Citrus Sinensis ID: 042325

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
MAWRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATYYDNKNEDKVSHQSSYIPQ
ccccccEEEEccccEEEEcccccHHHHHHHHcccccEEEEEEEEEccccccEEEEEEEEccHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEEcccccHHccccccccccc
ccccccEEEEcccEEEEEcccccHHHHHHHHcccccEEEEEEEEcccccHHEEEEEEEEccHHHHHHHHHHHHcccccccccccEEEEEEEEEEcccccccccccHHHHHHHcccccEEEEEEEEEEcccccHHHHHHHHHcccc
mawrapfiftgkgefvtctsqKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSdfssfstdqetlisttgpshkvmpdylegqllmsqspldfypqsqHQKITSLINQYGIVYLIEVATyydnknedkvshqssyipq
mawrapfiftgkgefvTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDfssfstdqetlisttgpshKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATYYDNKnedkvshqssyipq
MAWRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATYYDNKNEDKVSHQSSYIPQ
**WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLI**********PDYLEGQLLMS**PLDFYPQSQHQKITSLINQYGIVYLIEVATYYD****************
**WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPL************SLINQYGIVYLIEVATYYDNKNEDKVSHQSSYI**
MAWRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATYYDNKN*************
*AWRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATYYDNKNEDKVSHQSSYIP*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAWRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQFITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATYYDNKNEDKVSHQSSYIPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query145 2.2.26 [Sep-21-2011]
Q9FUJ3 501 Cytokinin dehydrogenase 2 yes no 0.924 0.267 0.493 9e-34
Q9FUJ2 524 Cytokinin dehydrogenase 4 no no 0.820 0.227 0.555 7e-32
Q9LTS3 523 Cytokinin dehydrogenase 3 no no 0.875 0.242 0.446 6e-28
Q6YW50 524 Cytokinin dehydrogenase 7 yes no 0.827 0.229 0.424 5e-23
Q5Z620 550 Cytokinin dehydrogenase 1 yes no 0.896 0.236 0.429 1e-22
O22213 575 Cytokinin dehydrogenase 1 no no 0.903 0.227 0.421 1e-22
Q6YW51 527 Cytokinin dehydrogenase 6 yes no 0.896 0.246 0.394 2e-22
Q67YU0 540 Cytokinin dehydrogenase 5 no no 0.889 0.238 0.388 4e-22
Q8LNV6 527 Cytokinin dehydrogenase 3 yes no 0.862 0.237 0.416 2e-21
Q9LY71 533 Cytokinin dehydrogenase 6 no no 0.882 0.240 0.417 6e-21
>sp|Q9FUJ3|CKX2_ARATH Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2 Back     alignment and function desciption
 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 14/148 (9%)

Query: 8   IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
           + TGKGE +TC+ Q + ELFY VLGGLGQF  ITRARIVL  A +R KW R+LYSDF++F
Sbjct: 184 VITGKGEMLTCSRQLNPELFYGVLGGLGQFGIITRARIVLDHAPKRAKWFRMLYSDFTTF 243

Query: 66  STDQETLISTTGPSHKVMPDYLEGQLLMSQSPLD--FYPQSQHQKITSLINQYGIVYLIE 123
           + DQE LIS    ++ +  DYLEGQ+ +S   +D  F+P S   K+  L+ Q+GI+Y++E
Sbjct: 244 TKDQERLISM---ANDIGVDYLEGQIFLSNGVVDTSFFPPSDQSKVADLVKQHGIIYVLE 300

Query: 124 VATYYDNKNE-------DKVSHQSSYIP 144
           VA YYD+ N        D ++   SY+P
Sbjct: 301 VAKYYDDPNLPIISKVIDTLTKTLSYLP 328
Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: 2
>sp|Q9FUJ2|CKX4_ARATH Cytokinin dehydrogenase 4 OS=Arabidopsis thaliana GN=CKX4 PE=1 SV=2 Back     alignment and function description
>sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1 Back     alignment and function description
>sp|Q6YW50|CKX7_ORYSJ Cytokinin dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CKX7 PE=3 SV=1 Back     alignment and function description
>sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10 OS=Oryza sativa subsp. japonica GN=CKX10 PE=3 SV=1 Back     alignment and function description
>sp|O22213|CKX1_ARATH Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1 Back     alignment and function description
>sp|Q6YW51|CKX6_ORYSJ Cytokinin dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CKX6 PE=3 SV=1 Back     alignment and function description
>sp|Q67YU0|CKX5_ARATH Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1 Back     alignment and function description
>sp|Q8LNV6|CKX3_ORYSJ Cytokinin dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CKX3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY71|CKX6_ARATH Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana GN=CKX6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
356545727 508 PREDICTED: cytokinin dehydrogenase 3-lik 0.931 0.265 0.561 7e-39
356558359 543 PREDICTED: cytokinin dehydrogenase 3-lik 0.944 0.252 0.536 2e-38
356564788 560 PREDICTED: cytokinin dehydrogenase 3-lik 0.889 0.230 0.593 2e-38
356532712 515 PREDICTED: cytokinin dehydrogenase 3-lik 0.937 0.264 0.542 6e-38
356532728 546 PREDICTED: cytokinin dehydrogenase 3-lik 0.944 0.250 0.523 3e-37
379056394 535 cytokinin dehydrogenase 3-like [Glycine 0.951 0.257 0.551 3e-37
356547877 535 PREDICTED: cytokinin dehydrogenase 3-lik 0.910 0.246 0.561 1e-36
224088035 529 cytokinin oxidase [Populus trichocarpa] 0.848 0.232 0.592 2e-35
357449805 530 Cytokinin dehydrogenase [Medicago trunca 0.889 0.243 0.548 3e-35
357449815 540 Cytokinin dehydrogenase [Medicago trunca 0.903 0.242 0.525 1e-34
>gi|356545727|ref|XP_003541287.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 103/139 (74%), Gaps = 4/139 (2%)

Query: 8   IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
           + TGKG+ VTC+++ ++ELFYAVLGGLGQF  ITRARI LGPA  RVKWLR+LY++FS+F
Sbjct: 189 VVTGKGDLVTCSAENNSELFYAVLGGLGQFGIITRARIALGPAPTRVKWLRLLYNNFSAF 248

Query: 66  STDQETLISTTGPSHKVMPDYLEGQLLMSQSP--LDFYPQSQHQKITSLINQYGIVYLIE 123
           S DQE LIS  G +     DY+EG LL++Q P  L FYP+  H +ITSL+ QYGI+Y+IE
Sbjct: 249 SGDQEYLISVNGRNETNAADYVEGFLLLNQPPQDLSFYPEPDHPRITSLVTQYGIIYVIE 308

Query: 124 VATYYDNKNEDKVSHQSSY 142
           +  YYDN  ++ V    ++
Sbjct: 309 LVKYYDNSTQEHVDEDVNF 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356558359|ref|XP_003547474.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356564788|ref|XP_003550630.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356532712|ref|XP_003534915.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356532728|ref|XP_003534923.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|379056394|ref|NP_001243813.1| cytokinin dehydrogenase 3-like [Glycine max] gi|376315492|gb|AFB18642.1| cytokinin dehydrogenase 3 [Glycine max] Back     alignment and taxonomy information
>gi|356547877|ref|XP_003542331.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224088035|ref|XP_002308300.1| cytokinin oxidase [Populus trichocarpa] gi|222854276|gb|EEE91823.1| cytokinin oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357449805|ref|XP_003595179.1| Cytokinin dehydrogenase [Medicago truncatula] gi|355484227|gb|AES65430.1| Cytokinin dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357449815|ref|XP_003595184.1| Cytokinin dehydrogenase [Medicago truncatula] gi|124359255|gb|ABN05760.1| FAD linked oxidase, N-terminal [Medicago truncatula] gi|355484232|gb|AES65435.1| Cytokinin dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
TAIR|locus:2050349 501 CKX2 "cytokinin oxidase 2" [Ar 0.841 0.243 0.534 1.3e-31
TAIR|locus:2134423 524 CKX4 "cytokinin oxidase 4" [Ar 0.820 0.227 0.555 8.2e-30
TAIR|locus:2164615 523 CKX3 "cytokinin oxidase 3" [Ar 0.875 0.242 0.446 2.5e-26
TAIR|locus:2062714 575 CKX1 "cytokinin oxidase/dehydr 0.868 0.219 0.436 2.9e-21
TAIR|locus:2018437 540 CKX5 "cytokinin oxidase 5" [Ar 0.848 0.227 0.410 6.8e-21
UNIPROTKB|Q5ZAY9 534 CKX5 "Cytokinin dehydrogenase 0.834 0.226 0.415 8.4e-21
TAIR|locus:2087423 533 CKX6 "cytokinin oxidase/dehydr 0.882 0.240 0.417 2.9e-20
UNIPROTKB|Q8LNV6 527 CKX3 "Cytokinin dehydrogenase 0.827 0.227 0.451 4.7e-20
UNIPROTKB|Q5JLP4 529 CKX4 "Cytokinin dehydrogenase 0.827 0.226 0.419 1.3e-19
TAIR|locus:1005716173 524 CKX7 "cytokinin oxidase 7" [Ar 0.855 0.236 0.360 3.1e-17
TAIR|locus:2050349 CKX2 "cytokinin oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 69/129 (53%), Positives = 92/129 (71%)

Query:     8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
             + TGKGE +TC+ Q + ELFY VLGGLGQF  ITRARIVL  A +R KW R+LYSDF++F
Sbjct:   184 VITGKGEMLTCSRQLNPELFYGVLGGLGQFGIITRARIVLDHAPKRAKWFRMLYSDFTTF 243

Query:    66 STDQETLISTTGPSHKVMPDYLEGQLLMSQSPLD--FYPQSQHQKITSLINQYGIVYLIE 123
             + DQE LIS    ++ +  DYLEGQ+ +S   +D  F+P S   K+  L+ Q+GI+Y++E
Sbjct:   244 TKDQERLISM---ANDIGVDYLEGQIFLSNGVVDTSFFPPSDQSKVADLVKQHGIIYVLE 300

Query:   124 VATYYDNKN 132
             VA YYD+ N
Sbjct:   301 VAKYYDDPN 309
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009690 "cytokinin metabolic process" evidence=IEA
GO:0009823 "cytokinin catabolic process" evidence=ISS;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0019139 "cytokinin dehydrogenase activity" evidence=IEA;ISS;IMP
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008131 "primary amine oxidase activity" evidence=IDA
GO:0005788 "endoplasmic reticulum lumen" evidence=IDA
TAIR|locus:2134423 CKX4 "cytokinin oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164615 CKX3 "cytokinin oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062714 CKX1 "cytokinin oxidase/dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018437 CKX5 "cytokinin oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZAY9 CKX5 "Cytokinin dehydrogenase 5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2087423 CKX6 "cytokinin oxidase/dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LNV6 CKX3 "Cytokinin dehydrogenase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JLP4 CKX4 "Cytokinin dehydrogenase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:1005716173 CKX7 "cytokinin oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.5.99.12LOW CONFIDENCE prediction!
3rd Layer1.5.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
PLN02441 525 PLN02441, PLN02441, cytokinin dehydrogenase 3e-51
pfam09265 280 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1 5e-20
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase Back     alignment and domain information 
 Score =  170 bits (432), Expect = 3e-51
 Identities = 67/150 (44%), Positives = 95/150 (63%), Gaps = 18/150 (12%)

Query: 10  TGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFST 67
           TGKGE VTC+  ++++LF+AVLGGLGQF  ITRARI L PA +RV+W+R+LYSDFS+F+ 
Sbjct: 201 TGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTR 260

Query: 68  DQETLISTTGPSHKVMPDYLEGQLLM-SQSPLD-----FYPQSQHQKITSLINQYGIVYL 121
           DQE LIS   P +    DY+EG +++     ++     F+  S   + +SL +  G++Y 
Sbjct: 261 DQERLISRP-PENSF--DYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYC 317

Query: 122 IEVATYYDNKNEDKVSH-------QSSYIP 144
           +EVA YYD    D V         + S+IP
Sbjct: 318 LEVAKYYDEDTSDTVDQEVESLLKRLSFIP 347

Length = 525
>gnl|CDD|204184 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1, FAD and cytokinin binding Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 145
PLN02441 525 cytokinin dehydrogenase 100.0
KOG1231 505 consensus Proteins containing the FAD binding doma 99.95
PF09265 281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 99.9
TIGR01679 419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.51
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 99.43
TIGR01678 438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.35
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 99.34
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.22
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 99.18
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 98.94
PRK11230 499 glycolate oxidase subunit GlcD; Provisional 98.87
PLN02805 555 D-lactate dehydrogenase [cytochrome] 98.76
TIGR00387 413 glcD glycolate oxidase, subunit GlcD. This protein 98.61
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 98.4
COG0277 459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 98.27
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 97.39
KOG1233 613 consensus Alkyl-dihydroxyacetonephosphate synthase 93.7
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 93.14
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 90.58
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 90.21
KOG1232 511 consensus Proteins containing the FAD binding doma 86.48
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.4e-34  Score=255.79  Aligned_cols=139  Identities=47%  Similarity=0.842  Sum_probs=126.3

Q ss_pred             eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCC
Q 042325            3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSH   80 (145)
Q Consensus         3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~   80 (145)
                      -+++|||||+|++++||+++|+|||||++||+|+|  ||++||+++|+|+.++|+++.|.++++++++++++++..... 
T Consensus       194 Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~~~~~-  272 (525)
T PLN02441        194 VLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISRPPEN-  272 (525)
T ss_pred             EEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhcCCCC-
Confidence            36899999999999999999999999999999999  999999999999999999999999999999999999833222 


Q ss_pred             CCCCCeeEEEEeec-CCCCC-----CCCCcccccceecccCccEEEEEEEEeeeCCCChh-------hhccCCCCCC
Q 042325           81 KVMPDYLEGQLLMS-QSPLD-----FYPQSQHQKITSLINQYGIVYLIEVATYYDNKNED-------KVSHQSSYIP  144 (145)
Q Consensus        81 ~~~~dyveG~v~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~Y~le~~~~y~~~~~~-------~~l~~L~~~~  144 (145)
                        .+||+||+++++ ++.++     ||+|+|+.++++++++++|+||||++||||+++++       .+|++|+|+|
T Consensus       273 --~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~  347 (525)
T PLN02441        273 --SFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIP  347 (525)
T ss_pred             --CcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCC
Confidence              699999999999 46555     89999999999999999999999999999987652       4599999987

>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
3s1e_A 516 Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROG 5e-21
3s1d_A 516 Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROG 5e-21
2qpm_A 516 Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROG 5e-21
3s1f_A 516 Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROG 5e-21
2qkn_A 516 Crystal Structure Of Maize Cytokinin OxidaseDEHYDRO 5e-21
1w1o_A 534 Native Cytokinin Dehydrogenase Length = 534 7e-21
2exr_A 524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 7e-19
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 15/137 (10%)
Query: 8   IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
           + TG GE VTC+ Q + +LF AVLGGLGQF  ITRARI + PA  R +W+R++Y+DF++F
Sbjct: 185 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAF 244
Query: 66  STDQETLISTT----GPSHKVMPDYLEGQLLMSQS------PLDFYPQSQHQKITSLINQ 115
           S DQE L +      G S   M  Y+EG + ++QS         F+  +   +I +L  +
Sbjct: 245 SADQERLTAPRPGGGGASFGPM-SYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGE 303
Query: 116 YG--IVYLIEVATYYDN 130
                VY IE    YDN
Sbjct: 304 RNATTVYSIEATLNYDN 320
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine Length = 516 Back     alignment and structure
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Benzylurea Inhibitor Cpbu Length = 516 Back     alignment and structure
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu Length = 516 Back     alignment and structure
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase Length = 534 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-23
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-20
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
 Score = 92.0 bits (228), Expect = 7e-23
 Identities = 55/136 (40%), Positives = 77/136 (56%), Gaps = 13/136 (9%)

Query: 8   IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
           + TG GE VTC+ Q + +LF AVLGGLGQF  ITRARI + PA  R +W+R +Y+DF++F
Sbjct: 203 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAF 262

Query: 66  STDQETLIST---TGPSHKVMPDYLEGQLLMSQSPLD------FYPQSQHQKITSLINQ- 115
           S DQE L +     G +      Y+EG + ++QS         F+  +   +I +L  + 
Sbjct: 263 SADQERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGER 322

Query: 116 -YGIVYLIEVATYYDN 130
               VY IE    YDN
Sbjct: 323 NATTVYSIEATLNYDN 338
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.71
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.67
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 99.25
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 99.24
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.18
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 99.12
3tsh_A 500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 99.04
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 98.99
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 98.98
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 98.93
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 98.92
4bby_A 658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 98.8
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 98.78
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 98.71
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 98.7
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 98.7
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 98.62
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 98.61
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 98.57
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 98.54
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 98.44
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 98.22
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 98.19
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 97.34
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 96.99
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 96.76
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 96.72
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 96.69
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
Probab=99.71  E-value=6.2e-16  Score=135.84  Aligned_cols=130  Identities=35%  Similarity=0.681  Sum_probs=105.3

Q ss_pred             eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCC
Q 042325            3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSH   80 (145)
Q Consensus         3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~   80 (145)
                      -++++||++||++++|++.+|+||||+++||.|+|  ||++|++|.|.|+..+|..+.|.+++++.+.+..+++.+.. .
T Consensus       191 V~~l~vV~~dG~v~~~~~~~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~-~  269 (524)
T 2exr_A          191 VTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNE-S  269 (524)
T ss_dssp             EEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHHHHHHHHHHHTSCTT-S
T ss_pred             EEEEEEEecCCeEEEECCCCChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHHHHHHHHHHHHHcCCc-c
Confidence            36899999999999999999999999999999999  99999999999998888889999999999999998876532 1


Q ss_pred             CCCCCeeEEEEeecC-CCCC-----CCCCcccccceeccc-CccEEEEEEEEeee-CCCChhh
Q 042325           81 KVMPDYLEGQLLMSQ-SPLD-----FYPQSQHQKITSLIN-QYGIVYLIEVATYY-DNKNEDK  135 (145)
Q Consensus        81 ~~~~dyveG~v~~~~-~~~~-----~~~~~~~~~~~~~~~-~~~~~Y~le~~~~y-~~~~~~~  135 (145)
                        .++|+|++.+... ++.+     ++++.+...+..+.. .+.+++++|+++|| +..++++
T Consensus       270 --~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~llve~~~~~~~g~~~~~  330 (524)
T 2exr_A          270 --SFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNST  330 (524)
T ss_dssp             --SCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHH
T ss_pred             --hhHhhchhhhhcchhhhhhhhhcccccccccchhcCCcccccEEEEEEEEeecCCCCCHHH
Confidence              5799999988865 5544     344333333344432 46799999999999 6645543
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 145
d1w1oa1 289 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {M 1e-18
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 6e-06
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 289 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 77.6 bits (191), Expect = 1e-18
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 51  RVKWLRILYSDFSSFSTDQETLIS---TTGPSHKVMPDYLEGQLLMSQSPLD------FY 101
           R +W+R +Y+DF++FS DQE L +     G +      Y+EG + ++QS         F+
Sbjct: 3   RARWVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFF 62

Query: 102 PQSQHQKITSLINQ--YGIVYLIEVATYYDNKNED 134
             +   +I +L  +     VY IE    YDN    
Sbjct: 63  TDADVARIVALAGERNATTVYSIEATLNYDNATAA 97
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
d1w1oa1 289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.84
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 98.69
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 98.09
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 97.81
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 95.49
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 90.49
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.84  E-value=3.4e-22  Score=163.74  Aligned_cols=97  Identities=32%  Similarity=0.554  Sum_probs=76.3

Q ss_pred             CCeEEEEEEEecChhhHHHHHHHHHhccCCC---CCCCCCeeEEEEeecCC-CCC-----CCCCcccccceeccc--Ccc
Q 042325           49 KERVKWLRILYSDFSSFSTDQETLISTTGPS---HKVMPDYLEGQLLMSQS-PLD-----FYPQSQHQKITSLIN--QYG  117 (145)
Q Consensus        49 ~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~---~~~~~dyveG~v~~~~~-~~~-----~~~~~~~~~~~~~~~--~~~  117 (145)
                      |+++||+++.|+|+++|++|||+||+.+.++   ..+.||||||+|++|++ +.|     ||+++|+.++.++..  .|+
T Consensus         1 P~rvrw~rl~YsDf~~Ft~DQe~LIs~~~~~~~~~~~~fDYVEG~v~~~~~~~~~~~~s~~f~~~~~~~~~~~~~~~~g~   80 (289)
T d1w1oa1           1 PARARWVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNAT   80 (289)
T ss_dssp             CSEEEEEEEEESCHHHHHHHHHHHHCBC------CBCSCSEEEEEEEEGGGHHHHHHTTSSSCHHHHHHHHHHHHHTTCS
T ss_pred             CCceEEEEEEEccHHHHHHHHHHHhccCccccccccCCcceEEEEEEecCCCccCCcccccCCccccchhhhhccccCCc
Confidence            5789999999999999999999999875311   12369999999999973 444     799999999999865  478


Q ss_pred             EEEEEEEEeeeCCCCh--h-------hhccCCCCCCC
Q 042325          118 IVYLIEVATYYDNKNE--D-------KVSHQSSYIPQ  145 (145)
Q Consensus       118 ~~Y~le~~~~y~~~~~--~-------~~l~~L~~~~~  145 (145)
                      |+||||+|||||+.++  +       ++|++|+|+|.
T Consensus        81 ~lY~LE~ak~yd~~~~~~~~~d~~~~~lL~~L~~~~~  117 (289)
T d1w1oa1          81 TVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEG  117 (289)
T ss_dssp             EEEEEEEEEEC-------CHHHHHHHHHHTTCCCCTT
T ss_pred             eEEEEEEEEEecCCCCccchhhHHHHHHHhhcCCCCC
Confidence            9999999999987542  2       45999999973
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure