Citrus Sinensis ID: 042328

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRAYCRTT
ccccHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHccHHHHHHHHHccHHHHHHHHHHHcccccccccccc
ccccHHHHHHHccHHHHcccccEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHcccccccccc
aarssilkdcldgkllpisstdgmttmEVAEEGEVLKALVDFLytgslpreklQKHVVGLFAAGDNYEIEYLREVCLhhmpasfqssnaiDFLRIGYNYQLDELRDASLNFIVKNVEELVfsdkyeesasafPHLCVLITrgcfmganrraycrtt
aarssilkdcldgkllpisstdgmTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRAYCRTT
AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRAYCRTT
********DCLDGKLLPIS***GMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRAYC***
AARSSILKDCLDG************TMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMG**********
AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRAYCRTT
******LKDC*DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGAN********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRAYCRTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query156 2.2.26 [Sep-21-2011]
Q9LYL9282 BTB/POZ domain-containing yes no 0.916 0.507 0.386 2e-21
Q9LQ95207 BTB/POZ domain-containing no no 0.942 0.710 0.350 1e-15
Q9SJ29215 Putative BTB/POZ domain-c no no 0.865 0.627 0.328 1e-11
O22891165 Putative BTB/POZ domain-c no no 0.602 0.569 0.357 4e-09
Q7T330374 Speckle-type POZ protein no no 0.75 0.312 0.28 2e-07
O81432192 Putative BTB/POZ domain-c no no 0.910 0.739 0.301 3e-07
Q5NVK7374 Speckle-type POZ protein yes no 0.75 0.312 0.272 1e-06
Q6ZWS8374 Speckle-type POZ protein yes no 0.75 0.312 0.272 1e-06
O43791374 Speckle-type POZ protein yes no 0.75 0.312 0.272 1e-06
Q0VCW1374 Speckle-type POZ protein yes no 0.75 0.312 0.272 1e-06
>sp|Q9LYL9|Y3623_ARATH BTB/POZ domain-containing protein At3g56230 OS=Arabidopsis thaliana GN=At3g56230 PE=2 SV=1 Back     alignment and function desciption
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 2/145 (1%)

Query: 1   AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGL 60
           A++S I K+ LD      +    +T  E+    E L+AL++FLYTG+L  +KL+K+V  L
Sbjct: 132 ASKSEIFKNILDSDGCKTAPEYAITLQEL--NSEQLQALLEFLYTGTLASDKLEKNVYAL 189

Query: 61  FAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELV 120
           F A D Y I YL+E+C  +M +S   S+ ++ L +        L++A + F+V+N++++V
Sbjct: 190 FIAADKYMIHYLQELCEQYMLSSLDISSVLNVLDVSDLGSSKTLKEACVGFVVRNMDDVV 249

Query: 121 FSDKYEESASAFPHLCVLITRGCFM 145
           FSDKYE  +    HLCV ITR   M
Sbjct: 250 FSDKYEPFSQKNQHLCVEITRAFLM 274
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LQ95|Y1164_ARATH BTB/POZ domain-containing protein At1g01640 OS=Arabidopsis thaliana GN=At1g01640 PE=1 SV=1 Back     alignment and function description
>sp|Q9SJ29|Y2533_ARATH Putative BTB/POZ domain-containing protein At2g05330 OS=Arabidopsis thaliana GN=At2g05330 PE=3 SV=1 Back     alignment and function description
>sp|O22891|Y2044_ARATH Putative BTB/POZ domain-containing protein At2g40440 OS=Arabidopsis thaliana GN=At2g40440 PE=3 SV=2 Back     alignment and function description
>sp|Q7T330|SPOP_DANRE Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1 Back     alignment and function description
>sp|O81432|Y4409_ARATH Putative BTB/POZ domain-containing protein At4g04090 OS=Arabidopsis thaliana GN=At4g04090 PE=3 SV=1 Back     alignment and function description
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q6ZWS8|SPOP_MOUSE Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1 Back     alignment and function description
>sp|O43791|SPOP_HUMAN Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q0VCW1|SPOP_BOVIN Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
224128746189 predicted protein [Populus trichocarpa] 0.916 0.756 0.441 4e-24
297736526 281 unnamed protein product [Vitis vinifera] 0.948 0.526 0.433 1e-22
359486352 270 PREDICTED: BTB/POZ domain-containing pro 0.948 0.548 0.433 1e-22
297820382 276 hypothetical protein ARALYDRAFT_348708 [ 0.916 0.518 0.393 1e-20
449441572 266 PREDICTED: BTB/POZ domain-containing pro 0.929 0.545 0.407 2e-20
15228868 282 BTB/POZ domain-containing protein [Arabi 0.916 0.507 0.386 1e-19
255559613 267 protein binding protein, putative [Ricin 0.948 0.554 0.413 2e-18
15223447207 BTB/POZ domain-containing protein [Arabi 0.942 0.710 0.350 6e-14
33589788207 At3g01790 [Arabidopsis thaliana] gi|1107 0.942 0.710 0.344 1e-13
356540032184 PREDICTED: BTB/POZ domain-containing pro 0.929 0.788 0.351 4e-13
>gi|224128746|ref|XP_002328956.1| predicted protein [Populus trichocarpa] gi|222839190|gb|EEE77541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 2/145 (1%)

Query: 1   AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGL 60
           AARS I K+ LD       ++D +   E+  +   L++L++FLY+G+LP EKL+KHV  L
Sbjct: 44  AARSEIFKNMLDSDAYKAPASDTIMLPELNHQE--LESLLEFLYSGNLPSEKLEKHVYSL 101

Query: 61  FAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELV 120
             A D Y+I YL + C  HM     SSNA+D L I        L++ +LNFIVKN+E++V
Sbjct: 102 TLAADKYDIPYLLKFCERHMLRFLNSSNALDVLEISDTCSNKTLKETALNFIVKNMEDVV 161

Query: 121 FSDKYEESASAFPHLCVLITRGCFM 145
           FS KYE      PHL V ITR   M
Sbjct: 162 FSTKYEAFVPENPHLAVQITRALLM 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736526|emb|CBI25397.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359486352|ref|XP_003633433.1| PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297820382|ref|XP_002878074.1| hypothetical protein ARALYDRAFT_348708 [Arabidopsis lyrata subsp. lyrata] gi|297323912|gb|EFH54333.1| hypothetical protein ARALYDRAFT_348708 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449441572|ref|XP_004138556.1| PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Cucumis sativus] gi|449499220|ref|XP_004160755.1| PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15228868|ref|NP_191182.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75264422|sp|Q9LYL9.1|Y3623_ARATH RecName: Full=BTB/POZ domain-containing protein At3g56230 gi|7572921|emb|CAB87422.1| putative protein [Arabidopsis thaliana] gi|45825155|gb|AAS77485.1| At3g56230 [Arabidopsis thaliana] gi|51970740|dbj|BAD44062.1| putative protein [Arabidopsis thaliana] gi|332645978|gb|AEE79499.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255559613|ref|XP_002520826.1| protein binding protein, putative [Ricinus communis] gi|223539957|gb|EEF41535.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15223447|ref|NP_171670.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|30678163|ref|NP_849574.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75311457|sp|Q9LQ95.1|Y1164_ARATH RecName: Full=BTB/POZ domain-containing protein At1g01640 gi|8671833|gb|AAF78396.1|AC009273_2 Contains similarity to the speckle-type POZ protein from Homo sapiens gb|AJ000644. It contains a BTB/POZ domain PF|00651 [Arabidopsis thaliana] gi|332189194|gb|AEE27315.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|332189195|gb|AEE27316.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|33589788|gb|AAQ22660.1| At3g01790 [Arabidopsis thaliana] gi|110739209|dbj|BAF01519.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356540032|ref|XP_003538495.1| PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
TAIR|locus:2078421282 AT3G56230 [Arabidopsis thalian 0.916 0.507 0.386 5.5e-22
TAIR|locus:2198140207 AT1G01640 [Arabidopsis thalian 0.871 0.657 0.373 1.6e-17
TAIR|locus:2061873209 AT2G40450 [Arabidopsis thalian 0.961 0.717 0.312 2.3e-14
TAIR|locus:2051294215 AT2G05330 [Arabidopsis thalian 0.858 0.623 0.333 2.7e-13
TAIR|locus:2166066224 AT5G48510 [Arabidopsis thalian 0.891 0.620 0.284 5.8e-11
TAIR|locus:2136622192 AT4G04090 [Arabidopsis thalian 0.903 0.734 0.306 1.1e-09
ZFIN|ZDB-GENE-040426-1378374 spop "speckle-type POZ protein 0.75 0.312 0.28 3.4e-08
RGD|1311613335 Spop "speckle-type POZ protein 0.75 0.349 0.272 1.6e-07
UNIPROTKB|E1C049374 SPOP "Uncharacterized protein" 0.75 0.312 0.272 2e-07
UNIPROTKB|Q0VCW1374 SPOP "Speckle-type POZ protein 0.75 0.312 0.272 2e-07
TAIR|locus:2078421 AT3G56230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 56/145 (38%), Positives = 87/145 (60%)

Query:     1 AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGL 60
             A++S I K+ LD      +    +T  E+    E L+AL++FLYTG+L  +KL+K+V  L
Sbjct:   132 ASKSEIFKNILDSDGCKTAPEYAITLQEL--NSEQLQALLEFLYTGTLASDKLEKNVYAL 189

Query:    61 FAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELV 120
             F A D Y I YL+E+C  +M +S   S+ ++ L +        L++A + F+V+N++++V
Sbjct:   190 FIAADKYMIHYLQELCEQYMLSSLDISSVLNVLDVSDLGSSKTLKEACVGFVVRNMDDVV 249

Query:   121 FSDKYEESASAFPHLCVLITRGCFM 145
             FSDKYE  +    HLCV ITR   M
Sbjct:   250 FSDKYEPFSQKNQHLCVEITRAFLM 274
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2198140 AT1G01640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061873 AT2G40450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051294 AT2G05330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166066 AT5G48510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136622 AT4G04090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1378 spop "speckle-type POZ protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1311613 Spop "speckle-type POZ protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C049 SPOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCW1 SPOP "Speckle-type POZ protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 4e-07
pfam00651101 pfam00651, BTB, BTB/POZ domain 5e-04
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information 
 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 34  EVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFL 93
           +    ++ ++YTG +       +V  + +  +   I++L  +C++++      +N ID  
Sbjct: 57  DSFNEVIKYIYTGKI--NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIY 114

Query: 94  RIGYNYQLDELRDASLNFIVKNVEELVFSDK 124
           R  + Y   +L  A+ N+I  N+ EL+++D 
Sbjct: 115 RFSFFYGCKKLYSAAYNYIRNNI-ELIYNDP 144

Length = 534
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 156
PHA02790 480 Kelch-like protein; Provisional 99.94
PHA02713 557 hypothetical protein; Provisional 99.92
PHA03098 534 kelch-like protein; Provisional 99.92
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.91
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.82
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.73
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.72
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.62
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.53
KOG4591280 consensus Uncharacterized conserved protein, conta 99.5
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.46
KOG0511516 consensus Ankyrin repeat protein [General function 98.68
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 98.16
KOG2838401 consensus Uncharacterized conserved protein, conta 98.09
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.99
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.82
KOG3473112 consensus RNA polymerase II transcription elongati 97.74
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.45
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 97.37
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.85
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 96.38
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 95.94
KOG0783 1267 consensus Uncharacterized conserved protein, conta 95.92
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 95.7
KOG2714 465 consensus SETA binding protein SB1 and related pro 95.4
KOG1778 319 consensus CREB binding protein/P300 and related TA 95.19
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 94.1
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 93.65
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 92.44
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 92.33
KOG2838401 consensus Uncharacterized conserved protein, conta 91.93
KOG2715210 consensus Uncharacterized conserved protein, conta 88.68
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 87.87
KOG0511 516 consensus Ankyrin repeat protein [General function 86.26
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 85.33
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 80.48
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information 
Probab=99.94  E-value=7.6e-27  Score=186.42  Aligned_cols=122  Identities=20%  Similarity=0.308  Sum_probs=114.0

Q ss_pred             CcCcHHHHHhh-cCCCCCCCCCCCeee--CCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHH
Q 042328            1 AARSSILKDCL-DGKLLPISSTDGMTT--MEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL   77 (156)
Q Consensus         1 aa~S~yF~~mf-~~~~e~~~~~~~i~l--~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~   77 (156)
                      ||+|+||++|| ++++|+.+   +|.+  .+++  +.+++.+|+|+|||++.+  +.++|++++.+|++||++.+++.|.
T Consensus        41 Aa~S~YFraMF~~~~~Es~~---~v~~~~~~v~--~~~l~~lldy~YTg~l~i--t~~nV~~ll~aA~~Lqi~~v~~~C~  113 (480)
T PHA02790         41 KKLSPYFRTHLRQKYTKNKD---PVTRVCLDLD--IHSLTSIVIYSYTGKVYI--DSHNVVNLLRASILTSVEFIIYTCI  113 (480)
T ss_pred             hhcCHHHHHHhcCCcccccc---ceEEEecCcC--HHHHHHHHHhheeeeEEE--ecccHHHHHHHHHHhChHHHHHHHH
Confidence            68999999999 99999954   4555  3899  999999999999999999  9999999999999999999999999


Q ss_pred             HHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcc--hhHHHHH
Q 042328           78 HHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFS--DKYEESA  129 (156)
Q Consensus        78 ~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~--~~f~~l~  129 (156)
                      ++|.++++++||+.++.+|+.|++.+|.+.|.+||.+||.++.++  ++|..|+
T Consensus       114 ~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~  167 (480)
T PHA02790        114 NFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS  167 (480)
T ss_pred             HHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence            999999999999999999999999999999999999999999986  7887754

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 8e-06
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 1e-04
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 32  EGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91
           E EV K ++ F+YTG  P   L K    L AA D Y +E L+ +C   + ++    NA +
Sbjct: 222 EPEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 279
Query: 92  FLRIGYNYQLDELRDASLNFI 112
            L +   +  D+L+  +++FI
Sbjct: 280 ILILADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 5e-15
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 7e-13
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 4e-10
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 5e-10
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 1e-09
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
 Score = 67.3 bits (165), Expect = 5e-15
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 32  EGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91
           E EV K ++ F+YTG  P   L K    L AA D Y +E L+ +C   + ++    NA +
Sbjct: 82  EPEVFKEMMCFIYTGKAP--NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 139

Query: 92  FLRIGYNYQLDELRDASLNFIVKNVEELVFSD 123
            L +   +  D+L+  +++FI  +  +++ + 
Sbjct: 140 ILILADLHSADQLKTQAVDFINYHATDVLETS 171
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.94
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.94
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.93
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.92
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.86
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.76
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.75
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.73
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.72
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.71
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.7
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.69
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.68
2vpk_A116 Myoneurin; transcription regulation, transcription 99.68
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.63
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.61
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.61
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.6
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.5
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.47
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.42
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.06
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.03
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.85
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.72
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.29
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.19
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.13
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.74
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.72
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.98
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 92.95
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 91.82
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 91.56
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 89.77
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 89.69
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 89.11
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 88.36
2vpk_A116 Myoneurin; transcription regulation, transcription 87.96
3b84_A119 Zinc finger and BTB domain-containing protein 48; 87.37
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 87.31
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 86.97
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 86.46
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 84.99
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 84.45
3kvt_A115 Potassium channel protein SHAW; tetramerization do 84.41
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 82.12
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=1.7e-26  Score=160.35  Aligned_cols=117  Identities=26%  Similarity=0.419  Sum_probs=107.0

Q ss_pred             CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328            1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH   79 (156)
Q Consensus         1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~   79 (156)
                      |++|+||++|| ++++|+..  ..|.+++++  +.+|+.+|+|+|+|.+.+  +.+++.+++.+|++|+++.|+..|+++
T Consensus        54 ~~~S~~F~~~f~~~~~e~~~--~~i~l~~~~--~~~f~~~l~~~Yt~~~~~--~~~~~~~ll~~A~~~~~~~l~~~c~~~  127 (172)
T 3htm_A           54 AARSPVFSAMFEHEMEESKK--NRVEINDVE--PEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDA  127 (172)
T ss_dssp             HHHCHHHHHHHHSCCCGGGT--TEEEECSSC--HHHHHHHHHHHHHSCCTT--GGGTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCHHHHHHHccCccccCC--CeEEecCCC--HHHHHHHHHHHhCCCCCC--cHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            47899999999 99999988  899999999  999999999999999998  889999999999999999999999999


Q ss_pred             HhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcch
Q 042328           80 MPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSD  123 (156)
Q Consensus        80 l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~  123 (156)
                      |...++.+||+.++.+|..|++++|.+.|.+||.+|+.++..++
T Consensus       128 l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~  171 (172)
T 3htm_A          128 LCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETS  171 (172)
T ss_dssp             HHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------
T ss_pred             HHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999998765
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.72
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.65
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.69
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.5
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 94.43
d1t1da_100 Shaker potassium channel {California sea hare (Apl 93.91
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 93.31
d3kvta_103 akv3.1 voltage-gated potassium channel {California 92.67
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 92.61
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 92.15
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.4
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 89.28
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 87.5
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.1e-18  Score=111.89  Aligned_cols=76  Identities=21%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328            1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH   79 (156)
Q Consensus         1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~   79 (156)
                      |++|+||++|| +++.++..  ..+.+++++  +++|..+|+|+|||++.+  +.+++.+++.+|++|+++.|++.|+++
T Consensus        45 a~~S~~F~~~f~~~~~e~~~--~~~~~~~v~--~~~f~~ll~~~Ytg~~~i--~~~~v~~ll~~A~~l~i~~L~~~C~~~  118 (122)
T d1r29a_          45 MACSGLFYSIFTDQLKRNLS--VINLDPEIN--PEGFNILLDFMYTSRLNL--REGNIMAVMATAMYLQMEHVVDTCRKF  118 (122)
T ss_dssp             HHHCHHHHHHHTSTTTTTCS--EEECCTTSC--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhCCHHHHHHhccchhhhcc--eeeeecccC--HHHHHHHHhhhcCCeecC--chhhHHHHHHHHHHHCcHHHHHHHHHH
Confidence            47899999999 99998877  667778999  999999999999999998  888999999999999999999999999


Q ss_pred             Hhh
Q 042328           80 MPA   82 (156)
Q Consensus        80 l~~   82 (156)
                      |..
T Consensus       119 L~~  121 (122)
T d1r29a_         119 IKA  121 (122)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure