFQLKQGCYADLPAAKITE*************SLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRT**NLF*********RIRVLEA************************************************************AKKTYELRCLHMETEYKG***********L*HLL**************************IYQSFMDLQHGAL*********************ADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFG***********MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSG**************DWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMST*******************EDVLELMDIGLKNRAIGATAL********SVVTVHVRGKDLKTGIPLHGNLHLVDLA***********************SLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVN*******************************************************LQLLKDLK*V**************

************************EAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGIS******************LLNLR*****************************************************************************************************************************************************************************************************************************************************************************************************************QHGALRELR*******************DLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFL***************NGE****************FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTY*******PHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDV***********************GLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLK**IPLHGNLHLVDLAGSERVDR***TGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELG**********************************************************

**************ESSVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISRFEMSDLEKGSMKPVINCLLNLRAEYITGGDIRPLTSIIT************ASLSPLFG***********************SSTALLHHVGHKFHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRE************SRKESIYQSFMDLQHGALRELRFSSDSI**********HADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALN***********VHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELG***********RELMEQVASLKDTIAKKDDEIERLQLLKDLKNVYPGVNSEKRGLNTF

***************SSVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISRFEMSDLEKGSMKPVINCLLNLRAEYITGGDIRPLTS********************************************************HKFHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAG*******************INKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASLKDTIAKKDDEIERLQLL********************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MNGPEELKRSNSAFESSVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISRFEMSDLEKGSMKPVINCLLNLRAEYITGGDIRPLTSIITKSGSRQGDVSSPASLSPLFGEERRKVSSDSQFQRGLRSPVMSESSTALLHHVGHKFHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYELRCLHMETEYKGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDLKNVYPGVNSEKRGLNTF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		899	2.2.26 [Sep-21-2011]
O81635		987	Kinesin-4 OS=Arabidopsis	no	no	0.500	0.455	0.582	1e-146
P46864		745	Kinesin-2 OS=Arabidopsis	no	no	0.542	0.655	0.381	3e-85
P46875		754	Kinesin-3 OS=Arabidopsis	no	no	0.543	0.648	0.375	4e-85
F4JGP4		790	Kinesin-5 OS=Arabidopsis	no	no	0.385	0.439	0.463	6e-81
Q07970		793	Kinesin-1 OS=Arabidopsis	no	no	0.385	0.437	0.463	7e-81
Q9BVG8		833	Kinesin-like protein KIFC	no	no	0.374	0.404	0.460	2e-77
P79955		643	Carboxy-terminal kinesin	N/A	no	0.421	0.589	0.412	6e-77
O35231		824	Kinesin-like protein KIFC	no	no	0.373	0.407	0.459	6e-77
Q60443		622	Kinesin-like protein KIFC	no	no	0.540	0.781	0.344	2e-74
Q9BW19		673	Kinesin-like protein KIFC	no	no	0.395	0.528	0.435	1e-73

>sp\|O81635\|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2	Back alignment and function desciption

 Score =  520 bits (1339), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 272/467 (58%), Positives = 340/467 (72%), Gaps = 17/467 (3%)

Query: 409 ELEANS-----DSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADD 463
           E E NS     + K+QR + +    Q  +  Q   ++EL+ +  + K  +   Q  + +D
Sbjct: 297 EAEENSPPQVVEKKFQRTNFEHHEEQKILLNQQKHIQELKQTLYTTKAGMKLLQMKYQED 356

Query: 464 LYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQ-TKKQTTI 522
            + LG  L  LA AA  Y  VL ENR+L+N VQDLKGNIRVYCR+RPFLPGQ +   + +
Sbjct: 357 FFHLGKHLNGLAYAATGYKRVLEENRKLYNLVQDLKGNIRVYCRVRPFLPGQESGGLSAV 416

Query: 523 EYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIF 582
           E I E G +    PSK GK GQ+ F FNKVFGP ATQ EVFSD QPL+RSVLDGYNVCIF
Sbjct: 417 EDIDE-GTITIRVPSKYGKAGQKPFMFNKVFGPSATQEEVFSDMQPLVRSVLDGYNVCIF 475

Query: 583 AYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQ 642
           AYGQTGSGKT+TM+GP    EE  GVNYRAL DLF LS  R+ +  YE++VQM+EIYNEQ
Sbjct: 476 AYGQTGSGKTFTMTGPKELTEESLGVNYRALADLFLLSNQRKDTTSYEISVQMLEIYNEQ 535

Query: 643 VRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKN 702
           VRDLL  D              L I + S  NG+ VP+AS+ PV+ST+DV++LMD+G  N
Sbjct: 536 VRDLLAQDG---------QTKRLEIRNNSH-NGINVPEASLVPVSSTDDVIQLMDLGHMN 585

Query: 703 RAIGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLK 762
           RA+ +TA+N+RSSRSHS VTVHV+G+DL +G  LHG++HLVDLAGSERVD+SE TGDRLK
Sbjct: 586 RAVSSTAMNDRSSRSHSCVTVHVQGRDLTSGSILHGSMHLVDLAGSERVDKSEVTGDRLK 645

Query: 763 EAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSY 822
           EAQHINKSLSALGDVI +L+QK+ HVPYRNSKLTQ+LQ SLGG AKTLMFV ++P+ ++ 
Sbjct: 646 EAQHINKSLSALGDVISSLSQKTSHVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTL 705

Query: 823 SESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASLKDTIAKK 869
            E++STLKFAERV  VELGAAR +K+  +V+EL EQ+A+LK  + +K
Sbjct: 706 GETISTLKFAERVGSVELGAARVNKDNSEVKELKEQIANLKMALVRK 752

Microtubule-binding motor protein.
Arabidopsis thaliana (taxid: 3702)

>sp\|P46864\|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1	Back alignment and function description

>sp\|P46875\|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1	Back alignment and function description

>sp\|F4JGP4\|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1	Back alignment and function description

>sp\|Q07970\|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1	Back alignment and function description

>sp\|Q9BVG8\|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4	Back alignment and function description

>sp\|P79955\|CTK2_XENLA Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 SV=1	Back alignment and function description

>sp\|O35231\|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4	Back alignment and function description

>sp\|Q60443\|KIFC1_CRIGR Kinesin-like protein KIFC1 OS=Cricetulus griseus PE=2 SV=1	Back alignment and function description

>sp\|Q9BW19\|KIFC1_HUMAN Kinesin-like protein KIFC1 OS=Homo sapiens GN=KIFC1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		899
225455932		1088	PREDICTED: kinesin-4-like [Vitis vinifer	0.973	0.804	0.695	0.0
225426424		1101	PREDICTED: uncharacterized protein LOC10	0.948	0.774	0.660	0.0
297734204		954	unnamed protein product [Vitis vinifera]	0.907	0.855	0.666	0.0
224121316		847	predicted protein [Populus trichocarpa]	0.905	0.961	0.676	0.0
297742519		1071	unnamed protein product [Vitis vinifera]	0.943	0.791	0.650	0.0
255582741		892	kinesin heavy chain, putative [Ricinus c	0.833	0.839	0.704	0.0
224133056		909	predicted protein [Populus trichocarpa]	0.779	0.771	0.772	0.0
147815114		1742	hypothetical protein VITISV_000953 [Viti	0.894	0.461	0.617	0.0
222632270		1016	hypothetical protein OsJ_19246 [Oryza sa	0.931	0.823	0.616	0.0
218197856		1016	hypothetical protein OsI_22285 [Oryza sa	0.931	0.823	0.614	0.0

>gi\|225455932\|ref\|XP_002276223.1\| PREDICTED: kinesin-4-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1226 bits (3172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/889 (69%), Positives = 728/889 (81%), Gaps = 14/889 (1%)

Query: 14  FESSVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKP 73
           FE     N++ + K+RA++ EWLNS+LPNLN P+KAS EELRACLIDG VLC+ L RL+P
Sbjct: 27  FEPMATHNADDKDKKRAIVAEWLNSMLPNLNLPVKASVEELRACLIDGAVLCRFLNRLRP 86

Query: 74  ASVDEA-NYSYNSSMSRSGKIARFLTTLGKLGISRFEMSDLEKGSMKPVINCLLNLRAEY 132
            SV E  +Y ++S M R   + +FL  L  LG+  FE++DLEKGSMK V+ C+L L+A  
Sbjct: 87  GSVSEVRDYDHSSGM-RYENVKKFLEALDALGMPGFEIADLEKGSMKTVLECILTLKAHT 145

Query: 133 I--TGGDIRPLTSIITKSGSRQGDVSSPASLSPLFGEERRKVSSDSQFQRGLRSPVMSES 190
           I    G+  P +S  +KSG+    V  P+      GE+R+K  S+S+FQR LRSPV SE 
Sbjct: 146 IPTVCGNNFPFSSSFSKSGNIGPQVDDPSRGPTPCGEDRQKSFSESKFQRALRSPVKSEP 205

Query: 191 STALLHHVGHKFHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDESV 250
           S AL++HVGHKFHEVFQLKQG YAD+PAAK+TEMMKS SLDNAPTQSLLSVVNGILDESV
Sbjct: 206 SAALIYHVGHKFHEVFQLKQGRYADIPAAKLTEMMKSNSLDNAPTQSLLSVVNGILDESV 265

Query: 251 DRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASG 310
           +RKN EIPHRVACLLRKVVQEIERRISTQA+HLRTQNNLFK+REEKYQSRIRVLE LA+G
Sbjct: 266 ERKNEEIPHRVACLLRKVVQEIERRISTQAEHLRTQNNLFKSREEKYQSRIRVLETLATG 325

Query: 311 TGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKT 370
           T +E +IV+N LQQIKT+K+ +E+KKKLE+D +A+L KEKDQ  +E  ALKQELE+A+KT
Sbjct: 326 TNDENQIVLNHLQQIKTKKANVEDKKKLEED-MARLNKEKDQNNIEITALKQELEIARKT 384

Query: 371 YELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQS 430
           YE     ME +  G K+ FE+R +ELE LL  SRNK+ +LEA S  + QRW +KE  Y  
Sbjct: 385 YEEHFSEMEKQGMGDKAEFEKRSRELEQLLADSRNKINKLEAYSGLEGQRWDKKEQSYLR 444

Query: 431 FMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRR 490
            ++    AL+ LR +S+SIK+E+ + QKS+++D  CLGV+LKAL  A+ENYHAVLAENRR
Sbjct: 445 LVNFLFSALQGLRSTSESIKKEVLETQKSYSEDFKCLGVKLKALVDASENYHAVLAENRR 504

Query: 491 LFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFN 550
           L+NEVQDLKGNIRVYCRIRPFL GQ  KQTTIEYIGE+GEL   NPSK GKD  R+FKFN
Sbjct: 505 LYNEVQDLKGNIRVYCRIRPFLRGQNGKQTTIEYIGEDGELGIVNPSKQGKDSHRLFKFN 564

Query: 551 KVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNY 610
           KV+GP ATQAEVFSDTQPL+RSVLDGYNVCIFAYGQTGSGKTYTM+GP+   +E+WGVNY
Sbjct: 565 KVYGPAATQAEVFSDTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMTGPNAASKEEWGVNY 624

Query: 611 RALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMST 670
           RAL+DLF ++Q+RRSS MYE+ VQMVEIYNEQVRDLL++D              LGI++T
Sbjct: 625 RALSDLFEITQSRRSSFMYEIGVQMVEIYNEQVRDLLSSDS---------SQKKLGILTT 675

Query: 671 SQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDL 730
           SQP+GLAVPDA+M PV ST DV+ELMDIG KNR++GATA+NERSSRSHS+VT+H  G DL
Sbjct: 676 SQPHGLAVPDATMLPVKSTSDVMELMDIGQKNRSVGATAMNERSSRSHSIVTIHAWGTDL 735

Query: 731 KTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPY 790
           KTG  L G+LHLVDLAGSERVDRSE TG+RL+EAQHINKSLSALGDVIFALAQKS HVPY
Sbjct: 736 KTGASLRGSLHLVDLAGSERVDRSEVTGERLREAQHINKSLSALGDVIFALAQKSSHVPY 795

Query: 791 RNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGR 850
           RNSKLTQVLQSSLGGQAKTLMFVQLNPDVNS+SE+ STLKFAERVSGVELGAARSSKEGR
Sbjct: 796 RNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSFSETASTLKFAERVSGVELGAARSSKEGR 855

Query: 851 DVRELMEQVASLKDTIAKKDDEIERLQLLKDLKNVYPGVNSEKRGLNTF 899
           DV+ELM+QVASLKDTIAKKD+EIERLQLLKDLKNV+PG+N E+    +F
Sbjct: 856 DVKELMDQVASLKDTIAKKDEEIERLQLLKDLKNVHPGLNCERSVTGSF 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225426424\|ref\|XP_002274169.1\| PREDICTED: uncharacterized protein LOC100256435 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297734204\|emb\|CBI15451.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224121316\|ref\|XP_002318552.1\| predicted protein [Populus trichocarpa] gi\|222859225\|gb\|EEE96772.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297742519\|emb\|CBI34668.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255582741\|ref\|XP_002532147.1\| kinesin heavy chain, putative [Ricinus communis] gi\|223528157\|gb\|EEF30221.1\| kinesin heavy chain, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224133056\|ref\|XP_002321471.1\| predicted protein [Populus trichocarpa] gi\|222868467\|gb\|EEF05598.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147815114\|emb\|CAN65659.1\| hypothetical protein VITISV_000953 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|222632270\|gb\|EEE64402.1\| hypothetical protein OsJ_19246 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|218197856\|gb\|EEC80283.1\| hypothetical protein OsI_22285 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		899
TAIR\|locus:2026639		1071	AT1G63640 [Arabidopsis thalian	0.757	0.635	0.606	2.6e-212
TAIR\|locus:2155095		961	AT5G41310 [Arabidopsis thalian	0.333	0.312	0.592	1.1e-185
TAIR\|locus:2027854		1025	AT1G73860 [Arabidopsis thalian	0.577	0.506	0.666	1e-180
TAIR\|locus:2014129		1140	AT1G18410 [Arabidopsis thalian	0.330	0.260	0.574	1.4e-172
TAIR\|locus:2061992		983	AT2G47500 [Arabidopsis thalian	0.591	0.541	0.498	3.5e-141
TAIR\|locus:2101645		1087	KP1 "kinesin-like protein 1" [	0.483	0.400	0.578	3.5e-139
TAIR\|locus:2148543		987	ATK4 "kinesin 4" [Arabidopsis	0.500	0.455	0.556	1.7e-137
TAIR\|locus:2195316		1010	AT1G09170 [Arabidopsis thalian	0.262	0.233	0.538	3.8e-130
TAIR\|locus:2076289		922	AT3G10310 [Arabidopsis thalian	0.232	0.226	0.573	4.6e-115
TAIR\|locus:2136437		745	ATK2 "kinesin 2" [Arabidopsis	0.538	0.649	0.374	9.6e-73

TAIR\|locus:2026639 AT1G63640 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2052 (727.4 bits), Expect = 2.6e-212, P = 2.6e-212
 Identities = 423/697 (60%), Positives = 523/697 (75%)

Query:   202 FHEVFQLKQGCYADLPAAKITEMMKSTSLDNAPTQSLLSVVNGILDESVDRKNGEIPHRV 261
             F + FQ K+G   D+  AKI++++KS SL NAPT+SL  +++ +LDES+ + NG + H +
Sbjct:   173 FTDGFQSKEGSEIDMSDAKISDLLKSNSLRNAPTRSLFDMLDKLLDESMTKMNGHVSHAM 232

Query:   262 ACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQ 321
             A LL  +VQ IE+RIS QAD+L+ QN LF+ REEKY+SRI+VLE+LA+GT +E EIV N 
Sbjct:   233 ASLLSALVQVIEQRISNQADNLKNQNILFRVREEKYRSRIKVLESLAAGTTKENEIVTNC 292

Query:   322 LQQIXXXXXXXXXXXXXXXXXXXXXMKEKDQQMLENLALKQELEMAKKTYELRCLHMETE 381
             ++ I                      KEK++   E   LKQEL++ K+T+E +CL +E +
Sbjct:   293 MEHIKLEKTRIEEKERSEEKDVVRLRKEKERSDAEIRQLKQELKLVKETHENQCLELEAK 352

Query:   382 YKGAKSGFEERIKELE-HLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALR 440
              +  +   E+++K+ E H++  SR KV+ELE    SK QRW +KE IYQ+F+D   GAL+
Sbjct:   353 AQKTRDELEKKLKDAELHVVDSSR-KVKELEKLCQSKSQRWEKKECIYQNFIDNHSGALQ 411

Query:   441 ELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKG 500
             EL  +S SIK E+ + Q+ + +DL   G++LK +A AA+NYH VL ENRRL+NEVQ+LKG
Sbjct:   412 ELSATSLSIKHEVVRTQRKYFEDLNYYGLKLKGVADAAKNYHVVLEENRRLYNEVQELKG 471

Query:   501 NIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQA 560
             NIRVYCRIRPFLPGQ  +QTTIEYIGE GEL+  NP K GKD  R+FKFNKVF   ATQ 
Sbjct:   472 NIRVYCRIRPFLPGQNSRQTTIEYIGETGELVVANPFKQGKDTHRLFKFNKVFDQAATQE 531

Query:   561 EVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLS 620
             EVF DT+PLIRS+LDGYNVCIFAYGQTGSGKTYTMSGPS   +EDWGVNYRALNDLF L+
Sbjct:   532 EVFLDTRPLIRSILDGYNVCIFAYGQTGSGKTYTMSGPSITSKEDWGVNYRALNDLFLLT 591

Query:   621 QNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPD 680
             Q+R++++MYEV VQMVEIYNEQVRD+L++               LGI +T+ PNGLAVPD
Sbjct:   592 QSRQNTVMYEVGVQMVEIYNEQVRDILSDGG---------SSRRLGIWNTALPNGLAVPD 642

Query:   681 ASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKTGIPLHGNL 740
             ASMH V STEDVLELM+IGL NR +GATALNE              G D++T   L G+L
Sbjct:   643 ASMHCVRSTEDVLELMNIGLMNRTVGATALNERSSRSHCVLSVHVRGVDVETDSILRGSL 702

Query:   741 HLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQ 800
             HLVDLAGSERVDRSEATG+RLKEAQHINKSLSALGDVIFALA K+PHVPYRNSKLTQVLQ
Sbjct:   703 HLVDLAGSERVDRSEATGERLKEAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQ 762

Query:   801 SSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVA 860
             SSLGGQAKTLMFVQ+NPD +SY+E++STLKFAERVSGVELGAA+SSKEGRDVR+LMEQV+
Sbjct:   763 SSLGGQAKTLMFVQVNPDGDSYAETVSTLKFAERVSGVELGAAKSSKEGRDVRQLMEQVS 822

Query:   861 SLKDTIAKKDDEIERLQLLKDLKNVYPGVNSEKRGLN 897
             +LKD IAKKD+E++  Q +K   N      S KRGL+
Sbjct:   823 NLKDVIAKKDEELQNFQKVKG-NNA----TSLKRGLS 854

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR\|locus:2155095 AT5G41310 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027854 AT1G73860 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2195316 AT1G09170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076289 AT3G10310 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2136437 ATK2 "kinesin 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		899
cd01366		329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	1e-158
smart00129		335	smart00129, KISc, Kinesin motor, catalytic domain	1e-138
pfam00225		326	pfam00225, Kinesin, Kinesin motor domain	1e-130
cd00106		328	cd00106, KISc, Kinesin motor domain	1e-124
cd01369		325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	3e-97
cd01371		333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	2e-93
cd01372		341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	8e-89
cd01370		338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	2e-88
cd01365		356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	1e-84
cd01364		352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	8e-81
cd01374		321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	1e-80
cd01375		334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	2e-77
cd01373		337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	1e-72
cd01367		322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	2e-72
cd01376		319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	5e-70
cd01368		345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	3e-68
COG5059		568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	4e-65
PLN03188		1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	9e-52
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	6e-42
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	2e-13
cd00014		107	cd00014, CH, Calponin homology domain; actin-bindi	2e-09
COG5059		568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	2e-08
smart00033		101	smart00033, CH, Calponin homology domain	8e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
pfam13851		201	pfam13851, GAS, Growth-arrest specific micro-tubul	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.004
pfam00307		104	pfam00307, CH, Calponin homology (CH) domain	0.004

>gnl\|CDD\|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

 Score =  466 bits (1202), Expect = e-158
 Identities = 175/345 (50%), Positives = 227/345 (65%), Gaps = 18/345 (5%)

Query: 499 KGNIRVYCRIRPFLPG-QTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDA 557
           KGNIRV+CR+RP LP   T+  + I +  E+G  I    SK     ++ F F++VF PDA
Sbjct: 1   KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTI--ELSKG-TGKKKSFSFDRVFDPDA 57

Query: 558 TQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLF 617
           +Q +VF +  PL++S LDGYNVCIFAYGQTGSGKTYTM GP     E+ G+  RAL  LF
Sbjct: 58  SQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGP----PENPGIIPRALEQLF 113

Query: 618 NLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGL 676
           N ++  +     Y +   M+EIYNE +RDLL                 L I   S+    
Sbjct: 114 NTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK--------KLEIKHDSK-GET 164

Query: 677 AVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPL 736
            V + +  PV+S E+V  L+++G KNR++ +T +NE SSRSH+V  + +RG +L+TG   
Sbjct: 165 YVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQT 224

Query: 737 HGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLT 796
            G L+LVDLAGSER+ +S ATGDRLKEAQ INKSLSALGDVI AL  K  HVPYRNSKLT
Sbjct: 225 RGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLT 284

Query: 797 QVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELG 841
            +LQ SLGG +KTLMFV ++P  ++ SE+L +L+FA RV  VELG
Sbjct: 285 YLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl\|CDD\|214526 smart00129, KISc, Kinesin motor, catalytic domain	Back alignment and domain information

>gnl\|CDD\|215803 pfam00225, Kinesin, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238054 cd00106, KISc, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>gnl\|CDD\|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>gnl\|CDD\|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

>gnl\|CDD\|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>gnl\|CDD\|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>gnl\|CDD\|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>gnl\|CDD\|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>gnl\|CDD\|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>gnl\|CDD\|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>gnl\|CDD\|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group	Back alignment and domain information

>gnl\|CDD\|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>gnl\|CDD\|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>gnl\|CDD\|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)	Back alignment and domain information

>gnl\|CDD\|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|214479 smart00033, CH, Calponin homology domain	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|215849 pfam00307, CH, Calponin homology (CH) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		899
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	100.0
KOG4280		574	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0245		1221	consensus Kinesin-like protein [Cytoskeleton]	100.0
PLN03188		1320	kinesin-12 family protein; Provisional	100.0
cd01370		338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01373		337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
KOG0240		607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	100.0
KOG0242		675	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01368		345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01365		356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01367		322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01371		333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01364		352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01376		319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01369		325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01366		329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
cd01374		321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01372		341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
KOG0241		1714	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01375		334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
cd00106		328	KISc Kinesin motor domain. This catalytic (head) d	100.0
smart00129		335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
PF00225		335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
KOG0247		809	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0246		676	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0244		913	consensus Kinesin-like protein [Cytoskeleton]	100.0
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363		186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
KOG2046		193	consensus Calponin [Cytoskeleton]	99.9
COG5199		178	SCP1 Calponin [Cytoskeleton]	99.67
cd00014		107	CH Calponin homology domain; actin-binding domain	99.61
smart00033		103	CH Calponin homology domain. Actin binding domains	99.46
COG5261		1054	IQG1 Protein involved in regulation of cellular mo	99.4
KOG2128		1401	consensus Ras GTPase-activating protein family - I	99.38
PF00307		108	CH: Calponin homology (CH) domain; InterPro: IPR00	99.33
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	99.02
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
KOG2996		865	consensus Rho guanine nucleotide exchange factor V	98.91
KOG0046		627	consensus Ca2+-binding actin-bundling protein (fim	97.53
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.18
PF11971		85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	96.82
PF06395		89	CDC24: CDC24 Calponin; InterPro: IPR010481 This is	96.59
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.38
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	96.29
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	96.16
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	96.11
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.08
PHA02562		562	46 endonuclease subunit; Provisional	96.04
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	95.93
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	95.91
COG4372		499	Uncharacterized protein conserved in bacteria with	95.91
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.84
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	95.82
KOG0996		1293	consensus Structural maintenance of chromosome pro	95.77
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	95.7
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.69
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.6
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	95.58
KOG0971		1243	consensus Microtubule-associated protein dynactin	95.54
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	95.53
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	95.5
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.47
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	95.41
KOG0971		1243	consensus Microtubule-associated protein dynactin	95.19
PRK03918		880	chromosome segregation protein; Provisional	95.12
KOG0996		1293	consensus Structural maintenance of chromosome pro	95.12
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	95.04
KOG1103		561	consensus Predicted coiled-coil protein [Function	94.81
PRK02224		880	chromosome segregation protein; Provisional	94.74
PRK11637		428	AmiB activator; Provisional	94.6
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.6
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	94.6
KOG1937		521	consensus Uncharacterized conserved protein [Funct	94.6
PRK02224		880	chromosome segregation protein; Provisional	94.54
PF10212		518	TTKRSYEDQ: Predicted coiled-coil domain-containing	94.37
PRK11637		428	AmiB activator; Provisional	94.23
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	94.22
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	94.2
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.16
KOG4673		961	consensus Transcription factor TMF, TATA element m	94.13
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	94.0
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	93.96
PLN03188		1320	kinesin-12 family protein; Provisional	93.96
COG5185		622	HEC1 Protein involved in chromosome segregation, i	93.85
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	93.85
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	93.79
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	93.77
PF14988		206	DUF4515: Domain of unknown function (DUF4515)	93.7
KOG0964		1200	consensus Structural maintenance of chromosome pro	93.67
KOG0933		1174	consensus Structural maintenance of chromosome pro	93.59
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	93.46
KOG0963		629	consensus Transcription factor/CCAAT displacement	93.37
KOG0933		1174	consensus Structural maintenance of chromosome pro	93.25
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	93.23
KOG4673		961	consensus Transcription factor TMF, TATA element m	93.12
PRK04863		1486	mukB cell division protein MukB; Provisional	92.96
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.82
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	92.8
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	92.71
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.71
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	92.7
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	92.49
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	92.46
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.31
PHA02562		562	46 endonuclease subunit; Provisional	92.22
PRK03918		880	chromosome segregation protein; Provisional	92.16
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	91.96
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.93
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	91.9
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	91.79
PRK09039		343	hypothetical protein; Validated	91.66
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	91.58
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	91.48
PRK04778		569	septation ring formation regulator EzrA; Provision	91.24
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	91.16
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	90.62
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	90.49
PRK06620		214	hypothetical protein; Validated	90.27
PF14662		193	CCDC155: Coiled-coil region of CCDC155	90.22
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	90.15
PRK06893		229	DNA replication initiation factor; Validated	90.09
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	89.93
PRK10361		475	DNA recombination protein RmuC; Provisional	89.84
KOG0018		1141	consensus Structural maintenance of chromosome pro	89.81
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	89.78
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.76
KOG0046		627	consensus Ca2+-binding actin-bundling protein (fim	89.51
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	89.31
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.0
KOG0240		607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	88.97
PRK14086		617	dnaA chromosomal replication initiation protein; P	88.67
PRK01156		895	chromosome segregation protein; Provisional	88.49
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	88.45
PRK08084		235	DNA replication initiation factor; Provisional	88.44
PRK12377		248	putative replication protein; Provisional	88.43
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.32
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	88.1
PF06818		202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.0
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	88.0
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	87.84
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	87.77
PRK03992		389	proteasome-activating nucleotidase; Provisional	87.75
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.63
PF14988		206	DUF4515: Domain of unknown function (DUF4515)	87.41
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	87.34
KOG0964		1200	consensus Structural maintenance of chromosome pro	87.09
PRK04863		1486	mukB cell division protein MukB; Provisional	86.96
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	86.81
PRK05642		234	DNA replication initiation factor; Validated	86.75
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	86.74
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.53
PRK09039		343	hypothetical protein; Validated	86.5
PRK08116		268	hypothetical protein; Validated	86.43
PRK14088		440	dnaA chromosomal replication initiation protein; P	86.12
KOG4809		654	consensus Rab6 GTPase-interacting protein involved	86.04
PRK07952		244	DNA replication protein DnaC; Validated	85.98
COG5185		622	HEC1 Protein involved in chromosome segregation, i	85.97
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	85.83
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	85.74
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	85.4
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	85.23
PRK01156		895	chromosome segregation protein; Provisional	85.16
PRK06835		329	DNA replication protein DnaC; Validated	85.09
PF06785		401	UPF0242: Uncharacterised protein family (UPF0242);	84.96
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	84.94
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	84.74
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	84.71
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.54
TIGR01242		364	26Sp45 26S proteasome subunit P45 family. Many pro	84.47
PRK00149		450	dnaA chromosomal replication initiation protein; R	84.46
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	84.41
PRK14087		450	dnaA chromosomal replication initiation protein; P	84.32
PRK08903		227	DnaA regulatory inactivator Hda; Validated	84.28
PRK09087		226	hypothetical protein; Validated	84.25
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	83.74
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	83.34
PTZ00454		398	26S protease regulatory subunit 6B-like protein; P	83.17
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	83.0
PF10186		302	Atg14: UV radiation resistance protein and autopha	82.66
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	82.66
COG1484		254	DnaC DNA replication protein [DNA replication, rec	82.6
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	82.57
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	82.4
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	82.33
PF15035		182	Rootletin: Ciliary rootlet component, centrosome c	82.11
PRK10865		857	protein disaggregation chaperone; Provisional	82.08
COG5069		612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	82.0
PF14662		193	CCDC155: Coiled-coil region of CCDC155	82.0
TIGR03545		555	conserved hypothetical protein TIGR03545. This mod	81.87
KOG0963		629	consensus Transcription factor/CCAAT displacement	81.72
PF09744		158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	81.57
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	81.48
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	81.3
PRK08727		233	hypothetical protein; Validated	81.01
COG0593		408	DnaA ATPase involved in DNA replication initiation	80.66
KOG4603		201	consensus TBP-1 interacting protein [Signal transd	80.59
COG4372		499	Uncharacterized protein conserved in bacteria with	80.52
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	80.29
COG4942		420	Membrane-bound metallopeptidase [Cell division and	80.18

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=4.6e-100  Score=899.15  Aligned_cols=596  Identities=38%  Similarity=0.515  Sum_probs=516.4

Q ss_pred             CCCCCCCccHHHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhh
Q 042277          229 SLDNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALA  308 (899)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  308 (899)
                      ...++|...+..+...+++....++...+.......++.+..++..++..+...+.+.+..++..++.+.+.+.++.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~  148 (670)
T KOG0239|consen   69 EGSNQPGGLLARLFKELIDLANSDKTSNVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELA  148 (670)
T ss_pred             hhhcCcchhHHHhhhhcccccccCCCchhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHH
Confidence            34578888888888888888888887766677789999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhHHHHHHHHHHHhhhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Q 042277          309 SGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSG  388 (899)
Q Consensus       309 ~~~~~~~~~~~~~l~~~~~e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~  388 (899)
                      ..+..........            ..++..+ ......++....+.++..+.++|+..+..++..+.+++. ....+..
T Consensus       149 ~~~~~~~~~~~~~------------~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~-~~~~~~~  214 (670)
T KOG0239|consen  149 QENRGLYLDLSKV------------TPENSLS-LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS-AQEERRV  214 (670)
T ss_pred             hhhcccccccccc------------chhhhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHH
Confidence            8777543222110            0000111 334556777888999999999999999999999988887 4444444


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042277          389 FEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLG  468 (899)
Q Consensus       389 le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~  468 (899)
                      |++...    ...+.+..+++++.....           ....++.++..+++|+..+..++.++...++.+.+.+..++
T Consensus       215 l~~~~~----~~~~~~~~~~~l~~~~~~-----------~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  279 (670)
T KOG0239|consen  215 LADSLG----NYADLRRNIKPLEGLEST-----------IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESN  279 (670)
T ss_pred             HHHHhh----hhhhHHHhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433    233455555555443333           23335666777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHH---HHHhhhhhhhhhcCCCEEEEEecCCCCCCCCCC-CceEEEEccCCeEEecCCCCCCCCCc
Q 042277          469 VRLKALAGAAENYHAVL---AENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKK-QTTIEYIGENGELIFGNPSKPGKDGQ  544 (899)
Q Consensus       469 ~~l~~l~~~~~~y~~~~---~e~R~l~N~iqelkGnIrV~~RVRP~~~~E~~~-~~~v~~~~~~~~v~i~~p~~~~~~~~  544 (899)
                      ..+..|.....+|+...   .+||+|||+|+||||||||||||||+++.+... ...+...++.+++.+..|....+...
T Consensus       280 ~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (670)
T KOG0239|consen  280 TLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEP  359 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCcc
Confidence            99999999999999888   899999999999999999999999999998874 45566665557789999887777767


Q ss_pred             eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccC
Q 042277          545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRR  624 (899)
Q Consensus       545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~  624 (899)
                      +.|.||+||+|.++|++||.++.|+|++||||||+||||||||||||||||.||   +++++|||||++++||..++...
T Consensus       360 ~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~  436 (670)
T KOG0239|consen  360 QSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLK  436 (670)
T ss_pred             ccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhc
Confidence            789999999999999999999999999999999999999999999999999997   46789999999999999999988


Q ss_pred             CCeeEEEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhccc
Q 042277          625 SSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRA  704 (899)
Q Consensus       625 ~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~  704 (899)
                      .+|.|.+.++|+|||||+|+|||.+...          .....+..+..++++|++++.++|.+.+++..+++.|.++|+
T Consensus       437 ~g~~y~~~~s~~EIYNe~i~DlL~~~~~----------~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRs  506 (670)
T KOG0239|consen  437 SGWKYDKTVSMLEIYNEAIRDLLSDESY----------VGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRS  506 (670)
T ss_pred             cCceEEeeeehhHHHHHHHHHhcccccc----------ccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcccc
Confidence            8999999999999999999999987641          112234556667899999999999999999999999999999


Q ss_pred             ccccCCCCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC
Q 042277          705 IGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK  784 (899)
Q Consensus       705 ~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k  784 (899)
                      +++|.+|++|||||+||+|+|.+.+..++....|+|+|||||||||+++++++|+|++|+++||+||++||+||.||+++
T Consensus       507 v~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k  586 (670)
T KOG0239|consen  507 VASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK  586 (670)
T ss_pred             ccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCcchhhHHHHHHHHHHHHH
Q 042277          785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASLKD  864 (899)
Q Consensus       785 ~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~~~~~~~L~eqv~~Lk~  864 (899)
                      ++||||||||||+||||||||++||+|||+|||...++.||+++|+||+||+.+.+|+++......+...++.....++.
T Consensus       587 ~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~  666 (670)
T KOG0239|consen  587 RSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKL  666 (670)
T ss_pred             CCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999998888888888888777766


Q ss_pred             HH
Q 042277          865 TI  866 (899)
Q Consensus       865 ~i  866 (899)
                      .+
T Consensus       667 ~~  668 (670)
T KOG0239|consen  667 ST  668 (670)
T ss_pred             hh
Confidence            54

>KOG4280 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PLN03188 kinesin-12 family protein; Provisional	Back alignment and domain information

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	Back alignment and domain information

>KOG0242 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group	Back alignment and domain information

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>cd00106 KISc Kinesin motor domain	Back alignment and domain information

>smart00129 KISc Kinesin motor, catalytic domain	Back alignment and domain information

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport	Back alignment and domain information

>KOG0247 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0246 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01363 Motor_domain Myosin and Kinesin motor domain	Back alignment and domain information

>KOG2046 consensus Calponin [Cytoskeleton]	Back alignment and domain information

>COG5199 SCP1 Calponin [Cytoskeleton]	Back alignment and domain information

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)	Back alignment and domain information

>smart00033 CH Calponin homology domain	Back alignment and domain information

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]	Back alignment and domain information

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]	Back alignment and domain information

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins	Back alignment and domain information

>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PLN03188 kinesin-12 family protein; Provisional	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF14988 DUF4515: Domain of unknown function (DUF4515)	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PRK10361 DNA recombination protein RmuC; Provisional	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF14988 DUF4515: Domain of unknown function (DUF4515)	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>TIGR01242 26Sp45 26S proteasome subunit P45 family	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>TIGR03545 conserved hypothetical protein TIGR03545	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		899
2h58_A		330	Crystal Structure Of The Kifc3 Motor Domain In Comp		2e-68
3h4s_A		386	Structure Of The Complex Of A Mitotic Kinesin With		4e-63
2ncd_A		420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		1e-61
1cz7_A		406	The Crystal Structure Of A Minus-End Directed Micro		2e-61
1n6m_A		409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		1e-60
2rep_A		376	Crystal Structure Of The Motor Domain Of Human Kine		2e-60
3u06_A		412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		2e-60
3l1c_A		383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		2e-60
1f9t_A		358	Crystal Structures Of Kinesin Mutants Reveal A Sign		8e-60
3t0q_A		349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		2e-59
1sdm_A		369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		9e-59
4etp_A		403	C-Terminal Motor And Motor Homology Domain Of Kar3v		2e-58
1f9v_A		347	Crystal Structures Of Mutants Reveal A Signalling P		1e-56
4gkr_A		371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		5e-56
3kar_A		346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		6e-56
1f9w_A		347	Crystal Structures Of Mutants Reveal A Signalling P		9e-56
1f9u_A		347	Crystal Structures Of Mutants Reveal A Signalling P		1e-55
3b6u_A		372	Crystal Structure Of The Motor Domain Of Human Kine		8e-51
2y5w_A		365	Crystal Structure Of Drosophila Melanogaster Kinesi		3e-49
1goj_A		355	Structure Of A Fast Kinesin: Implications For Atpas		1e-48
1mkj_A		349	Human Kinesin Motor Domain With Docked Neck Linker		3e-48
1bg2_A		325	Human Ubiquitous Kinesin Motor Domain Length = 325		3e-48
2vvg_A		350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		4e-48
4h1g_A		715	Structure Of Candida Albicans Kar3 Motor Domain Fus		5e-48
4atx_C		340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		8e-48
3lre_A		355	Crystal Structure Analysis Of Human Kinesin-8 Motor		2e-45
2wbe_C		373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		7e-45
3b6v_A		395	Crystal Structure Of The Motor Domain Of Human Kine		1e-44
4aqv_C		373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		7e-44
1i5s_A		367	Crystal Structure Of The Kif1a Motor Domain Complex		1e-43
1x88_A		359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		1e-43
3hqd_A		369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		2e-43
4a1z_A		368	Eg5-1 Length = 368		2e-43
1ii6_A		368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		2e-43
4a28_A		368	Eg5-2 Length = 368		2e-43
1q0b_A		367	Crystal Structure Of The Motor Protein Ksp In Compl		2e-43
1ia0_K		394	Kif1a Head-Microtubule Complex Structure In Atp-For		2e-43
1i6i_A		366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-43
3zcw_A		348	Eg5 - New Allosteric Binding Site Length = 348		2e-43
4ap0_A		370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		2e-43
1vfv_A		366	Crystal Structure Of The Kif1a Motor Domain Complex		3e-43
3gbj_A		354	Crystal Structure Of The Motor Domain Of Kinesin Ki		2e-42
4a14_A		344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		6e-41
2xt3_A		344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		3e-38
3bfn_A		388	Crystal Structure Of The Motor Domain Of Human Kine		8e-37
2owm_A		443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		3e-36
1t5c_A		349	Crystal Structure Of The Motor Domain Of Human Kine		4e-36
3nwn_A		359	Crystal Structure Of The Human Kif9 Motor Domain In		2e-34
1v8j_A		410	The Crystal Structure Of The Minimal Functional Dom		4e-34
3edl_D		331	Kinesin13-Microtubule Ring Complex Length = 331		8e-34
2heh_A		387	Crystal Structure Of The Kif2c Motor Domain (Casp T		7e-32
2gry_A		420	Crystal Structure Of The Human Kif2 Motor Domain In		8e-31
3pxn_A		344	Crystal Structure Of The Drosophila Kinesin Family		4e-27
3dc4_A		344	Crystal Structure Of The Drosophila Kinesin Family		4e-27
1ry6_A		360	Crystal Structure Of Internal Kinesin Motor Domain		6e-24
2kin_A		238	Kinesin (Monomeric) From Rattus Norvegicus Length =		8e-22
2kin_B		100	Kinesin (Monomeric) From Rattus Norvegicus Length =		2e-13
3kin_B		117	Kinesin (Dimeric) From Rattus Norvegicus Length = 1		5e-13

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330