Citrus Sinensis ID: 042312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF
Secondary Structure (PSIPRED)
ccccccccccEEEEccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHccccccEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccccccccccccccHHHHHHHHHccccccccccHHHHcEEccccEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
mtlglinanpvvhakkervprteeshshsddCWRSLTQIVNFVrdirdpehpysleqlsvlseesitvdEKLGRILITFTPTIQHCSMAAVIGLCLRVklkeffpphfkvrf
Flexible Loop (DISEMBL)
mtlglinanpvvhakkervprteeshshsddcwrSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKeffpphfkvrf
Low Complexity Region (SEG)
MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYsleqlsvlseesITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF
Disordered region (IsUnstruct)
******************************DCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHF****
Disordered Region (DISOPRED)
*TLGLINANPV********************CWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF
Disordered Region (DISEMBL)
MTLGLINANPVVH******************CWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF
Disordered Region (DISPRO)
****LINA**********************DCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q9C9G6	157	MIP18 family protein At1g	no	no	0.928	0.662	0.461	3e-23
Q9SR25	149	MIP18 family protein At3g	no	no	0.883	0.664	0.476	2e-18
O62252	160	MIP18 family protein F45G	yes	no	0.910	0.637	0.486	5e-18
Q9VTC4	156	MIP18 family protein CG79	yes	no	0.919	0.660	0.447	1e-17
Q54QK1	163	MIP18 family protein FAM9	yes	no	0.928	0.638	0.368	7e-15
Q9D187	163	Mitotic spindle-associate	yes	no	0.928	0.638	0.398	1e-14
Q9Y3D0	163	Mitotic spindle-associate	yes	no	0.928	0.638	0.388	1e-14
Q9H5X1	160	MIP18 family protein FAM9	no	no	0.669	0.468	0.448	8e-13
P38829	231	MIP18 family protein YHR1	yes	no	0.651	0.316	0.435	1e-12
Q9DCL2	160	MIP18 family protein FAM9	no	no	0.669	0.468	0.435	2e-12

>sp|Q9C9G6|U195A_ARATH MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 77/117 (65%), Gaps = 13/117 (11%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLT-------QIVNFVRDIRDPEHPY 53
           M  GLIN NP+++ KKER  RT+ S +        LT       +I + +RDI+DPEHP 
Sbjct: 1   MVSGLINENPIIYPKKERRLRTDTSITDE------LTPEPIDQLEIFDHIRDIKDPEHPN 54

Query: 54  SLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           +LE L V++E+S+ VD++   + +TFTPT++HCSMA VIGLC+RVKL    P  +K+
Sbjct: 55  TLEDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKI 111

May play a role in chromosome segregation through establishment of sister chromatid cohesion.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR25|U195B_ARATH MIP18 family protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 8/107 (7%)

Query: 5   LINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHP-YSLEQLSVLSE 63
           L N NP+++ K+ R  RT++S   S D + S     N +RDI+DPEHP  SLE L+VL+E
Sbjct: 5   LTNKNPIIYPKRTRRYRTDQS---STDEFSS----TNRIRDIKDPEHPELSLEDLNVLTE 57

Query: 64  ESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           ES+ VD+    + ITFTPT+ HC +   IGLC+ VKL +  P  FKV
Sbjct: 58  ESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKV 104

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Arabidopsis thaliana (taxid: 3702)

>sp|O62252|U195_CAEEL MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 67/113 (59%), Gaps = 11/113 (9%)

Query: 5   LINANPVVHAKKER---VPRTEESHSHSD--DCWRSLTQIVNFVRDIRDPEHPYSLEQLS 59
           L NANP +   K R   V  TE   S  D  D W    +I + +RDI DPEHPY+LEQL+
Sbjct: 6   LDNANPTLFDSKPRHRPVTGTERDESVEDPIDSW----EIFDLIRDINDPEHPYTLEQLN 61

Query: 60  VLSEESITV--DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           V+ EE I V  DE+   + + FTPTI HCSMA +IGL +RVKL     P  KV
Sbjct: 62  VVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKV 114

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VTC4|U195A_DROME MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 7   NANPVVHAK-KERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEES 65
           N NP V+ + KERV    E   +  D +    +I + +R+I DPEHP +LE+L V+ E+ 
Sbjct: 7   NINPNVYDRIKERVLTANEEDENVPDPFDK-REIFDLIRNINDPEHPLTLEELHVVQEDL 65

Query: 66  ITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           I +++    + I+FTPTI HCSMA +IGL +RVKL    PP FKV
Sbjct: 66  IRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKV 110

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Drosophila melanogaster (taxid: 7227)

>sp|Q54QK1|FA96B_DICDI MIP18 family protein FAM96B OS=Dictyostelium discoideum GN=fam96B PE=3 SV=2

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 10/114 (8%)

Query: 7   NANPVVHAKKERVPRTEESHSHSDDCWRSL----------TQIVNFVRDIRDPEHPYSLE 56
           N NPV++   E     E++ +  +    S+           +I + VR I DPEHP +LE
Sbjct: 4   NPNPVIYVDNENCKSFEDNENSFNSSRYSIEEDQIDEFDEQEIFDLVRSITDPEHPLTLE 63

Query: 57  QLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           QL+V+  E++ ++ +   IL+ FTPT+ HCSMA +IGL ++ KL    P  FKV
Sbjct: 64  QLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKV 117

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9D187|MIP18_MOUSE Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 5   LINANPVVHAKKERVPRT--EESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLS 62
           L NANP+++ +    P T  EE     D       +I + +R I DPEHP +LE+L+V+ 
Sbjct: 12  LENANPLIYERSGERPVTAGEEDEEVPDSI--DAREIFDLIRSINDPEHPLTLEELNVVE 69

Query: 63  EESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           +  I V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct: 70  QVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Mus musculus (taxid: 10090)

>sp|Q9Y3D0|MIP18_HUMAN Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo sapiens GN=FAM96B PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 5   LINANPVVHAKKERVPRT--EESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLS 62
           L NANP+++ +    P T  EE     D       +I + +R I DPEHP +LE+L+V+ 
Sbjct: 12  LENANPLIYQRSGERPVTAGEEDEQVPDSI--DAREIFDLIRSINDPEHPLTLEELNVVE 69

Query: 63  EESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           +  + V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct: 70  QVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Homo sapiens (taxid: 9606)

>sp|Q9H5X1|FA96A_HUMAN MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 38  QIVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
           ++ + +R IRDPE P +LE+L V+SE  + V   +E+   ++I FTPT+ HCS+A +IGL
Sbjct: 39  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 98

Query: 95  CLRVKLKEFFPPHFKVRF 112
           CLRVKL+   P   K+  
Sbjct: 99  CLRVKLQRCLPFKHKLEI 116

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Homo sapiens (taxid: 9606)

>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 5/78 (6%)

Query: 38  QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDE-----KLGRILITFTPTIQHCSMAAVI 92
           +I + +  I DPEHP SL QLSV++ E I V +     ++  ++I  TPTI HCS+A +I
Sbjct: 108 EIYDLIAHISDPEHPLSLGQLSVVNLEDIDVHDSGNQNEMAEVVIKITPTITHCSLATLI 167

Query: 93  GLCLRVKLKEFFPPHFKV 110
           GL +RV+L+   PP F++
Sbjct: 168 GLGIRVRLERSLPPRFRI 185

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9DCL2|FA96A_MOUSE MIP18 family protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 38  QIVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
           ++ + +R IRDPE P +LE+L V++E  + V   +E    ++I FTPT+ HCS+A +IGL
Sbjct: 39  EVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIKFTPTVPHCSLATLIGL 98

Query: 95  CLRVKLKEFFPPHFKVRF 112
           CLRVKL+   P   K+  
Sbjct: 99  CLRVKLQRCLPFKHKLEI 116

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
225430768	154	PREDICTED: MIP18 family protein At1g6831	0.955	0.694	0.845	8e-45
449462848	154	PREDICTED: MIP18 family protein At1g6831	0.955	0.694	0.827	3e-44
351722861	154	uncharacterized protein LOC100305681 [Gl	0.955	0.694	0.8	2e-43
224133840	154	predicted protein [Populus trichocarpa]	0.955	0.694	0.818	5e-43
351725477	154	uncharacterized protein LOC100500284 [Gl	0.955	0.694	0.781	1e-42
217074364	154	unknown [Medicago truncatula] gi|3885063	0.955	0.694	0.763	2e-42
388494310	151	unknown [Lotus japonicus]	0.928	0.688	0.781	1e-41
255561168	161	Protein FAM96B, putative [Ricinus commun	0.964	0.670	0.75	2e-39
116785692	155	unknown [Picea sitchensis] gi|224285927|	0.946	0.683	0.741	6e-38
297819790	154	predicted protein [Arabidopsis lyrata su	0.955	0.694	0.727	7e-37

>gi|225430768|ref|XP_002267591.1| PREDICTED: MIP18 family protein At1g68310-like [Vitis vinifera]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 97/110 (88%), Gaps = 3/110 (2%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGLINANPVVHAKKERV RTE+ H   DD    L +I +FVRDIRDPEHPYSLEQLSV
Sbjct: 1   MTLGLINANPVVHAKKERVARTEDLHG--DDAVDPL-EIYDFVRDIRDPEHPYSLEQLSV 57

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSEESITVDEKLGRILITFTPTIQHCSMA VIGLCLRVKLK +FPPHFKV
Sbjct: 58  LSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKHYFPPHFKV 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462848|ref|XP_004149152.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus] gi|449517634|ref|XP_004165850.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus]

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 97/110 (88%), Gaps = 3/110 (2%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGLINANPVVHAKKER+ R+E+ H   DD    L +I +FVRDIRDPEHPYSLEQLSV
Sbjct: 1   MTLGLINANPVVHAKKERIARSEDFHG--DDAVDPL-EIYDFVRDIRDPEHPYSLEQLSV 57

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSEESITVDEKLGRILITFTPTIQHCSMA VIGLCLRVKLK FFPPH+KV
Sbjct: 58  LSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKHFFPPHYKV 107

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722861|ref|NP_001235211.1| uncharacterized protein LOC100305681 [Glycine max] gi|255626291|gb|ACU13490.1| unknown [Glycine max]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 97/110 (88%), Gaps = 3/110 (2%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGLINANPVVHAKKER+ R+++ H+  DD    L  I +FVRDIRDPEHPYSLEQLSV
Sbjct: 1   MTLGLINANPVVHAKKERIARSDDPHA--DDAVDPL-DIYDFVRDIRDPEHPYSLEQLSV 57

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSEESITVD+KLGRILITFTPT+QHCSMA VIGLCLRVKLK +FPPHFKV
Sbjct: 58  LSEESITVDDKLGRILITFTPTVQHCSMATVIGLCLRVKLKHYFPPHFKV 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133840|ref|XP_002327693.1| predicted protein [Populus trichocarpa] gi|222836778|gb|EEE75171.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 96/110 (87%), Gaps = 3/110 (2%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGL+NANPVVHAKKERV RTE+ H   DD    L  I +FVRDIRDPEHPYSLEQLSV
Sbjct: 1   MTLGLVNANPVVHAKKERVARTEDLHC--DDSVDPL-DIYDFVRDIRDPEHPYSLEQLSV 57

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSEESITVD+KLGRILITFTPTIQHCSMA VIGLCLRVKL+E FPPH+KV
Sbjct: 58  LSEESITVDDKLGRILITFTPTIQHCSMATVIGLCLRVKLQECFPPHYKV 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725477|ref|NP_001235814.1| uncharacterized protein LOC100500284 [Glycine max] gi|255629934|gb|ACU15319.1| unknown [Glycine max]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 97/110 (88%), Gaps = 3/110 (2%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGLINANPVVHAKKER+ R+++ H+  DD    L  I +FVRDIRDPEHPYSLEQLSV
Sbjct: 1   MTLGLINANPVVHAKKERITRSDDPHA--DDAVDPL-DIYDFVRDIRDPEHPYSLEQLSV 57

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSEESI+VD+KLGRILITFTPT+QHCSMA VIGLCLRVKLK +FPPH+KV
Sbjct: 58  LSEESISVDDKLGRILITFTPTVQHCSMATVIGLCLRVKLKHYFPPHYKV 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074364|gb|ACJ85542.1| unknown [Medicago truncatula] gi|388506314|gb|AFK41223.1| unknown [Medicago truncatula]

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 96/110 (87%), Gaps = 3/110 (2%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGLINANP+VHAKKER+PR+EESHS   D +     I +FVRDIRDPEHPYSLEQL+V
Sbjct: 1   MTLGLINANPIVHAKKERIPRSEESHS---DHFVDPLDIYDFVRDIRDPEHPYSLEQLNV 57

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSEESI+VD+KLGRILITFTPT++HCSM  VIGLCLRVKLK +FP H+KV
Sbjct: 58  LSEESISVDDKLGRILITFTPTVRHCSMVTVIGLCLRVKLKHYFPAHYKV 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494310|gb|AFK35221.1| unknown [Lotus japonicus]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 94/110 (85%), Gaps = 6/110 (5%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGLINANPVVHAKKER+PR     S +DD    L  I +FVRDIRDPEHPYSLEQLSV
Sbjct: 1   MTLGLINANPVVHAKKERIPR-----SAADDAVDPL-DIYDFVRDIRDPEHPYSLEQLSV 54

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSE+SITVD+KL RILITFTPT+QHCSMA VIGLCLRVKLK +FPPH+KV
Sbjct: 55  LSEKSITVDDKLARILITFTPTVQHCSMATVIGLCLRVKLKHYFPPHYKV 104

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561168|ref|XP_002521596.1| Protein FAM96B, putative [Ricinus communis] gi|223539274|gb|EEF40867.1| Protein FAM96B, putative [Ricinus communis]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 93/116 (80%), Gaps = 8/116 (6%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSL------TQIVNFVRDIRDPEHPYS 54
           MTLGLINANPVVHAKKERV RTE+ H   DD    L         +  + DIRDPEHPYS
Sbjct: 1   MTLGLINANPVVHAKKERVARTEDLHC--DDAVDPLEIYDILLFSLFSLLDIRDPEHPYS 58

Query: 55  LEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LEQLSVLSEESITVD+KLGRILITFTPTIQHCSMA VIGLCLRVKL+E FPPH+KV
Sbjct: 59  LEQLSVLSEESITVDDKLGRILITFTPTIQHCSMATVIGLCLRVKLQECFPPHYKV 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116785692|gb|ABK23822.1| unknown [Picea sitchensis] gi|224285927|gb|ACN40677.1| unknown [Picea sitchensis]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 92/112 (82%), Gaps = 6/112 (5%)

Query: 1   MTLGLINANPVVHAKKER--VPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQL 58
           MT GLINANPVVHAKKER  + R E+++S+  D       I + VRDIRDPEHPYSLEQL
Sbjct: 1   MTPGLINANPVVHAKKERERLVRPEDTNSNDFDAL----DIYDSVRDIRDPEHPYSLEQL 56

Query: 59  SVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           SVLSEES+TVDEKLGRILITFTPT+QHCSMAAVIGLCLRVKL   FP H+KV
Sbjct: 57  SVLSEESVTVDEKLGRILITFTPTVQHCSMAAVIGLCLRVKLMRNFPAHYKV 108

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819790|ref|XP_002877778.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323616|gb|EFH54037.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 89/110 (80%), Gaps = 3/110 (2%)

Query: 1   MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSV 60
           MTLGLINANPVV AKKER+ R E+ +   DD    L +I  +VRDIRDPEHPY+LEQLSV
Sbjct: 1   MTLGLINANPVVQAKKERLVRREDQYR--DDGVDPL-EIYEYVRDIRDPEHPYTLEQLSV 57

Query: 61  LSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
           LSEES+TVDEKL RILI FTPTIQHCSMA +IGLCLR KLKE  P H+KV
Sbjct: 58  LSEESVTVDEKLDRILIMFTPTIQHCSMANIIGLCLRAKLKECLPLHYKV 107

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:4010713823	154	AT3G50845 "AT3G50845" [Arabido	0.955	0.694	0.609	2.4e-28
TAIR|locus:2199362	159	AE7 "AS1/2 ENHANCER7" [Arabido	0.964	0.679	0.4	5.3e-17
FB|FBgn0036107	156	CG7949 [Drosophila melanogaste	0.919	0.660	0.4	1.1e-14
UNIPROTKB|O62252	160	F45G2.10 "MIP18 family protein	0.910	0.637	0.424	3.8e-14
ZFIN|ZDB-GENE-040718-148	159	fam96b "family with sequence s	0.928	0.654	0.351	2.7e-13
MGI|MGI:1915773	163	Fam96b "family with sequence s	0.937	0.644	0.363	3.4e-13
RGD|1585802	165	Fam96b "family with sequence s	0.937	0.636	0.363	3.4e-13
UNIPROTKB|Q9Y3D0	163	FAM96B "Mitotic spindle-associ	0.937	0.644	0.354	4.4e-13
UNIPROTKB|E1BC22	163	FAM96B "Uncharacterized protei	0.937	0.644	0.354	1.2e-12
UNIPROTKB|E1BWV0	161	FAM96B "Uncharacterized protei	0.928	0.645	0.342	1.5e-12

TAIR|locus:4010713823 AT3G50845 "AT3G50845" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 67/110 (60%), Positives = 77/110 (70%)

Query:     1 MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYXXXXXXX 60
             MTLGLINANPVV AKKE + R E+ +   DD    L +I ++VRDIRDPEHPY       
Sbjct:     1 MTLGLINANPVVQAKKEGLVRREDQYR--DDGVDPL-EIYDYVRDIRDPEHPYTLEQLRV 57

Query:    61 XXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                  +TVD+KL RILITFTPTIQHCSMA +IGLCLR KLKE    H+KV
Sbjct:    58 VSEESVTVDDKLDRILITFTPTIQHCSMANIIGLCLRAKLKECLQLHYKV 107

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199362 AE7 "AS1/2 ENHANCER7" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 46/115 (40%), Positives = 66/115 (57%)

Query:     1 MTLGLINANPVVHAKKERVPRTEESHSHSDDCW-RSLTQIVNF----VRDIRDPEHPYXX 55
             M  GLIN NP+++ KKER  RT+ S +  D+     + Q+  F      +I+DPEHP   
Sbjct:     1 MVSGLINENPIIYPKKERRLRTDTSIT--DELTPEPIDQLEIFDILSSSNIKDPEHPNTL 58

Query:    56 XXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                       + VD++   + +TFTPT++HCSMA VIGLC+RVKL    P  +K+
Sbjct:    59 EDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKI 113

GO:0005634 "nucleus" evidence=ISM

GO:0010209 "vacuolar sorting signal binding" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

FB|FBgn0036107 CG7949 [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 42/105 (40%), Positives = 57/105 (54%)

Query:     7 NANPVVHAK-KERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYXXXXXXXXXXXX 65
             N NP V+ + KERV    E   +  D +    +I + +R+I DPEHP             
Sbjct:     7 NINPNVYDRIKERVLTANEEDENVPDPFDK-REIFDLIRNINDPEHPLTLEELHVVQEDL 65

Query:    66 ITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
             I +++    + I+FTPTI HCSMA +IGL +RVKL    PP FKV
Sbjct:    66 IRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKV 110

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O62252 F45G2.10 "MIP18 family protein F45G2.10" [Caenorhabditis elegans (taxid:6239)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 48/113 (42%), Positives = 57/113 (50%)

Query:     5 LINANPVVHAKKER---VPRTEESHSHSD--DCWRSLTQIVNFVRDIRDPEHPYXXXXXX 59
             L NANP +   K R   V  TE   S  D  D W    +I + +RDI DPEHPY      
Sbjct:     6 LDNANPTLFDSKPRHRPVTGTERDESVEDPIDSW----EIFDLIRDINDPEHPYTLEQLN 61

Query:    60 XXXXXXITV--DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                   I V  DE+   + + FTPTI HCSMA +IGL +RVKL     P  KV
Sbjct:    62 VVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKV 114

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040718-148 fam96b "family with sequence similarity 96, member B" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 38/108 (35%), Positives = 58/108 (53%)

Query:     5 LINANPVVHAKK-ERV-PRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYXXXXXXXXX 62
             L NANP++  +  ER+   T+E    +D     + +I + +R I DPEHP          
Sbjct:     7 LENANPLIFQRSGERLLTSTDEDEDVADPI--DVREIFDLIRSINDPEHPLSLEELNVVE 64

Query:    63 XXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                + V+++   + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct:    65 QVRVNVNDEESTVSVEFTPTIPHCSMATLIGLSIKVKLLRSLPDRFKI 112

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915773 Fam96b "family with sequence similarity 96, member B" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 40/110 (36%), Positives = 55/110 (50%)

Query:     4 GLI-NANPVVHAKKERVPRT--EESHSHSDDCWRSLTQIVNFVRDIRDPEHPYXXXXXXX 60
             GL+ NANP+++ +    P T  EE     D       +I + +R I DPEHP        
Sbjct:    10 GLLENANPLIYERSGERPVTAGEEDEEVPDSI--DAREIFDLIRSINDPEHPLTLEELNV 67

Query:    61 XXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                  I V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct:    68 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0071817 "MMXD complex" evidence=ISO

GO:0097361 "CIA complex" evidence=ISO

RGD|1585802 Fam96b "family with sequence similarity 96, member B" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 40/110 (36%), Positives = 55/110 (50%)

Query:     4 GLI-NANPVVHAKKERVPRT--EESHSHSDDCWRSLTQIVNFVRDIRDPEHPYXXXXXXX 60
             GL+ NANP+++ +    P T  EE     D       +I + +R I DPEHP        
Sbjct:    12 GLLENANPLIYERSGERPVTAGEEDEEVPDSI--DAREIFDLIRSINDPEHPLTLEELNV 69

Query:    61 XXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                  I V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct:    70 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0071817 "MMXD complex" evidence=IEA;ISO

GO:0097361 "CIA complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q9Y3D0 FAM96B "Mitotic spindle-associated MMXD complex subunit MIP18" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 39/110 (35%), Positives = 55/110 (50%)

Query:     4 GLI-NANPVVHAKKERVPRT--EESHSHSDDCWRSLTQIVNFVRDIRDPEHPYXXXXXXX 60
             GL+ NANP+++ +    P T  EE     D       +I + +R I DPEHP        
Sbjct:    10 GLLENANPLIYQRSGERPVTAGEEDEQVPDSI--DAREIFDLIRSINDPEHPLTLEELNV 67

Query:    61 XXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                  + V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct:    68 VEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0071817 "MMXD complex" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0097361 "CIA complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E1BC22 FAM96B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/110 (35%), Positives = 56/110 (50%)

Query:     4 GLI-NANPVVHAKK-ER-VPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYXXXXXXX 60
             GL+ NANP+++ +  +R V   EE     D       +I + +R I DPEHP        
Sbjct:    10 GLLENANPLIYERSGDRPVSAGEEDEQVPDSI--DAREIFDLIRSINDPEHPLTLEELNV 67

Query:    61 XXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                  + V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct:    68 VEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

GO:0097361 "CIA complex" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BWV0 FAM96B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/108 (34%), Positives = 56/108 (51%)

Query:     5 LINANPVVHAKKERVPRTEESHSHSDDCWRSLT--QIVNFVRDIRDPEHPYXXXXXXXXX 62
             L NANP+++ +    P T  +    D+   S+   +I + +R I DPEHP          
Sbjct:    10 LENANPLIYRRSGERPVT--AREEDDELPDSIDDREIFDLIRSINDPEHPLTLEELNVVE 67

Query:    63 XXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                + V++    + + FTPTI HCSMA +IGL ++VKL    P  FK+
Sbjct:    68 QVRVKVNDAESTVAVEFTPTIPHCSMATLIGLSIKVKLIRSLPERFKM 115

GO:0007059 "chromosome segregation" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0097361 "CIA complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
COG5133	181	COG5133, COG5133, Uncharacterized conserved protei	1e-23
COG2151	111	COG2151, PaaD, Predicted metal-sulfur cluster bios	0.003

>gnl|CDD|227462 COG5133, COG5133, Uncharacterized conserved protein [Function unknown]

 Score = 88.9 bits (220), Expect = 1e-23
 Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 7/104 (6%)

Query: 14  AKKERVPRTEESHSHSDDCWRSLTQ--IVNFVRDIRDPEHPYSLEQLSVLSEESITVDE- 70
           + +ER P   E+    ++    + Q  I + + DIRDPEHP +LEQLSV+S E I+V + 
Sbjct: 32  SLEERHPIESENGVLQNEEPDLIDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDG 91

Query: 71  ----KLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
                +  + +  TPTI HCSMA +IGLC+RV+L+   PP F V
Sbjct: 92  IAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHV 135

Length = 181

>gnl|CDD|225062 COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 34  RSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIG 93
            +L  I+  ++ + DPE    +  L  L  E + +D+  G + +  T T   C +A VI 
Sbjct: 12  VTLEDILEALKTVIDPEIGIDIVDLG-LVYE-VDIDDVDGLVKVKMTLTSPGCPLAEVIA 69

Query: 94  LCLRVKLKEFFP 105
             +   L+E   
Sbjct: 70  DQVEAALEEIPG 81

Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG3381	161	consensus Uncharacterized conserved protein [Funct	100.0
COG5133	181	Uncharacterized conserved protein [Function unknow	99.94
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	99.84
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	99.59
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	99.58
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	99.35
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	99.08
PRK11670	369	antiporter inner membrane protein; Provisional	98.5
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	92.22
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	83.75
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	82.51
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	80.63
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	80.56

>KOG3381 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9e-34  Score=210.65  Aligned_cols=109  Identities=50%  Similarity=0.789  Sum_probs=97.5

Q ss_pred             CCcccCCceEEeccCCC--CCcccCCCCCccchhhHHHHHHHHccCCCCCCCCCccccCceeecceeEec---CC--ceE
Q 042312            3 LGLINANPVVHAKKERV--PRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDE---KL--GRI   75 (112)
Q Consensus         3 ~~~~N~nP~v~~~~~~~--~~~~~~~~~~~~~i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~---~~--~~V   75 (112)
                      ++++|.||.||.+..++  ....++++...++++++ ++|+++|+|+|||||+||+||++|+.+.|+|.+   +.  ..|
T Consensus         2 s~l~N~np~v~~~~~~~~r~~~s~~d~~~~~~~~~~-~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V   80 (161)
T KOG3381|consen    2 SGLQNENPLVYPTRSRERRVTASEEDELLPDSEDAE-EIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYV   80 (161)
T ss_pred             CccccCCccccccccccccccccccccccCcchhHH-HHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEE
Confidence            56999999999976654  33556778888889999 999999999999999999999999999999864   22  479


Q ss_pred             EEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceeeC
Q 042312           76 LITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF  112 (112)
Q Consensus        76 ~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~i  112 (112)
                      +|.||||+|||||+++||++||.||.|+||++|||+|
T Consensus        81 ~i~ftPTipHCSmaTlIGLcIrVkl~RsLp~rfkvdV  117 (161)
T KOG3381|consen   81 RITFTPTIPHCSMATLIGLCIRVKLLRSLPPRFKVDV  117 (161)
T ss_pred             EEEeccCCCcchHHhhhhheeeeeeeecCCCceeEEE
Confidence            9999999999999999999999999999999999986

>COG5133 Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=6.5e-28  Score=179.74  Aligned_cols=110  Identities=41%  Similarity=0.720  Sum_probs=91.8

Q ss_pred             CCCcccCCceEEeccCCCCC------------------cccCC----CCCccchhhHHHHHHHHccCCCCCCCCCccccC
Q 042312            2 TLGLINANPVVHAKKERVPR------------------TEESH----SHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLS   59 (112)
Q Consensus         2 ~~~~~N~nP~v~~~~~~~~~------------------~~~~~----~~~~~~i~~~~eI~~~Lr~V~DPEiP~tivdLG   59 (112)
                      ++++.|.||-|.+-.....+                  .+-++    +++.|+||++ +||++|+.|+|||||+++.+||
T Consensus         1 ~a~~~nenpdi~e~NqlP~r~e~~~dlll~ss~e~~~piese~~~~~~ee~d~id~q-eiydLia~I~DPEHPltL~QLs   79 (181)
T COG5133           1 MAEFLNENPDIKEMNQLPFRAESEEDLLLGSSLEERHPIESENGVLQNEEPDLIDQQ-EIYDLIADIRDPEHPLTLEQLS   79 (181)
T ss_pred             CccccccCcchhhhhcCCccccchhhhhcccchhhcCcccccccccccCCCCCcCHH-HHHHHHHhcCCCCCCccHhhcc
Confidence            46889999999765442111                  11111    4566899999 9999999999999999999999


Q ss_pred             ceeecceeEecCC-----ceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceeeC
Q 042312           60 VLSEESITVDEKL-----GRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF  112 (112)
Q Consensus        60 lV~~~~I~v~~~~-----~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~i  112 (112)
                      +|..++|.|.|+.     ..|.|.||||+|||||+++||++||.+|.|++|++|.|+|
T Consensus        80 VV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~lpprF~v~v  137 (181)
T COG5133          80 VVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQV  137 (181)
T ss_pred             eeeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeeehhcCCCceeEEE
Confidence            9999999987643     2599999999999999999999999999999999998864

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=99.84  E-value=6.9e-21  Score=135.35  Aligned_cols=71  Identities=24%  Similarity=0.367  Sum_probs=62.3

Q ss_pred             hhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCc
Q 042312           33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPH  107 (112)
Q Consensus        33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~  107 (112)
                      ...+ +|+++|++|+|||+|++|++||+||+  |.+++.++.+.|.||||+||||++..|..+++.++.+. ++.
T Consensus        12 ~~~~-~i~~aL~~V~DPEi~idIvdLGLVy~--v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~-~~v   82 (111)
T COG2151          12 VTLE-DILEALKTVIDPEIGIDIVDLGLVYE--VDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEI-PGV   82 (111)
T ss_pred             hhHH-HHHHHhhcCCCcccceeeEeeccEEE--EEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhc-CCc
Confidence            4456 89999999999999999999999998  66654345899999999999999999999999999994 543

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=99.59  E-value=5.3e-15  Score=95.35  Aligned_cols=70  Identities=19%  Similarity=0.394  Sum_probs=60.1

Q ss_pred             HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceeeC
Q 042312           38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF  112 (112)
Q Consensus        38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~i  112 (112)
                      +|+++|++|.||+.+.+|++||+|++  |.+.  ++.|.|.|++++|+||+...|..+++.+|. ++|+.-+|.|
T Consensus         3 ~V~~aL~~v~dP~~~~~iv~~g~V~~--i~i~--~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~-~l~gv~~V~V   72 (72)
T PF01883_consen    3 AVRDALKQVKDPELGKDIVELGMVRD--ISIE--GGKVSVSLELPTPACPAAEPLREEIREALK-ALPGVKSVKV   72 (72)
T ss_dssp             HHHHHHTT-BETTTSSBTTTTTSEEE--EEEC--TCEEEEEE--SSTTHTTHHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred             HHHHHHhCCCCCCCCCCHHHcCCeeE--EEEE--CCEEEEEEEECCCCchHHHHHHHHHHHHHH-hCCCCceEeC
Confidence            89999999999999999999999998  6774  478999999999999999999999999999 6898766654

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=99.58  E-value=1.2e-14  Score=109.87  Aligned_cols=76  Identities=24%  Similarity=0.241  Sum_probs=64.3

Q ss_pred             cchhhHHHHHHHHccCCCCCCCCCccccCceeecceeEec---CCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCc
Q 042312           31 DCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDE---KLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPH  107 (112)
Q Consensus        31 ~~i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~---~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~  107 (112)
                      ++..++ +||++|++|+|||+|.+|++||+||+  |.+.+   ++..|.|.||+|+|+|+|...|..+++.+|.. +++.
T Consensus        71 ~~~~ee-~V~eaL~tV~DPei~~nIVeLGlV~~--I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~-l~gV  146 (174)
T TIGR03406        71 GEDNED-QVWEQLRTVYDPEIPVNIVDLGLVYG--CRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLA-VPNV  146 (174)
T ss_pred             ccccHH-HHHHHHcCCCCCCCCCChHHcCCeEE--EEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCc
Confidence            445566 89999999999999999999999998  56654   22379999999999999999999999999976 5664


Q ss_pred             cee
Q 042312          108 FKV  110 (112)
Q Consensus       108 ~kv  110 (112)
                      -++
T Consensus       147 ~~V  149 (174)
T TIGR03406       147 DEV  149 (174)
T ss_pred             eeE
Confidence            444

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=99.35  E-value=2.7e-12  Score=94.75  Aligned_cols=62  Identities=31%  Similarity=0.525  Sum_probs=52.2

Q ss_pred             CCCCCCC-CCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312           46 IRDPEHP-YSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR  111 (112)
Q Consensus        46 V~DPEiP-~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~  111 (112)
                      |.|||+| .||++||+|++  |.+.+  +.|.|++|||++|||+...|..+|+.+|.+..-..++|+
T Consensus         1 v~DPEi~~~sIvdLG~Vr~--V~v~g--d~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~Gv~~V~V~   63 (146)
T TIGR02159         1 VPDPEIPVVSVTDLGMVRE--VDVDG--GGVVVKFTPTYSGCPALEVIRQDIRDAVRALGVEVVEVS   63 (146)
T ss_pred             CcCCCCCCCCchhcCCeeE--EEEEC--CEEEEEEEeCCCCCchHHHHHHHHHHHHHhcCCCeEEEe
Confidence            6899999 89999999997  66643  479999999999999999999999999988533334443

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=99.08  E-value=1.3e-09  Score=74.00  Aligned_cols=69  Identities=23%  Similarity=0.407  Sum_probs=59.6

Q ss_pred             HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCccee
Q 042312           38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv  110 (112)
                      +|.++|+++.||+++.+|+++|.|++  |.+.+ ++.|.|.+++++|+||+...+...++.+|.. +++.-++
T Consensus         5 ~I~~~L~~v~dP~l~~~lv~~g~V~~--i~v~~-~~~v~i~l~l~~p~~~~~~~l~~~i~~al~~-l~gv~~v   73 (99)
T TIGR02945         5 AVIEALKTVYDPEIPVNIYELGLIYD--IDVDD-DGHVDIQMTLTAPNCPVAGSMPGEVENAVRA-VPGVGSV   73 (99)
T ss_pred             HHHHHHcCCCCCCCCCCeecCCCeeE--EEECC-CCeEEEEEEECCCCCChHHHHHHHHHHHHHh-CCCCceE
Confidence            89999999999999999999999987  66642 2579999999999999999999999999977 5554333

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=98.50  E-value=7.5e-07  Score=73.53  Aligned_cols=72  Identities=10%  Similarity=0.040  Sum_probs=62.2

Q ss_pred             hhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCccee
Q 042312           33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv  110 (112)
                      ...+ +|.++|+.|.||+.+-+|++||+|.+  |.+.  ++.|.+.++.|+++||+...+..+++.+|.+ +++.-++
T Consensus        12 ~~~~-~v~~~l~~v~~p~~~~~~~~~~~v~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   83 (369)
T PRK11670         12 ALRA-MVAGTLANFQHPTLKHNLTTLKALHH--VALL--DDTLHIELVMPFVWNSAFEELKEQCSAELLR-ITGAKAI   83 (369)
T ss_pred             chHH-HHHHHHhcCCCCCCCCChhhhCCeeE--EEEe--CCEEEEEEEECCCCchHHHHHHHHHHHHHHh-cCCCceE
Confidence            4456 99999999999999999999999987  6664  3579999999999999999999999999987 6664333

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=92.22  E-value=0.78  Score=29.54  Aligned_cols=38  Identities=18%  Similarity=0.353  Sum_probs=31.8

Q ss_pred             ceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312           73 GRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        73 ~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv  110 (112)
                      +.|+|.|+=.-.|||+++. +...|+.+|++.+|...+|
T Consensus        27 ~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V   65 (68)
T PF01106_consen   27 GVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRV   65 (68)
T ss_dssp             TEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEE
T ss_pred             CEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceE
Confidence            3899999999999999965 4489999999999987665

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=83.75  E-value=4.6  Score=30.90  Aligned_cols=67  Identities=19%  Similarity=0.237  Sum_probs=43.7

Q ss_pred             HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312           38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv  110 (112)
                      +|-++|..-.-   |.=--+=|=|.-  +.+.+ ++.|.|.|+=.-.|||++.. +...|+.+|++.+|..-+|
T Consensus       109 ~i~~~l~~~ir---P~l~~dGGdiel--v~v~~-~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V  176 (190)
T TIGR03341       109 RINYVLQSEIN---PQLASHGGKVTL--VEITD-DGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGV  176 (190)
T ss_pred             HHHHHHHhccC---HHHHhcCCceEE--EEEcC-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceE
Confidence            45555542222   333344454444  23432 35789999999999999965 5568999999988876555

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=82.51  E-value=5.4  Score=27.61  Aligned_cols=56  Identities=18%  Similarity=0.204  Sum_probs=38.7

Q ss_pred             CCccccCceeecceeEecCCceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312           53 YSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        53 ~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv  110 (112)
                      .=..|=|=|.-  +.++..++.|.+.|-=.-.|||+++. +...|++.|+..+|+..+|
T Consensus        25 ~l~~dGGdve~--~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V   81 (93)
T COG0694          25 QLAMDGGDVEL--VGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEV   81 (93)
T ss_pred             ceeccCCeEEE--EEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceE
Confidence            33444444443  33444356799999999999999976 4555999998888876555

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=80.63  E-value=12  Score=28.75  Aligned_cols=64  Identities=19%  Similarity=0.246  Sum_probs=40.9

Q ss_pred             HHHHccCCCCCC-CCCccccCceeecceeEecCCceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCC
Q 042312           40 VNFVRDIRDPEH-PYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPP  106 (112)
Q Consensus        40 ~~~Lr~V~DPEi-P~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~  106 (112)
                      ++.++.+.|=++ |.=--+=|=|.-  +.+. +++.|.|.|+=.-.|||+++. +...|+..|++.+|+
T Consensus       108 ~~~i~~~l~~~irP~l~~dGGdiel--v~v~-~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~  173 (192)
T PRK11190        108 MERVEYVLQSQINPQLAGHGGRVSL--MEIT-EDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPG  173 (192)
T ss_pred             HHHHHHHHHhccChhHHhcCCcEEE--EEEc-CCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCH
Confidence            334444444333 333344444443  2343 235789999999999999965 555999999998883

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=80.56  E-value=6.1  Score=32.11  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=33.6

Q ss_pred             ceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312           73 GRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR  111 (112)
Q Consensus        73 ~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~  111 (112)
                      +.|.|.|+=.-.|||++..=...|+.+|++.+|...+|.
T Consensus       250 ~~v~v~l~GaC~gC~~s~~Tl~~Ie~~l~~~~p~~~~V~  288 (290)
T TIGR02000       250 KIVYVVLTGACSGCSMSTMTLKGIQQRLRERLGEFVVVE  288 (290)
T ss_pred             CEEEEEEeeCCCCCcchHHHHHHHHHHHHHhCCCceEEE
Confidence            579999999999999997766669999999999877664

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3ux2_A	130	Crystal Structure Of Domain-Swapped Fam96a Major Di		2e-09
3ux3_A	130	Crystal Structure Of Domain-Swapped Fam96a Minor Di		2e-09

>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer Length = 130

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 38  QIVNFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
           ++ + +R IRDPE P             + V   +E+   ++I FTPT+ HCS+A +IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 95  CLRVKLKEFFP 105
           CLRVKL+   P
Sbjct: 72  CLRVKLQRCLP 82

>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer Length = 130

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 38  QIVNFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
           ++ + +R IRDPE P             + V   +E+   ++I FTPT+ HCS+A +IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 95  CLRVKLKEFFP 105
           CLRVKL+   P
Sbjct: 72  CLRVKLQRCLP 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	1e-26

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A Length = 130

 Score = 95.0 bits (236), Expect = 1e-26
 Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 3/75 (4%)

Query: 39  IVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGLC 95
           + + +R IRDPE P +LE+L V+SE  + V   +E+   ++I FTPT+ HCS+A +IGLC
Sbjct: 13  VYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLC 72

Query: 96  LRVKLKEFFPPHFKV 110
           LRVKL+   P   K+
Sbjct: 73  LRVKLQRCLPFKHKL 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	99.96
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	99.77
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	99.73
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	99.71
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	91.86
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	86.79

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=99.96  E-value=1.4e-29  Score=183.07  Aligned_cols=79  Identities=46%  Similarity=0.844  Sum_probs=72.1

Q ss_pred             hhhHHHHHHHHccCCCCCCCCCccccCceeecceeE---ecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcce
Q 042312           33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFK  109 (112)
Q Consensus        33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v---~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~k  109 (112)
                      .+++ +||++||+|+|||||+||+|||+||+++|.+   .++++.|.|+||||+|||||+++|+++||.||.+++|++||
T Consensus         8 ~~~~-eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~k   86 (130)
T 3ux2_A            8 EKAL-EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHK   86 (130)
T ss_dssp             HHHH-HHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCC
T ss_pred             ccHH-HHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceE
Confidence            3567 9999999999999999999999999988875   33456799999999999999999999999999999999999


Q ss_pred             eeC
Q 042312          110 VRF  112 (112)
Q Consensus       110 v~i  112 (112)
                      |+|
T Consensus        87 V~v   89 (130)
T 3ux2_A           87 LEI   89 (130)
T ss_dssp             CCC
T ss_pred             EEE
Confidence            985

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=99.77  E-value=4.3e-19  Score=122.54  Aligned_cols=76  Identities=22%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             chhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312           32 CWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR  111 (112)
Q Consensus        32 ~i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~  111 (112)
                      .++++ +|+++|++|.|||+|.+|++||+||+  |.+.+ ++.|.|.||+|+||||+...|..+++.+|.+.+|+..+|+
T Consensus         7 ~~~~~-~V~~aL~~V~DPe~~~~Iv~lG~V~~--I~v~~-~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~   82 (108)
T 3lno_A            7 EAFEN-KLYANLEAVIDPELGVDIVNLGLVYD--VTADE-NNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIE   82 (108)
T ss_dssp             HHHHH-HHHHHGGGCEETTTTEEHHHHTCEEE--EEECT-TCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred             hhhHH-HHHHHHcCCCCCCCCCCHHHcCCceE--EEECC-CCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEE
Confidence            35667 99999999999999999999999997  66743 3579999999999999999999999999955588876654

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=99.73  E-value=9.8e-18  Score=114.23  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             hhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312           33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR  111 (112)
Q Consensus        33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~  111 (112)
                      ++++ +|+++|++|.|||+|.+|++||+||+  |.+++ ++.|.|.||+|+||||+...|..+++.+|.+ +++.-+++
T Consensus         6 ~~~~-~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~-~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~-l~gv~~v~   79 (103)
T 1uwd_A            6 VTKE-DVLNALKNVIDFELGLDVVSLGLVYD--IQIDD-QNNVKVLMTMTTPMCPLAGMILSDAEEAIKK-IEGVNNVE   79 (103)
T ss_dssp             CCHH-HHHHHHTTCBCTTTSSBTTTTTCCCC--EEECT-TCEEEEEECCSSSCCSSHHHHHHHHHHHHHT-SSSCCEEE
T ss_pred             chHH-HHHHHHcCCCCCCCCcChhhcCCeeE--EEEcC-CCEEEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCcceEE
Confidence            3456 89999999999999999999999997  67743 3589999999999999999999999999975 67655544

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=99.71  E-value=2e-17  Score=112.78  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312           34 RSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR  111 (112)
Q Consensus        34 ~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~  111 (112)
                      .++ +|+++|++|.|||+|.+|++||+||+  |.+++  +.|.|.||+|+||||+...|..+++.+|.+ +++.-+++
T Consensus         7 ~~~-~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~--~~V~v~l~lt~~~cp~~~~l~~~i~~al~~-l~gv~~V~   78 (103)
T 3cq1_A            7 LEA-QAWALLEAVYDPELGLDVVNLGLIYD--LVVEP--PRAYVRMTLTTPGCPLHDSLGEAVRQALSR-LPGVEEVE   78 (103)
T ss_dssp             HHH-HHHHHHTTCBCTTTCSBTTTTTCEEE--EEEET--TEEEEEECCSSSSCCSSCHHHHHHHHHHHT-STTCCEEE
T ss_pred             HHH-HHHHHHhCCCCCCCCcCchhcCceEE--EEEEC--CEEEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCceeEE
Confidence            456 89999999999999999999999997  66653  489999999999999999999999999975 67765554

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=91.86  E-value=0.46  Score=31.47  Aligned_cols=39  Identities=15%  Similarity=0.266  Sum_probs=32.8

Q ss_pred             CceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312           72 LGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        72 ~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv  110 (112)
                      ++.|.|.|+=.-.|||+++. +...|+.+|++.+|.--.|
T Consensus        37 ~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V   76 (88)
T 1xhj_A           37 DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEV   76 (88)
T ss_dssp             SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEE
T ss_pred             CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEE
Confidence            46899999999999999976 6779999999988775544

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=86.79  E-value=0.61  Score=31.07  Aligned_cols=38  Identities=13%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             ceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312           73 GRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        73 ~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv  110 (112)
                      +.|.|.|+=.-.|||+++. +...|+.+|++.+|..-+|
T Consensus        45 g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V   83 (92)
T 1veh_A           45 GIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGV   83 (92)
T ss_dssp             TEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCE
T ss_pred             CEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEE
Confidence            5799999999999999976 6679999999998876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	99.79
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	99.76
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	90.89
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	88.4

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=6.7e-20  Score=125.11  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=65.6

Q ss_pred             chhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312           32 CWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR  111 (112)
Q Consensus        32 ~i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~  111 (112)
                      .++++ +|+++||+|.|||+|.+|++||+||+  |.|++ .+.|.|.||+|+||||++..|..+++.+|.+ +++.-+++
T Consensus         4 ~vt~~-~V~~aL~~V~DPe~~~dIV~LGlV~~--i~I~~-~g~V~v~~~lt~~~Cp~~~~i~~~i~~al~~-~~gV~~v~   78 (102)
T d1uwda_           4 KVTKE-DVLNALKNVIDFELGLDVVSLGLVYD--IQIDD-QNNVKVLMTMTTPMCPLAGMILSDAEEAIKK-IEGVNNVE   78 (102)
T ss_dssp             CCCHH-HHHHHHTTCBCTTTSSBTTTTTCCCC--EEECT-TCEEEEEECCSSSCCSSHHHHHHHHHHHHHT-SSSCCEEE
T ss_pred             ccCHH-HHHHHHhCCCCCCCCcceeeccceee--EEecc-ccceEEEEecCCCCCchHHHHHHHHHHHHHc-CCCCceEE
Confidence            36677 99999999999999999999999997  67743 3579999999999999999999999999987 67655544

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=2.9e-19  Score=119.15  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=63.4

Q ss_pred             hHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312           35 SLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR  111 (112)
Q Consensus        35 ~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~  111 (112)
                      ++ +||++|++|.|||++.+|++||+||+  |.+.  ++.|.|.|++|+++||+...|..+++.+|.+ +++.-+|+
T Consensus         3 e~-~v~eaL~~V~DPe~~~dIv~LGlV~~--i~i~--~~~v~v~l~lt~~~cp~~~~i~~~i~~al~~-l~gv~~V~   73 (91)
T d2cu6a1           3 EA-QAWALLEAVYDPELGLDVVNLGLIYD--LVVE--PPRAYVRMTLTTPGCPLHDSLGEAVRQALSR-LPGVEEVE   73 (91)
T ss_dssp             HH-HHHHHHTTCEETTTTEETTTTTCEEE--EEEE--TTEEEEEECCSSSSCCSSCHHHHHHHHHHHT-STTCCEEE
T ss_pred             HH-HHHHHHhcCCCCCCCcChhhccceeE--EEEe--ccccEEEEEcCCCCCcHHHHHHHHHHHHHHc-CCCCceEE
Confidence            45 89999999999999999999999997  6675  4689999999999999999999999999976 77765554

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=90.89  E-value=0.31  Score=30.65  Aligned_cols=39  Identities=15%  Similarity=0.266  Sum_probs=33.1

Q ss_pred             CceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312           72 LGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        72 ~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv  110 (112)
                      ++.|.|.|+=.-.|||++.. +...|+..|++.+|....|
T Consensus        37 ~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V   76 (88)
T d1xhja_          37 DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEV   76 (88)
T ss_dssp             SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEE
T ss_pred             CCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceE
Confidence            46799999999999999965 5588999999999986655

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.40  E-value=0.074  Score=34.00  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHH-HHHHHHHHHHHHhCCCccee
Q 042312           38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAA-VIGLCLRVKLKEFFPPHFKV  110 (112)
Q Consensus        38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~-~I~~~i~~~L~~~lp~~~kv  110 (112)
                      .|-++|..-..|-+.   -+=|-|.-  +.++  ++.|.|.|+=.-.|||+++ .+...|+..|++.+|..-.|
T Consensus        17 ~I~~vL~~~IrP~l~---~dGGdv~l--v~v~--~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V   83 (92)
T d1veha_          17 MIKELLDTRIRPTVQ---EDGGDVIY--RGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGV   83 (92)
T ss_dssp             HHHHHHHHTTHHHHH---HHSCCCCE--EEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCE
T ss_pred             HHHHHHHHhcChHHH---HcCCceEE--EEee--CCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceE
Confidence            344455443344443   44555544  3343  3689999999999999994 46789999999988875443