Citrus Sinensis ID: 042295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKFTAATAS
Secondary Structure (PSIPRED)
ccEEEEccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccccccccEEEEEcEEEEccEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccHHHHHHHHHHHcccccccEEEEEEccccccccEEEcccccccEEccccccHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEEEccccHccHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHccccHHHccHHHHHHcccccccccEEEEcccEEccEcHHEEEEcccccc
Coil and Loop (DISEMBL)
metffishgsptlpidesLQVRHFLKAWKEQvflqkpnsiLVISAhwetdvptvnvvrqndtiydfygfpeqlyklkypapgapDLAKRVKELLRTsgfnhvkedtkrgldhgawtplmlmypeanipvcqlslqpekdgtyhynvgkalaplkdegvliigsgsathnlkalqfdgdsvvSWASEFDCWLKDALLqgryedvnhyeekapygkmahpspehfyplhvamgaagedakaEQIHQSwqlcslscssykftaatas
Flexible Loop (DISEMBL)
metffishgsptlpideSLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTsgfnhvkedtkrgLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKFTAATAS
Low Complexity Region (SEG)
METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHqswqlcslscssYKFTAATAS
Disordered region (IsUnstruct)
***********TLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPY********EHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKF******
Disordered Region (DISOPRED)
METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKFTAAT**
Disordered Region (DISEMBL)
********GSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGA**********HQSWQLCSLSCSSYKFTAATAS
Disordered Region (DISPRO)
METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKFTA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKFTAATAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q949R4	269	4,5-DOPA dioxygenase extr	yes	no	0.943	0.925	0.700	1e-101
Q7XA48	271	4,5-DOPA dioxygenase extr	N/A	no	0.981	0.955	0.588	1e-85
P24197	262	Uncharacterized protein Y	N/A	no	0.852	0.858	0.392	3e-41
O74741	297	4,5-DOPA dioxygenase extr	yes	no	0.897	0.797	0.302	8e-22

>sp|Q949R4|DIOXL_ARATH 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/254 (70%), Positives = 206/254 (81%), Gaps = 5/254 (1%)

Query: 2   ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQND 61
           +TFF+SHGSPTL ID+SL+ R F K+W ++V  QKP SILVISAHW+T  P+VN V +N+
Sbjct: 6   QTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTVLRNN 65

Query: 62  TIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELL-RTSGFNHVKEDTKRGLDHGAWTPLML 120
           TI+DF GFP+ +YKLKY APGA +L KRVKELL +  G   V EDTKRGLDHGAW PLML
Sbjct: 66  TIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPLML 125

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQF---DG 177
           MYPEA+IP+CQLS+Q  ++G+YHYN+GKALA LKDEGVLIIGSGSATHNL+ L F   DG
Sbjct: 126 MYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNITDG 185

Query: 178 DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
            S V WA EFD WL+D+LLQGRY DVN +EEKAP  KMAHP PEH YPLHV MGAAG DA
Sbjct: 186 -SPVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGGDA 244

Query: 238 KAEQIHQSWQLCSL 251
           KAEQIH SWQL +L
Sbjct: 245 KAEQIHTSWQLGTL 258

May be involved in the metabolism of aromatic compounds.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: -EC: .EC: -

>sp|Q7XA48|DODA_PORGR 4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA PE=2 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/260 (58%), Positives = 189/260 (72%), Gaps = 1/260 (0%)

Query: 2   ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQND 61
           E+FF+SHG+P +  DES   R+FL  WK+ VF  KP SILV+SAHWETDVP V+  +  +
Sbjct: 11  ESFFLSHGNPAMLADESFIARNFLLGWKKNVFPVKPKSILVVSAHWETDVPCVSAGQYPN 70

Query: 62  TIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLM 121
            IYDF   P  ++++KYPAPG P LAKRV+ELL   GF   K D +RG DH +W PL +M
Sbjct: 71  VIYDFTEVPASMFQMKYPAPGCPKLAKRVQELLIAGGFKSAKLDEERGFDHSSWVPLSMM 130

Query: 122 YPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVV 181
            PEA+IPVCQLS+QP  D T+H+NVG+ALAPLK EGVL IGSG A H         D V 
Sbjct: 131 CPEADIPVCQLSVQPGLDATHHFNVGRALAPLKGEGVLFIGSGGAVHPSDDTPHWFDGVA 190

Query: 182 SWASEFDCWLKDALLQGRYEDVNHYEEKAPYG-KMAHPSPEHFYPLHVAMGAAGEDAKAE 240
            WA+EFD WL+DALL+GRYEDVN+Y+ KAP G K+AHP PEHF PLHVAMGA GE +KAE
Sbjct: 191 PWAAEFDQWLEDALLEGRYEDVNNYQTKAPEGWKLAHPIPEHFLPLHVAMGAGGEKSKAE 250

Query: 241 QIHQSWQLCSLSCSSYKFTA 260
            I+++W   +L  +SYKFT+
Sbjct: 251 LIYRTWDHGTLGYASYKFTS 270

Opens the cyclic ring of dihydroxy-phenylalanine (DOPA) between carbons 4 and 5, thus producing an unstable seco-DOPA that rearranges nonenzymatically to betalamic acid.

Portulaca grandiflora (taxid: 3583)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

>sp|P24197|YGID_ECOLI Uncharacterized protein YgiD OS=Escherichia coli (strain K12) GN=ygiD PE=1 SV=3

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 12/237 (5%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           M   F+ HGSP   ++++L  R + K     + L +P +I+V+SAHW T    V  +   
Sbjct: 6   MPALFLGHGSPMNVLEDNLYTRSWQKL---GMTLPRPQAIVVVSAHWFTRGTGVTAMETP 62

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
            TI+DF GFP+ LY   YPAPG+P LA+R+ ELL        KE    G DHG+W  L+ 
Sbjct: 63  PTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWGVLIK 120

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYP+A+IP+ QLS+   K   +H+ +G+ LA L+DEG++++ SG+  HNL+ +++ GDS 
Sbjct: 121 MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS 180

Query: 181 -VSWASEFDCWLKDALL-QGRYED---VNHYEEKAPYGKMAHPSPEHFYPLHVAMGA 232
              WA+ F+ ++K  L  QG  E    VN+ + +   G +++P+PEH+ PL   +GA
Sbjct: 181 PYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPLLYVLGA 235

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

>sp|O74741|DIOXL_SCHPO 4,5-DOPA dioxygenase extradiol-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1709.16c PE=3 SV=2

 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 24/261 (9%)

Query: 3   TFFISHGSPTLPI-----DESLQVRHFLKAWKEQVFLQ---------KPNSILVISAHWE 48
             +++HGSP L +     DE       L     Q   Q         +P  I+V SAH+E
Sbjct: 25  ALYLAHGSPFLMLPQSSDDEVFSNDSKLGGLHYQFLEQLGPFLLEKFRPKGIIVFSAHYE 84

Query: 49  T--DVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDT 106
           +   V   +   +N   YD+YGFP+ LY++K+ + G+  +A ++   L+           
Sbjct: 85  SRGSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALKEYQIPAKTVSG 144

Query: 107 KRGLDHGAWTPLMLMYPEA-NIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGS 165
            RGLDHG + P  +M+P+  NIP+ ++S+    D    Y VG+AL  L+ E  LI+  G 
Sbjct: 145 DRGLDHGVFVPFKIMFPDGLNIPLIEVSMH-TLDPMQLYKVGQALQSLRKE-YLIVSGGL 202

Query: 166 ATHNLKALQ-FDGDSVVSWASEFDCWLKDALLQGRYED-VNHY--EEKAPYGKMAHPSPE 221
             H  + L  F+ D+      EF   +  A+   +  D +N     +  PY + AHP  E
Sbjct: 203 NIHTFEDLSAFNEDTAADGYKEFQLDILKAIETDKQNDRLNKLLGLQLHPYFRKAHPREE 262

Query: 222 HFYPLHVAMGAAGEDAKAEQI 242
           HF PL+VA G  G   K++ +
Sbjct: 263 HFVPLYVAAG-LGSSGKSKVV 282

May be involved in the metabolism of aromatic compounds.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
225441813	263	PREDICTED: 4,5-DOPA dioxygenase extradio	0.981	0.984	0.760	1e-115
356559963	266	PREDICTED: 4,5-DOPA dioxygenase extradio	0.988	0.981	0.737	1e-112
255644965	266	unknown [Glycine max]	0.988	0.981	0.733	1e-111
359480904	266	PREDICTED: 4,5-DOPA dioxygenase extradio	0.996	0.988	0.706	1e-108
224080093	265	predicted protein [Populus trichocarpa]	0.984	0.981	0.696	1e-106
224080091	262	predicted protein [Populus trichocarpa]	0.988	0.996	0.678	1e-106
147844961	266	hypothetical protein VITISV_013290 [Viti	0.996	0.988	0.695	1e-106
388501808	267	unknown [Lotus japonicus]	0.981	0.970	0.707	1e-105
357498833	266	4,5-DOPA dioxygenase extradiol-like prot	0.988	0.981	0.695	1e-105
217075713	266	unknown [Medicago truncatula]	0.988	0.981	0.692	1e-104

>gi|225441813|ref|XP_002283881.1| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein [Vitis vinifera] gi|147811122|emb|CAN61349.1| hypothetical protein VITISV_021798 [Vitis vinifera] gi|297739669|emb|CBI29851.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/259 (76%), Positives = 225/259 (86%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           M+TF+ISHGSPTL IDESL  RHFLK+WKE+V  Q+P SILVISAHWET  PTVNVV QN
Sbjct: 1   MDTFYISHGSPTLSIDESLPARHFLKSWKEKVMGQRPTSILVISAHWETHEPTVNVVPQN 60

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+ +YKLKYPAPGAP+LAKRVKELL  S F  VKED KRGLDHGAW PLML
Sbjct: 61  DTIYDFYGFPKSMYKLKYPAPGAPELAKRVKELLMASNFKSVKEDKKRGLDHGAWVPLML 120

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQLS+Q  +DG+YHYN+G+ALAPL++EGVLIIGSGSATHNL+AL  + +SV
Sbjct: 121 MYPEADIPVCQLSVQTNRDGSYHYNMGRALAPLREEGVLIIGSGSATHNLRALNPNSESV 180

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
           V WA EFD WLK+ALL GRYED+NHYEEKAP+ + AHP PEHFYPLHVAMGAAGE+AKA+
Sbjct: 181 VPWAYEFDTWLKEALLDGRYEDINHYEEKAPHAREAHPWPEHFYPLHVAMGAAGENAKAK 240

Query: 241 QIHQSWQLCSLSCSSYKFT 259
            IH SW L +LS +SY+FT
Sbjct: 241 LIHHSWSLGTLSYASYQFT 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559963|ref|XP_003548265.1| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein-like [Glycine max]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/263 (73%), Positives = 229/263 (87%), Gaps = 2/263 (0%)

Query: 2   ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQ-N 60
           +TF+ISHGSPTL IDES+Q R FL++WK+ VF Q+P+SILVIS HWET VPTVNVV   N
Sbjct: 5   DTFYISHGSPTLSIDESIQARKFLQSWKKDVFPQRPSSILVISGHWETAVPTVNVVDSIN 64

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+Q+Y+LKYPAPGAP LA+RVKELL+ SGF+HV EDTKRGLDHGAW PL L
Sbjct: 65  DTIYDFYGFPKQMYQLKYPAPGAPQLARRVKELLKKSGFSHVDEDTKRGLDHGAWVPLFL 124

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQ+S+Q ++DGTYHYN+GKALAPLKDEGVLI+GSGSA HNL+AL+    +V
Sbjct: 125 MYPEADIPVCQISIQSQQDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLRALE-PHSTV 183

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
             WA EFD WLKDALL+GRYEDVNHYE+KAP+ K AHP P+HFYPLHVA+GAAGEDAKA+
Sbjct: 184 APWALEFDNWLKDALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEDAKAK 243

Query: 241 QIHQSWQLCSLSCSSYKFTAATA 263
            IH S +L SLS +SY+FT+A +
Sbjct: 244 LIHSSIELGSLSYASYQFTSAAS 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644965|gb|ACU22982.1| unknown [Glycine max]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/263 (73%), Positives = 228/263 (86%), Gaps = 2/263 (0%)

Query: 2   ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQ-N 60
           +TF+ISHGSPTL IDES+Q R FL++WK+ VF Q+P+SILVIS HWET VPTVNVV   N
Sbjct: 5   DTFYISHGSPTLSIDESIQARKFLQSWKKDVFPQRPSSILVISGHWETAVPTVNVVDSIN 64

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+Q+Y+LKYPAPGAP LA+RVKELL+ SGF+HV EDTKRGLDHGAW PL L
Sbjct: 65  DTIYDFYGFPKQMYQLKYPAPGAPQLARRVKELLKKSGFSHVDEDTKRGLDHGAWVPLFL 124

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQ+S+Q ++DGTYHYN+GKALAPLKDEGVLI+GSGSA HNL+AL+    +V
Sbjct: 125 MYPEADIPVCQISIQSQQDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLRALE-PHSTV 183

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
             WA EFD WLKDALL+GRYE VNHYE+KAP+ K AHP P+HFYPLHVA+GAAGEDAKA+
Sbjct: 184 APWALEFDNWLKDALLEGRYEVVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEDAKAK 243

Query: 241 QIHQSWQLCSLSCSSYKFTAATA 263
            IH S +L SLS +SY+FT+A +
Sbjct: 244 LIHSSIELGSLSYASYQFTSAAS 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480904|ref|XP_002267696.2| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein-like [Vitis vinifera] gi|296084824|emb|CBI27706.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/266 (70%), Positives = 219/266 (82%), Gaps = 3/266 (1%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           M+TF+ISHGSPTL IDESL  RHFLK+W+E+V  Q P SILVIS HWET  PTVNVV +N
Sbjct: 1   MDTFYISHGSPTLSIDESLPARHFLKSWREKVMGQPPTSILVISGHWETHEPTVNVVPRN 60

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+ +Y+ KYPAPGAP+LAKRVKELL  S F  V ED +RGLDHGAW PLML
Sbjct: 61  DTIYDFYGFPKPMYEFKYPAPGAPELAKRVKELLMASDFKCVNEDKERGLDHGAWVPLML 120

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDS- 179
           MYPEA+IPVCQLS+Q  +DG+YHYN+GKALAPL++EGVLI GSGSATHNL+ +  + DS 
Sbjct: 121 MYPEADIPVCQLSVQTNRDGSYHYNMGKALAPLREEGVLIFGSGSATHNLRTINRNSDSK 180

Query: 180 --VVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
             VV WA EFD WLK+ALL GRYEDVN YEEKAP+ + AHP P+HFYPLHVAMGAAG+DA
Sbjct: 181 AAVVPWAYEFDTWLKEALLDGRYEDVNCYEEKAPHAREAHPWPDHFYPLHVAMGAAGKDA 240

Query: 238 KAEQIHQSWQLCSLSCSSYKFTAATA 263
           KA+ IH SW   +LS +SY+FT A +
Sbjct: 241 KAKLIHHSWSFGTLSYASYQFTTAAS 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080093|ref|XP_002306014.1| predicted protein [Populus trichocarpa] gi|118485928|gb|ABK94809.1| unknown [Populus trichocarpa] gi|222848978|gb|EEE86525.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/260 (69%), Positives = 218/260 (83%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           METF++SHG+PTL IDE++  R F ++W++  + +KP+SILVISAHWET  PTVNVV +N
Sbjct: 4   METFYLSHGAPTLAIDETVPARKFFQSWQQSAYKEKPSSILVISAHWETAQPTVNVVDRN 63

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+ LY++KY  PGAP+LAKRVKELL  SG  HV ED KRGLDHGAW PLM 
Sbjct: 64  DTIYDFYGFPKPLYQIKYTPPGAPELAKRVKELLLASGIEHVDEDKKRGLDHGAWVPLMF 123

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQLS+Q ++DGT+HYN+GKALAPL++EGVLI+GSGSA HNL +   DG  V
Sbjct: 124 MYPEADIPVCQLSVQSDRDGTHHYNMGKALAPLREEGVLILGSGSAVHNLGSRLPDGSPV 183

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
            SWA EFD WLKDAL++GRYEDVNHYE KAP+ KMAHP P+HFYPLHVAMGAAGED+KA+
Sbjct: 184 PSWALEFDNWLKDALIEGRYEDVNHYESKAPHPKMAHPRPDHFYPLHVAMGAAGEDSKAK 243

Query: 241 QIHQSWQLCSLSCSSYKFTA 260
            +H SW   +LS +SY+FTA
Sbjct: 244 LVHSSWTDGTLSYASYQFTA 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080091|ref|XP_002306013.1| predicted protein [Populus trichocarpa] gi|222848977|gb|EEE86524.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/261 (67%), Positives = 216/261 (82%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           M+T +ISHGSP + IDES+  R FLK+W++ V  ++P +ILVIS HW+T  PTVNVV  N
Sbjct: 1   MDTVYISHGSPMMAIDESIPARQFLKSWQQTVLKERPKAILVISGHWDTKEPTVNVVNIN 60

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+ +Y+LKY  PGAP LAKRVKELL  +GF HV ED KRG+DHG W PLM 
Sbjct: 61  DTIYDFYGFPKPMYQLKYTPPGAPQLAKRVKELLMENGFKHVHEDKKRGVDHGTWVPLMF 120

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQLS+Q ++DGTYHYN+GKALAPLK+EG+L++GSG+ THNL A+  +G  V
Sbjct: 121 MYPEADIPVCQLSVQSDRDGTYHYNMGKALAPLKEEGILVMGSGATTHNLGAMHPEGTPV 180

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
            SWAS+FD WLK+ALL+GRYEDVNHY+ +APYGK AHP P+HFYPLHVAMGAAGE+AKA+
Sbjct: 181 PSWASQFDTWLKNALLEGRYEDVNHYDSRAPYGKKAHPWPDHFYPLHVAMGAAGENAKAK 240

Query: 241 QIHQSWQLCSLSCSSYKFTAA 261
            +H SW   +LS +SYKFTAA
Sbjct: 241 LLHHSWGNGTLSYASYKFTAA 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844961|emb|CAN83326.1| hypothetical protein VITISV_013290 [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/266 (69%), Positives = 217/266 (81%), Gaps = 3/266 (1%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           M+TF+ISHGSPTL IDESL  RHFLK+W+E+V  Q P SILVIS HWET  PTVNVV +N
Sbjct: 1   MDTFYISHGSPTLSIDESLPARHFLKSWREKVMGQPPTSILVISGHWETHEPTVNVVPRN 60

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+ +Y+ KYPAPGAP+LAKRVK LL  S F  V ED +RGLDHGAW PLML
Sbjct: 61  DTIYDFYGFPKPMYEXKYPAPGAPELAKRVKXLLXASDFKCVNEDKERGLDHGAWVPLML 120

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGD-- 178
           MYPEA+IPVCQLS+Q  +DG+YHYN+GKALAPL++EGVLI GSGSATHNL+ +  + D  
Sbjct: 121 MYPEADIPVCQLSVQTNRDGSYHYNMGKALAPLREEGVLIFGSGSATHNLRTINRNSDXK 180

Query: 179 -SVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
            +VV WA EFD WLK+ALL GRYEDVN YEEKAP+ + AHP P+HFYPLHVAMGAAG+DA
Sbjct: 181 AAVVPWAYEFDTWLKEALLDGRYEDVNCYEEKAPHAREAHPWPDHFYPLHVAMGAAGKDA 240

Query: 238 KAEQIHQSWQLCSLSCSSYKFTAATA 263
           KA+ IH SW   +LS + Y+FT A +
Sbjct: 241 KAKLIHHSWSFGTLSYAFYQFTTAAS 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501808|gb|AFK38970.1| unknown [Lotus japonicus]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/260 (70%), Positives = 217/260 (83%), Gaps = 1/260 (0%)

Query: 2   ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVV-RQN 60
           +TF+ISHGSPTL IDESL  R FL++WK++VF  +P SILVIS HW+T VPTVNVV   N
Sbjct: 5   DTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVVDSTN 64

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTIYDFYGFP+ +Y+LKYPAPGAP LAKRVKELL+  GF+ V ED KRGLDHGAW PL+L
Sbjct: 65  DTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWVPLLL 124

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQLS+Q   DGT+HYN+GKALAPLKDEGVLI+GSGSA HNL+AL+      
Sbjct: 125 MYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERHATVA 184

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
             WA EFD WLK+ALL+GRYEDVNHYE+KAP+ K AHP P+HFYPLHVA+GAAGE++KA+
Sbjct: 185 APWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGENSKAK 244

Query: 241 QIHQSWQLCSLSCSSYKFTA 260
            IH S  L SLS +SY+FT+
Sbjct: 245 LIHSSIDLGSLSYASYQFTS 264

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498833|ref|XP_003619705.1| 4,5-DOPA dioxygenase extradiol-like protein [Medicago truncatula] gi|355494720|gb|AES75923.1| 4,5-DOPA dioxygenase extradiol-like protein [Medicago truncatula]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/263 (69%), Positives = 220/263 (83%), Gaps = 2/263 (0%)

Query: 2   ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQ-N 60
           +TF+ISHGSPTL ID+S++ R FL++WK+ VF ++P SILVIS HW+T VPTVNV++  N
Sbjct: 5   DTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVIQTTN 64

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTI+DFYGFP+ +Y+LKYPAPGAP+LAKRVKELL  SGF+ V ED KRGLDHGAW PLML
Sbjct: 65  DTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWVPLML 124

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQLS+Q + DGTYHYN+GKALAPLKDEGVLI+GSGSA HNL  L      V
Sbjct: 125 MYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLNPRA-GV 183

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
             WA EFD WLKDALL GRYEDVNHYE+KAP+ K AHP P+HFYPLHVA+GAAGE++KA+
Sbjct: 184 APWALEFDNWLKDALLDGRYEDVNHYEQKAPHAKKAHPHPDHFYPLHVAIGAAGENSKAK 243

Query: 241 QIHQSWQLCSLSCSSYKFTAATA 263
            IH S  L +LS +SY+FT+ ++
Sbjct: 244 LIHSSINLGTLSYASYQFTSDSS 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075713|gb|ACJ86216.1| unknown [Medicago truncatula]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/263 (69%), Positives = 219/263 (83%), Gaps = 2/263 (0%)

Query: 2   ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQ-N 60
           +TF+ISHGSPTL ID+S++ R FL++WK+ VF ++P SILVIS HW+T VPTVNV++  N
Sbjct: 5   DTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVIQTTN 64

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           DTI+DFYGFP+ +Y+LKYPAPGAP+LAKRVKELL  SGF+ V ED KRGLDHGAW PLML
Sbjct: 65  DTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWVPLML 124

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
           MYPEA+IPVCQLS+Q + DGTYHYN+GKALAPLKDEGVLI+GSGSA HNL  L      V
Sbjct: 125 MYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLNPRA-GV 183

Query: 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240
             WA EFD WLKDALL GRYEDVNHYE+KAP+ K AHP P+HFYPLHV +GAAGE++KA+
Sbjct: 184 APWALEFDNWLKDALLDGRYEDVNHYEQKAPHAKKAHPHPDHFYPLHVVIGAAGENSKAK 243

Query: 241 QIHQSWQLCSLSCSSYKFTAATA 263
            IH S  L +LS +SY+FT+ ++
Sbjct: 244 LIHSSINLGTLSYASYQFTSDSS 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:505006468	269	LigB [Arabidopsis thaliana (ta	0.981	0.962	0.666	5.5e-93
UNIPROTKB|Q0C3K9	258	HNE_0958 "Extradiol-type ring-	0.946	0.968	0.458	2.9e-55
DICTYBASE|DDB_G0279843	271	DDB_G0279843 "Uncharacterized	0.962	0.937	0.397	4.6e-50
UNIPROTKB|Q885Q5	255	PSPTO_1776 "Uncharacterized pr	0.878	0.909	0.442	1.4e-46
UNIPROTKB|Q48FQ9	255	PSPPH_3633 "Extradiol-type rin	0.852	0.882	0.447	1e-45
UNIPROTKB|Q8EFR0	269	SO_1909 "Catalytic subunit of	0.897	0.881	0.431	1.6e-45
TIGR_CMR|SO_1909	269	SO_1909 "conserved hypothetica	0.897	0.881	0.431	1.6e-45
TIGR_CMR|BA_1859	253	BA_1859 "oxidoreductase" [Baci	0.893	0.932	0.401	9.1e-45
UNIPROTKB|P24197	262	ygiD "predicted dioxygenase" [	0.848	0.854	0.390	1.7e-41
UNIPROTKB|G4NGD8	341	MGG_04343 "Extradiol ring-clea	0.655	0.507	0.357	1.8e-25

TAIR|locus:505006468 LigB [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 176/264 (66%), Positives = 205/264 (77%)

Query:     2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQND 61
             +TFF+SHGSPTL ID+SL+ R F K+W ++V  QKP SILVISAHW+T  P+VN V +N+
Sbjct:     6 QTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTVLRNN 65

Query:    62 TIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELL-RTSGFNHVKEDTKRGLDHGAWTPLML 120
             TI+DF GFP+ +YKLKY APGA +L KRVKELL +  G   V EDTKRGLDHGAW PLML
Sbjct:    66 TIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPLML 125

Query:   121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQF---DG 177
             MYPEA+IP+CQLS+Q  ++G+YHYN+GKALA LKDEGVLIIGSGSATHNL+ L F   DG
Sbjct:   126 MYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNITDG 185

Query:   178 DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
              S V WA EFD WL+D+LLQGRY DVN +EEKAP  KMAHP PEH YPLHV MGAAG DA
Sbjct:   186 -SPVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGGDA 244

Query:   238 KAEQIHXXXXXXXXXXXXYKFTAA 261
             KAEQIH            Y FT++
Sbjct:   245 KAEQIHTSWQLGTLSYSSYSFTSS 268

GO:0005737 "cytoplasm" evidence=ISM

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA;ISS

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q0C3K9 HNE_0958 "Extradiol-type ring-opening dioxygenase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 117/255 (45%), Positives = 154/255 (60%)

Query:     5 FISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIY 64
             F+SHGSPTL  D+ +  R FL    +   L +P +ILV SAHWET  P +       TI+
Sbjct:     6 FVSHGSPTLIFDD-VPARDFLTQLGKT--LPRPKAILVASAHWETIAPRITASPAPPTIH 62

Query:    65 DFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE 124
             D+ GFPE +Y+ +YPAPG P LA R+K LL  +G +    D  RGLDHGAW PL L +PE
Sbjct:    63 DYGGFPEVMYQQQYPAPGDPALAARIKALLDGAGISATL-DPARGLDHGAWVPLKLAWPE 121

Query:   125 ANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVV-SW 183
             A+IPV QLSLQ      +H  +G+AL PL +EGVLI+GSGS TH+L+++ + G +    W
Sbjct:   122 ADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGSGSLTHDLRSVSWRGPNAEPDW 181

Query:   184 ASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIH 243
                F  W+  AL +GR +D+ +Y   AP     HPS EHF PL VA+GAAG  AK E++H
Sbjct:   182 VKSFGDWVNTALAEGRVDDLVNYRRLAPNAARNHPSEEHFLPLFVALGAAGAGAKMERLH 241

Query:   244 XXXXXXXXXXXXYKF 258
                         + F
Sbjct:   242 TSVTFSVLRMDTFAF 256

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS

DICTYBASE|DDB_G0279843 DDB_G0279843 "Uncharacterized protein ygiD" [Dictyostelium discoideum (taxid:44689)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 105/264 (39%), Positives = 157/264 (59%)

Query:     3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQ-KPNSILVISAHWETDVPTVNVVRQND 61
             + FISHG+P L +D S + R FLK   +  +   KP ++L+ISAHWE    T+    + D
Sbjct:     7 SIFISHGAPNLILDHSDKTREFLKTLSKNHYGSVKPKAVLLISAHWEEREFTIQTKPEPD 66

Query:    62 TIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLM 121
              IYDF GF  ++Y++KYPA  +P+L  RV EL   +    + +D KRG DHGAW P+ L+
Sbjct:    67 VIYDFGGFEPEMYRMKYPAKTSPELIDRVSELFAKAKIP-LGKDNKRGYDHGAWMPMKLV 125

Query:   122 YPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVV 181
             YPEA++P+ QLS++   +   H+ +G  L PL++EG L++ SG + HNL+A+ FD    +
Sbjct:   126 YPEADVPIVQLSIKENLNAAQHFQIGTILRPLREEGYLVLASGGSVHNLRAI-FDPKYHL 184

Query:   182 --SWASEFDCWLKDALLQ--G--RYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE 235
               SWAS F+ WL++ + +  G  R +++  YE   PY K+AHP  EH  P+ VA G A  
Sbjct:   185 DPSWASNFEAWLQNTICEKSGKEREDELLKYES-LPYYKLAHPRSEHLIPVFVAAGCASP 243

Query:   236 DAKAEQIHXXXXXXXXXXXXYKFT 259
             D+K  ++H            Y F+
Sbjct:   244 DSKGVRVHDFWKTPVFSVSSYLFS 267

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA

UNIPROTKB|Q885Q5 PSPTO_1776 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 108/244 (44%), Positives = 148/244 (60%)

Query:     3 TFFISHGSPTLPID--ESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
             + FISHGSPTL ++  ES      L A      L +P +I+++SAHWE+    VN   Q 
Sbjct:     4 SLFISHGSPTLALEPGESGPALAQLAA-----SLPRPRAIVMVSAHWESHELIVNGNPQP 58

Query:    61 DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
             +T +DF GF  +L+ ++YPAPG P+L + + ELL  +G    + D++R  DHG W PL L
Sbjct:    59 ETWHDFGGFAAELFAMQYPAPGLPELTRTIVELLTANGLP-ARIDSRRPFDHGVWVPLSL 117

Query:   121 MYPEANIPVCQLSLQPEKDG-TYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDG-- 177
             MYP+A+IPV Q+SL P + G      VG+ALA L+++GVL+IGSGS THNL  L +    
Sbjct:   118 MYPQADIPVVQVSL-PSRQGPALQTQVGRALAGLREQGVLVIGSGSITHNLYDLDWSAAP 176

Query:   178 DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
             D V  WA+EF  W+ D L       ++HY  +AP+   AHPS EH  PL+ A GA G  +
Sbjct:   177 DRVEPWAAEFRDWIIDKLQSNDEAALHHYRTQAPHAVRAHPSDEHLLPLYFARGAGGAFS 236

Query:   238 KAEQ 241
              A Q
Sbjct:   237 IAYQ 240

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48FQ9 PSPPH_3633 "Extradiol-type ring-opening dioxygenase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 106/237 (44%), Positives = 144/237 (60%)

Query:     3 TFFISHGSPTLPID--ESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
             + FISHGSP L ++  ES      L A      L +P++I+V+SAHWE+   TVN   + 
Sbjct:     4 SLFISHGSPMLALEPGESGPALTRLAA-----SLPRPSAIVVVSAHWESHELTVNANPEP 58

Query:    61 DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
             +T +DF GF  +L+ ++YPAPG P+L++ + ELL  SG    + D++R  DHG W PL L
Sbjct:    59 ETWHDFGGFAAELFAVQYPAPGLPELSRTIVELLAASGLP-ARIDSRRPFDHGVWVPLSL 117

Query:   121 MYPEANIPVCQLSLQPEKDGT-YHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGD- 178
             MYP A+IPV Q+SL P + G      VG+ALA L+ +GVLIIGSGS THNL+ L ++   
Sbjct:   118 MYPNADIPVVQVSL-PSRQGPELQTRVGRALASLRAQGVLIIGSGSITHNLRDLDWNAGP 176

Query:   179 -SVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAG 234
              S   WA+ F  W+ D L       ++HY   AP+   AHPS EH  PL+ A GA G
Sbjct:   177 GSTEPWAATFRDWMIDKLQNDDEAALHHYRSLAPHAMRAHPSDEHLLPLYFARGAGG 233

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS

UNIPROTKB|Q8EFR0 SO_1909 "Catalytic subunit of aromatic ring-opening dioxygenase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 107/248 (43%), Positives = 145/248 (58%)

Query:     1 METFFISHGSPTLPI--DESL-QVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVV 57
             M   F+ HG   LP+  D +  Q+R FL +   Q+ +  P +IL+I+AHWE    T++  
Sbjct:     9 MPVLFVPHGGGPLPLLNDANHHQLRDFLSSVGGQIPM--PKAILLITAHWEEAQVTLSSH 66

Query:    58 RQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTP 117
                  ++D+YGFP + YKL YPAPG P+LA+++  LL+ SG   VK D +R  DHG + P
Sbjct:    67 PHPGMLFDYYGFPPEAYKLSYPAPGNPELAEKIASLLKASGIA-VKLDNQRAFDHGTFVP 125

Query:   118 LMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDG 177
             L LMYPEANIPV Q+SL    D   H  +G+ALA L+ +GVLI+GSG + HN++A  F  
Sbjct:   126 LKLMYPEANIPVVQMSLVQHLDPRAHIAIGEALASLRQQGVLIVGSGMSFHNMRAF-FSS 184

Query:   178 D-SVVSWASEFDCWLKDALLQGRYEDVNHYEE--KAPYGKMAHPSPEHFYPLHVAMGAAG 234
             D  V+  + EFD WL   L    +   +   E   AP  + +HP  EH  PLHV  GAA 
Sbjct:   185 DPKVLPRSQEFDDWLTQVLTLAPHHAKSQLIEWQSAPEARFSHPREEHLLPLHVCFGAAS 244

Query:   235 -EDAKAEQ 241
              E  KA Q
Sbjct:   245 SESPKAIQ 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1909 SO_1909 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 107/248 (43%), Positives = 145/248 (58%)

Query:     1 METFFISHGSPTLPI--DESL-QVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVV 57
             M   F+ HG   LP+  D +  Q+R FL +   Q+ +  P +IL+I+AHWE    T++  
Sbjct:     9 MPVLFVPHGGGPLPLLNDANHHQLRDFLSSVGGQIPM--PKAILLITAHWEEAQVTLSSH 66

Query:    58 RQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTP 117
                  ++D+YGFP + YKL YPAPG P+LA+++  LL+ SG   VK D +R  DHG + P
Sbjct:    67 PHPGMLFDYYGFPPEAYKLSYPAPGNPELAEKIASLLKASGIA-VKLDNQRAFDHGTFVP 125

Query:   118 LMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDG 177
             L LMYPEANIPV Q+SL    D   H  +G+ALA L+ +GVLI+GSG + HN++A  F  
Sbjct:   126 LKLMYPEANIPVVQMSLVQHLDPRAHIAIGEALASLRQQGVLIVGSGMSFHNMRAF-FSS 184

Query:   178 D-SVVSWASEFDCWLKDALLQGRYEDVNHYEE--KAPYGKMAHPSPEHFYPLHVAMGAAG 234
             D  V+  + EFD WL   L    +   +   E   AP  + +HP  EH  PLHV  GAA 
Sbjct:   185 DPKVLPRSQEFDDWLTQVLTLAPHHAKSQLIEWQSAPEARFSHPREEHLLPLHVCFGAAS 244

Query:   235 -EDAKAEQ 241
              E  KA Q
Sbjct:   245 SESPKAIQ 252

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|BA_1859 BA_1859 "oxidoreductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 98/244 (40%), Positives = 148/244 (60%)

Query:     1 METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVV-RQ 59
             M + F++HGSP L I ++     FLK   E     KP +I++ +AHWE++V T++    +
Sbjct:     2 MPSLFLAHGSPMLAIQDT-DYTSFLKTLGETY---KPKAIVIFTAHWESEVLTISSTDNE 57

Query:    60 NDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLM 119
              +TIYDF GFP +LY++KY A G+  +A  ++   +  G   V  +  RGLDHG+WT L 
Sbjct:    58 YETIYDFGGFPPELYEIKYRAKGSSSIASMLETKFKNKGIP-VHHNMTRGLDHGSWTLLH 116

Query:   120 LMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDS 179
              MYPEANIPV Q+S+ P       + +G+AL  L  E +L+IGSG   HNL+AL+++  +
Sbjct:   117 RMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQTT 176

Query:   180 VVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKA 239
                WA EFD W+   +     + + ++E+ AP+ ++A P  EHF PL +AMG+ GE+   
Sbjct:   177 PEQWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGS-GEN-NG 234

Query:   240 EQIH 243
             E IH
Sbjct:   235 EVIH 238

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|P24197 ygiD "predicted dioxygenase" [Escherichia coli K-12 (taxid:83333)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 93/238 (39%), Positives = 145/238 (60%)

Query:     1 METFFISHGSPTLPIDESLQVRHFLKAWKEQ-VFLQKPNSILVISAHWETDVPTVNVVRQ 59
             M   F+ HGSP   ++++L  R    +W++  + L +P +I+V+SAHW T    V  +  
Sbjct:     6 MPALFLGHGSPMNVLEDNLYTR----SWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMET 61

Query:    60 NDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLM 119
               TI+DF GFP+ LY   YPAPG+P LA+R+ ELL        KE    G DHG+W  L+
Sbjct:    62 PPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAW--GFDHGSWGVLI 119

Query:   120 LMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDS 179
              MYP+A+IP+ QLS+   K   +H+ +G+ LA L+DEG++++ SG+  HNL+ +++ GDS
Sbjct:   120 KMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDS 179

Query:   180 V-VSWASEFDCWLKDALL-QGRYED---VNHYEEKAPYGKMAHPSPEHFYPLHVAMGA 232
                 WA+ F+ ++K  L  QG  E    VN+ + +   G +++P+PEH+ PL   +GA
Sbjct:   180 SPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPLLYVLGA 235

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|G4NGD8 MGG_04343 "Extradiol ring-cleavage dioxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 68/190 (35%), Positives = 103/190 (54%)

Query:    35 QKPNSILVISAHWET----DVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRV 90
             Q+P +I++++AHW        P V    + + IYD+YGFP + Y+ KYPAPGAPDLA R 
Sbjct:    99 QRPRAIILVTAHWVAKSPLSFPEVTSSARPELIYDYYGFPAESYQFKYPAPGAPDLAARF 158

Query:    91 KELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKAL 150
               +    G +  +    RG DHG + PL+L  PEA++PV Q+S+    D   H+ +G+AL
Sbjct:   159 AAVAADHGLSP-RLHPDRGWDHGVFVPLLLARPEADVPVLQVSVLGSDDARAHFRLGRAL 217

Query:   151 APLK----DEG---VLIIGSGSAT-HNLKALQFDGDSVV---SWASEFDCWLKDALLQGR 199
               L+    + G   V I+GSG A+ HNL+ +   GD  +   ++ +  D W         
Sbjct:   218 GDLQRREAEAGNGPVAIVGSGFASFHNLR-IMLSGDGTIESDAFRTGHDAWNAAVTDAAT 276

Query:   200 YEDVNHYEEK 209
              +DV   E+K
Sbjct:   277 TKDVQAREDK 286

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XA48	DODA_PORGR	1, ., 1, 3, ., -, ., -	0.5884	0.9810	0.9557	N/A	no
Q949R4	DIOXL_ARATH	1, ., 1, 3, ., -, ., -	0.7007	0.9431	0.9256	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.16	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
cd07363	253	cd07363, 45_DOPA_Dioxygenase, The Class III extrad	1e-128
COG3384	268	COG3384, COG3384, Aromatic ring-opening dioxygenas	3e-80
pfam02900	258	pfam02900, LigB, Catalytic LigB subunit of aromati	2e-79
PRK10628	246	PRK10628, PRK10628, LigB family dioxygenase; Provi	1e-56
cd07320	260	cd07320, Extradiol_Dioxygenase_3B_like, Subunit B	4e-23
cd07362	272	cd07362, HPCD_like, Class III extradiol dioxygenas	2e-08
cd07359	271	cd07359, PCA_45_Doxase_B_like, Subunit B of the Cl	6e-05
cd07367	268	cd07367, CarBb, CarBb is the B subunit of the Clas	2e-04
PRK13364	278	PRK13364, PRK13364, protocatechuate 4,5-dioxygenas	7e-04
PRK03881	467	PRK03881, PRK03881, hypothetical protein; Provisio	0.001

>gnl|CDD|153375 cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine

 Score =  364 bits (936), Expect = e-128
 Identities = 141/257 (54%), Positives = 183/257 (71%), Gaps = 6/257 (2%)

Query: 3   TFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDT 62
             FISHGSP L ++++     FL+   ++  L KP +ILVISAHWET  PTV    + +T
Sbjct: 2   VLFISHGSPMLALEDNPATA-FLRELGKE--LPKPKAILVISAHWETRGPTVTASARPET 58

Query: 63  IYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMY 122
           IYDFYGFP +LY+++YPAPG+P+LA+RV ELL+ +G    + D +RGLDHGAW PL LMY
Sbjct: 59  IYDFYGFPPELYEIQYPAPGSPELAERVAELLKAAGI-PARLDPERGLDHGAWVPLKLMY 117

Query: 123 PEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDS-VV 181
           P+A+IPV QLSL    D   HY +G+ALAPL+DEGVLIIGSGS+ HNL+AL++ G +   
Sbjct: 118 PDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLIIGSGSSVHNLRALRWGGPAPPP 177

Query: 182 SWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQ 241
            WA EFD WLKDAL  G  + +  Y EKAP+ + AHP+ EH  PL VA+GAAG D +A +
Sbjct: 178 PWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGD-EARR 236

Query: 242 IHQSWQLCSLSCSSYKF 258
           +H S +  SLS SSY+F
Sbjct: 237 LHDSIEYGSLSMSSYRF 253

This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 253

>gnl|CDD|225919 COG3384, COG3384, Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]

 Score =  242 bits (620), Expect = 3e-80
 Identities = 106/261 (40%), Positives = 154/261 (59%), Gaps = 6/261 (2%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWET-DVPTVNVVRQ 59
           M   F+SHGSP L ++++   R  L+    ++   +P++I+V SAHWET     V     
Sbjct: 9   MPALFLSHGSPMLALEDNAATR-GLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEH 67

Query: 60  NDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLM 119
            +TI+DFYGFP++LY +KYPAPG+P+LA+R+ ELL   G     +    GLDHG W PL 
Sbjct: 68  PETIHDFYGFPDELYDVKYPAPGSPELAQRIVELLAKLGV--PADAPSWGLDHGTWVPLR 125

Query: 120 LMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDS 179
            M+P+A+IPV Q+S+        HY +G+AL  L++EGVLI+ SGS  HNL+ L++ GD 
Sbjct: 126 YMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEGVLILASGSLVHNLRLLKWAGDG 185

Query: 180 VVSWASEFDCWLKDALL--QGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
              WA EFD W+K  ++   G +  + +Y    P   +A P  EH  PL  A+GA   D 
Sbjct: 186 PYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAWDGDE 245

Query: 238 KAEQIHQSWQLCSLSCSSYKF 258
           K E +   ++  SLS  + +F
Sbjct: 246 KVEIVTDLFESGSLSMLNAQF 266

Length = 268

>gnl|CDD|217276 pfam02900, LigB, Catalytic LigB subunit of aromatic ring-opening dioxygenase

 Score =  239 bits (613), Expect = 2e-79
 Identities = 98/266 (36%), Positives = 136/266 (51%), Gaps = 23/266 (8%)

Query: 7   SHGSPTLPIDESLQ------VRHFLKAWKEQVFLQKPNSILVISAHWETDVPT---VNVV 57
           SHG P L +++         V       + ++   +P+ I+V+S HWETD+     V   
Sbjct: 1   SHGPPMLALEDPPPDVYWEPVFDGFAEIRARLRELRPDVIVVVSPHWETDLLPTFCVGAA 60

Query: 58  RQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTP 117
              + I+DF GFP++LY+LKYPAPG P+LA+ + ELLR +G +    D +RGLDHG W P
Sbjct: 61  ETPEGIHDFGGFPDELYRLKYPAPGDPELAEAIAELLRAAGID-AAVDPRRGLDHGTWVP 119

Query: 118 LMLMYPEANIPVCQLSLQ--PEKDGTYHYNVGKALAPL---KDEGVLIIGSGSATHNLKA 172
           L LMYP  +IPV  +S+          HY +G+ALA      DE VL+IGSG  +HNL+ 
Sbjct: 120 LSLMYPA-DIPVVPVSVNSVALLSPARHYELGRALAKAREKLDERVLVIGSGGLSHNLRV 178

Query: 173 LQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGA 232
            +        W  EFD W  D L  G  E +     +AP     HP  E   P  VA+GA
Sbjct: 179 PRL---GPTPWNEEFDRWFLDLLKSGDLEALLAMLNEAPDAAAGHP-EEELLPWVVALGA 234

Query: 233 AGEDAKAEQIHQSWQLCSLSCSSYKF 258
            G    AE   + +   ++  S   F
Sbjct: 235 LG---GAEIRAEVFGYGAVPMSIAGF 257

Length = 258

>gnl|CDD|182598 PRK10628, PRK10628, LigB family dioxygenase; Provisional

 Score =  181 bits (460), Expect = 1e-56
 Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 11/205 (5%)

Query: 34  LQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKEL 93
           L +P +I+V+SAHW T    V  +    TI+DF GFP+ LY   YPAPG+P LA+R+ EL
Sbjct: 20  LPRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLVEL 79

Query: 94  LRTSGFNHVKEDTKR-GLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAP 152
           L       V  D +  G DHG+W  L+ MYP+A+IP+ QLS+   K   +H+ +G+ LA 
Sbjct: 80  LAPV---PVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAA 136

Query: 153 LKDEGVLIIGSGSATHNLKALQFDGD-SVVSWASEFDCWLKDAL-LQGRYED---VNHYE 207
           L+DEG++++ SG+  HNL+ +++ GD S   WA  F+ ++K  L  QG  E    VN+ +
Sbjct: 137 LRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAESFNQFVKANLTWQGPVEQHPLVNYLQ 196

Query: 208 EKAPYGKMAHPSPEHFYPLHVAMGA 232
            +   G +++P+PEH+ PL   +GA
Sbjct: 197 HEG--GALSNPTPEHYLPLLYVLGA 219

Length = 246

>gnl|CDD|153371 cd07320, Extradiol_Dioxygenase_3B_like, Subunit B of Class III Extradiol ring-cleavage dioxygenases

 Score = 94.5 bits (235), Expect = 4e-23
 Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 5   FISHGSPT-LPIDESLQVRHFLKAW-KEQVFLQKPNSILVISAHWETDVPT--VNVVRQN 60
            I HG       D       +      +++  ++P++I+V+S H    +    +      
Sbjct: 4   IIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETF 63

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           +T            +  Y   G PDLA  + E L          +   GLDHG   PL  
Sbjct: 64  ETADSGQW----GRRPVYDVKGDPDLAWEIAEELIKE-IPVTIVNEMDGLDHGTLVPLSY 118

Query: 121 MYPE-ANIPVCQLSLQPEK-DGTYHYNVGKALAPL---KDEGVLIIGSGSATHNLKALQF 175
           ++ +  +  V  LS+          +  GKA+       D  V ++ SG  +H L+  + 
Sbjct: 119 IFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVEPSDLRVHVVASGDLSHQLQGDRP 178

Query: 176 DGDS-VVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAG 234
              S     A EFD ++ D L +    +         Y  +++ +P  F+PL + +GA  
Sbjct: 179 SSQSGYYPIAEEFDKYVIDNLEELDPVEFK---NMHQYLTISNATPCGFHPLLILLGALD 235

Query: 235 EDAKA 239
              + 
Sbjct: 236 GKERK 240

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class III enzymes. Enzymes belonging to this family include Protocatechuate 4,5-dioxygenase (LigAB), 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarB), 4,5-DOPA Dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase, and 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD). There are also some family members that do not show the typical dioxygenase activity. Length = 260

>gnl|CDD|153374 cd07362, HPCD_like, Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 20/166 (12%)

Query: 36  KPNSILVISAHWET-------DVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAK 88
           KP+ ILVIS HW +       D    +         D       +  + Y  PG P+L +
Sbjct: 43  KPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL------ISDVPYDYPGDPELGR 96

Query: 89  RVKELLRTSGFNHVKEDTKR-GLDHGAWTPLMLMYPEANIPVCQLS-----LQPEKDGTY 142
            + E  + +G      +      D+G   PL  + P  +IPV  +S        E+  T+
Sbjct: 97  LLVEEGQEAGLRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTW 156

Query: 143 HYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFD 188
              +GKAL    D+ V+ + SGS +HNL       + +  + S  +
Sbjct: 157 GEVIGKALLE-SDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAE 201

This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetramer composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and both belong to this family. Like all Class III extradiol dioxygenases, these enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 272

>gnl|CDD|153372 cd07359, PCA_45_Doxase_B_like, Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 42/159 (26%), Positives = 59/159 (37%), Gaps = 25/159 (15%)

Query: 63  IYDFYG--FPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
           I D Y       L   + P PG  DLA+ +   L   GF+       R LDHG   PL  
Sbjct: 71  IADSYEGPDEGWLGIPRAPVPGDADLARHLLAGLVEDGFDVAFSYELR-LDHGITVPLHF 129

Query: 121 MYPEANIPV------CQLSLQPEKDGTYH--YNVGKALAP-----LKDEGVLIIGSGSAT 167
           + P+ ++PV      C     P    +    Y +G+AL         D  V ++G+G  +
Sbjct: 130 LDPDNDVPVVPVLVNCVTPPLP----SLRRCYALGRALRRAIESFPGDLRVAVLGTGGLS 185

Query: 168 HNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHY 206
           H        G        EFD    D L +G  E +   
Sbjct: 186 H-----WPGGPRHGEINEEFDREFLDLLERGDLEALLKA 219

This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B. Length = 271

>gnl|CDD|153379 cd07367, CarBb, CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 16/138 (11%)

Query: 77  KYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSL-- 134
           +   PG  + A+         GF+  + +  R  DHG   PL+ M P+ +IPV  L +  
Sbjct: 83  RELFPGHREFARAFVRQAAEDGFDLAQAEELR-PDHGVMVPLLFMGPKLDIPVVPLIVNI 141

Query: 135 --QPEKDGTYHYNVGKALAPL------KDEGVLIIGSGSATHNLKALQFDGDSVVSWASE 186
              P       + +GK LA          E V +I +G  +H    L       V+    
Sbjct: 142 NTDPAPSPRRCWALGKVLAQYVEKRRPAGERVAVIAAGGLSH---WLGVPRHGEVN--EA 196

Query: 187 FDCWLKDALLQGRYEDVN 204
           FD    D L  G  E + 
Sbjct: 197 FDRMFLDLLEGGNGERLA 214

CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl. Length = 268

>gnl|CDD|184003 PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta; Provisional

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 16/97 (16%)

Query: 111 DHGAWTPLMLMYPEAN-----IPVCQLSLQ---PEKDGTYHYN--VGKALAPL-KDEGVL 159
           DH    PL L +P  +     +PVC  ++Q   P     Y     +G+A+A    DE V+
Sbjct: 124 DHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVV 183

Query: 160 IIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALL 196
           +IG+G  +H     Q DG+       +FD    D+L+
Sbjct: 184 VIGTGGLSH-----QLDGERAGFINKDFDLQCMDSLV 215

Length = 278

>gnl|CDD|235170 PRK03881, PRK03881, hypothetical protein; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 31/167 (18%)

Query: 25  LKAWKEQVFLQKPNSILVISAHWE--TDVPTVNVVRQNDTIY-DF--YGFPEQLYKLKYP 79
           L+    ++  +KP++I++IS H     D   ++       +  D   +G PE    + + 
Sbjct: 34  LRELARRIAEKKPDTIIIISPHGPVFRDAVAIS---DGPRLKGDLGRFGAPE----VSFS 86

Query: 80  APGAPDLAKRVKELLRTSGFNHVKEDTK--------RGLDHGAWTPLMLM---YPEANIP 128
                +L + + E  +  G   V+ D +          LDHG   PL  +     +  + 
Sbjct: 87  FKNDLELVEEIAEEAKKEGIPVVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLV 146

Query: 129 VCQLS-LQPEKDGTYHYNVGKALAPL---KDEGVLIIGSGSATHNLK 171
                 L PE+     Y  G A+          V++I SG  +H L 
Sbjct: 147 HISYGGLSPEE----LYKFGMAIREAAEELGRKVVLIASGDLSHRLT 189

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
COG3384	268	Aromatic ring-opening dioxygenase, catalytic LigB	100.0
PRK10628	246	LigB family dioxygenase; Provisional	100.0
cd07363	253	45_DOPA_Dioxygenase The Class III extradiol dioxyg	100.0
PF02900	272	LigB: Catalytic LigB subunit of aromatic ring-open	100.0
cd07373	271	2A5CPDO_A The alpha subunit of the Class III extra	100.0
TIGR02298	282	HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase	100.0
cd07370	280	HPCD The Class III extradiol dioxygenase, homoprot	100.0
cd07362	272	HPCD_like Class III extradiol dioxygenases with si	100.0
cd07371	268	2A5CPDO_AB The alpha and beta subunits of the Clas	100.0
cd07952	256	ED_3B_like Uncharacterized class III extradiol dio	100.0
cd07320	260	Extradiol_Dioxygenase_3B_like Subunit B of Class I	100.0
cd07367	268	CarBb CarBb is the B subunit of the Class III Extr	100.0
cd07359	271	PCA_45_Doxase_B_like Subunit B of the Class III Ex	100.0
PRK03881	467	hypothetical protein; Provisional	100.0
cd07372	294	2A5CPDO_B The beta subunit of the Class III extrad	100.0
PRK13372	444	pcmA protocatechuate 4,5-dioxygenase; Provisional	100.0
cd07364	277	PCA_45_Dioxygenase_B Subunit B of the Class III ex	100.0
cd07949	276	PCA_45_Doxase_B_like_1 The B subunit of unknown Cl	100.0
cd07368	277	PhnC_Bs_like PhnC is a Class III Extradiol ring-cl	100.0
PRK13366	284	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
cd07951	256	ED_3B_N_AMMECR1 The N-terminal domain, an extradio	100.0
PRK13364	278	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13358	269	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
cd07950	277	Gallate_Doxase_N The N-terminal domain of the Clas	100.0
cd07369	329	PydA_Rs_like PydA is a Class III Extradiol ring-cl	100.0
cd07366	328	3MGA_Dioxygenase Subunit B of the Class III Extrad	100.0
PRK13365	279	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13367	420	protocatechuate 4,5-dioxygenase; Provisional	100.0
PRK13363	335	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
cd07365	310	MhpB_like Subunit B of the Class III Extradiol rin	100.0
PRK13370	313	mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase	100.0
PRK13373	344	putative dioxygenase; Provisional	100.0
COG3885	261	Uncharacterized conserved protein [Function unknow	99.9
cd07361	266	MEMO_like Memo (mediator of ErbB2-driven cell moti	99.86
PRK00782	267	hypothetical protein; Provisional	99.78
COG1355	279	Predicted dioxygenase [General function prediction	98.95
PF01875	276	Memo: Memo-like protein; InterPro: IPR002737 This	98.79
KOG3086	296	consensus Predicted dioxygenase [General function	95.72
TIGR02017	263	hutG_amidohyd N-formylglutamate amidohydrolase. In	83.42
PRK03995	267	hypothetical protein; Provisional	82.83
PRK05723	151	flavodoxin; Provisional	81.08

>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-72  Score=490.95  Aligned_cols=257  Identities=41%  Similarity=0.748  Sum_probs=242.6

Q ss_pred             CcEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCC-CeEEEecCCCccCCCCCCccccccccCC
Q 042295            1 METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDV-PTVNVVRQNDTIYDFYGFPEQLYKLKYP   79 (264)
Q Consensus         1 ~p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~-~~i~~~~~~~~~~D~~gfP~~~y~~~y~   79 (264)
                      ||++|+|||+|++++++ +++.+++++||+++++.+||+|||+|+||.+++ ..|++.++++++|||||||+++|+++|+
T Consensus         9 ~p~LflshgsP~~~~~~-n~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~Y~   87 (268)
T COG3384           9 MPALFLSHGSPMLALED-NAATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEHPETIHDFYGFPDELYDVKYP   87 (268)
T ss_pred             ccceeecCCCcccccCc-cHHHHHHHHHHHhhhhcCCCEEEEEeceEEecCceeEEcccCcceeeccCCCCHHHHhccCC
Confidence            69999999999999954 899999999999999899999999999999987 7899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeE
Q 042295           80 APGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVL  159 (264)
Q Consensus        80 ~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~  159 (264)
                      ++|+||||++|++++.+.||+ .. .++||||||+|+||++|||++|+||||||+++.++++.+|++|++|++||+|.|+
T Consensus        88 a~G~peLa~~i~~~l~~~~v~-a~-~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~vl  165 (268)
T COG3384          88 APGSPELAQRIVELLAKLGVP-AD-APSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEGVL  165 (268)
T ss_pred             CCCCHHHHHHHHHHhcccCcc-cc-CCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCCEE
Confidence            999999999999999999994 43 3789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccccccccCCCCCcchHHHHHHHHHHHHH--cCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCC
Q 042295          160 IIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALL--QGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA  237 (264)
Q Consensus       160 iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~--~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~  237 (264)
                      |||||+++|||+...+...+..+|+++||+|+++.|.  .||.+.++++.+..|.+.+++|+++|++|+++++|+.+.+.
T Consensus       166 ilaSGs~~H~l~~~~~~~~~~~~~a~~F~~~~~~~v~~~~~d~~~~~~~~~~~p~~~~~~~~~eH~~pL~~~lG~~~~~~  245 (268)
T COG3384         166 ILASGSLVHNLRLLKWAGDGPYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAWDGDE  245 (268)
T ss_pred             EEecCcceeehhhhhhcCCCCChhHHHHHHHHHHHHHHhccchHHHhHhhhhchHhhhCCCCccchHHHHHHhhccCCCC
Confidence            9999999999999988666678999999999999996  45999999997778999999999999999999999998878


Q ss_pred             ceeEeccceeccceeeeEEEecc
Q 042295          238 KAEQIHQSWQLCSLSCSSYKFTA  260 (264)
Q Consensus       238 ~~~~~~~~~~~~~~s~~~~~~~~  260 (264)
                      +++++.+.+.++++||.+.+|..
T Consensus       246 ~~ei~~d~~~~~s~sm~~~~F~~  268 (268)
T COG3384         246 KVEIVTDLFESGSLSMLNAQFPE  268 (268)
T ss_pred             CeeEEecccccccceeEEEecCC
Confidence            99999999999999999999964

>PRK10628 LigB family dioxygenase; Provisional

Probab=100.00  E-value=3e-72  Score=493.44  Aligned_cols=242  Identities=33%  Similarity=0.618  Sum_probs=220.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHH
Q 042295           12 TLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVK   91 (264)
Q Consensus        12 ~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~   91 (264)
                      ++++ +++++.++|+++++++  .+|++|||||+||++..+.|+.+++++++|||||||+++|+++|+++|+|+||++|+
T Consensus         1 ~~~l-e~~~~~~~l~~lg~~l--~~PkaIlvvSAHW~t~~~~v~~~~~p~~i~DF~GFP~elY~~~Ypa~G~p~LA~~i~   77 (246)
T PRK10628          1 MNVL-EDNLYTRAWRTLGETL--PRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLV   77 (246)
T ss_pred             Cccc-cccHHHHHHHHHHHhC--CCCCEEEEEcCCcCCCCCcEEecCCCCcccCCCCCCHHHeeecCCCCCCHHHHHHHH
Confidence            3556 4578999999999986  689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEEEecCCccccc
Q 042295           92 ELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLK  171 (264)
Q Consensus        92 ~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iIaSG~lsH~l~  171 (264)
                      +.|++.|+.  ..+.+||||||+||||++|||++||||||||++...+++.||+||++|++|||++|+|||||+++|||+
T Consensus        78 ~ll~~~~~~--~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIigSG~~~HNL~  155 (246)
T PRK10628         78 ELLAPVPVT--LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR  155 (246)
T ss_pred             HHhhhcCcc--cCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEecCccccchh
Confidence            999988872  233459999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccC-CCCCcchHHHHHHHHHHHHHcC-C--HHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCCceeEecccee
Q 042295          172 ALQFD-GDSVVSWASEFDCWLKDALLQG-R--YEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHQSWQ  247 (264)
Q Consensus       172 ~~~~~-~~~~~~~~~~FD~~~~~~l~~g-d--~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~~~~~~~~~~~  247 (264)
                      ...+. .....+|+.+||+|+.++|+++ |  .++|++|++ .|+++.||||+|||+||++++||++.+++.+++|++|+
T Consensus       156 ~~~~~~~~~~~~wa~~F~~wl~~~l~~~~~~r~~~L~~~~~-~p~a~~ahPt~EH~lPL~~alGAa~~~~~~~~~~~~~~  234 (246)
T PRK10628        156 TVKWHGDSSPYPWAESFNQFVKANLTWQGPVEQHPLVNYLQ-HEGGALSNPTPEHYLPLLYVLGAWDGKEPISIPVDGIE  234 (246)
T ss_pred             hhcccCCCCCchHHHHHHHHHHHHHhcCccchHHHHHHHHh-CcChhhcCCChHHHHHHHHHhcCCCCCCCceeeecccc
Confidence            76542 2345689999999999999944 6  999999954 59999999999999999999999876666789999999


Q ss_pred             ccceeeeEEEec
Q 042295          248 LCSLSCSSYKFT  259 (264)
Q Consensus       248 ~~~~s~~~~~~~  259 (264)
                      +||+||+||+|+
T Consensus       235 ~gslsm~s~~f~  246 (246)
T PRK10628        235 MGSLSMLSVQVG  246 (246)
T ss_pred             cccceeEEEEeC
Confidence            999999999996

>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine

Probab=100.00  E-value=7.5e-71  Score=490.58  Aligned_cols=252  Identities=56%  Similarity=0.969  Sum_probs=233.9

Q ss_pred             cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCC
Q 042295            2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAP   81 (264)
Q Consensus         2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~   81 (264)
                      ||+|||||+|++.+++ +...++|+++++++.  +||+||||||||++....|+++++++++|||+|||+++|+++|+++
T Consensus         1 p~~fi~HG~p~~~~~~-~~~~~~l~~~~~~l~--~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~   77 (253)
T cd07363           1 PVLFISHGSPMLALED-NPATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAP   77 (253)
T ss_pred             CeEEeCCCCcccccCC-ChHHHHHHHHHHhcC--CCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCC
Confidence            8999999999999855 445599999999985  9999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEE
Q 042295           82 GAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLII  161 (264)
Q Consensus        82 g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iI  161 (264)
                      ||++||++|++.++++||+ ++.+.++++|||+||||++|+|+.++||||||+|...++++||+||++|++++++||+||
T Consensus        78 g~~eLa~~i~~~l~~~gi~-~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~~~v~ii  156 (253)
T cd07363          78 GSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLII  156 (253)
T ss_pred             CCHHHHHHHHHHHHhcCCC-ccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhhCCEEEE
Confidence            9999999999999999996 777778999999999999999999999999999988899999999999999999999999


Q ss_pred             EecCCcccccccccCC-CCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCCcee
Q 042295          162 GSGSATHNLKALQFDG-DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE  240 (264)
Q Consensus       162 aSG~lsH~l~~~~~~~-~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~~~~  240 (264)
                      |||++||||...+++. .++.+|+++||+|++++|+++|.++++......|.++.|||++|||+|+++++||+++.. .+
T Consensus       157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d~~~l~~~~~~~~~~~~ahp~~~h~~pll~~lGa~~~~~-~~  235 (253)
T cd07363         157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGDE-AR  235 (253)
T ss_pred             ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHhCccHHHcCCChHHHHHHHHHhcCCCCCC-cE
Confidence            9999999999877531 367899999999999999999999977554558999999999999999999999997654 88


Q ss_pred             EeccceeccceeeeEEEe
Q 042295          241 QIHQSWQLCSLSCSSYKF  258 (264)
Q Consensus       241 ~~~~~~~~~~~s~~~~~~  258 (264)
                      +++++++++++||+||+|
T Consensus       236 ~~~~~~~~~~~~~~s~~~  253 (253)
T cd07363         236 RLHDSIEYGSLSMSSYRF  253 (253)
T ss_pred             EeecceecccceEEEEEC
Confidence            899999999999999997

This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca

>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms

Probab=100.00  E-value=3.7e-61  Score=432.06  Aligned_cols=251  Identities=41%  Similarity=0.755  Sum_probs=198.3

Q ss_pred             cEEEEcCCCCCCCCCCC------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCC----C-C--CeEEEecCCCccCCCCC
Q 042295            2 ETFFISHGSPTLPIDES------LQVRHFLKAWKEQVFLQKPNSILVISAHWET----D-V--PTVNVVRQNDTIYDFYG   68 (264)
Q Consensus         2 p~~fisHG~P~~~~~~~------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~----~-~--~~i~~~~~~~~~~D~~g   68 (264)
                      |++|+|||.|++...+.      +.+.++|+++++++++.+||+|||||+||++    . .  ..|..++.++.+|||+|
T Consensus         1 p~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~g   80 (272)
T PF02900_consen    1 PAYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYG   80 (272)
T ss_dssp             -EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS---
T ss_pred             CEEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCccccccccc
Confidence            89999999888765331      3678999999999999999999999999998    2 2  34777777899999999


Q ss_pred             CccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCC----CCChHHHH
Q 042295           69 FPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP----EKDGTYHY  144 (264)
Q Consensus        69 fP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~----~~~~~~~~  144 (264)
                      ||+++|+++|+++||++||++|++.+.++||+ ++.+.++++|||+||||++|+|+.++||||||+|.    ..|+++||
T Consensus        81 fp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~  159 (272)
T PF02900_consen   81 FPPELYEIKYPAPGDPELAERIAEHLRKAGFD-VAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHY  159 (272)
T ss_dssp             --SSSBSSS--EEB-HHHHHHHHHHHHHTTS--EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHH
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHhcCCC-EEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHH
Confidence            99999999999999999999999999999996 76788999999999999999999999999999998    78999999


Q ss_pred             HHHHHhcccc---cCCeEEEEecCCcccccccccCCCCCc-chHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCC
Q 042295          145 NVGKALAPLK---DEGVLIIGSGSATHNLKALQFDGDSVV-SWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSP  220 (264)
Q Consensus       145 ~lG~aL~~~~---d~~v~iIaSG~lsH~l~~~~~~~~~~~-~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~  220 (264)
                      +||++|++++   ++||+|||||++||||...+++  ++. +++++||+|++++|++||.++|+++..+.+..+.+|| +
T Consensus       160 ~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~--~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~~~~~~-~  236 (272)
T PF02900_consen  160 RLGRALRKARESSDERVAVIASGGLSHNLRDPRPG--GYDPPWAEEFDEWILDALESGDLEALLDLDDEEPEAAAAHP-E  236 (272)
T ss_dssp             HHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTT--S---CHHHHHHHHHHCCCCH-HHHTCTTGGHCCHCHHHHGC-C
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCcccCCCccccc--chhhHhHHHHHHHHHHHHHcCChHHHhhcChhhHHHHhCCC-h
Confidence            9999999998   9999999999999999988753  333 5999999999999999999999999766777788999 9


Q ss_pred             cchHHHHHHhcccCCCCceeEeccceeccceeeeEEEec
Q 042295          221 EHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKFT  259 (264)
Q Consensus       221 ~h~~pl~~a~Ga~~~~~~~~~~~~~~~~~~~s~~~~~~~  259 (264)
                      |||+||++++||+++   .++.++.+.|++++|.+|.||
T Consensus       237 ~~~~~~~~~~GA~~~---~~~~~~~~~y~~~~~~~~~~g  272 (272)
T PF02900_consen  237 EHFRPWLVAAGAAGG---AEIKAEVLSYEPPFGWGYGFG  272 (272)
T ss_dssp             CCCHHHHHHHHTS-S---ECSCEEEEECCCEEETTEEE-
T ss_pred             hHHHHHHHHHHhcCC---CccceeeEEEeCcceeEEEeC
Confidence            999999999999986   334455688999999999986

Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.

>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=2.1e-56  Score=401.44  Aligned_cols=236  Identities=18%  Similarity=0.210  Sum_probs=203.5

Q ss_pred             EEEEcCCCCCCCCCCC----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC--CCeEEEe-----cCCCccCCCCCCcc
Q 042295            3 TFFISHGSPTLPIDES----LQVRHFLKAWKEQVFLQKPNSILVISAHWETD--VPTVNVV-----RQNDTIYDFYGFPE   71 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~--~~~i~~~-----~~~~~~~D~~gfP~   71 (264)
                      ++|++||+|++.+.+.    ..+.++|+++++++++.+||+||||||||+++  ...|+..     ..++++|||+||| 
T Consensus         5 ~~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p-   83 (271)
T cd07373           5 SAFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELP-   83 (271)
T ss_pred             EEEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCcc-
Confidence            5799999998877553    27899999999999888999999999999984  4555442     2357899999998 


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHhCCCCccc-ccCC-CCCcceeEeecccc-ccCCCCCeeeeeCCCCCChHHHHHHHH
Q 042295           72 QLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK-EDTK-RGLDHGAWTPLMLM-YPEANIPVCQLSLQPEKDGTYHYNVGK  148 (264)
Q Consensus        72 ~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~-~~~~-~~lDHG~~vPL~~l-~p~~diPVV~is~~~~~~~~~~~~lG~  148 (264)
                            |+++|+++||++|++.++++|++ +. .+.. +++|||+||||++| +|+.++||||+|++..+++++||+||+
T Consensus        84 ------~~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~~lG~  156 (271)
T cd07373          84 ------YDIRSDTALAEACVTACPEHGVH-ARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNLYHSGEITEKLGA  156 (271)
T ss_pred             ------cccCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence                  35799999999999999999995 65 4554 59999999999999 778999999999998899999999999


Q ss_pred             Hhcc-ccc--CCeEEEEecCCccccccccc--C-CCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc
Q 042295          149 ALAP-LKD--EGVLIIGSGSATHNLKALQF--D-GDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH  222 (264)
Q Consensus       149 aL~~-~~d--~~v~iIaSG~lsH~l~~~~~--~-~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h  222 (264)
                      +|++ +++  +||+|||||+|||||...++  + +.++.+|+++||+|+++++++||.++|+++   .|.++.+||++||
T Consensus       157 al~~~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd~~~ll~~---~~~~~~~~~~~~g  233 (271)
T cd07373         157 IAADAAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGDLPALREA---MPVYAKAARVDMG  233 (271)
T ss_pred             HHHHHHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCCHHHHHhc---CHHHHHHhcccCC
Confidence            9996 676  99999999999999976543  1 345789999999999999999999999976   5678899999999


Q ss_pred             hHHHHHHhcccCCCCc-eeEeccceecc
Q 042295          223 FYPLHVAMGAAGEDAK-AEQIHQSWQLC  249 (264)
Q Consensus       223 ~~pl~~a~Ga~~~~~~-~~~~~~~~~~~  249 (264)
                      |+|+++++||+++... .+++++++.+|
T Consensus       234 ~~pl~~~~Ga~~~~~~~~~~l~ye~~~G  261 (271)
T cd07373         234 FKHLHWILGALGGKFSGANVLGYGPSYG  261 (271)
T ss_pred             hHHHHHHHHhcCCCccCcceeeccCCcc
Confidence            9999999999986543 77888887766

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.

>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=100.00  E-value=1.5e-52  Score=378.05  Aligned_cols=222  Identities=19%  Similarity=0.246  Sum_probs=194.1

Q ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-CCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC
Q 042295           19 LQVRHFLKAWKEQVFLQKPNSILVISAHWETD-VPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS   97 (264)
Q Consensus        19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~   97 (264)
                      +.+.++|+++++++++.+||+||||||||.++ ...|+..++++++|||+|||+++|+++|+++||++||++|++.+.++
T Consensus        30 ~~~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~  109 (282)
T TIGR02298        30 QGAIDGHKEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSHELPHFIQDLRYDYPGNPALGQLIADEAQEH  109 (282)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCCCCChhhhCceeeCCCCHHHHHHHHHHHHHC
Confidence            47889999999999888999999999999987 57788888899999999999999999999999999999999999999


Q ss_pred             CCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCC-CCCChHHHHHHHHHhccc---ccCCeEEEEecCCccccc
Q 042295           98 GFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQ-PEKDGTYHYNVGKALAPL---KDEGVLIIGSGSATHNLK  171 (264)
Q Consensus        98 gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~-~~~~~~~~~~lG~aL~~~---~d~~v~iIaSG~lsH~l~  171 (264)
                      ||+ +.  .+.+++||||+||||++|+|+.++||||||+| ...+++++|+||++|+++   +++||+|||||++||||.
T Consensus       110 gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH~L~  188 (282)
T TIGR02298       110 GVK-TLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDGRVAVLASGSLSHRFW  188 (282)
T ss_pred             CCc-eeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEecccceecC
Confidence            995 65  46789999999999999999999999999998 457999999999999999   789999999999999998


Q ss_pred             cccc-CCCCCcchHHHH----HHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC---CCceeEec
Q 042295          172 ALQF-DGDSVVSWASEF----DCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE---DAKAEQIH  243 (264)
Q Consensus       172 ~~~~-~~~~~~~~~~~F----D~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~---~~~~~~~~  243 (264)
                      ..+. +++++.+|+.+|    |+.+++++++||.++|+++..   ........+|+++++++++||.+.   ..+.++++
T Consensus       189 ~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd~~~l~~~~~---~~~~~~age~g~~~~~~l~Gal~~~~~~~~~~~l~  265 (282)
T TIGR02298       189 DNKDLAPEGMTTIASEFNRQVDLRVLELWRERDYREFCAMLP---DYAVKCNGEGGMHDTVMLFGALGWDDYDGEVEVIT  265 (282)
T ss_pred             cccCCCcccCCchhhHHHHHHHHHHHHHHHcCCHHHHHHhCH---HHHHhcCcccChHHHHHHHhccCCCCccccceEec
Confidence            7642 255677897775    888999999999999999743   233333568999999999999952   24566665


Q ss_pred             c
Q 042295          244 Q  244 (264)
Q Consensus       244 ~  244 (264)
                      +
T Consensus       266 ~  266 (282)
T TIGR02298       266 E  266 (282)
T ss_pred             c
Confidence            3

This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.

>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=100.00  E-value=3.6e-52  Score=375.67  Aligned_cols=253  Identities=18%  Similarity=0.204  Sum_probs=213.2

Q ss_pred             cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-CCeEEEecCCCccCCCCCCccccccccCCC
Q 042295            2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETD-VPTVNVVRQNDTIYDFYGFPEQLYKLKYPA   80 (264)
Q Consensus         2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~   80 (264)
                      |++|++||.++... ..+++.++|+++++++.+.+||+||||||||++. ...|+..+++.++|||+|||+++|+++|++
T Consensus        12 P~i~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~~   90 (280)
T cd07370          12 PTMMLSEQPGPNKG-CRQAAIDGLKEIGRRARELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNELPHFIADMPYDY   90 (280)
T ss_pred             CeEEecCCCCCccc-hHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeEeccCCCCceecCCCCCchhcCCCCCC
Confidence            67889998655422 2257899999999999878999999999999885 577888888899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhccc---cc
Q 042295           81 PGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPL---KD  155 (264)
Q Consensus        81 ~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~---~d  155 (264)
                      +||++||++|++.+.+.|++ +.  .+.++++|||+||||++|+|+.++||||||+|...+++++++||++|+++   ++
T Consensus        91 ~gd~ela~~i~~~~~~~g~~-~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG~al~~~~~~~~  169 (280)
T cd07370          91 AGDPELAHLIAEEATEHGVK-TLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAIAASD  169 (280)
T ss_pred             CCCHHHHHHHHHHHHHCCCC-eeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999996 44  56789999999999999999999999999999889999999999999998   57


Q ss_pred             CCeEEEEecCCcccccccccCCC------CCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCC--CcchHHHH
Q 042295          156 EGVLIIGSGSATHNLKALQFDGD------SVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPS--PEHFYPLH  227 (264)
Q Consensus       156 ~~v~iIaSG~lsH~l~~~~~~~~------~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~--~~h~~pl~  227 (264)
                      +||+|||||++||+|....+...      ...+|+++||+|++++|+++|.++|+++..  +..+.++|+  .+||++++
T Consensus       170 ~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD~~~L~~~~~--~~~~~~~g~~g~~~~l~l~  247 (280)
T cd07370         170 RRVALLASGSLSHRFWPNRELEAHEDPFTISSPFNRQVDLRVLELWKEGRHAEFLDMLP--DYARRCAGEGGMHDTAMLF  247 (280)
T ss_pred             CCEEEEEeccccccCccCCCccccccccccCChhHHHHHHHHHHHHHcCCHHHHHHhCH--HHHHHhCccCChHHHHHHH
Confidence            79999999999999865432111      246899999999999999999999999842  455578887  78999999


Q ss_pred             HHhcccCCCCceeEeccceeccceeeeEEEe
Q 042295          228 VAMGAAGEDAKAEQIHQSWQLCSLSCSSYKF  258 (264)
Q Consensus       228 ~a~Ga~~~~~~~~~~~~~~~~~~~s~~~~~~  258 (264)
                      .++|+.+.+.+.+++.+-..-.+++|..=.|
T Consensus       248 ~alG~~~~~~~~~~~~~ye~~~g~g~~v~~~  278 (280)
T cd07370         248 GALGWDDYDGKAEVVTEYFPSSGTGQVNVWF  278 (280)
T ss_pred             hhhCccccccceeEecccCCCCccceEEEEe
Confidence            9999987777777766333334555554444

3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.

>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=100.00  E-value=4.5e-51  Score=366.88  Aligned_cols=234  Identities=22%  Similarity=0.273  Sum_probs=193.9

Q ss_pred             EEEEcCCCCCCCCCCC---------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCC-eEEEecCCCccCCCCCCccc
Q 042295            3 TFFISHGSPTLPIDES---------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVP-TVNVVRQNDTIYDFYGFPEQ   72 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~---------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~-~i~~~~~~~~~~D~~gfP~~   72 (264)
                      ++++||  ||+++++.         .+|.++|+++++++++.+||+||||||||++... .+.........+|++|||+.
T Consensus         3 a~~~pH--~P~i~~~~~~~~~~~~~~~t~~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~   80 (272)
T cd07362           3 AMLAPH--VPSMCHEENPPENQGCLVGAIKGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL   80 (272)
T ss_pred             ccccCC--CCEeecCCCCCchhhhHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCch
Confidence            578899  88776442         1367999999999988899999999999999863 23333333457999999999


Q ss_pred             cccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCCC-CCChHHHHHHHHH
Q 042295           73 LYKLKYPAPGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP-EKDGTYHYNVGKA  149 (264)
Q Consensus        73 ~y~~~y~~~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~-~~~~~~~~~lG~a  149 (264)
                      +|+++|+++||++||++|++.+.++||+ ++  .+.++++|||+||||++|+|+.++||||||+|+ ..++++||+||++
T Consensus        81 ~~~~~y~~~g~~~LA~~i~~~l~~~Gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~a  159 (272)
T cd07362          81 ISDVPYDYPGDPELGRLLVEEGQEAGLR-VKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEV  159 (272)
T ss_pred             hhccccCCCCCHHHHHHHHHHHHHcCCc-eeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999996 65  356899999999999999999999999999998 6899999999976


Q ss_pred             hccc-c--cCCeEEEEecCCccccccccc---CCCCC-cchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc
Q 042295          150 LAPL-K--DEGVLIIGSGSATHNLKALQF---DGDSV-VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH  222 (264)
Q Consensus       150 L~~~-~--d~~v~iIaSG~lsH~l~~~~~---~~~~~-~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h  222 (264)
                      |+++ +  ++||+|||||++||||+...+   +..++ .+|+++||+|+++++++||.++|+++..+  ....|-+ +|+
T Consensus       160 i~~al~~~~~rv~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~--~~~~A~~-e~g  236 (272)
T cd07362         160 IGKALLESDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQFQEACNMLPQ--YARAAGV-ESG  236 (272)
T ss_pred             HHHHHHhhCCCEEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHcCCHHHHHHhCHH--HHHHhcC-Ccc
Confidence            6664 1  789999999999999987664   22333 47999999999999999999999999533  3334444 899


Q ss_pred             hHHHHHHhcccCCCC-ceeEe
Q 042295          223 FYPLHVAMGAAGEDA-KAEQI  242 (264)
Q Consensus       223 ~~pl~~a~Ga~~~~~-~~~~~  242 (264)
                      ++++++++|++.... +.+++
T Consensus       237 ~~~~~~~~g~~~g~~~~~~v~  257 (272)
T cd07362         237 GRHLTVMLGVMQGWGKVAELH  257 (272)
T ss_pred             cHHHHHHHHHhcCCcccceec
Confidence            999999999997543 34443

This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame

>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=4e-51  Score=366.67  Aligned_cols=242  Identities=18%  Similarity=0.177  Sum_probs=196.8

Q ss_pred             EEEcCCCCCCCCCCC----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEe-cCCCccCCCCCCccccccccC
Q 042295            4 FFISHGSPTLPIDES----LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVV-RQNDTIYDFYGFPEQLYKLKY   78 (264)
Q Consensus         4 ~fisHG~P~~~~~~~----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~-~~~~~~~D~~gfP~~~y~~~y   78 (264)
                      .|++||+|++.+.+.    .++.++|+++++++.+.+||+||||||||++..+.+++. +..+..++.++|| ++|+++|
T Consensus         3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~y   81 (268)
T cd07371           3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWP-EFGRLDY   81 (268)
T ss_pred             eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccc-hhceeee
Confidence            589999998886542    267899999999998889999999999999987644443 2345556667886 7889999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCCcceeEeeccccccCCCCCeeeeeCCCC-CChHHHHHHHHHhccc-c
Q 042295           79 PAPGAPDLAKRVKELLRTSGFNHVKE--DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE-KDGTYHYNVGKALAPL-K  154 (264)
Q Consensus        79 ~~~g~~elA~~i~~~l~~~gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~-~~~~~~~~lG~aL~~~-~  154 (264)
                      +++||++||++|++.++++||+ +..  +.++++|||+||||++|+|+.++||||+|+|+. .|+++||+||++|+++ +
T Consensus        82 ~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~  160 (268)
T cd07371          82 SINVDVELAEACVEEGRKAGLV-TRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATR  160 (268)
T ss_pred             cCCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999995 654  678999999999999999999999999999876 7999999999999864 7


Q ss_pred             c--CCeEEEEecCCcccccccccCCC---CCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHH
Q 042295          155 D--EGVLIIGSGSATHNLKALQFDGD---SVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVA  229 (264)
Q Consensus       155 d--~~v~iIaSG~lsH~l~~~~~~~~---~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a  229 (264)
                      +  +||+|||||++||||...+.+.+   ++.+++++||+++++.+++||.++|+++..+.......+++.+|+++++.+
T Consensus       161 ~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd~~~l~~~~~~~~~~a~~~~g~~~~~~l~ga  240 (268)
T cd07371         161 DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGDMSALFELLPQYIKEARADMGSKAFTWMLGA  240 (268)
T ss_pred             HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccccHHHHHHHHHh
Confidence            5  89999999999999976553211   456999999999999999999999999864433333456666777777777


Q ss_pred             hcccCCCCceeEeccceecc
Q 042295          230 MGAAGEDAKAEQIHQSWQLC  249 (264)
Q Consensus       230 ~Ga~~~~~~~~~~~~~~~~~  249 (264)
                      +|..+  .+++++.++..+|
T Consensus       241 l~~~~--~~~~v~~Ye~~~G  258 (268)
T cd07371         241 MGYPE--LAAEVHGYGTVYG  258 (268)
T ss_pred             cCCcc--cCccEeeccCCCc
Confidence            76653  3566776554444

This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.

>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases

Probab=100.00  E-value=2e-49  Score=353.56  Aligned_cols=227  Identities=19%  Similarity=0.261  Sum_probs=191.8

Q ss_pred             EEEEcCCCCCCCCCC--ChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCC
Q 042295            3 TFFISHGSPTLPIDE--SLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPA   80 (264)
Q Consensus         3 ~~fisHG~P~~~~~~--~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~   80 (264)
                      ++|||||+|++....  .+++.+++++.+.+  +.+||+||||||||.+....++++.. +.+||++|||.++|+.+|  
T Consensus         2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~--~~~Pd~IvvispH~~~~~~~~~i~~~-~~~~g~~~~p~~~~~~~~--   76 (256)
T cd07952           2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAK--NDDPDVLVVITPHGIRLSGHVAVILT-EYLEGTLRTNKVLIRSKY--   76 (256)
T ss_pred             eEEcCCCCccCCCCCcchHHHHHHHHHHHHH--hcCCCEEEEECCCcccccCceEEeec-CeeeeecccCCCceEEec--
Confidence            589999998887633  24667788886655  57899999999999987666766654 449999999999988777  


Q ss_pred             CCCHHHHHHHHHHHHhCCCCcccc---------cCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhc
Q 042295           81 PGAPDLAKRVKELLRTSGFNHVKE---------DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALA  151 (264)
Q Consensus        81 ~g~~elA~~i~~~l~~~gid~~~~---------~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~  151 (264)
                      |||++||++|++.+.++|++ +..         ...+++|||+||||+||+|.   ||||+|++...+++++++||++|+
T Consensus        77 ~~d~ela~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~---pvV~is~~~~~~~~~~~~lG~aL~  152 (256)
T cd07952          77 PNDRELANEIYKSARADGIP-VLGINFATSSGDNSDFPLDWGELIPLSFLKKR---PIVLITPPRLLPREELVEFGRALG  152 (256)
T ss_pred             CCCHHHHHHHHHHHHHcCCc-eeeccchhhccccCCCCCCccccccHhhCCCC---CeEEEccccCCCHHHHHHHHHHHH
Confidence            69999999999999999984 542         23688999999999999985   999999986679999999999999


Q ss_pred             cc---ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHH
Q 042295          152 PL---KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHV  228 (264)
Q Consensus       152 ~~---~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~  228 (264)
                      ++   +++||+|||||++|||+....  +.++.+|+++||+|++++|+++|.++|+++.+.    +.+|++.|||+|+++
T Consensus       153 ~~~~~~~~~vliIaSGdlSH~l~~~~--p~~~~~~a~~fD~~~~~~l~~~d~~~l~~~~~~----~~~~a~~cg~~pl~~  226 (256)
T cd07952         153 KALEGYEKRVAVIISADHAHTHDPDG--PYGYSPDAAEYDAAIVEAIENNDFEALLELDDE----LIEKAKPDSYWQLLI  226 (256)
T ss_pred             HHHHhcCCcEEEEEecCccccCCCCC--CCCCCcchHHHHHHHHHHHHcCCHHHHHhCCHH----HHHHhhhcCHHHHHH
Confidence            98   577999999999999997543  566789999999999999999999999998432    678889999999999


Q ss_pred             HhcccCCC-CceeEecc
Q 042295          229 AMGAAGED-AKAEQIHQ  244 (264)
Q Consensus       229 a~Ga~~~~-~~~~~~~~  244 (264)
                      ++|++... .+++++..
T Consensus       227 ~lga~~~~~~~~~vl~Y  243 (256)
T cd07952         227 LAGILESSPRKSKVLYY  243 (256)
T ss_pred             HHhhccCCCccceEEEc
Confidence            99998643 46677654

This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.

>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases

Probab=100.00  E-value=1.1e-49  Score=355.06  Aligned_cols=247  Identities=21%  Similarity=0.265  Sum_probs=210.8

Q ss_pred             EEEEcCCCCCCCCCCCh--HHHHHHHHHHHHhhcCCCCEEEEEcCCCC--CCCCeEEEecCCCccCCCCCCccccccccC
Q 042295            3 TFFISHGSPTLPIDESL--QVRHFLKAWKEQVFLQKPNSILVISAHWE--TDVPTVNVVRQNDTIYDFYGFPEQLYKLKY   78 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~~--~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~--~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y   78 (264)
                      ++|+|||+|+...+...  ...++|+++++++.+.+||+||||||||.  +....|+..+..+++|||    +.+|++.|
T Consensus         2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~   77 (260)
T cd07320           2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSG----QWGRRPVY   77 (260)
T ss_pred             CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceecccccc----ccCCCCCc
Confidence            58999999988774422  11246888999887789999999999999  455667777788899997    44677889


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccccCC-CCCcceeEeeccccccC-CCCCeeeeeCCCCC-ChHHHHHHHHHhcccc-
Q 042295           79 PAPGAPDLAKRVKELLRTSGFNHVKEDTK-RGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEK-DGTYHYNVGKALAPLK-  154 (264)
Q Consensus        79 ~~~g~~elA~~i~~~l~~~gid~~~~~~~-~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~-~~~~~~~lG~aL~~~~-  154 (264)
                      +++||++||++|++.+.+ |++ +..... +++|||+||||.+|+|+ .++|||||+++... ++++|++||++|++++ 
T Consensus        78 ~~~~d~ela~~l~~~~~~-~~~-~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~  155 (260)
T cd07320          78 DVKGDPDLAWEIAEELIK-EIP-VTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVE  155 (260)
T ss_pred             CCCCCHHHHHHHHHHHHh-cCC-EEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999988 995 654444 69999999999999999 89999999999665 9999999999999998 


Q ss_pred             --cCCeEEEEecCCcccccccccC-CCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhc
Q 042295          155 --DEGVLIIGSGSATHNLKALQFD-GDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMG  231 (264)
Q Consensus       155 --d~~v~iIaSG~lsH~l~~~~~~-~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~G  231 (264)
                        ++||+|||||++|||+...++. ..+..+|+++||++++++|+++|.++|+++.   |..+.+|++.||++||++++|
T Consensus       156 ~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d~~~l~~~~---~~~~~~~~~~~g~~~~~~~~g  232 (260)
T cd07320         156 PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELDPVEFKNMH---QYLTISNATPCGFHPLLILLG  232 (260)
T ss_pred             hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCCHHHHhhcC---hHHHhcCCCccCHHHHHHHHH
Confidence              8899999999999999776531 1345689999999999999999999999873   567889999999999999999


Q ss_pred             ccCCCCc-eeEeccceeccceeeeEEEe
Q 042295          232 AAGEDAK-AEQIHQSWQLCSLSCSSYKF  258 (264)
Q Consensus       232 a~~~~~~-~~~~~~~~~~~~~s~~~~~~  258 (264)
                      |+++... .+++++.+..+++||.+..|
T Consensus       233 a~~~~~~~~~~~~~~~~~~~vg~~~~~~  260 (260)
T cd07320         233 ALDGKERKDLFTVYGIPSSSTGYAAAIL  260 (260)
T ss_pred             hcCCCccceEEeecCCCCCCceEEEEEC
Confidence            9986554 67889998889999998876

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class

>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol

Probab=100.00  E-value=9.7e-46  Score=331.68  Aligned_cols=222  Identities=22%  Similarity=0.295  Sum_probs=177.7

Q ss_pred             EEEEcCCCCCCCCCC-C---hHHHHHHHHHHHHhhcCCCCEEEEEcC-CCCCC----CCeEEEecCCCccCCCC--CCcc
Q 042295            3 TFFISHGSPTLPIDE-S---LQVRHFLKAWKEQVFLQKPNSILVISA-HWETD----VPTVNVVRQNDTIYDFY--GFPE   71 (264)
Q Consensus         3 ~~fisHG~P~~~~~~-~---~~~~~~l~~l~~~l~~~~Pd~IVviS~-Hw~~~----~~~i~~~~~~~~~~D~~--gfP~   71 (264)
                      ++++||  +++.-.. .   +++.++|+++++++++.+||+|||||| ||.+.    .+.++++... .++||+  |||+
T Consensus         7 ~~~~~H--~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~-~~~~~~~~g~p~   83 (268)
T cd07367           7 AAATSH--ILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTAD-SYTPFGDMDIPR   83 (268)
T ss_pred             EEecCC--cCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeecc-ccccCCcCCCCc
Confidence            578999  5443211 1   367899999999998889999999999 55542    3444444332 233554  8885


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC----ChHHHHHHH
Q 042295           72 QLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK----DGTYHYNVG  147 (264)
Q Consensus        72 ~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~----~~~~~~~lG  147 (264)
                      ..      ++||++||++|++.+.++||| +..+.++++|||+||||++|+|+.++||||||+|...    ++++||+||
T Consensus        84 ~~------~~gd~~LA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG  156 (268)
T cd07367          84 EL------FPGHREFARAFVRQAAEDGFD-LAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALG  156 (268)
T ss_pred             cc------CCCCHHHHHHHHHHHHHcCCC-eeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHH
Confidence            43      589999999999999999996 7777889999999999999999999999999998775    589999999


Q ss_pred             HHhccc------ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCc
Q 042295          148 KALAPL------KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPE  221 (264)
Q Consensus       148 ~aL~~~------~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~  221 (264)
                      ++|+++      +++||+|||||+|||||....     ..+++++||+|+++++++||.++|++++.+   ......++|
T Consensus       157 ~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~-----~~~~~~efD~~i~~~l~~gd~~~L~~~~~~---~~~~~ag~~  228 (268)
T cd07367         157 KVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPR-----HGEVNEAFDRMFLDLLEGGNGERLAGMGND---EILDQAGNG  228 (268)
T ss_pred             HHHHHHHHhcCCCCCcEEEEEcccccCCCCCCc-----ccccCHHHHHHHHHHHHcCCHHHHHhCCHH---HHHHhCccc
Confidence            999999      789999999999999996532     236889999999999999999999999532   123344577


Q ss_pred             chH--HHHHHhcccCCCCceeEec
Q 042295          222 HFY--PLHVAMGAAGEDAKAEQIH  243 (264)
Q Consensus       222 h~~--pl~~a~Ga~~~~~~~~~~~  243 (264)
                      ++.  +|++++||.++.. .+++.
T Consensus       229 g~e~~~w~~~~GAl~~~~-~~v~~  251 (268)
T cd07367         229 GLEIVNWIMAAAAVEAQS-GEKVY  251 (268)
T ss_pred             chHHHHHHHHHhhcCCCC-ccEEE
Confidence            777  9999999997643 55544

CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.

>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes

Probab=100.00  E-value=5.6e-45  Score=327.28  Aligned_cols=225  Identities=22%  Similarity=0.309  Sum_probs=183.2

Q ss_pred             EEEEcCCCCCCCCCCC--------hHHHHHHHHHHHHhhcCCCCEEEEEcCC-----CCCCCC--eEEEecCCCccCCCC
Q 042295            3 TFFISHGSPTLPIDES--------LQVRHFLKAWKEQVFLQKPNSILVISAH-----WETDVP--TVNVVRQNDTIYDFY   67 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~H-----w~~~~~--~i~~~~~~~~~~D~~   67 (264)
                      +++.||  ||+++++.        +++.++|+++++++++.+||+|||||+|     |.+..+  +|++.+.....++  
T Consensus         5 ~~~~~H--~P~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~~~--   80 (271)
T cd07359           5 GIGASH--APGLTGAADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGPDE--   80 (271)
T ss_pred             EEecCC--CCcccCCCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCCcc--
Confidence            467899  88776442        3678999999999988999999999995     434333  4554444332222  


Q ss_pred             CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC----ChHHH
Q 042295           68 GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK----DGTYH  143 (264)
Q Consensus        68 gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~----~~~~~  143 (264)
                      ++   +|..+|+++||++||++|.+.+.+.|++ ++.+.++++|||+||||++|+|+.++||||||+|...    ++++|
T Consensus        81 ~~---~~~~~~~~~~d~elA~~i~~~~~~~g~~-~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~~~  156 (271)
T cd07359          81 GW---LGIPRAPVPGDADLARHLLAGLVEDGFD-VAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLRRC  156 (271)
T ss_pred             cc---ccCcCCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHHHH
Confidence            22   5677899999999999999999999995 7777789999999999999999999999999998754    78999


Q ss_pred             HHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCC
Q 042295          144 YNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHP  218 (264)
Q Consensus       144 ~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp  218 (264)
                      ++||++|+++     ||+||+|||||++|||+.....     .+++++||++++++|+++|.++|+++. ..+..+.+++
T Consensus       157 ~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~~-----g~~~~~fD~~~~~~l~~~d~~~l~~~~-~~~~~~~ag~  230 (271)
T cd07359         157 YALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPRH-----GEINEEFDREFLDLLERGDLEALLKAT-TEETLEEAGN  230 (271)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCccc-----cccCHHHHHHHHHHHHhCCHHHHHhcC-HHHHHHHcCC
Confidence            9999999997     5889999999999999976432     267899999999999999999999883 3455567777


Q ss_pred             CCcchHHHHHHhcccCCCCceeEe
Q 042295          219 SPEHFYPLHVAMGAAGEDAKAEQI  242 (264)
Q Consensus       219 ~~~h~~pl~~a~Ga~~~~~~~~~~  242 (264)
                      ...||+||++++||++... ++++
T Consensus       231 ~~~e~~~~~~~~GA~~~~~-~~~~  253 (271)
T cd07359         231 GGHEILNWIAAAGALGEAP-GEVL  253 (271)
T ss_pred             CcHHHHHHHHHHHhhccCc-ccee
Confidence            6677999999999987543 4443

This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres

>PRK03881 hypothetical protein; Provisional

Probab=100.00  E-value=6.9e-44  Score=341.82  Aligned_cols=245  Identities=19%  Similarity=0.283  Sum_probs=210.4

Q ss_pred             EEEEcCCCCCCCCCCC--------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccc
Q 042295            3 TFFISHGSPTLPIDES--------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLY   74 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y   74 (264)
                      ++++||  ||+++++.        +++.++|+++++++.+.+||+||||||||......+.+...+...+||+||+.  |
T Consensus         6 a~~~PH--~P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~--~   81 (467)
T PRK03881          6 AYLMPH--PPIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGA--P   81 (467)
T ss_pred             EEEcCC--CCEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCC--C
Confidence            678999  67777642        47889999999999888999999999999987788888888899999999974  7


Q ss_pred             cccCCCCCCHHHHHHHHHHHHhCCCCcccc---------cCCCCCcceeEeeccccccC-CCCCeeeeeCCCCCChHHHH
Q 042295           75 KLKYPAPGAPDLAKRVKELLRTSGFNHVKE---------DTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEKDGTYHY  144 (264)
Q Consensus        75 ~~~y~~~g~~elA~~i~~~l~~~gid~~~~---------~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~~~~~~~  144 (264)
                      +++|+++||++||++|++.++++||+ +..         +..+++|||+||||.||+|+ .++|||||+++ ..++++|+
T Consensus        82 ~v~~~~~~d~eLA~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~~-~~~~~~~~  159 (467)
T PRK03881         82 EVSFSFKNDLELVEEIAEEAKKEGIP-VVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISYG-GLSPEELY  159 (467)
T ss_pred             CccccCCCCHHHHHHHHHHHHHcCCc-eEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeCC-CCCHHHHH
Confidence            89999999999999999999999995 654         56789999999999999998 79999999996 77999999


Q ss_pred             HHHHHhcccc---cCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCc
Q 042295          145 NVGKALAPLK---DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPE  221 (264)
Q Consensus       145 ~lG~aL~~~~---d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~  221 (264)
                      +||++|++++   ++||+|||||++|||+....  +.++.+++++||++++++|+++|.++|+++..+    ...+++.|
T Consensus       160 ~lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~--p~g~~~~a~~fD~~ii~~i~~gD~~~L~~~~~~----~~~~a~~c  233 (467)
T PRK03881        160 KFGMAIREAAEELGRKVVLIASGDLSHRLTPDG--PYGYAPEGPEFDRAIVELLSKGDVEGLLSIDEE----LIEEAGEC  233 (467)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCcccccCCCCC--CCCCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHhhhhc
Confidence            9999999986   45999999999999996542  556678999999999999999999999998432    34566789


Q ss_pred             chHHHHHHhcccCCC-CceeEeccceeccceeeeEEEecc
Q 042295          222 HFYPLHVAMGAAGED-AKAEQIHQSWQLCSLSCSSYKFTA  260 (264)
Q Consensus       222 h~~pl~~a~Ga~~~~-~~~~~~~~~~~~~~~s~~~~~~~~  260 (264)
                      ||+||++++|++... .+++++.....+| ++|.++.|..
T Consensus       234 G~~p~~~~lga~~~~~~~~~~l~Y~~~~g-VGYa~~~f~~  272 (467)
T PRK03881        234 GLRSVLIMLGALDGYSVKSEVLSYEGPFG-VGYGVARFEP  272 (467)
T ss_pred             CHHHHHHHHHhccccCCCceEEEEeCCcc-cceEEEEEec
Confidence            999999999998743 3577776554555 8899999965

>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=1.9e-43  Score=320.01  Aligned_cols=236  Identities=20%  Similarity=0.227  Sum_probs=185.8

Q ss_pred             EEEEcCCCCCCCCCCC------------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCC-
Q 042295            3 TFFISHGSPTLPIDES------------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGF-   69 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~------------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gf-   69 (264)
                      +.+++| .|++++.+.            ..+.++++++++++++.+||+||||||||.++.. ..+...++..++|.+| 
T Consensus         6 a~~~pH-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~~~~   83 (294)
T cd07372           6 GFLAPH-PPHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSVDPI   83 (294)
T ss_pred             EEecCC-CCeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCcccccccccc
Confidence            467889 455553221            1367999999999999999999999999998754 3334445556666654 


Q ss_pred             -ccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCCC-------CCC
Q 042295           70 -PEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP-------EKD  139 (264)
Q Consensus        70 -P~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~-------~~~  139 (264)
                       | ++|+++|+++||++||++|.+.++++||+ +.  .+.+++||||+||||+||+|+.++|||+||++.       ..+
T Consensus        84 ~p-~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~-~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~  161 (294)
T cd07372          84 FP-NLFRYDFSMNVDVELAEACCEEGRKAGLV-TKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEG  161 (294)
T ss_pred             cc-cceeeccCCCCCHHHHHHHHHHHHHCCCC-eeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCC
Confidence             4 58888999999999999999999999996 64  367899999999999999999999999999873       235


Q ss_pred             hHHHHHHHHHhccc-c--cCCeEEEEecCCccccccccc-CCCCCcc------hHHHHHHHHHHHHHcCCHHHHhcchhh
Q 042295          140 GTYHYNVGKALAPL-K--DEGVLIIGSGSATHNLKALQF-DGDSVVS------WASEFDCWLKDALLQGRYEDVNHYEEK  209 (264)
Q Consensus       140 ~~~~~~lG~aL~~~-~--d~~v~iIaSG~lsH~l~~~~~-~~~~~~~------~~~~FD~~~~~~l~~gd~~~l~~~~~~  209 (264)
                      ++++|+||++|+++ +  ++||+|||||+|||++..... ++.++.+      .+++||+.+++.+++||.++|+++..+
T Consensus       162 ~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd~~~l~~~~~~  241 (294)
T cd07372         162 LGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGRMKEVFRLLPQ  241 (294)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCCHHHHHhcCHH
Confidence            89999999999994 4  678999999999999743221 2333333      789999999999999999999999543


Q ss_pred             CCcchhcCCCCcchHHHHHHhcccCCC-CceeEeccc
Q 042295          210 APYGKMAHPSPEHFYPLHVAMGAAGED-AKAEQIHQS  245 (264)
Q Consensus       210 ~p~~~~ahp~~~h~~pl~~a~Ga~~~~-~~~~~~~~~  245 (264)
                        ....|. .+|++.++++++||++.. .+.+++..+
T Consensus       242 --~~~~A~-ge~g~~~~~~~~ga~~~~~~~~~vlsYe  275 (294)
T cd07372         242 --FIEEAF-AEVKSGAFTWMHAAMQYPELAAELHGYG  275 (294)
T ss_pred             --HHHHhc-cccchHHHHHHHHhhcCCCcCceEeecc
Confidence              223333 489999999999998643 467766543

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin

>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional

Probab=100.00  E-value=2.1e-43  Score=329.73  Aligned_cols=221  Identities=22%  Similarity=0.286  Sum_probs=182.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCeEEEecCCCcc-CCC-CCCccccccccCCCCCCHHHHHHHHH
Q 042295           20 QVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPTVNVVRQNDTI-YDF-YGFPEQLYKLKYPAPGAPDLAKRVKE   92 (264)
Q Consensus        20 ~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~i~~~~~~~~~-~D~-~gfP~~~y~~~y~~~g~~elA~~i~~   92 (264)
                      +..++++++++++++.+||+|||| ++|...    ..++|+++...... +|+ +| |.    -..++||+|+||++|++
T Consensus       179 ~v~~~~~~~r~~l~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~p~d~g~G-~~----~v~~~pG~peLA~~I~~  253 (444)
T PRK13372        179 KLFAGYDLSREWAKEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFPPADEGWG-PR----PVPDVIGHPELAAHIAQ  253 (444)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEEccccCCCcccCC-CC----CCCCCCCCHHHHHHHHH
Confidence            567889999999999999999999 558553    34556555443333 564 22 11    12468999999999999


Q ss_pred             HHHhCCCCcccccCCCCCcceeEeeccccccCC---CCCeeeeeCCCCC----ChHHHHHHHHHhccccc------CCeE
Q 042295           93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA---NIPVCQLSLQPEK----DGTYHYNVGKALAPLKD------EGVL  159 (264)
Q Consensus        93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~---diPVV~is~~~~~----~~~~~~~lG~aL~~~~d------~~v~  159 (264)
                      .|.++||| ++.+.++++|||+||||.+|+|++   +|||||||+|+..    |+++||+||++|+++++      +||+
T Consensus       254 ~L~~~GfD-~a~~~erglDHG~~vPL~lm~P~ad~~~IPVVPvsvN~~~~Plps~~R~~~LG~AL~~lres~~~D~erVl  332 (444)
T PRK13372        254 SVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVNVVQYPVPSGRRCYELGQAIRRAIDKWDADPLNVQ  332 (444)
T ss_pred             HHHhcCCC-hhhccCCCCCchhhhhHHHhCCcccCCCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHhhcccccCCEE
Confidence            99999997 788899999999999999999996   4999999999884    99999999999999986      9999


Q ss_pred             EEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCCc-
Q 042295          160 IIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAK-  238 (264)
Q Consensus       160 iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~~-  238 (264)
                      |||||++||||...+.     ..|+++||+|++++|++ |.++|.+|+ ..+.++.+||+.+|++||++++||+++..+ 
T Consensus       333 IIGSGGLSHnL~~~~~-----g~in~eFD~~~ld~L~~-D~e~L~~~~-~~~~~~~aG~~g~El~~Wiva~GAl~~~~~~  405 (444)
T PRK13372        333 IWGTGGMSHQLQGPRA-----GLINEEFDNAFLDHLIA-DPEAAAEIP-HIDYVDEAGSEGIELVDWLIARGAMDDQAGG  405 (444)
T ss_pred             EEecCcccCCCCCCCC-----ccchHHHHHHHHHHHHh-CHHHHHcCc-ccHHHHHcCCchHHHHHHHHHHhhhhccccc
Confidence            9999999999985432     26899999999999997 999999994 578899999999999999999999965332 


Q ss_pred             --------------eeEeccceeccceeee
Q 042295          239 --------------AEQIHQSWQLCSLSCS  254 (264)
Q Consensus       239 --------------~~~~~~~~~~~~~s~~  254 (264)
                                    .+.+|+.|. --.|++
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~y~-~p~s~t  434 (444)
T PRK13372        406 ASPDAAADGATGRPPKVNHRFYH-VPASNT  434 (444)
T ss_pred             cccccccccccccccceeeccee-cccccc
Confidence                          467887763 335555

>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate

Probab=100.00  E-value=2.5e-43  Score=317.03  Aligned_cols=206  Identities=21%  Similarity=0.294  Sum_probs=175.8

Q ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCCC----CCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHH
Q 042295           19 LQVRHFLKAWKEQVFLQKPNSILVI-SAHWETD----VPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKEL   93 (264)
Q Consensus        19 ~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~~----~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~   93 (264)
                      ..+.++++++++++++.+||+|||| |+|...+    .+.+.++..+....++++|...-  ++ +++||++||++|++.
T Consensus        31 ~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~--~~-~~~g~~~LA~~i~~~  107 (277)
T cd07364          31 KPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGYGPRP--VP-DVQGHPDLAWHIAQS  107 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCccccCCCC--CC-CCCCCHHHHHHHHHH
Confidence            3778999999999999999999999 8896543    45777777666676776664221  12 679999999999999


Q ss_pred             HHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCC----CChHHHHHHHHHhccc-----ccCCeEEE
Q 042295           94 LRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPE----KDGTYHYNVGKALAPL-----KDEGVLII  161 (264)
Q Consensus        94 l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~----~~~~~~~~lG~aL~~~-----~d~~v~iI  161 (264)
                      +.++||| +....++++|||+||||++|+|+.+   +||||+|+|..    .|+++||+||++|+++     ||+||+||
T Consensus       108 ~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~~~rd~rV~iI  186 (277)
T cd07364         108 LILDDFD-MTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLKVAIW  186 (277)
T ss_pred             HHHcCCC-EEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEE
Confidence            9999996 7777889999999999999999765   78999999877    5899999999999999     78999999


Q ss_pred             EecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC
Q 042295          162 GSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE  235 (264)
Q Consensus       162 aSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~  235 (264)
                      |||+|||||....   .+  .++++||+|+++++++ |.++|++++ ..+..+.+|+...|++||++++||.+.
T Consensus       187 aSG~lSH~L~~~~---~g--~~~~eFD~~i~~~l~~-d~~~l~~~~-~~~~~~~ag~~g~e~~~wi~~~GAl~~  253 (277)
T cd07364         187 GTGGMSHQLQGER---AG--LINKEFDNRFLDKLIS-DPEGLAKMP-HIEYLREAGSEGIELVMWLIMRGALDE  253 (277)
T ss_pred             ecCccccCCCCCC---cc--CchHHHHHHHHHHHHh-CHHHHHcCC-chHHHHHcCccchhHHHHHHHHhhhcc
Confidence            9999999997643   22  4589999999999997 999999995 346678899988899999999999965

Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.

>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase

Probab=100.00  E-value=5.5e-43  Score=314.61  Aligned_cols=200  Identities=21%  Similarity=0.305  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHhhcCCCCEEEEEc-CC----CCCCCCeEEEecCCCccCC--CCCCccccccccCCCCCCHHHHHHHHHH
Q 042295           21 VRHFLKAWKEQVFLQKPNSILVIS-AH----WETDVPTVNVVRQNDTIYD--FYGFPEQLYKLKYPAPGAPDLAKRVKEL   93 (264)
Q Consensus        21 ~~~~l~~l~~~l~~~~Pd~IVviS-~H----w~~~~~~i~~~~~~~~~~D--~~gfP~~~y~~~y~~~g~~elA~~i~~~   93 (264)
                      ..++++++++++++.+||+||||| ||    |.+..+.|+++..++...|  ++|+|+     +|+++||++||++|++.
T Consensus        33 ~~~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~~g~~~~~g~~~-----~~~~~g~~~LA~~i~~~  107 (276)
T cd07949          33 FFDGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSYRNADEGWGIPA-----LAPFKGDPELSWHLIES  107 (276)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccccCcccccCCCC-----CCCCCCCHHHHHHHHHH
Confidence            369999999999999999999999 69    5565677888765554444  357775     57889999999999999


Q ss_pred             HHhCCCCcccccCCCCCcceeEeeccccccCC--CCCeeeeeCCCCC----ChHHHHHHHHHhccc-----ccCCeEEEE
Q 042295           94 LRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA--NIPVCQLSLQPEK----DGTYHYNVGKALAPL-----KDEGVLIIG  162 (264)
Q Consensus        94 l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~--diPVV~is~~~~~----~~~~~~~lG~aL~~~-----~d~~v~iIa  162 (264)
                      +.++||| +..+.++++|||+||||++|+|+.  ++||||||+|+..    ++++||+||++|+++     +|+||+|||
T Consensus       108 ~~~~g~d-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iia  186 (276)
T cd07949         108 LVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLG  186 (276)
T ss_pred             HHHcCCC-eeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEE
Confidence            9999996 777889999999999999999986  4999999999775    889999999999998     568999999


Q ss_pred             ecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchH--HHHHHhcccCC
Q 042295          163 SGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFY--PLHVAMGAAGE  235 (264)
Q Consensus       163 SG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~--pl~~a~Ga~~~  235 (264)
                      ||+|||||....   .  ..|+++||+|++++++ +|.++|++++.+   ......++|++.  +|++++||.+.
T Consensus       187 SG~lSH~l~~~~---~--g~~~~~fD~~~~~~l~-~d~~~L~~~~~~---~~~~~AG~~g~e~~~wi~~~GAl~~  252 (276)
T cd07949         187 TGGLSHQLDGER---A--GFINKDFDRYCLDKMV-DNPEWLTKYSIE---ELVELAGTQGVEFLMWIAMRGALGD  252 (276)
T ss_pred             eCccccCCCCCC---c--ccchHHHHHHHHHHHh-cCHHHHHcCCHH---HHHHHcccccHHHHHHHHHHHhhcc
Confidence            999999996432   2  2478999999999999 699999999622   123445567766  89999999965

This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway

Probab=100.00  E-value=6.3e-43  Score=314.80  Aligned_cols=225  Identities=17%  Similarity=0.169  Sum_probs=177.4

Q ss_pred             EEEEcCCCCCCCC--CCC------hHHHHHHHHHHHHhhcCCCCEEEEEc-CCCCCC----CCeEEEecCCCccCCCCCC
Q 042295            3 TFFISHGSPTLPI--DES------LQVRHFLKAWKEQVFLQKPNSILVIS-AHWETD----VPTVNVVRQNDTIYDFYGF   69 (264)
Q Consensus         3 ~~fisHG~P~~~~--~~~------~~~~~~l~~l~~~l~~~~Pd~IVviS-~Hw~~~----~~~i~~~~~~~~~~D~~gf   69 (264)
                      ++++||  ||+++  ++.      ..+.++++++++++++.+||+||||| +||.++    .+.+.++... ...||..|
T Consensus         7 a~~~sH--~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~-~~g~~~~~   83 (277)
T cd07368           7 GFMMPH--DPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGD-VDGPYDPL   83 (277)
T ss_pred             EeecCC--CccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEeccc-ccCCcccc
Confidence            578999  88775  331      37789999999999999999999997 688764    3445555443 35555545


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCC-----CCCeeeeeCCC----CCCh
Q 042295           70 PEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA-----NIPVCQLSLQP----EKDG  140 (264)
Q Consensus        70 P~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~-----diPVV~is~~~----~~~~  140 (264)
                      |...   +...+|+++||++|++.+.++||| +..+.++++|||+|+||++|+|+.     ++|+|||++|+    ..++
T Consensus        84 ~~~~---~~~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~p~~~~  159 (277)
T cd07368          84 PGLP---RAVIENNEPLAHHIMQHGLEYGID-WAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVDPFITS  159 (277)
T ss_pred             CCCC---cccCcCCHHHHHHHHHHHHHcCCC-EeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccCCCCCH
Confidence            4421   245799999999999999999995 777789999999999999999854     77777777654    4678


Q ss_pred             HHHHHHHHHhcc-----cccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchh
Q 042295          141 TYHYNVGKALAP-----LKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM  215 (264)
Q Consensus       141 ~~~~~lG~aL~~-----~~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~  215 (264)
                      ++||+||++|++     ++|+||+|||||+|||||+...+     .+|+++||+|+++++++||.++|++++.+  ... 
T Consensus       160 ~~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~~-----~~~~~~fD~~~~~~l~~gd~~~L~~~~~~--~~~-  231 (277)
T cd07368         160 WRAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAEM-----GAVNEGFDREIMKLVAQGDLAALIALSDE--EIL-  231 (277)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCccc-----cccCHHHHHHHHHHHHcCCHHHHHhCCHH--HHH-
Confidence            999999999999     56899999999999999966532     37889999999999999999999999532  122 


Q ss_pred             cCCCCcc--hHHHHHHhcccCCCCceeEec
Q 042295          216 AHPSPEH--FYPLHVAMGAAGEDAKAEQIH  243 (264)
Q Consensus       216 ahp~~~h--~~pl~~a~Ga~~~~~~~~~~~  243 (264)
                      ...++|+  +++|++++||.++. +.+++.
T Consensus       232 ~~aG~gg~e~~~~~~~~Gal~~~-~~~vl~  260 (277)
T cd07368         232 EDGGNGGMEIRNWACAMGALPAA-RGEVIA  260 (277)
T ss_pred             HHcccccHHHHHHHHHHHhcCCC-CccEEE
Confidence            2233554  99999999999754 556543

This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=7.8e-43  Score=314.18  Aligned_cols=237  Identities=20%  Similarity=0.283  Sum_probs=186.8

Q ss_pred             EEEEcCCCCCCCCCC-C---------hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCCC----CCeEEEecCCCccCCCC
Q 042295            3 TFFISHGSPTLPIDE-S---------LQVRHFLKAWKEQVFLQKPNSILVI-SAHWETD----VPTVNVVRQNDTIYDFY   67 (264)
Q Consensus         3 ~~fisHG~P~~~~~~-~---------~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~~----~~~i~~~~~~~~~~D~~   67 (264)
                      ++..||  ||++..+ +         .++.++++++++++++.+||+|||| |+|+..+    .+.++++.......++.
T Consensus         7 a~~~sH--~P~i~~~~~~g~~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~   84 (284)
T PRK13366          7 SVYTSH--VPAIGAAIDLGKTGEPYWQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADE   84 (284)
T ss_pred             EeecCC--CCccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCccc
Confidence            578899  8877653 1         3778999999999999999999999 9997653    34666665554444444


Q ss_pred             CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCCC----Ch
Q 042295           68 GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPEK----DG  140 (264)
Q Consensus        68 gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~~----~~  140 (264)
                      +|-.  .++. +++||++||++|++.+.++||| +....++++|||+|+||++|+|+.+   +||||||+|+..    ++
T Consensus        85 ~~g~--~~v~-~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~  160 (284)
T PRK13366         85 GWGP--RPVP-KVIGHPDLAAHIAQSVIQDDFD-LTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSG  160 (284)
T ss_pred             ccCC--CCCC-CCCCCHHHHHHHHHHHHHCCCC-EeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCH
Confidence            3321  2345 6899999999999999999996 7777789999999999999999765   999999999887    89


Q ss_pred             HHHHHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchh
Q 042295          141 TYHYNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM  215 (264)
Q Consensus       141 ~~~~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~  215 (264)
                      ++||+||++|+++     +|+||+|||||+|||||..++.   ++  .+++||+++++.+++ |.++|.+++.+ .  ..
T Consensus       161 ~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~---g~--~~~~fD~~~l~~l~~-d~~~l~~l~~~-~--~~  231 (284)
T PRK13366        161 RRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRA---GL--INREWDNAFLDRLIA-DPDGLSKMPHI-D--YV  231 (284)
T ss_pred             HHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCC---CC--CcHHHHHHHHHHHhc-CHHHHHcCCHH-H--HH
Confidence            9999999999999     4789999999999999985432   22  269999999999976 99999999641 1  22


Q ss_pred             cCCCCc--chHHHHHHhcccCC---CCceeEeccceeccceeeeE
Q 042295          216 AHPSPE--HFYPLHVAMGAAGE---DAKAEQIHQSWQLCSLSCSS  255 (264)
Q Consensus       216 ahp~~~--h~~pl~~a~Ga~~~---~~~~~~~~~~~~~~~~s~~~  255 (264)
                      ...++|  +.+.|++|+||.++   +.+.+.+|+.|.. -+|++.
T Consensus       232 ~~AG~~G~e~~~Wi~~~gAl~~~~~~~~~~~~~~~~~~-~~~~~~  275 (284)
T PRK13366        232 REAGSEGIELVMWLIARGAMSDVAGGPKPKVAHRFYHV-PASNTA  275 (284)
T ss_pred             HHcccchHHHHHHHHHHHhhhcccccCCceEeeeceec-ccccch
Confidence            334455  56777999999865   4578889988742 356663

>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain

Probab=100.00  E-value=1.5e-42  Score=308.92  Aligned_cols=233  Identities=20%  Similarity=0.248  Sum_probs=198.1

Q ss_pred             EEcCCCCCCCCCCC--------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccc
Q 042295            5 FISHGSPTLPIDES--------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKL   76 (264)
Q Consensus         5 fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~   76 (264)
                      |.||  ||+++++.        .+++++++++++++.+.+||+||||||||.+....|+++..+...+||+||+  .|++
T Consensus         1 ~~ph--~p~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~--~~~~   76 (256)
T cd07951           1 LVPH--PPLLVPEVGGGEEAEIAATRAACEAAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFG--APEV   76 (256)
T ss_pred             CCCC--CCcccccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcC--CCcc
Confidence            5689  77776432        3678999999999988899999999999999888899998889999999997  4889


Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCcccccCC--CCCcceeEeeccccccC-CCCCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295           77 KYPAPGAPDLAKRVKELLRTSGFNHVKEDTK--RGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPL  153 (264)
Q Consensus        77 ~y~~~g~~elA~~i~~~l~~~gid~~~~~~~--~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~  153 (264)
                      +|++++|++||++|.+.+.+.|++ +.....  +++|||+||||.+|+|. .++|||||+++ ..++++|++||++|+++
T Consensus        77 ~~~~~~d~~la~~l~~~l~~~g~~-~~~~~~~~~~~DHg~~vpl~~l~~~~~~~pvVpi~~~-~~~~~~~~~lG~aL~~~  154 (256)
T cd07951          77 SFGVDLDLELVEEIAGEADKEGLP-VGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLS-GLSPEELYAFGRALAAA  154 (256)
T ss_pred             eEeeeCCHHHHHHHHHHhhhcCCC-cccccCCCCCCCchhhhhHHhhcccCCcCCeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            999999999999999999999995 655433  69999999999999998 79999999997 67999999999999998


Q ss_pred             ---ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHh
Q 042295          154 ---KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAM  230 (264)
Q Consensus       154 ---~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~  230 (264)
                         ++++|+|||||++|||+....  +.+..+++++||++++++|+++|.++|+++...    .....+.|++.||.+++
T Consensus       155 ~~~~~~~vlii~SgdlsH~l~~~~--p~~~~~~a~~~D~~~~~~l~~~D~~~L~~~~~~----~~~~~~~~G~~~~~~l~  228 (256)
T cd07951         155 AEELGRRVALIASGDLSHRLTEDA--PGGYDPRGPEFDAAIAEALAKGDVDALLALDPE----LAEEAGECGRRSWQVLA  228 (256)
T ss_pred             HHhcCCcEEEEEecccccccCCCC--CCCCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHHHHhcChHHHHHHH
Confidence               478999999999999997542  445567899999999999999999999998432    11223579999999999


Q ss_pred             cccCCC-CceeEeccceecc
Q 042295          231 GAAGED-AKAEQIHQSWQLC  249 (264)
Q Consensus       231 Ga~~~~-~~~~~~~~~~~~~  249 (264)
                      |++... .++++++....+|
T Consensus       229 ~~~~~~~~~~~~l~y~~~~g  248 (256)
T cd07951         229 GALDGASVKGEVLSYEGPFG  248 (256)
T ss_pred             HhccCCCccceeeeccCCcc
Confidence            998643 3677777766655

This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.

>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=4.2e-41  Score=302.30  Aligned_cols=201  Identities=22%  Similarity=0.318  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEc-CCCCC----CCCeEEEecCCCccCCCCCC--ccccccccCCCCCCHHHHHHHHH
Q 042295           20 QVRHFLKAWKEQVFLQKPNSILVIS-AHWET----DVPTVNVVRQNDTIYDFYGF--PEQLYKLKYPAPGAPDLAKRVKE   92 (264)
Q Consensus        20 ~~~~~l~~l~~~l~~~~Pd~IVviS-~Hw~~----~~~~i~~~~~~~~~~D~~gf--P~~~y~~~y~~~g~~elA~~i~~   92 (264)
                      +..++++++++++++.+||+||||| ||...    ..+.|.++.......|+.+|  |+    . .+++||++||++|.+
T Consensus        32 ~v~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~----~-~~~~~~~~lA~~i~~  106 (278)
T PRK13364         32 PFFDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEYSNADEGWGIPT----L-APFKGDTELSWHIIE  106 (278)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCceecCChhhcCCCC----C-CCCCCCHHHHHHHHH
Confidence            3489999999999999999999998 89654    34678887777777776544  43    2 568999999999999


Q ss_pred             HHHhCCCCcccccCCCCCcceeEeeccccccCCC--CCeeeeeCCCCC----ChHHHHHHHHHhccc-----ccCCeEEE
Q 042295           93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN--IPVCQLSLQPEK----DGTYHYNVGKALAPL-----KDEGVLII  161 (264)
Q Consensus        93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d--iPVV~is~~~~~----~~~~~~~lG~aL~~~-----~d~~v~iI  161 (264)
                      .+.++||| ++...++++|||+|+||++|+|+.+  +||||||+|+..    ++++||+||++|+++     +|+||+||
T Consensus       107 ~l~~~gid-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iI  185 (278)
T PRK13364        107 SLVEEEFD-ITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVVVI  185 (278)
T ss_pred             HHHHcCCC-eecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            99999996 8778889999999999999999976  889999998765    799999999999998     57899999


Q ss_pred             EecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcch--HHHHHHhcccCC
Q 042295          162 GSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHF--YPLHVAMGAAGE  235 (264)
Q Consensus       162 aSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~--~pl~~a~Ga~~~  235 (264)
                      |||+|||||...   +.++.  +++||+++++++++ |.++|++++.+   ......++|++  ++|++++||.+.
T Consensus       186 aSG~LSH~l~~~---p~G~~--~~~fD~~~l~~l~~-d~~~l~~~~~~---e~~~~AG~~g~Eir~wi~~~gAl~~  252 (278)
T PRK13364        186 GTGGLSHQLDGE---RAGFI--NKDFDLQCMDSLVS-DPEWLTQYSNH---ELVELAGTQGVELLNWLAMRGALGG  252 (278)
T ss_pred             EeCccccCCCCC---CcccC--CHHHHHHHHHHHHh-CHHHHHcCCHH---HHHHHcccccHHHHHHHHHHHhhcC
Confidence            999999999743   44554  49999999999999 99999999622   13455667877  999999999965

>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=7.3e-41  Score=300.41  Aligned_cols=222  Identities=21%  Similarity=0.299  Sum_probs=179.4

Q ss_pred             EEEEcCCCCCCCC-CC---ChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-------CCeEEEecCCCccCCCCCCcc
Q 042295            3 TFFISHGSPTLPI-DE---SLQVRHFLKAWKEQVFLQKPNSILVISAHWETD-------VPTVNVVRQNDTIYDFYGFPE   71 (264)
Q Consensus         3 ~~fisHG~P~~~~-~~---~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-------~~~i~~~~~~~~~~D~~gfP~   71 (264)
                      ++++||  +.+.- ++   ..++.++|+++++++.+.+||+||||||||.+.       ..+|+.+.....++|| |||+
T Consensus         7 ~~~~pH--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd~-g~~~   83 (269)
T PRK13358          7 AFATSH--VLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGDM-DIPR   83 (269)
T ss_pred             ehcccc--cccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCcccc-CCCc
Confidence            468899  42211 11   148889999999999888999999999998743       2356666666678887 9998


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCC----hHHHHHHH
Q 042295           72 QLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKD----GTYHYNVG  147 (264)
Q Consensus        72 ~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~----~~~~~~lG  147 (264)
                      ++      ++||++||++|.+.+.+.|+| ++.+.++++|||+|+||++|+|+.++||||||+++..+    +++|++||
T Consensus        84 ~~------~~g~~~LA~~l~~~~~~~~~~-~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~~~~~lG  156 (269)
T PRK13358         84 EL------VPGHRAFAQAIALHRAADGFD-LAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAKRCAALG  156 (269)
T ss_pred             cc------CCCCHHHHHHHHHHHHHcCCC-eeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHH
Confidence            64      589999999999999999995 77777899999999999999999999999999997555    49999999


Q ss_pred             HHhcccc------cCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCc
Q 042295          148 KALAPLK------DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPE  221 (264)
Q Consensus       148 ~aL~~~~------d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~  221 (264)
                      ++|++++      ++||+|||||++||++...+     +.+++++||+|++++++++|.++|.++.++  +. ....++|
T Consensus       157 ~al~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~-----~~~~~~~fD~~~~~~i~~~D~~~l~~~~~~--~~-~~~~G~g  228 (269)
T PRK13358        157 EVIRQAVEKDRPADERVAVIGTGGLSHWLGVPE-----HGEVNEDFDRMVMDALVSGDLEALVALGNE--EI-LEQGGNG  228 (269)
T ss_pred             HHHHHHHHhhCCCCCcEEEEecCCccCCCCCcc-----ccccHHHHHHHHHHHHHcCCHHHHHhcCHH--HH-HHhcCcc
Confidence            9999973      57999999999999997432     247899999999999999999999988432  11 1234456


Q ss_pred             ch--HHHHHHhcccCCCCceeEec
Q 042295          222 HF--YPLHVAMGAAGEDAKAEQIH  243 (264)
Q Consensus       222 h~--~pl~~a~Ga~~~~~~~~~~~  243 (264)
                      .+  ++|++++|+.++ .+.+++.
T Consensus       229 ~~~~~~~~~~~ga~~g-~~~~~l~  251 (269)
T PRK13358        229 GLEIRNWIMAAAAVPG-RRGEKIY  251 (269)
T ss_pred             cHHHHHHHHHHhhcCC-CccceEE
Confidence            66  899999999875 4666654

>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate

Probab=100.00  E-value=9.4e-41  Score=300.41  Aligned_cols=218  Identities=20%  Similarity=0.267  Sum_probs=175.4

Q ss_pred             EEEcCCCCCCCCCCC----------hHHHHHHHHHHHHhhcCCCCEEEEEc-CCCCCC----CCeEEEecCCCc-cCCCC
Q 042295            4 FFISHGSPTLPIDES----------LQVRHFLKAWKEQVFLQKPNSILVIS-AHWETD----VPTVNVVRQNDT-IYDFY   67 (264)
Q Consensus         4 ~fisHG~P~~~~~~~----------~~~~~~l~~l~~~l~~~~Pd~IVviS-~Hw~~~----~~~i~~~~~~~~-~~D~~   67 (264)
                      +..||  ||++....          +.+.++++++++++++.+||+||||| +|..++    .+.++++..... .+|+.
T Consensus         8 ~~~sH--~P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~~~~d~~   85 (277)
T cd07950           8 IGSSH--TPTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSYEVADEG   85 (277)
T ss_pred             hhcCC--CCccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccccccccc
Confidence            45799  87663221          37889999999999999999999998 664433    345665544433 66777


Q ss_pred             CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCC---C-Ch
Q 042295           68 GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPE---K-DG  140 (264)
Q Consensus        68 gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~---~-~~  140 (264)
                      ++|+++    ++++||++||++|++.+.++||| +..+.++++|||+||||++|+|+.+   +|||+|++|..   + ++
T Consensus        86 ~~~~~~----~~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~~l~~~  160 (277)
T cd07950          86 GGPRDL----PPIRGHAALAQHIAESLVADEFD-LTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQFPLPTA  160 (277)
T ss_pred             cCCccC----CCCCCCHHHHHHHHHHHHhcCCC-eeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEecCCCCH
Confidence            788765    57899999999999999999996 7778899999999999999999876   88999998753   3 79


Q ss_pred             HHHHHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchh
Q 042295          141 TYHYNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM  215 (264)
Q Consensus       141 ~~~~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~  215 (264)
                      ++||+||++|+++     +|+||+|||||+|||||...   +.++.+  ++||+++++++++ |.++|++++.+ .....
T Consensus       161 ~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~~---~~g~~~--~~~D~~f~~~l~~-d~~~l~~~~~~-~~~~~  233 (277)
T cd07950         161 RRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVHGE---RAGFNN--TEWDMEFLDLIEN-DPESLAAMTHA-DYATL  233 (277)
T ss_pred             HHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCCCC---CCCCCC--HHHHHHHHHHHHh-CHHHHHcCCHH-HHHHH
Confidence            9999999999999     67899999999999999743   233333  8899999999996 99999999643 11245


Q ss_pred             cCCCCcchHHHHHHhcccCC
Q 042295          216 AHPSPEHFYPLHVAMGAAGE  235 (264)
Q Consensus       216 ahp~~~h~~pl~~a~Ga~~~  235 (264)
                      ++.+.-+.+.|+.++||+++
T Consensus       234 aG~~~~E~~~wi~~~gal~~  253 (277)
T cd07950         234 GGAEGAEVIMWLIMRGALSD  253 (277)
T ss_pred             cCcchHHHHHHHHHHHhhcC
Confidence            55555578999999999865

Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en

>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP)

Probab=100.00  E-value=7.4e-40  Score=299.72  Aligned_cols=227  Identities=17%  Similarity=0.195  Sum_probs=180.1

Q ss_pred             EEEcCCCCCCCC--CCC------hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCeEEEecCCCccCCCC---
Q 042295            4 FFISHGSPTLPI--DES------LQVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPTVNVVRQNDTIYDFY---   67 (264)
Q Consensus         4 ~fisHG~P~~~~--~~~------~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~i~~~~~~~~~~D~~---   67 (264)
                      +.+||  ||+++  ++.      ..+.++++++++++++.+||+|||| |+||..    ..+.|+++..+...+||.   
T Consensus         8 ~~~sH--~P~i~~~p~~~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~   85 (329)
T cd07369           8 IGMSH--APGALGWPDAPSPDVRARTEEATLKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLM   85 (329)
T ss_pred             eecCC--CccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhcc
Confidence            56899  88775  441      4788999999999999999999997 999873    345677766555555643   


Q ss_pred             -CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC----CChHH
Q 042295           68 -GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE----KDGTY  142 (264)
Q Consensus        68 -gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~----~~~~~  142 (264)
                       +|.-   ..+++++||++||++|++.+.+.||| +..+.++++|||+|+||++|+|+.++||||||+|+.    +++++
T Consensus        86 ~~~~~---~~~~~~~gd~eLA~~I~~~l~~~G~d-va~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~p~~~~~r  161 (329)
T cd07369          86 EALRV---PKKHYFPGNPEVAEQLLRALVHDSFD-CARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSPPLMKYSR  161 (329)
T ss_pred             ccCCC---CcccCCCCCHHHHHHHHHHHHHCCCC-eeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCCCCCCHHH
Confidence             3321   13578899999999999999999996 777778999999999999999999999999999887    78999


Q ss_pred             HHHHHHHhcccc-----cCCeEEEEecCCcccc-----------------cccccCCCCC--------------------
Q 042295          143 HYNVGKALAPLK-----DEGVLIIGSGSATHNL-----------------KALQFDGDSV--------------------  180 (264)
Q Consensus       143 ~~~lG~aL~~~~-----d~~v~iIaSG~lsH~l-----------------~~~~~~~~~~--------------------  180 (264)
                      ||+||++|++++     |+||+|||||+|||++                 ...+  ++++                    
T Consensus       162 ~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~  239 (329)
T cd07369         162 AYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRMKEYQ--TYGKPVLEKDPNLFVDLAAYEIEM  239 (329)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCccccccchhhhhhhhhccccC--cCCcCcchhhhhhhhhhhhhhhhh
Confidence            999999999985     4899999999999943                 3222  4444                    


Q ss_pred             -----------cc-hHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc--hHHHHHHhcccCCCCceeEe
Q 042295          181 -----------VS-WASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH--FYPLHVAMGAAGEDAKAEQI  242 (264)
Q Consensus       181 -----------~~-~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h--~~pl~~a~Ga~~~~~~~~~~  242 (264)
                                 .| .+++||+++++++++||.++|.+++.+   ...+..+.|.  .+.|++++||.++. +.+++
T Consensus       240 ~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~e~~~wi~~~gAl~~~-~~~~~  311 (329)
T cd07369         240 AKKNQWPLNSKHPLVNAAWDRKFLKAYCRGDSEWLKNLTYE---EVEEEGGHGGHEILNWVAVMGAMDGK-KAKLL  311 (329)
T ss_pred             hhhhcccccccCCccCHHHHHHHHHHHHcCCHHHHHcCCHH---HHHHHcccchHHHHHHHHHHHhcCCC-CcceE
Confidence                       55 599999999999999999999999632   1233344554  45599999999654 44544

This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate

Probab=100.00  E-value=6.2e-39  Score=293.74  Aligned_cols=207  Identities=18%  Similarity=0.195  Sum_probs=168.5

Q ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEEcC-CCCC----CCCeEEEecCCCccCCCCCC------cc------ccccccCCCC
Q 042295           19 LQVRHFLKAWKEQVFLQKPNSILVISA-HWET----DVPTVNVVRQNDTIYDFYGF------PE------QLYKLKYPAP   81 (264)
Q Consensus        19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~-Hw~~----~~~~i~~~~~~~~~~D~~gf------P~------~~y~~~y~~~   81 (264)
                      ....++++++++++++.+||+|||||| |.+.    ..+.|+++.......|+...      |.      ..-+++++++
T Consensus        69 ~~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (328)
T cd07366          69 ARCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPDEARTYP  148 (328)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCCCCcCCC
Confidence            366799999999999999999999999 6543    34577777666666664320      00      1123667889


Q ss_pred             CCHHHHHHHHHHHHhCCCCcccc----cCCCCCcceeEeeccccccCCCCCeeeeeCCCCC-----ChHHHHHHHHHhcc
Q 042295           82 GAPDLAKRVKELLRTSGFNHVKE----DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK-----DGTYHYNVGKALAP  152 (264)
Q Consensus        82 g~~elA~~i~~~l~~~gid~~~~----~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~-----~~~~~~~lG~aL~~  152 (264)
                      ||++||++|++.+.+.||| +..    +.++++|||+|+|+++++|+.++||||||+|...     ++++||+||++|++
T Consensus       149 gd~eLA~~I~~~l~~~G~d-v~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~aL~~  227 (328)
T cd07366         149 CHPELARHLIKHTVADGFD-VAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRAVAR  227 (328)
T ss_pred             CCHHHHHHHHHHHHHcCCC-eeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999996 665    3345889999999999999999999999999754     77999999999999


Q ss_pred             c-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHH
Q 042295          153 L-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLH  227 (264)
Q Consensus       153 ~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~  227 (264)
                      +     +|+||+|||||+|||||            ++++||+|+++++++||.++|++++.+.     ...++|++++|+
T Consensus       228 ai~~~~~d~rV~IIaSGgLSH~l------------~~~eFD~~~l~~l~~gD~~~L~~~~~~~-----~~aG~~elr~wi  290 (328)
T cd07366         228 AIRSWPGDARVGVIASGGLSHFV------------IDEEFDRRILDALRNRDAEFLSSLPEAH-----LQSGTSELKNWI  290 (328)
T ss_pred             HHHhcCCCCCEEEEEeCccccCC------------ChHHHHHHHHHHHHcCCHHHHHcCCHHH-----HhccchhHHHHH
Confidence            8     48999999999999998            3499999999999999999999996442     124579999999


Q ss_pred             HHhcccCCC-CceeEec
Q 042295          228 VAMGAAGED-AKAEQIH  243 (264)
Q Consensus       228 ~a~Ga~~~~-~~~~~~~  243 (264)
                      +++||.+.. .+.+++.
T Consensus       291 ~~~GAl~~~~~~~~vl~  307 (328)
T cd07366         291 AAAGALDDLGLKMTSVD  307 (328)
T ss_pred             HHHHhhcCCCcceeEEE
Confidence            999999653 3455543

3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=1.1e-38  Score=287.06  Aligned_cols=205  Identities=19%  Similarity=0.256  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCeEEEecCCCc-cCCCCCCccccccccCCCCCCHHHHHHHHH
Q 042295           19 LQVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPTVNVVRQNDT-IYDFYGFPEQLYKLKYPAPGAPDLAKRVKE   92 (264)
Q Consensus        19 ~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~i~~~~~~~~-~~D~~gfP~~~y~~~y~~~g~~elA~~i~~   92 (264)
                      .++.++++++++++++.+||+|||| |+|...    ..+.++++..... ..|| |.+..   -..+++||++||++|++
T Consensus        31 ~~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~-g~~~~---~~~~~~g~~eLA~~i~~  106 (279)
T PRK13365         31 KPLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADE-GAGLR---PLPPIRGDVQLQAHIAE  106 (279)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEeccccccccc-ccCCC---CCCCCCCCHHHHHHHHH
Confidence            4788999999999999999999999 778443    3345665543332 3332 12221   11367999999999999


Q ss_pred             HHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCCC----ChHHHHHHHHHhccc-----ccCCeEE
Q 042295           93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPEK----DGTYHYNVGKALAPL-----KDEGVLI  160 (264)
Q Consensus        93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~~----~~~~~~~lG~aL~~~-----~d~~v~i  160 (264)
                      .+.++||| +....++++|||+||||++|+|+.+   +|||||++|+..    ++++||+||++|+++     +|+||+|
T Consensus       107 ~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rV~i  185 (279)
T PRK13365        107 CLVNDEFD-LTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQYPLPTARRCYRLGQALRRAIESYPEDLRVVV  185 (279)
T ss_pred             HHHHcCCC-eeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEE
Confidence            99999996 7777789999999999999999876   999999998654    789999999999998     3789999


Q ss_pred             EEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC
Q 042295          161 IGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE  235 (264)
Q Consensus       161 IaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~  235 (264)
                      ||||+|||||....   .++.  .++||++++++++ +|.++|++++.+ .....+....-+.+.|++++||++.
T Consensus       186 IaSG~LSH~l~~~~---~g~~--~~~~D~~f~~~l~-~d~~~l~~~~~~-~~~~~aG~~g~ei~~wi~~~gal~~  253 (279)
T PRK13365        186 VGTGGLSHQIHGER---SGFN--NTEWDMEFLDRFQ-HAPETLTDLTHT-DYVRLGGAESVEQIMWLAMRGALGG  253 (279)
T ss_pred             EEeCccccCCCCCC---ccCC--CHHHHHHHHHHHh-hCHHHHHcCCHH-HHHHHcCcccHHHHHHHHHHHhhcC
Confidence            99999999998643   3333  3899999999997 699999999642 2234555555578999999999865

>PRK13367 protocatechuate 4,5-dioxygenase; Provisional

Probab=100.00  E-value=1.6e-38  Score=296.68  Aligned_cols=203  Identities=21%  Similarity=0.311  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCe--EEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHH
Q 042295           20 QVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPT--VNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKE   92 (264)
Q Consensus        20 ~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~--i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~   92 (264)
                      +..++++.+++++++.+||+|||| ++|...    ..++  |+++++.. .|||+|||+++    |+++|+++||++|++
T Consensus        32 ~v~~~~~~~r~~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~~-~~D~~g~P~~l----y~~~G~peLA~~I~~  106 (420)
T PRK13367         32 PIFESFAPLRRWLEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQYA-VADEGGGPRDL----PPVRGHAALSRHIGA  106 (420)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEeccccc-ccccCCCcccc----CCCCCCHHHHHHHHH
Confidence            667899999999999999999999 558553    3444  55555544 79999999987    589999999999999


Q ss_pred             HHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCC---C-ChHHHHHHHHHhcccc-----cCCeEE
Q 042295           93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPE---K-DGTYHYNVGKALAPLK-----DEGVLI  160 (264)
Q Consensus        93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~---~-~~~~~~~lG~aL~~~~-----d~~v~i  160 (264)
                      .|.++||| ++.+.++++|||+||||++|+|+.+   +|||||++|..   + |+++||+||++|++++     |+||+|
T Consensus       107 ~L~~~gfD-~a~~~~~~lDHG~~VPL~~l~p~ad~~P~~VVPi~invvq~Plps~~r~~~LG~AL~~aie~~~~d~rVlI  185 (420)
T PRK13367        107 SLMADEFD-MSFFQDKPLDHGLFSPLSALLPHDDGWPVQVVPLQVGVLQFPIPSARRCYKLGQALRRAIESYPEDLKVAI  185 (420)
T ss_pred             HHHhcCCC-eecccCCCCCcchhhhHHHhCCccccCCCceeeeeeceeecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEE
Confidence            99999997 8888999999999999999999875   77999988864   2 7999999999999995     689999


Q ss_pred             EEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC
Q 042295          161 IGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE  235 (264)
Q Consensus       161 IaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~  235 (264)
                      ||||+|||||.....   ++.  +++||+++++++++ |.++|.+++. ....+.+..+.-+++.|++++||.+.
T Consensus       186 IgSGgLSH~L~~~~~---g~~--n~~wD~~Fld~L~~-d~e~L~~~~~-~e~~~~aG~~g~Ei~~Wl~a~GAL~~  253 (420)
T PRK13367        186 VATGGLSHQVHGERC---GFN--NPEWDAQFLDLLVN-DPERLTEMTL-AEYATLGGMEGAEVIMWLIMRGALSA  253 (420)
T ss_pred             EEeCccccCCCCCCC---CCC--CHHHHHHHHHHHHh-CHHHHHcCCH-HHHHHHcCCchHHHHHHHHHHhhhcc
Confidence            999999999975432   222  38899999999986 9999999953 23445555555579999999999865

>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=2.6e-38  Score=290.21  Aligned_cols=207  Identities=14%  Similarity=0.198  Sum_probs=170.8

Q ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEEcCCC-CC----CCCeEEEecCCCccCCCCCC--------------ccccccccCC
Q 042295           19 LQVRHFLKAWKEQVFLQKPNSILVISAHW-ET----DVPTVNVVRQNDTIYDFYGF--------------PEQLYKLKYP   79 (264)
Q Consensus        19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw-~~----~~~~i~~~~~~~~~~D~~gf--------------P~~~y~~~y~   79 (264)
                      ....++++++++++++.+||+|||||||. ..    ..+.|+++.......|+..|              |...-+++++
T Consensus        71 ~~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  150 (335)
T PRK13363         71 AACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETT  150 (335)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcC
Confidence            36679999999999999999999999975 33    24777777766667665443              2233346788


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCcccc----cCCCCCcceeEeeccccccCCCCCeeeeeCCCCCC-----hHHHHHHHHHh
Q 042295           80 APGAPDLAKRVKELLRTSGFNHVKE----DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKD-----GTYHYNVGKAL  150 (264)
Q Consensus        80 ~~g~~elA~~i~~~l~~~gid~~~~----~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~-----~~~~~~lG~aL  150 (264)
                      ++||++||++|++.+.++||| +..    +.++++|||+|+||++++|+.++|||||++|...+     +++||+||++|
T Consensus       151 ~~gd~eLA~~I~~~l~~~G~d-~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL  229 (335)
T PRK13363        151 YPVVPELARHMIRRLVDDGFD-ITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSL  229 (335)
T ss_pred             CCCCHHHHHHHHHHHHHcCCC-eeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHH
Confidence            999999999999999999996 663    34567999999999999999999999999997544     59999999999


Q ss_pred             ccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHH
Q 042295          151 APL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYP  225 (264)
Q Consensus       151 ~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~p  225 (264)
                      +++     +|+||+|||||+||||+.            +++||+|++++|+++|.+.|++++.+    .. ..++|++++
T Consensus       230 ~~~i~~~~~d~rVlIIaSGdLSH~l~------------~~efD~~~l~~l~~~D~~~L~~~~~~----~~-~aG~~eir~  292 (335)
T PRK13363        230 RRAIRSWPEDARVAVIASGGLSHFVI------------DEELDRLIIDAIRAKDFAALASLDEA----IL-QSGTSEIKN  292 (335)
T ss_pred             HHHHHhcCcCCCEEEEEeCccccCCc------------HHHHHHHHHHHHHcCCHHHHHccCHH----HH-HhCchhHHH
Confidence            998     468999999999999984            38999999999999999999999643    11 346799999


Q ss_pred             HHHHhcccCC-CCceeEec
Q 042295          226 LHVAMGAAGE-DAKAEQIH  243 (264)
Q Consensus       226 l~~a~Ga~~~-~~~~~~~~  243 (264)
                      |++++||.++ +.+.+++.
T Consensus       293 wi~~~GAl~~~~~~~evls  311 (335)
T PRK13363        293 WIAVAGALDDAGLDMTWVD  311 (335)
T ss_pred             HHHHHHhhccCCCCceEEE
Confidence            9999999975 34556654

>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate

Probab=100.00  E-value=5.6e-38  Score=286.00  Aligned_cols=221  Identities=19%  Similarity=0.262  Sum_probs=180.2

Q ss_pred             EEEEcCCCCCCCCCCC-----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-----CCeEEEecCCCccCCCCCCccc
Q 042295            3 TFFISHGSPTLPIDES-----LQVRHFLKAWKEQVFLQKPNSILVISAHWETD-----VPTVNVVRQNDTIYDFYGFPEQ   72 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-----~~~i~~~~~~~~~~D~~gfP~~   72 (264)
                      ++..|| +|.+.....     .+..++++++++++++.+||+||||||||...     .++|+++......+||.+|+..
T Consensus         5 ~~~~sH-~p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g~   83 (310)
T cd07365           5 LICMSH-SPLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAGP   83 (310)
T ss_pred             eeeeCC-CcccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCCC
Confidence            356678 443322111     36679999999999999999999999997663     3578888878889999998763


Q ss_pred             cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCC-CCCeeeeeCCCC----CChHHHHHHH
Q 042295           73 LYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA-NIPVCQLSLQPE----KDGTYHYNVG  147 (264)
Q Consensus        73 ~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~-diPVV~is~~~~----~~~~~~~~lG  147 (264)
                             .++|++||++|.+.+.+.||| ++...++++|||+||||+||++.. ++|||||++|..    .++++|++||
T Consensus        84 -------~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~r~~~lG  155 (310)
T cd07365          84 -------LNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMRRARALG  155 (310)
T ss_pred             -------CCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHHHHHHHH
Confidence                   467999999999999999995 777788999999999999999874 699999999954    5789999999


Q ss_pred             HHhcccc---cCCeEEEEecCCcccccccc--------------------------------------cCCCCCcchHHH
Q 042295          148 KALAPLK---DEGVLIIGSGSATHNLKALQ--------------------------------------FDGDSVVSWASE  186 (264)
Q Consensus       148 ~aL~~~~---d~~v~iIaSG~lsH~l~~~~--------------------------------------~~~~~~~~~~~~  186 (264)
                      ++|+++.   ++||+|||||+|||++....                                      .+++++.|.+++
T Consensus       156 ~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p~~~~  235 (310)
T cd07365         156 EAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMPLNPE  235 (310)
T ss_pred             HHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHHHHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCCCCHH
Confidence            9999973   67999999999999942111                                      246677889999


Q ss_pred             HHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcch--HHHHHHhcccCC
Q 042295          187 FDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHF--YPLHVAMGAAGE  235 (264)
Q Consensus       187 FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~--~pl~~a~Ga~~~  235 (264)
                      ||+++++++++||.++|++++.+   ......+.|++  ++|++++||...
T Consensus       236 fD~~~l~~~~~gd~~~l~~~~~~---~~~~~aG~~g~Ei~~w~~~~gal~~  283 (310)
T cd07365         236 WDRAFLDLLASGDLAALDAMTND---EIAAQAGNSAHEVRTWVAAFAALAA  283 (310)
T ss_pred             HHHHHHHHHHcCCHHHHHcCCHH---HHHHHhccccHHHHHHHHHHHHhhh
Confidence            99999999999999999999643   12344556777  999999999863

2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca

>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional

Probab=100.00  E-value=6.7e-38  Score=285.81  Aligned_cols=218  Identities=19%  Similarity=0.254  Sum_probs=179.0

Q ss_pred             EEEcCCCCCCCCCCC-----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-----CCeEEEecCCCccCCCCCCcccc
Q 042295            4 FFISHGSPTLPIDES-----LQVRHFLKAWKEQVFLQKPNSILVISAHWETD-----VPTVNVVRQNDTIYDFYGFPEQL   73 (264)
Q Consensus         4 ~fisHG~P~~~~~~~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-----~~~i~~~~~~~~~~D~~gfP~~~   73 (264)
                      +..|| +|.+-..+.     ....++|+++++++++.+||+||||||||.+.     .+.|+++......+||.+|+.. 
T Consensus         6 ~~~sH-~P~~~~~~~~~~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g~-   83 (313)
T PRK13370          6 VCLSH-SPLVGYVDPAQEVLAEVNAVIAAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAGP-   83 (313)
T ss_pred             eecCC-CCccCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCCC-
Confidence            34577 554433221     36679999999999999999999999976554     5688888888889999998753 


Q ss_pred             ccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCC-CCCeeeeeCCC----CCChHHHHHHHH
Q 042295           74 YKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA-NIPVCQLSLQP----EKDGTYHYNVGK  148 (264)
Q Consensus        74 y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~-diPVV~is~~~----~~~~~~~~~lG~  148 (264)
                            .++|++||++|.+.+.+.||| ++.+.++++|||+|+||++|+|+. ++|||||++|+    ..++++|++||+
T Consensus        84 ------~~~d~eLA~~i~~~~~~~g~d-~a~~~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG~  156 (313)
T PRK13370         84 ------LPVPSDLAEALAEAVLDSGID-VAVSYRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLGE  156 (313)
T ss_pred             ------CCCCHHHHHHHHHHhHhcCCC-hhhcCCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHHH
Confidence                  588999999999999999997 777788999999999999999874 59999999996    357899999999


Q ss_pred             Hhcccc---cCCeEEEEecCCcccccccc--------------------------------------cCCCCCcchHHHH
Q 042295          149 ALAPLK---DEGVLIIGSGSATHNLKALQ--------------------------------------FDGDSVVSWASEF  187 (264)
Q Consensus       149 aL~~~~---d~~v~iIaSG~lsH~l~~~~--------------------------------------~~~~~~~~~~~~F  187 (264)
                      +|+++.   ++||+|||||+|||++....                                      .+++++.|.+++|
T Consensus       157 aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~erl~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~p~~~~~  236 (313)
T PRK13370        157 AVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRERLIAGRNPTPEERAARQQRVIAAARIFAAGQSALHPLNPEW  236 (313)
T ss_pred             HHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHHHHccCCccHHHHHHHHhhHHhhhhhcccCcccCCCCCHHH
Confidence            999962   78999999999999842111                                      2467778999999


Q ss_pred             HHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc--hHHHHHHhccc
Q 042295          188 DCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH--FYPLHVAMGAA  233 (264)
Q Consensus       188 D~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h--~~pl~~a~Ga~  233 (264)
                      |+++++.+++||.++|.+++.+   ......+.|+  +++|++|+||.
T Consensus       237 D~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~E~r~w~~~~gal  281 (313)
T PRK13370        237 DRAFLDLLESGDLAALDAWTNE---EITREAGKSAHEIRTWVAAFAAL  281 (313)
T ss_pred             HHHHHHHHHcCCHHHHhcCCHH---HHHHHhccchHHHHHHHHHHHHH
Confidence            9999999999999999999643   1223355666  99999999998

>PRK13373 putative dioxygenase; Provisional

Probab=100.00  E-value=2e-34  Score=261.18  Aligned_cols=213  Identities=17%  Similarity=0.182  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCEEEEE-cCCCCCC----CCeEEEecCCCccCCCCCC---ccccccccCCCCCCHHHHHHHH
Q 042295           20 QVRHFLKAWKEQVFLQKPNSILVI-SAHWETD----VPTVNVVRQNDTIYDFYGF---PEQLYKLKYPAPGAPDLAKRVK   91 (264)
Q Consensus        20 ~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~~----~~~i~~~~~~~~~~D~~gf---P~~~y~~~y~~~g~~elA~~i~   91 (264)
                      +..++++++++++++.+||+|||| ++||..+    .++|+++......+|+.|.   |+-  ...-+.+|+++||++|+
T Consensus        30 ~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g~~~~~g~~~~~--~~~~~~~g~~elA~~l~  107 (344)
T PRK13373         30 RLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGPATQWLEALRL--TRQERFGGAPEIAERLL  107 (344)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccCCccccccccCC--CCCCCCCCCHHHHHHHH
Confidence            667999999999999999999999 7798753    4556665544444555531   110  11236799999999999


Q ss_pred             HHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC----ChHHHHHHHHHhcccc-----cCCeEEEE
Q 042295           92 ELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK----DGTYHYNVGKALAPLK-----DEGVLIIG  162 (264)
Q Consensus        92 ~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~----~~~~~~~lG~aL~~~~-----d~~v~iIa  162 (264)
                      +.+.++||| ++.+.++.+|||+++||++|+|+..+|||||.+|+..    +++||++||++|+++.     |+||+|||
T Consensus       108 ~~l~~~gfD-va~s~~m~vDHg~~vPl~~l~~~~~~pvVPV~vN~~~~P~p~~~R~~~lG~ai~~ai~~~~~d~rV~~~~  186 (344)
T PRK13373        108 RSLVADGYD-VARMGEIEYGNNLMVPWKLMAPRSAPAIIPVFTNVFSPPVMPYRRAYAFGAALRNAAEALDADLRVAFMA  186 (344)
T ss_pred             HHHHHcCCC-eeeeeceeCCcceeeeHHHhCCCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            999999998 8888999999999999999999988899999999853    6799999999999972     58999999


Q ss_pred             ecCCcccccccc----------------------------------------------cCCCCCcc-hHHHHHHHHHHHH
Q 042295          163 SGSATHNLKALQ----------------------------------------------FDGDSVVS-WASEFDCWLKDAL  195 (264)
Q Consensus       163 SG~lsH~l~~~~----------------------------------------------~~~~~~~~-~~~~FD~~~~~~l  195 (264)
                      ||+|||++.-..                                              ++.....+ .+++||+++++.+
T Consensus       187 sGgLSH~p~~~~~~~p~~~~~l~~~~~~q~~G~~~~~r~~~~~r~~~~~~i~~~~r~~~~~~~~~~~iN~ewD~~fLd~l  266 (344)
T PRK13373        187 TGGMSHWPPFWNDSSPEADAFLARMKAFQTHGKSVLEKDPHLLRDLAAYEIEMAERNQWPLNSPHPLVNEAWDRQMLDAL  266 (344)
T ss_pred             cCcccCCCcccccCchhhhhhhhccccccccCCCchhhhhhhhhhhhhhhhhHHHHhhccccccccccCHHHHHHHHHHH
Confidence            999999753200                                              01111224 8899999999999


Q ss_pred             HcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC
Q 042295          196 LQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED  236 (264)
Q Consensus       196 ~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~  236 (264)
                      ++||.+.|.+++.+ ...+.+..+.-.++.|+.++||+++.
T Consensus       267 ~~gD~e~L~~~t~~-e~~~~~G~gg~Ei~~Wiaa~gAlg~~  306 (344)
T PRK13373        267 ARGDVEFLCGLQYE-DVKRDGGHGGQEIINWIELMGAMKGA  306 (344)
T ss_pred             HcCCHHHHHcCCHH-HHHHHcCcccHHHHHHHHHHHhccCC
Confidence            99999999999642 22344544455699999999999754

>COG3885 Uncharacterized conserved protein [Function unknown]

Probab=99.90  E-value=5.7e-23  Score=175.60  Aligned_cols=223  Identities=17%  Similarity=0.217  Sum_probs=171.2

Q ss_pred             EEEEcCCCCCCCCCCC---hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCC
Q 042295            3 TFFISHGSPTLPIDES---LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYP   79 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~---~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~   79 (264)
                      -|.++|| +-+.-+++   ..+.++++++++.+  ..++++||||||.......+++.-...+++-++.+-..-  ++..
T Consensus         5 iyv~PHg-dEii~~~~~e~~~l~kA~k~i~~~~--~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~~--i~~e   79 (261)
T COG3885           5 IYVIPHG-DEIIDPEDEESRKLNKAIKEIASDD--KGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHHP--IRKE   79 (261)
T ss_pred             EEeccCC-ccccCCchhHHHHHHHHHHHHHccc--CCCceEEEEcCCceeeechhhHHhHHhhcccccccccCc--chhh
Confidence            4789997 33433332   57889999998885  349999999999877666666554444444334332222  4444


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCccc---c------cCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHh
Q 042295           80 APGAPDLAKRVKELLRTSGFNHVK---E------DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKAL  150 (264)
Q Consensus        80 ~~g~~elA~~i~~~l~~~gid~~~---~------~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL  150 (264)
                      ...|.+||..|.+....+ | |+.   .      ..+..||||.++||+|+-   .-.||.+.-.. ++-++.++||..|
T Consensus        80 y~~dreLa~~I~~~a~g~-~-p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk---~rrIV~lt~ar-l~~~~l~~Fg~~l  153 (261)
T COG3885          80 YKNDRELADKIYEEAKGQ-F-PLVCITFSILKGNYSRCPLDWGSLIPLYFLK---RRRIVLLTPAR-LSREILVKFGDNL  153 (261)
T ss_pred             hhccHHHHHHHHHHhccC-C-ceEEEechhhcCcCCccccccccccchhhcc---ceeEEEechhh-ccHHHHHHHHHHH
Confidence            577999999999998765 6 432   1      145789999999999994   55688888775 9999999999999


Q ss_pred             cccc---cCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHH
Q 042295          151 APLK---DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLH  227 (264)
Q Consensus       151 ~~~~---d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~  227 (264)
                      .++-   +++|.+|.|++.+|.....+  |+|+.+.+++||+.+++.+.+||.++|++++.+    -.+.+.+|.|++++
T Consensus       154 ~~~le~~~~ki~lIiSaD~aHth~edG--PYGYs~~se~yDk~iv~~lks~n~e~l~~iD~~----~I~~Akpdsy~sll  227 (261)
T COG3885         154 GKALEEYERKISLIISADHAHTHDEDG--PYGYSEESEEYDKIIVDSLKSGNFEALLSIDDE----VIAEAKPDSYWSLL  227 (261)
T ss_pred             HHHHHHhhcceEEEEecccccccCCCC--CCCCChhHHHHHHHHHHHhcccCHHHHHhccHH----HHHhcCCchHHHHH
Confidence            9973   67999999999999998865  899999999999999999999999999999654    34555579999999


Q ss_pred             HHhcccCCC-CceeEe
Q 042295          228 VAMGAAGED-AKAEQI  242 (264)
Q Consensus       228 ~a~Ga~~~~-~~~~~~  242 (264)
                      +++|..... .|.++.
T Consensus       228 i~lgiLe~~~~K~~~~  243 (261)
T COG3885         228 ILLGILEESPRKMSLV  243 (261)
T ss_pred             HHHHHHhcccccceEE
Confidence            999998642 344433

>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility

Probab=99.86  E-value=1.2e-20  Score=169.08  Aligned_cols=204  Identities=17%  Similarity=0.139  Sum_probs=149.8

Q ss_pred             EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCCC
Q 042295            3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPG   82 (264)
Q Consensus         3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g   82 (264)
                      ++..+|.+....-   .-+..+++.+.    ..+||+|||++||.......+.+.........++           +.+.
T Consensus        38 ~~i~PHagy~ysG---~~aa~ay~~l~----~~~p~~vvilgP~H~~~~~~~~~~~~~~~~TPlG-----------~v~v   99 (266)
T cd07361          38 AIIVPHAGYVYSG---PVAAHAYAALD----PGKPKRVVILGPSHTGYGRGCALSSAGAWETPLG-----------DVPV   99 (266)
T ss_pred             EEEeCCCCccccH---HHHHHHHHHhc----cCCCCEEEEECCCCCCCCCceeeCCCCCeeCCCc-----------CCcc
Confidence            3566776643321   23345566654    5789999999996544434444433222111222           4577


Q ss_pred             CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC-CCCCeeeeeCCCCCChHHHHHHHHHhccc-ccCCeEE
Q 042295           83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPL-KDEGVLI  160 (264)
Q Consensus        83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~-~d~~v~i  160 (264)
                      |.+++++|.+..   +++ .........|||+.|||.|+..- .++|||||.++ ..++++++++|++|+++ .+++++|
T Consensus       100 d~~l~~~L~~~~---~~~-~~~~~~~~~EHs~EvqLpfLq~~~~~~~iVPi~vg-~~~~~~~~~~g~~l~~~~~~~~~~i  174 (266)
T cd07361         100 DRELVEELLKLG---GFI-VDDELAHEEEHSLEVQLPFLQYLLPDFKIVPILVG-DQSPEAAEALAEALSKYLLDPDTLI  174 (266)
T ss_pred             CHHHHHHHHhcC---Ccc-ccCcchhhhhceeeeHHHHHHHHcCCCeEEEEEeC-CCCHHHHHHHHHHHHHHhcCCCeEE
Confidence            999999998664   553 32235677999999999997432 49999999997 67999999999999998 6889999


Q ss_pred             EEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC--Cc
Q 042295          161 IGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED--AK  238 (264)
Q Consensus       161 IaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~--~~  238 (264)
                      |+||++||++..         +.+++||+.+++.|+++|.+.++++..+      ...+.|++.|+.++++++...  .+
T Consensus       175 V~SsDlSH~~~~---------~~a~~~D~~~i~~i~~~d~~~~~~~~~~------~~~~~CG~~~i~~~l~~~~~~~~~~  239 (266)
T cd07361         175 VISSDFSHYGPR---------ESAERLDRKAIEAILALDPEGFYEYLRE------TGNTACGRGPIAVLLEAAKELGALK  239 (266)
T ss_pred             EEeCCCCCcCCH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHh------cCCceECHHHHHHHHHHHHhcCCCE
Confidence            999999998765         5689999999999999999999998543      125689999999999987643  36


Q ss_pred             eeEecc
Q 042295          239 AEQIHQ  244 (264)
Q Consensus       239 ~~~~~~  244 (264)
                      ++++..
T Consensus       240 ~~ll~Y  245 (266)
T cd07361         240 AELLDY  245 (266)
T ss_pred             EEEeee
Confidence            676653

This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia

>PRK00782 hypothetical protein; Provisional

Probab=99.78  E-value=2.5e-17  Score=147.93  Aligned_cols=190  Identities=18%  Similarity=0.172  Sum_probs=135.4

Q ss_pred             CCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeE
Q 042295           36 KPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAW  115 (264)
Q Consensus        36 ~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~  115 (264)
                      +||+|||++||.......+++....  +    .-|=      -+.+.|.+++++|...+    +  ...+.....||+.-
T Consensus        63 ~p~~vvilGp~H~~~~~~~av~~~~--~----~TPl------G~v~vD~~l~~~L~~~~----~--~~~~~ah~~EHSiE  124 (267)
T PRK00782         63 EAETFVIIGPNHTGLGSPVAVSPEG--W----KTPL------GDVEVDEELAKALASGI----I--DLDELAHKYEHSIE  124 (267)
T ss_pred             CCCEEEEECCCCCCCCCCeEEecCc--c----cCCC------cCCcCCHHHHHHHHHhh----h--ccchhhhhhhceEE
Confidence            4999999998544555556554322  1    1121      14677999999997222    1  11122356799999


Q ss_pred             eecccccc--CCCCCeeeeeCCCCCChHHHHHHHHHhccc-c--cCCeEEEEecCCcccccccccCCCCCcchHHHHHHH
Q 042295          116 TPLMLMYP--EANIPVCQLSLQPEKDGTYHYNVGKALAPL-K--DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCW  190 (264)
Q Consensus       116 vPL~~l~p--~~diPVV~is~~~~~~~~~~~~lG~aL~~~-~--d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~  190 (264)
                      |+|-|+..  ..++|||||.++ ..++++++++|++|+++ +  +++++||+||++||+...         +.+++||+.
T Consensus       125 vqlPFLq~~~~~~~~iVPI~vg-~~~~~~~~~lg~~L~~~~~~~~~~vliIaSsDlSH~~~~---------~~a~~~D~~  194 (267)
T PRK00782        125 VQLPFLQYLFGKDFKIVPICLG-MQDEETAREVGEAIAEAIEELGKKVVVIASSDFTHYEPA---------ERAKEKDMI  194 (267)
T ss_pred             ecHHHhhHhhcCCCeEEEEEcC-CCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCH---------HHHHHHHHH
Confidence            99955532  358999999998 78999999999999986 3  679999999999997642         567999999


Q ss_pred             HHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC--CceeEeccc-------eeccceeeeEEEec
Q 042295          191 LKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED--AKAEQIHQS-------WQLCSLSCSSYKFT  259 (264)
Q Consensus       191 ~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~--~~~~~~~~~-------~~~~~~s~~~~~~~  259 (264)
                      +++.|+++|.+.|.+...      ..+.+.|++.|+.++++++..-  .+++++...       -.--+.++.++.|.
T Consensus       195 ~i~~I~~~d~~~l~~~~~------~~~~~~CG~~pi~~~l~~~~~~g~~~~~ll~Y~~S~d~~~~~~~vVgYa~~~~~  266 (267)
T PRK00782        195 LIEAILDLDVDGFYDEIY------RMNATACGYGPIAAMMTYSKKLGASKAELLHYATSGDVSGDTSAVVGYAAIVFR  266 (267)
T ss_pred             HHHHHHcCCHHHHHHHHH------hcCCceECHHHHHHHHHHHHhcCCCeEEEeeecCccCCCCCCCccEEeeEEEEE
Confidence            999999999999987632      2334689999999999887532  256666521       11225566666653

>COG1355 Predicted dioxygenase [General function prediction only]

Probab=98.95  E-value=2.5e-08  Score=88.80  Aligned_cols=177  Identities=17%  Similarity=0.223  Sum_probs=124.8

Q ss_pred             CCCCEEEEEcC-CCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcce
Q 042295           35 QKPNSILVISA-HWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHG  113 (264)
Q Consensus        35 ~~Pd~IVviS~-Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG  113 (264)
                      .+||+|||++| |.- .+..+.+....       ++--.|    -++..|.|+++.|.+.   .++. ..........|+
T Consensus        73 ~~~~~vVIlGPnHtg-~g~~vsv~~~g-------~w~TPL----G~v~vD~e~~~~l~~~---~~~~-~~D~~ah~~EHS  136 (279)
T COG1355          73 GEPDTVVILGPNHTG-LGSPVSVSPEG-------EWETPL----GDVKVDSELAEELVKH---SGII-DLDELAHLYEHS  136 (279)
T ss_pred             CCCCEEEEECCCCCC-CCCceEEecCC-------ccccCC----CCeeeCHHHHHHHHHh---cCCC-Cchhhhhhhhce
Confidence            78999999988 643 33334443211       111111    1345699999998877   2442 111223445787


Q ss_pred             eEee---ccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccc-cC-CeEEEEecCCcccccccccCCCCCcchHHHHH
Q 042295          114 AWTP---LMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLK-DE-GVLIIGSGSATHNLKALQFDGDSVVSWASEFD  188 (264)
Q Consensus       114 ~~vP---L~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~-d~-~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD  188 (264)
                      .=|=   |.++|++ ++.||||.+. ..+.+...++|++|.++. +. +++||+|=+.+|...         ....+++|
T Consensus       137 iEvQlPFLqy~f~~-~fKIVPi~m~-~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HYep---------~~~~~~~D  205 (279)
T COG1355         137 IEVQLPFLQYLFGD-EFKIVPICMG-MQDKEVARDIGRAIAKVIKELGDALIIASSDFTHYEP---------QDIVRRKD  205 (279)
T ss_pred             EEeehHHHHHHccC-CcEEEeEEEe-cccHHHHHHHHHHHHHHHhhcCCeEEEEecCccccCc---------hhhhhhhH
Confidence            6654   4556766 8999999997 789999999999999984 44 599999999999843         25568999


Q ss_pred             HHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccC--CCCceeEecc
Q 042295          189 CWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAG--EDAKAEQIHQ  244 (264)
Q Consensus       189 ~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~--~~~~~~~~~~  244 (264)
                      +.++++|++.|.+.+..+.+      ..+.|.|++-|+.+.+=++.  +..+.++++.
T Consensus       206 ~~~I~~I~~~d~~g~~~~~~------~~n~t~CG~gpi~~~l~~~k~~g~~~~~ll~y  257 (279)
T COG1355         206 RILIKAILALDLDGFYELLE------RTNATMCGYGPIAVLLEASKKLGAKEAKLLDY  257 (279)
T ss_pred             HHHHHHHHhcCHHHHHHHHH------hcCCccccccHHHHHHHHHHHcCcccceeecc
Confidence            99999999999999998843      45667899999888876542  2235666653

>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life

Probab=98.79  E-value=8.6e-09  Score=93.11  Aligned_cols=186  Identities=20%  Similarity=0.239  Sum_probs=104.8

Q ss_pred             cCCCCEEEEEcC-CCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcc
Q 042295           34 LQKPNSILVISA-HWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDH  112 (264)
Q Consensus        34 ~~~Pd~IVviS~-Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDH  112 (264)
                      ..+||.|||++| |..... .+.+... ..    +..|  +    -+.+.|.+++++|.+....  +  ...+.....+|
T Consensus        59 ~~~~~~vvilGpsH~~~~~-~~~~~~~-~~----~~TP--l----G~v~vD~e~~~~L~~~~~~--~--~~~~~~h~~EH  122 (276)
T PF01875_consen   59 ESKPKRVVILGPSHTGYGD-GIAVSPF-DS----WETP--L----GEVPVDSELAEELAKNFPF--F--EFDDEAHEEEH  122 (276)
T ss_dssp             TTT--EEEEEEE-SSS--S-SEEE-SS-SE----E--S--S------EEB-HHHHHHHHHTT-E-----EE--HHHHH--
T ss_pred             hcCCCEEEEECCCccCCCC-CeEeccC-Ce----EECC--C----cccccCHHHHHHHHhcCCC--c--ccchhhccccC
Confidence            357888888876 764432 2333221 10    1112  1    1345688888888775321  1  11111124466


Q ss_pred             eeEee---ccccccC-CCCCeeeeeCCCCCChHHHHHHHHHhccc-ccCCeEEEEecCCcccccccccCCCCCcchHHH-
Q 042295          113 GAWTP---LMLMYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPL-KDEGVLIIGSGSATHNLKALQFDGDSVVSWASE-  186 (264)
Q Consensus       113 G~~vP---L~~l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~-~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~-  186 (264)
                      ..=+-   |++++|+ .+++||||.+. ..+.+.+.++|++|.++ ++++++||+|-++||.....+..+ ...+.+++ 
T Consensus       123 SlEvqlPFLq~~~~~~~~~~IVPI~vg-~~~~~~~~~~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~-~~~~~~~~~  200 (276)
T PF01875_consen  123 SLEVQLPFLQYLFPDRRDFKIVPILVG-DQSPETAKELAEALAEYLKDEGTLIVASSDFSHYGPRFGDAP-KPEEIAEKI  200 (276)
T ss_dssp             TTGGGHHHHHHHTGGGTS-EEEEEEE--S--HHHHHHHHHHHHHHHTSTTEEEEEE----EEBGGGT--G-GGSSHHHHH
T ss_pred             cEEEHHHHHHHHhccCCceEEEEEEec-CCCHHHHHHHHHHHHHHHcCCCEEEEEeCccccccccccCCC-CCHHHHHHH
Confidence            66555   4556787 68999999997 67888899999999997 577899999999999886544211 12234444 


Q ss_pred             --HHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC--CCceeEec
Q 042295          187 --FDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE--DAKAEQIH  243 (264)
Q Consensus       187 --FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~--~~~~~~~~  243 (264)
                        .|+..++.|+++|.+.+.+.-+      ..+.+-|++-|+.+++-++..  ..++++++
T Consensus       201 ~~~D~~~i~~i~~~d~~~~~~~~~------~~~~t~CG~~pi~~~l~~~~~~~~~~~~ll~  255 (276)
T PF01875_consen  201 EALDREAIEAIEALDPEGFYEYLK------ETNNTACGRGPIAVLLEAAKALGAWKGELLD  255 (276)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH------HH----TTHHHHHHHHHHHHHHHCEEEEEEE
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHH------HcCCceechHHHHHHHHHHHHcCCCeEEEee
Confidence              4999999999999999988632      334558999999998876542  13566654

The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.

>KOG3086 consensus Predicted dioxygenase [General function prediction only]

Probab=95.72  E-value=0.056  Score=47.80  Aligned_cols=101  Identities=13%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             CCCeeeeeCCCCCChHHHHHHHHHhccc-ccCCeEEEEecCCcccccccccCCCC-----CcchHHHHHHHHHHHHHcCC
Q 042295          126 NIPVCQLSLQPEKDGTYHYNVGKALAPL-KDEGVLIIGSGSATHNLKALQFDGDS-----VVSWASEFDCWLKDALLQGR  199 (264)
Q Consensus       126 diPVV~is~~~~~~~~~~~~lG~aL~~~-~d~~v~iIaSG~lsH~l~~~~~~~~~-----~~~~~~~FD~~~~~~l~~gd  199 (264)
                      .+.||||-+. .+++..--..|+.|++. .|.+=+++-|-+.-||=+..+...+.     -..--+..|+.=++.|+..|
T Consensus       148 ~~kivPilvg-~ls~~~e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iiet~~  226 (296)
T KOG3086|consen  148 TVKIVPILVG-ALSPSVEQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIETLD  226 (296)
T ss_pred             eEEEEeeEec-ccChHHHHHHHHHHHHHhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhhcCC
Confidence            4789999998 78898899999999997 57777888899999998766532111     12334779999999999999


Q ss_pred             HHHHhcchhhCCcchhcCCCCcchHHHHHHhccc
Q 042295          200 YEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAA  233 (264)
Q Consensus       200 ~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~  233 (264)
                      .++.-+|-+      .-+.|-|+--|+-++|+|+
T Consensus       227 pdaf~~YLk------~~~NTICGr~PI~v~l~a~  254 (296)
T KOG3086|consen  227 PDAFSEYLK------KTQNTICGRHPISVILSAL  254 (296)
T ss_pred             hHHHHHHHH------HhCCccccCccHHHHHHHH
Confidence            999888843      4567789999999999865

>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase

Probab=83.42  E-value=19  Score=32.38  Aligned_cols=105  Identities=15%  Similarity=0.197  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCCC-CCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHH-hCCCCcccccCCCCCcc
Q 042295           35 QKPNSILVISAHWE-TDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLR-TSGFNHVKEDTKRGLDH  112 (264)
Q Consensus        35 ~~Pd~IVviS~Hw~-~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~-~~gid~~~~~~~~~lDH  112 (264)
                      .+-...|+|+.|-. ...+....          ...|+......+....+++|++.+.+.++ +.|+ .+..+..+   .
T Consensus       136 ~~~g~~~liD~HSm~s~~p~~~~----------g~~pd~~lG~~~G~s~~~~l~~~l~~~l~~~~g~-~v~~N~Py---~  201 (263)
T TIGR02017       136 AQHGYAVLYDAHSIRSVIPRLFE----------GKLPDFNIGTNDGASCDPALTDAVEAVCAKATGY-SHVLNGRF---K  201 (263)
T ss_pred             HhCCCEEEEEeccCCccCCCcCC----------CCCCCEEEeCCCCCCCCHHHHHHHHHHHHhcCCc-eEEeCCCC---C
Confidence            45567788999933 22111110          11234333344455569999999999996 6788 46544333   6


Q ss_pred             eeEeeccccccCCCCCeeeeeCCCC--CC---------hHHHHHHHHHhccc
Q 042295          113 GAWTPLMLMYPEANIPVCQLSLQPE--KD---------GTYHYNVGKALAPL  153 (264)
Q Consensus       113 G~~vPL~~l~p~~diPVV~is~~~~--~~---------~~~~~~lG~aL~~~  153 (264)
                      |.++.-+|=.|+..+..|||-+|..  ++         .++.-+|.+.|+.+
T Consensus       202 Gg~itr~yg~p~~~vhaiQiEi~r~lYm~e~~~~~~~~~~~~~~l~~~l~~~  253 (263)
T TIGR02017       202 GGWITRHYGQPQNGVHAVQMELAQRGYMAEEAEPFAYRPDRAAPLRAVLKQL  253 (263)
T ss_pred             CcceecccCCCCCCCceEeeeEchhhhcCCCCCCCCcCHhHHHHHHHHHHHH
Confidence            7888888888999999999999853  22         22555555555554

In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.

>PRK03995 hypothetical protein; Provisional

Probab=82.83  E-value=18  Score=32.63  Aligned_cols=114  Identities=22%  Similarity=0.324  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCCC-CCCCeEEEec--CCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCC----CCcccccCCC
Q 042295           36 KPNSILVISAHWE-TDVPTVNVVR--QNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSG----FNHVKEDTKR  108 (264)
Q Consensus        36 ~Pd~IVviS~Hw~-~~~~~i~~~~--~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~g----id~~~~~~~~  108 (264)
                      ++|.||++|=|-- +..+.+|+..  ++ .--+|+|-|.++      ++.+|.+...+.+.+++..    ++ +....  
T Consensus        63 ~~d~iIflSRH~s~~~~p~LTvH~tGN~-~~a~~GG~p~~l------a~a~P~~~~~lL~~l~~~~~~~~ye-vt~Ea--  132 (267)
T PRK03995         63 KGEYIIFLSRHSSKAKKPSLTVHTPGNP-GEASYGGKPKEL------AIANPRLMTSLLRNLKKLAKELGFE-VTFEA--  132 (267)
T ss_pred             CCCEEEEEecccCCCCCceEEEECCCCC-chhhcCCCCCcc------ccCCHHHHHHHHHHHHHhcCCCCcE-EEEEc--
Confidence            8899999999964 5567777754  22 333688888764      5678998888888775433    32 32211  


Q ss_pred             CCcceeEeecccccc-CCCCCeeeeeCCCCC----ChHHHHHHHHHhcccc-----cCCeEEEEecCCcccc
Q 042295          109 GLDHGAWTPLMLMYP-EANIPVCQLSLQPEK----DGTYHYNVGKALAPLK-----DEGVLIIGSGSATHNL  170 (264)
Q Consensus       109 ~lDHG~~vPL~~l~p-~~diPVV~is~~~~~----~~~~~~~lG~aL~~~~-----d~~v~iIaSG~lsH~l  170 (264)
                       -=||         | +.+.|.+=|=|....    +++.+-.+.+++-++.     ++...+||-||. |--
T Consensus       133 -THHG---------Pt~l~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGg-HYa  193 (267)
T PRK03995        133 -THHG---------PTELKVPSVFVEIGSTEEEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGG-HYA  193 (267)
T ss_pred             -cccC---------CCCCCCCeEEEEeCCCHHHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCC-Ccc
Confidence             1233         4 378898888887542    5666677777766652     345678899987 643

>PRK05723 flavodoxin; Provisional

Probab=81.08  E-value=6.8  Score=32.07  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCC-CCChHHHHHHHHHhc-----ccccC
Q 042295           83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP-EKDGTYHYNVGKALA-----PLKDE  156 (264)
Q Consensus        83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~-~~~~~~~~~lG~aL~-----~~~d~  156 (264)
                      ..++|++|.+.+.+.|++ +.......++     .+.- + +.+.=|+-+|.-. .-.|.....|=+.|.     .+.+.
T Consensus        14 ae~~A~~la~~l~~~g~~-~~~~~~~~~~-----~~~~-~-~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~   85 (151)
T PRK05723         14 AEEVARHAESLLKAAGFE-AWHNPRASLQ-----DLQA-F-APEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGL   85 (151)
T ss_pred             HHHHHHHHHHHHHHCCCc-eeecCcCCHh-----HHHh-C-CCCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCC
Confidence            456889999999888884 4321111110     0000 0 1121133333321 123555555555555     35678


Q ss_pred             CeEEEEecCCcc
Q 042295          157 GVLIIGSGSATH  168 (264)
Q Consensus       157 ~v~iIaSG~lsH  168 (264)
                      +++|+|.|+.++
T Consensus        86 ~~aVfGLGDs~Y   97 (151)
T PRK05723         86 PGAVIALGDSSY   97 (151)
T ss_pred             EEEEEeEeCCcc
Confidence            999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
2pw6_A	271	Crystal Structure Of Uncharacterized Protein Jw3007		1e-39

>pdb|2PW6|A Chain A, Crystal Structure Of Uncharacterized Protein Jw3007 From Escherichia Coli K12 Length = 271

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 136/234 (58%), Gaps = 12/234 (5%)
Query: 4   FFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTI 63
            F+ HGSP   ++++L  R + K       L +P +I+V+SAHW T    V       TI
Sbjct: 18  LFLGHGSPXNVLEDNLYTRSWQKL---GXTLPRPQAIVVVSAHWFTRGTGVTAXETPPTI 74
Query: 64  YDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYP 123
           +DF GFP+ LY   YPAPG+P LA+R+ ELL        KE    G DHG+W  L+  YP
Sbjct: 75  HDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWGVLIKXYP 132
Query: 124 EANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV-VS 182
           +A+IP  QLS+   K   +H+  G+ LA L+DEG+ ++ SG+  HNL+ +++ GDS    
Sbjct: 133 DADIPXVQLSIDSSKPAAWHFEXGRKLAALRDEGIXLVASGNVVHNLRTVKWHGDSSPYP 192
Query: 183 WASEFDCWLKDALL-QGRYED---VNHYEEKAPYGKMAHPSPEHFYPLHVAMGA 232
           WA+ F+ ++K  L  QG  E    VN+ + +   G +++P+PEH+ PL   +GA
Sbjct: 193 WATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPLLYVLGA 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
2pw6_A	271	Uncharacterized protein YGID; JW3007, escherichia	2e-88
1b4u_B	302	LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra	3e-26

>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1 Length = 271

 Score =  262 bits (671), Expect = 2e-88
 Identities = 87/261 (33%), Positives = 140/261 (53%), Gaps = 8/261 (3%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           M   F+ HGSP   ++++       +       L +P +I+V+SAHW T    V  +   
Sbjct: 15  MPALFLGHGSPMNVLEDN-LYTRSWQKLGMT--LPRPQAIVVVSAHWFTRGTGVTAMETP 71

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
            TI+DF GFP+ LY   YPAPG+P LA+R+ ELL         +    G DHG+W  L+ 
Sbjct: 72  PTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTL--DKEAWGFDHGSWGVLIK 129

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDS- 179
           MYP+A+IP+ QLS+   K   +H+ +G+ LA L+DEG++++ SG+  HNL+ +++ GDS 
Sbjct: 130 MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS 189

Query: 180 VVSWASEFDCWLKDALLQGRYEDVNHYE--EKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
              WA+ F+ ++K  L      + +          G +++P+PEH+ PL   +GA     
Sbjct: 190 PYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQE 249

Query: 238 KAEQIHQSWQLCSLSCSSYKF 258
                 +  ++ SLS  S + 
Sbjct: 250 PITIPVEGIEMGSLSMLSVQI 270

>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B Length = 302

 Score =  103 bits (257), Expect = 3e-26
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 32/259 (12%)

Query: 4   FFISH-----GSPTLPIDESLQVRHFLKAWKE-----QVFLQKPNSILVISA-HWETDVP 52
              SH      +      ++       K ++      +     P+ ++++   H      
Sbjct: 8   ITSSHIPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDM 67

Query: 53  TVNVVRQNDTIYDFYGFPEQLY-KLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLD 111
            +           F    E    +      G PDLA  + + L    F  +    +  +D
Sbjct: 68  NIIPTFAIGCAETFKPADEGWGPRPVPDVKGHPDLAWHIAQSLILDEF-DMTIMNQMDVD 126

Query: 112 HGAWTPLMLMYPEAN---IPVCQLSL----QPEKDGTYHYNVGKAL-----APLKDEGVL 159
           HG   PL +++ E       V    +     P   G   + +G ++     +  +D  V 
Sbjct: 127 HGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVH 186

Query: 160 IIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPS 219
           + G+G  +H L+  +           EFD    D  L    E+++       Y + +   
Sbjct: 187 VWGTGGMSHQLQGPRAG-----LINKEFDLNFIDK-LISDPEELSKMPH-IQYLRESGSE 239

Query: 220 PEHFYPLHVAMGAAGEDAK 238
                   +  GA  E  +
Sbjct: 240 GVELVMWLIMRGALPEKVR 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2pw6_A	271	Uncharacterized protein YGID; JW3007, escherichia	100.0
3vsj_B	312	2-amino-5-chlorophenol 1,6-dioxygenase beta subun;	100.0
1b4u_B	302	LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra	100.0
3vsj_A	271	2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU;	100.0
3bcz_A	293	Protein MEMO1; alpha/beta structure, peptide bindi	99.72
2gfq_A	298	UPF0204 protein PH0006; structural genomics, PSI,	80.07

>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1

Probab=100.00  E-value=1.4e-74  Score=517.53  Aligned_cols=253  Identities=34%  Similarity=0.654  Sum_probs=222.7

Q ss_pred             CcEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCC
Q 042295            1 METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPA   80 (264)
Q Consensus         1 ~p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~   80 (264)
                      ||++|||||+|++.+++ +++.++|+++++++.  +||+|||||+||++..++|+++++++++|||+|||+++|+++|++
T Consensus        15 ~P~~flsHGsP~~~~~~-~~~~~~l~~l~~~l~--~P~aIvviSaHw~~~~~~V~~~~~~~~i~Df~gfp~~ly~~~y~~   91 (271)
T 2pw6_A           15 MPALFLGHGSPMNVLED-NLYTRSWQKLGMTLP--RPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPA   91 (271)
T ss_dssp             CCEEEEECC-CCCCSSC-CHHHHHHHHHHHHSC--CCSEEEEEEEEEEESSEEEECCCC-------------CCSCCCCC
T ss_pred             CCEEEECCCCCccCCCc-hHHHHHHHHHHHhCC--CCCEEEEEcCCCCCCceEEEeCCCCCCcCCcCcCCCcCcccccCC
Confidence            79999999999999954 689999999999984  999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEE
Q 042295           81 PGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLI  160 (264)
Q Consensus        81 ~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~i  160 (264)
                      +|+|+||++|++.|.++||+ +.. .++++|||+||||++|||++|+||||||+|...++++||+||++|+++||+||+|
T Consensus        92 ~g~peLA~~i~~~l~~~g~~-~~~-~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd~~VlI  169 (271)
T 2pw6_A           92 PGSPALAQRLVELLAPIPVT-LDK-EAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML  169 (271)
T ss_dssp             CBCHHHHHHHHHHHTTSCEE-EES-SCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCc-ccc-cccCCCcchhhhHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCcEE
Confidence            99999999999999999995 554 7899999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcccccccccC-CCCCcchHHHHHHHHHHHHH-cC--CHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC
Q 042295          161 IGSGSATHNLKALQFD-GDSVVSWASEFDCWLKDALL-QG--RYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED  236 (264)
Q Consensus       161 IaSG~lsH~l~~~~~~-~~~~~~~~~~FD~~~~~~l~-~g--d~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~  236 (264)
                      ||||++||||+..+++ +.+..+|+++||+|++++|+ +|  |.++|++|.. .|.++.+||+.|||+|+++++||++++
T Consensus       170 igSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~l~~~g~~d~~~L~~~~~-~~~a~~a~p~~eh~~pl~~alGa~~~~  248 (271)
T 2pw6_A          170 VASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLD-HEGGTLSNPTPEHYLPLLYVLGAWDGQ  248 (271)
T ss_dssp             EEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGGG-STTHHHHCSSSTTTHHHHHHHHTCCSS
T ss_pred             EEeCccccCCCcccccCcCCCCchHHHHHHHHHHHHHhcCCcCHHHHhCccc-ChhHHHhCCchHhHHHHHHHHhCCCCC
Confidence            9999999999988763 23566899999999999999 99  9999999964 499999999999999999999999877


Q ss_pred             CceeEeccceeccceeeeEEEec
Q 042295          237 AKAEQIHQSWQLCSLSCSSYKFT  259 (264)
Q Consensus       237 ~~~~~~~~~~~~~~~s~~~~~~~  259 (264)
                      .+.++++++|.+||+||+||+|+
T Consensus       249 ~~~~~~~~~~~~g~l~~~~~~~~  271 (271)
T 2pw6_A          249 EPITIPVEGIEMGSLSMLSVQIG  271 (271)
T ss_dssp             SCEECSCCCEETTTEECCCEEEC
T ss_pred             CCeEEEecceeeccceEEEEEEC
Confidence            77888999999999999999995

>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*

Probab=100.00  E-value=3.7e-47  Score=346.48  Aligned_cols=235  Identities=18%  Similarity=0.145  Sum_probs=191.5

Q ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEec-CCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC
Q 042295           19 LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVR-QNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS   97 (264)
Q Consensus        19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~-~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~   97 (264)
                      +++.++|+++++++.+.+||+|||||+||.+....+.+.. ....+||+++||+. |+++|+++||++||++|++.+.+.
T Consensus        35 ~~~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~~~~f~~f-~~~~y~~~gd~eLA~~i~~~l~~~  113 (312)
T 3vsj_B           35 EVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSVDPIFPNV-FRYDFSLNVDVELAEACAEEGRKA  113 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEECSSCTTT-CEEEEEEEBCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCccccccCCCcc-CcccCCCCCCHHHHHHHHHHHHHc
Confidence            5789999999999988899999999999999887766632 22346777777743 689999999999999999999999


Q ss_pred             CCCcccc--cCCCCCcceeEeeccccccCCCCCeeeeeCCC---CCChH----HHHHHHHHhccc---ccCCeEEEEecC
Q 042295           98 GFNHVKE--DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP---EKDGT----YHYNVGKALAPL---KDEGVLIIGSGS  165 (264)
Q Consensus        98 gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~---~~~~~----~~~~lG~aL~~~---~d~~v~iIaSG~  165 (264)
                      ||| +..  +.++++|||+||||++|+|+.++||||||++.   ..+++    +|++||++|+++   +|+||+|||||+
T Consensus       114 g~~-~~~~~~~~~~lDHG~~vpL~~l~p~~~~pVVpis~~~~p~~~~~~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~  192 (312)
T 3vsj_B          114 GLV-TKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLNTKEGMSEMDVLGKATREAIRKTGRKAVLLASNT  192 (312)
T ss_dssp             TCC-EEEECCTTCCCCHHHHHHHHHHCTTCCSCEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCc-eeeccCccccCCcchHhHHHHhCCCCCCCEEEEeecCCCCCCChhhhHHHHHHHHHHHHHHHHhcCCCEEEEEECc
Confidence            996 643  67899999999999999999999999999985   48888    999999999997   389999999999


Q ss_pred             CcccccccccCC-------CCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC-CC
Q 042295          166 ATHNLKALQFDG-------DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE-DA  237 (264)
Q Consensus       166 lsH~l~~~~~~~-------~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~-~~  237 (264)
                      +|||+...++..       .++.+|+++||+|++++|+++|.++|+++..+  ..+.+++ +|++.++.+++||++. ..
T Consensus       193 lsH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD~~~L~~~~~e--~~~~a~g-~cG~~~~~~l~gAl~~~~~  269 (312)
T 3vsj_B          193 LSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGKTSEVFKLLPQ--FIDEAFA-EVKSGAFTWMHAAMQYPEL  269 (312)
T ss_dssp             SCCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHHHTC-GGGGSHHHHHHHHTTCCCC
T ss_pred             ccccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCCHHHHHhCCHH--HHHHhcc-ccCHHHHHHHHHHhcCCCC
Confidence            999998643210       23468999999999999999999999999643  2233444 7999999999999875 34


Q ss_pred             ceeEeccceeccceeeeEEEec
Q 042295          238 KAEQIHQSWQLCSLSCSSYKFT  259 (264)
Q Consensus       238 ~~~~~~~~~~~~~~s~~~~~~~  259 (264)
                      +++++.+.-.+| .++.+-.|.
T Consensus       270 ~~~ll~Y~~s~g-vGy~~~~~~  290 (312)
T 3vsj_B          270 AAELFGYGTVIG-TGNAVMEWD  290 (312)
T ss_dssp             CCEEEEEEEETT-EEEEEEEEE
T ss_pred             cceEEeeECCcc-ceEEEEEEE
Confidence            577765544444 555555554

>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B

Probab=100.00  E-value=3.6e-46  Score=338.58  Aligned_cols=222  Identities=18%  Similarity=0.203  Sum_probs=184.6

Q ss_pred             EEEEcCCCCCCCCC-------CC---hHHHHHHHHHHHHhhc--CCCCEEEEEcC-CCCCC-C-----CeEEEecCCCcc
Q 042295            3 TFFISHGSPTLPID-------ES---LQVRHFLKAWKEQVFL--QKPNSILVISA-HWETD-V-----PTVNVVRQNDTI   63 (264)
Q Consensus         3 ~~fisHG~P~~~~~-------~~---~~~~~~l~~l~~~l~~--~~Pd~IVviS~-Hw~~~-~-----~~i~~~~~~~~~   63 (264)
                      .+.+||  ||+++.       +.   .++.++++++++++++  .+||+|||||| ||... .     .+|+..+.++ +
T Consensus         7 ~~~~sH--~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~~~~~-~   83 (302)
T 1b4u_B            7 GITSSH--IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFK-P   83 (302)
T ss_dssp             EEEECC--CHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEEC-B
T ss_pred             EeECCC--CCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecCCCCc-c
Confidence            467899  665541       11   4788999999999987  89999999999 55332 2     3455565566 7


Q ss_pred             CCCCCCccccccccC-CCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCCCC
Q 042295           64 YDFYGFPEQLYKLKY-PAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPEKD  139 (264)
Q Consensus        64 ~D~~gfP~~~y~~~y-~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~~~  139 (264)
                      |||+++|     ++| +++||++||++|++.+.+.|+| +..+.++++|||+||||.+|+|+.|   +||||||++...+
T Consensus        84 ~d~~~G~-----~~~~~~~G~peLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~  157 (302)
T 1b4u_B           84 ADEGWGP-----RPVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTY  157 (302)
T ss_dssp             CBCSSSB-----CSSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSS
T ss_pred             CcccCCC-----cCCCCCCCCHHHHHHHHHHHHhcCCC-eeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCC
Confidence            9986555     357 8999999999999999999996 6666779999999999999999987   9999999997664


Q ss_pred             ----hHHHHHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhC
Q 042295          140 ----GTYHYNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKA  210 (264)
Q Consensus       140 ----~~~~~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~  210 (264)
                          +++||+||++|+++     +|+||+|||||++|||+...+++     .|+++||+|++++| ++|.++|+++. +.
T Consensus       158 p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~~~g-----~~~~~fD~~~~~~l-~~d~~~L~~~~-~~  230 (302)
T 1b4u_B          158 PPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAG-----LINKEFDLNFIDKL-ISDPEELSKMP-HI  230 (302)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTT-----BCCHHHHHHHHHHH-HHCHHHHTTCC-HH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCcCc-----cchHHHHHHHHHHH-ccCHHHHHhcc-cc
Confidence                59999999999987     57899999999999999875432     57899999999999 99999999995 35


Q ss_pred             CcchhcCCCCcchHHHHHHhcccCCCCceeE
Q 042295          211 PYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQ  241 (264)
Q Consensus       211 p~~~~ahp~~~h~~pl~~a~Ga~~~~~~~~~  241 (264)
                      +.++.+||+.+|++||++++||++.. +.++
T Consensus       231 ~~a~~ag~~~~~~~~~~~~~GA~~~~-~~~~  260 (302)
T 1b4u_B          231 QYLRESGSEGVELVMWLIMRGALPEK-VRDL  260 (302)
T ss_dssp             HHHHHHCTTGGGGHHHHHHHHTSCSC-EEEE
T ss_pred             hHHHHcCCChhHHHHHHHHHHcCCCC-CCcE
Confidence            67788999888899999999999764 3443

>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*

Probab=100.00  E-value=8.9e-46  Score=331.11  Aligned_cols=235  Identities=16%  Similarity=0.163  Sum_probs=195.7

Q ss_pred             EEEEcCCCCC--CCCCCC---hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEec-CCCccCCCCCCccccccc
Q 042295            3 TFFISHGSPT--LPIDES---LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVR-QNDTIYDFYGFPEQLYKL   76 (264)
Q Consensus         3 ~~fisHG~P~--~~~~~~---~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~-~~~~~~D~~gfP~~~y~~   76 (264)
                      ++++||  ||  +++++.   +++.++++++++++.+.+||+||||||||.+....++++. +....+++++|| .++++
T Consensus         6 a~~~pH--~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~g~~   82 (271)
T 3vsj_A            6 AFLVPG--TPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EFGDL   82 (271)
T ss_dssp             EEEECC--CSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GGCCE
T ss_pred             EEEcCC--CCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hhccc
Confidence            578899  77  767665   4778899999999988999999999999999888777633 345678888888 56799


Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCC-CCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295           77 KYPAPGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEAN-IPVCQLSLQPEKDGTYHYNVGKALAPL  153 (264)
Q Consensus        77 ~y~~~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~d-iPVV~is~~~~~~~~~~~~lG~aL~~~  153 (264)
                      +|+++||++||++|.+.+.+.|++ +.  .+.++++|||+||||++|+|+.+ +||||||++...++++|++||++|+++
T Consensus        83 ~y~~~gd~~la~~i~~~~~~~g~~-~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~~~~~~~~~~lG~al~~~  161 (271)
T 3vsj_A           83 AYDIRADTALAEACVTSSPLHGVH-ARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNLYHSGEITEKLAALAVDC  161 (271)
T ss_dssp             EEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred             cccCcCCHHHHHHHHHHHHHCCCc-EEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999996 53  35789999999999999999977 999999999889999999999999996


Q ss_pred             ---ccCCeEEEEecCCcccccccccC---CCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHH
Q 042295          154 ---KDEGVLIIGSGSATHNLKALQFD---GDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLH  227 (264)
Q Consensus       154 ---~d~~v~iIaSG~lsH~l~~~~~~---~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~  227 (264)
                         +++||+|||||++|||+...++.   ..++.+|+++||+|++++|+++|.++|+++..+  ....+. ++|++.++.
T Consensus       162 ~~~~~~~vlii~SGdlsH~l~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~~D~~~L~~~~~~--~~~~a~-g~~G~~~~~  238 (271)
T 3vsj_A          162 AKDQNKRVAVVGVGGLSGSLFREEIDPREDRIANEEDDKWNRRVLKLIEAGDVSALREAMPV--YAKEAR-VDMGFKHLH  238 (271)
T ss_dssp             HHHTTCCEEEEEECCSCCCCCSSCCCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHHTT-CGGGGHHHH
T ss_pred             HHHcCCCEEEEEECccccCCcccCCCCCCCCCCCcchHHHHHHHHHHHHCCCHHHHHhcCHH--HHHHhc-cCCcHHHHH
Confidence               38999999999999999633321   113368999999999999999999999999643  222232 479999999


Q ss_pred             HHhcccCCC-CceeEecc
Q 042295          228 VAMGAAGED-AKAEQIHQ  244 (264)
Q Consensus       228 ~a~Ga~~~~-~~~~~~~~  244 (264)
                      +++||.+.. .+++++.+
T Consensus       239 ~l~gal~~~~~~~~ll~Y  256 (271)
T 3vsj_A          239 WILGALKGKFSGANVLGY  256 (271)
T ss_dssp             HHHHHTTTCCSEEEEEEE
T ss_pred             HHHHhcCCCCCCcceeee
Confidence            999998753 36666654

>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A

Probab=99.72  E-value=5.5e-18  Score=152.75  Aligned_cols=177  Identities=12%  Similarity=0.062  Sum_probs=125.8

Q ss_pred             cCCCCEEEEEcC-CCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccccc-CCCCCc
Q 042295           34 LQKPNSILVISA-HWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKED-TKRGLD  111 (264)
Q Consensus        34 ~~~Pd~IVviS~-Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~-~~~~lD  111 (264)
                      ..+||+|||++| |..... .+.+.....    | .-|  +    .+.+.|.+++++|.+..   .+  ...+ .....|
T Consensus        64 ~~~p~~VvilGP~H~~~~~-~~a~~~~~~----~-~TP--l----G~l~vD~el~~~L~~~~---~~--~~~d~~~~~~E  126 (293)
T 3bcz_A           64 PSITRRIFILGPSHHVPLS-RCALSSVDI----Y-RTP--L----YDLRIDQKIYGELWKTG---MF--ERMSLQTDEDE  126 (293)
T ss_dssp             TTTCCEEEEEEECSSSCCS-SEEECSCSE----E-CCS--S----CCEEBCHHHHHHHHHTS---CE--EECCHHHHHHC
T ss_pred             cCCCCEEEEECCCCCCCCC-ceEEccCCc----e-ECC--C----ccCCCCHHHHHHHHhcC---Cc--ccccccccchh
Confidence            358999999998 976543 244432111    1 112  1    12455999998887653   22  1112 123468


Q ss_pred             ceeEeeccccc---cC--CCCCeeeeeCCCCCChHHHHHHHHHhcccc-cCCeEEEEecCCcccccccccCCCC-----C
Q 042295          112 HGAWTPLMLMY---PE--ANIPVCQLSLQPEKDGTYHYNVGKALAPLK-DEGVLIIGSGSATHNLKALQFDGDS-----V  180 (264)
Q Consensus       112 HG~~vPL~~l~---p~--~diPVV~is~~~~~~~~~~~~lG~aL~~~~-d~~v~iIaSG~lsH~l~~~~~~~~~-----~  180 (264)
                      |++-|+|-|+.   +.  .++|||||.++ ..++++++++|++|+++. +.+++||+||++||+-...+..+..     .
T Consensus       127 HSlEv~LPfL~~~~~~~~~~~~IVPI~vg-~~~~~~~~~~g~~l~~~~~~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~  205 (293)
T 3bcz_A          127 HSIEMHLPYTAKAMESHKDEFTIIPVLVG-ALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEI  205 (293)
T ss_dssp             CTTGGGHHHHHHHTGGGTTSCEEEEEEEC-CCCHHHHHHHHHHHHHHHTCTTEEEEEECCCCEEBGGGTBCCCCGGGCSH
T ss_pred             eEEEeeHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHHHhCCCeEEEEeCCccCCCCCCCCCccccccchh
Confidence            99999988764   32  38999999999 689999999999999974 5599999999999993322211110     2


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccC
Q 042295          181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAG  234 (264)
Q Consensus       181 ~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~  234 (264)
                      .+++++||+.++++|+++|.++++++.+      ....+.|++.|+.++++++.
T Consensus       206 ~~~~~~~D~~~i~~i~~~d~~~~~~~~~------~~~~t~CG~~pi~~~l~a~~  253 (293)
T 3bcz_A          206 YRSIEHLDKMGMSIIEQLDPVSFSNYLK------KYHNTICGRHPIGVLLNAIT  253 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHCCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHH------HhCcCcCcHHHHHHHHHHHH
Confidence            3568999999999999999999999743      34557899999999988764

>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1

Probab=80.07  E-value=8.2  Score=34.14  Aligned_cols=115  Identities=18%  Similarity=0.228  Sum_probs=76.3

Q ss_pred             CCCCEEEEEcCCCC-CCCCeEEEec--CCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC---CCCcccccCCC
Q 042295           35 QKPNSILVISAHWE-TDVPTVNVVR--QNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS---GFNHVKEDTKR  108 (264)
Q Consensus        35 ~~Pd~IVviS~Hw~-~~~~~i~~~~--~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~---gid~~~~~~~~  108 (264)
                      .+||.||++|=|-- +..+.+|+..  ++ ..-+|+|-|.++      ++.+|.+...+.+.+++.   +++ +..... 
T Consensus        91 ~~~d~iIflSRH~s~~~~p~LTvH~tGN~-g~a~~GG~p~~l------a~a~P~~~~~lLr~l~~~~~~~fe-vt~EAT-  161 (298)
T 2gfq_A           91 FKPEIIAFASRHSSKQKLPALTTHVTGNW-GKAMYGGKDESF------AVAIPSAMKLSLLKMSELNDLGWT-VCYEAT-  161 (298)
T ss_dssp             CCCSEEEEEEEEECSSCCCEEEEECCEES-SCCSSSSCTTEE------CBBCHHHHHHHHHHHHHHCCSCCE-EEECCS-
T ss_pred             CCCcEEEEEeccccCCCCceEEEeCCCCC-CccccCCCCCcc------ccCCHHHHHHHHHHHHHhcCCCCE-EEEecc-
Confidence            45999999999954 5667777753  23 366788988865      566899988888777654   342 332111 


Q ss_pred             CCcceeEeeccccccC-CCCCeeeeeCCCC----CChHHHHHHHHHhccccc-------CCeEEEEecCCcccc
Q 042295          109 GLDHGAWTPLMLMYPE-ANIPVCQLSLQPE----KDGTYHYNVGKALAPLKD-------EGVLIIGSGSATHNL  170 (264)
Q Consensus       109 ~lDHG~~vPL~~l~p~-~diPVV~is~~~~----~~~~~~~~lG~aL~~~~d-------~~v~iIaSG~lsH~l  170 (264)
                        =||         |. .++|.+=|=|...    .+++.+-.+.+++-++.+       +...+||-||. |-.
T Consensus       162 --HHG---------Pt~l~~Ps~FVEIGSte~eW~d~~A~~~vA~av~~~l~~~~~~~~~~~~~iG~GGg-HYa  223 (298)
T 2gfq_A          162 --HHG---------PTELEVPSFFIEIGSSEEEWINDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGG-HYA  223 (298)
T ss_dssp             --CSS---------CCCCCSBEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECSC-TTC
T ss_pred             --ccC---------CCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccchhcccCCCEEEEeCCC-CcC
Confidence              133         34 5788877777644    267777777777666531       45688999987 643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d2pw6a1	258	c.56.6.1 (A:14-271) Uncharacterized protein YgiD {	1e-87
d1b4ub_	298	c.56.6.1 (B:) LigB subunit of an aromatic-ring-ope	4e-24

>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: Uncharacterized protein YgiD
species: Escherichia coli [TaxId: 562]

 Score =  259 bits (662), Expect = 1e-87
 Identities = 90/262 (34%), Positives = 143/262 (54%), Gaps = 10/262 (3%)

Query: 1   METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
           M   F+ HGSP   ++++L  R   +       L +P +I+V+SAHW T    V  +   
Sbjct: 2   MPALFLGHGSPMNVLEDNLYTR-SWQKLGMT--LPRPQAIVVVSAHWFTRGTGVTAMETP 58

Query: 61  DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
            TI+DF GFP+ LY   YPAPG+P LA+R+ ELL         +    G DHG+W  L+ 
Sbjct: 59  PTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTL--DKEAWGFDHGSWGVLIK 116

Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDS- 179
           MYP+A+IP+ QLS+   K   +H+ +G+ LA L+DEG++++ SG+  HNL+ +++ GDS 
Sbjct: 117 MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS 176

Query: 180 VVSWASEFDCWLKDALLQG---RYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED 236
              WA+ F+ ++K  L          + +Y      G +++P+PEH+ PL   +GA    
Sbjct: 177 PYPWATSFNEYVKANLTWQGPVEQHPLVNY-LDHEGGTLSNPTPEHYLPLLYVLGAWDGQ 235

Query: 237 AKAEQIHQSWQLCSLSCSSYKF 258
                  +  ++ SLS  S + 
Sbjct: 236 EPITIPVEGIEMGSLSMLSVQI 257

>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

 Score = 96.2 bits (239), Expect = 4e-24
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 24  FLKAWKEQVFLQKPNSILVISA-HWETDVPTVNVVRQNDTIYDFYGFPEQLYKL-KYPAP 81
            ++ W +Q     P+ ++++   H       +           F    E           
Sbjct: 38  PIRDWIKQ-PGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPADEGWGPRPVPDVK 96

Query: 82  GAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSL---- 134
           G PDLA  + + L    F  +    +  +DHG   PL +++ E       V    +    
Sbjct: 97  GHPDLAWHIAQSLILDEF-DMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVT 155

Query: 135 QPEKDGTYHYNVGKALAP-----LKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDC 189
            P   G   + +G ++        +D  V + G+G  +H L+  +    +      EFD 
Sbjct: 156 YPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAGLIN-----KEFDL 210

Query: 190 WLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIH 243
              D L+    E       +  Y + +           +  GA  E  +     
Sbjct: 211 NFIDKLISDPEELSKMPHIQ--YLRESGSEGVELVMWLIMRGALPEKVRDLYTF 262

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d2pw6a1	258	Uncharacterized protein YgiD {Escherichia coli [Ta	100.0
d1b4ub_	298	LigB subunit of an aromatic-ring-opening dioxygena	100.0

>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: Uncharacterized protein YgiD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-77  Score=526.21  Aligned_cols=253  Identities=34%  Similarity=0.634  Sum_probs=222.4

Q ss_pred             CcEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCC
Q 042295            1 METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPA   80 (264)
Q Consensus         1 ~p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~   80 (264)
                      ||++|||||||+++++ ++++.++|+++++++  .|||+||||||||++.++.|++.+.++++|||+|||+++|+++|++
T Consensus         2 ~P~lFisHG~P~~~l~-~~~~~~~l~~lg~~l--~kP~aIvviSaHw~~~~~~v~~~~~~~~~~Df~gFp~~ly~~~y~~   78 (258)
T d2pw6a1           2 MPALFLGHGSPMNVLE-DNLYTRSWQKLGMTL--PRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPA   78 (258)
T ss_dssp             CCEEEEECC-CCCCSS-CCHHHHHHHHHHHHS--CCCSEEEEEEEEEEESSEEEECCCC-------------CCSCCCCC
T ss_pred             CCeEEeCCCCcccCcC-CcHHHHHHHHHHHhc--CCCCEEEEECCCcCCCCceEEecCCCCccccccccchhhccccCcC
Confidence            7999999999999995 468899999999997  5899999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEE
Q 042295           81 PGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLI  160 (264)
Q Consensus        81 ~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~i  160 (264)
                      +|+++||++|++.+++.|+ ++. +.+++||||+||||++|||++|+||||||++...|++++|+||++|+++|+|||+|
T Consensus        79 ~g~~~La~~i~~~l~~~gi-~~~-~~~~glDHG~~vPL~~m~p~~~~pvv~iS~~~~~~~~~~~~lG~aL~~lr~e~vli  156 (258)
T d2pw6a1          79 PGSPALAQRLVELLAPIPV-TLD-KEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML  156 (258)
T ss_dssp             CBCHHHHHHHHHHHTTSCE-EEE-SSCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEEE
T ss_pred             CCCHHHHHHHHHHhccCCc-ccc-CCCccccccceeeeeEecCcccceEEEEecCCCCCHHHHHHHHHHHHHHHHCCEEE
Confidence            9999999999999999999 454 66799999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcccccccccC-CCCCcchHHHHHHHHHHHHHcC---CHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC
Q 042295          161 IGSGSATHNLKALQFD-GDSVVSWASEFDCWLKDALLQG---RYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED  236 (264)
Q Consensus       161 IaSG~lsH~l~~~~~~-~~~~~~~~~~FD~~~~~~l~~g---d~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~  236 (264)
                      ||||++||||+..++. +....+|+.+||+|+.+.|+++   |.++|++|. ++|+++.||||+|||+||++++||++++
T Consensus       157 IgSG~lsHnL~~~~~~~~~~~~~~a~~Fd~w~~~~l~~~~~~~~~~l~~~~-~~p~a~~ahPt~EH~~Pl~~alGa~~~~  235 (258)
T d2pw6a1         157 VASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYL-DHEGGTLSNPTPEHYLPLLYVLGAWDGQ  235 (258)
T ss_dssp             EEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGG-GSTTHHHHCSSSTTTHHHHHHHHTCCSS
T ss_pred             EEecccccccccccccCCCCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHH-hChhHhhcCCchhHHHHHHHHhhCCCCC
Confidence            9999999999887653 4556799999999999999987   677799994 5899999999999999999999999888


Q ss_pred             CceeEeccceeccceeeeEEEec
Q 042295          237 AKAEQIHQSWQLCSLSCSSYKFT  259 (264)
Q Consensus       237 ~~~~~~~~~~~~~~~s~~~~~~~  259 (264)
                      ++.+++|+++.+|||||+||+||
T Consensus       236 ~~~~~~~~~~~~gslsm~s~~fg  258 (258)
T d2pw6a1         236 EPITIPVEGIEMGSLSMLSVQIG  258 (258)
T ss_dssp             SCEECSCCCEETTTEECCCEEEC
T ss_pred             CCeEEEecCeeeceeeeEEEEeC
Confidence            88999999999999999999997

>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

Probab=100.00  E-value=2.7e-39  Score=290.07  Aligned_cols=223  Identities=20%  Similarity=0.255  Sum_probs=165.5

Q ss_pred             EEEEcCCCCCCC--C-----CCC--hHHHHHHHHHHHHhhc--CCCCEEEEEcC-CCCCCC----CeEEEecCCCccCCC
Q 042295            3 TFFISHGSPTLP--I-----DES--LQVRHFLKAWKEQVFL--QKPNSILVISA-HWETDV----PTVNVVRQNDTIYDF   66 (264)
Q Consensus         3 ~~fisHG~P~~~--~-----~~~--~~~~~~l~~l~~~l~~--~~Pd~IVviS~-Hw~~~~----~~i~~~~~~~~~~D~   66 (264)
                      .+..|| .|++.  +     ++.  +++.++++++++.+++  .|||+|||||+ ||.++.    +.++++.........
T Consensus         6 ~~~~SH-~P~i~~~~d~~~~~~~~~~~~~~a~~~l~~~l~e~~~kPDviVVvs~DH~~~f~~~~~p~f~ig~~~~~~~~~   84 (298)
T d1b4ub_           6 GITSSH-IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPAD   84 (298)
T ss_dssp             EEEECC-CHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEECBCB
T ss_pred             EEeCCC-cchhccccccCCCCcHHHHHHHHHHHHHHHHHHhhccCcCEEEEEeccHHHHhccccCCcccccccccccCCc
Confidence            467899 44431  1     111  4678999999999984  48999999988 998753    234443322111111


Q ss_pred             CCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCC----CC
Q 042295           67 YGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPE----KD  139 (264)
Q Consensus        67 ~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~----~~  139 (264)
                      .++   .-...|+++|+++||++|++.+.++||| +..+.++++|||+++||++|+|+.+   +|||||++|+.    .+
T Consensus        85 ~~~---~~~~~~~~~g~~eLA~~i~~~~~~~g~d-~~~~~~~~lDHg~~vPl~~l~~~~~~~~ipvVpi~~n~~~~p~~s  160 (298)
T d1b4ub_          85 EGW---GPRPVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPS  160 (298)
T ss_dssp             CSS---SBCSSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSSCCCC
T ss_pred             ccc---CccCCCCCCCCHHHHHHHHHHHHHCCCC-cccccCcCcccccceeHHHhcCccccCCCceEEEeeeccCCCCCC
Confidence            121   1123477899999999999999999997 7778899999999999999999865   89999999875    37


Q ss_pred             hHHHHHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcch
Q 042295          140 GTYHYNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGK  214 (264)
Q Consensus       140 ~~~~~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~  214 (264)
                      +++||+||++|+++     +|+||+|||||+|||||..++.+     ..+++||+++++++++ |..+++.+... ....
T Consensus       161 ~~r~~~lG~ai~~ai~~~~~d~rV~viaSGgLSH~l~~~~~~-----~~~~efD~~~l~~l~~-~~~~~~~~~~~-e~~~  233 (298)
T d1b4ub_         161 GKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAG-----LINKEFDLNFIDKLIS-DPEELSKMPHI-QYLR  233 (298)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTT-----BCCHHHHHHHHHHHHH-CHHHHTTCCHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCEEEEEeCcccccCCCCCCC-----CCCHHHHHHHHHHHhc-ChHhhhhCCcH-HHHH
Confidence            89999999999996     47899999999999999776532     4568999999999985 55666665321 1223


Q ss_pred             hcCCCCcchHHHHHHhcccCCCC
Q 042295          215 MAHPSPEHFYPLHVAMGAAGEDA  237 (264)
Q Consensus       215 ~ahp~~~h~~pl~~a~Ga~~~~~  237 (264)
                      .+....-++++|++++||+++..
T Consensus       234 ~aG~~g~Elr~wi~~~gAl~~~~  256 (298)
T d1b4ub_         234 ESGSEGVELVMWLIMRGALPEKV  256 (298)
T ss_dssp             HHCTTGGGGHHHHHHHHTSCSCE
T ss_pred             HhccCHHHHHHHHHHHHhcCCCc
Confidence            44432224899999999998643