Citrus Sinensis ID: 042352

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MPLSLSSSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccEEEEEEEEccEEEcccccccccccHHHHHHHHHccccccccccccEEEEccEEEEcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHcccccccHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccEEEEEEEEEEEEccccccEEEEccccEEEEEcEEEEcccHHHHHHHcccccccccccccEEEEEEEEcccccccccccEEEEcccccccEEEEEEEccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccccccccccccccccccccccccccccccccccEEEEccEHHHHHHHHHHHHccccEEEEEcccccEccccEEccccEEEcccccHcccccHHHHHHcccccccccccccccEEEEcccEEEEcccccccHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEEEEEEEccccccEEEEEEcccEEcccEEEEEEEccHHHHHHHcccccccccccccEEEEEEEcccccccccccEEEEcccccccEcEEEEcccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
mplslssssllfpsftinskphrftfniqasssssskqlslnsklerkdRVIVIGAGLAGLAAATRLHSQGRPFVLLEasdavggrvrtdsvdgflldrGFQIFITAYPEAQKLLDYNALNLQKFYSgakvyyngqfhtvadpfrHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTdeqiltssevPIIELLRnigfsdsiidsffrpffggiffdkeletsSRLFDFIFKCLalgdntipangicqipnqiasklpfesILLNTRVlsidfdeqnmpnvrlangetlkSEIGVILAveepeadkllrqpvkfqrkparstvclyfsadkdeipvqepvlflngsgkgivnnmffatnvaplygpldKALISVSLIGLFadvmddnlTAEVIRELSDWfgkstvgswrhLRTYRvrfaqpnqspptdliknpksefslAVYLC
Flexible Loop (DISEMBL)
mplslssssllfpSFTINSKPHRFTFniqasssssskqlslnsklerkDRVIVIGAGLAGLAAATRLHSQGRPFVLLeasdavggrvrTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIktdeqiltssevpIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEepeadkllrqpvkfqrkparsTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRfaqpnqspptdliknpksefslavylc
Low Complexity Region (SEG)
MplslssssllfpsfTINSKPHRFTFNIQAsssssskqlslnsklERKDRVIVIgaglaglaaaTRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSffrpffggiffDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC
Disordered region (IsUnstruct)
************************************************DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFA*************************
Disordered Region (DISOPRED)
***************************************************IVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC
Disordered Region (DISEMBL)
********SLLFPSFTINSKPHRFTFNI****************LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC
Disordered Region (DISPRO)
*********LL***********************************RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLSLSSSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
P40974	478	Putrescine oxidase OS=Koc	N/A	no	0.233	0.217	0.383	4e-08
Q40406	570	Phytoene dehydrogenase, c	N/A	no	0.361	0.282	0.24	1e-07
P81383	491	L-amino-acid oxidase OS=O	N/A	no	0.114	0.103	0.450	3e-07
Q0DUI8	578	Phytoene dehydrogenase, c	no	no	0.352	0.271	0.245	5e-07
A2XDA1	578	Phytoene dehydrogenase, c	N/A	no	0.352	0.271	0.245	5e-07
O32434	527	Protoporphyrinogen oxidas	N/A	no	0.348	0.294	0.284	9e-07
P49086	571	Phytoene dehydrogenase, c	N/A	no	0.148	0.115	0.447	1e-06
Q07356	566	15-cis-phytoene desaturas	no	no	0.161	0.127	0.397	2e-06
Q94IG7	531	Protoporphyrinogen oxidas	N/A	no	0.150	0.126	0.402	2e-06
P28553	570	Phytoene dehydrogenase, c	no	no	0.159	0.124	0.402	3e-06

>sp|P40974|PUO_KOCRO Putrescine oxidase OS=Kocuria rosea GN=puo PE=1 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 36  SKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF 95
           + Q +L S+   +  V+V+GAG AGL AA  L + GR   +LEA D VGGR  + +VDG 
Sbjct: 2   TDQRTLGSETAIERDVVVVGAGPAGLMAARTLVAAGRTVAVLEARDRVGGRTWSKTVDGA 61

Query: 96  LLDRGFQIFITAYPEAQKLLDYNAL-NLQKFYSGAKVYY--NGQFHT 139
            L+ G Q       E   L+D   L   Q++  G  VY   +G  HT
Sbjct: 62  FLEIGGQWISPDQTELLALVDELGLETYQRYREGESVYLAPDGTRHT 108

Kocuria rosea (taxid: 1275)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 1EC: 0

>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 14/175 (8%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIF 104
           E+   V+V+GAGLAGL+ A  L   G   +LLE+ D +GG++      DG   + G  IF
Sbjct: 95  EKGLEVVVVGAGLAGLSTAKYLADAGHKPILLESRDVLGGKIAAWKDKDGDWYETGLHIF 154

Query: 105 ITAYPEAQKLLDYNALNLQKFYSGAKVYYN-----GQF------HTVADPFRHFWDSIKS 153
             AYP  Q L     +N +  +    + +      G+F        +  P    W  +++
Sbjct: 155 FGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRN 214

Query: 154 LANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFF 208
             N + +  +K+   +  +  ++     +     + + E +R  G  D + D  F
Sbjct: 215 --NEMLTWPEKVRFAIGLLPAMVGGQAYVEAQDGLTVTEWMRRQGVPDRVNDEVF 267

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Narcissus pseudonarcissus (taxid: 39639)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P81383|OXLA_OPHHA L-amino-acid oxidase OS=Ophiophagus hannah PE=1 SV=3

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG 100
           +++++GAG++GL AA      G   V+LEASD VGGR++T   DG+ +D G
Sbjct: 53  KIVIVGAGISGLTAAKLFREAGHEVVILEASDRVGGRIKTHREDGWYVDVG 103

Catalyzes an oxidative deamination of predominantly hydrophobic and aromatic L-amino acids, thus producing hydrogen peroxide that may contribute to the diverse toxic effects of this enzyme. Unlike most snake L-amino-acid oxidases, this enzyme exhibits potent activity against L-Lys. Has also potent activity against L-Met, L-Leu, L-His, L-Lys and L-Ile. Its activity on platelet aggregation is controversial. It has potent inhibitory activity on platelet aggregation induced by ADP and the thromboxane analog U46619, but not by thrombin, mucetin, ristocetin and stejnulxin (PubMed:17543361), but it has also been shown to induce platelet aggregation through the formation of hydrogen peroxide (PubMed:7886693). It binds to bacteria and shows antibacterial activities by generating hydrogen peroxide. Binding and antibacterial activities are higher against Gram-positive than against Gram-negative bacteria. May also have an ability to induce hemorrhage, hemolysis, edema, apoptosis.

Ophiophagus hannah (taxid: 8665)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 2

>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 14/171 (8%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAY 108
           +V++ GAGLAGL+ A  L   G   +LLEA D +GG++      DG   + G  IF  AY
Sbjct: 106 QVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAY 165

Query: 109 PEAQKLLDYNALNLQKFYSGAKVYYN-----GQF------HTVADPFRHFWDSIKSLANP 157
           P  Q L     +N +  +    + +      G+F       T+  P    W  +++  N 
Sbjct: 166 PNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRN--NE 223

Query: 158 IGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFF 208
           + +  +K+   L  +  ++     +       + E ++  G  D + D  F
Sbjct: 224 MLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVF 274

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 14/171 (8%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAY 108
           +V++ GAGLAGL+ A  L   G   +LLEA D +GG++      DG   + G  IF  AY
Sbjct: 106 QVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAY 165

Query: 109 PEAQKLLDYNALNLQKFYSGAKVYYN-----GQF------HTVADPFRHFWDSIKSLANP 157
           P  Q L     +N +  +    + +      G+F       T+  P    W  +++  N 
Sbjct: 166 PNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRN--NE 223

Query: 158 IGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFF 208
           + +  +K+   L  +  ++     +       + E ++  G  D + D  F
Sbjct: 224 MLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVF 274

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|O32434|PPOX_PROFF Protoporphyrinogen oxidase OS=Propionibacterium freudenreichii subsp. freudenreichii GN=hemY PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 21/176 (11%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
           ++V+G G+ GLAAA +  ++G    ++E+ D  GG+V TD  DGFL+++G   F+   P 
Sbjct: 29  LVVVGGGITGLAAAWQGMARGARVSVVESDDHFGGKVVTDRRDGFLVEQGPDSFVAYRPA 88

Query: 111 AQKLLDYNALNLQKFYSGA----KVYYNGQFHTVAD------PFRHFWDSIKSLANPIGS 160
           A KL++   L+ Q    G      +   G+   +        P R  W  + +    + S
Sbjct: 89  ALKLIEELGLSDQVIAPGGGRRVSLLSRGKLRPMPAGMGMVLPTR-MWPFVTTT---VLS 144

Query: 161 VLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIF 216
             DK+  GL  +        + L   +V I   LR     D I+  F  P  GGI+
Sbjct: 145 WPDKIRAGLDLVI------PRRLPDHDVAIGAFLRQR-LGDGIVRRFADPMVGGIY 193

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.

Propionibacterium freudenreichii subsp. freudenreichii (taxid: 66712)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAY 108
           +V+V GAGLAGL+ A  L   G   +LLEA D +GG+V      DG   + G  IF  AY
Sbjct: 98  QVVVAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY 157

Query: 109 PEAQKLL 115
           P  Q L 
Sbjct: 158 PNIQNLF 164

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAY 108
           +V++ GAGLAGL+ A  L   G   +LLEA D +GG++      DG   + G  IF  AY
Sbjct: 94  KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAY 153

Query: 109 PEAQKLLDYNALN 121
           P  Q L     +N
Sbjct: 154 PNVQNLFGELGIN 166

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP 109
           RV V+GAG++GLAAA +L S G    L EA    GG+++T   DG + D G      +  
Sbjct: 44  RVAVVGAGVSGLAAAYKLKSNGLNVTLFEADSRAGGKLKTVVKDGLIWDEGANTMTESDE 103

Query: 110 EAQKLLD 116
           E   L D
Sbjct: 104 EVTSLFD 110

Provides precursor for the mitochondrial and plastidic heme synthesis and the predominant chlorophyll synthesis in plastids.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAYP 109
           +++ GAGLAGL+ A  L   G   +LLEA D +GG+V      DG   + G  IF  AYP
Sbjct: 101 IVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYP 160

Query: 110 EAQKLLDYNALN 121
             Q L     +N
Sbjct: 161 YVQNLFGELGIN 172

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
255548572	481	amine oxidase, putative [Ricinus communi	0.950	0.879	0.678	1e-161
356512089	476	PREDICTED: phytoene dehydrogenase, chlor	0.959	0.897	0.678	1e-157
225447797	463	PREDICTED: phytoene dehydrogenase, chlor	0.955	0.917	0.667	1e-155
449494767	473	PREDICTED: LOW QUALITY PROTEIN: phytoene	0.883	0.830	0.706	1e-154
449437759	473	PREDICTED: 15-cis-phytoene desaturase, c	0.883	0.830	0.706	1e-154
15232718	477	FAD/NAD(P)-binding oxidoreductase domain	0.959	0.895	0.639	1e-150
297833720	477	amine oxidase family protein [Arabidopsi	0.826	0.771	0.679	1e-148
302773235	423	hypothetical protein SELMODRAFT_64109 [S	0.840	0.884	0.548	1e-117
302806990	423	hypothetical protein SELMODRAFT_44048 [S	0.840	0.884	0.545	1e-117
326515588	472	predicted protein [Hordeum vulgare subsp	0.968	0.913	0.514	1e-113

>gi|255548572|ref|XP_002515342.1| amine oxidase, putative [Ricinus communis] gi|223545286|gb|EEF46791.1| amine oxidase, putative [Ricinus communis]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/433 (67%), Positives = 355/433 (81%), Gaps = 10/433 (2%)

Query: 19  SKPHRFTFNIQASSSSSSKQLSLN---SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFV 75
           S P  F+   +  +SS+ +QLS N   S  ++K  VIVIGAGLAGLAAATRL+S+  PF+
Sbjct: 21  SSPKNFSIKFKLRASST-QQLSSNPTSSTPKQKTGVIVIGAGLAGLAAATRLNSENVPFI 79

Query: 76  LLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNG 135
           LLEASD VGGRVRTD VDGF+LDRGFQIFITAYPEAQKLLDY AL+LQ+FYSGAK+Y++G
Sbjct: 80  LLEASDGVGGRVRTDIVDGFILDRGFQIFITAYPEAQKLLDYQALDLQRFYSGAKIYFDG 139

Query: 136 QFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLR 195
           QF+TVADP RHFWD+++SL NPIGS+LDKLLIG TR++ L K+D +I ++SEV  I+LL+
Sbjct: 140 QFYTVADPLRHFWDAVESLTNPIGSILDKLLIGSTRLQALAKSDNEIFSASEVTTIDLLK 199

Query: 196 NIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIA 255
           NIGFSDSI+  FFRPFFGGIFFD EL+T+SRLF+FIFKCLALGDNT+PA GI  IPNQ+A
Sbjct: 200 NIGFSDSIVSRFFRPFFGGIFFDSELQTTSRLFNFIFKCLALGDNTLPAKGIGAIPNQLA 259

Query: 256 SKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLL--RQPV 313
           +KLP  S+ L+TRV SID +  N P+V L +GE ++SE+GVILAVEEPE DKL   R  +
Sbjct: 260 AKLPPNSVFLDTRVASIDIERAN-PSVTLQSGEIVQSEMGVILAVEEPEVDKLFAGRNDI 318

Query: 314 K-FQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKAL 372
           K  Q+KP RSTVC+YFSAD+D++PVQ+P LFLNGSGKGI+NNMFFATNVAP YGP DKAL
Sbjct: 319 KPVQKKPYRSTVCVYFSADRDKVPVQDPALFLNGSGKGIINNMFFATNVAPSYGPPDKAL 378

Query: 373 ISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIK 432
           +SVSLIGLF DV DD+LT E++ ELS WFG S V SW++LRTYR+ FAQPNQ PPTDL+K
Sbjct: 379 VSVSLIGLFEDVSDDDLTVEIVGELSGWFGSSIVKSWKYLRTYRIGFAQPNQCPPTDLMK 438

Query: 433 NPKSEFSLAVYLC 445
              S     +YLC
Sbjct: 439 T--SRVGSGLYLC 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512089|ref|XP_003524753.1| PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Glycine max]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/435 (67%), Positives = 346/435 (79%), Gaps = 8/435 (1%)

Query: 15  FTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDR-VIVIGAGLAGLAAATRLHSQGRP 73
           + ++S P RF FN Q++  S S    L S    K   VIVIGAGLAGLAAAT L+SQ  P
Sbjct: 14  YFLSSSPKRFRFNTQSAQLSPSSSSPLQSPPLPKTTGVIVIGAGLAGLAAATHLNSQNIP 73

Query: 74  FVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYY 133
           F+LLEASDAVGGRVRTD VDGFLLDRGFQIFITAYPEAQKLL+Y +LNLQKFYSGA+++Y
Sbjct: 74  FLLLEASDAVGGRVRTDIVDGFLLDRGFQIFITAYPEAQKLLNYQSLNLQKFYSGARIFY 133

Query: 134 NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIEL 193
           +GQFHTVADP RHFWDS +SL NPIGS LDKLLIG TRIR L+K+DE+ILT+ EVP IEL
Sbjct: 134 DGQFHTVADPLRHFWDSARSLTNPIGSPLDKLLIGSTRIRALVKSDEEILTAEEVPTIEL 193

Query: 194 LRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQ 253
           L+ +GFSDSII  FFRPFFGGIFFD +LET+SRLF+FIFKCLALGDNT+PA GI  IP Q
Sbjct: 194 LKKLGFSDSIIRRFFRPFFGGIFFDPDLETTSRLFNFIFKCLALGDNTLPARGISAIPEQ 253

Query: 254 IASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLR--- 310
           +A++LP  SILLN++ +S+D D  + P VRL NG+ LKSE+GVI+AVEEP A  LL    
Sbjct: 254 LAARLPSGSILLNSKAVSVDLDNSDSPLVRLQNGDVLKSELGVIVAVEEPAAVHLLSGRT 313

Query: 311 QPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDK 370
            PV   +KP RSTVCLYF+A++D+IPV +PVLFLNGSGKGIVNNMFF TNVAP +GP DK
Sbjct: 314 GPVP--KKPVRSTVCLYFTANRDQIPVPDPVLFLNGSGKGIVNNMFFVTNVAPSFGPPDK 371

Query: 371 ALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDL 430
            L+SVSLIGLF  V D+ L  +V+ ELS WFG+  V  W HLRTYR+ FAQPNQ PPTDL
Sbjct: 372 GLVSVSLIGLFEGVSDEELVGKVVNELSGWFGEKMVSKWNHLRTYRIGFAQPNQCPPTDL 431

Query: 431 IKNPKSEFSLAVYLC 445
            K+P+ E  L  Y+C
Sbjct: 432 KKDPRVESGL--YVC 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447797|ref|XP_002266648.1| PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic [Vitis vinifera] gi|296081484|emb|CBI20007.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/451 (66%), Positives = 359/451 (79%), Gaps = 26/451 (5%)

Query: 1   MPLSLSSSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSK-----LERKDRVIVIG 55
           M L+LS  SL          P RF+F  +      S QLS++S       ER+  V+VIG
Sbjct: 1   MSLTLSLPSL--------PTPRRFSFQPR------SVQLSIDSPGSFSPSERQTGVVVIG 46

Query: 56  AGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLL 115
           AGLAGLAAATRLHS+  PF++LEASDAVGGRVRTD V GFLLDRGFQIFITAYPEA++LL
Sbjct: 47  AGLAGLAAATRLHSENIPFLVLEASDAVGGRVRTDPVAGFLLDRGFQIFITAYPEAKRLL 106

Query: 116 DYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVL 175
           DY AL+LQKFY+GA+VYY G FHTVADP  HFWDSI++L NPIG+VLDKLLIGL R+RVL
Sbjct: 107 DYQALDLQKFYAGARVYYGGGFHTVADPVLHFWDSIQTLTNPIGTVLDKLLIGLARLRVL 166

Query: 176 IKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL 235
            ++DE+IL + EVP IE LR  GFS+SII  FFRPFFGG+FFD+ELET+SRLFDFIFKCL
Sbjct: 167 SRSDEEILAADEVPTIEFLRKFGFSESIIGRFFRPFFGGVFFDRELETTSRLFDFIFKCL 226

Query: 236 ALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIG 295
           ALGDNT+PA GI  IP Q+ASKLP  S+LLN++V+S+  D      VRL NG+T+KSE+G
Sbjct: 227 ALGDNTLPAKGISAIPEQLASKLPTGSVLLNSKVVSV--DRSGSGTVRLQNGDTIKSELG 284

Query: 296 VILAVEEPEADKLLR-QPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNN 354
           V++AVEEPE  KLL  +P   ++KPARSTVCLYFSAD+ +IPV+EP+LFLNGSGKGIVNN
Sbjct: 285 VVVAVEEPEVAKLLGLKPA--EKKPARSTVCLYFSADRRQIPVREPILFLNGSGKGIVNN 342

Query: 355 MFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRT 414
           MFFATNVAP YGP  KAL+SVSLIGL+  V D +LTA+VI ELSDWFG+S VGSW HLRT
Sbjct: 343 MFFATNVAPSYGPPGKALVSVSLIGLYDAVSDADLTAQVIGELSDWFGESIVGSWEHLRT 402

Query: 415 YRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445
           YRV FAQPNQSPPT+L+++P+      +Y+C
Sbjct: 403 YRVGFAQPNQSPPTNLVQDPR--IGSGIYVC 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494767|ref|XP_004159642.1| PREDICTED: LOW QUALITY PROTEIN: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Cucumis sativus]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/399 (70%), Positives = 333/399 (83%), Gaps = 6/399 (1%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
           V+VIGAGLAGLAAAT L S+  PF+LLEASD VGGRVRTD VDGFLLDRGFQIFITAYPE
Sbjct: 45  VVVIGAGLAGLAAATHLRSKNIPFILLEASDGVGGRVRTDLVDGFLLDRGFQIFITAYPE 104

Query: 111 AQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLT 170
           AQ LL+Y +L LQKFYSGA VY++ QFHTVADP RHF DS+ SL+NPIGSVLDKLLIGLT
Sbjct: 105 AQSLLNYQSLRLQKFYSGALVYHDRQFHTVADPLRHFIDSLGSLSNPIGSVLDKLLIGLT 164

Query: 171 RIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDF 230
           R RVL K+DE+I T+ EV  I+LL+ IGFSDSII  FFRPFFGGIFFD +LETSSRLF+F
Sbjct: 165 RARVLAKSDEEIFTADEVSTIDLLKQIGFSDSIISRFFRPFFGGIFFDTQLETSSRLFNF 224

Query: 231 IFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNM---PNVRLANG 287
           IFKCLALG+NT+P +GI  IP Q+AS LP E+ILLN++V+S+DFD+ +    P V+L +G
Sbjct: 225 IFKCLALGNNTLPVDGIGAIPQQLASNLPPETILLNSKVVSVDFDDSSKSKSPIVKLQSG 284

Query: 288 ETLKSEIGVILAVEEPEADKLLRQPVKF-QRKPARSTVCLYFSADKDEIPVQEPVLFLNG 346
           E ++SE+GVI+AVEEPEA +LL    K   RKP RSTVC+YF+ D++ IPV+EPVLFLNG
Sbjct: 285 EIIRSEMGVIVAVEEPEAGRLLAGRXKIGNRKPPRSTVCVYFTTDRERIPVKEPVLFLNG 344

Query: 347 SGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTV 406
           SGKGIVNNMFFATNVAP YGP +KAL+SVSLIG F  V D++LTAEVIRE+ DWFG+STV
Sbjct: 345 SGKGIVNNMFFATNVAPSYGPPEKALVSVSLIGKFEGVEDEDLTAEVIREMGDWFGESTV 404

Query: 407 GSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445
             W+HLRTYR+ FAQPNQSPP D++K+P  E  L  Y+C
Sbjct: 405 EGWKHLRTYRIEFAQPNQSPPWDVMKDPTVENGL--YVC 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437759|ref|XP_004136658.1| PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic-like [Cucumis sativus]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/399 (70%), Positives = 333/399 (83%), Gaps = 6/399 (1%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
           V+VIGAGLAGLAAAT L S+  PF+LLEASD VGGRVRTD VDGFLLDRGFQIFITAYPE
Sbjct: 45  VVVIGAGLAGLAAATHLRSKNIPFILLEASDGVGGRVRTDLVDGFLLDRGFQIFITAYPE 104

Query: 111 AQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLT 170
           AQ LL+Y +L LQKFYSGA VY++ QFHTVADP RHF DS+ SL+NPIGSVLDKLLIGLT
Sbjct: 105 AQSLLNYQSLRLQKFYSGALVYHDRQFHTVADPLRHFIDSLGSLSNPIGSVLDKLLIGLT 164

Query: 171 RIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDF 230
           R RVL K+DE+I T+ EV  I+LL+ IGFSDSII  FFRPFFGGIFFD +LETSSRLF+F
Sbjct: 165 RARVLAKSDEEIFTADEVSTIDLLKQIGFSDSIISRFFRPFFGGIFFDTQLETSSRLFNF 224

Query: 231 IFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNM---PNVRLANG 287
           IFKCLALG+NT+P +GI  IP Q+AS LP E+ILLN++V+S+DFD+ +    P V+L +G
Sbjct: 225 IFKCLALGNNTLPVDGIGAIPQQLASNLPPETILLNSKVVSVDFDDSSKSKSPIVKLQSG 284

Query: 288 ETLKSEIGVILAVEEPEADKLLRQPVKF-QRKPARSTVCLYFSADKDEIPVQEPVLFLNG 346
           E ++SE+GVI+AVEEPEA +LL    K   RKP RSTVC+YF+ D++ IPV+EPVLFLNG
Sbjct: 285 EIIRSEMGVIVAVEEPEAGRLLAGRKKIGNRKPPRSTVCVYFTTDRERIPVKEPVLFLNG 344

Query: 347 SGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTV 406
           SGKGIVNNMFFATNVAP YGP +KAL+SVSLIG F  V D++LTAEVIRE+ DWFG+STV
Sbjct: 345 SGKGIVNNMFFATNVAPSYGPPEKALVSVSLIGKFEGVEDEDLTAEVIREMGDWFGESTV 404

Query: 407 GSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445
             W+HLRTYR+ FAQPNQSPP D++K+P  E  L  Y+C
Sbjct: 405 EGWKHLRTYRIEFAQPNQSPPWDVMKDPTVENGL--YVC 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232718|ref|NP_187569.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6682237|gb|AAF23289.1|AC016661_14 putative oxidoreductase [Arabidopsis thaliana] gi|17381088|gb|AAL36356.1| putative oxidoreductase [Arabidopsis thaliana] gi|21436243|gb|AAM51260.1| putative oxidoreductase [Arabidopsis thaliana] gi|332641263|gb|AEE74784.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/446 (63%), Positives = 357/446 (80%), Gaps = 19/446 (4%)

Query: 1   MPLSLS----SSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGA 56
           MP+++S    S+S  FP    ++  HR+     A SS+    +  N     +  VI+IGA
Sbjct: 1   MPVAISLPTSSTSHFFPRRRGHAN-HRYQRFSGAQSSTEDPYIRKN-----QTGVIIIGA 54

Query: 57  GLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLD 116
           GLAGLAAA +L S+  PF+LLEASD VGGRVRTD VDGF LDRGFQIFITAYPEA+KLLD
Sbjct: 55  GLAGLAAANQLTSKRIPFLLLEASDGVGGRVRTDIVDGFFLDRGFQIFITAYPEAKKLLD 114

Query: 117 YNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLI 176
           Y AL+LQ+FY+GAKV+Y G+FHTVADP RHFWDS+ SLANPIGSV+DK LI LTR RVLI
Sbjct: 115 YEALDLQRFYAGAKVFYGGKFHTVADPLRHFWDSVASLANPIGSVVDKGLIALTRARVLI 174

Query: 177 KTDEQILTSS-EVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL 235
           K+DE+ILT++ EVP I+LLR IGFS++I+D FFRPFFGGIFFD++LET+S+LFDF+F+CL
Sbjct: 175 KSDEEILTAADEVPTIDLLRKIGFSETILDRFFRPFFGGIFFDRDLETTSKLFDFVFRCL 234

Query: 236 ALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE---QNMPNVRLANGETLKS 292
           ALG+NT+PA GI +I NQ+A+KLP +S+LLNTRV SI++      + P+VRL +G  +K+
Sbjct: 235 ALGENTLPAMGIGEISNQLAAKLPAKSVLLNTRVASIEYPNGSGSDPPSVRLQDGSVMKA 294

Query: 293 EIGVILAVEEPEADKLL---RQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGK 349
           E+GVI+AVE+PE +KLL   R PV    KPARST+CLYF+A+ ++IPVQ+PVLFLNGS  
Sbjct: 295 ELGVIIAVEQPEVNKLLDGIRDPVI--TKPARSTICLYFTAEPNQIPVQDPVLFLNGSNS 352

Query: 350 GIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSW 409
           GI+NNMFFATNVA  Y P  KAL+SVSLIGLF D  DD+L AEV+RELS WFG+S V SW
Sbjct: 353 GIINNMFFATNVARTYAPPGKALVSVSLIGLFEDRTDDDLAAEVLRELSGWFGESPVMSW 412

Query: 410 RHLRTYRVRFAQPNQSPPTDLIKNPK 435
           +HL+TYR++FAQPNQ PPTDL+K+P+
Sbjct: 413 KHLKTYRIQFAQPNQCPPTDLVKSPR 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833720|ref|XP_002884742.1| amine oxidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330582|gb|EFH61001.1| amine oxidase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/377 (67%), Positives = 316/377 (83%), Gaps = 9/377 (2%)

Query: 66  RLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF 125
           +L S+  PF+LLEASD VGGRVRTD VDGF LDRGFQIFITAYPEA+KLLDY +L+LQ+F
Sbjct: 65  QLTSKRIPFLLLEASDGVGGRVRTDIVDGFFLDRGFQIFITAYPEAKKLLDYESLDLQRF 124

Query: 126 YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTS 185
           Y+GAKV+Y G+FHTVADP RHFWDS+ SL NPIGSV+DK LI LTR RVLIK+DE+ILT+
Sbjct: 125 YAGAKVFYGGKFHTVADPLRHFWDSVASLTNPIGSVVDKGLIALTRARVLIKSDEEILTA 184

Query: 186 S-EVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPA 244
           + EVP I+LLR IGFS++I+D FFRPFFGGIFFD++LET+S+LFDF+F+CLALG+NT+P 
Sbjct: 185 ADEVPTIDLLRKIGFSEAILDRFFRPFFGGIFFDRDLETTSKLFDFVFRCLALGENTLPT 244

Query: 245 NGICQIPNQIASKLPFESILLNTRVLSIDFDE---QNMPNVRLANGETLKSEIGVILAVE 301
            GI +I NQ+A+KLP  S+LLNTRV S+++      + P+VRL +G  LK+E+GVI+AVE
Sbjct: 245 MGIGEISNQLAAKLPANSVLLNTRVASVEYPNGTGSDPPSVRLQDGGVLKAELGVIIAVE 304

Query: 302 EPEADKLL---RQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFA 358
           +PE DKLL   R PV    KPARST+CLYF+A+ ++IPVQ+PVLFLNG+  GI+NNMFFA
Sbjct: 305 QPEVDKLLDGIRDPVI--TKPARSTICLYFTAEPNQIPVQDPVLFLNGTNTGIINNMFFA 362

Query: 359 TNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVR 418
           TNVA  Y P  KAL+SVSLIG F D  DD+L AEVI ELS WFG+S+V SW+HL+TYR++
Sbjct: 363 TNVARTYAPPGKALVSVSLIGSFEDRSDDDLAAEVISELSGWFGESSVMSWKHLKTYRIQ 422

Query: 419 FAQPNQSPPTDLIKNPK 435
           FAQPNQ PPTDL+KNP+
Sbjct: 423 FAQPNQCPPTDLVKNPR 439

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302773235|ref|XP_002970035.1| hypothetical protein SELMODRAFT_64109 [Selaginella moellendorffii] gi|300162546|gb|EFJ29159.1| hypothetical protein SELMODRAFT_64109 [Selaginella moellendorffii]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/381 (54%), Positives = 278/381 (72%), Gaps = 7/381 (1%)

Query: 68  HSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYS 127
           H +G  F LLEASD VGGRVR+D+V G++LDRGFQIFI+AYPEA ++LDY  L L+ FY+
Sbjct: 18  HKEGVTFQLLEASDGVGGRVRSDTVQGYVLDRGFQIFISAYPEAAEVLDYQTLELKNFYA 77

Query: 128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSE 187
           GA V+++G+FH VADPFRH  D I SL NPIG+VLDK+L+G+ R++   +  E+++++ E
Sbjct: 78  GAFVWFDGRFHKVADPFRHLVDGILSLGNPIGTVLDKILVGIVRLQAASQPFEKLVSAPE 137

Query: 188 VPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGI 247
           V I E L+  GFS  +ID FFRPFFGGIFFD+EL+T+SRLF+F+FKCLALG N +PA GI
Sbjct: 138 VEIGEKLKADGFSSQMIDRFFRPFFGGIFFDRELKTTSRLFNFVFKCLALGQNCLPAKGI 197

Query: 248 CQIPNQIASKLPFESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEAD 306
            +I  Q+A  LP ESI LN+RV  +   E   +  VRL  G+ +KS+ G+I+AVE PEA 
Sbjct: 198 GEISQQLARSLPDESIKLNSRVQELLVGEDGKVSKVRLDTGKVVKSKYGIIVAVEGPEAA 257

Query: 307 KLL--RQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPL 364
           +LL  +   +   KPARSTVCLYFSAD+   P++E VL LNG+ KG++NNM F ++V   
Sbjct: 258 RLLSSKTACESTDKPARSTVCLYFSADR--APIKEAVLLLNGTDKGVINNMCFPSSVCSS 315

Query: 365 YGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQ 424
           Y P+ KAL+SV+LIG ++   D  L   V  EL +WFG+ TV  W+HL+TYR+ FAQP+Q
Sbjct: 316 YAPVGKALVSVTLIGRYSASSDAELEKIVRSELEEWFGRETVAKWQHLKTYRILFAQPDQ 375

Query: 425 SPPTDLIKNPKSEFSLAVYLC 445
           +PPT+L K PK +  L  YLC
Sbjct: 376 TPPTNLSKEPKVDAGL--YLC 394

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302806990|ref|XP_002985226.1| hypothetical protein SELMODRAFT_44048 [Selaginella moellendorffii] gi|300147054|gb|EFJ13720.1| hypothetical protein SELMODRAFT_44048 [Selaginella moellendorffii]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/381 (54%), Positives = 278/381 (72%), Gaps = 7/381 (1%)

Query: 68  HSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYS 127
           H +G  F LLEASD VGGRVR+D+V G++LDRGFQIFI+AYPEA ++LDY AL L+ FY+
Sbjct: 18  HKEGITFQLLEASDGVGGRVRSDTVQGYVLDRGFQIFISAYPEAAEVLDYQALELKNFYA 77

Query: 128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSE 187
           GA V+++G+FH VADPFRH  D I SL NPIG++ DK+L+G+ R++   +  E+++++ E
Sbjct: 78  GAFVWFDGRFHKVADPFRHLVDGILSLGNPIGTIQDKILVGIVRLQAASQPFEKLVSAPE 137

Query: 188 VPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGI 247
           V I E L+  GFS  +ID FFRPFFGGIFFD+EL+T+SRLF+F+FKCLALG N +PA GI
Sbjct: 138 VEIGEKLKTDGFSSQMIDRFFRPFFGGIFFDRELKTTSRLFNFVFKCLALGQNCLPAKGI 197

Query: 248 CQIPNQIASKLPFESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEAD 306
            +I  Q+A  LP ESI LN+RV  +   E   +  VRL  G+ +KS+ G+I+AVE PEA 
Sbjct: 198 GEISQQLARSLPEESIKLNSRVQELLVGEDGKVSKVRLDTGKVVKSKYGIIVAVEGPEAA 257

Query: 307 KLL--RQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPL 364
           +LL  +   +   KPARSTVCLYFSAD+   P++E VL LNG+ KG++NNM F ++V   
Sbjct: 258 RLLSSKTACESTDKPARSTVCLYFSADR--APIKEAVLLLNGTDKGVINNMCFPSSVCSS 315

Query: 365 YGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQ 424
           Y P+ KAL+SV+LIG ++   D  L   V  EL +WFG+ TV  W+HL+TYR+ FAQP+Q
Sbjct: 316 YAPVGKALVSVTLIGRYSTSSDAELEKIVRSELEEWFGRETVAKWQHLKTYRILFAQPDQ 375

Query: 425 SPPTDLIKNPKSEFSLAVYLC 445
           +PPT+L K PK +  L  YLC
Sbjct: 376 TPPTNLSKEPKVDAGL--YLC 394

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326515588|dbj|BAK07040.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/451 (51%), Positives = 301/451 (66%), Gaps = 20/451 (4%)

Query: 3   LSLSSSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLA 62
           + + ++ LL P   + S P R    ++ + S+++  +++N     + + +++G GLAGLA
Sbjct: 1   MRVHAAHLLVP---VPSTPRRHA-TLRFTVSAAATSVNVNQADAARKQAVIVGGGLAGLA 56

Query: 63  AATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNL 122
           AAT L S   PF LLEASD VGGRV TD VDG+LLDRGFQIF+TAYPE Q+LLD+ AL L
Sbjct: 57  AATHLASLSVPFTLLEASDRVGGRVATDEVDGYLLDRGFQIFLTAYPECQRLLDFQALRL 116

Query: 123 QKFYSGAKVYYNG-----QFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIK 177
           Q F+ GA VY         FH ++DPFR    S+ S+  P+G++ DKLL+G+TR+R    
Sbjct: 117 QPFFPGALVYLGAGESGSPFHMLSDPFRFPIRSLSSVFCPVGTLPDKLLVGITRLRAAAT 176

Query: 178 TDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLAL 237
            D+ IL+S E    + L  +GFS SI++ F RPF  GIFFD  L+TSSRLF+ +FK LAL
Sbjct: 177 PDDVILSSPETTTAKHLEKLGFSPSIVERFLRPFLAGIFFDPALDTSSRLFELVFKRLAL 236

Query: 238 GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVI 297
           GDN +P  GI  I  Q+  +LP  S+ LN R  SID        V L  GET+  E+GVI
Sbjct: 237 GDNAMPKAGIGAIAAQLVDRLPAGSVRLNARAASIDPSS----GVTLHTGETVSDELGVI 292

Query: 298 LAVEEPEADKLLRQ-PVKFQ-RKPA-RSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNN 354
           +AVE+PEA+KLL   P + + +KPA RSTVCLYFSAD+    VQEPVL +NGSGKGIVNN
Sbjct: 293 VAVEQPEAEKLLPLLPARPKSKKPAERSTVCLYFSADRAA--VQEPVLLVNGSGKGIVNN 350

Query: 355 MFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRT 414
           MFFATNVAP Y P  K L+S+SL+G FAD  D  L  EV+REL  WFG   V SW HLRT
Sbjct: 351 MFFATNVAPSYAPAGKVLVSLSLVGSFADRKDAELAGEVVRELGGWFGAGEVASWAHLRT 410

Query: 415 YRVRFAQPNQSPPTDL--IKNPKSEFSLAVY 443
           YR+ FAQP+Q+PPT+L  I    S +++ +Y
Sbjct: 411 YRIGFAQPDQTPPTELAYIHASTSIYAMCIY 441

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2075029	477	AT3G09580 [Arabidopsis thalian	0.869	0.811	0.635	3.9e-131

TAIR|locus:2075029 AT3G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 253/398 (63%), Positives = 317/398 (79%)

Query:    47 RKDR--VIVIXXXXXXXXXXTRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIF 104
             RK++  VI+I           +L S+  PF+LLEASD VGGRVRTD VDGF LDRGFQIF
Sbjct:    43 RKNQTGVIIIGAGLAGLAAANQLTSKRIPFLLLEASDGVGGRVRTDIVDGFFLDRGFQIF 102

Query:   105 ITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDK 164
             ITAYPEA+KLLDY AL+LQ+FY+GAKV+Y G+FHTVADP RHFWDS+ SLANPIGSV+DK
Sbjct:   103 ITAYPEAKKLLDYEALDLQRFYAGAKVFYGGKFHTVADPLRHFWDSVASLANPIGSVVDK 162

Query:   165 LLIGLTRIRVLIKTDEQILTSS-EVPIIELLRNIGFSDSIIDSXXXXXXXXXXXDKELET 223
              LI LTR RVLIK+DE+ILT++ EVP I+LLR IGFS++I+D            D++LET
Sbjct:   163 GLIALTRARVLIKSDEEILTAADEVPTIDLLRKIGFSETILDRFFRPFFGGIFFDRDLET 222

Query:   224 SSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE---QNMP 280
             +S+LFDF+F+CLALG+NT+PA GI +I NQ+A+KLP +S+LLNTRV SI++      + P
Sbjct:   223 TSKLFDFVFRCLALGENTLPAMGIGEISNQLAAKLPAKSVLLNTRVASIEYPNGSGSDPP 282

Query:   281 NVRLANGETLKSEIGVILAVEEPEADKLL---RQPVKFQRKPARSTVCLYFSADKDEIPV 337
             +VRL +G  +K+E+GVI+AVE+PE +KLL   R PV    KPARST+CLYF+A+ ++IPV
Sbjct:   283 SVRLQDGSVMKAELGVIIAVEQPEVNKLLDGIRDPVI--TKPARSTICLYFTAEPNQIPV 340

Query:   338 QEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIREL 397
             Q+PVLFLNGS  GI+NNMFFATNVA  Y P  KAL+SVSLIGLF D  DD+L AEV+REL
Sbjct:   341 QDPVLFLNGSNSGIINNMFFATNVARTYAPPGKALVSVSLIGLFEDRTDDDLAAEVLREL 400

Query:   398 SDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPK 435
             S WFG+S V SW+HL+TYR++FAQPNQ PPTDL+K+P+
Sbjct:   401 SGWFGESPVMSWKHLKTYRIQFAQPNQCPPTDLVKSPR 438


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      445       395   0.00096  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  229 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.67u 0.15s 28.82t   Elapsed:  00:00:02
  Total cpu time:  28.67u 0.15s 28.82t   Elapsed:  00:00:02
  Start:  Fri May 10 04:17:06 2013   End:  Fri May 10 04:17:08 2013

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031522001	SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (513 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027976001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (256 aa)		•							0.555

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	3e-31
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	2e-22
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-17
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	2e-16
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	3e-15
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	6e-10
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	8e-10
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	8e-10
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	8e-10
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	2e-09
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	4e-09
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	2e-08
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	4e-08
PLN02676	487	PLN02676, PLN02676, polyamine oxidase	5e-08
PLN02976	1713	PLN02976, PLN02976, amine oxidase	8e-08
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	1e-07
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	5e-07
PLN02568	539	PLN02568, PLN02568, polyamine oxidase	7e-07
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	8e-07
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	2e-06
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	8e-06
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	2e-05
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	2e-05
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	3e-05
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	4e-05
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	8e-05
TIGR01813	439	TIGR01813, flavo_cyto_c, flavocytochrome c	1e-04
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	2e-04
TIGR03997	645	TIGR03997, mycofact_OYE_2, mycofactocin system Fad	2e-04
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	2e-04
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	2e-04
PLN03000	881	PLN03000, PLN03000, amine oxidase	2e-04
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	3e-04
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	3e-04
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	4e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	4e-04
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	4e-04
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	5e-04
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	7e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	0.001
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.001
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	0.001
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	0.001
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	0.002
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	0.002
PRK07804	541	PRK07804, PRK07804, L-aspartate oxidase; Provision	0.002
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.002
PRK06481	506	PRK06481, PRK06481, fumarate reductase flavoprotei	0.003
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	0.003
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	0.004
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	0.004
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	0.004
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	0.004

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score =  124 bits (312), Expect = 3e-31
 Identities = 94/393 (23%), Positives = 136/393 (34%), Gaps = 39/393 (9%)

Query: 58  LAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDY 117
           LAGLAAA  L   G    +LEA D VGGR+RT   DGFL++ G Q F  AYP    LL  
Sbjct: 1   LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLLNLLLE 60

Query: 118 NALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLT-RIRVLI 176
             L L             +      P+      +      +   L +L + L   IR  +
Sbjct: 61  LGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSLEEPIRRAL 120

Query: 177 KTDEQILTSSEV-------PIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFD 229
                +L  +            +LL   GF + +    FR    G      LE S+RL  
Sbjct: 121 LLLVALLLLAPELLELDLLSFSDLLSAAGFLE-LFLLLFRSLLAGALGFLPLELSARLAL 179

Query: 230 FIFKCLALGDN---------TIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMP 280
              +   L D          T+P  G+ Q+    A  L    + LNTRV SI     +  
Sbjct: 180 LSLRLFDLEDGGVVFPGGGFTLPLGGLPQLI-AAALGLLGGRVRLNTRVRSITKSG-DGV 237

Query: 281 NVRLANGETLKSEIGVILAVEEPEA-DKLLRQ--PVKFQRKPAR------STVCLYFSAD 331
            V   +G T++++  VI+ V        L     P   Q           S V L F   
Sbjct: 238 TVTTVDGRTIEAD-AVIVTVPLGVLKRILFLPPLPAAKQEAIRNLGFGSVSKVFLEFETP 296

Query: 332 KDEIPVQEPVLFL--NGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNL 389
                     L +    S  G V +   ++      G L   ++  +   L  + + D  
Sbjct: 297 FWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGR--GVLLSYVLGDAAREL--EDLSDEE 352

Query: 390 TAE-VIRELSDWFGKSTVGSWRHLRTYRVRFAQ 421
             E V+R+L    G   V    +       +  
Sbjct: 353 LLEAVLRDLRKLLGPEDVPDPVN--FLVSDWHT 383

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 94/422 (22%), Positives = 153/422 (36%), Gaps = 80/422 (18%)

Query: 50  RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA 107
           ++ +IG G+AGL+AA RL   G      L EA D VGG +RT  +DGFL +RG   F+  
Sbjct: 2   KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR 61

Query: 108 YPEAQKLLDYNALNLQKF--YSGAK---VYYNGQFHTVADPFRHFWDSIKSLANPIGSVL 162
             E   L+    L L+    ++      +YY+G+ H +  P       I  L     S  
Sbjct: 62  KEEILDLI--KELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILG---IPLLLLS--SEA 114

Query: 163 DKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELE 222
                    IR      +Q     ++ + E +R   F + +++ F  P   GI+     +
Sbjct: 115 GLARALQEFIRPKSWEPKQ-----DISVGEFIRR-RFGEEVVERFIEPLLEGIYAGDADK 168

Query: 223 TSSRL-FDFIFKCLALGDNTI--------------------PANGICQIPNQIASKLPFE 261
            S+   F  + +      + +                       G+  +   +A KL  +
Sbjct: 169 LSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK 228

Query: 262 SILLNTRVLSIDFDEQNMPNVRLA--NGETLKSEIGVILAVEEPEADKLLRQPVKF---- 315
            I   T V  ID          +    GE + ++ GVI     PE  +LL          
Sbjct: 229 -IRTGTEVTKIDKK---GAGKTIVDVGGEKITAD-GVISTAPLPELARLLGDEAVSKAAK 283

Query: 316 QRKPARSTVCLYFSADKDEIPVQEPVLFLNGSG----------KGIVNNMFFATNVAPLY 365
           + +   S V +    D+ + P        +G G            I     F +N  P  
Sbjct: 284 ELQY-TSVVTVVVGLDEKDNP-----ALPDGYGLLIADDDPYILAIT----FHSNKWPHE 333

Query: 366 GPLDKALISVSLIGLFAD-----VMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFA 420
            P  K L+ V   G   D     + D+ L A V+ +L    G +    +  +   R ++A
Sbjct: 334 APEGKTLLRVE-FGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVF--VEVTRWKYA 390

Query: 421 QP 422
            P
Sbjct: 391 MP 392

Length = 444

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 53  VIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQ 112
           ++GAGL+GL AA  L  +G+  ++LE  D +GG   ++   G+  D G  IF T+YP  +
Sbjct: 1   IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERDPGYRHDYGAHIFHTSYPNVR 60

Query: 113 KLLDY 117
           +LLD 
Sbjct: 61  ELLDE 65

Length = 66

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 77/323 (23%), Positives = 118/323 (36%), Gaps = 28/323 (8%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG-FQIFITAYP 109
           V+VIGAGL GLAAA  L   G    +LE +D VGGR RT  +DGF  D G     +    
Sbjct: 6   VVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG 65

Query: 110 EAQKLLDYNA---LNLQKFYSGAKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKL 165
              + L       L+L       +V+  +G    V        + ++SL    G  L + 
Sbjct: 66  PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARY 125

Query: 166 LIGLTR-IRVLIKT--DEQILTSSEVP--IIELLRNIGFSDSIIDSFFRPFFGGIFFDKE 220
           L  L R   +L              VP     LLR +GFS +    FFR  FG       
Sbjct: 126 LRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRAL 185

Query: 221 LETSSR-----------LFDFIFKCLALGDNTIPANGICQIPNQIASKLPFE--SILLNT 267
           L  S+            L+  +      G    P  G+  + + +A         I    
Sbjct: 186 LAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGA 245

Query: 268 RVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLY 327
            V  I  +      VR ++GE ++++  V+   +     +LL +  + + + +       
Sbjct: 246 EVSQILVEGGKGVGVRTSDGENIEADA-VVSNADPALLARLLGEARRPRYRGSYLKSLSA 304

Query: 328 FSADK----DEIPVQEPVLFLNG 346
            S       D +P+      L G
Sbjct: 305 LSLYLGLKGDLLPLAHHTTILLG 327

Length = 487

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 77.2 bits (191), Expect = 3e-15
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 9/96 (9%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPF--VLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA 107
           +V +IG G+ GL+AA RLH +G      LLEASD +GG+++T   DGF ++ G + F+  
Sbjct: 2   KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLAR 61

Query: 108 YPEAQKLLDYNALNLQKFY---SGAK--VYYNGQFH 138
            P A  L+    L L+      +  +  +Y NG+ H
Sbjct: 62  KPSAPALV--KELGLEDELVANTTGQSYIYVNGKLH 95

Length = 451

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 60.3 bits (147), Expect = 6e-10
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 44/187 (23%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQ-IFIT-- 106
           ++ ++G G+AGLAAA RL  +G    + EA D +GG   +    G  ++R +  IF +  
Sbjct: 1   KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDE 60

Query: 107 AYPEAQKLLDYNALNLQKFYSGAKV---------YYNGQFHTVADP-----FRHFWDSIK 152
           A  E   LLD   L L       K+         Y +G+ + +  P     F H      
Sbjct: 61  ALLE---LLD--ELGL-----EDKLRWRETKTGYYVDGKLYPLGTPLELLRFPHL----- 105

Query: 153 SLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIE-LLRNIGFSDSIIDSFFRPF 211
                  S++DK  +GL  +      D + L   +VP  E L R  G  + + + F+ P 
Sbjct: 106 -------SLIDKFRLGLLTLLARRIKDWRAL--DKVPAEEWLRRWSG--EGVYEVFWEPL 154

Query: 212 FGGIFFD 218
               F D
Sbjct: 155 LESKFGD 161

Length = 434

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
            +VIGAG  GLA A RL + G P  ++E  D  GGR      DGF  D G    IT  PE
Sbjct: 1   AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTG-PTVIT-MPE 58

Query: 111 A 111
           A
Sbjct: 59  A 59

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 60.3 bits (147), Expect = 8e-10
 Identities = 29/67 (43%), Positives = 35/67 (52%)

Query: 48  KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA 107
           K  V++IGAG AGL AA  L  +G P  +LEA   VGG  RT +  G   D G   F + 
Sbjct: 4   KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSK 63

Query: 108 YPEAQKL 114
            PE   L
Sbjct: 64  SPEVMDL 70

Length = 479

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 27/50 (54%), Positives = 32/50 (64%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG 100
           VIVIG G+AG+AAA  LH       LLE+ D +GGRV TD   GF +D G
Sbjct: 3   VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMG 52

Length = 435

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLL-EASDAVGGRVRTDSVDGFLLDRGFQIFITAY 108
            V V+GAG++GLAAA  L S+    VL+ EA D VGG + + S DGF+ + G   F  + 
Sbjct: 14  DVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSD 73

Query: 109 PEAQKLLD 116
           PE    +D
Sbjct: 74  PELTSAVD 81

Length = 496

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAY 108
           RV + GAGLAGLAAA  L   G    L EA D +GG+V +    DG  ++ G  +F   Y
Sbjct: 2   RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCY 61

Query: 109 PEAQKLL 115
                LL
Sbjct: 62  YNLLTLL 68

Length = 485

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP 109
            VI++GAGLAGL+AA  L   G    +LEA D VGGR  T    G   D G Q     + 
Sbjct: 9   DVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHD 68

Query: 110 EAQKLLDY 117
               LL Y
Sbjct: 69  A---LLAY 73

Length = 450

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAY 108
           RV + GAGLAGL+ A  L   G   ++LEA D +GG+V      DG   + G  IF  AY
Sbjct: 1   RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY 60

Query: 109 PEAQKLL 115
           P   +LL
Sbjct: 61  PNMLQLL 67

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQ-I 103
           +    VI++GAG++G++AA  L   G    ++LEA+D +GGR+R  +  G  ++ G   +
Sbjct: 24  KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWV 83

Query: 104 FITAYPEAQKLLDY-NALNLQKFYS 127
                PE+  + +  N L L+ FYS
Sbjct: 84  EGVGGPESNPIWELANKLKLRTFYS 108

Length = 487

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 7   SSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKL-----ERKDRVIVIGAGLAGL 61
           SSS+L    T++         +Q+  S+S  ++  N  +     +RK ++IV+GAG AGL
Sbjct: 648 SSSVLDSPETLSVIKPELRNELQSVQSNSCIEMGGNHCVLCDSVDRK-KIIVVGAGPAGL 706

Query: 62  AAATRLHSQGRPFVLLEASDAVGGRVRTD 90
            AA  L  QG    +LEA   +GGRV TD
Sbjct: 707 TAARHLQRQGFSVTVLEARSRIGGRVYTD 735

Length = 1713

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAY 108
           +V++ GAGLAGL+ A  L   G   +LLEA D +GG+V      DG   + G  IF  AY
Sbjct: 95  KVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY 154

Query: 109 PEAQKL 114
           P  Q L
Sbjct: 155 PNVQNL 160

Length = 567

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 24/56 (42%), Positives = 31/56 (55%)

Query: 49  DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIF 104
             + ++GAG+AGLAAA  L   GR   + E    VGGR+ T  +DG   D G Q F
Sbjct: 2   PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYF 57

Length = 331

>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 44 KLERKDRVIVIGAGLAGLAAATRLHS---QGRPFVL--LEASDAVGGRVRTDSVDG 94
           + +K R+++IGAG+AGL AA +L++       F L  +E  D +GGR+ T    G
Sbjct: 1  MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG 56

Length = 539

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDGFLLD 98
           V +IGAG +GLAAA  L   G   FV+ E  D VGG  R +   G  LD
Sbjct: 10 DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLD 59

Length = 443

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 38  QLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG 94
           QL     +E  + V+V+GAGLAGL AA +L S G   V+LE     GGRV+T  + G
Sbjct: 229 QLRSFEGVEPAN-VVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG 284

Length = 808

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          V+VIG+GLAGLAAA      G    ++E     GG
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGG 36

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 48  KDRVIVIGAGLAGLAAATRLHSQGRP-----FVLLEASDAVGGRVRTDSVDGFLLDRGFQ 102
           K  V++IG G++GL AA  L  +  P       L+EASD VGG+++T   DG+L++RG  
Sbjct: 2   KKHVVIIGGGISGLCAAYYL-EKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPD 60

Query: 103 IFITAYPEAQKLL 115
            F+     A  L+
Sbjct: 61  SFLERKKSAPDLV 73

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD----GFLLDRGFQIFI 105
           ++ VIG+G++GL+AA  L  +     L EA   +GG   T + +    G  +D GF ++ 
Sbjct: 10  KIAVIGSGISGLSAAWLLSRRHD-VTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYN 68

Query: 106 -TAYPEAQKLLDY 117
              YP   +L   
Sbjct: 69  ERTYPNLTRLFKT 81

Length = 447

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 41  LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
           L    E    V+V+GAG  GL AA     +G+   L+EA+D +GG++ 
Sbjct: 129 LKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176

Length = 415

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89
           VI++GAGLAGLAAA +L S G   V+LE  +  GGRV T
Sbjct: 163 VIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201

Length = 738

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82
           V ++GAG AGLA A  L   G    LLE +  
Sbjct: 4  DVAIVGAGPAGLALALALARAGLDVTLLERAPR 36

Length = 387

>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 51 VIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGG 85
          V+V+G+G AGL+AA      G    VLLE    +GG
Sbjct: 2  VVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83
           +V++ G G+ GL  A  LH +G   V+ EA+  +
Sbjct: 1  MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35

Length = 413

>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 47  RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89
           R+ RV+V+G G AGL AA     +G    L E  D +GG+VR 
Sbjct: 378 RRKRVLVVGGGPAGLEAAATAARRGHRVTLFEREDRLGGQVRL 420

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 43  SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87
            K+E    V+VIG G+AG+ AA  L   G    L+E   ++GGR+
Sbjct: 119 IKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM 163

Length = 622

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/50 (46%), Positives = 26/50 (52%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG 100
           V+VIGAG+AGL AA  L  +G    LLE     GG   T    GF  D G
Sbjct: 4   VVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVG 53

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 48  KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG 94
           K  V+++GAGL+GLAAA +L   G    +LE     GGRV T  ++ 
Sbjct: 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA 230

Length = 881

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84
           V+V+GAG  GLA A  L  QG P VLL+  D + 
Sbjct: 25 PVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS 59

Length = 547

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           +V V+G+G AGLAAA +L   G    + E +D +GG
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAY 108
           +V ++GAGLAGL+ A  L   G    + E+   +GG+V +    DG  ++ G  +F   Y
Sbjct: 1   KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCY 60

Query: 109 PEAQKLLD 116
               +L+ 
Sbjct: 61  ANLFRLMK 68

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV 92
           V+++GAG AG +AA RL   G   ++LE     G +      
Sbjct: 5  DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGG 47

Length = 396

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLL--EASDAVGG 85
          VIV+GAGLAGL AA  L   G+  +LL  E    +GG
Sbjct: 7  VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43

Length = 549

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           +   +V VIGAG AGL AA RL  +G    + EA D  GG
Sbjct: 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84
           V+++G G+ GLAAA  L  QG    LLE +  +G
Sbjct: 6  PVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40

Length = 396

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           V++IG G+ GL+AA  L  +G    +LEA +A GG
Sbjct: 6  DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41

Length = 387

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           V+VIGAG AG  AA R    G    L+E  + +GG
Sbjct: 6  DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG 41

Length = 454

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 14/35 (40%), Positives = 16/35 (45%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          V+VIG G AGL AA      G    LL  +    G
Sbjct: 9  VVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43

Length = 562

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 31/148 (20%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR---------TDSVDGFLLDRG 100
            VIVIG G AGL AA     +GR  +L++    +G ++          T+SV+       
Sbjct: 2   DVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLGRKILISGGGRCNVTNSVE------- 54

Query: 101 FQIFITAYPEAQKLL-----DYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLA 155
              F++ YP     L      +   +   F+        G      D  R F  S K+  
Sbjct: 55  PDEFLSRYPGNPHFLKSALSRFTPWDFIAFFEE-----LGVPLKEEDHGRLFPVSDKAS- 108

Query: 156 NPIGSVLDKLLIGLTRIRVLIKTDEQIL 183
                ++D LL  L  + V I+T  ++L
Sbjct: 109 ----DIVDALLNELKELGVKIRTRTRVL 132

Length = 405

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 73/353 (20%), Positives = 126/353 (35%), Gaps = 31/353 (8%)

Query: 70  QGRPFVLLEASDAVGGRVR--TDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN--LQKF 125
            G    L EA   +GGR R   D   G  +D G  + + AY     LL        LQ  
Sbjct: 1   AGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGP 60

Query: 126 YSGAKVYYNGQFHTVADPFR---HFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQI 182
                 Y  G   +     R       +   L  P  S  DKL +    +  L +   + 
Sbjct: 61  RLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARA-LLALRRERFRA 119

Query: 183 LTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNT- 241
           L   +  + + L+  G S+ +I+  + P             S+ L   + +   L     
Sbjct: 120 LD--DTTVGDWLQAHGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAA 177

Query: 242 ----IPANGICQIPNQIASKLPFES----ILLNTRVLSIDFDEQNMPNVRLANGETLKSE 293
               +P   + ++  + A +   +S    + L TRV SI+ +   +  + LA  ETL ++
Sbjct: 178 SDLLLPRVPLSELFPEPARR-WLDSRGGEVRLGTRVRSIEANAGGIRALVLAGEETLPAD 236

Query: 294 IGVILAVEEPEADKLLRQPVKFQRKPA---RSTVCLYFSADKDEIPVQEPVLFLNGSGKG 350
             V+LAV    A  LL          A        ++   D+  + +  P++ L G   G
Sbjct: 237 -AVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDR-AVRLPAPMVGLVG---G 291

Query: 351 IVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGK 403
           +   +F   +   L G      + +S      D+  + L   ++ EL   F +
Sbjct: 292 LAQWLF---DRGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPR 341

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           RVIV+G GLAG +AA    S G   +LLE    +GG
Sbjct: 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446

Length = 1167

>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR------------TDSVDGFLLD 98
          V+V+G+G+AGL AA      GR  +++  +    G  R             DS +  + D
Sbjct: 19 VVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVAD 78

Length = 541

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 47  RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84
           +     +IG G+AG A A  L  +G    L EA +A  
Sbjct: 259 KARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296

Length = 662

>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 11/98 (11%)

Query: 29  QASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
           + +S +S    +  S+L+ K  ++++GAG AG++AA      G   V+LE     GG   
Sbjct: 42  EVTSGASKTSYTDPSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101

Query: 89  TDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFY 126
             S        G     T + +AQ + D N     KFY
Sbjct: 102 KAS-------SGMNASETKFQKAQGIADSN----DKFY 128

Length = 506

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89
           +++G+G AG   A RL   G   ++LEA    GG  R 
Sbjct: 10 YVIVGSGSAGSVLAARLSDAGLSVLVLEA----GGPDRR 44

Length = 542

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 48  KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
           + +V VIGAG AGLAAA  L   G P  + E  +  GG V+
Sbjct: 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579

Length = 1019

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81
           V+VIG G+ GL+ A  L  +G    LLE  D
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGD 32

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
           +V +IGAG AGL AA  L  +G    + +A++  GG +R
Sbjct: 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233

Length = 652

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 31/152 (20%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR---------TDSVDGFL 96
             +  VI+IG G AGL AA      GR  +L++    +G ++          T+S     
Sbjct: 1   MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA--- 57

Query: 97  LDRGFQIFITAYPEAQKLL-----DYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSI 151
                  F++  P     L      +   +   +  G      G      D  R F DS 
Sbjct: 58  ----PDEFLSRNPGNGHFLKSALARFTPEDFIDWVEG-----LGIALKEEDLGRMFPDSD 108

Query: 152 KSLANPIGSVLDKLLIGLTRIRVLIKTDEQIL 183
           K+       ++D LL  L  + V I+T  ++ 
Sbjct: 109 KA-----SPIVDALLKELEALGVTIRTRSRVS 135

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	100.0
PLN02612	567	phytoene desaturase	100.0
PRK07233	434	hypothetical protein; Provisional	100.0
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	100.0
PRK11883	451	protoporphyrinogen oxidase; Reviewed	100.0
PRK12416	463	protoporphyrinogen oxidase; Provisional	100.0
PLN02576	496	protoporphyrinogen oxidase	100.0
PLN02487	569	zeta-carotene desaturase	100.0
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	100.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	100.0
PRK07208	479	hypothetical protein; Provisional	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	100.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	100.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	100.0
PLN02268	435	probable polyamine oxidase	100.0
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.98
PLN02529	738	lysine-specific histone demethylase 1	99.97
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.97
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.96
PLN02568	539	polyamine oxidase	99.96
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.96
PLN02676	487	polyamine oxidase	99.96
PLN03000	881	amine oxidase	99.96
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.96
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.96
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.95
PLN02976	1713	amine oxidase	99.95
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.95
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.94
COG3349	485	Uncharacterized conserved protein [Function unknow	99.93
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.9
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.87
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.8
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.77
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.68
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.65
COG2081	408	Predicted flavoproteins [General function predicti	99.61
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	99.54
COG0579	429	Predicted dehydrogenase [General function predicti	99.53
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.5
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.48
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.48
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.47
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.46
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.44
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.41
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.36
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.34
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.32
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.29
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.28
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.27
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.25
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.25
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.24
PRK05257	494	malate:quinone oxidoreductase; Validated	99.22
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.21
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.19
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.19
PRK08274	466	tricarballylate dehydrogenase; Validated	99.18
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.18
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.18
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.17
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.15
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.15
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	99.13
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	99.13
PRK07236	386	hypothetical protein; Provisional	99.12
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.11
PLN02661	357	Putative thiazole synthesis	99.08
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.07
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.06
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.06
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.06
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.06
PRK10157	428	putative oxidoreductase FixC; Provisional	99.06
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.04
PRK06847	375	hypothetical protein; Provisional	99.04
PRK06184	502	hypothetical protein; Provisional	99.02
PRK07588	391	hypothetical protein; Provisional	99.02
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.01
PRK06753	373	hypothetical protein; Provisional	99.01
PRK06834	488	hypothetical protein; Provisional	99.0
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.99
PRK09126	392	hypothetical protein; Provisional	98.99
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.98
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.98
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.97
PRK07190	487	hypothetical protein; Provisional	98.97
PRK07045	388	putative monooxygenase; Reviewed	98.96
PRK05868	372	hypothetical protein; Validated	98.96
PRK07121	492	hypothetical protein; Validated	98.96
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.95
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.95
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.95
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.94
PRK08013	400	oxidoreductase; Provisional	98.94
PRK08163	396	salicylate hydroxylase; Provisional	98.94
PRK06116	450	glutathione reductase; Validated	98.94
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.91
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.91
PRK06175	433	L-aspartate oxidase; Provisional	98.91
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.91
PRK10015	429	oxidoreductase; Provisional	98.91
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.91
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.89
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.89
PLN02697	529	lycopene epsilon cyclase	98.89
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.88
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.88
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.87
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.87
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.86
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.86
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.86
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.86
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.86
PRK06185	407	hypothetical protein; Provisional	98.85
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.85
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.84
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.83
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.83
PRK12839	572	hypothetical protein; Provisional	98.83
PRK11445	351	putative oxidoreductase; Provisional	98.83
PLN02463	447	lycopene beta cyclase	98.83
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.82
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.82
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.82
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.81
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.8
PRK09897	534	hypothetical protein; Provisional	98.8
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.8
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.79
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.79
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.79
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.79
PRK06126	545	hypothetical protein; Provisional	98.79
PRK08244	493	hypothetical protein; Provisional	98.79
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	98.78
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.78
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.77
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.76
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.74
PRK06475	400	salicylate hydroxylase; Provisional	98.74
PRK08401	466	L-aspartate oxidase; Provisional	98.73
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.72
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.72
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.72
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.72
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.72
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.71
PRK07804	541	L-aspartate oxidase; Provisional	98.71
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.71
PLN02815	594	L-aspartate oxidase	98.7
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.7
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.7
PRK07538	413	hypothetical protein; Provisional	98.7
PRK08275	554	putative oxidoreductase; Provisional	98.69
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.69
PRK07395	553	L-aspartate oxidase; Provisional	98.69
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.69
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.68
PRK08071	510	L-aspartate oxidase; Provisional	98.67
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.67
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.66
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.64
PRK06996	398	hypothetical protein; Provisional	98.62
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.62
PRK07512	513	L-aspartate oxidase; Provisional	98.61
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.61
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.6
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.59
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.58
PTZ00058	561	glutathione reductase; Provisional	98.57
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.57
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.54
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.54
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.53
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.52
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.51
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.51
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.48
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.47
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.47
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.47
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.47
COG3573	552	Predicted oxidoreductase [General function predict	98.47
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.46
PRK06370	463	mercuric reductase; Validated	98.46
PRK02106	560	choline dehydrogenase; Validated	98.45
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.43
PRK12831	464	putative oxidoreductase; Provisional	98.42
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.42
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.41
PLN02852	491	ferredoxin-NADP+ reductase	98.41
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.4
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.4
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.4
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.39
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.39
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.37
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.37
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.36
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.36
PLN02985	514	squalene monooxygenase	98.36
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.36
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	98.35
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	98.35
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.35
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.34
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.31
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.31
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.3
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.29
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.29
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.28
PRK14694	468	putative mercuric reductase; Provisional	98.27
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.27
TIGR02053	463	MerA mercuric reductase. This model represents the	98.27
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.27
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.26
PRK08294	634	phenol 2-monooxygenase; Provisional	98.26
COG4716	587	Myosin-crossreactive antigen [Function unknown]	98.25
PTZ00188	506	adrenodoxin reductase; Provisional	98.25
PTZ00052	499	thioredoxin reductase; Provisional	98.24
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.24
PRK14727	479	putative mercuric reductase; Provisional	98.22
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.21
PLN02546	558	glutathione reductase	98.21
PRK13748	561	putative mercuric reductase; Provisional	98.21
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.2
PRK10262	321	thioredoxin reductase; Provisional	98.2
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.19
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.18
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.17
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.17
PTZ00367	567	squalene epoxidase; Provisional	98.17
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.15
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.15
PLN02507	499	glutathione reductase	98.15
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.14
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.13
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.13
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.12
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.11
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.1
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.1
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.1
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.09
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.08
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.07
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.05
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.04
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.01
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.0
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.0
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.99
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.99
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.95
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.94
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.94
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.91
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.91
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.9
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.9
KOG2853	509	consensus Possible oxidoreductase [General functio	97.88
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.87
PRK13984	604	putative oxidoreductase; Provisional	97.86
PRK09077	536	L-aspartate oxidase; Provisional	97.84
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.82
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.82
KOG2852	380	consensus Possible oxidoreductase [General functio	97.76
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.74
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.73
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.73
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.72
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.72
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.66
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.59
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.57
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.56
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.55
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.54
PRK07846	451	mycothione reductase; Reviewed	97.53
PLN02785	587	Protein HOTHEAD	97.5
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.5
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.46
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.42
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.39
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.38
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.37
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.36
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.35
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.32
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.32
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.28
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.23
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.14
PLN02507	499	glutathione reductase	97.14
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.12
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.12
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.1
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.98
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.77
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.68
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.57
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.54
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.49
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.48
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.48
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.41
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.37
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.33
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.32
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.26
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.16
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.1
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.92
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.88
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.87
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.84
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.8
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.74
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.74
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.73
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.57
TIGR02053	463	MerA mercuric reductase. This model represents the	95.55
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.46
PRK06370	463	mercuric reductase; Validated	95.45
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.42
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.41
PRK07846	451	mycothione reductase; Reviewed	95.34
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.32
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.27
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.27
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.25
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.24
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.23
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.23
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.23
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.2
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.17
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.16
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.15
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.11
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.01
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.98
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.98
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.98
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.95
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.95
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.94
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.94
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	94.93
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.63
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.57
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.55
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.49
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.47
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.47
PTZ00058	561	glutathione reductase; Provisional	94.46
PRK04148	134	hypothetical protein; Provisional	94.45
KOG2755	334	consensus Oxidoreductase [General function predict	94.45
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.39
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	94.38
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.37
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.35
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.3
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.23
PRK06116	450	glutathione reductase; Validated	94.13
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.09
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.09
PRK10262	321	thioredoxin reductase; Provisional	94.03
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	94.0
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.99
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.92
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.92
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.9
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.85
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.82
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.78
PLN02572	442	UDP-sulfoquinovose synthase	93.73
PLN02546	558	glutathione reductase	93.7
PRK12831	464	putative oxidoreductase; Provisional	93.7
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.69
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.67
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	93.67
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.66
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.6
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.59
PRK14694	468	putative mercuric reductase; Provisional	93.58
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.56
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.53
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.46
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	93.45
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.44
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.44
PRK13748	561	putative mercuric reductase; Provisional	93.43
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	93.37
PTZ00052	499	thioredoxin reductase; Provisional	93.34
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.32
PRK14727	479	putative mercuric reductase; Provisional	93.3
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.26
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.23
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.18
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.17
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.13
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.1
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.1
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.02
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.99
PTZ00082	321	L-lactate dehydrogenase; Provisional	92.98
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.92
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.83
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.74
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.72
PRK07417	279	arogenate dehydrogenase; Reviewed	92.72
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.67
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	92.59
PRK06223	307	malate dehydrogenase; Reviewed	92.53
PRK08306	296	dipicolinate synthase subunit A; Reviewed	92.44
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.44
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.44
PLN00016	378	RNA-binding protein; Provisional	92.27
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.25
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.21
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	92.15
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.14
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.14
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.12
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	92.12
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	92.04
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.04
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.03
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.91
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	91.9
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	91.82
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.69
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	91.69
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.67
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.65
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.64
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.6
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.59
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	91.56
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.54
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.5
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.48
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	91.44
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.26
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.26
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	91.19
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.91
PTZ00117	319	malate dehydrogenase; Provisional	90.87
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	90.85
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.82
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.77
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.74
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.7
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	90.68
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	90.64
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	90.58
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.57
PRK12548	289	shikimate 5-dehydrogenase; Provisional	90.56
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	90.54
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.51
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	90.37
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	90.25
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	90.25
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	90.21
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.21
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	90.13
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	89.98
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	89.94
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.81
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.71
PLN02602	350	lactate dehydrogenase	89.58
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.55
PLN02494	477	adenosylhomocysteinase	89.53
PRK05866	293	short chain dehydrogenase; Provisional	89.52
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.5
PRK12779	944	putative bifunctional glutamate synthase subunit b	89.45
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.43
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	89.32
PLN02712	667	arogenate dehydrogenase	89.2
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.19
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.15
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	89.1
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	89.04
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	89.03

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=100.00  E-value=8.2e-39  Score=304.95  Aligned_cols=378  Identities=22%  Similarity=0.313  Sum_probs=284.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee--
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF--  125 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~--  125 (445)
                      .|+|||||++||+|||+|+|++  .+|+|||+.+++||.++|+..+|+.+|.|+|.|....+.+.++++++|++....  
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~~   81 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLWN   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhccC
Confidence            6999999999999999999999  999999999999999999999999999999988766678899999999975543  


Q ss_pred             -cCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352          126 -YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII  204 (445)
Q Consensus       126 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~  204 (445)
                       ....+++.+|++++++.+.-..+..        ....+..... ..+..+. ....+...++.++++|+++ .++++++
T Consensus        82 ~~~~~~i~~~gkl~p~P~~~i~~ip~--------~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~sv~~f~r~-~fG~ev~  150 (444)
T COG1232          82 STARKYIYYDGKLHPIPTPTILGIPL--------LLLSSEAGLA-RALQEFI-RPKSWEPKQDISVGEFIRR-RFGEEVV  150 (444)
T ss_pred             CcccceEeeCCcEEECCccceeecCC--------ccccchhHHH-HHHHhhh-cccCCCCCCCcCHHHHHHH-HHhHHHH
Confidence             3334688999999987654211110        0000000000 0001111 1111233568899999987 5999999


Q ss_pred             HHhhhhhhcccccCCccchHHHHHH-HHHH-----------Hhh---------cCCCccccCccccHHHHHHhcCCCCcE
Q 042352          205 DSFFRPFFGGIFFDKELETSSRLFD-FIFK-----------CLA---------LGDNTIPANGICQIPNQIASKLPFESI  263 (445)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~---------~g~~~~~~gG~~~l~~~l~~~l~g~~i  263 (445)
                      +.++.|++.+.|+++.+++|+.... ....           ...         .+...++.||+++++++|++.+ ..+|
T Consensus       151 ~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l-~~~i  229 (444)
T COG1232         151 ERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKL-EAKI  229 (444)
T ss_pred             HHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHh-hhce
Confidence            9999999999999999999887221 1110           000         1235678999999999999999 4569


Q ss_pred             EeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCCC--CC
Q 042352          264 LLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEIP--VQ  338 (445)
Q Consensus       264 ~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~~--~~  338 (445)
                      ++|++|++|.++.++ +.+.+.+|+++.+| .||+|+|++.+.+++++..   ...++.+.+..++.++++++..+  .+
T Consensus       230 ~~~~~V~~i~~~~~~-~~~~~~~g~~~~~D-~VI~t~p~~~l~~ll~~~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~  307 (444)
T COG1232         230 RTGTEVTKIDKKGAG-KTIVDVGGEKITAD-GVISTAPLPELARLLGDEAVSKAAKELQYTSVVTVVVGLDEKDNPALPD  307 (444)
T ss_pred             eecceeeEEEEcCCc-cEEEEcCCceEEcc-eEEEcCCHHHHHHHcCCcchhhhhhhccccceEEEEEEeccccccCCCC
Confidence            999999999999544 77888889889998 7999999999999999943   45678888999999999886322  23


Q ss_pred             CCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCCC----CCCCChHHHHHHHHHHHhHhCCCcCCCceEeeE
Q 042352          339 EPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLF----ADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRT  414 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~----~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~  414 (445)
                      ..++.+++.... +..++|+|++.|...|+|++++.+.+....    ..+++||+++.++++|.++++....+.|  ..+
T Consensus       308 ~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~--~~v  384 (444)
T COG1232         308 GYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVF--VEV  384 (444)
T ss_pred             ceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchhh--eee
Confidence            334444554322 889999999999999999999998875442    3467999999999999999998776665  467


Q ss_pred             eecCCCCCCCCCCCCCC----CCCcccCCCCeee
Q 042352          415 YRVRFAQPNQSPPTDLI----KNPKSEFSLAVYL  444 (445)
Q Consensus       415 ~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~  444 (445)
                      +|+.+++|...+|....    |....+..||+++
T Consensus       385 ~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~  418 (444)
T COG1232         385 TRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKS  418 (444)
T ss_pred             eeccccCCccchhHHHHHHHHHHhhccccCCeEE
Confidence            88889999999988533    4343333466654

>PLN02612 phytoene desaturase

Probab=100.00  E-value=9.5e-38  Score=314.55  Aligned_cols=394  Identities=18%  Similarity=0.272  Sum_probs=272.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCeeecccccchhccChhHHHhhcccCCccee-
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK-  124 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~-  124 (445)
                      ...||+|||||++||+||++|+++|++|+|+|+++++||++.++. .+|+.+|.|.|++.+.++++.++++++|+.... 
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~  171 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQ  171 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccce
Confidence            457999999999999999999999999999999999999999986 478999999999999999999999999985432 


Q ss_pred             ecCCcEEE-e---CCeeEe--ccCCccchHHHHHhhc--CCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH
Q 042352          125 FYSGAKVY-Y---NGQFHT--VADPFRHFWDSIKSLA--NPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN  196 (445)
Q Consensus       125 ~~~~~~~~-~---~g~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~  196 (445)
                      ......++ .   .+.+..  +++..+.+++....+.  .+...+.+++................+..+++.|+.+|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~  251 (567)
T PLN02612        172 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRK  251 (567)
T ss_pred             ecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHh
Confidence            12222221 2   133332  2221333333333322  23345566655433221111111222345678999999999


Q ss_pred             cCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh-h--cC-CCccccCcc-ccHHHHHHhcCC--CCcEEeCcee
Q 042352          197 IGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL-A--LG-DNTIPANGI-CQIPNQIASKLP--FESILLNTRV  269 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~g-~~~~~~gG~-~~l~~~l~~~l~--g~~i~~n~~V  269 (445)
                      .++++.+.+.++.+++.+++..++.+.+.......+..+ .  .+ ...++.|+. ..+.++|++.+.  |++|++|++|
T Consensus       252 ~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V  331 (567)
T PLN02612        252 QGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRI  331 (567)
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCee
Confidence            999999888899999988888887777765443322222 1  11 234555554 567777777653  9999999999


Q ss_pred             eEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhHHhhhcCCC----c---ccCCCCCcceEEEEEeecCCCCCCCCCe
Q 042352          270 LSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEADKLLRQP----V---KFQRKPARSTVCLYFSADKDEIPVQEPV  341 (445)
Q Consensus       270 ~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p----~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~  341 (445)
                      ++|+.++++ +++|++.+|+++++| +||+|+|++.+.+|+++.    +   .+.+..+.+++++++.|+++++....+.
T Consensus       332 ~~I~~~~~g~v~~v~~~~G~~~~ad-~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~  410 (567)
T PLN02612        332 KKIELNDDGTVKHFLLTNGSVVEGD-VYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHL  410 (567)
T ss_pred             eEEEECCCCcEEEEEECCCcEEECC-EEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCce
Confidence            999987555 456888889889998 799999999998888762    1   2345678889999999999974222233


Q ss_pred             EEecCCCCcceEEEEe-ecccCCCCCCCCceEEEEEec--CCCCCCCChHHHHHHHHHHHhHhCCCcCC-----CceEee
Q 042352          342 LFLNGSGKGIVNNMFF-ATNVAPLYGPLDKALISVSLI--GLFADVMDDNLTAEVIRELSDWFGKSTVG-----SWRHLR  413 (445)
Q Consensus       342 ~~~~~~~~~~~~~~~~-~s~~~p~~~p~g~~~l~~~~~--~~~~~~~~~e~~~~~~~~l~~~~~~~~~~-----~~~~~~  413 (445)
                      + +....  .. ...+ .|...+.+.+++++++.+.+.  ..|.+++++++++.++++|+++||.....     ......
T Consensus       411 ~-~~~~~--~~-~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~  486 (567)
T PLN02612        411 L-FSRSP--LL-SVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYH  486 (567)
T ss_pred             e-ecCCC--Cc-eeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEE
Confidence            2 22221  11 1111 133334556667777665543  24677899999999999999999975321     122233


Q ss_pred             EeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352          414 TYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC  445 (445)
Q Consensus       414 ~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~  445 (445)
                      ..+.+++.+...||....||..+||++|||+|
T Consensus       487 ~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lA  518 (567)
T PLN02612        487 VVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLA  518 (567)
T ss_pred             EeccCCceEEeCCCCcccCccccCccCCEEEe
Confidence            45566666677888888899999999999997

>PRK07233 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=308.34  Aligned_cols=381  Identities=22%  Similarity=0.269  Sum_probs=275.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcce--eecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQ--KFYS  127 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~--~~~~  127 (445)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++.++..+|+.+|.|+|++...++.+.++++++|+...  ....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~   80 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRET   80 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCceeeccC
Confidence            59999999999999999999999999999999999999999999999999999998888999999999998533  2233


Q ss_pred             CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHh
Q 042352          128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSF  207 (445)
Q Consensus       128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~  207 (445)
                      ...++++|....+.+    +...   +..+.....++.......+...  ........++.++.+|+++. .+++..+.+
T Consensus        81 ~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~~~~~~~~~  150 (434)
T PRK07233         81 KTGYYVDGKLYPLGT----PLEL---LRFPHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-SGEGVYEVF  150 (434)
T ss_pred             ceEEEECCeEecCCC----HHHH---HcCCCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-cCHHHHHHH
Confidence            344556665443322    1111   1112223334443322222111  01112345678999999885 577888899


Q ss_pred             hhhhhcccccCCccchHHHHHHHHHHHh--h-----cCCCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCC
Q 042352          208 FRPFFGGIFFDKELETSSRLFDFIFKCL--A-----LGDNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQN  278 (445)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~  278 (445)
                      +++++...|+.++.++++......+...  .     .....+|.||++.++++|.+.++  |++|++|++|++|+.++++
T Consensus       151 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~  230 (434)
T PRK07233        151 WEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG  230 (434)
T ss_pred             HHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc
Confidence            9999999999888888775432222111  1     12367899999999999999885  8899999999999988766


Q ss_pred             cCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceE
Q 042352          279 MPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVN  353 (445)
Q Consensus       279 ~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (445)
                      ++.+. .+|++++++ +||+|+|+..+.+|+++ +.    ....+.+.+..++++.++++..+  ..++...+. ...+.
T Consensus       231 ~~~~~-~~~~~~~ad-~vI~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~-~~~~~  305 (434)
T PRK07233        231 VTGVE-VDGEEEDFD-AVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD--YYWLNINDP-GAPFG  305 (434)
T ss_pred             eEEEE-eCCceEECC-EEEECCCHHHHHhhcCCCcHHHHhhhcccCccceEEEEEEecCCCCC--CceeeecCC-CCCcc
Confidence            43344 567789998 79999999999999866 22    34567788999999999987522  222222221 12345


Q ss_pred             EEEeecccCCCCCCCCceEEEEE--ecCC--CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCC
Q 042352          354 NMFFATNVAPLYGPLDKALISVS--LIGL--FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTD  429 (445)
Q Consensus       354 ~~~~~s~~~p~~~p~g~~~l~~~--~~~~--~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  429 (445)
                      .+++.++.+|...|+|++++.+.  ....  ...++++++++.++++|++++|+.....+......+.+++.+.+.||..
T Consensus       306 ~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~  385 (434)
T PRK07233        306 GVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYL  385 (434)
T ss_pred             eEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchh
Confidence            56667777887777777765332  2221  2356789999999999999999764444555667788899999989877


Q ss_pred             CCCCCcccCCCCeeeC
Q 042352          430 LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       430 ~~~~~~~t~~~g~~~~  445 (445)
                      ..+|...++++|||+|
T Consensus       386 ~~~~~~~~~~~~l~~a  401 (434)
T PRK07233        386 DKIPPYDTPIEGLYLA  401 (434)
T ss_pred             hcCCCcccCcCCEEEe
Confidence            7778888899999997

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=100.00  E-value=8.9e-38  Score=311.59  Aligned_cols=380  Identities=22%  Similarity=0.317  Sum_probs=277.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQ  123 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~  123 (445)
                      +.||+|||||++||+||+.|+++    |++|+|+|+++++||+++|.+.+|+.+|.|+|++...++.+.++++++|+...
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~   81 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV   81 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence            36899999999999999999999    99999999999999999999999999999999999988889999999998643


Q ss_pred             ee---cCCcEEEeC-CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352          124 KF---YSGAKVYYN-GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF  199 (445)
Q Consensus       124 ~~---~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~  199 (445)
                      ..   .....++.+ |+...++..   ..   ..+......+.+++...+..+..   .    ....+.|+.+|+++. +
T Consensus        82 ~~~~~~~~~~~~~~~g~~~~~p~~---~~---~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~d~s~~e~l~~~-~  147 (462)
T TIGR00562        82 LVSDATGQRYVLVNRGKLMPVPTK---IA---PFVKTGLFSLGGKLRAGMDFIRP---A----SPGKDESVEEFVRRR-F  147 (462)
T ss_pred             cccCCCCceEEEECCCceecCCCC---hH---HHhcCCCCCchhhHHhhhhhccC---C----CCCCCcCHHHHHHHh-c
Confidence            32   222344555 666655422   11   11222233334444333211110   0    122358999999874 8


Q ss_pred             CHHHHHHhhhhhhcccccCCccchHHHHHH-----HH------H-HHh-h---------------cCC-CccccCccccH
Q 042352          200 SDSIIDSFFRPFFGGIFFDKELETSSRLFD-----FI------F-KCL-A---------------LGD-NTIPANGICQI  250 (445)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~-~~~-~---------------~g~-~~~~~gG~~~l  250 (445)
                      ++++.+.++.|++.+.|+.++.++++....     ..      . ... .               .+. ...+.||++.|
T Consensus       148 g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l  227 (462)
T TIGR00562       148 GDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETL  227 (462)
T ss_pred             CHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHH
Confidence            899999999999999999988877765211     10      0 000 0               111 45689999999


Q ss_pred             HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-Cc----ccCCCCCcceEE
Q 042352          251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-PV----KFQRKPARSTVC  325 (445)
Q Consensus       251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~----~~~~~~~~~~~~  325 (445)
                      +++|++.+..++|++|++|++|+.++++ +.|++++|+++++| +||+|+|+..+.+|+++ |.    .+..+.+.++.+
T Consensus       228 ~~~l~~~l~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad-~VI~t~P~~~~~~ll~~~~~~~~~~l~~l~~~~~~~  305 (462)
T TIGR00562       228 PEEIEKRLKLTKVYKGTKVTKLSHRGSN-YTLELDNGVTVETD-SVVVTAPHKAAAGLLSELSNSASSHLDKIHSPPVAN  305 (462)
T ss_pred             HHHHHHHhccCeEEcCCeEEEEEecCCc-EEEEECCCcEEEcC-EEEECCCHHHHHHHhcccCHHHHHHHhcCCCCceEE
Confidence            9999999854799999999999988765 67888888889998 79999999999999977 33    466788999999


Q ss_pred             EEEeecCCCCCCC-CCeEEecCCC-CcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHh
Q 042352          326 LYFSADKDEIPVQ-EPVLFLNGSG-KGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSD  399 (445)
Q Consensus       326 v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~  399 (445)
                      +.+.|+++++... ..+.++.... ...+..+++.|+..|..+|+|..++.+++.+.    +.+++++++++.++++|++
T Consensus       306 v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~  385 (462)
T TIGR00562       306 VNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKK  385 (462)
T ss_pred             EEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHH
Confidence            9999987754321 2333443332 22456788888888988998988887776543    3457899999999999999


Q ss_pred             HhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352          400 WFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC  445 (445)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~  445 (445)
                      +++....  .....++|+.++.|.+.+|....    ++...++-||||+|
T Consensus       386 ~~gi~~~--p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~  433 (462)
T TIGR00562       386 VLNINNE--PEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLT  433 (462)
T ss_pred             HhCCCCC--CcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEe
Confidence            9986432  33356788889999999987432    22222345799986

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=100.00  E-value=2.2e-37  Score=308.17  Aligned_cols=384  Identities=22%  Similarity=0.297  Sum_probs=274.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee--
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF--  125 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~--  125 (445)
                      +|+|||||++||+||+.|+++|  ++|+|+|+++++||++++.+.+|+.+|.|+|++...++.+.++++++|+.....  
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~   81 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDELVAN   81 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccceecC
Confidence            6999999999999999999987  899999999999999999999999999999988887888999999999864322  


Q ss_pred             -cCCcEEEeCCeeEeccCCc--cchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHH
Q 042352          126 -YSGAKVYYNGQFHTVADPF--RHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS  202 (445)
Q Consensus       126 -~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~  202 (445)
                       .....++.+|++..++...  ..+......+........+++......      ........++.|+.+|+++ .+++.
T Consensus        82 ~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~l~~-~~~~~  154 (451)
T PRK11883         82 TTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAFFRR-RFGDE  154 (451)
T ss_pred             CCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHHHHH-hccHH
Confidence             2334666778776654321  001111111112222222222211110      0011122457899999986 58899


Q ss_pred             HHHHhhhhhhcccccCCccchHHHHHHH-HH----------HH----h------hcCCCccccCccccHHHHHHhcCCCC
Q 042352          203 IIDSFFRPFFGGIFFDKELETSSRLFDF-IF----------KC----L------ALGDNTIPANGICQIPNQIASKLPFE  261 (445)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~----~------~~g~~~~~~gG~~~l~~~l~~~l~g~  261 (445)
                      ..+.++.|++.++|+.++.++++..... +.          ..    .      ....++++.||++.++++|++.++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~  234 (451)
T PRK11883        155 VVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG  234 (451)
T ss_pred             HHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC
Confidence            9999999999999999888877643210 00          00    0      01234578999999999999998522


Q ss_pred             cEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCCC-C
Q 042352          262 SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEIP-V  337 (445)
Q Consensus       262 ~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~~-~  337 (445)
                      +|++|++|++|+.++++ +.|.+.+|+++.+| +||+|+|+..+.+++.+|.   ......+.+..++++.|++++.. .
T Consensus       235 ~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d-~vI~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~  312 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDG-YEIVLSNGGEIEAD-AVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESATNLP  312 (451)
T ss_pred             eEEeCCEEEEEEEcCCe-EEEEECCCCEEEcC-EEEECCCHHHHHHhccChhHHHHHhCCCCCceEEEEEEeccccCCCC
Confidence            89999999999988765 67888899889998 7999999999999887754   45667888999999999988422 2


Q ss_pred             CCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCcCCCceEee
Q 042352          338 QEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLR  413 (445)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~  413 (445)
                      ..+.++++......+..+.+++...|..+|+|..++..++...    ..+++++++++.++++|++++|...  ...+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~  390 (451)
T PRK11883        313 DGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITG--DPEFTI  390 (451)
T ss_pred             CceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC--CceEEE
Confidence            2233444433333466777888888888888887777655321    3457899999999999999998533  233456


Q ss_pred             EeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352          414 TYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC  445 (445)
Q Consensus       414 ~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~  445 (445)
                      ..++.+++|...||....    ++...+ ++|||+|
T Consensus       391 ~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~a  425 (451)
T PRK11883        391 VQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVA  425 (451)
T ss_pred             EeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEE
Confidence            677888889888886422    223222 6789886

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=100.00  E-value=4.5e-37  Score=306.06  Aligned_cols=386  Identities=13%  Similarity=0.196  Sum_probs=268.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNL  122 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~  122 (445)
                      .+|+|||||++||+||+.|++.      |++|+|+|+++++||+++|.+.+|+.+|.|+|++...++.+.++++++|++.
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~   81 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE   81 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence            4799999999999999999986      3799999999999999999999999999999999888889999999999875


Q ss_pred             eee---cCCcEEEeCCeeEeccCCcc--chHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHc
Q 042352          123 QKF---YSGAKVYYNGQFHTVADPFR--HFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNI  197 (445)
Q Consensus       123 ~~~---~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~  197 (445)
                      ...   .....++.++....++....  .+......+.....++..++....    ......  ....++.|+.+|+++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~sv~~~l~~-  154 (463)
T PRK12416         82 EMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALK----DFITKN--KEFTKDTSLALFLES-  154 (463)
T ss_pred             ceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhh----hhccCC--CCCCCCCCHHHHHHH-
Confidence            432   12345556676665543210  011111111122222222221111    111110  012357899999987 


Q ss_pred             CCCHHHHHHhhhhhhcccccCCccchHHHH-HHHH----------HHHh----h----c--CCCccccCccccHHHHHHh
Q 042352          198 GFSDSIIDSFFRPFFGGIFFDKELETSSRL-FDFI----------FKCL----A----L--GDNTIPANGICQIPNQIAS  256 (445)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~----~----~--g~~~~~~gG~~~l~~~l~~  256 (445)
                      .++++..+.++.|++.++|+.++.+.+... +..+          ...+    .    .  ...+++.||++.|+++|++
T Consensus       155 ~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~  234 (463)
T PRK12416        155 FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEE  234 (463)
T ss_pred             hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHH
Confidence            588999999999999999999888876532 1111          0000    0    1  1245789999999999999


Q ss_pred             cCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCC
Q 042352          257 KLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKD  333 (445)
Q Consensus       257 ~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~  333 (445)
                      .+++++|++|++|++|+.++++ +.|++.+|+++.++ +||+|+|++.+.+|+.+|+   ...++.+.++.++++.|+++
T Consensus       235 ~l~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad-~VI~a~p~~~~~~ll~~~~l~~~~~~~~~~~~~~v~l~~~~~  312 (463)
T PRK12416        235 VLTETVVKKGAVTTAVSKQGDR-YEISFANHESIQAD-YVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDIL  312 (463)
T ss_pred             hcccccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeC-EEEECCCHHHHHhhcCCcchhHHHhcCCCCceEEEEEEechh
Confidence            9865689999999999988766 67888888888998 7999999999999998865   45567788999999999976


Q ss_pred             CCCCCCC-eEEe-cCCCCcceEEEEeecccCCCCCCCCceEEEEEecC--C----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352          334 EIPVQEP-VLFL-NGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG--L----FADVMDDNLTAEVIRELSDWFGKST  405 (445)
Q Consensus       334 ~~~~~~~-~~~~-~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~--~----~~~~~~~e~~~~~~~~l~~~~~~~~  405 (445)
                      ++.++.. +.++ +......+..+.+.|+..+...|++..++.+++.+  .    +.+++++++.+.++++|+++||...
T Consensus       313 ~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~  392 (463)
T PRK12416        313 DEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG  392 (463)
T ss_pred             hcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC
Confidence            5433322 2233 32222235567788887777667666666655431  2    4567899999999999999998643


Q ss_pred             CCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352          406 VGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC  445 (445)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~  445 (445)
                      .+.  +..+.++.++.|...+|....    ++.-..+.|||++|
T Consensus       393 ~p~--~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~a  434 (463)
T PRK12416        393 EPE--VVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLA  434 (463)
T ss_pred             Cce--EEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEe
Confidence            222  345666777777777765211    11222335788886

>PLN02576 protoporphyrinogen oxidase

Probab=100.00  E-value=2.2e-36  Score=303.87  Aligned_cols=386  Identities=20%  Similarity=0.239  Sum_probs=272.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee-
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK-  124 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~-  124 (445)
                      .++||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+|+.+|.|+|++...++.+..++++ ++.-.. 
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~~   89 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLV   89 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CChhhee
Confidence            457999999999999999999999 99999999999999999999999999999999998888888888877 664221 


Q ss_pred             -ec--CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCH
Q 042352          125 -FY--SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSD  201 (445)
Q Consensus       125 -~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  201 (445)
                       ..  ....++.+|+...++...      ...+......+.+++......+...  ..  ....++.|+.+|+++ .+++
T Consensus        90 ~~~~~~~~~~~~~g~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~sv~~~l~~-~~g~  158 (496)
T PLN02576         90 FPDPQAPRYVVWNGKLRPLPSNP------IDLPTFDLLSAPGKIRAGLGAFGWK--RP--PPPGREESVGEFVRR-HLGD  158 (496)
T ss_pred             cCCCCceEEEEECCEEEEcCCCh------HHhcCcCcCChhHHHHHhHHHhhcc--CC--CCCCCCCcHHHHHHH-hcCH
Confidence             11  223556688777664321      1111223334444443322222110  00  012457899999987 4899


Q ss_pred             HHHHHhhhhhhcccccCCccchHHHHHH-HHH---------------HHh------------------hcCCCccccCcc
Q 042352          202 SIIDSFFRPFFGGIFFDKELETSSRLFD-FIF---------------KCL------------------ALGDNTIPANGI  247 (445)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~------------------~~g~~~~~~gG~  247 (445)
                      +.++.+++|++.++|+.++.++++.... .+.               ...                  .....+.+.||+
T Consensus       159 ~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~  238 (496)
T PLN02576        159 EVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGL  238 (496)
T ss_pred             HHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchH
Confidence            9999999999999999999888775321 100               000                  001236779999


Q ss_pred             ccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeC--CCc-eEEeccEEEEcCChhHHhhhcCC--Cc---ccCCCC
Q 042352          248 CQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLA--NGE-TLKSEIGVILAVEEPEADKLLRQ--PV---KFQRKP  319 (445)
Q Consensus       248 ~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~--~g~-~i~a~~~VV~a~~~~~~~~ll~~--p~---~~~~~~  319 (445)
                      +.|+++|++.++.++|++|++|++|+..+++.+.|++.  +|+ ++++| +||+|+|+..+..|+.+  |+   .+..+.
T Consensus       239 ~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad-~VI~a~P~~~l~~ll~~~~~~~~~~l~~~~  317 (496)
T PLN02576        239 QTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAK-AVVMTAPLYVVSEMLRPKSPAAADALPEFY  317 (496)
T ss_pred             HHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeC-EEEECCCHHHHHHHhcccCHHHHHHhccCC
Confidence            99999999988326899999999999887653445443  553 68998 79999999999999886  22   456788


Q ss_pred             CcceEEEEEeecCCCCCC------C-CCeEEecCCCCc-ceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCCh
Q 042352          320 ARSTVCLYFSADKDEIPV------Q-EPVLFLNGSGKG-IVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDD  387 (445)
Q Consensus       320 ~~~~~~v~~~~~~~~~~~------~-~~~~~~~~~~~~-~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~  387 (445)
                      +.++.++++.|++++|..      + ..+.++.....+ ...++.+.|...|.+.|++..++..+..+.    +.+++++
T Consensus       318 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~e  397 (496)
T PLN02576        318 YPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEE  397 (496)
T ss_pred             CCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHH
Confidence            999999999999876432      1 122222222112 345678888888888888877776665442    4567899


Q ss_pred             HHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCccc---CC--CCeeeC
Q 042352          388 NLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSE---FS--LAVYLC  445 (445)
Q Consensus       388 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t---~~--~g~~~~  445 (445)
                      ++++.++++|++++|......+.....+++.++.|...+|.....+..+.   ..  +|||+|
T Consensus       398 e~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~a  460 (496)
T PLN02576        398 ELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLG  460 (496)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEe
Confidence            99999999999999964423344456778889999999988532111111   12  789986

>PLN02487 zeta-carotene desaturase

Probab=100.00  E-value=1.9e-35  Score=294.17  Aligned_cols=395  Identities=16%  Similarity=0.208  Sum_probs=278.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCeeecccccchhccChhHHHhhcccCCcceeec
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFY  126 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~  126 (445)
                      ..+|+|||||++||++|+.|+++|++|+|+|+++.+||++.++. .+|+.+|.|.|++.+.++++.++++++|++-....
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~  154 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLV  154 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccc
Confidence            46999999999999999999999999999999999999999985 57899999999999989999999999998644322


Q ss_pred             CC-cEEE--eCCeeEecc--CCccchHHHHHhh-cCCccchHHHHHHhhhhhhh-hhc-------chHHHhcCCCCcHHH
Q 042352          127 SG-AKVY--YNGQFHTVA--DPFRHFWDSIKSL-ANPIGSVLDKLLIGLTRIRV-LIK-------TDEQILTSSEVPIIE  192 (445)
Q Consensus       127 ~~-~~~~--~~g~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~s~~~  192 (445)
                      +. ...+  .+|....+.  -++..++.....+ ..+...+.+++......... ...       ....+...++.|+.+
T Consensus       155 ~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~  234 (569)
T PLN02487        155 KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSD  234 (569)
T ss_pred             cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCcHHH
Confidence            22 1112  234433222  1233444333333 34445666666543222110 000       012233456799999


Q ss_pred             HHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhh-c---CCCccccCcccc-HHHHHHhcCC--CCcEEe
Q 042352          193 LLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLA-L---GDNTIPANGICQ-IPNQIASKLP--FESILL  265 (445)
Q Consensus       193 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---g~~~~~~gG~~~-l~~~l~~~l~--g~~i~~  265 (445)
                      |+++++.+++.++.+++|++.+.+..+.++.|+......+..+. .   +...++.||... |++.+++.|+  |++|++
T Consensus       235 ~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l  314 (569)
T PLN02487        235 WFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHL  314 (569)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEe
Confidence            99998877779999999999999999999999886665554432 1   236789999995 9999999886  999999


Q ss_pred             CceeeEEEecC--CC---cCeEEe---CCCceEEeccEEEEcCChhHHhhhcCCC--c-----ccCCCCCcceEEEEEee
Q 042352          266 NTRVLSIDFDE--QN---MPNVRL---ANGETLKSEIGVILAVEEPEADKLLRQP--V-----KFQRKPARSTVCLYFSA  330 (445)
Q Consensus       266 n~~V~~I~~~~--~~---~~~V~~---~~g~~i~a~~~VV~a~~~~~~~~ll~~p--~-----~~~~~~~~~~~~v~~~~  330 (445)
                      +++|++|+.++  ++   +++|++   .+++++.+| +||+|+|++.+.+|+++.  .     .+..+.+.+++.+++.|
T Consensus       315 ~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~  393 (569)
T PLN02487        315 RWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRY  393 (569)
T ss_pred             CCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEe
Confidence            99999999874  22   467777   344568887 799999999999999882  1     24456678899999999


Q ss_pred             cCCCCCCCC--------CeEEec----CCCCcc-eE-EEEeecccCCCCC-CCCceEEEEEe--cCCCCCCCChHHHHHH
Q 042352          331 DKDEIPVQE--------PVLFLN----GSGKGI-VN-NMFFATNVAPLYG-PLDKALISVSL--IGLFADVMDDNLTAEV  393 (445)
Q Consensus       331 ~~~~~~~~~--------~~~~~~----~~~~~~-~~-~~~~~s~~~p~~~-p~g~~~l~~~~--~~~~~~~~~~e~~~~~  393 (445)
                      |++.-....        +...+.    ...... +. .+...+..+ .+. .+| ..+.+.+  .+.+..++++++++.+
T Consensus       394 d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~-~~~~~~g-~~l~~vis~a~~~~~~~~~ei~~~~  471 (569)
T PLN02487        394 NGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPED-YYKEGEG-SLIQAVLTPGDPYMPLSNDKIVEKV  471 (569)
T ss_pred             cccccccccccccccccccccccccccccCCCcceEeeeecCCHHH-HcccCCc-eEEEEEEcCCccccCCCHHHHHHHH
Confidence            987511110        011111    111111 10 111111100 011 223 4444443  3457789999999999


Q ss_pred             HHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352          394 IRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC  445 (445)
Q Consensus       394 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~  445 (445)
                      +++|+++||........+..+.+...+.+...||.+.+||...||+||||||
T Consensus       472 ~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LA  523 (569)
T PLN02487        472 HKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLA  523 (569)
T ss_pred             HHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEe
Confidence            9999999998654434456788899999999999999999999999999997

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=100.00  E-value=1.5e-35  Score=293.28  Aligned_cols=392  Identities=16%  Similarity=0.215  Sum_probs=266.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee-ccCCeeecccccchhccChhHHHhhcccCCcceeecC-
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYS-  127 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~-  127 (445)
                      +|+|||||++||+||+.|+++|++|+|+|+++.+||+++++ ..+|+.+|.|+|++...++.+.++++++|+.-..... 
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~   80 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE   80 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence            58999999999999999999999999999999999999997 4679999999999998889999999999986332111 


Q ss_pred             CcEEEe--CCeeEec--cCCccchHHHHHhh-cCCccchHHHHHHhhhhhh-hhhc-------chHHHhcCCCCcHHHHH
Q 042352          128 GAKVYY--NGQFHTV--ADPFRHFWDSIKSL-ANPIGSVLDKLLIGLTRIR-VLIK-------TDEQILTSSEVPIIELL  194 (445)
Q Consensus       128 ~~~~~~--~g~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~s~~~~l  194 (445)
                      ....+.  ++....+  ..+.+.++.....+ ..+...+.+++........ ....       ....+...++.|+.+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l  160 (474)
T TIGR02732        81 HTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWF  160 (474)
T ss_pred             ceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHHHH
Confidence            111122  2332221  12233343333232 3455677776654332211 0010       01223345679999999


Q ss_pred             HHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhc---C-CCccccCcccc-HHHHHHhcCC--CCcEEeCc
Q 042352          195 RNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLAL---G-DNTIPANGICQ-IPNQIASKLP--FESILLNT  267 (445)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g-~~~~~~gG~~~-l~~~l~~~l~--g~~i~~n~  267 (445)
                      ++.+.++..++.+++|++.+.+..+.++.|+......+..+..   + ...+++||.+. +.+.|.+.|+  |++|++|+
T Consensus       161 ~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~  240 (474)
T TIGR02732       161 LSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRH  240 (474)
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCC
Confidence            9988887889999999999999999998888765433323222   1 34567777665 3444555553  99999999


Q ss_pred             eeeEEEecC--CC---cCeEEeCCC---ceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecC
Q 042352          268 RVLSIDFDE--QN---MPNVRLANG---ETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADK  332 (445)
Q Consensus       268 ~V~~I~~~~--~~---~~~V~~~~g---~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~  332 (445)
                      +|++|+.++  ++   +++|++.+|   +++.+| +||+|+|++.+.+|+++..       .+..+.+.++.++++.|++
T Consensus       241 ~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~  319 (474)
T TIGR02732       241 KVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDG  319 (474)
T ss_pred             EEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEecc
Confidence            999999864  22   455566554   458898 7999999999999998721       3455677899999999987


Q ss_pred             CCCCCCC-----CeE----Eec----CCCCcceEEEEee-cccCC-CCCCCCc-eEEEEEec--CCCCCCCChHHHHHHH
Q 042352          333 DEIPVQE-----PVL----FLN----GSGKGIVNNMFFA-TNVAP-LYGPLDK-ALISVSLI--GLFADVMDDNLTAEVI  394 (445)
Q Consensus       333 ~~~~~~~-----~~~----~~~----~~~~~~~~~~~~~-s~~~p-~~~p~g~-~~l~~~~~--~~~~~~~~~e~~~~~~  394 (445)
                      +. ....     ..+    .+.    ..... + .++.. +...+ .+.+.+. .++.+.+.  +.+.+++++++++.++
T Consensus       320 ~v-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  396 (474)
T TIGR02732       320 WV-TELQDLAKRKQLKRAAGLDNLLYTADAD-F-SCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVD  396 (474)
T ss_pred             cc-ccccchhhhhcccccccccccccccCcc-c-eeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHH
Confidence            64 1111     000    011    01000 1 00011 11112 1333343 33433332  3466789999999999


Q ss_pred             HHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352          395 RELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC  445 (445)
Q Consensus       395 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~  445 (445)
                      ++|+++||.....+.....+++..++.+...||....||..+||+||||+|
T Consensus       397 ~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lA  447 (474)
T TIGR02732       397 KQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLA  447 (474)
T ss_pred             HHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEe
Confidence            999999997543334445689999999999999999999999999999998

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=100.00  E-value=9e-35  Score=288.73  Aligned_cols=391  Identities=19%  Similarity=0.274  Sum_probs=260.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCeeecccccchhccChhHHHhhcccCCccee-ecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK-FYS  127 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~-~~~  127 (445)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++.++. .+|+.+|.|.|++...++++.++++++|+.... ...
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~   80 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS   80 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence            589999999999999999999999999999999999999974 578999999999999899999999999986432 222


Q ss_pred             CcEEEe----CCeeEecc-CCccchHHHHHhhc--CCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352          128 GAKVYY----NGQFHTVA-DPFRHFWDSIKSLA--NPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS  200 (445)
Q Consensus       128 ~~~~~~----~g~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  200 (445)
                      ...++.    .+....+. ...+.+++....+.  .+...+.+++..............+.+..++++|+.+|+++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  160 (453)
T TIGR02731        81 HSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGVP  160 (453)
T ss_pred             CceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCCC
Confidence            222221    12222111 11223333322221  123445555543322111111111223346789999999999999


Q ss_pred             HHHHHHhhhhhhcccccCCccchHHHHHHHHHHH-hh-cCC--CccccCc-cccHHHHHHhcCC--CCcEEeCceeeEEE
Q 042352          201 DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC-LA-LGD--NTIPANG-ICQIPNQIASKLP--FESILLNTRVLSID  273 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~--~~~~~gG-~~~l~~~l~~~l~--g~~i~~n~~V~~I~  273 (445)
                      +.+.+.++.|++.++++.++.+.|+......+.. .. .++  ..+..|+ .+.+.++|.+.+.  |++|++|++|++|.
T Consensus       161 ~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~  240 (453)
T TIGR02731       161 ERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIV  240 (453)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEE
Confidence            9988899999999998888887777654322222 11 111  1223333 3566677766663  89999999999998


Q ss_pred             ecCCC-cCeEEeCCCc-----eEEeccEEEEcCChhHHhhhcCCC---c----ccCCCCCcceEEEEEeecCCCCCCCCC
Q 042352          274 FDEQN-MPNVRLANGE-----TLKSEIGVILAVEEPEADKLLRQP---V----KFQRKPARSTVCLYFSADKDEIPVQEP  340 (445)
Q Consensus       274 ~~~~~-~~~V~~~~g~-----~i~a~~~VV~a~~~~~~~~ll~~p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~~  340 (445)
                      .++++ +++|++.+|+     ++.|+ .||+|+|++.+.+|++++   .    ....+.+.+.+++++.++++++.. ..
T Consensus       241 ~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~  318 (453)
T TIGR02731       241 LNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTV-DH  318 (453)
T ss_pred             ECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCC-Cc
Confidence            76554 5678887765     78898 799999999999998762   1    123445778999999999986322 22


Q ss_pred             eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecC--CCCCCCChHHHHHHHHHHHhHhCCC----cCCCceEeeE
Q 042352          341 VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG--LFADVMDDNLTAEVIRELSDWFGKS----TVGSWRHLRT  414 (445)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~--~~~~~~~~e~~~~~~~~l~~~~~~~----~~~~~~~~~~  414 (445)
                      ++ +....  ........|.......+++++++.+.+..  .+.+++++|+++.++++|+++||..    ....+.....
T Consensus       319 ~~-~~~~~--~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~  395 (453)
T TIGR02731       319 LL-FSRSP--LLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKV  395 (453)
T ss_pred             ee-eeCCC--cceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEE
Confidence            22 22221  11101111111122344556777765432  3567899999999999999999963    1222333344


Q ss_pred             eecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352          415 YRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC  445 (445)
Q Consensus       415 ~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~  445 (445)
                      .+.+++.+...||....+|...||+++||+|
T Consensus       396 ~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~A  426 (453)
T TIGR02731       396 VKTPRSVYKTTPGRQQYRPHQKTPIPNFFLA  426 (453)
T ss_pred             EECCCceeccCCCChhhCccccCccCCEEEe
Confidence            5778887777788766788889999999987

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07208 hypothetical protein; Provisional

Probab=100.00  E-value=5.1e-35  Score=292.70  Aligned_cols=383  Identities=21%  Similarity=0.228  Sum_probs=266.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc--c
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN--L  122 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~--~  122 (445)
                      |+++.||+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+|.|+|++...++.+.+++++++..  +
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~   80 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDF   80 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCCCcc
Confidence            46678999999999999999999999999999999999999999999999999999999988899999999998752  2


Q ss_pred             eeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHH
Q 042352          123 QKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS  202 (445)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~  202 (445)
                      ........++++|++..++...   .+.+..     ....+........+.....     ...++.|+.+|+++ .++++
T Consensus        81 ~~~~~~~~~~~~g~~~~~p~~~---~~~l~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~e~l~~-~~g~~  146 (479)
T PRK07208         81 LLRPRLSRIYYRGKFFDYPLKA---FDALKN-----LGLWRTAKCGASYLKARLR-----PRKEEDSFEDWVIN-RFGRR  146 (479)
T ss_pred             ccccccceEEECCEEecCCcch---hHHHHh-----CCHhHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHH-hhCHH
Confidence            2223445667788776554221   111111     1111221111111111000     11257899999987 58899


Q ss_pred             HHHHhhhhhhcccccCCccchHHHHHH----------HHHHHhh----------------cCCCccccCccccHHHHHHh
Q 042352          203 IIDSFFRPFFGGIFFDKELETSSRLFD----------FIFKCLA----------------LGDNTIPANGICQIPNQIAS  256 (445)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~----------------~g~~~~~~gG~~~l~~~l~~  256 (445)
                      +.+.++.|++.++|+.++.+++..+..          .+.....                .....+|+||++.++++|++
T Consensus       147 ~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~  226 (479)
T PRK07208        147 LYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAE  226 (479)
T ss_pred             HHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHH
Confidence            999999999999999998887765311          1111111                01345789999999999998


Q ss_pred             cCC--CCcEEeCceeeEEEecCCCcC-eEEe--CCCc--eEEeccEEEEcCChhHHhhhcCC--Cc----ccCCCCCcce
Q 042352          257 KLP--FESILLNTRVLSIDFDEQNMP-NVRL--ANGE--TLKSEIGVILAVEEPEADKLLRQ--PV----KFQRKPARST  323 (445)
Q Consensus       257 ~l~--g~~i~~n~~V~~I~~~~~~~~-~V~~--~~g~--~i~a~~~VV~a~~~~~~~~ll~~--p~----~~~~~~~~~~  323 (445)
                      .+.  |++|++|++|++|..++++.+ .+..  .+|+  ++.|+ +||+|+|++.+.+++.+  |.    ....+.+.+.
T Consensus       227 ~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~  305 (479)
T PRK07208        227 KLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDF  305 (479)
T ss_pred             HHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHhcCCCCCHHHHHHHhCCCccee
Confidence            885  899999999999999877633 3333  2453  58888 79999999998888864  22    3456778888


Q ss_pred             EEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCCCCCCCCce-EEEEEe--c--CCCCCCCChHHHHHHHHHHH
Q 042352          324 VCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKA-LISVSL--I--GLFADVMDDNLTAEVIRELS  398 (445)
Q Consensus       324 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~-~l~~~~--~--~~~~~~~~~e~~~~~~~~l~  398 (445)
                      +++++.++++. ....+++++++.. ..+..+...++..|...|+|++ .+.+.+  .  ....+++++++++.++++|.
T Consensus       306 ~~v~l~~~~~~-~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~  383 (479)
T PRK07208        306 ITVGLLVKELN-LFPDNWIYIHDPD-VKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELA  383 (479)
T ss_pred             EEEEEEecCCC-CCCCceEEecCCC-CccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHH
Confidence            99999999874 2344455554432 1233344456666788888874 333222  1  23446789999999999999


Q ss_pred             hHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCC---cccCCCCeeeC
Q 042352          399 DWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNP---KSEFSLAVYLC  445 (445)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~t~~~g~~~~  445 (445)
                      ++.+ ..........+.+..++.|.+.+|.....+.   ..++.||||+|
T Consensus       384 ~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~la  432 (479)
T PRK07208        384 RLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLV  432 (479)
T ss_pred             HcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceee
Confidence            9743 2233444566788889999888877533221   23568899986

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=4e-34  Score=287.60  Aligned_cols=389  Identities=18%  Similarity=0.176  Sum_probs=244.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc------cee
Q 042352           51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN------LQK  124 (445)
Q Consensus        51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~------~~~  124 (445)
                      |||||||++||+||++|+++|++|+|+||++++||++++++.+|+.+|.|++++.. ...+.++++++|++      +.+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~-~~~~~~l~~~lg~~l~~~l~~~~   79 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM-PEALEELFALAGRDLADYVELVP   79 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc-ccHHHHHHHHcCCChhheEEEEE
Confidence            68999999999999999999999999999999999999999999999999998753 23466777777643      233


Q ss_pred             ecCCcEEEeC-CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh-----h----hcch---------HHHhcC
Q 042352          125 FYSGAKVYYN-GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV-----L----IKTD---------EQILTS  185 (445)
Q Consensus       125 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~---------~~~~~~  185 (445)
                      ..+...+.+. |....+........+.+..++........++......+..     .    ....         ......
T Consensus        80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (502)
T TIGR02734        80 LDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALL  159 (502)
T ss_pred             CCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhcc
Confidence            3333334333 4444443333333333333221111111111111111000     0    0000         111223


Q ss_pred             CCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CCcE
Q 042352          186 SEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FESI  263 (445)
Q Consensus       186 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~~i  263 (445)
                      ...++.+++++. +.++.++.++.. ....++.++.+.++ .+..+......++.+++.||++.++++|.+.++  |++|
T Consensus       160 ~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~-~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~i  236 (502)
T TIGR02734       160 AWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPS-IYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGEL  236 (502)
T ss_pred             CcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchH-HHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCEE
Confidence            467888999875 566667766642 22334445544443 333333333346677899999999999998775  9999


Q ss_pred             EeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCCCc-------c-cCCCCCcceEEEEEeec---
Q 042352          264 LLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQPV-------K-FQRKPARSTVCLYFSAD---  331 (445)
Q Consensus       264 ~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~p~-------~-~~~~~~~~~~~v~~~~~---  331 (445)
                      +++++|++|..+++++++|++.+|++++|+ .||+|+++..+ ..|++++.       . .....+.+.+++|++++   
T Consensus       237 ~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad-~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~  315 (502)
T TIGR02734       237 RLNAEVIRIETEGGRATAVHLADGERLDAD-AVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVD  315 (502)
T ss_pred             EECCeEEEEEeeCCEEEEEEECCCCEEECC-EEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeecccc
Confidence            999999999988777788999999889998 69999999765 45665521       1 12234678899999998   


Q ss_pred             CCCCCCCCCeEEecCCCC--------------cceEEEEeecccCCCCCCCCceEEEEEecCCCC-----CC--CChHHH
Q 042352          332 KDEIPVQEPVLFLNGSGK--------------GIVNNMFFATNVAPLYGPLDKALISVSLIGLFA-----DV--MDDNLT  390 (445)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~-----~~--~~~e~~  390 (445)
                      +++-...+|.+++..+..              .+...+..+|..||+.+|+|++++.+.......     +|  .++++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~  395 (502)
T TIGR02734       316 GHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYR  395 (502)
T ss_pred             CcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHH
Confidence            443113345555433221              234556778999999999999888765532221     23  246789


Q ss_pred             HHHHHHHHhH-hCCCcCCCceEe--------eEee--cCCCCC--CCCCCC-CCCCCC-cccCCCCeeeC
Q 042352          391 AEVIRELSDW-FGKSTVGSWRHL--------RTYR--VRFAQP--NQSPPT-DLIKNP-KSEFSLAVYLC  445 (445)
Q Consensus       391 ~~~~~~l~~~-~~~~~~~~~~~~--------~~~~--~~~~~~--~~~~g~-~~~~~~-~~t~~~g~~~~  445 (445)
                      +.+++.|++. +|+.+. .+...        +.|.  .+-+..  .....+ ..+||. ..|+++|||+|
T Consensus       396 ~~il~~l~~~~~p~l~~-~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~  464 (502)
T TIGR02734       396 DRILAYLEERAIPGLRD-RIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLV  464 (502)
T ss_pred             HHHHHHHHHhcCCChhH-heEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEe
Confidence            9999999998 998642 12211        1111  111111  111121 235775 57899999997

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=100.00  E-value=8.9e-34  Score=284.20  Aligned_cols=391  Identities=17%  Similarity=0.213  Sum_probs=237.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccC--hhHHHhhcccCCcce---
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAY--PEAQKLLDYNALNLQ---  123 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~--~~~~~l~~~lgl~~~---  123 (445)
                      .||+|||||++||+||..|+++|++|+|+|+++++||++++++.+|+.+|.|+|++....  .....+++++|+++.   
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~   81 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK   81 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence            589999999999999999999999999999999999999999999999999999986532  235677888887643   


Q ss_pred             eecCCcEEEeC-C-eeEeccCCccchHHHHHhhcCCccchHHHHHHhhhh---------------hhhh------hcch-
Q 042352          124 KFYSGAKVYYN-G-QFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTR---------------IRVL------IKTD-  179 (445)
Q Consensus       124 ~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~------~~~~-  179 (445)
                      ...+...+.+. | ....+........+.+...+.....+...+......               ....      .... 
T Consensus        82 ~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (492)
T TIGR02733        82 ILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDT  161 (492)
T ss_pred             cCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhh
Confidence            23333344443 3 222222222222222222111111111111100000               0000      0000 


Q ss_pred             HHHhcCCCCcHHHHHHHcC-CCHHHHHHhhhhhhcccccCCccchHHHHHHH-HHHHh-hcCCCccccCccccHHHHHHh
Q 042352          180 EQILTSSEVPIIELLRNIG-FSDSIIDSFFRPFFGGIFFDKELETSSRLFDF-IFKCL-ALGDNTIPANGICQIPNQIAS  256 (445)
Q Consensus       180 ~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~gG~~~l~~~l~~  256 (445)
                      .....+...|+.+|+++.+ +.++.++.++.... ..+...+....+..+.. +.... ...+.+++.||++.|+++|++
T Consensus       162 ~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~~aL~~  240 (492)
T TIGR02733       162 LLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQL-KLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLSDRLVE  240 (492)
T ss_pred             hhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHH-hhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHHHHHHH
Confidence            0011123578999998754 45666777775433 23444444333344432 22222 224577899999999999999


Q ss_pred             cCC--CCcEEeCceeeEEEecCCCcCeEEeCCC-----ceEEeccEEEEcCChhHHhhhcCCCc-------ccCCC-CCc
Q 042352          257 KLP--FESILLNTRVLSIDFDEQNMPNVRLANG-----ETLKSEIGVILAVEEPEADKLLRQPV-------KFQRK-PAR  321 (445)
Q Consensus       257 ~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g-----~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~-~~~  321 (445)
                      .++  |++|++|++|++|..+++++.+|.+.+|     +++.|+ +||+|+|+..+.+|++++.       ..+.. ...
T Consensus       241 ~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~  319 (492)
T TIGR02733       241 ALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPS  319 (492)
T ss_pred             HHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCC
Confidence            885  8999999999999998876667776665     578898 7999999999988987522       22233 455


Q ss_pred             ceEEEEEeecCCCCCC--CCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC---CCCC-------CChHH
Q 042352          322 STVCLYFSADKDEIPV--QEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL---FADV-------MDDNL  389 (445)
Q Consensus       322 ~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~---~~~~-------~~~e~  389 (445)
                      +.+++|+++++...++  ..++...... .+ ...+.. +..+|+.+|+|++++.+....+   |..+       .++++
T Consensus       320 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~-~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~  396 (492)
T TIGR02733       320 GAFVFYLGVKRAALPVDCPPHLQFLSDH-QG-SLFVSI-SQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY  396 (492)
T ss_pred             ceEEEEEeecccccCCCCCcceeeccCC-Cc-eEEEEe-CCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence            5779999998743222  2333222221 22 222333 3357889999999987654433   2211       14568


Q ss_pred             HHHHHHHHHhHhCCCcCCCceEee--------Ee--e-cCCC-CCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352          390 TAEVIRELSDWFGKSTVGSWRHLR--------TY--R-VRFA-QPNQSPPTD-LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       390 ~~~~~~~l~~~~~~~~~~~~~~~~--------~~--~-~~~~-~~~~~~g~~-~~~~~~~t~~~g~~~~  445 (445)
                      .+.+++.|++.+|+.+. ++....        .|  . .|.. .....+.+. .+|+..+|+++|||+|
T Consensus       397 ~~~il~~le~~~p~l~~-~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~  464 (492)
T TIGR02733       397 TQTIIERLGHYFDLLEE-NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLC  464 (492)
T ss_pred             HHHHHHHHHHHCCCccc-cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEe
Confidence            89999999999998642 222111        11  0 0111 111122221 2456668999999997

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02730 carot_isom carotene isomerase

Probab=100.00  E-value=7.4e-33  Score=277.07  Aligned_cols=354  Identities=17%  Similarity=0.157  Sum_probs=221.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhcc----Ch-hHHHhhcccCCcce
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA----YP-EAQKLLDYNALNLQ  123 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~----~~-~~~~l~~~lgl~~~  123 (445)
                      +||+|||||++||+||.+|+++|++|+|+||++.+||++++++.+|+.+|.|++++.+.    .+ .+.++++.++..+.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE   80 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence            59999999999999999999999999999999999999999999999999999987542    22 24455555554333


Q ss_pred             eecCC--cEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh----h-h---cc--------------
Q 042352          124 KFYSG--AKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV----L-I---KT--------------  178 (445)
Q Consensus       124 ~~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~---~~--------------  178 (445)
                      .....  ..+.+ +|....+........+.+.+.+.......+++.........    . .   ..              
T Consensus        81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (493)
T TIGR02730        81 TIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLA  160 (493)
T ss_pred             ccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhh
Confidence            22211  12222 33333333333333333333221111111111111000000    0 0   00              


Q ss_pred             hHHHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccC-CccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhc
Q 042352          179 DEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFD-KELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASK  257 (445)
Q Consensus       179 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~  257 (445)
                      ...+..+...++.+++++. +.++.++.++...+. .++. +..+.+.......+.....++.++|.||++.++++|.+.
T Consensus       161 ~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~~~~-~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~  238 (493)
T TIGR02730       161 CLGLAKYLPQNAGDIARRY-IRDPGLLKFIDIECF-CWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKG  238 (493)
T ss_pred             hhHHHHHhhccHHHHHHHh-cCCHHHHHHHHHHHH-hccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHH
Confidence            0001112246788888775 455556666543221 1222 223333222222222233467889999999999999988


Q ss_pred             CC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCCC---c----c-cCCCCCcceEEE
Q 042352          258 LP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQP---V----K-FQRKPARSTVCL  326 (445)
Q Consensus       258 l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~p---~----~-~~~~~~~~~~~v  326 (445)
                      ++  |++|+++++|++|..+++++.+|++.+|++++|+ .||+|++++.+ .+|+++.   .    . .......+.+++
T Consensus       239 ~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad-~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~  317 (493)
T TIGR02730       239 LEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAK-RIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSL  317 (493)
T ss_pred             HHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcC-EEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEE
Confidence            86  9999999999999988877889999999889998 69999988765 5687652   1    1 122446678999


Q ss_pred             EEeecCCCCCC--CCCeEEecCCC----CcceEEEEeecccCCCCCCCCceEEEEEecCC---CCC-----C--CChHHH
Q 042352          327 YFSADKDEIPV--QEPVLFLNGSG----KGIVNNMFFATNVAPLYGPLDKALISVSLIGL---FAD-----V--MDDNLT  390 (445)
Q Consensus       327 ~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~---~~~-----~--~~~e~~  390 (445)
                      |++++....|.  ..+.+.+....    ......+.++|..||+++|+|++++.+.....   |.+     |  .++++.
T Consensus       318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~  397 (493)
T TIGR02730       318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA  397 (493)
T ss_pred             EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence            99998854221  11222222111    11244567788899999999999987765322   221     2  246689


Q ss_pred             HHHHHHHHhHhCCCc
Q 042352          391 AEVIRELSDWFGKST  405 (445)
Q Consensus       391 ~~~~~~l~~~~~~~~  405 (445)
                      +.+++.|++++|+.+
T Consensus       398 ~~il~~l~~~~p~l~  412 (493)
T TIGR02730       398 ERIIDRLEKIFPGLD  412 (493)
T ss_pred             HHHHHHHHHHCCChh
Confidence            999999999999864

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-32  Score=273.30  Aligned_cols=393  Identities=21%  Similarity=0.245  Sum_probs=237.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccCh-hH-HHhh--cccCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP-EA-QKLL--DYNALNL  122 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~-~~-~~l~--~~lgl~~  122 (445)
                      ..+||||||||++||+||.+|+++|++|+|+||++.+||++++++.+|+.||.|++++..... .+ .++-  +..++.+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l~~   81 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPGPLFRELGNLDADGLDL   81 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchHHHHHHhccCcccceee
Confidence            468999999999999999999999999999999999999999999999999999987654322 22 2222  2233333


Q ss_pred             eeecCCcEEEeC-CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhh----hhh-hh-----------c---chHHH
Q 042352          123 QKFYSGAKVYYN-GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTR----IRV-LI-----------K---TDEQI  182 (445)
Q Consensus       123 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-----------~---~~~~~  182 (445)
                      ....+....... |........+...................++...+.+    +.. ..           .   ..-..
T Consensus        82 ~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (487)
T COG1233          82 LPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRL  161 (487)
T ss_pred             eccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHH
Confidence            333333334443 4444443333333333332222222222222111111    000 00           0   00001


Q ss_pred             hcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCC--C
Q 042352          183 LTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLP--F  260 (445)
Q Consensus       183 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g  260 (445)
                      ......+..+++... +..+.++..+.......+ .++.+.. .++.++......+++.+|+||++.|+++|++.++  |
T Consensus       162 ~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~-a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~~G  238 (487)
T COG1233         162 LGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP-ALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREHG  238 (487)
T ss_pred             HHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh-HHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHHHHcC
Confidence            112345666666665 666666665543322222 3444444 5555666666677899999999999999999886  9


Q ss_pred             CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc----ccCCCCCcceEEEEEeecCCCCC
Q 042352          261 ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV----KFQRKPARSTVCLYFSADKDEIP  336 (445)
Q Consensus       261 ~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~----~~~~~~~~~~~~v~~~~~~~~~~  336 (445)
                      |+|+++++|++|..++++.+++++.+|+.++++ .||++........+.+...    .....+..+.+..+++++....+
T Consensus       239 g~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad-~vv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~al~~~~g~~~~~~~  317 (487)
T COG1233         239 GEIRTGAEVSQILVEGGKGVGVRTSDGENIEAD-AVVSNADPALLARLLGEARRPRYRGSYLKSLSALSLYLGLKGDLLP  317 (487)
T ss_pred             CEEECCCceEEEEEeCCcceEEeccccceeccc-eeEecCchhhhhhhhhhhhhhccccchhhhhHHHHhccCCCCCCcc
Confidence            999999999999999988788888888678888 7999999954555555411    22334566677777877764112


Q ss_pred             CCCC-eEEecCCCC---cc---------eEEEEeecccCCCCCCCCceEEEEEecCCC--CC--CCChHHHHHHHHHHHh
Q 042352          337 VQEP-VLFLNGSGK---GI---------VNNMFFATNVAPLYGPLDKALISVSLIGLF--AD--VMDDNLTAEVIRELSD  399 (445)
Q Consensus       337 ~~~~-~~~~~~~~~---~~---------~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~--~~--~~~~e~~~~~~~~l~~  399 (445)
                      ..++ .++..++..   ..         +..+..||..||+++|+|++.+...+..-+  ..  -.++++.+. +.++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  396 (487)
T COG1233         318 LAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESLADA-IDALEE  396 (487)
T ss_pred             hhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHHHHH-HHHHhh
Confidence            3233 333333321   11         347888999999999999872222221111  11  123444444 568899


Q ss_pred             HhCCCcCCCceEeeEeec-----------C--CCCCCCCCCCCCCCCCc-ccCCCCeeeC
Q 042352          400 WFGKSTVGSWRHLRTYRV-----------R--FAQPNQSPPTDLIKNPK-SEFSLAVYLC  445 (445)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~g~~~~~~~~-~t~~~g~~~~  445 (445)
                      ++|+.+... .+...+..           |  +............||.. +||++|||+|
T Consensus       397 ~~p~~~~~i-v~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~  455 (487)
T COG1233         397 LAPGLRDRI-VAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLV  455 (487)
T ss_pred             cCCCcccce-eEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEe
Confidence            999866322 22122111           1  11112222233557765 5999999997

>PLN02268 probable polyamine oxidase

Probab=100.00  E-value=6.4e-32  Score=267.05  Aligned_cols=367  Identities=18%  Similarity=0.179  Sum_probs=226.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhcc--ChhHHHhhcccCCcceeec
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA--YPEAQKLLDYNALNLQKFY  126 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~~~~  126 (445)
                      .+|+|||||++||+||+.|.++|++|+|||+++++|||+.|.+.+|+.+|+|++|+.+.  .+.+.++++++|++..+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~   80 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS   80 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence            47999999999999999999999999999999999999999888899999999998753  3358899999999765432


Q ss_pred             CCc-EEEeCC-e-eEeccCC-ccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcC----
Q 042352          127 SGA-KVYYNG-Q-FHTVADP-FRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIG----  198 (445)
Q Consensus       127 ~~~-~~~~~g-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~----  198 (445)
                      ... .++..+ . ...+... ...+....           ..+...+.++....... .....++.|+.+|+++..    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~  148 (435)
T PLN02268         81 GDNSVLYDHDLESYALFDMDGNQVPQELV-----------TKVGETFERILEETEKV-RDEHEEDMSLLQAISIVLERHP  148 (435)
T ss_pred             CCccccccccccccceecCCCCCCCHHHH-----------HHHHHHHHHHHHHHHHH-HhccCCCcCHHHHHHHHhhhCc
Confidence            221 112111 0 0000000 00011111           01111111111100000 011346788888875421    


Q ss_pred             ------CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEE
Q 042352          199 ------FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSI  272 (445)
Q Consensus       199 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I  272 (445)
                            +.++++..++.+ +.+.++.+..+++...+..  .....|++..+.+|+++++++|++.   ++|++|++|++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~~~g~~~~~~~G~~~l~~~l~~~---~~i~~~~~V~~i  222 (435)
T PLN02268        149 ELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EELLEGGHGLMVRGYDPVINTLAKG---LDIRLNHRVTKI  222 (435)
T ss_pred             ccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--ccccCCCceeecCCHHHHHHHHhcc---CceeCCCeeEEE
Confidence                  234444444445 3345666666665442211  0011244567788999999999874   479999999999


Q ss_pred             EecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhh--cCCC---c----ccCCCCCcceEEEEEeecCCCCCCCCCeEE
Q 042352          273 DFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKL--LRQP---V----KFQRKPARSTVCLYFSADKDEIPVQEPVLF  343 (445)
Q Consensus       273 ~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~l--l~~p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  343 (445)
                      ..++++ +.|++.+|+++.|+ +||+|+|+..++++  ...|   +    .++...+....++++.|+++||+.. ....
T Consensus       223 ~~~~~~-v~v~~~~g~~~~ad-~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g  299 (435)
T PLN02268        223 VRRYNG-VKVTVEDGTTFVAD-AAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLG  299 (435)
T ss_pred             EEcCCc-EEEEECCCcEEEcC-EEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceee
Confidence            988765 67888899889998 79999999998642  2223   2    3456778889999999999987532 2211


Q ss_pred             -ecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc------CCCceEe
Q 042352          344 -LNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST------VGSWRHL  412 (445)
Q Consensus       344 -~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~------~~~~~~~  412 (445)
                       +.+...    .+.+.++..   .+.|..++.++..+.    +.+++++++++.++++|+++||...      ..+|...
T Consensus       300 ~~~~~~~----~~~~~~~~~---~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~d  372 (435)
T PLN02268        300 VVAPTSY----GCSYFLNLH---KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSD  372 (435)
T ss_pred             ccCCCCC----CceEEEecc---cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCC
Confidence             111101    111212211   124566666655443    4568899999999999999998642      3455432


Q ss_pred             eEeecCCCCCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352          413 RTYRVRFAQPNQSPPTD-LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       413 ~~~~~~~~~~~~~~g~~-~~~~~~~t~~~g~~~~  445 (445)
                      +-.+.+|+.+  .||+. ...+.-.+|+.+||+|
T Consensus       373 p~~~G~~~~~--~~g~~~~~~~~l~~p~~~l~FA  404 (435)
T PLN02268        373 PNSLGCYSYD--LVGKPHDLYERLRAPVDNLFFA  404 (435)
T ss_pred             CCCCccCCCC--CCCCCHHHHHHHhCCCCCeEEe
Confidence            2222234433  46653 2233345567778876

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.98  E-value=6.2e-30  Score=252.33  Aligned_cols=369  Identities=19%  Similarity=0.256  Sum_probs=243.2

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCcceeeeccCCe--eecccccchhccChhHHHhhcccCCcceee-cCCcEEEe-CC-e
Q 042352           62 AAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF--LLDRGFQIFITAYPEAQKLLDYNALNLQKF-YSGAKVYY-NG-Q  136 (445)
Q Consensus        62 saA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~--~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~-~~~~~~~~-~g-~  136 (445)
                      +||++|+++|++|+|+|+++++||++.|++.+|+  .+|.|+|++.+.++.+.++++++|++.... ......+. .+ .
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~   80 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGR   80 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCC
Confidence            5899999999999999999999999999988865  499999999888899999999999865432 11122222 12 2


Q ss_pred             eEec-cCCccchHHHHHhh-cCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcc
Q 042352          137 FHTV-ADPFRHFWDSIKSL-ANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGG  214 (445)
Q Consensus       137 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~  214 (445)
                      ...+ ..+++.+......+ ..+.....++...... +..... . .....++.|+.+|+++.+++++..+.++.+++.+
T Consensus        81 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~-~-~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~  157 (419)
T TIGR03467        81 LSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARA-LLALRR-T-RFRALDDTTVGDWLQAAGQSERLIERLWEPLLLS  157 (419)
T ss_pred             ceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHh-c-CccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            1111 11233333322222 1122233333221111 001000 0 0124567999999999888889899899999999


Q ss_pred             cccCCccchHHHHHHHHHH-Hhhc----CCCccccCccccHH-HHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCC
Q 042352          215 IFFDKELETSSRLFDFIFK-CLAL----GDNTIPANGICQIP-NQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLAN  286 (445)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~-~~~~----g~~~~~~gG~~~l~-~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~  286 (445)
                      .|+.++.++++......+. .+..    ....+|.||+++++ ++|++.++  |++|++|++|++|+.+++++..+...+
T Consensus       158 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~  237 (419)
T TIGR03467       158 ALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSG  237 (419)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecC
Confidence            9999988888765443332 1211    24678899988776 44777663  899999999999999887633222346


Q ss_pred             CceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCC
Q 042352          287 GETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAP  363 (445)
Q Consensus       287 g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p  363 (445)
                      |+++.|| .||+|+|++.+.+|++++.   .+....+.++.++++.|++++|. +.....+...   .. ..++...   
T Consensus       238 g~~~~~d-~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~~---~~-~~~~~~~---  308 (419)
T TIGR03467       238 GETLPAD-AVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRAVRL-PAPMVGLVGG---LA-QWLFDRG---  308 (419)
T ss_pred             CccccCC-EEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCCcCC-CCCeeeecCC---ce-eEEEECC---
Confidence            7788998 7999999999999998733   45667888899999999998742 2222222221   11 1222211   


Q ss_pred             CCCCCCceEEEEEec--CCCCCCCChHHHHHHHHHHHhHhCCCcC--CCceEeeEeecCCCCCCCCCCCCCCCCCcccCC
Q 042352          364 LYGPLDKALISVSLI--GLFADVMDDNLTAEVIRELSDWFGKSTV--GSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFS  439 (445)
Q Consensus       364 ~~~p~g~~~l~~~~~--~~~~~~~~~e~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~  439 (445)
                      ...+. ..++.+...  ..+.+++++++++.++++|+++||....  ..|.  .+++..++.+...||....+|...+|+
T Consensus       309 ~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~  385 (419)
T TIGR03467       309 QLAGE-PGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWA--RVIKEKRATFAATPGLNRLRPGARTPW  385 (419)
T ss_pred             cCCCC-CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccce--EEEEccCCccccCCcccccCCCCCCCc
Confidence            11111 123333222  2356789999999999999999997522  2343  344445566667778776788888899


Q ss_pred             CCeeeC
Q 042352          440 LAVYLC  445 (445)
Q Consensus       440 ~g~~~~  445 (445)
                      +|||+|
T Consensus       386 ~~l~~a  391 (419)
T TIGR03467       386 PNLFLA  391 (419)
T ss_pred             CCEEEe
Confidence            999997

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02529 lysine-specific histone demethylase 1

Probab=99.97  E-value=1.6e-28  Score=249.13  Aligned_cols=347  Identities=18%  Similarity=0.177  Sum_probs=215.2

Q ss_pred             cCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--C--
Q 042352           19 SKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--G--   94 (445)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g--   94 (445)
                      ...+.|..++++.+.      .  .+....+||+|||||++||+||..|+++|++|+|+|+++++||++.+...+  |  
T Consensus       139 ~~~inc~vnp~~~~~------~--~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~  210 (738)
T PLN02529        139 NGYINFGVSPSFASP------I--PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQF  210 (738)
T ss_pred             CCCcceeecccccCC------C--CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCc
Confidence            456788888755431      1  112356799999999999999999999999999999999999999998774  3  


Q ss_pred             eeecccccchhccChh-HHHhhcccCCcceeecCCcEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhh
Q 042352           95 FLLDRGFQIFITAYPE-AQKLLDYNALNLQKFYSGAKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRI  172 (445)
Q Consensus        95 ~~~d~G~~~~~~~~~~-~~~l~~~lgl~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (445)
                      ..+|+|++|+.+...+ +..+.+++++++........++. +|......  .....   .       ....++.   .++
T Consensus       211 ~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G~~v~~~--~~~~~---~-------~~~~~~l---~~~  275 (738)
T PLN02529        211 AAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGALVDKE--IDSNI---E-------FIFNKLL---DKV  275 (738)
T ss_pred             eEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCCcCcchh--hhhhH---H-------HHHHHHH---HHH
Confidence            4899999999875444 67788999988766544433333 33322110  00000   0       0001111   111


Q ss_pred             hhhhcchHHHhcCCCCcHHHHHHHcC------CCHHHHHHhhhhhhccc---ccCCccchHHHHHHHHHHHhhcCCCccc
Q 042352          173 RVLIKTDEQILTSSEVPIIELLRNIG------FSDSIIDSFFRPFFGGI---FFDKELETSSRLFDFIFKCLALGDNTIP  243 (445)
Q Consensus       173 ~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~  243 (445)
                      .......+  ...++.|+.+++++..      +++. .+.++.-....+   +......++...+.........|.+..+
T Consensus       276 ~~l~~~~~--~~~~d~Sl~~~le~~~~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i  352 (738)
T PLN02529        276 TELRQIMG--GFANDISLGSVLERLRQLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFL  352 (738)
T ss_pred             HHHHHhcc--cCccCCCHHHHHHHHHhhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEE
Confidence            11100111  1345789999987532      2222 122222222112   2222222332222111011123457788


Q ss_pred             cCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCC---Cc----c
Q 042352          244 ANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQ---PV----K  314 (445)
Q Consensus       244 ~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~---p~----~  314 (445)
                      .||+++|+++|++.+   .|++|++|++|..++++ +.|++ +++++.|+ +||+|+|+.++++  +...   |+    +
T Consensus       353 ~GG~~~Li~aLA~~L---~IrLnt~V~~I~~~~dG-VtV~t-~~~~~~AD-~VIVTVPlgVLk~~~I~F~PpLP~~K~~A  426 (738)
T PLN02529        353 AGGNWRLINALCEGV---PIFYGKTVDTIKYGNDG-VEVIA-GSQVFQAD-MVLCTVPLGVLKKRTIRFEPELPRRKLAA  426 (738)
T ss_pred             CCcHHHHHHHHHhcC---CEEcCCceeEEEEcCCe-EEEEE-CCEEEEcC-EEEECCCHHHHHhccccCCCCCCHHHHHH
Confidence            999999999999865   69999999999998766 56665 44578998 7999999999973  3333   32    4


Q ss_pred             cCCCCCcceEEEEEeecCCCCCCCCCeEEecC-C--CCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCCh
Q 042352          315 FQRKPARSTVCLYFSADKDEIPVQEPVLFLNG-S--GKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDD  387 (445)
Q Consensus       315 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~  387 (445)
                      ++.+.+....++++.|+++||+.....+.+.. .  ..+.+  ..+.+..    .+.+..++.++..+.    +..++++
T Consensus       427 I~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~--~~~~~~~----~~~ggpvLvafv~G~~A~~le~lsde  500 (738)
T PLN02529        427 IDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEF--FLFYGYH----TVSGGPALVALVAGEAAQRFENTDPS  500 (738)
T ss_pred             HHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceE--EEEecCC----CCCCCCEEEEEECchhhHHHhcCCHH
Confidence            67788899999999999998754333322221 1  11222  2222211    122335565655543    4568899


Q ss_pred             HHHHHHHHHHHhHhCC
Q 042352          388 NLTAEVIRELSDWFGK  403 (445)
Q Consensus       388 e~~~~~~~~l~~~~~~  403 (445)
                      ++++.++++|+++|+.
T Consensus       501 eii~~vl~~L~~ifgp  516 (738)
T PLN02529        501 TLLHRVLSVLRGIYNP  516 (738)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999999999973

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.97  E-value=1.6e-28  Score=225.24  Aligned_cols=208  Identities=17%  Similarity=0.157  Sum_probs=141.8

Q ss_pred             hcCCCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC-
Q 042352          236 ALGDNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ-  311 (445)
Q Consensus       236 ~~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~-  311 (445)
                      ..+++.||.||++.+.+++++.++  |++|.+++.|.+|..+++++++|.+.||+++.++ .||+++.+|.+ .+|++. 
T Consensus       252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk-~VvSNAt~~~Tf~kLlp~e  330 (561)
T KOG4254|consen  252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSK-IVVSNATPWDTFEKLLPGE  330 (561)
T ss_pred             cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEee-eeecCCchHHHHHHhCCCc
Confidence            456899999999999999999887  9999999999999999988999999999999997 89999999876 589988 


Q ss_pred             --Cc--ccCCCCCcc-eE----EEEEeecCC-CCCCCCCeE--E------------ecCCCC-----cceEEEEeecccC
Q 042352          312 --PV--KFQRKPARS-TV----CLYFSADKD-EIPVQEPVL--F------------LNGSGK-----GIVNNMFFATNVA  362 (445)
Q Consensus       312 --p~--~~~~~~~~~-~~----~v~~~~~~~-~~~~~~~~~--~------------~~~~~~-----~~~~~~~~~s~~~  362 (445)
                        |+  .+++..+.+ ..    -.++..+.. ..|.+++.+  .            +.+++.     .++..+++||..|
T Consensus       331 ~LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lD  410 (561)
T KOG4254|consen  331 ALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLD  410 (561)
T ss_pred             cCCchhhhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccC
Confidence              44  233332222 12    123332222 123333321  1            111111     2356789999999


Q ss_pred             CCCCCCCceEEEEEecC---CCCCC-------CChHHHHHHHHHHHhHhCCCcCCCceEee--------E--eecCCCCC
Q 042352          363 PLYGPLDKALISVSLIG---LFADV-------MDDNLTAEVIRELSDWFGKSTVGSWRHLR--------T--YRVRFAQP  422 (445)
Q Consensus       363 p~~~p~g~~~l~~~~~~---~~~~~-------~~~e~~~~~~~~l~~~~~~~~~~~~~~~~--------~--~~~~~~~~  422 (445)
                      |+.+|+|+|++..+...   .|...       -++++.+.+.+.+++++|+.... .+...        +  -+.+-...
T Consensus       411 ptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsss-v~~~dvgTP~t~qr~l~~~~Gn~~  489 (561)
T KOG4254|consen  411 PTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSS-VESYDVGTPPTHQRFLGRPGGNIF  489 (561)
T ss_pred             CCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccce-EEEEecCCCchhhHHhcCCCCccc
Confidence            99999999999887533   23321       25789999999999999987532 22111        1  11112222


Q ss_pred             CCCCCCCCC---CCCc-----ccCCCCeeeC
Q 042352          423 NQSPPTDLI---KNPK-----SEFSLAVYLC  445 (445)
Q Consensus       423 ~~~~g~~~~---~~~~-----~t~~~g~~~~  445 (445)
                      ..+-+.+..   ||..     .|||||||||
T Consensus       490 ~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlc  520 (561)
T KOG4254|consen  490 HGAMGLDQGYLHRPVMAWSNYSTPIPGLYLC  520 (561)
T ss_pred             CcccccccccccCCccccccCCCCCCceEEe
Confidence            211233322   7777     9999999998

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.96  E-value=1e-27  Score=219.18  Aligned_cols=366  Identities=22%  Similarity=0.254  Sum_probs=249.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCE--EEEecCCCCCcceee-eccCCeeecccccchhccCh---hHHHhhcccCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPF--VLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAYP---EAQKLLDYNALN  121 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V--~vlE~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lgl~  121 (445)
                      ..+|+|+|||++||+|||+|++++.+|  +|+|+.+++||.++| ...+|++||.|+..+.+..+   .+.++++++|++
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~   90 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE   90 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence            468999999999999999999997755  569999999999999 55678999999999988766   688999999995


Q ss_pred             --ceeecC------CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHH
Q 042352          122 --LQKFYS------GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIEL  193 (445)
Q Consensus       122 --~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  193 (445)
                        +.++..      ..++++.|++...+..+....      ......+...+..++.+-.  .+. ..-....++|+++|
T Consensus        91 ~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~------~~~l~p~~k~L~~a~l~e~--fr~-~~~~~~~dESV~sF  161 (491)
T KOG1276|consen   91 DELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSL------KFSLQPFGKPLLEAFLREL--FRK-KVSDPSADESVESF  161 (491)
T ss_pred             ceeeecCCCChhhhheeeccCcccccCCccccccc------ccccCcccchhHHHHHhhh--ccc-cCCCCCccccHHHH
Confidence              444332      245566777776654432211      0001111111222211110  000 00112347899999


Q ss_pred             HHHcCCCHHHHHHhhhhhhcccccCCccchHHHH-HHHHH---------------HHhh------------------cCC
Q 042352          194 LRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRL-FDFIF---------------KCLA------------------LGD  239 (445)
Q Consensus       194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~------------------~g~  239 (445)
                      +++ +|++++.+.+++|++.++|++++.+.|... +..++               ..+.                  ...
T Consensus       162 ~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~  240 (491)
T KOG1276|consen  162 ARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWT  240 (491)
T ss_pred             HHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccc
Confidence            988 599999999999999999999999887642 11111               1110                  113


Q ss_pred             CccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeC--CCceEEeccEEEEcCChhHHhhhcCCCc--
Q 042352          240 NTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLA--NGETLKSEIGVILAVEEPEADKLLRQPV--  313 (445)
Q Consensus       240 ~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~--~g~~i~a~~~VV~a~~~~~~~~ll~~p~--  313 (445)
                      ++-.+||++.+++++.+.|.  .+.|.++-++..|.....+.+.+++.  ++++..-.++++.|.|+..+.+|++...  
T Consensus       241 ~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~~s  320 (491)
T KOG1276|consen  241 MFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQNS  320 (491)
T ss_pred             hhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccchh
Confidence            55679999999999999996  77888999999987765554656654  4443222224666999999999998832  


Q ss_pred             ---ccCCCCCcceEEEEEeecCCC--CCCCCCeEEec--CCCCcceEEEEeecccCCCCCCCCceEEEEEecC----CCC
Q 042352          314 ---KFQRKPARSTVCLYFSADKDE--IPVQEPVLFLN--GSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG----LFA  382 (445)
Q Consensus       314 ---~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~----~~~  382 (445)
                         ++.+++++++..|++.|+++.  .|++.-.+.++  ......+.+++|+|...|.+.|.+++++.+...+    ...
T Consensus       321 ls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~  400 (491)
T KOG1276|consen  321 LSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLA  400 (491)
T ss_pred             hhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCC
Confidence               577889999999999998753  33433333344  2223357889999988888888775555443211    122


Q ss_pred             CCCChHHHHHHHHHHHhHhCCCc------CCCceE-eeEeecCCCCCC
Q 042352          383 DVMDDNLTAEVIRELSDWFGKST------VGSWRH-LRTYRVRFAQPN  423 (445)
Q Consensus       383 ~~~~~e~~~~~~~~l~~~~~~~~------~~~~~~-~~~~~~~~~~~~  423 (445)
                      ..+.+|+++.+.++|+++++...      ++-|.. +++|++||....
T Consensus       401 ~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~l  448 (491)
T KOG1276|consen  401 VPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVL  448 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHH
Confidence            34689999999999999998643      223332 677777775543

>PLN02568 polyamine oxidase

Probab=99.96  E-value=5.8e-28  Score=240.78  Aligned_cols=345  Identities=19%  Similarity=0.221  Sum_probs=202.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCC-----CCEEEEecCCCCCcceeeeccCCeeecccccchhcc-ChhHHHhhccc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQG-----RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA-YPEAQKLLDYN  118 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~-~~~~~~l~~~l  118 (445)
                      |++..||+|||||++||+||+.|++.|     ++|+|+|+++++||++.+.+..|+.+|.|++++.+. ...+.++++++
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~   81 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEA   81 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHh
Confidence            345689999999999999999999987     899999999999999999999999999999999864 45688999999


Q ss_pred             CCcceeec--C-----CcEEEe--CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhh------h--hhhhhhcchH-
Q 042352          119 ALNLQKFY--S-----GAKVYY--NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGL------T--RIRVLIKTDE-  180 (445)
Q Consensus       119 gl~~~~~~--~-----~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~-  180 (445)
                      |+......  .     ....++  +|..  ++..   ..+.+..+.   ..+.+......      .  .+..+..... 
T Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  153 (539)
T PLN02568         82 GSLESDEPWECMDGFPDRPKTVAEGGFE--VDPS---IVESISTLF---RGLMDDAQGKLIEPSEVDEVDFVKLAAKAAR  153 (539)
T ss_pred             CCccccCcceecccccccceEEccCCcC--CCHH---HHHHHHHHH---HHHHHHhhcccccccccccccccccchhccc
Confidence            88432210  0     001111  1110  1000   000000000   00000000000      0  0000000000 


Q ss_pred             HHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHH-HHHHHHHH-----------------H-----hhc
Q 042352          181 QILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSS-RLFDFIFK-----------------C-----LAL  237 (445)
Q Consensus       181 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~-----~~~  237 (445)
                      ....-.+.++.+|+++. ++. .+..+.++...+.+.......+. ..+..+..                 .     ...
T Consensus       154 ~~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~  231 (539)
T PLN02568        154 VCESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFP  231 (539)
T ss_pred             hhccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecC
Confidence            00011234888888752 222 22222233333333333222111 01100000                 0     012


Q ss_pred             CCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh------hcCC
Q 042352          238 GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK------LLRQ  311 (445)
Q Consensus       238 g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~------ll~~  311 (445)
                      |..+.+.||++.|+++|++.+++.+|++|++|++|..++++ +.|++.+|+++.|+ +||+|+|+..+++      +..+
T Consensus       232 g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD-~VIvTvPl~vL~~~~~~~~i~F~  309 (539)
T PLN02568        232 GEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEP-VKLHFADGSTMTAD-HVIVTVSLGVLKAGIGEDSGLFS  309 (539)
T ss_pred             CCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcC-EEEEcCCHHHHhhccccccceec
Confidence            34667899999999999999976689999999999988765 77889999889998 7999999999874      2233


Q ss_pred             C---c----ccCCCCCcceEEEEEeecCCCCCCCC-----CeEEec-CCCCcce---EEEEeec---ccCCCCCCCCceE
Q 042352          312 P---V----KFQRKPARSTVCLYFSADKDEIPVQE-----PVLFLN-GSGKGIV---NNMFFAT---NVAPLYGPLDKAL  372 (445)
Q Consensus       312 p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~-~~~~~~~---~~~~~~s---~~~p~~~p~g~~~  372 (445)
                      |   +    +++.+.+....++++.|+++||....     ..+.+. .......   ....|..   ...+.  ..+..+
T Consensus       310 P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v  387 (539)
T PLN02568        310 PPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI--HKNSSV  387 (539)
T ss_pred             CCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc--CCCCCE
Confidence            3   2    45677888999999999999864311     111111 1000000   0000100   01111  124566


Q ss_pred             EEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352          373 ISVSLIGL----FADVMDDNLTAEVIRELSDWFGK  403 (445)
Q Consensus       373 l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~  403 (445)
                      |..++.+.    +..++++++++.+++.|+++||.
T Consensus       388 L~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~  422 (539)
T PLN02568        388 LLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKR  422 (539)
T ss_pred             EEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCC
Confidence            66665554    56789999999999999999974

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.96  E-value=2.5e-28  Score=227.27  Aligned_cols=374  Identities=16%  Similarity=0.107  Sum_probs=227.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF  125 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~  125 (445)
                      +...||||||||++||+||+.|.|.|++|+|+|+++++|||+.+.+..|...|.|++++.+.++.+..+.+++|+...++
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~f   84 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPF   84 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCce
Confidence            45689999999999999999999999999999999999999999988889999999999998888999999999998876


Q ss_pred             cC--CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHh--hhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCH
Q 042352          126 YS--GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIG--LTRIRVLIKTDEQILTSSEVPIIELLRNIGFSD  201 (445)
Q Consensus       126 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  201 (445)
                      ..  ...+.+.+.....+.........   +..   ........+  ...+......  ...+.+.+++.+| .  ..+ 
T Consensus        85 i~~g~~~~~~~~~~~~~p~~~~~~~~d---~~~---~~~~~~~~a~~~~~~~~~~t~--~~~e~~~~~~~~W-~--~~~-  152 (450)
T COG1231          85 IRDGDNVIGYVGSSKSTPKRSLTAAAD---VRG---LVAELEAKARSAGELDPGLTP--EDRELDLESLAAW-K--TSS-  152 (450)
T ss_pred             eccCcccccccccccccchhccchhhh---hcc---hhhhhhhhhhcccccCcccCc--chhhhhhHHHHhh-h--hcc-
Confidence            54  22222222222111100000000   000   000000000  0000000000  0112233455555 0  000 


Q ss_pred             HHHHHhhhhhhccc-cc-CCccchH---HHHHHHHHH-------HhhcCCCccccCccccHHHHHHhcCCCCcEEeCcee
Q 042352          202 SIIDSFFRPFFGGI-FF-DKELETS---SRLFDFIFK-------CLALGDNTIPANGICQIPNQIASKLPFESILLNTRV  269 (445)
Q Consensus       202 ~~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~-------~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V  269 (445)
                        .+.+-.+....+ ++ .+..+.+   .........       ......++.+.|||+.|++++++.+ |..|+++.+|
T Consensus       153 --~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql-~~~I~~~~~V  229 (450)
T COG1231         153 --LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQL-GTRILLNEPV  229 (450)
T ss_pred             --ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHh-hceEEecCce
Confidence              001101111111 11 1111111   011111111       1111235566799999999999999 7899999999


Q ss_pred             eEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCC-C-
Q 042352          270 LSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQE-P-  340 (445)
Q Consensus       270 ~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~-  340 (445)
                      .+|.+++++ |.|++.+..++++| .||||+|+.++.++..+|.       +.....+.+.+++.+.|+++||.... . 
T Consensus       230 ~rI~q~~~g-V~Vt~~~~~~~~ad-~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~  307 (450)
T COG1231         230 RRIDQDGDG-VTVTADDVGQYVAD-YVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILG  307 (450)
T ss_pred             eeEEEcCCe-EEEEeCCcceEEec-EEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCC
Confidence            999999877 78999884579998 6999999999988877753       34557899999999999999975443 1 


Q ss_pred             eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEe-cCC----CCCCCChHHHHHHHHHHHhHhCCCc--------CC
Q 042352          341 VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSL-IGL----FADVMDDNLTAEVIRELSDWFGKST--------VG  407 (445)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~-~~~----~~~~~~~e~~~~~~~~l~~~~~~~~--------~~  407 (445)
                      ...+.+.   .+..++++|. ..   .+|..+|..++ .+.    +..+++++.++.++..+.++||+..        ..
T Consensus       308 G~~~tD~---~~~~i~~~s~-~~---~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~  380 (450)
T COG1231         308 GESLTDL---GLGFISYPSA-PF---ADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASV  380 (450)
T ss_pred             ceEeecC---CcceEecCcc-cc---CCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceee
Confidence            1122222   2445667766 22   24555655533 232    6678999999999999999999542        34


Q ss_pred             CceEeeEeecCCCCCCCCCCCCC-CCCCcccCCCCeeeC
Q 042352          408 SWRHLRTYRVRFAQPNQSPPTDL-IKNPKSEFSLAVYLC  445 (445)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~t~~~g~~~~  445 (445)
                      +|. -..|.-| ......||+.. .-|-...|...+++|
T Consensus       381 ~W~-~dpwt~G-~~aa~~~g~~~~~~~~l~~p~gRIh~A  417 (450)
T COG1231         381 DWS-KDPWTLG-GTAAYPPGQRTKLYPTLPAPHGRIHFA  417 (450)
T ss_pred             ecc-cCCcCCc-cccccCCcccccccccccCCCCceEEe
Confidence            554 2334445 34445555532 233333344445543

>PLN02676 polyamine oxidase

Probab=99.96  E-value=3.5e-27  Score=233.70  Aligned_cols=371  Identities=16%  Similarity=0.190  Sum_probs=217.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcceeeeccCCeeecccccchhc----cChhHHHhhcccCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT----AYPEAQKLLDYNALN  121 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lgl~  121 (445)
                      ..+||+|||||++||+||+.|+++|. +|+|+|+++++||++.+...+|+.+|.|++|+..    ....+.++++++|+.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~  104 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLR  104 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCc
Confidence            45799999999999999999999998 6999999999999999999999999999999854    345677888988887


Q ss_pred             ceeec-C--CcEEE-eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcH--HHHHH
Q 042352          122 LQKFY-S--GAKVY-YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPI--IELLR  195 (445)
Q Consensus       122 ~~~~~-~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~  195 (445)
                      ..... .  ...++ .+|+...        ......+.    ...+.+......+...    ......++.++  .+++.
T Consensus       105 ~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~  168 (487)
T PLN02676        105 TFYSDFDNLSSNIYKQDGGLYP--------KKVVQKSM----KVADASDEFGENLSIS----LSAKKAVDISILTAQRLF  168 (487)
T ss_pred             eeecCccccceeEECCCCCCCC--------HHHHHHHH----HHHHHHHHHHHHHHHh----hcccCCCCccHHHHHHHH
Confidence            55321 1  11122 1232220        00000000    0000100000000000    00112344555  33343


Q ss_pred             HcC-CC-HHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh-h-cCCCccc--cCccccHHHHHHhcCC--------CC
Q 042352          196 NIG-FS-DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL-A-LGDNTIP--ANGICQIPNQIASKLP--------FE  261 (445)
Q Consensus       196 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~--~gG~~~l~~~l~~~l~--------g~  261 (445)
                      +.. .. ......++.  ....++.++.+.+...+.. ...+ . .+..+..  .+|+++|+++|++.+.        +.
T Consensus       169 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~~-~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~  245 (487)
T PLN02676        169 GQVPKTPLEMVIDYYN--YDYEFAEPPRVTSLKNTEP-NPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDP  245 (487)
T ss_pred             hhCCCCHHHHHHHHHh--ccceeccCccccchhhcCc-ccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCC
Confidence            321 01 111111111  0111444544444332110 0111 1 1223344  6899999999998762        26


Q ss_pred             cEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCCCc-------ccCCCCCcceEEEEEeecC
Q 042352          262 SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQPV-------KFQRKPARSTVCLYFSADK  332 (445)
Q Consensus       262 ~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~p~-------~~~~~~~~~~~~v~~~~~~  332 (445)
                      +|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|+..+++  +...|+       +++...+....|+++.|++
T Consensus       246 ~I~l~~~V~~I~~~~~g-V~V~~~~G~~~~a~-~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~  323 (487)
T PLN02676        246 RLKLNKVVREISYSKNG-VTVKTEDGSVYRAK-YVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPY  323 (487)
T ss_pred             ceecCCEeeEEEEcCCc-EEEEECCCCEEEeC-EEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCC
Confidence            79999999999998765 78999999889998 7999999999875  544443       3456778889999999999


Q ss_pred             CCCCCCC--CeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc-
Q 042352          333 DEIPVQE--PVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST-  405 (445)
Q Consensus       333 ~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~-  405 (445)
                      +||+...  ......+...+..  ..+.+ .+.  .+++..++.+.+.++    +..+++++.++.++++|+++||... 
T Consensus       324 ~FW~~~~~~~~~~~~~~~~~~~--~~~~~-~~~--~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~  398 (487)
T PLN02676        324 KFWPSGPGTEFFLYAHERRGYY--PFWQH-LEN--EYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIP  398 (487)
T ss_pred             CCCCCCCCceeeeeeccccccc--hhhhh-ccc--CCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCC
Confidence            9975321  1111111100100  01111 111  123444555554443    4568899999999999999998432 


Q ss_pred             ------CCCceEeeEeecCCCCCCCCCCCCC-CCCCcccCCCCeeeC
Q 042352          406 ------VGSWRHLRTYRVRFAQPNQSPPTDL-IKNPKSEFSLAVYLC  445 (445)
Q Consensus       406 ------~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~t~~~g~~~~  445 (445)
                            ..+|...+-.+.+|+.  ..||... .++.-..|+..||+|
T Consensus       399 ~p~~~~~~~W~~dp~s~Gsys~--~~pG~~~~~~~~L~~P~gri~FA  443 (487)
T PLN02676        399 EATDILVPRWWSNRFFKGSYSN--WPIGVSRYEFDQIRAPVGRVYFT  443 (487)
T ss_pred             CcceEEecccCCCCCCCcccCC--CCCCCChhHHHHHhCCCCceEEe
Confidence                  3466654444444443  3466532 223334566678876

>PLN03000 amine oxidase

Probab=99.96  E-value=1.4e-26  Score=235.73  Aligned_cols=368  Identities=17%  Similarity=0.161  Sum_probs=216.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC----CeeecccccchhccCh-hHHHhhcccCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD----GFLLDRGFQIFITAYP-EAQKLLDYNALN  121 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~-~~~~l~~~lgl~  121 (445)
                      ...||+|||||++||+||+.|++.|++|+|+|+++++||++.+.+..    ++.+|+|++|+.+... .+..+++++|+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~  262 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSS  262 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCc
Confidence            45899999999999999999999999999999999999999998764    4789999999987654 455678999988


Q ss_pred             ceeecCCcE-EEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH----
Q 042352          122 LQKFYSGAK-VYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN----  196 (445)
Q Consensus       122 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~----  196 (445)
                      +........ +..+|+....  ....   .....       ...+......+......     ...+.++.++++.    
T Consensus       263 l~~~~~~~~ly~~~Gk~v~~--~~~~---~ve~~-------fn~lLd~~~~lr~l~~~-----~~~D~SLg~aLe~~~~~  325 (881)
T PLN03000        263 LYKVRDKCPLYRVDGKPVDP--DVDL---KVEVA-------FNQLLDKASKLRQLMGD-----VSMDVSLGAALETFRQV  325 (881)
T ss_pred             eeecCCCCeEEEeCCcCCch--hhhh---hHHHH-------HHHHHHHHHHHHHHhcc-----cCcCCcHHHHHHHHHHH
Confidence            665443333 3344543210  0000   00000       01111001111110000     0113344433321    


Q ss_pred             --cCCCHHHHHHhhhhhhccc---ccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeE
Q 042352          197 --IGFSDSIIDSFFRPFFGGI---FFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLS  271 (445)
Q Consensus       197 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~  271 (445)
                        ..+.++. ..++...+..+   ++......+...+.........+.++.+.||++.|+++|++.+   .|++|++|++
T Consensus       326 ~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L---~I~Ln~~Vt~  401 (881)
T PLN03000        326 SGNDVATEE-MGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENV---PILYEKTVQT  401 (881)
T ss_pred             HcccCCHHH-HHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhC---CcccCCcEEE
Confidence              1122211 11112111111   1122112221111100001123457778999999999999987   4999999999


Q ss_pred             EEecCCCcCeEEeCCCceEEeccEEEEcCChhHHh--hhc--CC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeE
Q 042352          272 IDFDEQNMPNVRLANGETLKSEIGVILAVEEPEAD--KLL--RQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVL  342 (445)
Q Consensus       272 I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~--~ll--~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  342 (445)
                      |++++++ +.|++.+ ++++|| +||+|+|+.+++  .+.  ++ |+    +++.+.+....+|++.|+++||......+
T Consensus       402 I~~~~dg-V~V~~~~-~~~~AD-~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~F  478 (881)
T PLN03000        402 IRYGSNG-VKVIAGN-QVYEGD-MVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTF  478 (881)
T ss_pred             EEECCCe-EEEEECC-cEEEec-eEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCce
Confidence            9998765 6677654 479998 799999999998  333  33 33    56788899999999999999975432222


Q ss_pred             -EecCCCCcceEEEEeecccCCCCCC-CCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCC----------cC
Q 042352          343 -FLNGSGKGIVNNMFFATNVAPLYGP-LDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKS----------TV  406 (445)
Q Consensus       343 -~~~~~~~~~~~~~~~~s~~~p~~~p-~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~----------~~  406 (445)
                       .+............+.+     +.| .|..+|.++..++    +..++++++++.++++|+++|+..          .+
T Consensus       479 G~l~~~~~~rg~~~~f~s-----~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~iv  553 (881)
T PLN03000        479 GHLTEDPNYRGEFFLFYS-----YAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVC  553 (881)
T ss_pred             eEEecCCCCCceeEEEeC-----CCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEE
Confidence             22211111111122322     222 4556777666554    567899999999999999999731          14


Q ss_pred             CCceEeeEeecCCCCCCCCCCCCC-CCCCcccCC--CCeeeC
Q 042352          407 GSWRHLRTYRVRFAQPNQSPPTDL-IKNPKSEFS--LAVYLC  445 (445)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~t~~--~g~~~~  445 (445)
                      .+|...+-.+.+|+..  .||+.. .+..-..|+  ..||+|
T Consensus       554 trW~~DPysrGSYS~~--~pG~~~~~~d~LaePv~~GRIfFA  593 (881)
T PLN03000        554 TRWGGDPFSLGSYSNV--AVGASGDDYDILAESVGDGRLFFA  593 (881)
T ss_pred             ccCCCCCCCCccccCC--CCCCchHHHHHHhCcCCCCcEEEe
Confidence            6666544444444443  466532 111112333  357775

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.96  E-value=8.5e-27  Score=237.57  Aligned_cols=331  Identities=21%  Similarity=0.190  Sum_probs=200.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCC----eeecccccchhccCh-hHHHhhcccCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG----FLLDRGFQIFITAYP-EAQKLLDYNAL  120 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g----~~~d~G~~~~~~~~~-~~~~l~~~lgl  120 (445)
                      ....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....|    ..+|+|++++.+... .+..+++++|+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl  315 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGL  315 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCC
Confidence            3568999999999999999999999999999999999999999988765    368999999987543 46778899998


Q ss_pred             cceeecCCcEEE-eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHc--
Q 042352          121 NLQKFYSGAKVY-YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNI--  197 (445)
Q Consensus       121 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~--  197 (445)
                      +.........++ .+|.....  .......   .+       ..++......+...   ........+.|+.+++++.  
T Consensus       316 ~~~~~~~~~~~~~~dG~~~~~--~~~~~v~---~~-------f~~lL~~~~klr~~---~~~~~~~~D~SLg~~le~~~~  380 (808)
T PLN02328        316 PLHKVRDICPLYLPDGKAVDA--EIDSKIE---AS-------FNKLLDRVCKLRQA---MIEEVKSVDVNLGTALEAFRH  380 (808)
T ss_pred             ceEecCCCceEEeCCCcCcch--hhhhhHH---HH-------HHHHHHHHHHHHHh---hhhcccccCcCHHHHHHHHhh
Confidence            776554433333 33332211  0000000   00       01111100111000   0000112356888888632  


Q ss_pred             --CC-CHHHHHHhhhhhhccc---ccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeE
Q 042352          198 --GF-SDSIIDSFFRPFFGGI---FFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLS  271 (445)
Q Consensus       198 --~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~  271 (445)
                        +. .......++...+..+   ++......+...+.........+.++.+.||++.|+++|++.+   .|++|++|++
T Consensus       381 ~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L---~I~ln~~V~~  457 (808)
T PLN02328        381 VYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDL---PIFYERTVES  457 (808)
T ss_pred             hhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhC---CcccCCeeEE
Confidence              11 1111122222222111   1111111111111000001112457778999999999999987   4999999999


Q ss_pred             EEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh----hcCC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeE
Q 042352          272 IDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK----LLRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVL  342 (445)
Q Consensus       272 I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~----ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  342 (445)
                      |...+++ +.| +.+|+++.|| +||+|+|+.++++    +.++ |+    +++.+.+..+.++++.|+++||......+
T Consensus       458 I~~~~dg-V~V-~~~G~~~~AD-~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~f  534 (808)
T PLN02328        458 IRYGVDG-VIV-YAGGQEFHGD-MVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTF  534 (808)
T ss_pred             EEEcCCe-EEE-EeCCeEEEcC-EEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCce
Confidence            9998765 455 4578789998 7999999999873    3333 33    56788999999999999999865332221


Q ss_pred             -EecCC--CCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352          343 -FLNGS--GKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGK  403 (445)
Q Consensus       343 -~~~~~--~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~  403 (445)
                       ++...  ..+.+  ..+.+..    .+.|..++..+..+.    +.+++++++++.++++|+++|+.
T Consensus       535 G~l~~d~s~rG~~--~lf~s~s----~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp  596 (808)
T PLN02328        535 GHLTEDPSMRGEF--FLFYSYS----SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHP  596 (808)
T ss_pred             EEEeecCCCCceE--EEEecCC----CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCc
Confidence             22211  11111  2222211    123556777766554    44678899999999999999974

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.96  E-value=3.1e-27  Score=219.61  Aligned_cols=345  Identities=21%  Similarity=0.279  Sum_probs=211.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcceeeeccCCeeecccccchhc-cChhHHHhhcccC-Ccc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT-AYPEAQKLLDYNA-LNL  122 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lg-l~~  122 (445)
                      ....+|+|||||+|||+||..|.+.|. +|+|+|+.+++|||++++...+-.+|+|++|+++ ....+.++.++.| +..
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~   98 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKL   98 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccce
Confidence            345689999999999999999997765 8999999999999999999988899999999998 5667889988776 222


Q ss_pred             ee-----ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh-hhcchHH-HhcCCCCcHHHHHH
Q 042352          123 QK-----FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV-LIKTDEQ-ILTSSEVPIIELLR  195 (445)
Q Consensus       123 ~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~s~~~~l~  195 (445)
                      ..     ..+......+|+....        .               ....+..+.. ......+ ....+..|+++++.
T Consensus        99 ~~~tg~~~~~~~~~~~~g~~V~~--------~---------------~~~~~~~~~~~~~~~~r~~~~~~~~~SvG~~ln  155 (498)
T KOG0685|consen   99 LEVTGPAYVDNFHTRSNGEVVPE--------E---------------LLDELNEITVTLSDKLREAEIAHDEGSVGEYLN  155 (498)
T ss_pred             eccCCccccceeEEEecCccCcH--------H---------------HHHHHHHHHHhhhhhcccccccCccccHHHHHH
Confidence            11     1111122233332211        1               1111111100 0000000 01134456666665


Q ss_pred             HcC-----C------CHHHHHHhhhhhhc---ccccC-CccchHHHHHHHHHHHhhcC--CCccccCccccHHHHHHhcC
Q 042352          196 NIG-----F------SDSIIDSFFRPFFG---GIFFD-KELETSSRLFDFIFKCLALG--DNTIPANGICQIPNQIASKL  258 (445)
Q Consensus       196 ~~~-----~------~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~g--~~~~~~gG~~~l~~~l~~~l  258 (445)
                      ..-     .      .......++..+..   ...+. +..+++...+.  ......|  .......|+..+.+.|++.+
T Consensus       156 ~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~--ey~~~~ge~~~~~~~kGy~~iL~~l~~~~  233 (498)
T KOG0685|consen  156 SEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALL--EYTECPGEELLIWNKKGYKRILKLLMAVI  233 (498)
T ss_pred             HHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhcc--ceeecCchhhheechhHHHHHHHHHhccC
Confidence            310     0      01112222222221   12222 22222221111  0111122  34455778999999999988


Q ss_pred             CCCc--------EEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh----hcCC--Cc----ccCCCCC
Q 042352          259 PFES--------ILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK----LLRQ--PV----KFQRKPA  320 (445)
Q Consensus       259 ~g~~--------i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~----ll~~--p~----~~~~~~~  320 (445)
                      +...        +++|++|.+|+.++.+.+.|++.||+.+.|| |||||++..++++    |+.+  |.    +++.+..
T Consensus       234 p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~ad-hVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgf  312 (498)
T KOG0685|consen  234 PAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHAD-HVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGF  312 (498)
T ss_pred             CCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEecc-EEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccC
Confidence            6444        4455999999999777799999999999998 8999999999866    6665  33    5778889


Q ss_pred             cceEEEEEeecCCCCCCCCCe---EEecCCCC---c----ceEE--EEeecccCCCCCCCCceEEEEEecCC----CCCC
Q 042352          321 RSTVCLYFSADKDEIPVQEPV---LFLNGSGK---G----IVNN--MFFATNVAPLYGPLDKALISVSLIGL----FADV  384 (445)
Q Consensus       321 ~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~---~----~~~~--~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~  384 (445)
                      .+..++++.|.++|||.+-..   ++..+...   .    +...  .+.+...    .|   ++|...+.|.    ++.+
T Consensus       313 Gtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~----~~---~vL~gWiaG~~~~~me~l  385 (498)
T KOG0685|consen  313 GTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW----AP---NVLLGWIAGREARHMETL  385 (498)
T ss_pred             CccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc----ch---hhhheeccCCcceehhhC
Confidence            999999999999997754332   33333310   0    1111  1222221    12   5555555443    5688


Q ss_pred             CChHHHHHHHHHHHhHhCCCc--------CCCceEeeEeecCCCCCC
Q 042352          385 MDDNLTAEVIRELSDWFGKST--------VGSWRHLRTYRVRFAQPN  423 (445)
Q Consensus       385 ~~~e~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~  423 (445)
                      +++++.+.+...|++++++..        -..|..-+.+|..|++..
T Consensus       386 sdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~s  432 (498)
T KOG0685|consen  386 SDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRS  432 (498)
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEee
Confidence            999999999999999998643        355665555665555543

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=3e-26  Score=224.41  Aligned_cols=337  Identities=21%  Similarity=0.259  Sum_probs=195.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCee-ecccccchhccCh-hHHHhhcccCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFL-LDRGFQIFITAYP-EAQKLLDYNALNLQ  123 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~-~~~~l~~~lgl~~~  123 (445)
                      .+.++|||||||+|||+||.+|.+.|++|+|||+.+++|||++|+...+.. +|+|++++.+.+. .+.-+.+++|++..
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~   92 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELY   92 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccc
Confidence            456799999999999999999999999999999999999999999876554 9999999998776 67777888999876


Q ss_pred             eecCCcEEEeC-CeeE-eccCC-----ccchHHHHHhhcCCcc----ch-HHHHHHhhhhhhhhhcchHHHhcCCCCcHH
Q 042352          124 KFYSGAKVYYN-GQFH-TVADP-----FRHFWDSIKSLANPIG----SV-LDKLLIGLTRIRVLIKTDEQILTSSEVPII  191 (445)
Q Consensus       124 ~~~~~~~~~~~-g~~~-~~~~~-----~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  191 (445)
                      .......++.. +... ...+.     ....+.....+.....    .. .+.+..+...+...       ..  .....
T Consensus        93 ~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~--~~~~~  163 (501)
T KOG0029|consen   93 KVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSA-------SR--LMKTL  163 (501)
T ss_pred             eecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHH-------HH--HHHhh
Confidence            64444333322 2111 00000     0000000000000000    00 00000000000000       00  00111


Q ss_pred             HHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhc-CCCccccCccccHHHHHHhcCCCCcEEeCceee
Q 042352          192 ELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLAL-GDNTIPANGICQIPNQIASKLPFESILLNTRVL  270 (445)
Q Consensus       192 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~  270 (445)
                      .+++.++.........+..+. ..+.......+...+ .....+.. +.+....+|+..++..+++   |..|+++..|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~G~~~v~~~la~---~l~I~~~~~v~  238 (501)
T KOG0029|consen  164 LELLLEGEADKVLQWHLVNLE-LTFIAHLENASARLW-DQDELFGGGGIHLLMKGGYEPVVNSLAE---GLDIHLNKRVR  238 (501)
T ss_pred             HHHhhhhhhhHHHHHHHHHHH-HHhhccHhHhhHHhh-hhhhhcccccchhHhhCCccHHHhhcCC---CcceeeceeeE
Confidence            111222211121222221111 111111111111111 11122222 2457789999999999998   56999999999


Q ss_pred             EEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCe
Q 042352          271 SIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPV  341 (445)
Q Consensus       271 ~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~  341 (445)
                      +|.+.+++.+.+++.++..+.+| .||+++|..+++.  +...|+       +++........++.+.|++.||..+..+
T Consensus       239 ~i~~~~~~~~~~~~~~~~~~~~d-~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~  317 (501)
T KOG0029|consen  239 KIKYGDDGAVKVTVETGDGYEAD-AVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDF  317 (501)
T ss_pred             EEEEecCCceEEEEECCCeeEee-EEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCe
Confidence            99999877556776777668998 6999999999866  444443       4567788889999999999997533333


Q ss_pred             EE-ecCCCCcceEEE-EeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352          342 LF-LNGSGKGIVNNM-FFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGK  403 (445)
Q Consensus       342 ~~-~~~~~~~~~~~~-~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~  403 (445)
                      .. .+...  ..... .+.+- .|..   +..++.....+.    +..++++++++.++..|+++|+.
T Consensus       318 fg~~~~~~--~~~~~~~f~~~-~~~~---~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~  379 (501)
T KOG0029|consen  318 FGIVPETS--VLRGLFTFYDC-KPVA---GHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGS  379 (501)
T ss_pred             EEEccccc--cccchhhhhhc-CccC---CCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhcc
Confidence            22 22211  11110 11111 1111   222344333332    56789999999999999999994

>PLN02976 amine oxidase

Probab=99.95  E-value=1.3e-25  Score=234.24  Aligned_cols=373  Identities=17%  Similarity=0.170  Sum_probs=212.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-CCeeecccccchhccCh--------h-HHHhhc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAYP--------E-AQKLLD  116 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~--------~-~~~l~~  116 (445)
                      ..+||+|||||++|+++|+.|.+.|++|+|||+++.+||++.+... .|+.+|+|++++.+...        + ...+++
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~  771 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA  771 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence            3589999999999999999999999999999999999999998764 57889999998876321        2 223577


Q ss_pred             ccCCcceeecCCcEEE--eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH
Q 042352          117 YNALNLQKFYSGAKVY--YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL  194 (445)
Q Consensus       117 ~lgl~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l  194 (445)
                      .+|+...........+  .+|...  +      .+....+......+.+....       .....  -....++++.++|
T Consensus       772 qlGl~l~~~~~~~~~yd~~~G~~V--~------~e~~~~v~~~fn~lld~~~~-------~~~~~--g~~a~d~SLgd~L  834 (1713)
T PLN02976        772 QLGLELTVLNSDCPLYDVVTGEKV--P------ADLDEALEAEYNSLLDDMVL-------LVAQK--GEHAMKMSLEDGL  834 (1713)
T ss_pred             hcCCccccccCCCceeEccCCcCC--C------HHHHHHHHHHHHHHHHHHHH-------HHhhc--ccCccCCCHHHHH
Confidence            7888765443222211  122211  0      00000000000000000000       00000  0001123344433


Q ss_pred             HHcC------------------------------------CC--------HHHHHHhhhhhhccc---ccCCccchHHHH
Q 042352          195 RNIG------------------------------------FS--------DSIIDSFFRPFFGGI---FFDKELETSSRL  227 (445)
Q Consensus       195 ~~~~------------------------------------~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~  227 (445)
                      +...                                    ..        ....+.++.-.+...   ++.+..+++...
T Consensus       835 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~  914 (1713)
T PLN02976        835 EYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPY  914 (1713)
T ss_pred             HHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhh
Confidence            3100                                    00        000011111111111   123333333332


Q ss_pred             HHHHHHH-hhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecC---------CCcCeEEeCCCceEEeccEEE
Q 042352          228 FDFIFKC-LALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE---------QNMPNVRLANGETLKSEIGVI  297 (445)
Q Consensus       228 ~~~~~~~-~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~---------~~~~~V~~~~g~~i~a~~~VV  297 (445)
                      +.....+ ...|..+.+.||++.|+++|++.+   .|++|++|++|.+.+         +..+.|++.+|++++|+ +||
T Consensus       915 ~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L---~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftAD-aVI  990 (1713)
T PLN02976        915 WNQDDVYGGFGGAHCMIKGGYSNVVESLAEGL---DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGD-AVL  990 (1713)
T ss_pred             hhcccccccCCCceEEeCCCHHHHHHHHHhhC---CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEec-eEE
Confidence            2100000 013456778999999999999976   599999999999852         23478889999889998 799


Q ss_pred             EcCChhHHh--hhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCCCCCCC
Q 042352          298 LAVEEPEAD--KLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPL  368 (445)
Q Consensus       298 ~a~~~~~~~--~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~  368 (445)
                      +|+|+.++.  .+...|+       +++.+.+....++++.|+++||+....++....... .....++.  .++...+.
T Consensus       991 VTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edt-dlrG~~~~--~wnlr~ps 1067 (1713)
T PLN02976        991 ITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEET-DLRGQCFM--FWNVKKTV 1067 (1713)
T ss_pred             EeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccC-CCCceEEE--eccCCCCC
Confidence            999999986  3444443       356778888999999999999764333322111100 01111122  12222344


Q ss_pred             CceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc--------CCCceEeeEeecCCCCCCCCCCCCC-CCCCc
Q 042352          369 DKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST--------VGSWRHLRTYRVRFAQPNQSPPTDL-IKNPK  435 (445)
Q Consensus       369 g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~  435 (445)
                      |..+|..++.+.    +..++++++++.+++.|+++||...        ..+|...+-.+..|+  ...||... .+..-
T Consensus      1068 G~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYS--y~~PGs~~~d~d~L 1145 (1713)
T PLN02976       1068 GAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYS--YVAIGASGEDYDIL 1145 (1713)
T ss_pred             CCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCcccc--CCCCCCCchHHHHH
Confidence            556666665553    4568899999999999999999532        456665444444443  33566532 12223


Q ss_pred             ccCCCC-eeeC
Q 042352          436 SEFSLA-VYLC  445 (445)
Q Consensus       436 ~t~~~g-~~~~  445 (445)
                      ..|+.| ||+|
T Consensus      1146 AePVggRLFFA 1156 (1713)
T PLN02976       1146 GRPVENCLFFA 1156 (1713)
T ss_pred             hCCCCCcEEEE
Confidence            345555 8776

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.95  E-value=5.3e-26  Score=202.31  Aligned_cols=282  Identities=18%  Similarity=0.249  Sum_probs=198.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec----cCCeeecccccchhc-cChhHHHhhcccCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS----VDGFLLDRGFQIFIT-AYPEAQKLLDYNALN  121 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~  121 (445)
                      .+.+|+|||+|++|||||+.|+++ ++||++|++.++||++.|..    -+|+.+|.|...++. .||++..|++++|++
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~   85 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD   85 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence            356899999999999999999987 89999999999999999984    346789999998887 899999999999998


Q ss_pred             ceeecCCcEEEeC-CeeEeccCCccchHH-HHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352          122 LQKFYSGAKVYYN-GQFHTVADPFRHFWD-SIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF  199 (445)
Q Consensus       122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~  199 (445)
                      .+...-.-.+..+ |.++.-..+....+. ....+..+   -.-.+.+.+.++..............+.++.+||++.++
T Consensus        86 t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~p---Rf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f  162 (447)
T COG2907          86 TKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRP---RFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRNF  162 (447)
T ss_pred             CcccceeEEEEecCCceeeccCCCccchhhccccccch---hHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhcCc
Confidence            7653222222222 323222111111110 00001011   112223333443332222222334568899999999999


Q ss_pred             CHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhh---------cCCCccccCccccHHHHHHhcCCCCcEEeCceee
Q 042352          200 SDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLA---------LGDNTIPANGICQIPNQIASKLPFESILLNTRVL  270 (445)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~  270 (445)
                      +..+.+.++.|+..++|+++..+........++..+.         ...+..+.||....++.|.+.+ +++|+++++|.
T Consensus       163 ~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~-~~~i~t~~~V~  241 (447)
T COG2907         163 GRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADI-RGRIETRTPVC  241 (447)
T ss_pred             cHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccc-cceeecCCcee
Confidence            9999999999999999999988776654444333221         2246678999999999999988 67999999999


Q ss_pred             EEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-----ccCCCCCcceEEEEEeecCCCCC
Q 042352          271 SIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-----KFQRKPARSTVCLYFSADKDEIP  336 (445)
Q Consensus       271 ~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-----~~~~~~~~~~~~v~~~~~~~~~~  336 (445)
                      +|..-.++ +.|...+|++-+.| +||+|+-++.+..||++|.     .+..+.|.....++.. |..+.|
T Consensus       242 ~l~rlPdG-v~l~~~~G~s~rFD-~vViAth~dqAl~mL~e~sp~e~qll~a~~Ys~n~aVlht-d~~lmP  309 (447)
T COG2907         242 RLRRLPDG-VVLVNADGESRRFD-AVVIATHPDQALALLDEPSPEERQLLGALRYSANTAVLHT-DASLMP  309 (447)
T ss_pred             eeeeCCCc-eEEecCCCCccccc-eeeeecChHHHHHhcCCCCHHHHHHHHhhhhhhceeEEee-cccccc
Confidence            99988876 55666779876676 7999999999999999953     4555666666655543 443333

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.94  E-value=2.5e-26  Score=227.89  Aligned_cols=379  Identities=25%  Similarity=0.298  Sum_probs=204.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--CeeecccccchhccChhHHHhhcccCCc--ceeec--CCcEE
Q 042352           58 LAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--GFLLDRGFQIFITAYPEAQKLLDYNALN--LQKFY--SGAKV  131 (445)
Q Consensus        58 ~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g~~~d~G~~~~~~~~~~~~~l~~~lgl~--~~~~~--~~~~~  131 (445)
                      ||||+||++|+++|++|+|||+++++||+++|++.+  |+.+|.|+++|...++.+..+++++++.  .....  .....
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   80 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFV   80 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEE
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceee
Confidence            699999999999999999999999999999999998  9999999999988778888888887764  22211  11111


Q ss_pred             EeCCe--eEec-cCCccchHHHH---Hhh--cCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHH
Q 042352          132 YYNGQ--FHTV-ADPFRHFWDSI---KSL--ANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI  203 (445)
Q Consensus       132 ~~~g~--~~~~-~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~  203 (445)
                      .....  .... ...........   ...  .........+..........  ............++.+++....+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (450)
T PF01593_consen   81 YWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFN--KAEPEFLEDDLESFLEFLDSQSFSEIF  158 (450)
T ss_dssp             EEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccccccccccccccccccchhhhhhccccccccccccchhccchhhhh--hhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence            11111  1100 00011100000   000  00000000000000000000  001111111223444544433222222


Q ss_pred             HHHhhhhhhcccccCCccchHHHHHHHHHH---------HhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEe
Q 042352          204 IDSFFRPFFGGIFFDKELETSSRLFDFIFK---------CLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDF  274 (445)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~  274 (445)
                      ...++.+.............+.........         ....+......|+...+.+.+.+.+ |++|++|++|++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-g~~i~l~~~V~~I~~  237 (450)
T PF01593_consen  159 RESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEEL-GGEIRLNTPVTRIER  237 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHH-GGGEESSEEEEEEEE
T ss_pred             HHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhc-CceeecCCcceeccc
Confidence            221222332222222222222222111111         1111222334555566666665555 779999999999999


Q ss_pred             cCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCC-Cc----ccCCCCCcceEEEEEeecCCCCCCC--CCeEEec
Q 042352          275 DEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQ--EPVLFLN  345 (445)
Q Consensus       275 ~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~  345 (445)
                      ++++ +.|.+.+|+++.|| +||+|+|+..+.+  +.+. |.    +.+...+.+..++++.+++++|+..  ...+...
T Consensus       238 ~~~~-v~v~~~~g~~~~ad-~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~  315 (450)
T PF01593_consen  238 EDGG-VTVTTEDGETIEAD-AVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYS  315 (450)
T ss_dssp             ESSE-EEEEETTSSEEEES-EEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEE
T ss_pred             cccc-cccccccceEEecc-eeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeecccccccccccceecc
Confidence            9865 78999999999998 7999999999984  5544 22    3566788888999999999986543  1222222


Q ss_pred             CCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCC--
Q 042352          346 GSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRF--  419 (445)
Q Consensus       346 ~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--  419 (445)
                      +. ......+..++. .+.. + +..++..++.+.    +.+.+++++.+.++++|++++|......+....+.++..  
T Consensus       316 ~~-~~~~~~~~~~~~-~~~~-~-~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~  391 (450)
T PF01593_consen  316 DG-FSPIGYVSDPSK-FPGR-P-GGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDP  391 (450)
T ss_dssp             SS-TSSEEEEEEECC-TTSC-T-TSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTST
T ss_pred             cC-cccccccccccc-Cccc-c-cCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccccc
Confidence            22 223333344443 3333 3 444555444332    567889999999999999999963333333323333322  


Q ss_pred             ----CCCCCCCCCC-CCCCCcccCC-CCeeeC
Q 042352          420 ----AQPNQSPPTD-LIKNPKSEFS-LAVYLC  445 (445)
Q Consensus       420 ----~~~~~~~g~~-~~~~~~~t~~-~g~~~~  445 (445)
                          ++....++.. ..++...+|+ ||||+|
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  423 (450)
T PF01593_consen  392 YPRGSYSYFPPGQSSQFRPALRTPIDPGLYFA  423 (450)
T ss_dssp             TTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-
T ss_pred             ccccccccccccccccccccccCCcceEEEEe
Confidence                1112222222 1356677778 799998

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=8.9e-25  Score=207.71  Aligned_cols=394  Identities=18%  Similarity=0.147  Sum_probs=249.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-CCeeecccccchhccChhHHHhhcccCCcceeecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYS  127 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~  127 (445)
                      .+|+|+|||++||+||++|+++|++|+|+|+++++||++.+++. +|...|+|.|.|++.|.++..++++++........
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~   80 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR   80 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence            37999999999999999999999999999999999999999865 78999999999999999999999998876433211


Q ss_pred             C-cEEE-----eCCeeEeccCC-ccchHHHHHh-hcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352          128 G-AKVY-----YNGQFHTVADP-FRHFWDSIKS-LANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF  199 (445)
Q Consensus       128 ~-~~~~-----~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~  199 (445)
                      . ..++     ..|.+..+..+ .+.+...... +..+.....++....+........+...+.++++.++.+||++++.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~g~  160 (485)
T COG3349          81 EHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEKGA  160 (485)
T ss_pred             hhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHhCC
Confidence            1 1111     11222212111 1122222211 2223333333333222211111112445667889999999999998


Q ss_pred             CHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh-----hcCCCccccCcc-ccHHHHHHhcCC--CCcEEeCceeeE
Q 042352          200 SDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL-----ALGDNTIPANGI-CQIPNQIASKLP--FESILLNTRVLS  271 (445)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~gG~-~~l~~~l~~~l~--g~~i~~n~~V~~  271 (445)
                      .....+..+.++.......+++..+++...-....+     ...-+..+.|+. ..+...+.+.++  |++++.+.+|+.
T Consensus       161 ~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~  240 (485)
T COG3349         161 REGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKE  240 (485)
T ss_pred             CchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeee
Confidence            888888888888877766666766664433222211     112344556654 344666666665  999999999999


Q ss_pred             EEecCC----CcCeEEeCCCce---EEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCC
Q 042352          272 IDFDEQ----NMPNVRLANGET---LKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPV  337 (445)
Q Consensus       272 I~~~~~----~~~~V~~~~g~~---i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~  337 (445)
                      |..+..    .++++... +..   ..+. .++.+.....+.++++.+.       .+....-.+..++++.++...+..
T Consensus       241 l~l~~~~~~~~~~g~~~~-~~~~e~~~~~-~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~  318 (485)
T COG3349         241 LDLDGARGLAKVTGGDVT-GPEQEQQAAL-AVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTEL  318 (485)
T ss_pred             eeccccccccceEeeeec-CcceEeeehh-hhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccc
Confidence            988762    24555555 432   3344 5777777777777776632       344567778899999998654322


Q ss_pred             CC--Ce-EEecCCCC-cceEEEEeec-ccCCCCCCCCc-eEEEEEec--CCCCCCCChHHHHHHHHHHHhHhCCCcCCCc
Q 042352          338 QE--PV-LFLNGSGK-GIVNNMFFAT-NVAPLYGPLDK-ALISVSLI--GLFADVMDDNLTAEVIRELSDWFGKSTVGSW  409 (445)
Q Consensus       338 ~~--~~-~~~~~~~~-~~~~~~~~~s-~~~p~~~p~g~-~~l~~~~~--~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~  409 (445)
                      ..  +. +..+..+. .......+.+ ...+.+..+|. ..+.....  ..+...+++++.+.+.+++...+|.....+ 
T Consensus       319 ~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-  397 (485)
T COG3349         319 TDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAK-  397 (485)
T ss_pred             cccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhccc-
Confidence            11  11 11111111 1111222221 11223333343 22222211  225567899999999999999999875444 


Q ss_pred             eEeeEeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352          410 RHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC  445 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~  445 (445)
                      ......+...+....+||....||.+.||+++|+++
T Consensus       398 ~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~la  433 (485)
T COG3349         398 LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLA  433 (485)
T ss_pred             ccccceeccccccccCCCccccCCCCCCCccchhhc
Confidence            223455566888899999999999999999999985

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.90  E-value=2.6e-21  Score=187.92  Aligned_cols=249  Identities=20%  Similarity=0.280  Sum_probs=156.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCC--------------------eeecccccch
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG--------------------FLLDRGFQIF  104 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g--------------------~~~d~G~~~~  104 (445)
                      |++.+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|++.++                    +.+|+.++.+
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l   80 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI   80 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence            46789999999999999999999999999999999999999999874322                    3345556555


Q ss_pred             hccChhHHHhhcccCCc----ceeecCCcEEE-eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHh--hhhhhhhhc
Q 042352          105 ITAYPEAQKLLDYNALN----LQKFYSGAKVY-YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIG--LTRIRVLIK  177 (445)
Q Consensus       105 ~~~~~~~~~l~~~lgl~----~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  177 (445)
                      .... .+..++.+.++.    +.... +.+++ .+|+++..|.      .....+..+.+.+.+|.+..  +........
T Consensus        81 ~~~G-~lv~lL~~s~v~ryleF~~l~-g~~v~~~~g~~~~vP~------s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~  152 (443)
T PTZ00363         81 MASG-ELVKILLHTDVTRYLEFKVID-GSYVYQKEGKIHKVPA------TDMEALSSPLMGFFEKNRCKNFLQYVSNYDE  152 (443)
T ss_pred             ecCC-hHHHHHhhcCccceeeeEEec-eEEEEecCCeEEECCC------CHHHHhhCCCcchhhHHHHHHHHHHHHhhcc
Confidence            4433 344555544442    32222 33444 5677766543      33344455555665554321  111111111


Q ss_pred             -chHHHhc--CCCCcHHHHHHHcCCCHHHHHH---hhhhhhcccccC-CccchHHHHHHHH--HHHhhcCCCccccCccc
Q 042352          178 -TDEQILT--SSEVPIIELLRNIGFSDSIIDS---FFRPFFGGIFFD-KELETSSRLFDFI--FKCLALGDNTIPANGIC  248 (445)
Q Consensus       178 -~~~~~~~--~~~~s~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~g~~~~~~gG~~  248 (445)
                       ....+..  ++..|+.+|+++.++++.....   ++.......+.. +..+....+..+.  +..+......+|.||++
T Consensus       153 ~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g  232 (443)
T PTZ00363        153 NDPETHKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLG  232 (443)
T ss_pred             CChhhhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHH
Confidence             1011111  3468999999999988764442   222221111222 2222222222222  23333345678999999


Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCC-CcCeEEeCCCceEEeccEEEEcCCh
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQ-NMPNVRLANGETLKSEIGVILAVEE  302 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~-~~~~V~~~~g~~i~a~~~VV~a~~~  302 (445)
                      .|+++|++.+.  |+++++|++|++|..+++ ++++|++.+|++++|+ .||+....
T Consensus       233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~-~VV~~~s~  288 (443)
T PTZ00363        233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCK-LVICDPSY  288 (443)
T ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECC-EEEECccc
Confidence            99999997664  999999999999998754 5678999999999998 68875544

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.87  E-value=4.7e-22  Score=171.70  Aligned_cols=287  Identities=21%  Similarity=0.300  Sum_probs=189.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceeecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSG  128 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~  128 (445)
                      .+|+|||+||+||+||+.|+.+|+.|+|+||..-+|||..|.+.++-.+|.|+++|....+.+.++.+.+.-+       
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~-------   74 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDD-------   74 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhC-------
Confidence            4699999999999999999999999999999999999999999999889999999987777665554432100       


Q ss_pred             cEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHhh
Q 042352          129 AKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFF  208 (445)
Q Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~  208 (445)
                                                                                           |+=+.      
T Consensus        75 ---------------------------------------------------------------------glV~~------   79 (331)
T COG3380          75 ---------------------------------------------------------------------GLVDV------   79 (331)
T ss_pred             ---------------------------------------------------------------------Cceee------
Confidence                                                                                 00000      


Q ss_pred             hhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCc
Q 042352          209 RPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGE  288 (445)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~  288 (445)
                        ....+|.-.....++.         .....|.-.-||.+|++.|+..+   +|+++++|++|...+ +.+.+++++|.
T Consensus        80 --W~~~~~~~~~~~~~~~---------~d~~pyvg~pgmsalak~LAtdL---~V~~~~rVt~v~~~~-~~W~l~~~~g~  144 (331)
T COG3380          80 --WTPAVWTFTGDGSPPR---------GDEDPYVGEPGMSALAKFLATDL---TVVLETRVTEVARTD-NDWTLHTDDGT  144 (331)
T ss_pred             --ccccccccccCCCCCC---------CCCCccccCcchHHHHHHHhccc---hhhhhhhhhhheecC-CeeEEEecCCC
Confidence              0000000000000000         00111344668999999998876   899999999999884 45999997775


Q ss_pred             -eEEeccEEEEcCChhHHhhhcCC-----Cc----ccCCCCCcceEEEEEeecCCC-CCCCCCeEEecCCCCcceEEEEe
Q 042352          289 -TLKSEIGVILAVEEPEADKLLRQ-----PV----KFQRKPARSTVCLYFSADKDE-IPVQEPVLFLNGSGKGIVNNMFF  357 (445)
Q Consensus       289 -~i~a~~~VV~a~~~~~~~~ll~~-----p~----~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  357 (445)
                       ...+| .||+|.|++.+..|+..     |.    .+....|.+++.+.++|+.+. .|++.  .++.+.    .....-
T Consensus       145 ~~~~~d-~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~----~laWla  217 (331)
T COG3380         145 RHTQFD-DVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGH----PLAWLA  217 (331)
T ss_pred             cccccc-eEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCC----eeeeee
Confidence             45676 69999999999888854     22    345677888888888888553 23433  222222    222222


Q ss_pred             ecccCCCCCCCCceEEEEEecCCC----CCCCChHHHHHHHHHHHhHhCC-CcCCCceEeeEeecCCCCCCCCCCCCCCC
Q 042352          358 ATNVAPLYGPLDKALISVSLIGLF----ADVMDDNLTAEVIRELSDWFGK-STVGSWRHLRTYRVRFAQPNQSPPTDLIK  432 (445)
Q Consensus       358 ~s~~~p~~~p~g~~~l~~~~~~~~----~~~~~~e~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  432 (445)
                      -++..|++.|.|. ++.+....+|    .+.+++..++.........++. ...+.|.+  ..++.|+.|..+.++..+-
T Consensus       218 ~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~--~H~WrYA~P~~~~~~~~L~  294 (331)
T COG3380         218 RDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSD--AHRWRYAIPNDAVAGPPLD  294 (331)
T ss_pred             ccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHH--hhccccccccccccCCccc
Confidence            3445677888886 4444444433    4567788887777777777774 34567754  4556688888887776542


Q ss_pred             CCcccCCCCeeeC
Q 042352          433 NPKSEFSLAVYLC  445 (445)
Q Consensus       433 ~~~~t~~~g~~~~  445 (445)
                      -..   =-+||+|
T Consensus       295 ad~---~~~l~~c  304 (331)
T COG3380         295 ADR---ELPLYAC  304 (331)
T ss_pred             cCC---CCceeee
Confidence            111   2347776

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.80  E-value=3.8e-18  Score=162.01  Aligned_cols=286  Identities=13%  Similarity=0.110  Sum_probs=182.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCee-ecccccchhccChhHHHhhcccCCcceeecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFL-LDRGFQIFITAYPEAQKLLDYNALNLQKFYS  127 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~  127 (445)
                      +||+|||||++||++|+.|++.|.+|+|+|+++.+||.+.+...+|.. .+.|+|++....+.+.+++..+- ++..+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~-~~~~~~~   80 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF-ELNNYQH   80 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc-cccceeE
Confidence            699999999999999999999999999999999999999987766644 58999999887777777766532 2223333


Q ss_pred             CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH---HHcCCCHHHH
Q 042352          128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL---RNIGFSDSII  204 (445)
Q Consensus       128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l---~~~~~~~~~~  204 (445)
                      ...++.+|++..+|-    ..+.+..+...  ...+.+...+......  .    ...+...+.+|.   .+ .+++.+.
T Consensus        81 ~~~~~~~g~~~~~P~----~~~~i~~l~~~--~~~~~~~~~l~~~~~~--~----~~~~~~~~~e~~d~~~~-~~G~~ly  147 (377)
T TIGR00031        81 RVLALYNNLDLTLPF----NFNQFRKLLGV--KDAQELQNFFNAQFKY--G----DHVPLEELQEIADPDIQ-LLYQFLY  147 (377)
T ss_pred             EEEEEECCeEEccCC----CHHHHHHhccc--chHHHHHHHHHHHhhc--c----cCCCCCCHHHHHHHHHH-HHHHHHH
Confidence            356678888776643    22222222211  1112121111111000  0    011123455554   43 4779999


Q ss_pred             HHhhhhhhcccccCCccchHHHHHHHHH-------HHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCC
Q 042352          205 DSFFRPFFGGIFFDKELETSSRLFDFIF-------KCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQ  277 (445)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~  277 (445)
                      +.++.++...+|+.++.++++.+...+.       ..+...-..+|.+|++++++.|.+.- +.+|++|+.+..|+..++
T Consensus       148 e~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~-~i~v~l~~~~~~~~~~~~  226 (377)
T TIGR00031       148 QKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHP-LIDVKLNCHINLLKDKDS  226 (377)
T ss_pred             HHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcC-CCEEEeCCccceeecccc
Confidence            9999999999999999998877554221       12222346689999999999999774 679999998888875432


Q ss_pred             CcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEee-cCCCCCCCCCeEEecCCCCcceEEEE
Q 042352          278 NMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSA-DKDEIPVQEPVLFLNGSGKGIVNNMF  356 (445)
Q Consensus       278 ~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (445)
                         .+.+..+ .+. + .||.|.|++.+-+   .  ...++++.+... .+.. +... -.+.+++..+  ..-.+.+++
T Consensus       227 ---~~~~~~~-~~~-~-~vi~Tg~id~~f~---~--~~g~L~yrsl~f-~~e~~~~~~-~q~~~~vnyp--~~~~~tRI~  291 (377)
T TIGR00031       227 ---QLHFANK-AIR-K-PVIYTGLIDQLFG---Y--RFGALQYRSLKF-EWERHEFKN-FQGYAVVNFP--LNVPITRIV  291 (377)
T ss_pred             ---ceeeccc-ccc-C-cEEEecCchHHHh---h--ccCcccceeEEE-EEEEecccc-CCCCeEEEcC--CCCCcceEE
Confidence               2444433 333 5 5999999887543   1  333456666544 3333 4332 1334444444  234566777


Q ss_pred             eecccCCC
Q 042352          357 FATNVAPL  364 (445)
Q Consensus       357 ~~s~~~p~  364 (445)
                      ...+..+.
T Consensus       292 e~k~f~~~  299 (377)
T TIGR00031       292 EYKHLTYV  299 (377)
T ss_pred             eeecCCCC
Confidence            77665543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.77  E-value=2.8e-17  Score=161.20  Aligned_cols=233  Identities=18%  Similarity=0.193  Sum_probs=138.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcccC-
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDYNA-  119 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lg-  119 (445)
                      +..+|+|||||++||+||++|++.    |.+|+|+|+++.+||++.++.  .+|+.++.|.. +...++.+.++++.++ 
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ips   99 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSIPS   99 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhccc
Confidence            457999999999999999999996    689999999999999998754  67899988866 4566788888886652 


Q ss_pred             -----Ccce----eecCC------cEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHh
Q 042352          120 -----LNLQ----KFYSG------AKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQIL  183 (445)
Q Consensus       120 -----l~~~----~~~~~------~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (445)
                           ..+.    .+...      ..+.. +|...                ......+..+.+..+.++  ....   ..
T Consensus       100 le~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~----------------d~~~~~L~~k~r~~Ll~l--~l~~---e~  158 (576)
T PRK13977        100 LEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEIL----------------DTDKFGLSKKDRKELLKL--LLTP---EE  158 (576)
T ss_pred             cCCCCcccccceeeeecCCcccceeeEEcCCCCEE----------------ECcCCCCCHHHHHHHHHH--hccC---HH
Confidence                 1111    11100      00110 11111                111112223333332222  1122   23


Q ss_pred             cCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh----h-cC---CC-ccccCccccHHHHH
Q 042352          184 TSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL----A-LG---DN-TIPANGICQIPNQI  254 (445)
Q Consensus       184 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~g---~~-~~~~gG~~~l~~~l  254 (445)
                      ++++.++.+|+++..+.. ....    +...+|+-.. ..|+..+...+..+    . ..   +. +....-+.+|++.|
T Consensus       159 ~Ld~~tI~d~f~~~Ff~t-~Fw~----~w~t~FaF~~-whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL  232 (576)
T PRK13977        159 KLDDKTIEDWFSPEFFET-NFWY----YWRTMFAFEK-WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPL  232 (576)
T ss_pred             HhCCcCHHHHHhhcCchh-HHHH----HHHHHHCCch-hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHH
Confidence            467899999999865533 2333    3334444443 33443332222211    1 11   11 11122347788888


Q ss_pred             HhcCC--CCcEEeCceeeEEEec--C--CCcCeEEeC-CCc----eEEeccEEEEcCChhHHhh
Q 042352          255 ASKLP--FESILLNTRVLSIDFD--E--QNMPNVRLA-NGE----TLKSEIGVILAVEEPEADK  307 (445)
Q Consensus       255 ~~~l~--g~~i~~n~~V~~I~~~--~--~~~~~V~~~-~g~----~i~a~~~VV~a~~~~~~~~  307 (445)
                      .+.++  ||+|++|++|++|..+  +  +.+++|.+. +|+    .+.++|.||+|++-..-..
T Consensus       233 ~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns  296 (576)
T PRK13977        233 IKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESS  296 (576)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcccc
Confidence            88775  9999999999999885  3  235677764 332    2566668999988755433

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.68  E-value=8.5e-17  Score=113.92  Aligned_cols=66  Identities=38%  Similarity=0.643  Sum_probs=59.6

Q ss_pred             EECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhccc
Q 042352           53 VIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYN  118 (445)
Q Consensus        53 IIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l  118 (445)
                      |||||++||+||+.|+++|++|+|+|+++.+||++.+...+|+.+|.|++++..  .++.+.+++++|
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L   68 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL   68 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence            899999999999999999999999999999999999999999999999999877  367888988864

...

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=1.7e-15  Score=134.55  Aligned_cols=236  Identities=14%  Similarity=0.155  Sum_probs=155.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc--CC-eeecccccchhccChhHHHhhcccCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV--DG-FLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g-~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      ++|++|||||++|+..|..|++.|++|+|+||.+.+||.|.+...  .| ...-.|+|+|+..+..+++.+..+ .++.+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F-~e~~~   79 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQF-TEFNP   79 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhh-hhhhh
Confidence            479999999999999999999999999999999999999999755  46 456789999999888888877642 12333


Q ss_pred             ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352          125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII  204 (445)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~  204 (445)
                      +........+|....+    +..++.+.+++..... .+.....+.....      +....+..++++-.-+ -+++...
T Consensus        80 Y~hrVla~~ng~~~~l----P~nl~ti~ql~G~~~~-p~~a~~~i~~~~~------~~~~~~~q~~ee~ais-~vg~~LY  147 (374)
T COG0562          80 YQHRVLALVNGQLYPL----PFNLNTINQLFGKNFT-PDEARKFIEEQAA------EIDIAEPQNLEEQAIS-LVGRDLY  147 (374)
T ss_pred             hccceeEEECCeeeec----cccHHHHHHHhCccCC-HHHHHHHHHHhhc------cccccchhhhhhHHHH-HHHHHHH
Confidence            3333444566766644    4445555555432211 1111111111110      0011112233332222 1457788


Q ss_pred             HHhhhhhhcccccCCccchHHHHHHHHH-------HHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCC
Q 042352          205 DSFFRPFFGGIFFDKELETSSRLFDFIF-------KCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQ  277 (445)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~  277 (445)
                      +.++.++....|+.++.++.+.+..-+.       +.+..--...|.+|+..+.+.|++.- ..+|++||.-..|.....
T Consensus       148 ~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp-~I~V~Lntd~~~~~~~~~  226 (374)
T COG0562         148 EAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHP-NIDVRLNTDFFDVKDQLR  226 (374)
T ss_pred             HHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCC-CceEEecCcHHHHhhhhc
Confidence            8999999999999999988877654332       22333345579999999999999864 679999998777654421


Q ss_pred             CcCeEEeCCCceEEeccEEEEcCChhHHhhhc
Q 042352          278 NMPNVRLANGETLKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       278 ~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll  309 (445)
                               +  +.+. .||-+.+.+.+-.-.
T Consensus       227 ---------~--~~~~-~VvytG~iD~~Fdy~  246 (374)
T COG0562         227 ---------A--IPFA-PVVYTGPIDAYFDYC  246 (374)
T ss_pred             ---------c--cCCC-ceEEecchHhhhccc
Confidence                     1  3344 599999888764433

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.61  E-value=8.9e-15  Score=134.97  Aligned_cols=162  Identities=23%  Similarity=0.298  Sum_probs=108.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF  125 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~  125 (445)
                      ++.+||||||||++||.||..++++|++|+|||+++.+|-++.-        .-|+...+.+.....+++...+=     
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~--------sGgGrCN~Tn~~~~~~~ls~~p~-----   67 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM--------SGGGRCNFTNSEAPDEFLSRNPG-----   67 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe--------cCCCCccccccccHHHHHHhCCC-----
Confidence            45789999999999999999999999999999999999865542        12222222222223333332110     


Q ss_pred             cCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHH
Q 042352          126 YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIID  205 (445)
Q Consensus       126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~  205 (445)
                              +|                           ..+..+             +..+....+.+|+++.|+.-.   
T Consensus        68 --------~~---------------------------~fl~sa-------------l~~ft~~d~i~~~e~~Gi~~~---   96 (408)
T COG2081          68 --------NG---------------------------HFLKSA-------------LARFTPEDFIDWVEGLGIALK---   96 (408)
T ss_pred             --------cc---------------------------hHHHHH-------------HHhCCHHHHHHHHHhcCCeeE---
Confidence                    00                           001111             112334466677776653111   


Q ss_pred             HhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCcccc-CccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeE
Q 042352          206 SFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPA-NGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNV  282 (445)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V  282 (445)
                                 .                  ...+..+|. ...+.|+++|.+.++  ||+|+++++|.+|+++++ ...+
T Consensus        97 -----------e------------------~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-~f~l  146 (408)
T COG2081          97 -----------E------------------EDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-GFRL  146 (408)
T ss_pred             -----------E------------------ccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-eEEE
Confidence                       0                  012233343 778899999999886  999999999999999984 4889


Q ss_pred             EeCCCceEEeccEEEEcCCh
Q 042352          283 RLANGETLKSEIGVILAVEE  302 (445)
Q Consensus       283 ~~~~g~~i~a~~~VV~a~~~  302 (445)
                      .+.+|++++|+ .+|+|++-
T Consensus       147 ~t~~g~~i~~d-~lilAtGG  165 (408)
T COG2081         147 DTSSGETVKCD-SLILATGG  165 (408)
T ss_pred             EcCCCCEEEcc-EEEEecCC
Confidence            99999889999 69999984

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=99.54  E-value=4.1e-13  Score=129.08  Aligned_cols=242  Identities=21%  Similarity=0.315  Sum_probs=138.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC---------------------Ceeecccccc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD---------------------GFLLDRGFQI  103 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---------------------g~~~d~G~~~  103 (445)
                      |++.+||||+|.|+.-.-.|..|++.|++|+.+|+|+.-||...++...                     .+.+|+-+..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl   80 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL   80 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence            4578999999999999999999999999999999999999999987421                     3566777766


Q ss_pred             hhccChhHHHhhcccC----CcceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHH--Hhhhhhhhhhc
Q 042352          104 FITAYPEAQKLLDYNA----LNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLL--IGLTRIRVLIK  177 (445)
Q Consensus       104 ~~~~~~~~~~l~~~lg----l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  177 (445)
                      +....+.+.-|.+ -+    ++++... +.+++.+++++..|..      ....+.....++.+|.+  +.+........
T Consensus        81 l~a~g~LV~lLi~-S~V~rYLEFk~V~-~~~v~~~~~l~kVP~s------r~dvf~s~~lsl~eKR~lmkFl~~v~~~~~  152 (438)
T PF00996_consen   81 LYARGPLVKLLIS-SGVTRYLEFKAVD-GSYVYKNGKLHKVPCS------REDVFKSKLLSLFEKRRLMKFLKFVANYEE  152 (438)
T ss_dssp             EETTSHHHHHHHH-CTGGGGSEEEEES-EEEEEETTEEEE--SS------HHHHHC-TTS-HHHHHHHHHHHHHHHHGCT
T ss_pred             hhccCHHHHHHHh-CCcccceEEEEcc-eeEEEeCCEEeeCCCC------HHHhhcCCCccHHHHHHHHHHHHHHhhccc
Confidence            6554444443333 23    2333333 3466778888877543      23334445555555432  11111111111


Q ss_pred             chH---HHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCcc------chHHHHHHHHHHH--hhcCCCccccCc
Q 042352          178 TDE---QILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKEL------ETSSRLFDFIFKC--LALGDNTIPANG  246 (445)
Q Consensus       178 ~~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~g~~~~~~gG  246 (445)
                      ...   +.......++.++++.+++++.....+...+  +++..+..      +...++..++...  +..+...+|..|
T Consensus       153 ~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG  230 (438)
T PF00996_consen  153 DDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYG  230 (438)
T ss_dssp             TBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-
T ss_pred             CCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccC
Confidence            111   1122446899999999999877554443222  22222211      1222222222222  233467789999


Q ss_pred             cccHHHHHHhcCC--CCcEEeCceeeEEEecCC-CcCeEEeCCCceEEeccEEEE
Q 042352          247 ICQIPNQIASKLP--FESILLNTRVLSIDFDEQ-NMPNVRLANGETLKSEIGVIL  298 (445)
Q Consensus       247 ~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~-~~~~V~~~~g~~i~a~~~VV~  298 (445)
                      .+.|++++++...  |+...||++|.+|..+++ +.++|.. +|++++|+ +||.
T Consensus       231 ~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k-~vI~  283 (438)
T PF00996_consen  231 LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAK-KVIG  283 (438)
T ss_dssp             TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEES-EEEE
T ss_pred             CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcC-EEEE
Confidence            9999999998765  999999999999998654 4566765 78899998 5774

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.53  E-value=1.3e-13  Score=131.63  Aligned_cols=204  Identities=19%  Similarity=0.223  Sum_probs=116.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeec----cCCeeeccc---ccchhccChhHHHhhc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDS----VDGFLLDRG---FQIFITAYPEAQKLLD  116 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G---~~~~~~~~~~~~~l~~  116 (445)
                      ++++||+|||||+.|+++|++|++.+  .+|+|+||.+.+|...++.+    +.|.....|   +..-...+....++++
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k   80 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK   80 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence            35799999999999999999999997  99999999999997776632    223222222   0111112334577788


Q ss_pred             ccCCcceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH
Q 042352          117 YNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN  196 (445)
Q Consensus       117 ~lgl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~  196 (445)
                      ++++++...  +..+...+.                       ...+.+.....+...  ..+.         ..     
T Consensus        81 q~~~~f~~~--g~l~vA~~e-----------------------~e~~~L~~l~~~~~~--ngv~---------~~-----  119 (429)
T COG0579          81 QLGIPFINC--GKLSVATGE-----------------------EEVERLEKLYERGKA--NGVF---------DL-----  119 (429)
T ss_pred             HhCCccccc--CeEEEEECh-----------------------HHHHHHHHHHHHHhh--CCCc---------ce-----
Confidence            877666543  111111110                       001111111111100  0000         00     


Q ss_pred             cCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCc---cccHHHHHHhcCC--CCcEEeCceeeE
Q 042352          197 IGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANG---ICQIPNQIASKLP--FESILLNTRVLS  271 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG---~~~l~~~l~~~l~--g~~i~~n~~V~~  271 (445)
                      ..++.+-++. ++|.+..-                    ..++.+.|.+|   ...+..+|++.++  |+++++|++|+.
T Consensus       120 ~~ld~~~i~~-~eP~l~~~--------------------~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~  178 (429)
T COG0579         120 EILDKEEIKE-LEPLLNEG--------------------AVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTG  178 (429)
T ss_pred             eecCHHHHHh-hCcccccc--------------------ceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeE
Confidence            0111111211 12333200                    01122333333   2345566666554  999999999999


Q ss_pred             EEecCCCcCeEEeCCCce-EEeccEEEEcCChhHH--hhhcCCC
Q 042352          272 IDFDEQNMPNVRLANGET-LKSEIGVILAVEEPEA--DKLLRQP  312 (445)
Q Consensus       272 I~~~~~~~~~V~~~~g~~-i~a~~~VV~a~~~~~~--~~ll~~p  312 (445)
                      |++.+++++.+.+.+|++ ++|+ .||.+++....  .++...+
T Consensus       179 i~~~~dg~~~~~~~~g~~~~~ak-~Vin~AGl~Ad~la~~~g~~  221 (429)
T COG0579         179 IEKQSDGVFVLNTSNGEETLEAK-FVINAAGLYADPLAQMAGIP  221 (429)
T ss_pred             EEEeCCceEEEEecCCcEEEEee-EEEECCchhHHHHHHHhCCC
Confidence            999988767788888877 9998 79999999763  5555554

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.50  E-value=3.6e-14  Score=136.75  Aligned_cols=57  Identities=28%  Similarity=0.339  Sum_probs=40.5

Q ss_pred             ccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          246 GICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       246 G~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      -..++++.|.+.+.  |++|+++++|++|+.++++.+.|.+++++++.|+ .||+|++-.
T Consensus       107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~-~vILAtGG~  165 (409)
T PF03486_consen  107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEAD-AVILATGGK  165 (409)
T ss_dssp             -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEES-EEEE----S
T ss_pred             cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCC-EEEEecCCC
Confidence            35677888877765  9999999999999998877788999777789998 699998853

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.48  E-value=1.5e-11  Score=120.74  Aligned_cols=40  Identities=35%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CC-CEEEEecCCCCCc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQ-GR-PFVLLEASDAVGG   85 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~-G~-~V~vlE~~~~~GG   85 (445)
                      ...+||+|||||+.|+++|++|+++ |. +|+|+||+...+|
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g   69 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG   69 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence            3568999999999999999999996 85 9999999764433

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.48  E-value=2e-11  Score=119.96  Aligned_cols=40  Identities=23%  Similarity=0.413  Sum_probs=35.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +||+|||||++|+++|++|++.|++|+|+||++.+|+.++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as   41 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS   41 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence            6999999999999999999999999999999987664443

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.47  E-value=1.6e-13  Score=132.32  Aligned_cols=69  Identities=28%  Similarity=0.355  Sum_probs=50.4

Q ss_pred             CccccCc---cccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC
Q 042352          240 NTIPANG---ICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ  311 (445)
Q Consensus       240 ~~~~~gG---~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~  311 (445)
                      .+.+.+|   ...+.++|.+.+.  |++|+.+++|++|..+++++.+|.+.+|+ ++|+ +||+|++++.. .|+..
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad-~vV~a~G~~s~-~l~~~  209 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRAD-RVVLAAGAWSP-QLLPL  209 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEEC-EEEE--GGGHH-HHHHT
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccc-eeEecccccce-eeeec
Confidence            3344555   4566777776553  99999999999999998886679999997 9998 79999999863 34433

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.46  E-value=5.9e-13  Score=112.33  Aligned_cols=67  Identities=30%  Similarity=0.460  Sum_probs=53.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~  124 (445)
                      ..||+|||||++||+|||+|+++|.+|+|+||+-.+||-++          .|+..|+.  ......++++++|++++.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~ye~   98 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRYEE   98 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCccee
Confidence            57999999999999999999999999999999999998665          45555543  234566677777776654

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.44  E-value=2.9e-11  Score=119.21  Aligned_cols=54  Identities=13%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+.++|.+.+.  |++|+.+++|++|+.++++++.|++.++ +++|+ +||+|++.+.
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~-~VV~a~G~~~  257 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITAD-AYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCC-EEEECCCcch
Confidence            44555554442  9999999999999988766556777765 78998 7999999985

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.41  E-value=6.4e-11  Score=115.13  Aligned_cols=42  Identities=29%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||+.|+++|++|+++|++|+|+|+....++..+
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~s   43 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGS   43 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcC
Confidence            358999999999999999999999999999999876544333

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.36  E-value=9.2e-12  Score=121.60  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH--HhhhcC
Q 042352          248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE--ADKLLR  310 (445)
Q Consensus       248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~--~~~ll~  310 (445)
                      ..+.++|.+.+.  |++++++++|++|+.++++ +.|.+.+| ++.++ .||+|++.+.  +.++++
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad-~vV~A~G~~s~~l~~~~g  212 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEAR-TLINCAGLMSDRLAKMAG  212 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeC-EEEECCCcchHHHHHHhC
Confidence            456666665553  9999999999999887655 57888777 78998 7999999975  344444

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.34  E-value=6.7e-11  Score=106.29  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             CccccCccccHHHHHHhcCCCCcEEeCceeeEEEecC--CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC
Q 042352          240 NTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE--QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ  311 (445)
Q Consensus       240 ~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~--~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~  311 (445)
                      +.++......+-+.+.+.  ||.++-+..|+.|+..+  +..+.|.|.+|..+.|++ +|+|+++|. .+||+.
T Consensus       149 vi~a~kslk~~~~~~~~~--G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akk-iI~t~GaWi-~klL~~  218 (399)
T KOG2820|consen  149 VINAAKSLKALQDKAREL--GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKK-IIFTVGAWI-NKLLPT  218 (399)
T ss_pred             EeeHHHHHHHHHHHHHHc--CeEEecCcceeeEeeccCCCceeEEEeccCCeeecce-EEEEecHHH-HhhcCc
Confidence            333333333444444433  99999999999998653  345889999998899995 999999996 567765

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.32  E-value=2.1e-11  Score=118.68  Aligned_cols=37  Identities=41%  Similarity=0.498  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +||+|||||++|+++|++|+++|.+|+|+|+.+..++
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~   37 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS   37 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence            5999999999999999999999999999999876543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.29  E-value=4.9e-11  Score=118.74  Aligned_cols=52  Identities=17%  Similarity=0.132  Sum_probs=39.4

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+++.|.+.+.  |++|+.+++|++|+. + +.+.|++.+| +++|+ +||+|++.|.
T Consensus       184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~~~~v~t~~g-~v~A~-~VV~Atga~s  237 (460)
T TIGR03329       184 LLVRGLRRVALELGVEIHENTPMTGLEE-G-QPAVVRTPDG-QVTAD-KVVLALNAWM  237 (460)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEee-C-CceEEEeCCc-EEECC-EEEEcccccc
Confidence            34455554442  999999999999985 3 3467888877 68998 6999999875

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.28  E-value=1e-10  Score=115.83  Aligned_cols=43  Identities=23%  Similarity=0.304  Sum_probs=37.3

Q ss_pred             CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          261 ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       261 ~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      ++|++|++|++|+.++++.+.|++.+| +++|+ .||+|++.|..
T Consensus       232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~-~VVvaAG~~S~  274 (497)
T PTZ00383        232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRAR-FVVVSACGYSL  274 (497)
T ss_pred             EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeC-EEEECcChhHH
Confidence            679999999999988666678888888 69998 69999999864

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.27  E-value=6e-11  Score=123.28  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             CCccccCcc---ccHHHHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          239 DNTIPANGI---CQIPNQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       239 ~~~~~~gG~---~~l~~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      +.+++.+|.   ..+.++|.+.+. |++|+.+++|++|..++++ +.|.+.+|..+.++ .||+|++.+.
T Consensus       396 g~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad-~VV~A~G~~s  463 (662)
T PRK01747        396 GIFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDG-WQLDFAGGTLASAP-VVVLANGHDA  463 (662)
T ss_pred             cEEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECC-EEEECCCCCc
Confidence            344444443   366777777665 7999999999999887655 56888888767898 7999999985

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.25  E-value=3.7e-10  Score=110.29  Aligned_cols=40  Identities=43%  Similarity=0.658  Sum_probs=36.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +.++||+|||||++||++||+|+++|.+|+|+|++...+|
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g   41 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG   41 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence            4578999999999999999999999999999999776653

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.25  E-value=5.8e-11  Score=107.99  Aligned_cols=41  Identities=32%  Similarity=0.459  Sum_probs=38.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.|++.|++|+|+|++..+||.+
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            35899999999999999999999999999999999998754

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.24  E-value=9.3e-11  Score=106.27  Aligned_cols=41  Identities=41%  Similarity=0.567  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.|+++|++|+|+||+..+||.+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            36899999999999999999999999999999999998754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.22  E-value=1.4e-10  Score=115.31  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=37.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s   89 (445)
                      +..+||+|||||+.|+++|++|++.  |.+|+|+||.+.+|+..++
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~   48 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN   48 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence            3568999999999999999999985  7899999999877765544

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.21  E-value=3e-10  Score=109.90  Aligned_cols=34  Identities=32%  Similarity=0.512  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +||+|||||++|+++|++|+++|++|+|+|++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5999999999999999999999999999999865

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.19  E-value=1.2e-10  Score=117.93  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      .+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G   43 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG   43 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence            58999999999999999999999999999999765444

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.19  E-value=1.4e-11  Score=104.88  Aligned_cols=70  Identities=29%  Similarity=0.381  Sum_probs=48.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~  124 (445)
                      ..+||+|||||++||+||++|+++|++|+|+|++..+||...          .|+..|+.  ..+....+++++|++++.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~----------~Gg~lf~~iVVq~~a~~iL~elgi~y~~   85 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW----------GGGMLFNKIVVQEEADEILDELGIPYEE   85 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT----------S-CTT---EEEETTTHHHHHHHT---EE
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc----------ccccccchhhhhhhHHHHHHhCCceeEE
Confidence            358999999999999999999999999999999999998764          34444433  234567889999998876


Q ss_pred             ec
Q 042352          125 FY  126 (445)
Q Consensus       125 ~~  126 (445)
                      ..
T Consensus        86 ~~   87 (230)
T PF01946_consen   86 YG   87 (230)
T ss_dssp             -S
T ss_pred             eC
Confidence            54

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.18  E-value=1.4e-10  Score=115.88  Aligned_cols=43  Identities=37%  Similarity=0.502  Sum_probs=37.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC--CCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA--VGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~--~GG~~   87 (445)
                      |+..+||+|||||++||+||+.|+++|.+|+|+||.+.  .||.+
T Consensus         1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s   45 (466)
T PRK08274          1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS   45 (466)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence            35678999999999999999999999999999999874  56643

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.18  E-value=8.4e-10  Score=107.70  Aligned_cols=43  Identities=33%  Similarity=0.480  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .++||+|||||++|++||+.|+++|++|+|+|+++.+|-+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            5699999999999999999999999999999999999976643

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.18  E-value=1.6e-10  Score=114.72  Aligned_cols=41  Identities=27%  Similarity=0.399  Sum_probs=36.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s   89 (445)
                      +||+|||||++|+++|+.|++.  |.+|+|+||.+.+|...+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~   43 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN   43 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence            5999999999999999999997  9999999998877754444

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.17  E-value=2.2e-10  Score=113.09  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..+||+|||||++|+++|+.|++.  |.+|+|+||.+.+|-..+.
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~   49 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN   49 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence            467999999999999999999998  8999999997777755543

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.15  E-value=2e-10  Score=115.43  Aligned_cols=43  Identities=35%  Similarity=0.551  Sum_probs=39.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ...++||+|||||++||+||+.++++|.+|+||||.+..||..
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            4457999999999999999999999999999999999999854

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.15  E-value=1.1e-08  Score=105.14  Aligned_cols=40  Identities=28%  Similarity=0.391  Sum_probs=36.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      .+.+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            3569999999999999999999999999999999977666

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=99.13  E-value=1.6e-09  Score=103.72  Aligned_cols=230  Identities=18%  Similarity=0.256  Sum_probs=123.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcccCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDYNALN  121 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~  121 (445)
                      ..++-|||+|+++|+||.+|.+.    |.+|+|||+.+..||.+.+..  ..||..--| ......+.-+++|+..+.-.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgG-R~~~~~~eclwdLls~IPSl   80 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGG-RMMEFHYECLWDLLSSIPSL   80 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCC-ccccchhHHHHHHHHhCCCC
Confidence            35788999999999999999997    569999999999999887654  346665443 33334456677776653311


Q ss_pred             cee----------ec---C---CcE-EEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhc
Q 042352          122 LQK----------FY---S---GAK-VYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILT  184 (445)
Q Consensus       122 ~~~----------~~---~---~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (445)
                      -.+          ++   +   ... +.-+|+....               .....+..+.+..+.++.  ..+.   ..
T Consensus        81 e~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------------~~~~~Ls~k~r~eL~kL~--l~~E---~~  140 (500)
T PF06100_consen   81 EDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------------DSKFGLSEKDRMELIKLL--LTPE---ED  140 (500)
T ss_pred             CCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------------cCcCCCCHHHHHHHHHHh--cCCH---HH
Confidence            000          00   0   000 0011111100               000112222222222221  1111   12


Q ss_pred             CCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhc-C------C-CccccCccccHHHHHHh
Q 042352          185 SSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLAL-G------D-NTIPANGICQIPNQIAS  256 (445)
Q Consensus       185 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g------~-~~~~~gG~~~l~~~l~~  256 (445)
                      +.+.++.+|+...-|...     +--+...+|+-.++.....+-..+.+..+. .      + ......-+.+|+..|.+
T Consensus       141 L~~~~I~d~F~~~FF~Sn-----FW~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~  215 (500)
T PF06100_consen  141 LGDKRIEDWFSESFFESN-----FWYMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIR  215 (500)
T ss_pred             hCcccHHHhcchhhhcCc-----hhHhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHH
Confidence            446677777765322222     223444555545544333333333322221 1      1 12233446788999988


Q ss_pred             cCC--CCcEEeCceeeEEEecCC--C--cCeEEe-CCCc----eEEeccEEEEcCChh
Q 042352          257 KLP--FESILLNTRVLSIDFDEQ--N--MPNVRL-ANGE----TLKSEIGVILAVEEP  303 (445)
Q Consensus       257 ~l~--g~~i~~n~~V~~I~~~~~--~--~~~V~~-~~g~----~i~a~~~VV~a~~~~  303 (445)
                      .|+  ||++++|++|+.|..+.+  .  +..+.+ .+|+    .+..+|.|+++.+.-
T Consensus       216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~  273 (500)
T PF06100_consen  216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM  273 (500)
T ss_pred             HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence            886  999999999999987632  2  123333 4553    255677677766553

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=6.5e-10  Score=102.32  Aligned_cols=244  Identities=20%  Similarity=0.278  Sum_probs=142.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC---------------------Ceeecccccc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD---------------------GFLLDRGFQI  103 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---------------------g~~~d~G~~~  103 (445)
                      |++.|||+|+|-|+.-..-+..|+..|.+|+.+|||+.-||-.+|....                     .+.+|+-+..
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~   80 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF   80 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence            3456999999999999999999999999999999999999988875311                     1334444444


Q ss_pred             hhccChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHH--hhhhhhhhhc
Q 042352          104 FITAYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLI--GLTRIRVLIK  177 (445)
Q Consensus       104 ~~~~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  177 (445)
                      ++.... +..++-+-++.    ++. -++.+++-+|+++++|..      ....+.++.+.+.++-..  .+.......+
T Consensus        81 lmAn~~-Lvk~Li~T~V~~YL~fk~-i~gsfv~~~~k~~KVP~t------~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e  152 (440)
T KOG1439|consen   81 LMANGE-LVKILIHTGVTRYLEFKS-ISGSFVYKKGKIYKVPAT------EAEALTSPLMGLFEKRRVMKFLKFVLNYDE  152 (440)
T ss_pred             hhccch-HHHHHHHhchhhheEEEe-ecceEEEECCeEEECCCC------HHHHhcCCccchhHHHHHHHHHHHHhhhhh
Confidence            443333 33333333432    222 235566777888877543      334455666666554321  1111111111


Q ss_pred             chHH-Hhc--CCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCC------ccchHHHH--HHHHHHHhhcCCCccccCc
Q 042352          178 TDEQ-ILT--SSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDK------ELETSSRL--FDFIFKCLALGDNTIPANG  246 (445)
Q Consensus       178 ~~~~-~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~g~~~~~~gG  246 (445)
                      ...+ +..  ....++.+++.+.++.......... .+ +++.++      ..+..-++  |...+..+......+|..|
T Consensus       153 ~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh-~~-al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yG  230 (440)
T KOG1439|consen  153 EDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGH-AI-ALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYG  230 (440)
T ss_pred             hccccccccccccchHHHHHHHhcccccceeeeee-ee-EEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceecccC
Confidence            1111 111  2245899999888776654332211 11 122222      11221122  2222233333346799999


Q ss_pred             cccHHHHHHhcCC--CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcC
Q 042352          247 ICQIPNQIASKLP--FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAV  300 (445)
Q Consensus       247 ~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~  300 (445)
                      .+.|++.+++...  |+++.+|.++.+|....++ +++|... ++...++ .||+-.
T Consensus       231 lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k-~vi~dp  285 (440)
T KOG1439|consen  231 LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCK-KVICDP  285 (440)
T ss_pred             cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecC-Cceeecc-eEEecC
Confidence            9999999998664  9999999999999995443 3444433 2345565 355543

>PRK07236 hypothetical protein; Provisional

Probab=99.12  E-value=1.5e-09  Score=105.86  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             HHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhc
Q 042352          250 IPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLL  309 (445)
Q Consensus       250 l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll  309 (445)
                      +.+.|.+.+++++|+++++|++|+.++++ +.|++.+|++++++ .||.|-+.+.. .+.+
T Consensus       102 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vIgADG~~S~vR~~l  160 (386)
T PRK07236        102 LYRALRAAFPAERYHLGETLVGFEQDGDR-VTARFADGRRETAD-LLVGADGGRSTVRAQL  160 (386)
T ss_pred             HHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeC-EEEECCCCCchHHHHh
Confidence            44455555556689999999999987655 67888999999998 79999887653 4433

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.11  E-value=3.9e-10  Score=99.58  Aligned_cols=49  Identities=29%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             HHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          252 NQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       252 ~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      +.+++.. +.+|+++++|++|..++++ +.|++.++++++|+ +||+|++..
T Consensus        89 ~~~~~~~-~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~-~VVlAtG~~  137 (203)
T PF13738_consen   89 QEYAERF-GLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRAD-RVVLATGHY  137 (203)
T ss_dssp             HHHHHHT-TGGEETS--EEEEEEETTT-EEEEETTS-EEEEE-EEEE---SS
T ss_pred             HHHHhhc-CcccccCCEEEEEEEeccE-EEEEEEecceeeee-eEEEeeecc
Confidence            3444444 6789999999999999877 99999999889998 799999964

...

>PLN02661 Putative thiazole synthesis

Probab=99.08  E-value=2.1e-09  Score=100.11  Aligned_cols=40  Identities=33%  Similarity=0.537  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~   87 (445)
                      ++||+|||||++||+||+.|+++ |++|+|+|++..+||..
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~  132 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA  132 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence            68999999999999999999986 89999999999998744

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.07  E-value=8.2e-09  Score=100.55  Aligned_cols=81  Identities=14%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             cHHHHHHhcCC---CCcEEeCceeeEEEecCCCcCeEEeC-CCceEEeccEEEEcCChhH-HhhhcCCCcccCCCCCcce
Q 042352          249 QIPNQIASKLP---FESILLNTRVLSIDFDEQNMPNVRLA-NGETLKSEIGVILAVEEPE-ADKLLRQPVKFQRKPARST  323 (445)
Q Consensus       249 ~l~~~l~~~l~---g~~i~~n~~V~~I~~~~~~~~~V~~~-~g~~i~a~~~VV~a~~~~~-~~~ll~~p~~~~~~~~~~~  323 (445)
                      .+.+.|.+.+.   +++++.+++|+.++.+++.+ .|++. +|++++|+ .||-|-+.+. +.+.++.............
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v-~v~l~~dG~~~~a~-llVgADG~~S~vR~~~~~~~~~~~~y~~~~  182 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGV-TVTLSFDGETLDAD-LLVGADGANSAVRRAAGIAEFSGRDYGQTA  182 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCce-EEEEcCCCcEEecC-EEEECCCCchHHHHhcCCCCccCCCCCceE
Confidence            44555555552   58999999999999998764 48888 99999998 5777777765 4666662111111334444


Q ss_pred             EEEEEeec
Q 042352          324 VCLYFSAD  331 (445)
Q Consensus       324 ~~v~~~~~  331 (445)
                      +.+.+..+
T Consensus       183 l~~~~~~~  190 (387)
T COG0654         183 LVANVEPE  190 (387)
T ss_pred             EEEEeecC
Confidence            55555443

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.06  E-value=8.7e-10  Score=107.75  Aligned_cols=49  Identities=20%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR  310 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~  310 (445)
                      |++++.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+. +.+.++
T Consensus       127 gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~-~vV~AdG~~S~vr~~~g  176 (392)
T PRK08773        127 GVQLHCPARVVALEQDADR-VRLRLDDGRRLEAA-LAIAADGAASTLRELAG  176 (392)
T ss_pred             CCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeC-EEEEecCCCchHHHhhc
Confidence            8999999999999987765 56888888889998 7999998875 344543

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.06  E-value=1e-08  Score=100.38  Aligned_cols=42  Identities=31%  Similarity=0.463  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.+||+|||||++|+.+|..++.+|++|+++|+++...|..+
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs   52 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS   52 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence            779999999999999999999999999999999999888554

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.06  E-value=7.8e-10  Score=111.10  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      |++.+||+|||||++|+++|+.|+++|++|+|+||++..+|-.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS   45 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            3467999999999999999999999999999999998766644

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.06  E-value=5.1e-08  Score=91.30  Aligned_cols=37  Identities=41%  Similarity=0.478  Sum_probs=34.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +||+|||||++||++|+.|++.|.+|+|+|++..++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            6999999999999999999999999999999887654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.06  E-value=1.2e-09  Score=107.69  Aligned_cols=40  Identities=33%  Similarity=0.541  Sum_probs=37.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      +.+||+|||||++|++||+.|+++|++|+|+||.+.+|..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            4699999999999999999999999999999999888754

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.04  E-value=1.2e-09  Score=109.90  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=37.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      |+.++||+|||||++|+++|+.|+++|++|+|+||++..+|
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G   43 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG   43 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence            45679999999999999999999999999999999976555

>PRK06847 hypothetical protein; Provisional

Probab=99.04  E-value=1.1e-09  Score=106.48  Aligned_cols=44  Identities=23%  Similarity=0.188  Sum_probs=37.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      |++|+++++|++|+.++++ +.|++.+|+++.++ .||.|.+.+..
T Consensus       121 gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad-~vI~AdG~~s~  164 (375)
T PRK06847        121 GADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYD-LVVGADGLYSK  164 (375)
T ss_pred             CCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcC-EEEECcCCCcc
Confidence            8899999999999887655 67888899889998 79999998753

>PRK06184 hypothetical protein; Provisional

Probab=99.02  E-value=1.6e-09  Score=109.34  Aligned_cols=57  Identities=28%  Similarity=0.424  Sum_probs=45.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc--ceeeeccCCeeecccccchhccChhHHHhhcccCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG--RVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL  120 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG--~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl  120 (445)
                      +++||+|||||++||++|..|++.|++|+|+||++.+.-  ++.                 ...+...++++++|+
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~-----------------~l~~~~~e~l~~lGl   60 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGK-----------------GIQPRTQEVFDDLGV   60 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccce-----------------eecHHHHHHHHHcCc
Confidence            568999999999999999999999999999999876531  111                 124667777887775

>PRK07588 hypothetical protein; Provisional

Probab=99.02  E-value=1e-09  Score=107.26  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=42.2

Q ss_pred             HHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhc
Q 042352          252 NQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLL  309 (445)
Q Consensus       252 ~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll  309 (445)
                      +.|.+.++ +++|+++++|++|+.++++ +.|++++|++++++ .||.|.+.+.. .+.+
T Consensus       107 ~~L~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d-~vIgADG~~S~vR~~~  164 (391)
T PRK07588        107 AAIYTAIDGQVETIFDDSIATIDEHRDG-VRVTFERGTPRDFD-LVIGADGLHSHVRRLV  164 (391)
T ss_pred             HHHHHhhhcCeEEEeCCEEeEEEECCCe-EEEEECCCCEEEeC-EEEECCCCCccchhhc
Confidence            33333333 6899999999999988765 66888999889997 79999888653 4443

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.01  E-value=1.4e-09  Score=107.35  Aligned_cols=59  Identities=25%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             ccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeC---CCc--eEEeccEEEEcCChhHH
Q 042352          246 GICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLA---NGE--TLKSEIGVILAVEEPEA  305 (445)
Q Consensus       246 G~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~---~g~--~i~a~~~VV~a~~~~~~  305 (445)
                      +-..+.+.|.+.++  |++|+++++|++|..+++++++|...   +|+  +++|+ .||+|++-...
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEES-EEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeee-EEEeccCcccc
Confidence            33456666666553  89999999999999998888888876   454  48898 89999998664

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06753 hypothetical protein; Provisional

Probab=99.01  E-value=2.2e-09  Score=104.25  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=44.6

Q ss_pred             cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352          249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR  310 (445)
Q Consensus       249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~  310 (445)
                      .+.+.|.+.+++.+|+++++|++|+.++++ +.|++.+|++++++ .||-|-+.+. +.+.+.
T Consensus        99 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~-~vigadG~~S~vR~~~~  159 (373)
T PRK06753         99 TLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHFADGESEAFD-LCIGADGIHSKVRQSVN  159 (373)
T ss_pred             HHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEECCCCEEecC-EEEECCCcchHHHHHhC
Confidence            445555555555689999999999877654 77888899889997 6888888765 455544

>PRK06834 hypothetical protein; Provisional

Probab=99.00  E-value=2.6e-09  Score=106.73  Aligned_cols=49  Identities=18%  Similarity=0.170  Sum_probs=39.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR  310 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~  310 (445)
                      |++|+.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+.. .+.++
T Consensus       114 gv~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~a~-~vVgADG~~S~vR~~lg  163 (488)
T PRK06834        114 GVPIYRGREVTGFAQDDTG-VDVELSDGRTLRAQ-YLVGCDGGRSLVRKAAG  163 (488)
T ss_pred             CCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeC-EEEEecCCCCCcHhhcC
Confidence            8999999999999988765 66777888889998 69999988763 44553

>TIGR00275 flavoprotein, HI0933 family

Probab=99.00  E-value=1.1e-09  Score=106.79  Aligned_cols=36  Identities=39%  Similarity=0.661  Sum_probs=33.9

Q ss_pred             EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           52 IVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        52 iIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +|||||++||+||+.|+++|++|+|+||++.+|+.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~   36 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL   36 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence            699999999999999999999999999999998754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.99  E-value=1.6e-09  Score=106.43  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR  310 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~  310 (445)
                      +.+.|.+.+.  |++++.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+. +.+.++
T Consensus       113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vI~AdG~~S~vr~~~g  174 (403)
T PRK07333        113 LINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEAR-LLVAADGARSKLRELAG  174 (403)
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeC-EEEEcCCCChHHHHHcC
Confidence            3444444332  8999999999999887765 66888889889998 7999988865 344443

>PRK09126 hypothetical protein; Provisional

Probab=98.99  E-value=7.9e-10  Score=108.12  Aligned_cols=49  Identities=27%  Similarity=0.307  Sum_probs=39.7

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR  310 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~  310 (445)
                      |++|+.+++|++++.+++. +.|++.+|++++|+ .||.|.+... +.+.++
T Consensus       125 g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~-~vI~AdG~~S~vr~~~g  174 (392)
T PRK09126        125 GIELLTGTRVTAVRTDDDG-AQVTLANGRRLTAR-LLVAADSRFSATRRQLG  174 (392)
T ss_pred             CcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeC-EEEEeCCCCchhhHhcC
Confidence            8999999999999887654 67888889889998 6999998864 445553

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.98  E-value=3.6e-09  Score=104.30  Aligned_cols=43  Identities=33%  Similarity=0.456  Sum_probs=37.7

Q ss_pred             ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +++.+...+||+|||||++||++|..|++.|++|+|+|+++..
T Consensus        11 ~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         11 LPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            3444556799999999999999999999999999999998764

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.98  E-value=1.6e-08  Score=102.60  Aligned_cols=42  Identities=33%  Similarity=0.590  Sum_probs=38.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+||+|||+| +|++||..+++.|.+|+|+||.+.+||.+.
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            347999999999 899999999999999999999999999654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.97  E-value=3.9e-09  Score=103.62  Aligned_cols=50  Identities=20%  Similarity=0.177  Sum_probs=41.5

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~  311 (445)
                      |++|+.+++|++|+.++++ +.|++.+|++++|+ .||.|.+.+. +.++++.
T Consensus       126 gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~-~vVgAdG~~S~vR~~lg~  176 (405)
T PRK05714        126 DIGLLANARLEQMRRSGDD-WLLTLADGRQLRAP-LVVAADGANSAVRRLAGC  176 (405)
T ss_pred             CCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeC-EEEEecCCCchhHHhcCC
Confidence            8999999999999988765 67888899889998 6999999876 4566654

>PRK07190 hypothetical protein; Provisional

Probab=98.97  E-value=8.2e-09  Score=103.07  Aligned_cols=50  Identities=24%  Similarity=0.225  Sum_probs=40.5

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~  311 (445)
                      |++|+.+++|++|+.++++ +.+.+.+|++++|+ .||.|.+.... .+.++-
T Consensus       123 Gv~v~~~~~v~~l~~~~~~-v~v~~~~g~~v~a~-~vVgADG~~S~vR~~lgi  173 (487)
T PRK07190        123 GAAVKRNTSVVNIELNQAG-CLTTLSNGERIQSR-YVIGADGSRSFVRNHFNV  173 (487)
T ss_pred             CCEEEeCCEEEEEEEcCCe-eEEEECCCcEEEeC-EEEECCCCCHHHHHHcCC
Confidence            8999999999999988766 55677788889998 69999998764 555543

>PRK07045 putative monooxygenase; Reviewed

Probab=98.96  E-value=7.3e-09  Score=101.11  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH-Hhhh
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE-ADKL  308 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~l  308 (445)
                      |++++++++|+.|+.++++ ++.|++.+|++++++ .||.|.+... +.+.
T Consensus       121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~-~vIgADG~~S~vR~~  170 (388)
T PRK07045        121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPT-VLVGADGARSMIRDD  170 (388)
T ss_pred             CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECC-EEEECCCCChHHHHH
Confidence            7899999999999987665 357888899889998 6888888876 4553

>PRK05868 hypothetical protein; Validated

Probab=98.96  E-value=6.7e-09  Score=100.52  Aligned_cols=59  Identities=12%  Similarity=0.050  Sum_probs=43.5

Q ss_pred             HHHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352          251 PNQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ  311 (445)
Q Consensus       251 ~~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~  311 (445)
                      .+.|.+.+. |++++++++|++|+.++++ +.|+++||++++++ .||-|-+.+. +.+.+..
T Consensus       108 ~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~ad-lvIgADG~~S~vR~~~~~  168 (372)
T PRK05868        108 VELLYGATQPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFD-LVIGADGLHSNVRRLVFG  168 (372)
T ss_pred             HHHHHHhccCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeC-EEEECCCCCchHHHHhcC
Confidence            333433333 8899999999999876544 77889999999998 6888888765 4555544

>PRK07121 hypothetical protein; Validated

Probab=98.96  E-value=1.7e-08  Score=101.39  Aligned_cols=41  Identities=32%  Similarity=0.526  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.++++|.+|+|+||....||..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s   59 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT   59 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            46899999999999999999999999999999999988854

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.95  E-value=2e-09  Score=104.95  Aligned_cols=59  Identities=15%  Similarity=0.238  Sum_probs=42.9

Q ss_pred             HHHHHHhcCC--C-CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352          250 IPNQIASKLP--F-ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR  310 (445)
Q Consensus       250 l~~~l~~~l~--g-~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~  310 (445)
                      +.+.|.+.+.  | ++|+.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+. +.+.+.
T Consensus       108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~-~vi~adG~~S~vr~~l~  170 (385)
T TIGR01988       108 LQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTLDDGQQLRAR-LLVGADGANSKVRQLAG  170 (385)
T ss_pred             HHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEECCCCEEEee-EEEEeCCCCCHHHHHcC
Confidence            3444444332  4 899999999999887755 67888899889998 6888888764 344443

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.95  E-value=3.7e-09  Score=103.79  Aligned_cols=50  Identities=22%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~  311 (445)
                      |++++++++|++|+.++++ +.|++.+|++++|+ .||.|.+... +.+.+..
T Consensus       126 ~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~-lvIgADG~~S~vR~~~~~  176 (405)
T PRK08850        126 NVTLLMPARCQSIAVGESE-AWLTLDNGQALTAK-LVVGADGANSWLRRQMDI  176 (405)
T ss_pred             CeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeC-EEEEeCCCCChhHHHcCC
Confidence            7899999999999887655 67888899999998 7999998865 4555544

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.95  E-value=4.8e-09  Score=104.78  Aligned_cols=41  Identities=34%  Similarity=0.458  Sum_probs=36.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGR   86 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~   86 (445)
                      +..+||+|||||++|+.||+.+++.|.+|+++|++ +.+|+.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            45699999999999999999999999999999997 466653

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.94  E-value=5.8e-09  Score=102.67  Aligned_cols=59  Identities=15%  Similarity=0.185  Sum_probs=47.3

Q ss_pred             cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhc
Q 042352          249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLL  309 (445)
Q Consensus       249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll  309 (445)
                      .+.+.|.+.++++.++++++|++|+.++++ +.|++++|++++++ .||.|.+.+.. .+.+
T Consensus       106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad-~vVgADG~~S~vR~~l  165 (414)
T TIGR03219       106 DFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCD-LLIGADGIKSALRDYV  165 (414)
T ss_pred             HHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEEcCCCEEEee-EEEECCCccHHHHHHh
Confidence            566777777766679999999999987665 77888899889998 79999999874 4444

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08013 oxidoreductase; Provisional

Probab=98.94  E-value=3e-09  Score=104.15  Aligned_cols=50  Identities=14%  Similarity=0.122  Sum_probs=40.3

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~  311 (445)
                      |++++++++|++|+.++++ +.|++.+|++++|+ .||-|-+.+. +.+.+.-
T Consensus       126 ~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~-lvVgADG~~S~vR~~~~~  176 (400)
T PRK08013        126 DITLLAPAELQQVAWGENE-AFLTLKDGSMLTAR-LVVGADGANSWLRNKADI  176 (400)
T ss_pred             CcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEee-EEEEeCCCCcHHHHHcCC
Confidence            7899999999999887765 67888899999998 6888888765 4555544

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.94  E-value=8.7e-09  Score=100.91  Aligned_cols=38  Identities=39%  Similarity=0.658  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ...||+|||||++||++|..|++.|++|+|+||++.++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            45799999999999999999999999999999987653

>PRK06116 glutathione reductase; Validated

Probab=98.94  E-value=3.7e-09  Score=105.17  Aligned_cols=42  Identities=36%  Similarity=0.567  Sum_probs=38.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.+|||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            35699999999999999999999999999999985 8899764

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.91  E-value=2.4e-08  Score=101.45  Aligned_cols=41  Identities=32%  Similarity=0.512  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      .++||+|||+|.+||+||..|+++|.+|+|||+....||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            36899999999999999999999999999999998888854

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.91  E-value=8.6e-09  Score=100.58  Aligned_cols=54  Identities=15%  Similarity=0.182  Sum_probs=45.3

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+..+|+...+  |+.|..||+|++|....++..+|+|..| .+++. +||.|++.|.
T Consensus       188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~-~~VNaaGvWA  243 (856)
T KOG2844|consen  188 GLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETE-CVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecc-eEEechhHHH
Confidence            34455554443  9999999999999999888889999999 58998 6999999997

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.91  E-value=6e-09  Score=102.59  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||+|.+||+||..++ +|.+|+|+||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999974 79999999999887774

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.91  E-value=6.7e-09  Score=101.15  Aligned_cols=49  Identities=16%  Similarity=0.258  Sum_probs=40.6

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR  310 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~  310 (445)
                      +++++.+++|++++.++++ +.|++++|++++++ .||.|.+.+.. .+.+.
T Consensus       125 ~i~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~~~-lvIgADG~~S~vR~~~g  174 (384)
T PRK08849        125 NLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAK-WVIGADGANSQVRQLAG  174 (384)
T ss_pred             CeEEECCCceeEEEEcCCe-EEEEECCCCEEEee-EEEEecCCCchhHHhcC
Confidence            7899999999999988765 67889999999998 79999998764 44443

>PRK10015 oxidoreductase; Provisional

Probab=98.91  E-value=1.3e-08  Score=100.25  Aligned_cols=39  Identities=36%  Similarity=0.516  Sum_probs=36.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      .++||+|||||++|++||+.|+++|++|+|+||.+.+|-
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~   42 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC   42 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            469999999999999999999999999999999988764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.91  E-value=6.5e-09  Score=101.51  Aligned_cols=38  Identities=34%  Similarity=0.494  Sum_probs=34.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ++.+||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            45689999999999999999999999999999998754

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.89  E-value=5.2e-07  Score=87.38  Aligned_cols=126  Identities=20%  Similarity=0.176  Sum_probs=70.8

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQE  339 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~  339 (445)
                      ++.++++++|++|+.+++. +.|++.+|++++|+ .||-|.++...    ...    ..-.....-+.+.++++.+....
T Consensus       100 ~~~~~~~~~V~~i~~~~~~-~~v~~~~g~~i~a~-~VvDa~g~~~~----~~~----~~~~Q~f~G~~v~~~~~~f~~~~  169 (374)
T PF05834_consen  100 GGVIRLNARVTSIEETGDG-VLVVLADGRTIRAR-VVVDARGPSSP----KAR----PLGLQHFYGWEVETDEPVFDPDT  169 (374)
T ss_pred             CCeEEEccEEEEEEecCce-EEEEECCCCEEEee-EEEECCCcccc----ccc----ccccceeEEEEEeccCCCCCCCc
Confidence            5689999999999998864 77889999999998 69888885432    110    01122233334455555222222


Q ss_pred             CeEE-ec-CCC-CcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCC
Q 042352          340 PVLF-LN-GSG-KGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGK  403 (445)
Q Consensus       340 ~~~~-~~-~~~-~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~  403 (445)
                      ..+. +. ... .++...+..|-.       +++.+++..........+.+++.+.+.+-|++ .+.
T Consensus       170 ~~lMD~r~~~~~~~~~F~Y~lP~~-------~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~-~g~  228 (374)
T PF05834_consen  170 ATLMDFRVPQSADGPSFLYVLPFS-------EDRALVEETSFSPRPALPEEELKARLRRYLER-LGI  228 (374)
T ss_pred             eEEEEecccCCCCCceEEEEEEcC-------CCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHH-cCC
Confidence            2221 11 000 112222333321       24456654333433446788888888888888 443

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.89  E-value=9.9e-09  Score=99.60  Aligned_cols=63  Identities=17%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChhHHhhhcCCC
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEPEADKLLRQP  312 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~~~~~ll~~p  312 (445)
                      .+.+.|.+.+.  |++|+++++|++++.+++++..+.+.+|+  .++++ .||+|++......|..+.
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD-~VVLAtGrf~s~GL~a~~  326 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRAR-HFVLATGSFFSGGLVAER  326 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECC-EEEEeCCCcccCceeccC
Confidence            56777776663  99999999999999877665555555553  48898 799999987666666553

>PLN02697 lycopene epsilon cyclase

Probab=98.89  E-value=9e-07  Score=88.55  Aligned_cols=34  Identities=32%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+||+|||||++||++|..|++.|++|+|+|+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            4689999999999999999999999999999975

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.88  E-value=1.4e-08  Score=99.22  Aligned_cols=38  Identities=32%  Similarity=0.404  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+||+|||||++||++|+.|++.|++|+|+|++....
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            45899999999999999999999999999999987753

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.88  E-value=1.7e-08  Score=103.12  Aligned_cols=41  Identities=37%  Similarity=0.535  Sum_probs=38.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+||+|||||++||+||+.++++|.+|+|+||....||.+.
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            68999999999999999999999999999999999998764

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.87  E-value=7e-09  Score=101.04  Aligned_cols=50  Identities=22%  Similarity=0.196  Sum_probs=40.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~  311 (445)
                      |++++.+++|++|+.++++ +.|++.+|++++|+ .||.|.+.+. +.+.+..
T Consensus       120 gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad-~vV~AdG~~S~vr~~l~~  170 (382)
T TIGR01984       120 NIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAK-LLIAADGANSKVRELLSI  170 (382)
T ss_pred             CcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEee-EEEEecCCChHHHHHcCC
Confidence            7899999999999887665 67888888889998 7999999875 4555544

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.87  E-value=3e-08  Score=100.88  Aligned_cols=39  Identities=28%  Similarity=0.407  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      +..+||+|||||++||++|..|++.|++|+|+||+..++
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            456899999999999999999999999999999997654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.86  E-value=2.1e-09  Score=105.81  Aligned_cols=39  Identities=36%  Similarity=0.575  Sum_probs=33.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ||+|||||++|++||..+++.|.+|+|+|+.+.+||...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            899999999999999999999999999999999999764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=1.2e-08  Score=105.04  Aligned_cols=39  Identities=38%  Similarity=0.456  Sum_probs=35.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+||+|||||++||+||..+++.|.+|+|+|+...+|+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~   72 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR   72 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            368999999999999999999999999999999877764

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.86  E-value=2.4e-08  Score=96.96  Aligned_cols=44  Identities=43%  Similarity=0.600  Sum_probs=40.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      +...+|+|||||+|||++|..|.+.|++|+|+||.+.+||....
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y   47 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY   47 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence            34679999999999999999999999999999999999996654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.86  E-value=1.7e-08  Score=100.13  Aligned_cols=38  Identities=42%  Similarity=0.694  Sum_probs=36.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcce
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRV   87 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~   87 (445)
                      ||+|||||++||+||+.++++| .+|+|+||.+..||.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            8999999999999999999999 9999999999988854

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.86  E-value=4.2e-08  Score=95.87  Aligned_cols=35  Identities=40%  Similarity=0.538  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999874

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.86  E-value=2.5e-08  Score=102.33  Aligned_cols=40  Identities=28%  Similarity=0.287  Sum_probs=36.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||||++||+||..++++|.+|+|+||....||.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~   88 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH   88 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence            4589999999999999999999999999999998877763

>PRK06185 hypothetical protein; Provisional

Probab=98.85  E-value=2.6e-08  Score=97.91  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            468999999999999999999999999999999754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.85  E-value=9.1e-09  Score=100.75  Aligned_cols=49  Identities=20%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR  310 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~  310 (445)
                      |++++.+++|++|..++++ +.|++.+|++++++ .||.|.+.+. +.+.++
T Consensus       127 g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~-~vI~AdG~~S~vr~~~~  176 (395)
T PRK05732        127 GVTLHCPARVANVERTQGS-VRVTLDDGETLTGR-LLVAADGSHSALREALG  176 (395)
T ss_pred             CcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeC-EEEEecCCChhhHHhhC
Confidence            7899999999999877655 66888888889998 6999999875 344443

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.84  E-value=1.1e-08  Score=101.05  Aligned_cols=59  Identities=14%  Similarity=0.049  Sum_probs=43.3

Q ss_pred             ccCccccHHHHHHhcCC--CCcEEeCceeeEEEec--CCCcCeEEeCC-CceEEeccEEEEcCCh
Q 042352          243 PANGICQIPNQIASKLP--FESILLNTRVLSIDFD--EQNMPNVRLAN-GETLKSEIGVILAVEE  302 (445)
Q Consensus       243 ~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~--~~~~~~V~~~~-g~~i~a~~~VV~a~~~  302 (445)
                      +.++...+.+.|.+.++  |++|+++++|++|..+  ++.+++|...+ +.+++|+ .||+|++-
T Consensus       118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak-~VIlAtGG  181 (432)
T TIGR02485       118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQ-ALVLAAGG  181 (432)
T ss_pred             ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcC-EEEEcCCC
Confidence            33455567777766554  9999999999999876  34556666543 3478897 79999995

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.83  E-value=5.1e-08  Score=99.18  Aligned_cols=42  Identities=43%  Similarity=0.718  Sum_probs=38.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--CCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--AVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--~~GG~~~   88 (445)
                      ..+||+|||+|.+||+||..+++.|.+|+||||.+  ..||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  7888653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.83  E-value=7.9e-08  Score=80.72  Aligned_cols=41  Identities=22%  Similarity=0.379  Sum_probs=33.7

Q ss_pred             CCcEE-eCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCCh
Q 042352          260 FESIL-LNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEE  302 (445)
Q Consensus       260 g~~i~-~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~  302 (445)
                      |++|. .+.+|+.|...+++ +.|.+.+|..+.++ +||+|++.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d-~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRAD-AVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeC-EEEECCCC
Confidence            54554 56799999998876 78889999999998 79999974

>PRK12839 hypothetical protein; Provisional

Probab=98.83  E-value=8.3e-08  Score=97.62  Aligned_cols=42  Identities=29%  Similarity=0.505  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||+|.+||+||+.|+++|.+|+|+|+...+||.+.
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            468999999999999999999999999999999999999765

>PRK11445 putative oxidoreductase; Provisional

Probab=98.83  E-value=3.3e-08  Score=94.96  Aligned_cols=62  Identities=26%  Similarity=0.290  Sum_probs=44.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN  121 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~  121 (445)
                      ++||+|||||++|+++|..|++. ++|+|+|+++..+-.-...       ..|.    ...+...++++++|+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~-------~~g~----~l~~~~~~~L~~lgl~   62 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSK-------PCGG----LLAPDAQKSFAKDGLT   62 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccC-------cCcC----ccCHHHHHHHHHcCCC
Confidence            37999999999999999999999 9999999987643110000       1111    1245677778877764

>PLN02463 lycopene beta cyclase

Probab=98.83  E-value=5.3e-08  Score=95.70  Aligned_cols=37  Identities=30%  Similarity=0.481  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            3468999999999999999999999999999998653

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.82  E-value=8.1e-08  Score=97.97  Aligned_cols=38  Identities=45%  Similarity=0.707  Sum_probs=35.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +..+||+|||||++||++|+.|++.|++|+|+||++.+
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            45689999999999999999999999999999998754

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.82  E-value=3.9e-08  Score=96.14  Aligned_cols=49  Identities=16%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR  310 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~  310 (445)
                      |++++.+++|++|+.++++ +.|++.+|++++|+ .||.|.+.+.. .+.++
T Consensus       127 gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~-~vI~AdG~~S~vR~~~~  176 (391)
T PRK08020        127 NVTLRCPASLQALQRDDDG-WELTLADGEEIQAK-LVIGADGANSQVRQMAG  176 (391)
T ss_pred             CcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeC-EEEEeCCCCchhHHHcC
Confidence            8899999999999877655 67888888889998 79999998763 45554

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=3.5e-08  Score=100.75  Aligned_cols=40  Identities=33%  Similarity=0.439  Sum_probs=36.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||||.+||+||..+++.|.+|+|+||....||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            3589999999999999999999999999999999887764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.82  E-value=6.1e-08  Score=98.59  Aligned_cols=42  Identities=31%  Similarity=0.508  Sum_probs=38.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||+|.+|++||..++++|.+|+||||....||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            468999999999999999999999999999999998888543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.81  E-value=2.5e-08  Score=95.68  Aligned_cols=62  Identities=16%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCC--ceEEeccEEEEcCChhHHhhhcCC
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANG--ETLKSEIGVILAVEEPEADKLLRQ  311 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g--~~i~a~~~VV~a~~~~~~~~ll~~  311 (445)
                      .+.++|.+.++  |++|+.+++|++|..+++++..|.+.++  ..++|+ +||+|++.|....|+.+
T Consensus       264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD-~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRAD-HFVLASGSFFSNGLVAE  329 (419)
T ss_pred             HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECC-EEEEccCCCcCHHHHhh
Confidence            44555555553  9999999999999998887777887776  379998 79999999976667655

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.80  E-value=7.5e-08  Score=98.38  Aligned_cols=42  Identities=40%  Similarity=0.529  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||+|.+|++||+.++++|++|+|+|+++.+||.+.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence            468999999999999999999999999999999999999664

>PRK09897 hypothetical protein; Provisional

Probab=98.80  E-value=5.5e-08  Score=97.11  Aligned_cols=41  Identities=24%  Similarity=0.443  Sum_probs=35.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCC-cceee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVG-GRVRT   89 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~G-G~~~s   89 (445)
                      ++|+|||||++|+++|..|.+.+  .+|+|+|++..+| |.+.+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays   45 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS   45 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence            58999999999999999999874  5899999998888 55443

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.80  E-value=7.5e-08  Score=90.43  Aligned_cols=38  Identities=37%  Similarity=0.538  Sum_probs=34.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +||+|||||++||+||..|++.|++|+|+|+++ +||++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~   38 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL   38 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence            689999999999999999999999999999876 67644

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.79  E-value=1.2e-07  Score=92.34  Aligned_cols=35  Identities=40%  Similarity=0.562  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            47999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.79  E-value=4.6e-08  Score=100.05  Aligned_cols=38  Identities=29%  Similarity=0.438  Sum_probs=35.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ||+|||||++||+||..++++|.+|+|+||....||.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            89999999999999999999999999999998877644

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=4.9e-08  Score=99.96  Aligned_cols=40  Identities=28%  Similarity=0.312  Sum_probs=36.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            4689999999999999999999999999999998776663

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.79  E-value=1.4e-07  Score=96.33  Aligned_cols=41  Identities=32%  Similarity=0.543  Sum_probs=38.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ...+||+|||+|++||+||+.++++|.+|+||||....||.
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            35689999999999999999999999999999999988884

>TIGR00551 nadB L-aspartate oxidase

Probab=98.79  E-value=5.5e-08  Score=97.56  Aligned_cols=39  Identities=41%  Similarity=0.622  Sum_probs=35.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||..+++.|. |+|+||.+..||.+
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s   40 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS   40 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence            4799999999999999999999998 99999998877743

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06126 hypothetical protein; Provisional

Probab=98.79  E-value=2.1e-08  Score=102.29  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+||+|||||++||++|..|+++|++|+|+||++.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3468999999999999999999999999999998754

>PRK08244 hypothetical protein; Provisional

Probab=98.79  E-value=3.2e-08  Score=99.67  Aligned_cols=56  Identities=30%  Similarity=0.445  Sum_probs=44.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC--cceeeeccCCeeecccccchhccChhHHHhhcccCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG--GRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL  120 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G--G~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl  120 (445)
                      ++||+|||||++||++|..|++.|++|+|+||++...  |++                 ...++...++++++|+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra-----------------~~l~~~~~e~l~~lGl   59 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKA-----------------LTLHPRTLEILDMRGL   59 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce-----------------eEecHHHHHHHHhcCc
Confidence            3799999999999999999999999999999986531  111                 1235667778887776

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.6e-07  Score=83.60  Aligned_cols=241  Identities=15%  Similarity=0.203  Sum_probs=131.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--------------------Ceeecccccchhc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--------------------GFLLDRGFQIFIT  106 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~~~~  106 (445)
                      +.+||+|+|.|+--..-+..|+..|.+|+++|+|+.-|+-.++....                    .+.+|+-+..++.
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A   84 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA   84 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence            46999999999999999999999999999999999999988875211                    1344555554444


Q ss_pred             cChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHH-hhhhh-hhhhcchH
Q 042352          107 AYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLI-GLTRI-RVLIKTDE  180 (445)
Q Consensus       107 ~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~  180 (445)
                      ... +..++.+-++.    +++. ++.+++-++++++++.      +....+.++.+++..+-.. .+..+ ........
T Consensus        85 ~s~-l~~iLi~t~v~~YLefk~i-~~~~~~~~~k~~kVP~------ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~  156 (434)
T COG5044          85 NSE-LLKILIETGVTEYLEFKQI-SGSFLYRPGKIYKVPY------NEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKS  156 (434)
T ss_pred             cch-HHHHHHHhChHhheeeeec-cccEEecCCcEEECCc------cHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhh
Confidence            333 33333333432    2221 2345556677777753      3333445555555554321 11111 11111000


Q ss_pred             HHhc--CCCCcHHHHHHHcCCCHHHHHHhhhhhhccc-ccCCccchHHHHHHHH--HHHhhcCCCccccCccccHHHHHH
Q 042352          181 QILT--SSEVPIIELLRNIGFSDSIIDSFFRPFFGGI-FFDKELETSSRLFDFI--FKCLALGDNTIPANGICQIPNQIA  255 (445)
Q Consensus       181 ~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~gG~~~l~~~l~  255 (445)
                      .+..  .+..++....+..+++.+..+.+...++-.+ ...+..+..-++...+  +..+......+|..|.+.|.+.++
T Consensus       157 ~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~El~QGFa  236 (434)
T COG5044         157 TLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLDLDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGELSQGFA  236 (434)
T ss_pred             hchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhccccCCchHHHHHHHHHHHhhcccCCCcceeeccCchhhhHHHH
Confidence            1111  1122333334446665543333322221111 1111222222222222  122223357789999999999999


Q ss_pred             hcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEE
Q 042352          256 SKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVIL  298 (445)
Q Consensus       256 ~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~  298 (445)
                      +...  |+++.+|+++.+|....+ +-+|.. ++.+..|.+ ||.
T Consensus       237 Rssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~K-iI~  278 (434)
T COG5044         237 RSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGK-IIS  278 (434)
T ss_pred             HhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCc-ccC
Confidence            8664  999999999999988764 212222 233567764 443

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.78  E-value=7.1e-08  Score=99.26  Aligned_cols=51  Identities=27%  Similarity=0.225  Sum_probs=40.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDR   99 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~   99 (445)
                      .+||+|||||++||+||..+++.|.+|+|+||....||. +....+|.....
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~-s~~a~Ggi~a~~   58 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH-TVMAEGGCAAAM   58 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc-ceecCccceeec
Confidence            589999999999999999999999999999999876653 333334444433

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.77  E-value=6.2e-08  Score=99.43  Aligned_cols=41  Identities=27%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||..++++|.+|+|+||....||.+
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t   68 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT   68 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence            46899999999999999999999999999999988877643

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.76  E-value=4.4e-08  Score=100.09  Aligned_cols=40  Identities=20%  Similarity=0.402  Sum_probs=35.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||||++||+||..+++.  |.+|+|+||....||.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            457999999999999999999987  4899999998877763

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=1.5e-07  Score=95.69  Aligned_cols=39  Identities=28%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA-VGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~-~GG~   86 (445)
                      ..+||+|||||.+||+||..+ +.|.+|+|+||... .||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~   45 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC   45 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence            357999999999999999999 89999999999865 4443

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.74  E-value=1.4e-07  Score=96.57  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG---RPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G---~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||..+++.|   .+|+|+||....||.+
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            579999999999999999999998   8999999998877743

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.74  E-value=4.1e-08  Score=96.19  Aligned_cols=35  Identities=31%  Similarity=0.595  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .+|+|||||++||++|..|+++|++|+|+|+.+..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            58999999999999999999999999999998654

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.73  E-value=5.8e-08  Score=96.73  Aligned_cols=33  Identities=33%  Similarity=0.500  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +||+|||||++||+||..++++|.+|+|+||..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            799999999999999999999999999999975

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=8.9e-08  Score=97.94  Aligned_cols=41  Identities=27%  Similarity=0.398  Sum_probs=37.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||.+||+||..+++.|.+|+|+||....||.+
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            46899999999999999999999999999999987777644

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.72  E-value=2.4e-07  Score=94.73  Aligned_cols=43  Identities=33%  Similarity=0.510  Sum_probs=39.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+||+|||+|.+|++||+.++++|++|+|||+++..||.+.
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            3468999999999999999999999999999999999998664

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.72  E-value=6.5e-08  Score=93.84  Aligned_cols=49  Identities=6%  Similarity=0.074  Sum_probs=38.1

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~  311 (445)
                      +++++.+++|++|..++++ +.|.+.++ +++|+ .||-|-+.+.. .+.+..
T Consensus       119 ~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~ad-lvIgADG~~S~vR~~l~~  168 (374)
T PRK06617        119 LITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCN-LLIICDGANSKVRSHYFA  168 (374)
T ss_pred             CcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeC-EEEEeCCCCchhHHhcCC
Confidence            4789999999999887765 66888776 89998 79988888753 455544

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.72  E-value=1.6e-08  Score=95.75  Aligned_cols=41  Identities=20%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCCh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEE  302 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~  302 (445)
                      +.+|. +.+|++|..+++++++|.+.+|+.+.++ .||+|++.
T Consensus       110 nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~-~vVlaTGt  150 (392)
T PF01134_consen  110 NLTII-QGEVTDLIVENGKVKGVVTKDGEEIEAD-AVVLATGT  150 (392)
T ss_dssp             TEEEE-ES-EEEEEECTTEEEEEEETTSEEEEEC-EEEE-TTT
T ss_pred             CeEEE-EcccceEEecCCeEEEEEeCCCCEEecC-EEEEeccc
Confidence            66774 6899999999989999999999999998 79999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.72  E-value=6e-08  Score=98.64  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=42.6

Q ss_pred             cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      .+.+.|.+.++...++.+++|++|+.++++ +.|++.+|++++++ .||.|-+.+..
T Consensus       195 ~L~~~L~~alg~~~i~~g~~V~~I~~~~d~-VtV~~~dG~ti~aD-lVVGADG~~S~  249 (668)
T PLN02927        195 TLQQILARAVGEDVIRNESNVVDFEDSGDK-VTVVLENGQRYEGD-LLVGADGIWSK  249 (668)
T ss_pred             HHHHHHHhhCCCCEEEcCCEEEEEEEeCCE-EEEEECCCCEEEcC-EEEECCCCCcH
Confidence            456666666643347889999999987765 66888999889998 79999998763

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.72  E-value=2.2e-08  Score=98.87  Aligned_cols=69  Identities=26%  Similarity=0.184  Sum_probs=48.6

Q ss_pred             cccccccccccCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352            9 SLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+.|.+++...-+..|+.-.+...++....+    ....++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093          4 VSSFLPSAPSSAAKSVSRPGLRVLAAAASKK----LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             ccccccccccccccccccccceeeecCCCCC----cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            4445555555556666664444444332222    22346999999999999999999999999999999974

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.71  E-value=1.8e-07  Score=94.62  Aligned_cols=40  Identities=33%  Similarity=0.444  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ...+||+|||||++||+||.+|++.|++|+|+|.  .+||++
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~  248 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQV  248 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCee
Confidence            3469999999999999999999999999999985  478865

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.71  E-value=2.3e-07  Score=94.11  Aligned_cols=40  Identities=30%  Similarity=0.517  Sum_probs=37.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            4689999999999999999999999999999999887763

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.71  E-value=2.1e-07  Score=90.88  Aligned_cols=36  Identities=39%  Similarity=0.544  Sum_probs=34.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ||+|||||++|+++|+.|++.|++|+|+|+++..||
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~   36 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG   36 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence            799999999999999999999999999999987765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02815 L-aspartate oxidase

Probab=98.70  E-value=1.3e-07  Score=96.20  Aligned_cols=41  Identities=22%  Similarity=0.389  Sum_probs=37.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ...+||+|||||++||+||..+++.| +|+|+||....||..
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s   67 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT   67 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence            34689999999999999999999999 999999999888743

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.70  E-value=1.8e-07  Score=94.36  Aligned_cols=40  Identities=33%  Similarity=0.466  Sum_probs=35.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ...+||+|||||++||+||.+|++.|++|+|+|.  ++||++
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~  249 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV  249 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence            3469999999999999999999999999999974  577754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.70  E-value=2.6e-08  Score=102.76  Aligned_cols=39  Identities=33%  Similarity=0.423  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      .+||+|||||++||+||..++++|.+|+|+|+....+|.
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~   43 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH   43 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence            589999999999999999999999999999998876653

>PRK07538 hypothetical protein; Provisional

Probab=98.70  E-value=1.3e-07  Score=93.18  Aligned_cols=35  Identities=34%  Similarity=0.638  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            38999999999999999999999999999998654

>PRK08275 putative oxidoreductase; Provisional

Probab=98.69  E-value=9.9e-08  Score=97.13  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG   85 (445)
                      ..+||+|||||.+||+||..++++  |.+|+|+||....+|
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~   48 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS   48 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            358999999999999999999987  789999999887443

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.69  E-value=6.3e-08  Score=98.62  Aligned_cols=41  Identities=27%  Similarity=0.368  Sum_probs=36.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||.+||+||..+++.|.+|+|+||....||.+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            35899999999999999999999999999999988766633

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.69  E-value=1e-07  Score=96.59  Aligned_cols=39  Identities=28%  Similarity=0.279  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||||++||+||..++ +|.+|+|+||.+..||.
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            4689999999999999999986 59999999999887774

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.69  E-value=1.7e-07  Score=96.16  Aligned_cols=38  Identities=21%  Similarity=0.394  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG   85 (445)
                      .+||+|||||.+||+||..+++.  |.+|+|+||....++
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            58999999999999999999998  999999999876443

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=1.7e-07  Score=95.99  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+||+|||||++||+||+.+++. .+|+|+||....||
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            458999999999999999999987 99999999876555

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.68  E-value=1.1e-07  Score=104.25  Aligned_cols=41  Identities=44%  Similarity=0.636  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||.+..||.+
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            46899999999999999999999999999999999999854

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.67  E-value=9.8e-08  Score=96.03  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||+|.+||+||..+++ |.+|+|+||.+..||.+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            5799999999999999999976 89999999998877743

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.67  E-value=7.5e-08  Score=95.37  Aligned_cols=51  Identities=22%  Similarity=0.230  Sum_probs=38.8

Q ss_pred             CCcEEeCceeeEEEec------CCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC
Q 042352          260 FESILLNTRVLSIDFD------EQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~------~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~  311 (445)
                      +++++++++|++|+.+      ++..+.|++.+|++++|+ .||-|-+.... .+.+.-
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~-llVgADG~~S~vR~~~gi  191 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTK-LLIGADGSNSNVRKAANI  191 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEee-EEEEecCCCChhHHHcCC
Confidence            4799999999999753      223478888999999998 68888888754 555543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.66  E-value=6.3e-08  Score=92.02  Aligned_cols=60  Identities=15%  Similarity=0.158  Sum_probs=47.2

Q ss_pred             cccHHHHHHhcCC---CCcEEeCceeeEEEecCCCcCeEEeCC---C--ceEEeccEEEEcCChhHHhh
Q 042352          247 ICQIPNQIASKLP---FESILLNTRVLSIDFDEQNMPNVRLAN---G--ETLKSEIGVILAVEEPEADK  307 (445)
Q Consensus       247 ~~~l~~~l~~~l~---g~~i~~n~~V~~I~~~~~~~~~V~~~~---g--~~i~a~~~VV~a~~~~~~~~  307 (445)
                      ++.+.+.|.+.+.   |+++++|++|+.|++.+++.+.|.+.|   |  .+++|+ .|++.++...+.-
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~-FVfvGAGG~aL~L  247 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAK-FVFVGAGGGALPL  247 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECC-EEEECCchHhHHH
Confidence            3566777776663   899999999999999988878887642   2  469998 7999999987643

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.64  E-value=3.1e-07  Score=86.11  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~G   84 (445)
                      ||+||||||.+|+.+|..|+++| .+|+|||+.....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            69999999999999999999997 6999999975543

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06996 hypothetical protein; Provisional

Probab=98.62  E-value=4.1e-07  Score=89.04  Aligned_cols=62  Identities=21%  Similarity=0.279  Sum_probs=44.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC----CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQG----RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL  120 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl  120 (445)
                      .+.+||+|||||++|+++|+.|++.|    .+|+|+|+.+...-      ...      .. -...++...++++.+|+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~------~~~------~r-~~~l~~~~~~~L~~lg~   74 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS------AND------PR-AIALSHGSRVLLETLGA   74 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC------CCC------ce-EEEecHHHHHHHHhCCC
Confidence            45689999999999999999999987    47999999764320      000      00 01235667778888775

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.62  E-value=5e-08  Score=96.41  Aligned_cols=43  Identities=42%  Similarity=0.594  Sum_probs=40.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..++|+|||||++||+||.+|.++|++|+|+|+++.+||....
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            4579999999999999999999999999999999999998754

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.61  E-value=1.3e-07  Score=95.18  Aligned_cols=55  Identities=20%  Similarity=0.258  Sum_probs=40.4

Q ss_pred             cHHHHHHhcC---CCCcEEeCceeeEEEecCCCcCeEEeCC-Cc--eEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKL---PFESILLNTRVLSIDFDEQNMPNVRLAN-GE--TLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l---~g~~i~~n~~V~~I~~~~~~~~~V~~~~-g~--~i~a~~~VV~a~~~~~  304 (445)
                      .+.+.|.+.+   .|++|+.++.|++|..+++++++|.+.+ ++  .+.|+ .||+|++-..
T Consensus       137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~  197 (513)
T PRK07512        137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPAR-AVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECC-EEEEcCCCCc
Confidence            4666665544   2799999999999987766667776643 32  47888 7999999864

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.61  E-value=6.2e-06  Score=80.27  Aligned_cols=55  Identities=22%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             ccHHHHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          248 CQIPNQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       248 ~~l~~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      ..+.++|.+.+. |++|+.+++|++|+.++++ +.|++.+|+.+.|+ .||+|++.|.
T Consensus       135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~-~vV~a~G~~~  190 (381)
T TIGR03197       135 PQLCRALLAHAGIRLTLHFNTEITSLERDGEG-WQLLDANGEVIAAS-VVVLANGAQA  190 (381)
T ss_pred             HHHHHHHHhccCCCcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcC-EEEEcCCccc
Confidence            467777777766 8999999999999987655 77888888778998 6999999986

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.60  E-value=1.1e-06  Score=87.90  Aligned_cols=37  Identities=22%  Similarity=0.194  Sum_probs=35.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +||+|||||++|+++|+.|+++|++|+|+|+....||
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence            6999999999999999999999999999999999986

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.59  E-value=4.1e-07  Score=92.71  Aligned_cols=40  Identities=28%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||..++++  |.+|+|+||....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            47999999999999999999987  58999999998887744

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.58  E-value=3.2e-07  Score=82.30  Aligned_cols=39  Identities=41%  Similarity=0.721  Sum_probs=36.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      -|+|||+|++||+|+..+...|-.|+++|++..+||...
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            599999999999999999999888999999999999654

>PTZ00058 glutathione reductase; Provisional

Probab=98.57  E-value=5.7e-08  Score=98.08  Aligned_cols=42  Identities=33%  Similarity=0.453  Sum_probs=38.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..|||+|||||++|++||..+++.|.+|+|+|++ .+||.|-.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            5699999999999999999999999999999995 79997744

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.57  E-value=4.4e-07  Score=92.94  Aligned_cols=35  Identities=43%  Similarity=0.514  Sum_probs=32.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      |+|||||++||+||..+++.|.+|+|+||...+||
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~   35 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR   35 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence            68999999999999999999999999999886653

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.54  E-value=8.5e-08  Score=95.65  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ++|||+|||||++|++||..+++.|++|+|+|+++.+||.|-
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            459999999999999999999999999999998889999873

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.54  E-value=8.4e-08  Score=95.84  Aligned_cols=44  Identities=30%  Similarity=0.422  Sum_probs=40.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      +..+||+|||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            35699999999999999999999999999999999899998753

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.53  E-value=1.5e-07  Score=92.63  Aligned_cols=54  Identities=43%  Similarity=0.664  Sum_probs=45.4

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCCCcceeeeccCCeee
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDAVGGRVRTDSVDGFLL   97 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~~GG~~~s~~~~g~~~   97 (445)
                      ..++.+||+|||||++||++|+.|.++|.. ++||||++.+||.-+....++...
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~   58 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRL   58 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEE
Confidence            345679999999999999999999999998 999999999999766544444433

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.52  E-value=3.2e-06  Score=75.87  Aligned_cols=79  Identities=18%  Similarity=0.295  Sum_probs=52.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceeee----ccCCeeecccc---cchhccChhHHHhhc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRTD----SVDGFLLDRGF---QIFITAYPEAQKLLD  116 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s~----~~~g~~~d~G~---~~~~~~~~~~~~l~~  116 (445)
                      ..++|++|||||+-||+.|..|.-+  +.+|.|+|+....+=..++-    -+.|..+-.|.   ...........++++
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~  125 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD  125 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence            4579999999999999999999877  89999999998876433322    22233332221   122223345566777


Q ss_pred             ccCCccee
Q 042352          117 YNALNLQK  124 (445)
Q Consensus       117 ~lgl~~~~  124 (445)
                      +.++..+.
T Consensus       126 e~~IpyKk  133 (453)
T KOG2665|consen  126 EKKIPYKK  133 (453)
T ss_pred             hcCCChhh
Confidence            66665543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.51  E-value=1.1e-06  Score=79.34  Aligned_cols=61  Identities=13%  Similarity=0.112  Sum_probs=49.6

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChhHHhhhcCC
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEPEADKLLRQ  311 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~~~~~ll~~  311 (445)
                      +-++|.+.++  |+.+..+-+|.+.+..++++..|.+.+..  .++|+ .+|+|++....+.|..+
T Consensus       260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~-~~VLAsGsffskGLvae  324 (421)
T COG3075         260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRAD-FYVLASGSFFSKGLVAE  324 (421)
T ss_pred             HHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChh-Heeeeccccccccchhh
Confidence            4455555443  99999999999999999888888888764  37898 69999999888888877

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.51  E-value=1.1e-06  Score=87.94  Aligned_cols=38  Identities=37%  Similarity=0.371  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      +||+|||||++|+.||..+++.|.+|+|+|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            69999999999999999999999999999997544443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.48  E-value=1.6e-07  Score=93.19  Aligned_cols=42  Identities=40%  Similarity=0.532  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA-VGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~-~GG~~~   88 (445)
                      +.+||+|||||++|++||..|++.|++|+|+|+++. +||.|-
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            469999999999999999999999999999999864 699764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.47  E-value=1.7e-07  Score=100.07  Aligned_cols=43  Identities=35%  Similarity=0.550  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+..+|+|||||+|||+||++|+++|++|+|||+.+.+||..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            3468999999999999999999999999999999999999875

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.47  E-value=1.9e-07  Score=93.32  Aligned_cols=43  Identities=40%  Similarity=0.502  Sum_probs=39.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.+|||+|||||++|++||..|++.|++|+|+|+.+.+||.|-
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            4579999999999999999999999999999999888999774

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.47  E-value=2.2e-07  Score=98.56  Aligned_cols=43  Identities=40%  Similarity=0.627  Sum_probs=40.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..+||+|||||++||+||++|+++|++|+|+|+.+.+||.++.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            4589999999999999999999999999999999999998854

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.47  E-value=6.7e-07  Score=91.39  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=35.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||..+++.  |.+|+|+||....||.+
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            47999999999999999999987  47999999998877733

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.47  E-value=2.5e-06  Score=77.11  Aligned_cols=43  Identities=40%  Similarity=0.669  Sum_probs=37.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC--CCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS--DAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~--~~~GG~~~   88 (445)
                      +...||||||||++||.||.+|+.+|++|+|+|+.  ..+||++.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence            34689999999999999999999999999999876  44777764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.46  E-value=1.8e-07  Score=92.78  Aligned_cols=43  Identities=33%  Similarity=0.475  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD-AVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~-~~GG~~~s   89 (445)
                      +.|||+|||||++|++||..|+++|++|+|+|+.+ .+||.|..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            46999999999999999999999999999999976 47998754

>PRK06370 mercuric reductase; Validated

Probab=98.46  E-value=1.9e-07  Score=93.19  Aligned_cols=44  Identities=34%  Similarity=0.466  Sum_probs=39.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      |+.++||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   45 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN   45 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence            556799999999999999999999999999999985 67777653

>PRK02106 choline dehydrogenase; Validated

Probab=98.45  E-value=3.3e-06  Score=86.39  Aligned_cols=36  Identities=39%  Similarity=0.491  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~   82 (445)
                      ..+|+||||||.+|+.+|..|++ .|++|+|||+.+.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            45899999999999999999999 7999999999753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.43  E-value=2.6e-07  Score=92.49  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=39.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ...|||+|||||++|++||..|++.|++|+|+|+. .+||.|-.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            45799999999999999999999999999999995 88998854

>PRK12831 putative oxidoreductase; Provisional

Probab=98.42  E-value=3.7e-07  Score=90.75  Aligned_cols=43  Identities=35%  Similarity=0.527  Sum_probs=40.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+.+||+|||||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            4568999999999999999999999999999999999999875

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.42  E-value=3.4e-07  Score=93.22  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=38.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .+.+||+|||||++||+||..|+++|++|+|+|++ ..||.+..
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            45699999999999999999999999999999995 78888764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.41  E-value=2.8e-07  Score=91.51  Aligned_cols=41  Identities=32%  Similarity=0.450  Sum_probs=38.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      +|||+|||||++|++||..+++.|++|+|+|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            58999999999999999999999999999999 589998763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.41  E-value=4.1e-07  Score=89.89  Aligned_cols=43  Identities=30%  Similarity=0.393  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHS--QGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~--~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ...+|+|||||++||+||..|++  .|++|+|||+.+.+||..+.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            45789999999999999999997  69999999999999998874

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.40  E-value=3.3e-07  Score=91.61  Aligned_cols=41  Identities=34%  Similarity=0.498  Sum_probs=38.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .|||+|||||++|++||..|++.|++|+|+|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            38999999999999999999999999999999 889998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.40  E-value=3.6e-07  Score=91.33  Aligned_cols=43  Identities=30%  Similarity=0.371  Sum_probs=38.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      +.++||+|||||++|++||..|++.|++|+|+|+ ..+||.|..
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~   44 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLN   44 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceec
Confidence            3469999999999999999999999999999998 478888754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.40  E-value=3.3e-07  Score=91.01  Aligned_cols=40  Identities=35%  Similarity=0.563  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .|||+|||||++|++||..|++.|++|+|+|+ +.+||.|-
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~   41 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV   41 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence            58999999999999999999999999999999 46899774

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.39  E-value=3.4e-07  Score=91.44  Aligned_cols=41  Identities=44%  Similarity=0.613  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..|||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            569999999999999999999999999999999 78899775

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.39  E-value=5.1e-05  Score=72.46  Aligned_cols=56  Identities=16%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      ..+...|.+.+.  |++++.+++|++|+.+++++++|.+.+| +++|+ .||+|++++.-
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~-~vV~a~G~~~~  194 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQAD-QVVLAAGAWAG  194 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECC-EEEEcCChhhh
Confidence            344555554443  9999999999999987766667888777 78998 79999999864

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.37  E-value=1.2e-06  Score=80.73  Aligned_cols=40  Identities=33%  Similarity=0.534  Sum_probs=35.1

Q ss_pred             ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .........||||||||++|.+-|+.|+|.|.+|+|+||.
T Consensus        38 ~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   38 VEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             hhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            3334445789999999999999999999999999999996

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.37  E-value=3e-07  Score=88.44  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            69999999999999999999999999999998664

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.36  E-value=4.5e-07  Score=90.65  Aligned_cols=42  Identities=36%  Similarity=0.487  Sum_probs=38.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..|||+|||||++|++||..|++.|++|+|+|+.. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            45899999999999999999999999999999977 9998754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.36  E-value=2.1e-06  Score=81.17  Aligned_cols=56  Identities=25%  Similarity=0.371  Sum_probs=46.8

Q ss_pred             ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      ..+++.+.+.++  |++|+++++|..|+..++.+..|.+++|+++.++ +||+|.+-..
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~-~vvlA~Grsg  230 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEAD-YVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecC-EEEEccCcch
Confidence            345566666554  9999999999999999887788999999999998 7999998753

>PLN02985 squalene monooxygenase

Probab=98.36  E-value=6.8e-07  Score=89.78  Aligned_cols=42  Identities=29%  Similarity=0.436  Sum_probs=36.4

Q ss_pred             ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+......+||+|||||++|+++|+.|+++|++|+|+||...
T Consensus        36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            334455678999999999999999999999999999999753

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.36  E-value=5.6e-07  Score=95.07  Aligned_cols=44  Identities=43%  Similarity=0.669  Sum_probs=40.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ....+|+|||||++||+||++|+++|++|+|+|+.+.+||.++.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            45689999999999999999999999999999999999998764

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=98.35  E-value=6.2e-06  Score=78.55  Aligned_cols=115  Identities=18%  Similarity=0.118  Sum_probs=83.8

Q ss_pred             CCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeC
Q 042352          187 EVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLN  266 (445)
Q Consensus       187 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n  266 (445)
                      ..+..+||++.|+++.+++.++.+.++..|+.+. ++.+ +.+.+.-.-..++.+.++||..+|++.|.+.- ++++ +|
T Consensus        69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a-~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S-~A~v-l~  144 (368)
T PF07156_consen   69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHA-FAGLVSLAGATGGLWSVEGGNWQIFEGLLEAS-GANV-LN  144 (368)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhh-hhhheeeeeccCCceEecCCHHHHHHHHHHHc-cCcE-ec
Confidence            4688999999999999999999999999999863 3322 22221111134678899999999999999986 8999 99


Q ss_pred             ceeeEE-EecCCCc--CeEEeCC--CceEEeccEEEEcCChhHH
Q 042352          267 TRVLSI-DFDEQNM--PNVRLAN--GETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       267 ~~V~~I-~~~~~~~--~~V~~~~--g~~i~a~~~VV~a~~~~~~  305 (445)
                      ++|++| ...+++.  +.|...+  +......|.||+|+|....
T Consensus       145 ~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~  188 (368)
T PF07156_consen  145 TTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS  188 (368)
T ss_pred             ceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence            999999 4444432  3555543  2233444589999999643

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=1.4e-05  Score=74.21  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=45.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD   93 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~   93 (445)
                      .+..+||||||.|+.-...|...++.|.+|+-+|.+++.||...++..+
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            4567999999999999999999999999999999999999999988654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.35  E-value=3.9e-07  Score=86.24  Aligned_cols=45  Identities=38%  Similarity=0.590  Sum_probs=41.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD   90 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~   90 (445)
                      +...+++|||||++|++||..|++.|++|.++|+++.+||+....
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~  166 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL  166 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence            346789999999999999999999999999999999999997653

>TIGR01810 betA choline dehydrogenase

Probab=98.34  E-value=2.5e-06  Score=86.69  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=38.0

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCC-c--e-EEeccEEEEcCChhHHhhhc
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANG-E--T-LKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g-~--~-i~a~~~VV~a~~~~~~~~ll  309 (445)
                      +.+|+.++.|++|..+++++++|++.++ +  + +.++ .||+|++...+.+||
T Consensus       208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak-~VIlaAGai~SP~LL  260 (532)
T TIGR01810       208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANK-EVILSAGAINSPQLL  260 (532)
T ss_pred             CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEee-eEEEccCCCCCHHHH
Confidence            7999999999999998777788887543 2  2 4566 799999986655544

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.1e-06  Score=81.62  Aligned_cols=44  Identities=34%  Similarity=0.481  Sum_probs=36.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD   90 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~   90 (445)
                      +.+||+|||||++||+||.+++++|.+++|++....+||.....
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~   45 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT   45 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc
Confidence            56899999999999999999999999955555557777776654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.31  E-value=7.3e-07  Score=87.10  Aligned_cols=37  Identities=41%  Similarity=0.443  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +||+|||||++|++||+.|+++|++|+|+|++...+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~   37 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK   37 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            5899999999999999999999999999999865543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.30  E-value=1.1e-06  Score=86.88  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++.++ |+++..++++ +..|++++|++++|+ .||=|++...
T Consensus       168 Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad-~~IDASG~~s  211 (454)
T PF04820_consen  168 GVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEAD-FFIDASGRRS  211 (454)
T ss_dssp             T-EEEET--EEEEEE-TTSEEEEEEETTSEEEEES-EEEE-SGGG-
T ss_pred             CCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEe-EEEECCCccc
Confidence            99998875 8888777655 568999999999998 6998888764

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.29  E-value=1e-06  Score=88.92  Aligned_cols=40  Identities=35%  Similarity=0.574  Sum_probs=37.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+||||| +||+||+.++++|.+|+||||....||.+
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            47899999999 99999999999999999999999888854

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.29  E-value=7.4e-07  Score=86.96  Aligned_cols=32  Identities=41%  Similarity=0.515  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      |||+|||||++|++||+.|++.|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            69999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.28  E-value=1.2e-06  Score=91.24  Aligned_cols=43  Identities=35%  Similarity=0.543  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ...+|+|||||++||+||+.|++.|++|+|+|+.+.+||....
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            5679999999999999999999999999999999999998753

>PRK14694 putative mercuric reductase; Provisional

Probab=98.27  E-value=1.1e-06  Score=87.99  Aligned_cols=42  Identities=29%  Similarity=0.486  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..+||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            5799999999999999999999999999999985 78997753

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.27  E-value=1.1e-06  Score=94.94  Aligned_cols=42  Identities=38%  Similarity=0.548  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...||+|||||++||+||++|+++|++|+|+|+.+.+||..+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            467999999999999999999999999999999999999775

>TIGR02053 MerA mercuric reductase

Probab=98.27  E-value=9.5e-07  Score=88.29  Aligned_cols=39  Identities=28%  Similarity=0.509  Sum_probs=36.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      |||+|||||++|++||..|++.|++|+|+|+.. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            699999999999999999999999999999965 788764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.27  E-value=1.4e-06  Score=86.54  Aligned_cols=43  Identities=42%  Similarity=0.608  Sum_probs=39.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            3568999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.26  E-value=1e-06  Score=88.17  Aligned_cols=43  Identities=37%  Similarity=0.509  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec------CCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA------SDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~------~~~~GG~~~s   89 (445)
                      ..||++|||||++|++||.+|++.|.+|+|+|+      ...+||.|..
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n   51 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN   51 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence            469999999999999999999999999999998      3677887753

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.26  E-value=2.2e-06  Score=88.41  Aligned_cols=60  Identities=18%  Similarity=0.256  Sum_probs=47.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCC--CcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDAV--GGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN  121 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~  121 (445)
                      |++++||+|||||++||++|..|++ .|.+|+|||+.+..  .|++.                 +..+...++++.+|+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~-----------------gl~prtleiL~~lGl~   91 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD-----------------GIACRTMEMFQAFGFA   91 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee-----------------EEChHHHHHHHhccch
Confidence            5568999999999999999999999 59999999987542  12221                 2356788888888863

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=98.25  E-value=6e-06  Score=75.84  Aligned_cols=68  Identities=26%  Similarity=0.395  Sum_probs=49.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDY  117 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~  117 (445)
                      ..+-|||+|++||++|.+|.+.    |.++.|+|.-+..||..-...  +.|+... |++.+-..+..+++|+..
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~R-GGRemEnhfEc~WDlfrs   96 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVR-GGREMENHFECLWDLFRS   96 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeec-CcHHHHHHHHHHHHHHhc
Confidence            5688999999999999999986    669999999999999876543  3466553 443333334455566544

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.25  E-value=1.7e-06  Score=84.43  Aligned_cols=44  Identities=23%  Similarity=0.240  Sum_probs=38.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCCCCCcceeee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASDAVGGRVRTD   90 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~~~GG~~~s~   90 (445)
                      ...+|+|||||++||+||.+|. +.|++|+|+|+.+.+||..+.-
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            3468999999999999999765 5699999999999999999863

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.24  E-value=1.2e-06  Score=87.92  Aligned_cols=41  Identities=29%  Similarity=0.533  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--------CCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--------AVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~   88 (445)
                      .|||+|||||++|++||..|++.|++|+|+|+..        .+||.|-
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~   53 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV   53 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence            5899999999999999999999999999999732        4899874

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.24  E-value=9.9e-07  Score=88.57  Aligned_cols=41  Identities=49%  Similarity=0.654  Sum_probs=35.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .+|+|||||++||+||..|.+.|++|+++||++.+||.-+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            57999999999999999999999999999999999998753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK14727 putative mercuric reductase; Provisional

Probab=98.22  E-value=1.5e-06  Score=86.98  Aligned_cols=43  Identities=30%  Similarity=0.503  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .++|++|||||++|+++|..|++.|.+|+|+|+.+.+||.|..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            4689999999999999999999999999999998899998854

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.21  E-value=1.7e-06  Score=91.43  Aligned_cols=43  Identities=35%  Similarity=0.577  Sum_probs=39.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            3568999999999999999999999999999999999999875

>PLN02546 glutathione reductase

Probab=98.21  E-value=3.5e-06  Score=85.28  Aligned_cols=43  Identities=26%  Similarity=0.296  Sum_probs=37.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec---------CCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA---------SDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~---------~~~~GG~~~s   89 (445)
                      .+|||+|||||.+|+.||..+++.|++|+|+|+         ...+||-|-.
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n  129 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL  129 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence            369999999999999999999999999999996         2567886654

>PRK13748 putative mercuric reductase; Provisional

Probab=98.21  E-value=1.4e-06  Score=89.25  Aligned_cols=41  Identities=39%  Similarity=0.527  Sum_probs=38.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++|++||..|++.|++|+|+|++ .+||.|-
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            3699999999999999999999999999999997 8999874

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.20  E-value=1.8e-06  Score=80.21  Aligned_cols=43  Identities=35%  Similarity=0.557  Sum_probs=38.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..+||+|||||++||+||..|.+.      ..+|+|+|+...+||++-|
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence            469999999999999999999773      4699999999999998865

>PRK10262 thioredoxin reductase; Provisional

Probab=98.20  E-value=2.1e-06  Score=81.51  Aligned_cols=43  Identities=26%  Similarity=0.463  Sum_probs=37.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .+.+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            35689999999999999999999999999999964 67887654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.19  E-value=2.5e-06  Score=85.20  Aligned_cols=42  Identities=40%  Similarity=0.689  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999764

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.18  E-value=5.1e-07  Score=76.17  Aligned_cols=67  Identities=28%  Similarity=0.385  Sum_probs=51.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceeeeccCCeeecccccchhcc--ChhHHHhhcccCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA--YPEAQKLLDYNALNLQ  123 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~  123 (445)
                      ..||+|||||-+||+|||+.+++  ..+|.|+|++-.+||-++          +|++.|...  .....-+++++|+.++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~EigvpYe  145 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVPYE  145 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCCcc
Confidence            57999999999999999999976  679999999999998665          566665431  2233345788887665


Q ss_pred             e
Q 042352          124 K  124 (445)
Q Consensus       124 ~  124 (445)
                      .
T Consensus       146 d  146 (328)
T KOG2960|consen  146 D  146 (328)
T ss_pred             c
Confidence            3

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.17  E-value=2.4e-06  Score=83.58  Aligned_cols=45  Identities=36%  Similarity=0.492  Sum_probs=41.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD   90 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~   90 (445)
                      +.+||++|||||++|.+||..+++.|.+|+++|+...+||-|--+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            467999999999999999999999999999999988999988653

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.17  E-value=2.2e-06  Score=87.80  Aligned_cols=40  Identities=33%  Similarity=0.458  Sum_probs=36.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      .+.||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4569999999999999999999999999999999887663

>PTZ00367 squalene epoxidase; Provisional

Probab=98.17  E-value=2e-06  Score=86.96  Aligned_cols=36  Identities=33%  Similarity=0.495  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +.++||+|||||++|+++|+.|+++|++|+|+||+.
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            356899999999999999999999999999999975

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.15  E-value=3e-06  Score=87.87  Aligned_cols=42  Identities=38%  Similarity=0.642  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..++|+|||||++||+||+.|++.|++|+|+|+++.+||...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.15  E-value=3.3e-06  Score=87.46  Aligned_cols=42  Identities=36%  Similarity=0.581  Sum_probs=39.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            468999999999999999999999999999999999999865

>PLN02507 glutathione reductase

Probab=98.15  E-value=2.6e-06  Score=85.58  Aligned_cols=44  Identities=30%  Similarity=0.317  Sum_probs=38.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec---------CCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA---------SDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~---------~~~~GG~~~s   89 (445)
                      +-+||++|||||++|+.||..+++.|.+|+|+|+         .+.+||.|-.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence            3469999999999999999999999999999996         3678998854

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.14  E-value=3.7e-06  Score=83.81  Aligned_cols=42  Identities=40%  Similarity=0.592  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+|+|||||++||+||+.|++.|++|+|+|+.+.+||..+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            467999999999999999999999999999999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.13  E-value=3.6e-06  Score=83.92  Aligned_cols=43  Identities=47%  Similarity=0.701  Sum_probs=39.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...++|+|||||++||++|+.|+++|++|+|+|+++.+||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            3457999999999999999999999999999999999998764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.13  E-value=2.8e-06  Score=88.86  Aligned_cols=41  Identities=17%  Similarity=0.209  Sum_probs=36.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      .+..+|+|||||++||+||++|+++|++|+|+|+.+..|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            45689999999999999999999999999999998766554

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.12  E-value=3.1e-06  Score=91.72  Aligned_cols=43  Identities=35%  Similarity=0.535  Sum_probs=40.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            4689999999999999999999999999999999999998864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.11  E-value=3.7e-06  Score=82.36  Aligned_cols=45  Identities=38%  Similarity=0.471  Sum_probs=41.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .....+|+|||||++||+||+.|++.|++|+|+|+.+.+||++..
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            334589999999999999999999999999999999999998864

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.10  E-value=4e-06  Score=80.54  Aligned_cols=36  Identities=44%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .||+|||||++|+.||+.|+++|++|+|+|+.+...
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            589999999999999999999999999999876654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.10  E-value=1.9e-05  Score=75.54  Aligned_cols=36  Identities=33%  Similarity=0.603  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~   82 (445)
                      .+.+|+|||||.+||.+|..|.++-  .+|+++|+++.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            3568999999999999999999974  89999999876

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.10  E-value=3.4e-06  Score=81.39  Aligned_cols=37  Identities=35%  Similarity=0.574  Sum_probs=34.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcc
Q 042352           50 RVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGR   86 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~   86 (445)
                      ||+|||||++||++|+.|++.  |++|+|+|+.+.+||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999987  9999999999877763

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.09  E-value=3.8e-06  Score=86.73  Aligned_cols=44  Identities=43%  Similarity=0.636  Sum_probs=40.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ...++|+|||+|++||+||-.|.|.|+.|+|+||.+++||....
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            34689999999999999999999999999999999999998763

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.08  E-value=4.2e-06  Score=78.38  Aligned_cols=36  Identities=36%  Similarity=0.702  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +.+|+|||||++||++|..|.++|.+|+|+|+...+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            458999999999999999999999999999987554

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.07  E-value=4.3e-06  Score=83.52  Aligned_cols=43  Identities=26%  Similarity=0.434  Sum_probs=38.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC--------CCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEAS--------DAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~--------~~~GG~~~s   89 (445)
                      .+|||+|||||++|..||..+++. |.+|+|+|+.        +.+||-|-.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln   53 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN   53 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence            469999999999999999999997 9999999984        578997754

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.05  E-value=9.6e-06  Score=83.34  Aligned_cols=42  Identities=29%  Similarity=0.509  Sum_probs=38.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcceee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGRVRT   89 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s   89 (445)
                      +|||+|||||.+|..||..+++.|.+|+|+|+. +.+||-|-.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            689999999999999999999999999999974 478997754

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.04  E-value=2.6e-05  Score=74.82  Aligned_cols=54  Identities=20%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             cHHHHHHhcC---CCCcEEeCceeeEEEecCCCcC-eEEeCCC----ceEEeccEEEEcCChh
Q 042352          249 QIPNQIASKL---PFESILLNTRVLSIDFDEQNMP-NVRLANG----ETLKSEIGVILAVEEP  303 (445)
Q Consensus       249 ~l~~~l~~~l---~g~~i~~n~~V~~I~~~~~~~~-~V~~~~g----~~i~a~~~VV~a~~~~  303 (445)
                      .|.++|.+.+   ++++|+-++.+.+|..+++..+ +|.+.+.    .++.|+ .||+|++--
T Consensus       134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~  195 (518)
T COG0029         134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAK-AVVLATGGL  195 (518)
T ss_pred             HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecC-eEEEecCCC
Confidence            3455666555   2899999999999998887444 7877543    357888 799999873

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.01  E-value=8.3e-06  Score=81.66  Aligned_cols=42  Identities=38%  Similarity=0.628  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+|+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            347999999999999999999999999999999999999775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.00  E-value=9.7e-06  Score=82.97  Aligned_cols=43  Identities=42%  Similarity=0.669  Sum_probs=39.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ....+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            4567999999999999999999999999999999999999764

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.00  E-value=6.3e-05  Score=72.28  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~GG   85 (445)
                      +++|+|||+|++|++.|.+|.+.   ...|.|+|+....|+
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~   41 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ   41 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence            36899999999999999999996   223999999999885

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.99  E-value=7.4e-06  Score=79.21  Aligned_cols=36  Identities=42%  Similarity=0.487  Sum_probs=33.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ||+|||||++|+.||+.|+++|++|+|+|+++..|-
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            799999999999999999999999999998777554

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=1.1e-05  Score=78.21  Aligned_cols=35  Identities=37%  Similarity=0.477  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +..|||||||||.+|+-||+..++.|.+++++--+
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            34599999999999999999999999999998754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.95  E-value=7.3e-05  Score=79.44  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             CCcEEeCceeeEEEecC-CCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDE-QNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~-~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++|++++.|++|..++ +....|.+.+|+++.+| .||++++...
T Consensus       201 GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D-~Vv~A~G~rP  245 (847)
T PRK14989        201 GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD-FIVFSTGIRP  245 (847)
T ss_pred             CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC-EEEECCCccc
Confidence            99999999999998654 23456888899999998 7999998753

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.94  E-value=9.8e-06  Score=71.19  Aligned_cols=33  Identities=39%  Similarity=0.643  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ||+|||||++||+||..|++.|++|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.94  E-value=1.6e-05  Score=76.38  Aligned_cols=42  Identities=36%  Similarity=0.447  Sum_probs=38.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+|+|||||++||++|..|++.|++|+++|+.+.+||...
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            346899999999999999999999999999999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.91  E-value=2e-05  Score=57.85  Aligned_cols=35  Identities=40%  Similarity=0.644  Sum_probs=32.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      +|+|||||..|+-.|..|++.|.+|+++|+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            48999999999999999999999999999987765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.91  E-value=1.2e-05  Score=80.41  Aligned_cols=42  Identities=36%  Similarity=0.536  Sum_probs=36.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--------CCCcceee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--------AVGGRVRT   89 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~s   89 (445)
                      .||++|||||++|+.||..+++.|.+|+++|+..        .+||.|-.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            4899999999999999999999999999999731        57887643

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.90  E-value=4.8e-05  Score=73.38  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=38.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||.+|..||.-.+-+|.+|.++|+++...|-.+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence            459999999999999999999999999999999999777443

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.90  E-value=0.00017  Score=71.76  Aligned_cols=40  Identities=35%  Similarity=0.491  Sum_probs=35.1

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAV   83 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~   83 (445)
                      +....||.||||||-+|...|..|++. ..+|++||+....
T Consensus        53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            355689999999999999999999998 6799999996554

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.88  E-value=1.7e-05  Score=72.00  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~   83 (445)
                      .++||+|||||..|+|+|++|.++    |.+|+|+|+++..
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            479999999999999999999885    7999999998764

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.87  E-value=1.7e-05  Score=79.97  Aligned_cols=42  Identities=33%  Similarity=0.394  Sum_probs=38.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..++||+|||||.+||.||..++++|.+|+|+||....+|.+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t   45 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT   45 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence            457899999999999999999999999999999998888644

>PRK13984 putative oxidoreductase; Provisional

Probab=97.86  E-value=2.3e-05  Score=80.99  Aligned_cols=43  Identities=33%  Similarity=0.549  Sum_probs=39.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+..+|+|||||++|++||..|++.|++|+|+|+.+.+||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            4568899999999999999999999999999999999999765

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.84  E-value=2.1e-05  Score=79.88  Aligned_cols=39  Identities=33%  Similarity=0.522  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||+|++||+||..+++. .+|+|+||....||.
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            458999999999999999999987 899999999887774

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.82  E-value=2.1e-05  Score=78.50  Aligned_cols=38  Identities=32%  Similarity=0.613  Sum_probs=34.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +|+|||||++|++||..|++.|.+|+|+|++ ..||.|-
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~   39 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL   39 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence            7999999999999999999999999999996 5777664

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.82  E-value=2.3e-05  Score=78.27  Aligned_cols=40  Identities=28%  Similarity=0.499  Sum_probs=36.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .|++|||||.+|+.||..|++.|.+|+|+|++ .+||.|-.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~   41 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL   41 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence            48999999999999999999999999999986 58997754

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.76  E-value=1.1e-05  Score=71.57  Aligned_cols=43  Identities=19%  Similarity=0.503  Sum_probs=37.6

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCC------CCEEEEecCCCCCcc
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQG------RPFVLLEASDAVGGR   86 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G------~~V~vlE~~~~~GG~   86 (445)
                      ++.+..+|+|||||+.|.++||+|++++      ..|+|+|.....||.
T Consensus         6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga   54 (380)
T KOG2852|consen    6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA   54 (380)
T ss_pred             ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence            4445689999999999999999999987      699999998888763

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.74  E-value=0.00011  Score=69.80  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~   83 (445)
                      .+|+|+||.|+++|+-|..|.+.+ .+++.||+++..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            479999999999999999999986 899999987653

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.73  E-value=4.7e-05  Score=70.35  Aligned_cols=42  Identities=29%  Similarity=0.362  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s   89 (445)
                      .+.|+|||+|++|+.+|+.|.++  +.+|+|+|+.+.++|..+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence            45899999999999999999995  7899999999999998876

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.73  E-value=3.3e-05  Score=81.72  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~   82 (445)
                      +|+|||||++||++|..|++.  |++|+|+|+++.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            799999999999999999998  899999999876

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.72  E-value=0.00021  Score=75.85  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++|++++.|++|..++ ....|++.||+++.+| .||++++..
T Consensus       196 GV~v~~~~~v~~i~~~~-~~~~v~~~dG~~i~~D-~Vi~a~G~~  237 (785)
T TIGR02374       196 GLTFLLEKDTVEIVGAT-KADRIRFKDGSSLEAD-LIVMAAGIR  237 (785)
T ss_pred             CCEEEeCCceEEEEcCC-ceEEEEECCCCEEEcC-EEEECCCCC
Confidence            99999999999997653 4467888999999998 799999874

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.72  E-value=3.8e-05  Score=78.57  Aligned_cols=33  Identities=27%  Similarity=0.544  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHH----HCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLH----SQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~----~~G~~V~vlE~~~~   82 (445)
                      ||+|||||++||+||..++    ++|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            8999999999999999998    67999999999876

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.66  E-value=5.9e-05  Score=69.79  Aligned_cols=43  Identities=28%  Similarity=0.408  Sum_probs=40.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .++|++|||+|++|-.||...++.|++.+.+|++..+||-|--
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn   80 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN   80 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence            5799999999999999999999999999999999999997753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.59  E-value=0.00068  Score=66.33  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  178 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT  178 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            46799999999999999999999999999998654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.57  E-value=7.3e-05  Score=75.75  Aligned_cols=37  Identities=30%  Similarity=0.528  Sum_probs=34.0

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+..++|+||||+|.+|.+.|..|++.|++|+|||+.
T Consensus         3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            3456799999999999999999999889999999986

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.56  E-value=0.0062  Score=61.82  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=36.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeC---CCc--eEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLA---NGE--TLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~---~g~--~i~a~~~VV~a~~~~~  304 (445)
                      |++|+.+++|++|+.+++++++|++.   +|+  +++|+ .||+|+++|.
T Consensus       142 Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~wa  190 (516)
T TIGR03377       142 GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIWA  190 (516)
T ss_pred             CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcch
Confidence            99999999999999887766666653   343  68998 7999999986

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.55  E-value=7.8e-05  Score=80.33  Aligned_cols=36  Identities=36%  Similarity=0.467  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+||+|||||.+||+||..+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            458999999999999999999999999999999875

>TIGR03452 mycothione_red mycothione reductase

Probab=97.54  E-value=9e-05  Score=73.71  Aligned_cols=43  Identities=19%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++++++|++|+.++++ +.|++.+|+++.+| .|+++++...
T Consensus       223 gI~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D-~vl~a~G~~p  265 (452)
T TIGR03452       223 KWDIRLGRNVTAVEQDGDG-VTLTLDDGSTVTAD-VLLVATGRVP  265 (452)
T ss_pred             CCEEEeCCEEEEEEEcCCe-EEEEEcCCCEEEcC-EEEEeeccCc
Confidence            8899999999999876544 56777788889998 7999998654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=97.53  E-value=9e-05  Score=73.67  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=35.8

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      +++++++++|++|+.++++ +.|++.+|+++.+| .||+|++...-
T Consensus       220 ~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~~D-~vl~a~G~~pn  263 (451)
T PRK07846        220 RWDVRLGRNVVGVSQDGSG-VTLRLDDGSTVEAD-VLLVATGRVPN  263 (451)
T ss_pred             CeEEEeCCEEEEEEEcCCE-EEEEECCCcEeecC-EEEEEECCccC
Confidence            8899999999999876543 56777788889998 79999887543

>PLN02785 Protein HOTHEAD

Probab=97.50  E-value=0.00014  Score=74.26  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...||+||||||.+|+..|..|++ +.+|+|||+..
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            446999999999999999999999 69999999965

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.50  E-value=0.0025  Score=62.73  Aligned_cols=42  Identities=31%  Similarity=0.495  Sum_probs=36.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~  303 (445)
                      |++++++++|++++..+++ +.|++++|+  +++++ .|++|++-.
T Consensus       228 gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad-~vLvAiGR~  271 (454)
T COG1249         228 GVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEAD-AVLVAIGRK  271 (454)
T ss_pred             CeEEEccceEEEEEecCCe-EEEEEecCCCCEEEee-EEEEccCCc
Confidence            8899999999999998876 888888886  68898 699999874

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.46  E-value=0.0015  Score=63.50  Aligned_cols=43  Identities=16%  Similarity=0.265  Sum_probs=35.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++++++|++|..+++. +.|++.+|+++.+| .||+|++...
T Consensus       197 gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D-~vI~a~G~~p  239 (377)
T PRK04965        197 GVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVD-AVIAAAGLRP  239 (377)
T ss_pred             CCEEEECCeEEEEEccCCE-EEEEEcCCcEEECC-EEEECcCCCc
Confidence            8899999999999876543 56788899899998 7999988753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.42  E-value=0.0014  Score=65.33  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+++|||||.+|+-.|..|++.|.+|+++|+.++
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  200 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER  200 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            5899999999999999999999999999998644

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.39  E-value=0.0022  Score=64.12  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++++++|++|+.++++ +.+++.+|+++.++ .||+|++...
T Consensus       230 gI~v~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D-~vi~a~G~~p  272 (461)
T PRK05249        230 GVTIRHNEEVEKVEGGDDG-VIVHLKSGKKIKAD-CLLYANGRTG  272 (461)
T ss_pred             CCEEEECCEEEEEEEeCCe-EEEEECCCCEEEeC-EEEEeecCCc
Confidence            8899999999999876544 55677788889998 7999998754

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.38  E-value=0.0011  Score=63.46  Aligned_cols=62  Identities=13%  Similarity=0.163  Sum_probs=46.3

Q ss_pred             Cccc-cCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCC-ceEEeccEEEEcCChhHH
Q 042352          240 NTIP-ANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANG-ETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       240 ~~~~-~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g-~~i~a~~~VV~a~~~~~~  305 (445)
                      ..|| ..-.+.++++|.+.+.  ||+|+++++|++|  +++ ...|.+.++ .+++|+ .||+|++-...
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-~~~v~~~~~~~~~~a~-~vIlAtGG~s~  142 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-TLRFETPDGQSTIEAD-AVVLALGGASW  142 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-cEEEEECCCceEEecC-EEEEcCCCccc
Confidence            4444 4557788999988775  9999999999999  222 367777543 468998 69999997543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00028  Score=64.29  Aligned_cols=58  Identities=24%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcceeeeccCCeeeccc
Q 042352           41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGRVRTDSVDGFLLDRG  100 (445)
Q Consensus        41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s~~~~g~~~d~G  100 (445)
                      .......+||.||||||-+||+||-+.+..|.+|.++|-- +.+-|  .++-.+|..++.|
T Consensus        12 ~~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~G--tsWGlGGTCvNVG   70 (503)
T KOG4716|consen   12 ARLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQG--TSWGLGGTCVNVG   70 (503)
T ss_pred             hhhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCC--CccccCceeeecc
Confidence            3344456899999999999999999999999999999953 22322  4455556555555

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.36  E-value=0.0018  Score=64.78  Aligned_cols=35  Identities=26%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||||.+|+.+|..|++.|.+|+++|+.+.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  204 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR  204 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence            36899999999999999999999999999998653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.35  E-value=0.00026  Score=69.23  Aligned_cols=42  Identities=26%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++++++|++|+. + +.+.|++.+|+++.+| .||++++...
T Consensus       200 GV~i~~~~~V~~i~~-~-~~~~v~l~~g~~i~aD-~Vv~a~G~~p  241 (396)
T PRK09754        200 GVRILLNNAIEHVVD-G-EKVELTLQSGETLQAD-VVIYGIGISA  241 (396)
T ss_pred             CCEEEeCCeeEEEEc-C-CEEEEEECCCCEEECC-EEEECCCCCh
Confidence            999999999999976 3 3356788899889998 7999998754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.32  E-value=0.00028  Score=69.99  Aligned_cols=36  Identities=19%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G   84 (445)
                      .+|+|||||++|++||..|++.  +++|+|+|+++..+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            3799999999999999999987  67999999987654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.32  E-value=0.0024  Score=63.92  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  206 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR  206 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            5899999999999999999999999999998654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.28  E-value=0.00029  Score=70.10  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVG   84 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~G   84 (445)
                      +|+|||||++||+||..|++.+  .+|+|+|+++..+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~   38 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS   38 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence            6999999999999999999975  5899999998764

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.23  E-value=0.00047  Score=63.17  Aligned_cols=47  Identities=30%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD   90 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~   90 (445)
                      .....+|..|||||-+|+.+|...++.|.+|.|+|..-.+||-|--.
T Consensus        16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~   62 (478)
T KOG0405|consen   16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV   62 (478)
T ss_pred             ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence            34458999999999999999999999999999999988999988653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.14  E-value=0.004  Score=62.29  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=34.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++++++|++|+.++++ +.|.+.+|+++.+| .||++++...
T Consensus       232 gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D-~vl~a~G~~p  274 (466)
T PRK07845        232 GMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGS-HALMAVGSVP  274 (466)
T ss_pred             CcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEec-EEEEeecCCc
Confidence            8899999999999876554 55777788889998 7999977643

>PLN02507 glutathione reductase

Probab=97.14  E-value=0.0042  Score=62.59  Aligned_cols=42  Identities=17%  Similarity=0.146  Sum_probs=34.6

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++|+++++|++|+.++++ +.|.+.+|+++.+| .|+++++..
T Consensus       258 GI~i~~~~~V~~i~~~~~~-~~v~~~~g~~i~~D-~vl~a~G~~  299 (499)
T PLN02507        258 GINLHPRTNLTQLTKTEGG-IKVITDHGEEFVAD-VVLFATGRA  299 (499)
T ss_pred             CCEEEeCCEEEEEEEeCCe-EEEEECCCcEEEcC-EEEEeecCC
Confidence            8899999999999876544 56777788889998 799998764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.12  E-value=0.00053  Score=67.68  Aligned_cols=37  Identities=22%  Similarity=0.378  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +.+.+|+|||||.+|+++|..|.+.+++|+|+|+++.
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            3567999999999999999999877899999998765

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.12  E-value=0.0045  Score=62.07  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=35.1

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |+++++++.|++|..++++...|++.+|+++.++ .||++++..
T Consensus       245 GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D-~vl~a~G~~  287 (486)
T TIGR01423       245 GINIMTNENPAKVTLNADGSKHVTFESGKTLDVD-VVMMAIGRV  287 (486)
T ss_pred             CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcC-EEEEeeCCC
Confidence            8899999999999876555456777788889998 699988864

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.10  E-value=0.0049  Score=61.32  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++++++++|++|..++++ +.|++.+|+++.+| .||+|++..
T Consensus       221 gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D-~viva~G~~  262 (446)
T TIGR01424       221 GIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVAD-VVLFATGRS  262 (446)
T ss_pred             CCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecC-EEEEeeCCC
Confidence            8899999999999876544 56777788889998 699998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.98  E-value=0.00089  Score=65.78  Aligned_cols=60  Identities=33%  Similarity=0.527  Sum_probs=47.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNL  122 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~  122 (445)
                      ..+++|||+|..||.+|..|+++|++|+++|+.+++||+...               ......+.+++++.|+++
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~---------------~~~~~~~~~~l~~~gi~~  195 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD---------------PEVAEELAELLEKYGVEL  195 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------HHHHHHHHHHHHHCCcEE
Confidence            479999999999999999999999999999999999986531               122345666666666544

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.0013  Score=59.84  Aligned_cols=36  Identities=42%  Similarity=0.621  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..|.|||||++|.-|||.++++|..|.++|=.+.-+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            469999999999999999999999999999665543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.68  E-value=0.0026  Score=61.82  Aligned_cols=34  Identities=24%  Similarity=0.513  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~   82 (445)
                      .||+|||||++|+++|..|.+.  ..+|+|+++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            5899999999999999999886  458999998763

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.57  E-value=0.022  Score=53.91  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=33.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDA   82 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~   82 (445)
                      |++.+|+|.||-|+.-|+-|..|...+ .+++.+||.+.
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~   40 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD   40 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence            456799999999999999999999974 78999999754

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0048  Score=53.19  Aligned_cols=44  Identities=30%  Similarity=0.382  Sum_probs=37.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC----CCCCcceeee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS----DAVGGRVRTD   90 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~----~~~GG~~~s~   90 (445)
                      ..-+|+|||+|+++-+||.+++++..+.+++|.-    -.+||+..+.
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence            3458999999999999999999999999999942    3458888764

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.49  E-value=0.0027  Score=61.42  Aligned_cols=39  Identities=18%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++++++|++|+.+     .|.+.+|+++.+| .||++++...
T Consensus       205 gV~v~~~~~v~~i~~~-----~v~~~~g~~i~~D-~vi~a~G~~p  243 (364)
T TIGR03169       205 GIEVHEGAPVTRGPDG-----ALILADGRTLPAD-AILWATGARA  243 (364)
T ss_pred             CCEEEeCCeeEEEcCC-----eEEeCCCCEEecC-EEEEccCCCh
Confidence            9999999999998532     4777888889998 7999998653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.48  E-value=0.0032  Score=52.83  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|+|||||-.|.+.|..|+++|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0017  Score=59.67  Aligned_cols=40  Identities=35%  Similarity=0.450  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..|||.|||+|++|-+||.+.+++|.+.-++-  .+.||+.-
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvl  249 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVL  249 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeec
Confidence            46999999999999999999999999876652  56788663

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.41  E-value=0.0051  Score=61.89  Aligned_cols=35  Identities=34%  Similarity=0.529  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+++|..|+++|++|+++|+.+.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            45799999999999999999999999999997653

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.37  E-value=0.0057  Score=57.67  Aligned_cols=36  Identities=39%  Similarity=0.608  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~   81 (445)
                      ...+||+|||||+.|++-|..|...    ..+|+++|..+
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            3479999999999999999999875    56999999873

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.33  E-value=0.005  Score=52.87  Aligned_cols=33  Identities=33%  Similarity=0.445  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .|+|||||..|...|..++..|++|+++|.+..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            489999999999999999999999999998533

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.0032  Score=56.67  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-------CCEEEEec
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-------RPFVLLEA   79 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-------~~V~vlE~   79 (445)
                      ...+|+|||||+.||++|..+.+.+       .+|+|++-
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D   41 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD   41 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence            3568999999999999998888843       58899863

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.26  E-value=0.076  Score=50.62  Aligned_cols=42  Identities=36%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCC---C--ceEEeccEEEEcCCh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLAN---G--ETLKSEIGVILAVEE  302 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~---g--~~i~a~~~VV~a~~~  302 (445)
                      ..+|+.+++|++++..+++.+.+++.+   |  .++.+| .||+||+.
T Consensus       293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D-~VilATGy  339 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVD-AVILATGY  339 (341)
T ss_dssp             -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEES-EEEE---E
T ss_pred             CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecC-EEEEcCCc
Confidence            468999999999999986557777765   2  358888 79999975

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.16  E-value=0.0057  Score=61.14  Aligned_cols=34  Identities=38%  Similarity=0.502  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +|.|||+|.+|+++|..|.++|++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.10  E-value=0.0082  Score=57.58  Aligned_cols=35  Identities=34%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+||||||||.+|.-||...++-|.+.+++-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            35699999999999999999999999998888654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.92  E-value=0.012  Score=58.45  Aligned_cols=37  Identities=27%  Similarity=0.415  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  193 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL  193 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            3579999999999999999999999999999987764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.88  E-value=0.013  Score=54.74  Aligned_cols=36  Identities=31%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ++..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus         2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            344679999999999999999999999999999763

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.87  E-value=0.013  Score=55.00  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...|+|||+|..|..-|..++..|++|+++|..+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3579999999999999999999999999999764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.84  E-value=0.0088  Score=51.51  Aligned_cols=33  Identities=27%  Similarity=0.548  Sum_probs=27.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|.|||.|..||..|..|+++|++|+-+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            699999999999999999999999999997643

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.80  E-value=0.012  Score=59.06  Aligned_cols=35  Identities=29%  Similarity=0.558  Sum_probs=33.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+++
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            58999999999999999999999999999998765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.74  E-value=0.013  Score=54.40  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|+|||+|..|...|..|+++|++|+++|.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.74  E-value=0.012  Score=55.44  Aligned_cols=33  Identities=39%  Similarity=0.481  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|.|||+|..|.+.|..|+++|++|+++|++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999998743

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.73  E-value=0.015  Score=48.24  Aligned_cols=30  Identities=37%  Similarity=0.587  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           51 VIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      |+|||+|..|+..|+.|++.|++|+++-+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            689999999999999999999999999874

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.57  E-value=0.017  Score=53.69  Aligned_cols=33  Identities=30%  Similarity=0.388  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|..|+++|++|+++|++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            479999999999999999999999999999764

>TIGR02053 MerA mercuric reductase

Probab=95.55  E-value=0.018  Score=57.72  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||+|.+|+-+|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  202 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL  202 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence            689999999999999999999999999999987654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.46  E-value=0.067  Score=54.92  Aligned_cols=56  Identities=14%  Similarity=0.104  Sum_probs=42.1

Q ss_pred             ccHHHHHHhcCC--CCcEEeCceeeEEEec-CCCcCeEEe---CCCc--eEEeccEEEEcCChhH
Q 042352          248 CQIPNQIASKLP--FESILLNTRVLSIDFD-EQNMPNVRL---ANGE--TLKSEIGVILAVEEPE  304 (445)
Q Consensus       248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~-~~~~~~V~~---~~g~--~i~a~~~VV~a~~~~~  304 (445)
                      ..|.+.|.+.+.  |++|+.++.++++..+ ++++++|..   .+|+  .+.|+ .||+||+-..
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  189 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSK-ATVLATGGAG  189 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCcc
Confidence            346666666543  8999999999999875 556777765   3564  47888 7999999865

>PRK06370 mercuric reductase; Validated

Probab=95.45  E-value=0.021  Score=57.19  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~  208 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP  208 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence            36899999999999999999999999999999887653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.42  E-value=0.021  Score=57.18  Aligned_cols=36  Identities=33%  Similarity=0.526  Sum_probs=33.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il  210 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI  210 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            589999999999999999999999999999987754

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.41  E-value=0.24  Score=48.08  Aligned_cols=229  Identities=15%  Similarity=0.116  Sum_probs=0.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      ....++|||+|.+|..|+-.|.+.|.  +++++-+....-=--  .+..+.....|.    .......+++++.++++..
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr--~~Ls~~~~~~~~----~~a~r~~e~Yke~gIe~~~  146 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDR--ARLSKFLLTVGE----GLAKRTPEFYKEKGIELIL  146 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccc--hhcccceeeccc----cccccChhhHhhcCceEEE


Q ss_pred             ecCCcEEEeCCeeEeccCCccchHHHHHhhcCC---ccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC-
Q 042352          125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANP---IGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS-  200 (445)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~-  200 (445)
                      -..-..+....+.....+......+.+--....   ..............++...            .........+.. 
T Consensus       147 ~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireie------------da~~l~~~~~~~~  214 (478)
T KOG1336|consen  147 GTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIE------------DANRLVAAIQLGG  214 (478)
T ss_pred             cceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHH------------HHHHHHHHhccCc


Q ss_pred             -----------HHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCcee
Q 042352          201 -----------DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRV  269 (445)
Q Consensus       201 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V  269 (445)
                                 -++...+...-.....-.+.......++......              .+.+.+++.  |+++++++.+
T Consensus       215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~--------------~~~~y~e~k--gVk~~~~t~~  278 (478)
T KOG1336|consen  215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQ--------------FYEDYYENK--GVKFYLGTVV  278 (478)
T ss_pred             eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHH--------------HHHHHHHhc--CeEEEEecce


Q ss_pred             eEEEecC-CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcC
Q 042352          270 LSIDFDE-QNMPNVRLANGETLKSEIGVILAVEEPEADKLLR  310 (445)
Q Consensus       270 ~~I~~~~-~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~  310 (445)
                      .+++-+. +++..|.+.||+++.|| .||+.++....-+++.
T Consensus       279 s~l~~~~~Gev~~V~l~dg~~l~ad-lvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  279 SSLEGNSDGEVSEVKLKDGKTLEAD-LVVVGIGIKPNTSFLE  319 (478)
T ss_pred             eecccCCCCcEEEEEeccCCEeccC-eEEEeecccccccccc

>PRK07846 mycothione reductase; Reviewed

Probab=95.34  E-value=0.023  Score=56.65  Aligned_cols=37  Identities=14%  Similarity=0.300  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||..|+-.|..|++.|.+|+++|+.+++.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            3689999999999999999999999999999987654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.32  E-value=0.024  Score=56.70  Aligned_cols=36  Identities=17%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||||.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll  206 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL  206 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            589999999999999999999999999999987653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.27  E-value=0.025  Score=52.49  Aligned_cols=33  Identities=33%  Similarity=0.450  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            479999999999999999999999999999754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.27  E-value=0.025  Score=56.62  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il  210 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC  210 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            4689999999999999999999999999999977653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.25  E-value=0.024  Score=56.31  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||||..|+-.|..|++.|.+|+++|+.+++.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~  184 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN  184 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            589999999999999999999999999999987764

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.24  E-value=0.03  Score=56.06  Aligned_cols=38  Identities=26%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++|+.+++..
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            36899999999999999999999999999999887653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.23  E-value=0.023  Score=52.87  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|+|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            699999999999999999999999999998643

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.23  E-value=0.025  Score=56.62  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l  208 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL  208 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            589999999999999999999999999999876653

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.23  E-value=0.03  Score=52.81  Aligned_cols=34  Identities=29%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||+|..|.+-|..|+++|++|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3579999999999999999999999999998853

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.20  E-value=0.027  Score=50.23  Aligned_cols=33  Identities=33%  Similarity=0.669  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +++|||+|--|.+.|..|.+.|++|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            699999999999999999999999999998744

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.17  E-value=0.034  Score=46.92  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCCH-HHHHHHHHHHHCCCCEEEEecC
Q 042352           46 ERKDRVIVIGAGL-AGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~-~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      -...+|+|||+|- .|..+|.+|.++|.+|+++.++
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            3568999999995 7999999999999999999975

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.16  E-value=0.028  Score=55.61  Aligned_cols=36  Identities=28%  Similarity=0.621  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            368999999999999999999999999999988765

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.15  E-value=0.028  Score=56.00  Aligned_cols=34  Identities=35%  Similarity=0.631  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||+|.+|+.+|..|+++|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999864

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.11  E-value=0.025  Score=49.55  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            35789999999999999999999999999998764

...

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.01  E-value=0.037  Score=51.99  Aligned_cols=32  Identities=31%  Similarity=0.348  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|+|||+|..|...|+.|++.|.+|+++.|.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            47999999999999999999999999999985

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.00  E-value=0.032  Score=52.06  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.98  E-value=0.038  Score=51.65  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|...|..|++.|++|+++|++.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            3569999999999999999999999999999764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.98  E-value=0.036  Score=52.27  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999754

>TIGR03452 mycothione_red mycothione reductase

Probab=94.98  E-value=0.037  Score=55.17  Aligned_cols=37  Identities=14%  Similarity=0.308  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll  205 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL  205 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence            3589999999999999999999999999999977653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.95  E-value=0.026  Score=51.30  Aligned_cols=43  Identities=35%  Similarity=0.556  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC--------CCCCcceeee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS--------DAVGGRVRTD   90 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~--------~~~GG~~~s~   90 (445)
                      .-+|+|||+|..|.-||..+.-.|.+|+|+|.+        +..|||+.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~  218 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL  218 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence            568999999999999999999999999999988        5568887765

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.95  E-value=0.031  Score=54.90  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|.|||.|..|++.|..|+++|++|+++|++..
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999997643

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.94  E-value=0.04  Score=46.75  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...|+|+|+|..|+.||..|...|++|+++|.+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            478999999999999999999999999999974

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.94  E-value=0.057  Score=43.90  Aligned_cols=34  Identities=35%  Similarity=0.517  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~   80 (445)
                      +..+++|||||-+|-++++.|.+.|.+ |+|+-|+
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            457899999999999999999999987 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=94.93  E-value=0.035  Score=55.74  Aligned_cols=36  Identities=33%  Similarity=0.458  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  219 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL  219 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC
Confidence            589999999999999999999999999999987653

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.63  E-value=0.039  Score=47.71  Aligned_cols=39  Identities=23%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +.....|.|||||..|...|...+..|++|.+++++...
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            345678999999999999999999999999999987543

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.57  E-value=0.056  Score=51.41  Aligned_cols=33  Identities=39%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|+++|++|++++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            379999999999999999999999999999853

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.55  E-value=0.052  Score=51.92  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|.|||+|..|.+.|..|+++|++|++++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            36999999999999999999999999999974

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.49  E-value=0.062  Score=53.48  Aligned_cols=36  Identities=25%  Similarity=0.545  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||||.+|+-+|..|.+.|.+|+++++.+++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  184 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI  184 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            368999999999999999999999999999987654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.47  E-value=0.046  Score=58.35  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll  176 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM  176 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence            3579999999999999999999999999999887753

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.47  E-value=0.051  Score=50.98  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|+|||+|..|...|..|++.|++|++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5999999999999999999999999999984

>PTZ00058 glutathione reductase; Provisional

Probab=94.46  E-value=0.051  Score=55.45  Aligned_cols=37  Identities=11%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il  273 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL  273 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence            4689999999999999999999999999999987653

>PRK04148 hypothetical protein; Provisional

Probab=94.45  E-value=0.041  Score=44.17  Aligned_cols=33  Identities=15%  Similarity=0.444  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .++++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999 999999999999999999997755

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.45  E-value=0.026  Score=50.06  Aligned_cols=33  Identities=36%  Similarity=0.608  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCC
Q 042352           51 VIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAV   83 (445)
Q Consensus        51 viIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~   83 (445)
                      .+|||||++|.+||-.|+..  ..+|+++-+++.+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            68999999999999999986  5689999887654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.39  E-value=0.069  Score=46.83  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||||-.|...|..|.+.|.+|+|+....
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3589999999999999999999999999997643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=94.38  E-value=0.028  Score=52.63  Aligned_cols=89  Identities=25%  Similarity=0.358  Sum_probs=59.8

Q ss_pred             cccccccccccccCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352            7 SSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      |.-.+||-+++-.+.+.-|-     ...++...        ..+.+|||||..||--+..-.+.|.+||++|-.+.+||.
T Consensus       183 SeV~~~PGI~IDekkIVSSt-----gALsL~~v--------Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~  249 (506)
T KOG1335|consen  183 SEVTPFPGITIDEKKIVSST-----GALSLKEV--------PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV  249 (506)
T ss_pred             CccCCCCCeEecCceEEecC-----CccchhhC--------cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence            44556666666555544333     22222221        246999999999999999999999999999999998874


Q ss_pred             eeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352           87 VRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        87 ~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      .-.                .....++.+++.-|+++..
T Consensus       250 mD~----------------Eisk~~qr~L~kQgikF~l  271 (506)
T KOG1335|consen  250 MDG----------------EISKAFQRVLQKQGIKFKL  271 (506)
T ss_pred             cCH----------------HHHHHHHHHHHhcCceeEe
Confidence            210                2245666777666766543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.37  E-value=0.058  Score=50.69  Aligned_cols=30  Identities=37%  Similarity=0.544  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEA   79 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~   79 (445)
                      +|+|||+|..|...|..|+++|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            599999999999999999999999999987

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.35  E-value=0.056  Score=56.06  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      .+|+|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~  349 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP  349 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence            5799999999999999999999999999999887653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.30  E-value=0.054  Score=54.95  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||||..|+-+|..|++.|.+|+++|+.+.
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~  386 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE  386 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence            46899999999999999999999999999986543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.23  E-value=0.056  Score=57.94  Aligned_cols=37  Identities=32%  Similarity=0.412  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll  181 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM  181 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence            3579999999999999999999999999999987653

>PRK06116 glutathione reductase; Validated

Probab=94.13  E-value=0.069  Score=53.26  Aligned_cols=36  Identities=33%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            368999999999999999999999999999987654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.09  E-value=0.072  Score=50.04  Aligned_cols=32  Identities=31%  Similarity=0.581  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~   81 (445)
                      +|+|||+|..|.++|+.|+.+|  ..|.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            6999999999999999999999  4899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.09  E-value=0.085  Score=49.43  Aligned_cols=33  Identities=36%  Similarity=0.609  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            379999999999999999999887 899999743

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK10262 thioredoxin reductase; Provisional

Probab=94.03  E-value=0.081  Score=50.13  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            46899999999999999999999999999998643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=94.00  E-value=0.081  Score=52.68  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            4689999999999999999999999999998754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.00  E-value=0.048  Score=41.95  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +..+|+|||+|-.|..-+..|.+.|.+|+|+...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3568999999999999999999999999999875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.99  E-value=0.084  Score=52.50  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  194 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL  194 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999976553

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.92  E-value=0.072  Score=50.44  Aligned_cols=31  Identities=29%  Similarity=0.553  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|.|||+|.-||+.|..|++.|++|+.+|..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid   32 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDID   32 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence            6999999999999999999999999999864

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.92  E-value=0.086  Score=50.84  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+|+|||+|..|+.+|..|.+.|.+|+++|++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            3467999999999999999999999999999985

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.90  E-value=0.077  Score=53.02  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999765

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.85  E-value=0.07  Score=54.68  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||||..|+-.|..|++.|.+|+++++.+.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            468999999999999999999999999999988753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.82  E-value=0.091  Score=50.50  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~   81 (445)
                      ..+++|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            35799999999999999999999997 99998753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.78  E-value=0.11  Score=50.37  Aligned_cols=74  Identities=20%  Similarity=0.287  Sum_probs=46.8

Q ss_pred             ccccccccccccCCCCcccccccc-CCCCcccccc-cccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352            8 SSLLFPSFTINSKPHRFTFNIQAS-SSSSSKQLSL-NSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+.||=++.+.=+.|.-++..-. .++.....+. .........|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus       160 ~~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         160 GKLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCCCCEEEecchhhcccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            346777777665555555544210 0110111111 1112345789999999999999999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02572 UDP-sulfoquinovose synthase

Probab=93.73  E-value=0.15  Score=50.66  Aligned_cols=33  Identities=33%  Similarity=0.600  Sum_probs=29.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...|+|.|| |..|...+..|+++|++|+++++.
T Consensus        47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~   80 (442)
T PLN02572         47 KKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL   80 (442)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            457999997 999999999999999999999853

>PLN02546 glutathione reductase

Probab=93.70  E-value=0.088  Score=53.72  Aligned_cols=37  Identities=14%  Similarity=0.229  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+.+.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il  288 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL  288 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence            4589999999999999999999999999999877654

>PRK12831 putative oxidoreductase; Provisional

Probab=93.70  E-value=0.098  Score=52.29  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            34689999999999999999999999999998753

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.69  E-value=0.12  Score=45.24  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3468999999999999999999999999999764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.67  E-value=0.11  Score=52.38  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...|.|||+|..|...|..|+++|++|+++|++..
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            35699999999999999999999999999997754

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=93.67  E-value=0.067  Score=48.93  Aligned_cols=35  Identities=23%  Similarity=0.533  Sum_probs=30.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CC-CEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQ-GR-PFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~-G~-~V~vlE~~   80 (445)
                      .++++|+|||||.+|++.|..+.++ |. +|.|+|-.
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~   73 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA   73 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence            3679999999999999999999987 54 89999854

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.66  E-value=0.091  Score=53.38  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~  385 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE  385 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence            46899999999999999999999999999987543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.60  E-value=0.1  Score=49.51  Aligned_cols=32  Identities=31%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||+|..|...|..|++.|++|++++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999863

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.59  E-value=0.1  Score=49.98  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~   80 (445)
                      .+|+|||||-.|.++|+.|+++| .+|+|.+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            57999999999999999999998 899999987

>PRK14694 putative mercuric reductase; Provisional

Probab=93.58  E-value=0.1  Score=52.26  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            58999999999999999999999999999874

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.56  E-value=0.091  Score=52.57  Aligned_cols=34  Identities=26%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            3579999999999999999999999999999654

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.53  E-value=0.083  Score=51.95  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            599999999999999999999999999998644

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.46  E-value=0.13  Score=45.00  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999998 69999975

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=93.45  E-value=0.11  Score=52.13  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            47999999999999999999999999999873

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.44  E-value=0.13  Score=48.45  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|.+.|..|+++|++|++++++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999999999999999999999864

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.44  E-value=0.11  Score=52.43  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||+|..|..-|..|+++|++|+++|+++
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            69999999999999999999999999999763

>PRK13748 putative mercuric reductase; Provisional

Probab=93.43  E-value=0.1  Score=53.60  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+++|||||..|+-.|..|++.|.+|+|+++..
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            3589999999999999999999999999999753

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=93.37  E-value=0.12  Score=48.28  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            4689999999999999999999999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00052 thioredoxin reductase; Provisional

Probab=93.34  E-value=0.12  Score=52.28  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            47999999999999999999999999999873

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.32  E-value=0.12  Score=43.58  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||-|..|...|..|.++|++|.+++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            479999999999999999999999999999763

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14727 putative mercuric reductase; Provisional

Probab=93.30  E-value=0.12  Score=51.88  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            57999999999999999999999999999974

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.26  E-value=0.16  Score=42.50  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEe
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLE   78 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE   78 (445)
                      +..+|+|||||-.|..-|..|.+.|++|+|+.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            35689999999999999999999999999995

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.23  E-value=0.12  Score=51.86  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|.|||+|..|...|..|+++|++|+++|++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998733

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.18  E-value=0.12  Score=51.97  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...|+|+|.|.+|++++..|.+.|++|++.|.+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999999999999999999999999999965

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.17  E-value=0.12  Score=48.97  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||||..|.+-|..|+++|++|+++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999999853

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.13  E-value=0.11  Score=50.80  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            568999999999999999999999999999976665

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.10  E-value=0.079  Score=51.13  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=42.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-------------CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHh
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG-------------RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKL  114 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G-------------~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l  114 (445)
                      ..+++|||||++|.=.|..|++.-             .+|+++|+.+++.-                ++-........+.
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp----------------~~~~~l~~~a~~~  218 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP----------------MFPPKLSKYAERA  218 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc----------------CCCHHHHHHHHHH
Confidence            357999999999999999998741             27888887766531                1001123456778


Q ss_pred             hcccCCccee
Q 042352          115 LDYNALNLQK  124 (445)
Q Consensus       115 ~~~lgl~~~~  124 (445)
                      ++++|+++..
T Consensus       219 L~~~GV~v~l  228 (405)
T COG1252         219 LEKLGVEVLL  228 (405)
T ss_pred             HHHCCCEEEc
Confidence            8888887643

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.10  E-value=0.1  Score=52.06  Aligned_cols=34  Identities=38%  Similarity=0.497  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+|+|||+|..||.|+..+...|.+|.++|.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~  197 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR  197 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999999875

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.02  E-value=0.15  Score=50.69  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ...|+|+|.|-+|+++|..|+++|++|++.|.....
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            357999999999999999999999999999976543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.99  E-value=0.13  Score=51.21  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...++|+|+|-+|+++|..|++.|++|++.|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3569999999999999999999999999999754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=92.98  E-value=0.18  Score=47.68  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~   82 (445)
                      ..+|+|||||-.|.+.|+.|+..|+ +|+++|.+..
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            4689999999999999999999996 8999998654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.92  E-value=0.13  Score=51.53  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            357999999999999 59999999999999997654

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.83  E-value=0.15  Score=47.31  Aligned_cols=33  Identities=36%  Similarity=0.470  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...|.|||||..|-..|+.++..|++|+++|.+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            357999999999999999999988999999987

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.74  E-value=0.16  Score=53.66  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...|+|||||..|...|+.++..|++|+++|.+..
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            45799999999999999999999999999998643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.72  E-value=0.19  Score=44.82  Aligned_cols=35  Identities=29%  Similarity=0.532  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR---PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~---~V~vlE~~~   81 (445)
                      +..+++|+|||-+|..+|..|.+.|.   +|.|++++.
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            34689999999999999999999997   499999873

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.72  E-value=0.15  Score=47.29  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||.|..|.+.|..|.++|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999753

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.67  E-value=0.15  Score=50.78  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~   80 (445)
                      .+|+|||+|..|+..|..|+++|  ++|+.+|.+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            36999999999999999999985  789999865

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=92.59  E-value=0.29  Score=50.08  Aligned_cols=42  Identities=26%  Similarity=0.304  Sum_probs=37.1

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |.++++++.+++|.. .+++.+|.+.||..+.|+ .||.|++..
T Consensus       201 Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad-~VV~a~GIr  242 (793)
T COG1251         201 GIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPAD-LVVMAVGIR  242 (793)
T ss_pred             cceeecccchhhhhc-CcceeeEeecCCCcccce-eEEEecccc
Confidence            999999999999987 456789999999999998 899999873

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.53  E-value=0.19  Score=47.29  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~   82 (445)
                      .+|+|||+|..|.+.|+.|+..|. +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999999876 9999998543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=92.44  E-value=0.21  Score=46.66  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+++|||+|..|..+|..|.+.|.+|++++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35789999999999999999999999999999874

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.44  E-value=0.25  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....++|+|.|-.|..+|..|.+.|++|++.|++.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            44679999999999999999999999999998763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.44  E-value=0.18  Score=53.06  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ....|+|||||..|...|+.++.+|++|+++|.+..
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            446799999999999999999999999999997643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN00016 RNA-binding protein; Provisional

Probab=92.27  E-value=0.17  Score=49.25  Aligned_cols=35  Identities=23%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             CCcEEEE----CC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVI----GA-GLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviII----Ga-G~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|+    || |..|...+..|.++|++|+++.|+..
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~   91 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKE   91 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence            3579999    76 99999999999999999999998643

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.25  E-value=0.21  Score=46.23  Aligned_cols=34  Identities=32%  Similarity=0.503  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..+|+|||+|-+|-++|+.|++.|. +|+|++|+.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            3579999999999999999999997 799998863

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.21  E-value=0.19  Score=50.36  Aligned_cols=32  Identities=34%  Similarity=0.532  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|.|+|.|-+|+++|..|.++|++|++.|+.
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            46999999999999999999999999999975

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=92.15  E-value=0.23  Score=49.57  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|..|+-+|..|.+.|. +|+++++.
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            35689999999999999999999998 89999874

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.14  E-value=0.18  Score=50.16  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=28.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            3579999999999999999995 9999999954

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.14  E-value=0.21  Score=48.56  Aligned_cols=31  Identities=19%  Similarity=0.398  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||.|..|+..|..++. |++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            59999999999999988875 99999999763

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.12  E-value=0.19  Score=49.50  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||-|.+|+++|..|.++|++|++.|++.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=92.12  E-value=0.2  Score=49.44  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHH--------------CCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHS--------------QGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~--------------~G~~V~vlE~~~~~   83 (445)
                      .+++|||||.+|+-.|..|++              .+.+|+++|+.+.+
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            379999999999999999986              37889999986553

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=92.04  E-value=0.19  Score=53.04  Aligned_cols=36  Identities=33%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ....|.|||||..|...|+.++..|++|+++|.++.
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            345799999999999999999999999999997643

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.04  E-value=0.28  Score=40.13  Aligned_cols=31  Identities=39%  Similarity=0.559  Sum_probs=28.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           50 RVIVIGA-GLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        50 dviIIGa-G~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +|+|||| |.-|-+.|+.|...+.  ++.++|.+
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            6999999 9999999999999965  79999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.03  E-value=0.37  Score=35.56  Aligned_cols=33  Identities=33%  Similarity=0.548  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEec
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEA   79 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~   79 (445)
                      ...+++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            346799999999999999999998 678999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.91  E-value=0.24  Score=46.57  Aligned_cols=33  Identities=36%  Similarity=0.635  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~   82 (445)
                      +|+|||+|-.|.+.|+.|+..|  .+|+++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            6999999999999999999998  47999998643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.90  E-value=0.2  Score=53.92  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHH-HHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAA-ATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsa-A~~L~~~G~~V~vlE~~~   81 (445)
                      +...+|.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus         2 ~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~   38 (809)
T PRK14573          2 MKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE   38 (809)
T ss_pred             CCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence            445579999999999999 999999999999999754

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.82  E-value=0.17  Score=46.96  Aligned_cols=38  Identities=37%  Similarity=0.441  Sum_probs=31.5

Q ss_pred             cccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352           42 NSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA   79 (445)
Q Consensus        42 ~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~   79 (445)
                      ..+.-+.+||+|||+|-+|+-||.-|+--=..|+++|=
T Consensus       348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF  385 (520)
T COG3634         348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF  385 (520)
T ss_pred             CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence            34455678999999999999999999865568999984

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.69  E-value=0.27  Score=52.45  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~   81 (445)
                      ..+|+|||||..|+-+|..|.+.|.+ |+++++.+
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            46899999999999999999999997 99998753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=91.69  E-value=0.24  Score=35.93  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=24.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANG  287 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g  287 (445)
                      |+++++|+.|++|+.++++ +.|+++||
T Consensus        54 gV~v~~~~~v~~i~~~~~~-~~V~~~~g   80 (80)
T PF00070_consen   54 GVEVHTNTKVKEIEKDGDG-VEVTLEDG   80 (80)
T ss_dssp             TEEEEESEEEEEEEEETTS-EEEEEETS
T ss_pred             CCEEEeCCEEEEEEEeCCE-EEEEEecC
Confidence            9999999999999999887 55988886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.67  E-value=0.3  Score=45.89  Aligned_cols=34  Identities=29%  Similarity=0.644  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      +.+|+|||+|-.|.++|+.|+..|.  .+.++|.+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4589999999999999999999876  699999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.65  E-value=0.26  Score=39.94  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            3579999999999999999999998 79999963

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.64  E-value=0.23  Score=50.21  Aligned_cols=34  Identities=26%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...|.|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            3569999999999999999999999999999754

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.60  E-value=0.24  Score=52.14  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~   81 (445)
                      ....|+|||||..|...|..++ +.|++|+++|.++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            3457999999999999999998 5899999999764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.59  E-value=0.28  Score=45.47  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...++|||+|-.|.+.|..|...|.+|++++|+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=91.56  E-value=0.23  Score=46.31  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            48999999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.54  E-value=0.33  Score=38.06  Aligned_cols=32  Identities=28%  Similarity=0.483  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      |+|+|.|-.|...|..|.+.+.+|+++|++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            68999999999999999998779999998743

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.50  E-value=0.28  Score=43.61  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=28.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.||| +|..|.+.|..|+++|++|+++.++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            599997 79999999999999999999998754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.48  E-value=0.26  Score=49.25  Aligned_cols=34  Identities=38%  Similarity=0.524  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+++|+|+|..|+.++..+...|.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=91.44  E-value=0.29  Score=47.43  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=47.0

Q ss_pred             ccccccccccccCCCCccccccccCCCCccccc-cc-ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352            8 SSLLFPSFTINSKPHRFTFNIQASSSSSSKQLS-LN-SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..|.||=++.+-=+.|.-+++.-.-.-+.-.-. .. .-+.....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus       153 ~~L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       153 GVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CCCCCcEEEecchhhchhhhcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            346777777665455555443221111111101 11 112345789999999999999999999999999999765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.26  E-value=0.23  Score=46.50  Aligned_cols=33  Identities=30%  Similarity=0.531  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|.|+|+|..|...|+.|++.|.+|+++=|.++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            699999999999999999999988888876553

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.26  E-value=0.25  Score=46.28  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           51 VIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        51 viIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      |+|||||..|.+.|+.|+..|. +|+++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5899999999999999999876 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.19  E-value=0.3  Score=51.55  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~   81 (445)
                      ....|+|||||..|...|+.++ ..|++|+++|.+.
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            3467999999999999999999 8899999999753

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.91  E-value=0.38  Score=45.80  Aligned_cols=34  Identities=32%  Similarity=0.534  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|--|..+|..|++.|. +++|+|..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999998 89999974

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.87  E-value=0.39  Score=45.32  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~   81 (445)
                      ..+|+|||||..|.+.|+.|+..| .++.++|.+.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            468999999999999999999998 5899999764

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=90.85  E-value=0.32  Score=45.47  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||.|..|...|..|+++|++|++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999863

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.82  E-value=0.29  Score=49.00  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|.|||.|-+|+++|.+|.+.|++|++.|..
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            47999999999999999999999999999965

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.77  E-value=0.37  Score=47.99  Aligned_cols=34  Identities=32%  Similarity=0.602  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            3458999999999999999999999999999764

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.74  E-value=0.36  Score=46.74  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....|+||| .|..|-+.|..|.++|++|+++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            346799999 89999999999999999999999864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.70  E-value=0.38  Score=45.72  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ...+|+|||+|--|..+|..|++.|. +++|+|...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            34689999999999999999999998 899999753

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=90.68  E-value=0.43  Score=44.98  Aligned_cols=34  Identities=26%  Similarity=0.546  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      ..+|+|||+|-.|-++|+.|+..|.  ++.++|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            3689999999999999999999987  799999753

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=90.64  E-value=0.4  Score=44.17  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...++|+|+|-.|.++|+.|++.|++|+|++|+
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457999999999999999999999999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=90.58  E-value=0.48  Score=40.35  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      +|+|||+|-.|...|..|++.|. +++++|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48999999999999999999998 59999975

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.57  E-value=0.44  Score=41.38  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=30.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+++|+|| |..|..+|..|++.|++|+++.|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3468999997 999999999999999999999775

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=90.56  E-value=0.48  Score=44.07  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~   81 (445)
                      ...++|+|||=+|.++|+.|++.|.+ |+|+.|+.
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            45799999999999999999999986 99998864

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=90.54  E-value=0.5  Score=39.22  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~   81 (445)
                      ..+++|||+|..|.+.|..|.+.| .+|++++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            457999999999999999999996 7899998753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.51  E-value=0.38  Score=47.74  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||-|-+|++++..|++.|++|++.|...
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3579999999999999999999999999999754

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=90.37  E-value=0.41  Score=44.83  Aligned_cols=31  Identities=32%  Similarity=0.522  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +|+|||+|-.|.++|+.|..+|.  ++.++|.+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   33 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            48999999999999999999876  69999974

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=90.25  E-value=0.34  Score=48.18  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|.|||.|..|.+.|..|+++|++|++++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998644

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=90.25  E-value=0.8  Score=44.69  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             cCCCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           44 KLERKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        44 ~~~~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+.....|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            3445678999998 9999999999999999999998864

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=90.21  E-value=0.43  Score=47.31  Aligned_cols=36  Identities=36%  Similarity=0.512  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..++|+|||+|.||.-.|..|++.|.+|+++=|++.
T Consensus       174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            458999999999999999999999999999977544

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.21  E-value=0.47  Score=43.33  Aligned_cols=36  Identities=28%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~   82 (445)
                      ....|+|||+|-.|..+|..|++.| .+++|+|....
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            3568999999999999999999999 48999997533

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=90.13  E-value=0.33  Score=48.38  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||+|.+|+=.|..|++.+.+|+++.+..
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            45789999999999999999999999999998854

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=89.98  E-value=0.47  Score=44.63  Aligned_cols=33  Identities=36%  Similarity=0.483  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|..|.+.|.  +|++++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            479999999999999999999985  899998753

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=89.94  E-value=0.48  Score=44.30  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||.|..|...|..|++.|++|++++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            369999999999999999999999999999764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.81  E-value=0.63  Score=41.05  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999998 59999974

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.71  E-value=0.47  Score=39.48  Aligned_cols=35  Identities=31%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....++|+|=|.-|-.+|..|+..|.+|+|.|..+
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            45789999999999999999999999999999864

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02602 lactate dehydrogenase

Probab=89.58  E-value=0.68  Score=44.20  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      .+|+|||+|-.|.++|+.|+..|.  .+.++|.+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            699999999999999999999876  699999754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.55  E-value=0.64  Score=40.69  Aligned_cols=34  Identities=32%  Similarity=0.486  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999999999999999997 89999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02494 adenosylhomocysteinase

Probab=89.53  E-value=0.56  Score=46.13  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            346789999999999999999999999999999865

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.52  E-value=0.69  Score=43.14  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +....++|.|| |-.|...|..|+++|++|.++.++.
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34467899997 8889999999999999999998763

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.50  E-value=0.59  Score=42.12  Aligned_cols=34  Identities=32%  Similarity=0.532  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35789999999999999999999997 78998874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=89.45  E-value=0.48  Score=51.57  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||||-.|+-+|..+.+.|.+|+++.+.+
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            4689999999999999999999999999998764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.43  E-value=0.54  Score=45.94  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            45689999999999999999999999999999765

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=89.32  E-value=0.6  Score=43.16  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~   80 (445)
                      ..+++|+|+|-+|.++|+.|++.| .+|+|+.|+
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            467999999999999999999999 689999886

>PLN02712 arogenate dehydrogenase

Probab=89.20  E-value=1.1  Score=46.94  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|.|||.|..|-+.|..|.+.|++|++++++
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   84 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS   84 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467999999999999999999999999999876

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.19  E-value=0.75  Score=43.95  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +.+|.|||+|.-|.+.|..|+++| .|+++-++
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~   38 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRS   38 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence            357999999999999999999999 67777654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.15  E-value=0.67  Score=37.94  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      +|+|||+|-.|...|..|++.|. +++|+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48999999999999999999998 79999975

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=89.10  E-value=0.41  Score=38.86  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=26.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           51 VIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ++|+|||..+...|..++.-|++|+|+|-.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r   30 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPR   30 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            589999999999999999999999999965

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=89.04  E-value=0.5  Score=46.84  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|.|||-|-+|+++|..|.++|++|++.|....
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~   33 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN   33 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence            378999999999999999999999999997543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=89.03  E-value=0.66  Score=41.95  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35789999999999999999999997 89999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	3e-45
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-44
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	4e-34
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	5e-34
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	9e-34
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-32
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	8e-26
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	1e-23
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-23
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	2e-23
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	8e-23
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	2e-22
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-21
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	1e-21
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-21
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-19
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-17
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	8e-16
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-14
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-13
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	8e-13
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	5e-11
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-10
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-09
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-09
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-09
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	4e-09
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	3e-08
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	3e-08
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	4e-08
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	7e-08
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	1e-07
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-07
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	3e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	3e-07
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	5e-07
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	1e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	2e-06
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-06
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	3e-06
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	6e-06
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	9e-06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-05
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	3e-05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	4e-05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	5e-05
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	7e-05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	1e-04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	1e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	1e-04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	1e-04
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	2e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	2e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	2e-04
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	3e-04
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	3e-04
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	4e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	4e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	7e-04
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	8e-04
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	8e-04

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score =  161 bits (410), Expect = 3e-45
 Identities = 58/379 (15%), Positives = 121/379 (31%), Gaps = 19/379 (5%)

Query: 45  LERKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQI 103
           + +  R+ +IGAG AGLAA   L   G   + +LE +D VGG+  + +  G   + G  +
Sbjct: 3   ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIM 62

Query: 104 FITAYPEAQKLLDYNALNLQKFYSGAKVYY--NGQFHTVADPFRHFWDSIKSLANPIGSV 161
            + +Y   Q+++D     +       +  +     +    DP R     + +    +G +
Sbjct: 63  GVPSYDTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGP--QVMAAVQKLGQL 120

Query: 162 LDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS--IIDSFFRPFFGGIFFDK 219
           L     G        K  E ++    +P  E L   G   +  +  + F  F  G F + 
Sbjct: 121 LATKYQGYDANGHYNKVHEDLM----LPFDEFLALNGCEAARDLWINPFTAFGYGHFDNV 176

Query: 220 ELETSSRLFDF-IFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQN 278
                 +  DF      A GD    A+G   +   + + L       N  +  I  ++  
Sbjct: 177 PAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATLE-HPAERNVDITRITREDG- 234

Query: 279 MPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQ 338
              V +   +  +    ++L V   +           +R+     +   +  D   +   
Sbjct: 235 --KVHIHTTDWDRESDVLVLTVPLEKFLDYS-DADDDEREYFSKIIHQQYMVDACLVKEY 291

Query: 339 EPVLFLNGSGKGI--VNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRE 396
             +            + ++    +              +     +AD   +     V+ +
Sbjct: 292 PTISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADKTQEECRQMVLDD 351

Query: 397 LSDWFGKSTVGSWRHLRTY 415
           +  +              Y
Sbjct: 352 METFGHPVEKIIEEQTWYY 370

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score =  160 bits (406), Expect = 2e-44
 Identities = 72/425 (16%), Positives = 143/425 (33%), Gaps = 61/425 (14%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLH------SQGRPFVLLEASDAVGGRVRTDSVDGFLLDR 99
           + K  V++IG G+ GLAAA  +       +      L+EAS  VGG+++T   DG++++R
Sbjct: 3   DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIER 62

Query: 100 GFQIFITAYPEAQKLLDYNALNLQKF-----YSGAKVYYNGQFHTVADPFRH-FWDSIKS 153
           G   F+     A +L+    L L+          + V  N   H +           I  
Sbjct: 63  GPDSFLERKKSAPQLVK--DLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAP 120

Query: 154 LAN-PIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFF 212
             +  + S+  K    +  I    KT +      +  + E  R     D ++++   P  
Sbjct: 121 FVSTGLFSLSGKARAAMDFILPASKTKD------DQSLGEFFRRR-VGDEVVENLIEPLL 173

Query: 213 GGIFFDKELETSSR-LFDFIFKCLALGDNTI-------------------------PANG 246
            GI+     + S    F   ++      + I                          + G
Sbjct: 174 SGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTG 233

Query: 247 ICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEAD 306
           +  +  +I  +L    +   T+V  +         + L NG TL ++  VI+      A 
Sbjct: 234 LQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYS-LELDNGVTLDAD-SVIVTAPHKAAA 291

Query: 307 KLLRQPVKFQ-----RKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNV 361
            +L +             + + V L F     ++  +     ++ +    +    +    
Sbjct: 292 GMLSELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKK 351

Query: 362 APLYGPLDKALISVSLIGLFADVM----DDNLTAEVIRELSDWFGKSTVGSWRHLRTYRV 417
            P   P  K L+   +     + +    D+++   V+ +L      +  G        R 
Sbjct: 352 WPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNIN--GEPEMTCVTRW 409

Query: 418 RFAQP 422
             + P
Sbjct: 410 HESMP 414

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score =  132 bits (333), Expect = 4e-34
 Identities = 80/422 (18%), Positives = 134/422 (31%), Gaps = 68/422 (16%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP 109
            V V+G G++GLA A  L S+G   VLLE+S  +GG V T ++ G+L+++G   F+   P
Sbjct: 18  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREP 77

Query: 110 EAQKLLDYNALNLQKFYS-----GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDK 164
             + L     L  +   +        VY  G+  +V      F      LA+ I  +  +
Sbjct: 78  ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAF------LASDILPLGAR 131

Query: 165 LLIG--LTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIF------ 216
           L +   L   R     DE         +    R                  GI+      
Sbjct: 132 LRVAGELFSRRAPEGVDE--------SLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQ 182

Query: 217 ----------FDKELETSSRLFDFIFKCLALGDNTIPA--------------NGICQIPN 252
                        E E  S +   I    A     +PA               G+  + +
Sbjct: 183 LSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLID 242

Query: 253 QIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEI--GVILAVEEPEADKLLR 310
            +A+ L  ++  +  RV  +  ++     + +             V+LA       KLLR
Sbjct: 243 ALAASLG-DAAHVGARVEGLARED-GGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLR 300

Query: 311 QP-----VKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGI-VNNMFFATNVAPL 364
                               ++   D   +P  +   FL  + +   +     A+   P 
Sbjct: 301 PLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPF 360

Query: 365 YGPLDKALISVSLIGLFADVM----DDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFA 420
                + L S  + G     +    +D L A    EL    G +        R +R    
Sbjct: 361 RAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVT--ARPSFTRVFRWPLG 418

Query: 421 QP 422
            P
Sbjct: 419 IP 420

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score =  132 bits (333), Expect = 5e-34
 Identities = 76/443 (17%), Positives = 135/443 (30%), Gaps = 73/443 (16%)

Query: 43  SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQ 102
            K     RV VIGAG++GLAAA +L   G    + EA    GG++R+ S DG + D G  
Sbjct: 8   DKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGAN 67

Query: 103 IFITAYPEAQKLLDYNALNLQKFYSGAK----VYYNGQFHTVADPFRHFWDSIKSLANPI 158
               +  +   L+D   L  ++ +  ++    +  NG          +  D IKS     
Sbjct: 68  TMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPV---LLPSNPIDLIKS---NF 121

Query: 159 GSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIF-F 217
            S   KL + L  I    K   Q+   S   +    +   F   ++D    PF  G    
Sbjct: 122 LSTGSKLQMLLEPILWKNKKLSQVSD-SHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGG 179

Query: 218 DKELETSSRLFDFIFKCLALGDNTIPA--------------------------------- 244
           D +  +    F  ++       + I                                   
Sbjct: 180 DPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFL 239

Query: 245 NGICQIPNQIASKLPFESILLNTRVLSIDFDEQ-----NMPNVRLANGETLKSE----IG 295
            G+  + + I   L  + + LN+RVL +          +  ++  A+    +SE      
Sbjct: 240 GGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDA 299

Query: 296 VILAVEEPEADKLLRQP-------VKFQRKPARSTVCLYFSADKDEIPVQEP-----VLF 343
           VI+     +   +                        +  +  ++ +          V  
Sbjct: 300 VIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPS 359

Query: 344 LNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVM----DDNLTAEVIRELSD 399
                        F++ + P   P +  L +  + G     +       L   V  +L  
Sbjct: 360 KEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQ 419

Query: 400 WFGKSTVGSWRHLRTYRVRFAQP 422
             G    G   ++       A P
Sbjct: 420 LLGAE--GEPTYVNHLYWSKAFP 440

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score =  131 bits (330), Expect = 9e-34
 Identities = 71/421 (16%), Positives = 142/421 (33%), Gaps = 63/421 (14%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPF--VLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA 107
           R++++G G+ GLAAA             LLEA + +GG+V T   DGF ++RG   ++  
Sbjct: 6   RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVAR 65

Query: 108 YPEAQKLLDYNALNLQKF-----YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVL 162
                 L++  A+ L +       S A +   G  H           ++  +   +    
Sbjct: 66  KHILTDLIE--AIGLGEKLVRNNTSQAFILDTGGLH------PIPKGAVMGIPTDLDLFR 117

Query: 163 DKLLIGL-TRIRV----LIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFF 217
              L+    +  V    L  +D   +   ++P+ E LR     D++++    P   GI+ 
Sbjct: 118 QTTLLTEEEKQEVADLLLHPSDSLRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYA 176

Query: 218 DKELETSSRLFDFIFKCLALGDNTI-----------------------------PANGIC 248
               + S+      F        ++                                G+ 
Sbjct: 177 GNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLE 236

Query: 249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKL 308
            +  ++   L    I L T +L+I  ++      RL      +    V+L +  P+  +L
Sbjct: 237 SLIERLEEVLERSEIRLETPLLAISREDG---RYRLKTDHGPEYADYVLLTIPHPQVVQL 293

Query: 309 LRQPV--KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGI-VNNMFFATNVAPLY 365
           L      + ++    ST  +    D+ +    E   F+        +             
Sbjct: 294 LPDAHLPELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHS 353

Query: 366 GPLDKALISVSLIGLFADVM----DDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQ 421
            P D  ++   +     D +    D+ L   V+++L    G++     + +   R+    
Sbjct: 354 AP-DHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRT--LEPKQVIISRLMDGL 410

Query: 422 P 422
           P
Sbjct: 411 P 411

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score =  126 bits (318), Expect = 2e-32
 Identities = 62/396 (15%), Positives = 122/396 (30%), Gaps = 45/396 (11%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP 109
           R +V+GAGL GL A   L   G   ++LE S  +GGR       GF L  G    I    
Sbjct: 2   RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGE 61

Query: 110 EA--QKLLDY--NALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL 165
           +     LL      + +       K+ + G+     + ++              SV +K 
Sbjct: 62  DGPLAHLLRILGAKVEIVNSNPKGKILWEGKIFHYRESWKFL------------SVKEKA 109

Query: 166 LIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSS 225
                 +++L +     L   E+P  E ++     +  + S    F G        + ++
Sbjct: 110 KA----LKLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTA 165

Query: 226 RLFDFIFKCLALGDNT-IPANGICQIPNQIASKLPFES----ILLNTRVLSIDFDEQNMP 280
                  +         +   G   + +++   +        IL    V+ I+ +E+   
Sbjct: 166 LELAKEIRAALRWGGPGLIRGGCKAVIDELERII--MENKGKILTRKEVVEINIEEK--- 220

Query: 281 NVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKD 333
            V   + E    ++  I  V   E  KL+ +         +         +     A   
Sbjct: 221 KVYTRDNEEYSFDV-AISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNL-AVPG 278

Query: 334 EIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEV 393
           E  +   ++F  G    ++N     + +          LI   +     +V       + 
Sbjct: 279 EPRIGNTIVFTPGL---MINGFNEPSALDKSLAREGYTLIMAHMALKNGNV--KKAIEKG 333

Query: 394 IRELSDWFGKSTVGSWR-HLRTYRVRFAQPNQSPPT 428
             EL + F +      + +     V   +       
Sbjct: 334 WEELLEIFPEGEPLLAQVYRDGNPVNRTRAGLHIEW 369

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score =  108 bits (271), Expect = 8e-26
 Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 25/270 (9%)

Query: 47  RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT 106
            +  V ++GAG +GLAAAT L   G    ++EA D VGGR  TD++DG +L+ G Q +++
Sbjct: 4   LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ-WVS 62

Query: 107 A-----YPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSV 161
                      +         +++  G  VY +            F  +  +    +  +
Sbjct: 63  PDQTALISLLDE---LGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKE-MDRL 118

Query: 162 LDKLLIGLTRIRVLIKTDEQILTS-SEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKE 220
           +D++     +I         +      V   + L N        D     F  G    K 
Sbjct: 119 IDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARD-NIGLFIAGGMLTKP 177

Query: 221 LETSSRLFDFIFKCLALGDNTIP----------ANGICQIPNQIASKLPFESILLNTRVL 270
             + S L   +    A   + +             G+ Q+  ++A  L  + + LN  V 
Sbjct: 178 AHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALG-DDVFLNAPVR 236

Query: 271 SIDFDEQNMPNVRLANGETLKSEIGVILAV 300
           ++ ++E     V       +++   VILAV
Sbjct: 237 TVKWNESGA-TVLADGDIRVEASR-VILAV 264

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score =  102 bits (255), Expect = 1e-23
 Identities = 51/289 (17%), Positives = 92/289 (31%), Gaps = 33/289 (11%)

Query: 43  SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQ 102
            K++    V+V+G G AGL +A  L   G    +LEA    GGRV T        D   +
Sbjct: 6   GKVKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGE 65

Query: 103 IFITAYPEAQ-------------KLLDYNA---LNLQKFY---SGAKVYYNGQFHTVADP 143
                + E                 LDY     + +Q F    +   V Y          
Sbjct: 66  TQKCTFSEGHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQS 125

Query: 144 FRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI 203
             +   +       +  +L K        +VL + D+  L+       +L  +  +  S 
Sbjct: 126 VTYR-AAKADTFGYMSELLKKATDQGALDQVLSREDKDALSEFLSDFGDLSDDGRYLGSS 184

Query: 204 IDSFFRPFFGGIFFDKELETSS---RLFDFIFKCLALGDNT-------IPANGICQIPNQ 253
              +      G+ F  E +  +    +   I +  +             P  G+ +I   
Sbjct: 185 RRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYA 244

Query: 254 IASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIG--VILAV 300
              ++  ++I+    V S+    + +  V    G + KS      I  +
Sbjct: 245 FQDRIGTDNIVFGAEVTSMKNVSEGV-TVEYTAGGSKKSITADYAICTI 292

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score =  101 bits (254), Expect = 2e-23
 Identities = 58/271 (21%), Positives = 101/271 (37%), Gaps = 26/271 (9%)

Query: 47  RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFI 105
            K  V+V+G G++G+AAA  LH  G   V+LEA D VGGR  T  +     +D G     
Sbjct: 3   NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62

Query: 106 TAYPEAQKLLDYNALNLQKFYSGAKVYY--NGQFHTVADPFRHFWDSIKSLA-NPIGSVL 162
                  +L     L   K     ++ +   G+ +    PF   W+ I  L  N     +
Sbjct: 63  PTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTM 122

Query: 163 DKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS---IIDSFFRPFFGG----- 214
           D +   +                  + + ELL  + +++S   +   F            
Sbjct: 123 DDMGREIPSDAPW--KAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEV 180

Query: 215 -----IFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRV 269
                +++ K+   ++R+          G       G  Q+  +I   L  + + L   V
Sbjct: 181 SALWFLWYVKQCGGTTRIISTTNG----GQERKFVGGSGQVSERIMDLLG-DRVKLERPV 235

Query: 270 LSIDFDEQNMPNVRLANGETLKSEIGVILAV 300
           + ID   +N+  V   N E  +++  VI A+
Sbjct: 236 IYIDQTRENV-LVETLNHEMYEAKY-VISAI 264

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score =  101 bits (253), Expect = 2e-23
 Identities = 50/258 (19%), Positives = 89/258 (34%), Gaps = 20/258 (7%)

Query: 41  LNSKLERKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTD-SVDGFLLD 98
           +N+    K +VI+IGAG+AGL AA+ LH  G +  ++LEA D VGGR++T     G   D
Sbjct: 1   MNTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYD 60

Query: 99  RGFQIFITA-----YPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKS 153
            G            + E  +L   +      F     +Y + +   V        + + +
Sbjct: 61  IGASWHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDN 120

Query: 154 LANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFG 213
             +    +     +G++         + +L   +    + +R        +    R    
Sbjct: 121 EMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIR-------YLPQLCRYLEL 173

Query: 214 GIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSID 273
               D   +  S    +       G N         +  +IA   P   + L+  V SI 
Sbjct: 174 WHGLD--WKLLSAKDTYFG---HQGRNAFAL-NYDSVVQRIAQSFPQNWLKLSCEVKSIT 227

Query: 274 FDEQNMPNVRLANGETLK 291
            +      V   +G    
Sbjct: 228 REPSKNVTVNCEDGTVYN 245

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 99.1 bits (247), Expect = 8e-23
 Identities = 48/263 (18%), Positives = 90/263 (34%), Gaps = 24/263 (9%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD---SVDGFLLDRGFQIFI-T 106
            IV+G G +GL AA  L + G+  +LLE  + +GGR  +    +V G  ++ G       
Sbjct: 4   AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63

Query: 107 AYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLL 166
            +P     LD   +            +      V   F        ++          LL
Sbjct: 64  HHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEA----ATYTLL 119

Query: 167 IGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSR 226
               RI +    + Q L   ++P+ E +  +         F   +   +      + +S 
Sbjct: 120 RDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDLPPVSRQ-FLLAWAWNMLGQ-PADQAS- 176

Query: 227 LFDFIFKCLALGDNTIPANGIC---------QIPNQIASKLPFESILLNTRVLSIDFDEQ 277
               +    A   + +                + + ++ ++P   I L T V  ID    
Sbjct: 177 ALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIP--EIRLQTVVTGIDQSGD 234

Query: 278 NMPNVRLANGETLKSEIGVILAV 300
            + NV + +G   ++   VI+A 
Sbjct: 235 VV-NVTVKDGHAFQAHS-VIVAT 255

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 98.1 bits (244), Expect = 2e-22
 Identities = 50/287 (17%), Positives = 90/287 (31%), Gaps = 24/287 (8%)

Query: 34  SSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD 93
           S    +    K    D VIVIG G  GL A   L   G   +LLEA D +GGR  + ++D
Sbjct: 26  SPPTNIEDTDKDGPWD-VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID 84

Query: 94  GFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKS 153
           G+  + G            + +    ++     S         F    +P    + + ++
Sbjct: 85  GYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA 144

Query: 154 LANPIGSVLDKLL-IGLTRIRVLIKTDEQILTSSEVPII------ELLRNIGFSDSIIDS 206
               + S L K   +  T  R ++     +    E          E +  I    S+ + 
Sbjct: 145 EDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNER 204

Query: 207 FFRPFFGGIFFDKELETSSRLFDFIFKCLALGDN----------TIPANGICQIPNQIAS 256
                F  +     LE SS   +F+      G                +G      +   
Sbjct: 205 SSLEAFILLCSGGTLENSS-FGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWE 263

Query: 257 KLPFE---SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAV 300
           +         +    V S+  +  +   V   +G    ++  V+  +
Sbjct: 264 EAAGTGRLGYVFGCPVRSVVNER-DAARVTARDGREFVAKR-VVCTI 308

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 46/272 (16%), Positives = 97/272 (35%), Gaps = 32/272 (11%)

Query: 50  RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDGFLLDRG-------- 100
           RVIV+GAG++G++AA RL   G    ++LEA+D +GGR+   +  G  ++ G        
Sbjct: 6   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 65

Query: 101 -------FQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKS 153
                  + I  +         D++ L    +     VY         +      +  + 
Sbjct: 66  GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 125

Query: 154 LANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSD-----SIIDSFF 208
           L+  + +     +  L   R+         T  ++ +     +  F++     S+ ++  
Sbjct: 126 LSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVP 185

Query: 209 RPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTR 268
              F     D       R ++ +   LA         G     +  + K+    + LN  
Sbjct: 186 LATFSDFGDDVYFVADQRGYEAVVYYLA---------GQYLKTDDKSGKIVDPRLQLNKV 236

Query: 269 VLSIDFDEQNMPNVRLANGETLKSEIGVILAV 300
           V  I +    +  V+  +     ++  V+++ 
Sbjct: 237 VREIKYSPGGV-TVKTEDNSVYSADY-VMVSA 266

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 96.1 bits (238), Expect = 1e-21
 Identities = 72/410 (17%), Positives = 125/410 (30%), Gaps = 46/410 (11%)

Query: 48  KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFI 105
             ++++IGAG  GL AA RL   G + + L E +D  GG  R+    +GF  D G  +  
Sbjct: 9   TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIF 68

Query: 106 TAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL 165
           + Y     ++D+           + V+  G++           ++I  L        D+ 
Sbjct: 69  SHYQYFDDVMDWAVQGWNVLQRESWVWVRGRWVPYPFQ-----NNIHRL-----PEQDRK 118

Query: 166 LIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDK------ 219
                 +R   +T  +   + E    E      F + I D F RP+   ++         
Sbjct: 119 RCLDELVRSHARTYTEPPNNFE----ESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMST 173

Query: 220 ----------ELETSSRLFDFIFKCLALGDNT---IPANGICQ-IPNQIASKLPFESILL 265
                     +LE   R        L  G N     P  G    I   I  KLP E +  
Sbjct: 174 EWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPSEKLTF 233

Query: 266 NT--RVLSIDFDEQNM----PNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRK- 318
           N+  + ++ID D + +      V   +          +L + +    K   +      K 
Sbjct: 234 NSGFQAIAIDADAKTITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKM 293

Query: 319 PARSTVCLYFSADKDEIPVQEPVLFLN-GSGKGIVNNMFFATNVAPLYGPLDKALISVSL 377
              ST  +         P  +   +L               +N +    P     + + +
Sbjct: 294 VYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEV 353

Query: 378 IGL-FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSP 426
               +  V    L  + I                    YR+    P    
Sbjct: 354 SESKYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFI 403

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 23/270 (8%)

Query: 47  RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT--DSVDGFLLDRGFQIF 104
               V+++GAG+AGL+AA  L   G    +LEAS+  GGRVRT  +   G+  + G    
Sbjct: 32  NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRL 91

Query: 105 ITAYPEAQKLLDYNALNLQKFYS---GAKVYYNGQFHTVADPFRHF---------WDSIK 152
              +   ++ +    L L +F      A  +       V +  +            ++ K
Sbjct: 92  PEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGK 151

Query: 153 SLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFF 212
           S        L K++  L R       ++    S++     L++    S   +D       
Sbjct: 152 SAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKE---YLIKEGDLSPGAVD-MIGDLL 207

Query: 213 GGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSI 272
                       S   D IF            +G+ ++P  +   +  + +  N +V+ I
Sbjct: 208 NEDSGYYVSFIESLKHDDIFAY--EKRFDEIVDGMDKLPTAMYRDIQ-DKVHFNAQVIKI 264

Query: 273 DFDEQNMPNVRLANGETLKSEIG--VILAV 300
             ++Q +  V     +   S     VI+  
Sbjct: 265 QQNDQKVTVVYETLSKETPSVTADYVIVCT 294

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 54/346 (15%), Positives = 102/346 (29%), Gaps = 64/346 (18%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRP--FVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFIT 106
            V+V+G G++GLAA+  L     P   VL+E+S+ +GG +R+    +G + + G +    
Sbjct: 4   TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRP 63

Query: 107 AYPEAQKLLDY-NALNLQKF----------YSGAKVYYNGQFHTVADPFRHFWDSIKSLA 155
           A     + L   + L L                  +Y  G  H +    R         +
Sbjct: 64  AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFS 123

Query: 156 NPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGI 215
            P          GL  +      +       +  +    +       +          G+
Sbjct: 124 KP------LFWAGLRELTKPRGKEP------DETVHSFAQRR-LGPEVASLAMDSLCRGV 170

Query: 216 FFDKELETSSR-LFDFIFKCLALGDNTIPA------------------------------ 244
           F     E S R  F  +F+      + +                                
Sbjct: 171 FAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLR 230

Query: 245 NGICQIPNQIASKL--PFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEE 302
            G+  +P  + + L     S+L    V  +    +           +L+++  VI A+  
Sbjct: 231 GGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGR-WKVSLRDSSLEAD-HVISAIPA 288

Query: 303 PEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSG 348
               +LL        +   +      S     +  Q   L + G G
Sbjct: 289 SVLSELLPAEAAPLARALSA--ITAVSVAVVNLQYQGAHLPVQGFG 332

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 82.6 bits (203), Expect = 3e-17
 Identities = 48/276 (17%), Positives = 88/276 (31%), Gaps = 43/276 (15%)

Query: 43  SKLERKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASDAVGGRVRTD-SVDGFLLDRG 100
           +  +    V+VIGAG  GL AA RL+   G  ++++++++  GG   TD + +GFL D G
Sbjct: 5   THPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVG 64

Query: 101 FQIFITAYPEAQKLLDYNALNLQKFY---SGAKVYYNGQFHTVADPFRHFWDSIKSLANP 157
             +  + Y      LD        +Y     + V   GQ+              +     
Sbjct: 65  GHVIFSHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKC 124

Query: 158 IGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFF 217
           I  ++D  L            DE I+                   I D F RP+   ++ 
Sbjct: 125 IDGMIDAALEARVANTKPKTFDEWIVRM-------------MGTGIADLFMRPYNFKVWA 171

Query: 218 DKELETSSRLFDFIFKCLALG-----------DNTIPANGICQIPNQIASKLPFESIL-- 264
               +              L                  N   + P +  +   + ++   
Sbjct: 172 VPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANT 231

Query: 265 ---------LNTRVLSIDFDEQNMPNVRLANGETLK 291
                       +V  ++ + +    V L +G T+ 
Sbjct: 232 LPKEKTRFGEKGKVTKVNANNK---TVTLQDGTTIG 264

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 74.1 bits (181), Expect = 3e-14
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 42  NSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGF 101
               ++  +VI+IG+G++GLAAA +L S G    LLEA D VGGRV T     ++ D G 
Sbjct: 101 PLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGA 160

Query: 102 QIF--ITAYPEAQKLLDYNALNLQKFYSGAKVYY-NGQ------FHTVADPFRHFWDSIK 152
            +   +   P A      N + L K      +Y  NGQ         V   F    ++  
Sbjct: 161 MVVTGLGGNPMAVVSKQVN-MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 219

Query: 153 SLANPIG 159
            L++ + 
Sbjct: 220 YLSHQLD 226

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 50/321 (15%), Positives = 95/321 (29%), Gaps = 62/321 (19%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG--------- 100
           + +VIGAGL GL +A RL   G    + E     GGR    S  GF L  G         
Sbjct: 2   KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGP 61

Query: 101 ---FQIFITAYPEAQKLLDYNA----LNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKS 153
                 F+     +  ++        + L+K        +             + D +K 
Sbjct: 62  GGPLACFLKEVEASVNIVRSEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMK- 120

Query: 154 LANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFG 213
                   +  L++   + R    + +  + S              SD  +  F   F G
Sbjct: 121 --------IALLIVSTRKNRPSGSSLQAWIKS------------QVSDEWLIKFADSFCG 160

Query: 214 GIFFDKELETSS----RLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFES----ILL 265
                K  E        + + +++    G   IP  G   I + + +     +    I  
Sbjct: 161 WALSLKSDEVPVEEVFEIIENMYRFGGTG---IPEGGCKGIIDALETV--ISANGGKIHT 215

Query: 266 NTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLL------RQPVKFQRKP 319
              V  I  +      + +A+     +++ VI  +       L            + +  
Sbjct: 216 GQEVSKILIENGKAAGI-IADDRIHDADL-VISNLGHAATAVLCSEALSKEADAAYFKMV 273

Query: 320 ARST----VCLYFSADKDEIP 336
                   + +  +AD+  + 
Sbjct: 274 GTLQPSAGIKICLAADEPLVG 294

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 69.6 bits (169), Expect = 8e-13
 Identities = 26/55 (47%), Positives = 36/55 (65%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG 100
           ++  +VI+IG+G++GLAAA +L S G    LLEA D VGGRV T     ++ D G
Sbjct: 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 330

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 62.8 bits (152), Expect = 5e-11
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDR-GFQIFITAYP 109
            I++G+GL G   A  L    +  +++E  + +GG   T+  +G  + + G  IF T   
Sbjct: 4   YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDK 63

Query: 110 EAQKLLDYNALNLQKFYSGAKVYYNGQF 137
                +  + +   +F +     Y  + 
Sbjct: 64  YIWDYV-NDLVEFNRFTNSPLAIYKDKL 90

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           V+VIG G +GL+A   L   G  +V+L+A  + GG
Sbjct: 5  DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 58.4 bits (140), Expect = 2e-09
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 12/162 (7%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEA-SDAVGGRVRTDSVDGFLLDRGFQIFITA- 107
           R++++GAG+AGL A   L   G    +LEA ++ VGGR++T                 A 
Sbjct: 46  RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAE 105

Query: 108 -----YPEAQ----KLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPI 158
                 P        L+D   L  + F++       G       P  +            
Sbjct: 106 AGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKS-FKDGKTWTN 164

Query: 159 GSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS 200
           G+   +      R    I+T+ + +  ++        N GF 
Sbjct: 165 GAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFH 206

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 49/350 (14%), Positives = 100/350 (28%), Gaps = 48/350 (13%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFL-------------- 96
           VIV+G GL     +  +   G+  + ++ +   GG   + +    L              
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68

Query: 97  -------LDRGFQIFITAYPEAQKLLDYNALNLQKF--YSGAKVYYNGQFHTV-ADPFRH 146
                  +D   +  +      + LL         F    G+ VY  G+ + V +     
Sbjct: 69  GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128

Query: 147 FWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDS 206
              ++  +         K L+ +           + +      + ++ R       +ID 
Sbjct: 129 LASNLMGMFEKRR--FRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVID- 185

Query: 207 FFRPFFGGIFFDKELETSSRLFDFIFKCLA-------LGDNTIPANGICQIPNQIASKLP 259
           F          D  L+          K  +             P  G+ ++P   A    
Sbjct: 186 FTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSA 245

Query: 260 FE--SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQR 317
               + +LN  V  I  +   +  V+ + GE  + +  +      P+        V+   
Sbjct: 246 IYGGTYMLNKPVDDIIMENGKVVGVK-SEGEVARCKQLICDPSYVPDR-------VRKAG 297

Query: 318 KPARSTVCLYFSADKDEIPVQEPVLF----LNGSGKGIVNNMFFATNVAP 363
           +  R    L              ++     +N      V  + +A NVA 
Sbjct: 298 QVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAA 347

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 45  LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG---RVRTDSVDGFLLDRGF 101
           ++ K  ++++GAG +G     +L  +G    +++  D +GG     R    +  +   G 
Sbjct: 1   MKSKK-ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGP 59

Query: 102 QIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFW 148
            IF T        ++     +  + +  K   NGQ    + P     
Sbjct: 60  HIFHTDNETVWNYVN-KHAEMMPYVNRVKATVNGQV--FSLPINLHT 103

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFV---LLEASDAVGGRVRT---DSVDGFLLDRGFQI 103
           +V+++GAG+ G   A  L  Q    +   + + +D  GGR+ T           D G Q 
Sbjct: 3   QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQY 62

Query: 104 FITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFW 148
                  A+K   +    L                          
Sbjct: 63  ITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVA 107

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 30  ASSSSSSKQLSLNSKLERKD-RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
            ++  + +  + N + E K    +++GAG AG   A RL S G+  ++++    +GG   
Sbjct: 10  VTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY 69

Query: 89  T--DSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQF 137
              D     +   G  IF T   +  + L       + +        +GQ 
Sbjct: 70  DCYDDAGVLIHPYGPHIFHTNSKDVFEYL-SRFTEWRPYQHRVLASVDGQL 119

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           V+V+GAG +GL A  RL   GR   ++E +  VGG
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 42 NSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          N         +VIGAG+ G+  A  ++  G   + +EA + VGG
Sbjct: 3  NRAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 53.7 bits (130), Expect = 7e-08
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           V+V+GAG+AGL A  R  SQG      EA+  VGG
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 22  HRFTFNIQASSSSSSKQLSLNSKLERKDR-----------VIVIGAGLAGLAAATRLHSQ 70
           H F F++        K + +++    +D+           V++IG+G AGLAAA      
Sbjct: 89  HSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDA 148

Query: 71  GRPFVLLEASDAVGG 85
           G   +LLE     GG
Sbjct: 149 GAKVILLEKEPIPGG 163

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          +  +V +IGAG AG+  A  L   G   V++     VG   +
Sbjct: 3  QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFK 44

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 28 IQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84
          I      SS +   N   +   + IVIGAG+ GL+AA  L   G    + EA   + 
Sbjct: 6  IHHHHHHSSGE---NLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 29  QASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           + +   S +Q +L S       V+V+G+G AG +AA      G   +L+E    +GG
Sbjct: 107 ELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 42 NSKLERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGG 85
           ++       +VIGAG  G+ A  +LH + G   V  + +D  GG
Sbjct: 2  TAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 52/333 (15%), Positives = 97/333 (29%), Gaps = 100/333 (30%)

Query: 44  KLERKDRVIVIGAGLAG---LAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG 100
           +L     V++ G   +G   +A                          +  V   +    
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDV---------------------CLSYKVQCKM---D 181

Query: 101 FQIF---ITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANP 157
           F+IF   +      + +L+     LQK         +  + + +D       +IK   + 
Sbjct: 182 FKIFWLNLKNCNSPETVLE----MLQKLLYQI----DPNWTSRSDHS----SNIKLRIHS 229

Query: 158 IGSVLDKLLIGLTRIRVLIKTDE--------------QIL-TSSEVPIIELLRNIGFSDS 202
           I + L +LL        L+                  +IL T+    + + L     +  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 203 IIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFES 262
            +D                +    L     K L                +     LP E 
Sbjct: 290 SLDHHSMTL--------TPDEVKSLL---LKYL----------------DCRPQDLPREV 322

Query: 263 ILLNTRVLSIDFDE--QNMP----NVRLANGETLKSEIGVILAVEEP-EADKLLRQPVKF 315
           +  N R LSI   E  ++      N +  N + L + I   L V EP E  K+  +   F
Sbjct: 323 LTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 316 QRK---PARSTVCLYFSADKDEIPVQEPVLFLN 345
                 P    + L +     ++   + ++ +N
Sbjct: 382 PPSAHIPT-ILLSLIWF----DVIKSDVMVVVN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 58/438 (13%), Positives = 114/438 (26%), Gaps = 165/438 (37%)

Query: 78  EASDAVGGRVRTDSVDGFL-----LDRGFQIFITAYPEAQKLLDYNALNLQKFYSGA-KV 131
           +  D     +  + +D  +     +    ++F T       LL      +QKF     ++
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-------LLSKQEEMVQKFVEEVLRI 89

Query: 132 YYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPII 191
            Y          F      IK         +   +    R R  +  D Q+     V  +
Sbjct: 90  NY---------KF--LMSPIK--TEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRL 134

Query: 192 ELLRNI-------------------GFSDSII-------DSFFRPFFGGIFF-------- 217
           +    +                   G   + +                 IF+        
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 218 -DKELETSSRLFDFIFKCLALGDN-TIPANGICQIP---NQIASKL-------PFESILL 265
            +  LE   +L         +  N T  ++    I    + I ++L       P+E+ LL
Sbjct: 195 PETVLEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 266 ------NTRVLSIDFD----------EQNMPNVRLANGETLKSEIGVILAVEEPEADKLL 309
                 N +  +  F+           + + +   A   T  S     + +   E   LL
Sbjct: 249 VLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 310 RQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLD 369
            +               Y      ++P +                        P      
Sbjct: 308 LK---------------YLDCRPQDLPRE-------------------VLTTNPR----- 328

Query: 370 KALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQP---NQSP 426
                +S+I             E IR+     G +T  +W+H+   ++        N   
Sbjct: 329 ----RLSIIA------------ESIRD-----GLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 427 PTDLIKNPKSEF-SLAVY 443
           P +     +  F  L+V+
Sbjct: 368 PAEY----RKMFDRLSVF 381

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 14  SFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKD---RVIVIGAGLAGLAAATRLHSQ 70
           SF I   P       ++      +     +         +V+V+GAG AG  A+      
Sbjct: 84  SFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKA 143

Query: 71  GRPFVLLEASDAVGG 85
           G   +L++ +   GG
Sbjct: 144 GANVILVDKAPFSGG 158

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 40 SLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84
          ++N    +  R  V G G AGL AA  L   G    L E S  + 
Sbjct: 3  NVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR 47

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 51  VIVIGAGLAGLAAATRL-HSQGRPFVLLEASDAVGGRVRT--DSVDGFLL-DRGFQIFIT 106
           + V+G+G  GL  A R+     +  ++LE    +GG   +  +   G  +   G  +F T
Sbjct: 10  LFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT 69

Query: 107 AYPEAQKLLD-YNALNLQKFYSGAKVYYNGQF 137
           +       +  +      +    A   +NGQ 
Sbjct: 70  SNKRVWDYVRQFTDFTDYRHRVFA--MHNGQA 99

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 44  KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
           + + KD V+++GAG +G  AA  L   G    L + ++ +GG + 
Sbjct: 385 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLN 429

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 44  KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
             E   RV+V+GAG +GL AA  L  +G   VL EA   +GGRV 
Sbjct: 387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVT 431

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80
             DR+ V+G  ++GL AA  L   G    + E S
Sbjct: 3  PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS 37

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 48.4 bits (114), Expect = 3e-06
 Identities = 46/356 (12%), Positives = 106/356 (29%), Gaps = 47/356 (13%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG---------------- 94
           VI++G GL     +  L   G+  ++L+ +   GG   + ++                  
Sbjct: 23  VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYG 82

Query: 95  ------------FLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVAD 142
                       F+L  G  + I         L++  +     Y   K  +      +  
Sbjct: 83  ENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHK 142

Query: 143 PFRHFWDSIKSLANPIGSV--LDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS 200
                 +++ S    +            ++      +     L   ++ ++E+ ++    
Sbjct: 143 VPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLC 202

Query: 201 DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL------ALGDNTIPANGICQIPNQI 254
              ID         +  D   + +    + I   +             P  G+  IP   
Sbjct: 203 QLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGLGGIPEGF 262

Query: 255 ASKLPFE--SILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEADKLLRQ 311
           +        + +LN  V+   FD+ N +  ++ ++GE    +  +     +P     L+ 
Sbjct: 263 SRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVIC----DPSYVMHLKN 318

Query: 312 PVKFQRKPARSTVC----LYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAP 363
            +K   +  R        +  +   +   +  P   LN      +N + F   V  
Sbjct: 319 KIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTL 374

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 44  KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
              +K  + V+GAG AGLA A    ++G    L +A   +GG+  
Sbjct: 369 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN 413

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          V+V G G+AG+AA+      G   ++LE +   GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 29 QASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81
                SS  +   S + R   V +IG G AG  A   LH  G    + E S 
Sbjct: 5  HHHHHHSSGLVPRGSHMTRSK-VAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 22 HRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81
          H    +        S    L+ K      V +IG G  GL  A  L   G    + E  +
Sbjct: 5  HHHHHHSSGLVPRGSHMNLLSDK-----NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59

Query: 82 AVGGR 86
              R
Sbjct: 60 DREAR 64

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 42 NSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS----DAVGG 85
          +++ E  D +IVIG G  G   A+ +  +G   +LLE        +G 
Sbjct: 2  STRPEVFD-LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGE 48

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFV-LLEASDAVG 84
           +++ GAG+ GL+ A  LH  G   V LLE+S  + 
Sbjct: 6  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 45.2 bits (105), Expect = 4e-05
 Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 8/63 (12%)

Query: 46  ERKDRVIVIGAGLAGLAAATRL--------HSQGRPFVLLEASDAVGGRVRTDSVDGFLL 97
               R+ ++G G  G+AA   L           G    + EA        R       + 
Sbjct: 54  AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVR 113

Query: 98  DRG 100
              
Sbjct: 114 GLK 116

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80
          V+VIGAG AG  AA+ ++  G    ++E  
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGFKVKIVEKQ 37

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 20/103 (19%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLE---ASDAVGGRVRTDSVDGFLLDRGFQIFIT 106
           R+ ++GAG AGL     L        +       +  G R+                  T
Sbjct: 24  RIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLN----------------T 67

Query: 107 AYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWD 149
               A  +    AL++   +   +  Y G ++ V  P    + 
Sbjct: 68  VAHNAVTVQREVALDVN-EWPSEEFGYFGHYYYVGGPQPMRFY 109

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLE--ASDAVGGRVR 88
          V +IGAG +GL     LH  G   V+LE    D V GR+R
Sbjct: 5  VAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIR 44

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Length = 153

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGRVRTDSVDGFL 96
          RKD  IV G  +  +    +L+ +G+   ++    +    ++     D   
Sbjct: 2  RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD 52

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          VIV+GAG AG+  A  L   G   V+LE      G  R
Sbjct: 14 VIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESR 51

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          V+V+GAGL GL+ A  L  QG   +++E    +    R
Sbjct: 8  VLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPR 45

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          VIV+GAG AGL  A  L   G   ++LE      G  R
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR 52

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          V+V+G G  GL  A  L + G   ++LE      G  R
Sbjct: 52 VVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDR 89

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 51  VIVIGAGLAGLAAATRL--HSQGRPFVLLEASDAVGG 85
           VI++GAG +GL+AA  +  +       ++E+S A GG
Sbjct: 68  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          V++ G G+ G   A  L  QG   V++E +        
Sbjct: 9  VLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAING 46

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          V+++G G  G+A A  L  +    +++E +D      R
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPR 66

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPF--VLLEASDAVGG 85
          ++ +IGAG +GL  A  L ++       L E   + GG
Sbjct: 8  KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 44/300 (14%), Positives = 95/300 (31%), Gaps = 40/300 (13%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD----------------- 93
           VIV+G G+     +  L   G+  + ++  D  GG   + ++                  
Sbjct: 14  VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 73

Query: 94  -------GFLLDRGFQIFITAYPEAQKLLDYNALNLQKF--YSGAKVYYNGQFHTV-ADP 143
                   + +D   +  +        L+  +      F   SG+ V+  G+ + V A+ 
Sbjct: 74  SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANE 133

Query: 144 FRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI 203
                  +  +       + K L  ++  +    +  Q L   +  + E+    G  +S 
Sbjct: 134 IEAISSPLMGIFEKRR--MKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNST 191

Query: 204 IDSFFRPFFGGIFFDKELETSS-----RLFDFIFKCLALGDNT--IPANGICQIPNQIAS 256
            + F          D  L+  +     R+  +       G +    P  G+ ++P   A 
Sbjct: 192 KE-FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFAR 250

Query: 257 KLPFE--SILLNTRVLSIDFD-EQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV 313
                  + +L+T +  + +  +            T K+ + +      PE  K   Q V
Sbjct: 251 LSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRV 310

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLL 77
          + +IG+G+AGL+A   L   G+   L+
Sbjct: 2  IYIIGSGIAGLSAGVALRRAGKKVTLI 28

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRP---FVLLEASDAVGG 85
           ++++GAG  GL+AA  L S  RP     ++EA  A GG
Sbjct: 82  IVIVGAGSCGLSAAYVL-STLRPDLRITIVEAGVAPGG 118

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 51  VIVIGAGLAGLAAATRL-HSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP 109
           V+V+GAG AGL+AA  +  +      ++E S + GG      + G L        +    
Sbjct: 42  VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW---LGGQLFSA-----MIVRK 93

Query: 110 EAQKLLD 116
            A   LD
Sbjct: 94  PAHLFLD 100

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 12/61 (19%), Positives = 26/61 (42%)

Query: 39  LSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLD 98
             + + L  + R++++G G+ GL  A    + G    L+E    +  R    ++  F+  
Sbjct: 136 RRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 195

Query: 99  R 99
            
Sbjct: 196 Y 196

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
            V VIGAG AGLAAA  L ++G    + +  D +GG
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	100.0
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	100.0
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	100.0
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	100.0
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	100.0
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	100.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	100.0
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	100.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	100.0
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	100.0
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	100.0
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.97
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.96
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.96
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.96
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.95
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.95
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.94
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.94
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.93
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.93
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.93
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.93
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.93
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.92
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.91
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.91
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.9
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.88
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.88
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.87
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.85
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.58
3dme_A	369	Conserved exported protein; structural genomics, P	99.58
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.49
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.43
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.4
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.39
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.38
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.38
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.36
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.35
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.31
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.27
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.27
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.27
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.27
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.25
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.24
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.23
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.22
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.21
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.2
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.14
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.12
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.12
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.12
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.11
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.11
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.08
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.07
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.06
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.06
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.06
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.05
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.04
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.03
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.02
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.02
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.99
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.99
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.99
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.99
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.98
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.97
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.96
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.96
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.96
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.95
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.95
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.95
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.94
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.94
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.94
4dna_A	463	Probable glutathione reductase; structural genomic	98.93
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.93
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.92
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.91
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.9
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.89
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.88
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.88
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.88
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.87
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.86
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.86
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.85
3atr_A	453	Conserved archaeal protein; saturating double bond	98.84
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.84
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.82
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.81
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.77
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.76
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.75
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.74
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.74
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.73
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.73
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.72
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.68
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.67
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.67
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.66
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.66
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.65
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.65
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.64
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.63
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.63
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.62
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.61
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.58
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.56
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.54
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.53
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.51
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.49
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.48
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.47
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.46
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.43
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.42
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.42
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.39
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.39
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.38
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.37
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.37
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.36
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.36
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.36
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.36
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.36
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.35
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.35
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.35
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.35
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.34
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.34
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.33
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.33
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.32
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.31
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.31
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.3
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.3
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.29
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.28
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.28
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.28
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.27
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.27
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.25
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.25
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.24
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.24
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.23
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.21
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.2
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.2
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.19
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.18
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.18
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.16
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.15
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.11
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.11
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.09
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.05
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.05
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.04
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.01
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.01
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.01
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.99
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.98
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.97
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.96
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.95
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.93
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.89
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.85
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.85
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.85
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.84
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.82
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.82
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.79
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.78
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.76
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.73
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.72
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.69
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.69
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.68
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.68
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.67
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.67
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.67
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.67
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.67
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.62
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.56
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.55
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.52
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.51
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.51
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.47
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.46
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.44
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.42
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.4
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.38
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.33
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.32
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.3
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.13
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.13
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.07
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.07
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.03
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.03
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.85
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.74
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.59
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.47
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.26
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.25
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.2
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.15
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.12
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.09
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.06
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.05
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.01
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.98
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.88
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.85
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.82
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.72
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	95.69
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.66
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.51
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.42
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.39
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.35
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.31
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.3
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.29
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.24
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.2
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.17
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.13
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.1
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.06
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.04
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.01
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.95
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.94
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.94
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.92
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.86
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.84
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.78
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.74
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.71
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.71
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.7
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.68
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.68
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.67
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.67
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.67
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.65
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.57
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.56
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.53
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.47
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.46
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.44
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.42
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.41
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.41
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.4
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.39
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.38
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.35
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.34
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.33
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.32
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.31
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.31
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.29
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.29
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.28
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	94.26
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.26
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.25
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.21
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.21
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.19
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.14
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.08
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.07
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.05
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.04
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	94.01
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.97
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.94
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.86
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.83
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.81
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.81
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.8
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.79
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.75
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.73
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.69
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.67
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.66
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.63
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	93.62
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.62
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.54
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.51
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.49
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.42
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.34
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.34
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.34
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.29
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.29
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.22
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.16
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.14
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	93.12
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.11
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.05
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	93.02
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.97
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.88
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.86
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.85
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.81
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.77
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.76
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.75
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.74
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.72
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.72
4dna_A	463	Probable glutathione reductase; structural genomic	92.71
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.7
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.7
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.69
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.68
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.66
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.65
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.62
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	92.61
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.59
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	92.55
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.49
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.44
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.42
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.39
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.38
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.35
2cul_A	232	Glucose-inhibited division protein A-related PROT	92.34
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.28
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.28
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	92.24
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.23
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.22
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.18
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.16
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.15
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.08
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.04
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.03
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.92
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.89
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.83
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	91.79
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.77
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	91.73
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.73
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	91.7
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	91.66
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	91.65
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	91.65
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.62
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.6
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.6
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.58
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.52
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	91.46
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	91.41
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	91.39
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.3
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	91.3
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.29
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.22
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	91.18
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.17
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.17
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.16
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	91.16
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	91.11
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	91.09
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	91.01
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.89
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.84
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	90.83
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	90.81
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	90.8
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	90.78
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.77
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	90.74
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.71
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.69
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	90.68
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.65
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.64
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	90.58
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	90.56
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.48
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.45
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.41
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	90.36
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	90.36
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.28
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	90.18
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.09
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	90.06
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	89.99
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	89.95
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.93
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	89.88
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	89.81
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	89.74
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	89.73
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	89.55
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	89.54
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	89.52
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	89.49
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.48
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.45
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	89.45
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.35
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	89.23
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	89.14
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	89.12
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	89.08
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	89.07
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.06
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	89.03
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	88.94
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	88.91
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	88.88
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	88.85
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	88.75
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	88.74
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	88.73
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.71
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	88.6
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	88.56
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.54
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	88.53
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	88.42
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.36
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	88.34
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	88.33
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	88.32
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	88.31
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	88.0
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	88.21
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	88.19
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	88.16

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=100.00  E-value=1.7e-38  Score=312.58  Aligned_cols=369  Identities=18%  Similarity=0.179  Sum_probs=270.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCcceeec
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNLQKFY  126 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~  126 (445)
                      +||+|||||++||+||++|+++|++|+|||+++++||+++++..+|+.+|.|++++.+  .++.+.++++++|+......
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~   80 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVR   80 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEe
Confidence            4899999999999999999999999999999999999999999999999999866543  34578889999887654322


Q ss_pred             C-CcEEEeC-----------CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH
Q 042352          127 S-GAKVYYN-----------GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL  194 (445)
Q Consensus       127 ~-~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l  194 (445)
                      . .....+.           ++...+..    ..        ......++...... +... ..    ...++.++.+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~-~~~~-~~----~~~~~~s~~~~l  142 (425)
T 3ka7_A           81 SEMTTVRVPLKKGNPDYVKGFKDISFND----FP--------SLLSYKDRMKIALL-IVST-RK----NRPSGSSLQAWI  142 (425)
T ss_dssp             CCCCEEEEESSTTCCSSTTCEEEEEGGG----GG--------GGSCHHHHHHHHHH-HHHT-TT----SCCCSSBHHHHH
T ss_pred             cCCceEEeecCCCcccccccccceehhh----hh--------hhCCHHHHHHHHHH-HHhh-hh----cCCCCCCHHHHH
Confidence            1 2222222           22222211    00        01122222211110 0000 00    123468999999


Q ss_pred             HHcCCCHHHHHHhhhhhhcccccCCccchHHH-HHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CCcEEeCceeeE
Q 042352          195 RNIGFSDSIIDSFFRPFFGGIFFDKELETSSR-LFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FESILLNTRVLS  271 (445)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~  271 (445)
                      ++. ++++.++.++.++....++.++.+.+.. .+..+......++..++.||++.++++|++.++  |++|++|++|++
T Consensus       143 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~  221 (425)
T 3ka7_A          143 KSQ-VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSK  221 (425)
T ss_dssp             HHH-CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred             HHh-cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCEEEECCceeE
Confidence            886 6778888888888877777777777664 333333334557788999999999999998885  999999999999


Q ss_pred             EEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCC------c----ccCCCCCcceEEEEEeecCCCCCCCCCe
Q 042352          272 IDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQP------V----KFQRKPARSTVCLYFSADKDEIPVQEPV  341 (445)
Q Consensus       272 I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p------~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~  341 (445)
                      |..+++++++|+++ |++++|+ .||+|+|++.+.+|++++      .    .+....+.+.+++++.++++.  +.++.
T Consensus       222 i~~~~~~~~gv~~~-g~~~~ad-~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~  297 (425)
T 3ka7_A          222 ILIENGKAAGIIAD-DRIHDAD-LVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPL--VGHTG  297 (425)
T ss_dssp             EEEETTEEEEEEET-TEEEECS-EEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCS--SCSSS
T ss_pred             EEEECCEEEEEEEC-CEEEECC-EEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCc--cCcCE
Confidence            99988776668775 7789998 799999999999999742      1    234566777889999999885  45565


Q ss_pred             EEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCC-ChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCC
Q 042352          342 LFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVM-DDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFA  420 (445)
Q Consensus       342 ~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~-~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  420 (445)
                      +.++... ..+..++++|..+|+++|+|++++.++....+.... .++.++.++++|+++||+   .+|+...+.+++.+
T Consensus       298 ~~~~~~~-~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~---~~~~~~~v~~~~~~  373 (425)
T 3ka7_A          298 VLLTPYT-RRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKEIFPG---KRYEVLLIQSYHDE  373 (425)
T ss_dssp             EEECCSS-SSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHHHSTT---CCEEEEEEEEEBTT
T ss_pred             EEECCCh-hhcceEEeccCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHHhCCC---CceEEEEEEEECCC
Confidence            5555542 346678999999999999999999887654443221 246679999999999998   35666677778888


Q ss_pred             CCCCCCCCCCCCCCcccCCCCeeeC
Q 042352          421 QPNQSPPTDLIKNPKSEFSLAVYLC  445 (445)
Q Consensus       421 ~~~~~~g~~~~~~~~~t~~~g~~~~  445 (445)
                      .|.+.+|.. .+|...||++|||||
T Consensus       374 ~P~~~~~~~-~~~~~~~p~~gL~la  397 (425)
T 3ka7_A          374 WPVNRAASG-TDPGNETPFSGLYVV  397 (425)
T ss_dssp             BCSBSSCTT-CCCCSBCSSBTEEEC
T ss_pred             ccccccccC-CCCCCCCCcCCeEEe
Confidence            888888844 568899999999998

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=1.2e-37  Score=312.96  Aligned_cols=393  Identities=16%  Similarity=0.178  Sum_probs=214.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCC------c
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL------N  121 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl------~  121 (445)
                      +++|||||||++||+||++|+++|++|+|||+++++||++++++.+|+.+|.|++++.. ...+.++++.++.      +
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~-~~~~~~l~~~~g~~~~~~~~   79 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD-PSAIEELFALAGKQLKEYVE   79 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSC-THHHHHHHHTTTCCGGGTCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecC-chhHHHHHHHhcchhhhcee
Confidence            46899999999999999999999999999999999999999999999999999998753 2344556665553      3


Q ss_pred             ceeecCCcEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh----------------hhcchHHHhc
Q 042352          122 LQKFYSGAKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV----------------LIKTDEQILT  184 (445)
Q Consensus       122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~  184 (445)
                      +.+..+...+.+ +|....+..........+..+.........++.........                .......+..
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (501)
T 4dgk_A           80 LLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAK  159 (501)
T ss_dssp             EEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTT
T ss_pred             eEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            333444433333 45555444333333332222211000001111100000000                0000000000


Q ss_pred             CC-CCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CC
Q 042352          185 SS-EVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FE  261 (445)
Q Consensus       185 ~~-~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~  261 (445)
                      .. ..++.+++.+. +.++.++.++.... ..++..+...+ ..+.++.......+.++|+||++.|+++|++.++  |+
T Consensus       160 l~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~g~~p~~~~-~~~~~~~~~~~~~G~~~p~GG~~~l~~aL~~~~~~~Gg  236 (501)
T 4dgk_A          160 LQAWRSVYSKVASY-IEDEHLRQAFSFHS-LLVGGNPFATS-SIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGG  236 (501)
T ss_dssp             SHHHHHHHHHHHTT-CCCHHHHHHHHHHH-HHHHSCC--CC-CTHHHHHHHHSCCCEEEETTHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcccHHHHHHHH-hccHHHHhhhhhhh-cccCCCcchhh-hhhhhhhhhhccCCeEEeCCCCcchHHHHHHHHHHhCC
Confidence            00 12455555543 44444554443211 11222222222 2223333444456778999999999999998875  99


Q ss_pred             cEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC-Cc------cc-CCCCCcceEEEEEeecC
Q 042352          262 SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ-PV------KF-QRKPARSTVCLYFSADK  332 (445)
Q Consensus       262 ~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~-p~------~~-~~~~~~~~~~v~~~~~~  332 (445)
                      +|++|++|++|..+++++++|+++||+++.|| +||++++++.+ .+|+++ +.      .. ......+.+++++++++
T Consensus       237 ~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad-~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~  315 (501)
T 4dgk_A          237 EVVLNARVSHMETTGNKIEAVHLEDGRRFLTQ-AVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLNH  315 (501)
T ss_dssp             EEECSCCEEEEEEETTEEEEEEETTSCEEECS-CEEECCC---------------------------CCEEEEEEEEESS
T ss_pred             ceeeecceeEEEeeCCeEEEEEecCCcEEEcC-EEEECCCHHHHHHHhccccccchhhhhhhhccccCCceeEEEecccC
Confidence            99999999999999988889999999999998 69999988865 567766 22      11 22346778999999998


Q ss_pred             CCCCCCCCeEEecCCCC--------------cceEEEEeecccCCCCCCCCceEEEEEecCCCC---C--C--CChHHHH
Q 042352          333 DEIPVQEPVLFLNGSGK--------------GIVNNMFFATNVAPLYGPLDKALISVSLIGLFA---D--V--MDDNLTA  391 (445)
Q Consensus       333 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~---~--~--~~~e~~~  391 (445)
                      ......++.+++.....              .....+.++|..||+.+|+|++.+.++....+.   +  |  .++++.+
T Consensus       316 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  395 (501)
T 4dgk_A          316 HHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWTVEGPKLRD  395 (501)
T ss_dssp             CCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCTTTSCCCHHHHHHHHHH
T ss_pred             CccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCccccccccHHHHHHHHHH
Confidence            86445566665544321              123456778999999999999988876543322   1  1  1467888


Q ss_pred             HHHHHHHhHh-CCCcC----------CCceEeeEeecCCC-CCCCCCCC-CCCCCCc-ccCCCCeeeC
Q 042352          392 EVIRELSDWF-GKSTV----------GSWRHLRTYRVRFA-QPNQSPPT-DLIKNPK-SEFSLAVYLC  445 (445)
Q Consensus       392 ~~~~~l~~~~-~~~~~----------~~~~~~~~~~~~~~-~~~~~~g~-~~~~~~~-~t~~~g~~~~  445 (445)
                      .+++.|++.+ |+.+.          .+|++..-...|.. .....+.+ ..+||.. .||+||||||
T Consensus       396 ~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~  463 (501)
T 4dgk_A          396 RIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLV  463 (501)
T ss_dssp             HHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------------CCTTEEEC
T ss_pred             HHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEE
Confidence            9999998755 76431          12322100000110 11111122 2357764 5899999998

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=100.00  E-value=7.7e-37  Score=300.20  Aligned_cols=363  Identities=18%  Similarity=0.187  Sum_probs=255.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCcc--ee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNL--QK  124 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~--~~  124 (445)
                      +||+|||||++||+||++|+++|++|+|+||++++||+++++..+|+.+|.|++.+.+  ..+.+.++++++++..  ..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~   80 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVN   80 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEE
Confidence            3899999999999999999999999999999999999999999999999999876544  3457888899888754  34


Q ss_pred             ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352          125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII  204 (445)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~  204 (445)
                      ..+...++++|....++.....        .    ...++...  ..........  ....++.++.+|+++.+++++.+
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~--------l----~~~~~~~~--~~~~~~~~~~--~~~~~~~s~~~~l~~~g~~~~~~  144 (421)
T 3nrn_A           81 SNPKGKILWEGKIFHYRESWKF--------L----SVKEKAKA--LKLLAEIRMN--KLPKEEIPADEWIKEKIGENEFL  144 (421)
T ss_dssp             CSSSCEEEETTEEEEGGGGGGG--------C----C----------CCHHHHHTT--CCCCCCSBHHHHHHHHTCCCHHH
T ss_pred             CCCCeEEEECCEEEEcCCchhh--------C----CHhHHHHH--HHHHHHHHhc--cCCCCCCCHHHHHHHhcCCcHHH
Confidence            4445566677777665432211        0    11111100  0000000000  11223579999999877888888


Q ss_pred             HHhhhhhhcccccCCccchHHH-HHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCe
Q 042352          205 DSFFRPFFGGIFFDKELETSSR-LFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPN  281 (445)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~  281 (445)
                      +.++.++....++.++.+.++. .+..+......++.++|.||++.++++|++.++  |++|++|++|++|+.++++ + 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-v-  222 (421)
T 3nrn_A          145 LSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKK-V-  222 (421)
T ss_dssp             HHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTE-E-
T ss_pred             HHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCE-E-
Confidence            8888898888888777777664 333333334456788999999999999998774  8999999999999988766 4 


Q ss_pred             EEeCCCceEEeccEEEEcCChhHHhhhcCC---Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEE
Q 042352          282 VRLANGETLKSEIGVILAVEEPEADKLLRQ---PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNN  354 (445)
Q Consensus       282 V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~---p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (445)
                      | +.+|++++|+ .||+|++++.+.+|++.   |.    .+.+..+.+.++++++++++.  ...+.+++..+..  +..
T Consensus       223 V-~~~g~~~~ad-~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~~~~~~~~~--~~~  296 (421)
T 3nrn_A          223 Y-TRDNEEYSFD-VAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEP--RIGNTIVFTPGLM--ING  296 (421)
T ss_dssp             E-ETTCCEEECS-EEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSC--SSCSSEEECTTSS--SCE
T ss_pred             E-EeCCcEEEeC-EEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCc--ccCCeEEEcCCcc--eee
Confidence            5 4577789998 79999999999999973   22    234566778999999999884  4455555555444  778


Q ss_pred             EEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCC
Q 042352          355 MFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNP  434 (445)
Q Consensus       355 ~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  434 (445)
                      ++++|+.+|+++|+|++++.++....  ..+.++..+.++++|++++|.   .+..++.+|+.+.+.+...+|.+ ++  
T Consensus       297 i~~~s~~~p~~ap~G~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~p~---~~~~~~~~~~~~~p~~~~~~~~~-~~--  368 (421)
T 3nrn_A          297 FNEPSALDKSLAREGYTLIMAHMALK--NGNVKKAIEKGWEELLEIFPE---GEPLLAQVYRDGNPVNRTRAGLH-IE--  368 (421)
T ss_dssp             EECGGGTCGGGSCTTEEEEEEEEECT--TCCHHHHHHHHHHHHHHHCTT---CEEEEEEEC-------------C-CC--
T ss_pred             EeccCCCCCCcCCCCceEEEEEEeec--cccHHHHHHHHHHHHHHHcCC---CeEEEeeeccCCCCcccccCCCC-CC--
Confidence            89999999999999999988765321  223356699999999999991   23333455555444444455554 22  


Q ss_pred             cccCCCCeeeC
Q 042352          435 KSEFSLAVYLC  445 (445)
Q Consensus       435 ~~t~~~g~~~~  445 (445)
                       .|+ ||||+|
T Consensus       369 -~~~-~gl~la  377 (421)
T 3nrn_A          369 -WPL-NEVLVV  377 (421)
T ss_dssp             -CCC-SSEEEC
T ss_pred             -CCC-CcEEEE
Confidence             788 999998

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=100.00  E-value=1.9e-36  Score=302.50  Aligned_cols=381  Identities=19%  Similarity=0.229  Sum_probs=270.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF  125 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~  125 (445)
                      ...+||+|||||++||+||+.|+++|++|+|+|+++++||++++.+.+|+.+|.|++++...++.+.++++++|+.....
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~   93 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIR   93 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCcceee
Confidence            34689999999999999999999999999999999999999999999999999999999877888999999999863222


Q ss_pred             -----cCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352          126 -----YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS  200 (445)
Q Consensus       126 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  200 (445)
                           .....++.+|+...++.....   .   +......+.++.... .   .......  ...++.++.+|+++ .++
T Consensus        94 ~~~~~~~~~~~~~~g~~~~~p~~~~~---~---~~~~~~~~~~~~~~~-~---~~~~~~~--~~~~~~s~~~~l~~-~~~  160 (478)
T 2ivd_A           94 AADPAAKRRYVYTRGRLRSVPASPPA---F---LASDILPLGARLRVA-G---ELFSRRA--PEGVDESLAAFGRR-HLG  160 (478)
T ss_dssp             CSCSSCCCEEEEETTEEEECCCSHHH---H---HTCSSSCHHHHHHHH-G---GGGCCCC--CTTCCCBHHHHHHH-HTC
T ss_pred             ecCccccceEEEECCEEEECCCCHHH---h---ccCCCCCHHHHHHHh-h---hhhcCCC--CCCCCCCHHHHHHH-hhC
Confidence                 123456677876665433211   1   111222333332211 1   1111100  12467899999987 488


Q ss_pred             HHHHHHhhhhhhcccccCCccchHHHHHH-HH--------------HHH----------h-hc----CCCccccCccccH
Q 042352          201 DSIIDSFFRPFFGGIFFDKELETSSRLFD-FI--------------FKC----------L-AL----GDNTIPANGICQI  250 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~----------~-~~----g~~~~~~gG~~~l  250 (445)
                      ++..+.++.+++...|+.++.+.+..... .+              ...          . ..    ++.+++.||++.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l  240 (478)
T 2ivd_A          161 HRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVL  240 (478)
T ss_dssp             HHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHH
T ss_pred             HHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHH
Confidence            99999999999988888877776543211 00              000          0 11    5678899999999


Q ss_pred             HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEe---CCCceEEeccEEEEcCChhHHhhhcCC-Cc----ccCCCCCcc
Q 042352          251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRL---ANGETLKSEIGVILAVEEPEADKLLRQ-PV----KFQRKPARS  322 (445)
Q Consensus       251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~---~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~----~~~~~~~~~  322 (445)
                      +++|++.+ |++|++|++|++|+.++++ +.|++   .+|++++|+ +||+|+|++.+.+|+++ |.    .+....+.+
T Consensus       241 ~~~l~~~l-g~~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~ad-~vV~a~~~~~~~~ll~~l~~~~~~~l~~~~~~~  317 (478)
T 2ivd_A          241 IDALAASL-GDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVA-QVVLAAPAHATAKLLRPLDDALAALVAGIAYAP  317 (478)
T ss_dssp             HHHHHHHH-GGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECS-EEEECSCHHHHHHHHTTTCHHHHHHHHTCCBCC
T ss_pred             HHHHHHHh-hhhEEcCCEEEEEEecCCe-EEEEEeecCCCceEEcC-EEEECCCHHHHHHHhhccCHHHHHHHhcCCCCc
Confidence            99999998 7899999999999988766 88888   778789998 79999999999999876 33    345677889


Q ss_pred             eEEEEEeecCCCCCCCCCe-EEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHH
Q 042352          323 TVCLYFSADKDEIPVQEPV-LFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIREL  397 (445)
Q Consensus       323 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l  397 (445)
                      ..++++.+++++|+....+ +.++......+..+.+++..+|..+|+|..++.+++.+.    +.+.+++++.+.++++|
T Consensus       318 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  397 (478)
T 2ivd_A          318 IAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREEL  397 (478)
T ss_dssp             EEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHH
T ss_pred             EEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHHH
Confidence            9999999998875542222 223221222355678888777777788888887776554    33568899999999999


Q ss_pred             HhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352          398 SDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC  445 (445)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~  445 (445)
                      +++||......+  ...+++.++.+...+|....    ++...+ ++|||+|
T Consensus       398 ~~~~~~~~~p~~--~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~a  446 (478)
T 2ivd_A          398 KALAGVTARPSF--TRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLI  446 (478)
T ss_dssp             HHHHCCCSCCSE--EEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEEC
T ss_pred             HHHhCCCCCCcE--EEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEE
Confidence            999997543333  34567777777777775311    112222 6899987

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=100.00  E-value=3.3e-37  Score=307.25  Aligned_cols=387  Identities=18%  Similarity=0.236  Sum_probs=272.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC------CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG------RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN  121 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G------~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~  121 (445)
                      ++||+|||||++||+||++|+++|      ++|+|||+++++||++.+...+|+.+|.|++++...++.+.++++++|+.
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~   84 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLE   84 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHcCCc
Confidence            479999999999999999999999      99999999999999999999999999999999888889999999999987


Q ss_pred             ceee---cCCcEEEeCCeeEeccCCc--cchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH
Q 042352          122 LQKF---YSGAKVYYNGQFHTVADPF--RHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN  196 (445)
Q Consensus       122 ~~~~---~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~  196 (445)
                      ....   .....++.+++...++...  ..+......+........+++......+    ..  .....++.++.+|+++
T Consensus        85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~s~~~~~~~  158 (470)
T 3i6d_A           85 HLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFI----LP--ASKTKDDQSLGEFFRR  158 (470)
T ss_dssp             TTEEECCCCCEEEECSSCEEECCC---------------------CCSHHHHHHHH----SC--CCSSSSCCBHHHHHHH
T ss_pred             ceeecCCCCccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHHHHHhcCcc----cC--CCCCCCCcCHHHHHHH
Confidence            5432   2334556677766654321  0111110000011111111111111100    00  0123457899999987


Q ss_pred             cCCCHHHHHHhhhhhhcccccCCccchHHHHHHH-----------HHHH---------------hhcCCCccccCccccH
Q 042352          197 IGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDF-----------IFKC---------------LALGDNTIPANGICQI  250 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---------------~~~g~~~~~~gG~~~l  250 (445)
                       .++.+..+.++.+++.++|..+..+.+......           +...               ...+..+++.+|++.+
T Consensus       159 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l  237 (470)
T 3i6d_A          159 -RVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTL  237 (470)
T ss_dssp             -HSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-------------------------------EEEETTCTHHH
T ss_pred             -hcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHH
Confidence             478888999999999999998877766532110           0000               0023466889999999


Q ss_pred             HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEE
Q 042352          251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLY  327 (445)
Q Consensus       251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~  327 (445)
                      +++|++.++.++|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|++.+.+|+.+++   .+..+.+.++.+++
T Consensus       238 ~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad-~vi~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~  315 (470)
T 3i6d_A          238 VEEIEKQLKLTKVYKGTKVTKLSHSGSC-YSLELDNGVTLDAD-SVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVA  315 (470)
T ss_dssp             HHHHHHTCCSEEEECSCCEEEEEECSSS-EEEEESSSCEEEES-EEEECSCHHHHHHHTTTSTTHHHHHTCEEEEEEEEE
T ss_pred             HHHHHHhcCCCEEEeCCceEEEEEcCCe-EEEEECCCCEEECC-EEEECCCHHHHHHHcCCchhhHHHhcCCCCceEEEE
Confidence            9999999854799999999999988765 78999999889998 7999999999999988754   45667888999999


Q ss_pred             EeecCCCCCCCC--CeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHh
Q 042352          328 FSADKDEIPVQE--PVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWF  401 (445)
Q Consensus       328 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~  401 (445)
                      +.|++++|+...  ..+.++......+..++|+|...+...|+|..++.+++.+.    +.+++++++++.++++|+++|
T Consensus       316 l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  395 (470)
T 3i6d_A          316 LGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVM  395 (470)
T ss_dssp             EEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGS
T ss_pred             EEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHh
Confidence            999999864321  22233433333456778888878888888888888776543    346789999999999999999


Q ss_pred             CCCcCCCceEeeEeecCCCCCCCCCCCCC----CCCCcccCCCCeeeC
Q 042352          402 GKSTVGSWRHLRTYRVRFAQPNQSPPTDL----IKNPKSEFSLAVYLC  445 (445)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~t~~~g~~~~  445 (445)
                      |.....  .....++++++.|...+|...    .++...++.+|||+|
T Consensus       396 g~~~~p--~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~a  441 (470)
T 3i6d_A          396 NINGEP--EMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMT  441 (470)
T ss_dssp             CCCSCC--SEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEEC
T ss_pred             CCCCCc--eEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            875322  234556666777777777531    233344568899987

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=100.00  E-value=3.2e-36  Score=302.79  Aligned_cols=390  Identities=18%  Similarity=0.193  Sum_probs=267.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      |.+.+||+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+|.|++++...++.+.++++++|+....
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~   89 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQ   89 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCcccc
Confidence            34568999999999999999999999999999999999999999999999999999999987788899999999986432


Q ss_pred             ec----CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352          125 FY----SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS  200 (445)
Q Consensus       125 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  200 (445)
                      ..    ....++.+|+...++....   ...   ........+++......+........ ....++.++.+|+++. ++
T Consensus        90 ~~~~~~~~~~~~~~g~~~~~p~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~~-~~  161 (504)
T 1sez_A           90 QFPLSQNKRYIARNGTPVLLPSNPI---DLI---KSNFLSTGSKLQMLLEPILWKNKKLS-QVSDSHESVSGFFQRH-FG  161 (504)
T ss_dssp             ECCSSCCCEEEESSSSEEECCSSHH---HHH---HSSSSCHHHHHHHHTHHHHC-----------CCCBHHHHHHHH-HC
T ss_pred             eeccCCCceEEEECCeEEECCCCHH---HHh---ccccCCHHHHHHHhHhhhccCccccc-ccCCCCccHHHHHHHH-cC
Confidence            21    1233455666665543211   111   11222223333222111111000000 0123468999999875 88


Q ss_pred             HHHHHHhhhhhhcccccCCccchHHHHH-----HHH-----------HHHh------------------hcCCCccccCc
Q 042352          201 DSIIDSFFRPFFGGIFFDKELETSSRLF-----DFI-----------FKCL------------------ALGDNTIPANG  246 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~------------------~~g~~~~~~gG  246 (445)
                      ++.++.++.+++.+.|+.++.+.+....     ...           ...+                  ...+.+++.||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG  241 (504)
T 1sez_A          162 KEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGG  241 (504)
T ss_dssp             HHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTC
T ss_pred             HHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcH
Confidence            9999999999999989888777654321     110           0000                  01246789999


Q ss_pred             cccHHHHHHhcCCCCcEEeCceeeEEEecCCCc-----CeEEeC--CC---ceEEeccEEEEcCChhHHhhhcCC----C
Q 042352          247 ICQIPNQIASKLPFESILLNTRVLSIDFDEQNM-----PNVRLA--NG---ETLKSEIGVILAVEEPEADKLLRQ----P  312 (445)
Q Consensus       247 ~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~-----~~V~~~--~g---~~i~a~~~VV~a~~~~~~~~ll~~----p  312 (445)
                      ++.|+++|++.++.++|++|++|++|..++++.     +.|++.  +|   ++++|| +||+|+|++.+.+++.+    |
T Consensus       242 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad-~VI~a~p~~~l~~ll~~~~~~~  320 (504)
T 1sez_A          242 MQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFD-AVIMTAPLCDVKSMKIAKRGNP  320 (504)
T ss_dssp             THHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEES-EEEECSCHHHHHTSEEESSSSB
T ss_pred             HHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECC-EEEECCCHHHHHHHhhcccCCc
Confidence            999999999998327999999999999887663     566664  45   578898 79999999999998831    1


Q ss_pred             --c-ccCCCCCcceEEEEEeecCCCCCC--CCCeEEecCCCC---cceEEEEeecccCCCCCCCCceEEEEEecCC----
Q 042352          313 --V-KFQRKPARSTVCLYFSADKDEIPV--QEPVLFLNGSGK---GIVNNMFFATNVAPLYGPLDKALISVSLIGL----  380 (445)
Q Consensus       313 --~-~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----  380 (445)
                        . .+....+.+..++++.|++++|+.  ....+.++....   ..+.++++.|..+|..+|+|.+++.++..+.    
T Consensus       321 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~  400 (504)
T 1sez_A          321 FLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRE  400 (504)
T ss_dssp             CCCTTSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGG
T ss_pred             ccHHHHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeCCCCccc
Confidence              1 345667778999999999887542  223334433221   1345677778888888898988887776543    


Q ss_pred             CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCC---CCcccCCCCeeeC
Q 042352          381 FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIK---NPKSEFSLAVYLC  445 (445)
Q Consensus       381 ~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~t~~~g~~~~  445 (445)
                      +..++++++++.++++|++++|......+  ....++.++.|...+|.....   +...++++|||+|
T Consensus       401 ~~~~~~ee~~~~v~~~L~~~~g~~~~p~~--~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~a  466 (504)
T 1sez_A          401 LAKASRTELKEIVTSDLKQLLGAEGEPTY--VNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYA  466 (504)
T ss_dssp             GTTCCHHHHHHHHHHHHHHHHCBCSCCSS--EEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEEC
T ss_pred             ccCCCHHHHHHHHHHHHHHHhCCCCCCeE--EEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEE
Confidence            45678999999999999999997432222  445566666777777753211   1234678999997

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=100.00  E-value=8.4e-36  Score=297.48  Aligned_cols=388  Identities=18%  Similarity=0.238  Sum_probs=277.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      .++||+|||||++||+||++|+++|  ++|+|+|+++++||++.+...+|+.+|.|++++...++.+.++++++|++...
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~~   82 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEKL   82 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGGE
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcceE
Confidence            3579999999999999999999999  99999999999999999999999999999999888888999999999987544


Q ss_pred             e---cCCcEEEeCCeeEeccCCc--cchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352          125 F---YSGAKVYYNGQFHTVADPF--RHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF  199 (445)
Q Consensus       125 ~---~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~  199 (445)
                      .   .....++.+|+...++...  ..+......+........++.  ....+.... ........++.++.+|+++ .+
T Consensus        83 ~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~s~~~~l~~-~~  158 (475)
T 3lov_A           83 VRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQ--EVADLLLHP-SDSLRIPEQDIPLGEYLRP-RL  158 (475)
T ss_dssp             EECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHHHHH--HHHHHHHSC-CTTCCCCSSCCBHHHHHHH-HH
T ss_pred             eecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChhHHH--HhhCcccCC-cccccCCCCCcCHHHHHHH-Hh
Confidence            3   2335566788877765432  111111111222333333333  111111100 0000113457899999987 47


Q ss_pred             CHHHHHHhhhhhhcccccCCccchHHH-----HHHH------HHHH-h-----------------hcCCCccccCccccH
Q 042352          200 SDSIIDSFFRPFFGGIFFDKELETSSR-----LFDF------IFKC-L-----------------ALGDNTIPANGICQI  250 (445)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~-~-----------------~~g~~~~~~gG~~~l  250 (445)
                      +.+..+.++.+++.+.|+.+..+.+..     +...      +... .                 ..+..+++.+|++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l  238 (475)
T 3lov_A          159 GDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESL  238 (475)
T ss_dssp             CHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHH
T ss_pred             CHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHH
Confidence            789999999999999999887766532     1110      0000 0                 123567899999999


Q ss_pred             HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc--ccCCCCCcceEEEEE
Q 042352          251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV--KFQRKPARSTVCLYF  328 (445)
Q Consensus       251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~--~~~~~~~~~~~~v~~  328 (445)
                      +++|++.++.++|++|++|++|+.++++ +.|++.+| +++|+ +||+|+|++.+.+|++++.  .+..+.+.++.++++
T Consensus       239 ~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~ad-~vV~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~v~l  315 (475)
T 3lov_A          239 IERLEEVLERSEIRLETPLLAISREDGR-YRLKTDHG-PEYAD-YVLLTIPHPQVVQLLPDAHLPELEQLTTHSTATVTM  315 (475)
T ss_dssp             HHHHHHHCSSCEEESSCCCCEEEEETTE-EEEECTTC-CEEES-EEEECSCHHHHHHHCTTSCCHHHHTCCEEEEEEEEE
T ss_pred             HHHHHhhccCCEEEcCCeeeEEEEeCCE-EEEEECCC-eEECC-EEEECCCHHHHHHHcCccCHHHHhcCCCCeEEEEEE
Confidence            9999999854799999999999988765 77888899 79998 7999999999999998753  345678889999999


Q ss_pred             eecCCCCCCCC-C-eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhC
Q 042352          329 SADKDEIPVQE-P-VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFG  402 (445)
Q Consensus       329 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~  402 (445)
                      .|++++ ..+. . .+.++......+..++|.|...+...|+ ..++.+++.+.    +.+++++++++.++++|+++||
T Consensus       316 ~~~~~~-~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g  393 (475)
T 3lov_A          316 IFDQQQ-SLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD-HTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICG  393 (475)
T ss_dssp             EEECCS-SCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHS
T ss_pred             EECCcC-CCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC-cEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhC
Confidence            999886 2221 2 2233333233466788888888888887 66676665433    3467899999999999999999


Q ss_pred             CCcCCCceEeeEeecCCCCCCCCCCCC----CCCCCcccCCCCeeeC
Q 042352          403 KSTVGSWRHLRTYRVRFAQPNQSPPTD----LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~t~~~g~~~~  445 (445)
                      ......+  ..++++.++.|...+|..    ..++...++++|||+|
T Consensus       394 ~~~~p~~--~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~a  438 (475)
T 3lov_A          394 RTLEPKQ--VIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLA  438 (475)
T ss_dssp             SCCCCSE--EEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEEC
T ss_pred             CCCCCeE--EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Confidence            7543333  455667777787888763    2234444668999997

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=100.00  E-value=4.5e-35  Score=295.09  Aligned_cols=380  Identities=16%  Similarity=0.170  Sum_probs=262.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcceeee-ccCCeeecccccchhccChhHHHhhcccCC---
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFITAYPEAQKLLDYNAL---  120 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl---  120 (445)
                      ...+||+|||||++||+||++|+++ |++|+|||+++++||+++|. ..+|+.+|.|+|+|+..++.+.+++++++.   
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~~~~~~   87 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKED   87 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHHSCSGG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHhCCccc
Confidence            3468999999999999999999984 99999999999999999985 678999999999998888999999988764   


Q ss_pred             cceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352          121 NLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS  200 (445)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  200 (445)
                      ++....+...++++|++..++-  ...+...      ......+....+.....    ..........++.+|+.+ .++
T Consensus        88 ~~~~~~~~~~i~~~g~~~~~p~--~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~-~~g  154 (513)
T 4gde_A           88 DWYTHQRISYVRCQGQWVPYPF--QNNISML------PKEEQVKCIDGMIDAAL----EARVANTKPKTFDEWIVR-MMG  154 (513)
T ss_dssp             GEEEEECCEEEEETTEEEESSG--GGGGGGS------CHHHHHHHHHHHHHHHH----HHHTCCSCCCSHHHHHHH-HHH
T ss_pred             eeEEecCceEEEECCeEeecch--hhhhhhc------chhhHHHHHHHHHHHHH----hhhcccccccCHHHHHHH-hhh
Confidence            3445566678888998876642  1111100      00000111111111000    011123446789999976 477


Q ss_pred             HHHHHHhhhhhhcccccCCccchHHHHH----------HHHHHHh---hcC-------CCccccCccccHHHHHHhcCC-
Q 042352          201 DSIIDSFFRPFFGGIFFDKELETSSRLF----------DFIFKCL---ALG-------DNTIPANGICQIPNQIASKLP-  259 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~---~~g-------~~~~~~gG~~~l~~~l~~~l~-  259 (445)
                      +.+.+.++.++..++|+.+..+.+..+.          .......   ..+       ..+.++||++.++++|++.++ 
T Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~  234 (513)
T 4gde_A          155 TGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPK  234 (513)
T ss_dssp             HHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHTSCG
T ss_pred             hhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHHHHHh
Confidence            8888999999999998887766543211          1111111   111       123458999999999999997 


Q ss_pred             -CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCC
Q 042352          260 -FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEI  335 (445)
Q Consensus       260 -g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~  335 (445)
                       |++|++|++|++|..+++   .|++.+|+++.|+ +||+|+|+..+.+++.++.   ....+.+.+...+++.++....
T Consensus       235 ~g~~i~~~~~V~~I~~~~~---~v~~~~G~~~~ad-~vI~t~P~~~l~~~l~~~~~~~~~~~l~y~~~~~v~l~~~~~~~  310 (513)
T 4gde_A          235 EKTRFGEKGKVTKVNANNK---TVTLQDGTTIGYK-KLVSTMAVDFLAEAMNDQELVGLTKQLFYSSTHVIGVGVRGSRP  310 (513)
T ss_dssp             GGEEESGGGCEEEEETTTT---EEEETTSCEEEEE-EEEECSCHHHHHHHTTCHHHHHHHTTCCEEEEEEEEEEEESSCC
T ss_pred             cCeeeecceEEEEEEccCC---EEEEcCCCEEECC-EEEECCCHHHHHHhcCchhhHhhhhcccCCceEEEEEEEecccc
Confidence             899999999999998763   5778999999998 7999999999999998743   4567889999999999876642


Q ss_pred             C--CCCCeEEecCCCCcceEEEEeecccCCCCCCCCceEE---------------------EEEec----CCCCCCCChH
Q 042352          336 P--VQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALI---------------------SVSLI----GLFADVMDDN  388 (445)
Q Consensus       336 ~--~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l---------------------~~~~~----~~~~~~~~~e  388 (445)
                      .  .+.+++++++. .-.+.++..+++..|...|++...+                     ..++.    .....+++++
T Consensus       311 ~~~~~~~~~y~~~~-~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~  389 (513)
T 4gde_A          311 ERIGDKCWLYFPED-NCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQET  389 (513)
T ss_dssp             TTTTTCCEEECCST-TCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTT
T ss_pred             ccccccceeeccCC-CCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccchhccCCCHHH
Confidence            1  23344444433 2234455555555555555443322                     22211    1244678999


Q ss_pred             HHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352          389 LTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC  445 (445)
Q Consensus       389 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~  445 (445)
                      +++.++++|.++.+...........+.|+++++|.+.+|....    ++.-.  -+|||+|
T Consensus       390 l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~--~~~l~~~  448 (513)
T 4gde_A          390 ILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQ--DKDIWSR  448 (513)
T ss_dssp             HHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHH--HTTEEEC
T ss_pred             HHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHh--hcCcEEe
Confidence            9999999999998876555566667788889999998887421    33223  2578875

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=100.00  E-value=1.9e-34  Score=290.70  Aligned_cols=384  Identities=18%  Similarity=0.147  Sum_probs=253.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC-CeeecccccchhccChhHHHhhcccCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD-GFLLDRGFQIFITAYPEAQKLLDYNALNLQKF  125 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~  125 (445)
                      +++||+|||||++||+||+.|+++|++|+|+|+++++||++.+.+.+ |+.+|.|++++.+.++.+.++++++|++....
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~   82 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKV   82 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcceec
Confidence            45799999999999999999999999999999999999999999885 99999999998877788899999999876543


Q ss_pred             cCC--cEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhc---c--hHHHhcCCCCcHHHHHHHcC
Q 042352          126 YSG--AKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIK---T--DEQILTSSEVPIIELLRNIG  198 (445)
Q Consensus       126 ~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~s~~~~l~~~~  198 (445)
                      ...  ..++.+|+...++..++.........      ...++...+.++.....   .  .......++.++.+|+++..
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~  156 (520)
T 1s3e_A           83 NEVERLIHHVKGKSYPFRGPFPPVWNPITYL------DHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLC  156 (520)
T ss_dssp             CCSSEEEEEETTEEEEECSSSCCCCSHHHHH------HHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHC
T ss_pred             ccCCceEEEECCEEEEecCCCCCCCCHHHHH------HHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhC
Confidence            222  23345666555433222100000000      00011111111111000   0  00011235689999999875


Q ss_pred             CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHH-------h---hcCCCccccCccccHHHHHHhcCCCCcEEeCce
Q 042352          199 FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC-------L---ALGDNTIPANGICQIPNQIASKLPFESILLNTR  268 (445)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~  268 (445)
                      .+ +.++.++.+++...++.++.+.+...+...+..       +   ..+..+++.||++.++++|++.+ |++|++|++
T Consensus       157 ~~-~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l-g~~i~~~~~  234 (520)
T 1s3e_A          157 WT-ESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL-GDRVKLERP  234 (520)
T ss_dssp             SS-HHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH-GGGEESSCC
T ss_pred             CC-HHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHc-CCcEEcCCe
Confidence            54 456888888888888888777766544222211       1   12345789999999999999988 789999999


Q ss_pred             eeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCC-
Q 042352          269 VLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEP-  340 (445)
Q Consensus       269 V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~-  340 (445)
                      |++|+.++++ +.|++.+|+++.|| +||+|+|+..+.+++.+|.       .++...+.+..++++.|++++|+.... 
T Consensus       235 V~~i~~~~~~-v~v~~~~g~~~~ad-~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~  312 (520)
T 1s3e_A          235 VIYIDQTREN-VLVETLNHEMYEAK-YVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYC  312 (520)
T ss_dssp             EEEEECSSSS-EEEEETTSCEEEES-EEEECSCGGGGGGSEEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGGGTEE
T ss_pred             eEEEEECCCe-EEEEECCCeEEEeC-EEEECCCHHHHcceeeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcccCCCCC
Confidence            9999988765 56889999889998 7999999999988875432       356677888999999999998643221 


Q ss_pred             eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecC----CCCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEee
Q 042352          341 VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG----LFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYR  416 (445)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~----~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~  416 (445)
                      ...+......++. .++++.    ..+.+..++..++.+    .+.+++++++++.++++|+++||........+...++
T Consensus       313 g~~~~~~~~~~~~-~~~d~~----~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~  387 (520)
T 1s3e_A          313 GTMIIDGEEAPVA-YTLDDT----KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKN  387 (520)
T ss_dssp             EEEEECSTTCSCS-EEEECC----CTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEE
T ss_pred             ceeeccCCCCceE-EEeeCC----CCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccccCCccEEEEEe
Confidence            1111111122222 233322    122234566655544    2567789999999999999999874221222233333


Q ss_pred             c-------CCCCCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352          417 V-------RFAQPNQSPPTD-LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       417 ~-------~~~~~~~~~g~~-~~~~~~~t~~~g~~~~  445 (445)
                      +       |...+...||.. ..++...+|++|||+|
T Consensus       388 W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fA  424 (520)
T 1s3e_A          388 WCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFA  424 (520)
T ss_dssp             GGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEEC
T ss_pred             eCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEe
Confidence            3       222223455542 2355667889999997

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=296.22  Aligned_cols=380  Identities=17%  Similarity=0.199  Sum_probs=267.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCCcceeeecc-CCeeecccccchhcc---ChhHHHhhcccCCcc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITA---YPEAQKLLDYNALNL  122 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~---~~~~~~l~~~lgl~~  122 (445)
                      +||+|||||++||+||++|+++|+  +|+|||+++++||++++... +|+.+|.|++++...   ++.+.++++++|++.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~   82 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDS   82 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGG
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcc
Confidence            699999999999999999999999  99999999999999999765 589999999987553   567889999999873


Q ss_pred             eee--c------CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH
Q 042352          123 QKF--Y------SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL  194 (445)
Q Consensus       123 ~~~--~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l  194 (445)
                      ...  .      ....++.+|+...++............+..+.   ....   +.   .....   ....++.++.+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~---~~~~---~~---~~~~~---~~~~~~~s~~~~~  150 (477)
T 3nks_A           83 EVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPL---FWAG---LR---ELTKP---RGKEPDETVHSFA  150 (477)
T ss_dssp             GEEEECTTSHHHHCEEEEETTEEEECCCSSCC---CCTTSCSCS---SHHH---HT---TTTSC---CCCSSCCBHHHHH
T ss_pred             eeeecCCCCchhcceEEEECCEEEECCCChhhcccccchhhhHH---HHHH---HH---hhhcC---CCCCCCcCHHHHH
Confidence            322  1      12456678888877654332221111111100   0000   00   11110   1123568999999


Q ss_pred             HHcCCCHHHHHHhhhhhhcccccCCccchHHHHH-HHHHH-----------H-------------------hhcCCCccc
Q 042352          195 RNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLF-DFIFK-----------C-------------------LALGDNTIP  243 (445)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~-------------------~~~g~~~~~  243 (445)
                      ++ .++.++.+.++.+++.++|..+..+.+.... ..+..           .                   ......+++
T Consensus       151 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
T 3nks_A          151 QR-RLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSL  229 (477)
T ss_dssp             HH-HHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEE
T ss_pred             HH-hhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEE
Confidence            87 5788989999999999999988887765432 11111           0                   012246789


Q ss_pred             cCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC--Cc---ccC
Q 042352          244 ANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ--PV---KFQ  316 (445)
Q Consensus       244 ~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~--p~---~~~  316 (445)
                      .||++.++++|++.++  |++|++|++|++|+.++++.+.|++ +|.++.|+ +||+|+|++.+.+|+++  |+   .+.
T Consensus       230 ~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad-~vv~a~p~~~~~~ll~~~~~~~~~~l~  307 (477)
T 3nks_A          230 RGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEAD-HVISAIPASVLSELLPAEAAPLARALS  307 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEES-EEEECSCHHHHHHHSCGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcC-EEEECCCHHHHHHhccccCHHHHHHHh
Confidence            9999999999999885  8999999999999988765567776 45579998 79999999999999876  22   355


Q ss_pred             CCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCCCCC-CCCceEEEEEecCCC--------CCCCCh
Q 042352          317 RKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYG-PLDKALISVSLIGLF--------ADVMDD  387 (445)
Q Consensus       317 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~-p~g~~~l~~~~~~~~--------~~~~~~  387 (445)
                      .+.+.++.++++.|++++|+.....+.++......+..+++.|...|... |+|..++.+++.+.+        .+++++
T Consensus       308 ~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~  387 (477)
T 3nks_A          308 AITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQE  387 (477)
T ss_dssp             TCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHH
T ss_pred             cCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHH
Confidence            67888999999999998865433333333332344667888888777654 447888887765432        245899


Q ss_pred             HHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352          388 NLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC  445 (445)
Q Consensus       388 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~  445 (445)
                      ++++.++++|+++||.....  ....++++.++.|.+.+|....    +....+..+|||+|
T Consensus       388 ~~~~~~~~~L~~~~g~~~~~--~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~  447 (477)
T 3nks_A          388 LFQQRAQEAAATQLGLKEMP--SHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLA  447 (477)
T ss_dssp             HHHHHHHHHHHHHHCCCSCC--SEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEEC
T ss_pred             HHHHHHHHHHHHHhCCCCCC--cEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999864333  2345677778888888886532    11111124678887

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=100.00  E-value=2.1e-32  Score=274.29  Aligned_cols=374  Identities=14%  Similarity=0.046  Sum_probs=243.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCC--cceee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL--NLQKF  125 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl--~~~~~  125 (445)
                      .+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.+.+|+.+|.|++++.+.++.+.++++++|+  ++...
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~~~  118 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPS  118 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEEES
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcceeecc
Confidence            3899999999999999999999999999999999999999999999999999999998888899999999998  44443


Q ss_pred             c---C-C-cEEEeC--CeeEeccCCccchHHHHHhhcCCccchHHHHHH----hhhhhhh-hhcc--hHHHhcCCCCcHH
Q 042352          126 Y---S-G-AKVYYN--GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLI----GLTRIRV-LIKT--DEQILTSSEVPII  191 (445)
Q Consensus       126 ~---~-~-~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~--~~~~~~~~~~s~~  191 (445)
                      .   . . ..++.+  +....++.  .........       ...++..    ....+.. ....  ...+..+++.|+.
T Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  189 (495)
T 2vvm_A          119 FNFSRGVNHFQLRTNPTTSTYMTH--EAEDELLRS-------ALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYS  189 (495)
T ss_dssp             CCCSSSCCEEEEESSTTCCEEECH--HHHHHHHHH-------HHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHH
T ss_pred             cccCCCceEEEecCCCCceeecCH--HHHHHHHHH-------HHHHHHccchhhhhhcCCCCCCcccCcchhhhhhhhHH
Confidence            2   1 1 222333  34333321  000111000       0001100    0000000 0000  0011234578999


Q ss_pred             HHHHHcC--CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHH--------hhcCCCccccCccccHHHHHHhcCC--
Q 042352          192 ELLRNIG--FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC--------LALGDNTIPANGICQIPNQIASKLP--  259 (445)
Q Consensus       192 ~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~gG~~~l~~~l~~~l~--  259 (445)
                      +|+++.+  +++. .+.++.+++...++.+..+.+.......+..        ....+.+++.||++.++++|.+.++  
T Consensus       190 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~  268 (495)
T 2vvm_A          190 ERIDQIRDELSLN-ERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGT  268 (495)
T ss_dssp             HHHHHHGGGCCHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhccCCHH-HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHHHHhhhc
Confidence            9999876  6655 5678888888888777776665433222111        1122466789999999999999874  


Q ss_pred             C-CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeec
Q 042352          260 F-ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSAD  331 (445)
Q Consensus       260 g-~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~  331 (445)
                      | ++|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|+..+.+++.+|.       +++...+.+..++++.|+
T Consensus       269 g~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad-~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~  346 (495)
T 2vvm_A          269 GRLGYVFGCPVRSVVNERDA-ARVTARDGREFVAK-RVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKVHAEVD  346 (495)
T ss_dssp             TCEEEESSCCEEEEEECSSS-EEEEETTCCEEEEE-EEEECCCGGGGGGSEEESCCCHHHHHHHHHCCCCCCEEEEEEES
T ss_pred             CceEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcC-EEEECCCHHHHhheeeCCCCCHHHHHHHHhcCCCceeEEEEEEC
Confidence            5 889999999999987755 77888899889998 7999999999988864432       345567888999999999


Q ss_pred             CCCCCCCCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCCCcCCCceE
Q 042352          332 KDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRH  411 (445)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~  411 (445)
                      +++|  . .+..+... ...+ ...+.+.    ..|.|..++.++. +....+++++..+.++++|++++|+.  .....
T Consensus       347 ~~~~--~-~~~g~~~~-~~~~-~~~~~~~----~~~~~~~vl~~~~-~~~~~~~~~e~~~~~~~~L~~~~~~~--~~~~~  414 (495)
T 2vvm_A          347 NKDM--R-SWTGIAYP-FNKL-CYAIGDG----TTPAGNTHLVCFG-NSANHIQPDEDVRETLKAVGQLAPGT--FGVKR  414 (495)
T ss_dssp             CGGG--G-GEEEEECS-SCSS-CEEEEEE----ECTTSCEEEEEEE-CSTTCCCTTTCHHHHHHHHHTTSTTS--CCEEE
T ss_pred             CccC--C-CceeEecC-CCCc-EEEecCC----CCCCCCeEEEEEe-CccccCCCHHHHHHHHHHHHHhcCCC--CCceE
Confidence            8864  2 33222222 1222 2233222    2355666666543 43333667778899999999999862  22233


Q ss_pred             eeEeecC------CCCCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352          412 LRTYRVR------FAQPNQSPPTD-LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       412 ~~~~~~~------~~~~~~~~g~~-~~~~~~~t~~~g~~~~  445 (445)
                      +..+++.      .+++...||.. ..++...+|+++||+|
T Consensus       415 ~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fA  455 (495)
T 2vvm_A          415 LVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFA  455 (495)
T ss_dssp             EEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEEC
T ss_pred             EEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEe
Confidence            3333332      23344455653 1234445678899987

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=100.00  E-value=5.4e-33  Score=275.52  Aligned_cols=382  Identities=17%  Similarity=0.155  Sum_probs=241.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceeec-
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFY-  126 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~-  126 (445)
                      .+||+|||||++||+||++|+++|++|+|+|+++++||++.+...+|+.+|.|++++...++.+.++++++|+...... 
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~   84 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYR   84 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEECCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCccccccc
Confidence            5799999999999999999999999999999999999999998889999999999987777788899999998764432 


Q ss_pred             CCcEEEeC--CeeEeccCCcc-chHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHH
Q 042352          127 SGAKVYYN--GQFHTVADPFR-HFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI  203 (445)
Q Consensus       127 ~~~~~~~~--g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~  203 (445)
                      ....++..  |....+....+ ........+.. .....+++...+...... . .......++.++.+|+++.+.+ +.
T Consensus        85 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~~~~l~~~~~~-~~  160 (453)
T 2yg5_A           85 EGESVYISSAGERTRYTGDSFPTNETTKKEMDR-LIDEMDDLAAQIGAEEPW-A-HPLARDLDTVSFKQWLINQSDD-AE  160 (453)
T ss_dssp             CSEEEEECTTSCEEEECSSSCSCCHHHHHHHHH-HHHHHHHHHHHHCSSCGG-G-STTHHHHHSSBHHHHHHHHCSC-HH
T ss_pred             CCCEEEEeCCCceeeccCCCCCCChhhHHHHHH-HHHHHHHHHhhcCCCCCC-C-CcchhhhhhccHHHHHHhhcCC-HH
Confidence            22333332  44443322211 00000000000 000011111000000000 0 0011123468999999987554 45


Q ss_pred             HHHhhhhhhcccccCCcc-chHHHHHHHHHHHh---------hcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEE
Q 042352          204 IDSFFRPFFGGIFFDKEL-ETSSRLFDFIFKCL---------ALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSID  273 (445)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~  273 (445)
                      ++.++.+++...++.++. +.+...........         ..+..+++.||++.++++|++.+ |++|++|++|++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l-g~~i~~~~~V~~i~  239 (453)
T 2yg5_A          161 ARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEAL-GDDVFLNAPVRTVK  239 (453)
T ss_dssp             HHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHH-GGGEECSCCEEEEE
T ss_pred             HHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhc-CCcEEcCCceEEEE
Confidence            677888888777877776 66654332222111         01236789999999999999988 78999999999999


Q ss_pred             ecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCC---c----ccCCCCCcceEEEEEeecCCCCCCCC-CeEEec
Q 042352          274 FDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQP---V----KFQRKPARSTVCLYFSADKDEIPVQE-PVLFLN  345 (445)
Q Consensus       274 ~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~  345 (445)
                      .++++.+.|++ +|++++|+ +||+|+|++.+.+|+.+|   .    ..+...+.+.+++++.|++++|+... ....+.
T Consensus       240 ~~~~~~v~v~~-~~~~~~ad-~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~  317 (453)
T 2yg5_A          240 WNESGATVLAD-GDIRVEAS-RVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFG  317 (453)
T ss_dssp             EETTEEEEEET-TTEEEEEE-EEEECSCGGGGGGSEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGGGTEEEEEEC
T ss_pred             EeCCceEEEEE-CCeEEEcC-EEEEcCCHHHHhcCEeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCCCCCCCceeec
Confidence            87754255766 67789998 799999999998887543   2    34556677889999999998754321 111122


Q ss_pred             CCCCcceEEEEeecccCCCCCCCC-ceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecC--
Q 042352          346 GSGKGIVNNMFFATNVAPLYGPLD-KALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVR--  418 (445)
Q Consensus       346 ~~~~~~~~~~~~~s~~~p~~~p~g-~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--  418 (445)
                      .  ...+ ..++++.     .|++ ..++.+++.+.    |.+++++++++.++++|+++||.... ........++.  
T Consensus       318 ~--~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~-~p~~~~~~~W~~~  388 (453)
T 2yg5_A          318 A--SEVV-QEVYDNT-----NHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAE-EPVVYYESDWGSE  388 (453)
T ss_dssp             T--TSSS-CEEEECC-----CTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGG-CCSEEEECCTTTC
T ss_pred             C--CCCe-EEEEeCC-----CCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCC-CccEEEEeecCCC
Confidence            1  1222 2333322     2334 45666555432    45578899999999999999986321 11112222221  


Q ss_pred             -CC----CCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352          419 -FA----QPNQSPPTD-LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       419 -~~----~~~~~~g~~-~~~~~~~t~~~g~~~~  445 (445)
                       +.    .+...||.. ..++...+|++|||+|
T Consensus       389 ~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~a  421 (453)
T 2yg5_A          389 EWTRGCYAASFDLGGLHRYGADSRTPVGPIHFS  421 (453)
T ss_dssp             TTTCSSSCEEECTTHHHHHGGGTTCCBTTEEEC
T ss_pred             CCCCCCCcCcCCCCccccchHHHhCCcCceEEe
Confidence             11    112344421 2245567889999998

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=100.00  E-value=6.5e-32  Score=268.58  Aligned_cols=361  Identities=19%  Similarity=0.207  Sum_probs=260.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcceeee-ccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      ..+||+|||||++||+||+.|+++| .+|+|+|+++++||++++. ..+|+.+|.|++++...++.+.++++++.-++..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   87 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAVQGWNV   87 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHCSCEEE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHhhhhhh
Confidence            4589999999999999999999998 7999999999999999995 7889999999999987778888888876545555


Q ss_pred             ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHH--HHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHH
Q 042352          125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL--LIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS  202 (445)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~  202 (445)
                      ......++.+|++..++-  ...+..   +     ....+.  ...+....      ......++.++.+|+++. ++.+
T Consensus        88 ~~~~~~~~~~g~~~~~P~--~~~~~~---l-----~~~~~~~~~~~ll~~~------~~~~~~~~~s~~e~~~~~-~g~~  150 (484)
T 4dsg_A           88 LQRESWVWVRGRWVPYPF--QNNIHR---L-----PEQDRKRCLDELVRSH------ARTYTEPPNNFEESFTRQ-FGEG  150 (484)
T ss_dssp             EECCCEEEETTEEEESSG--GGCGGG---S-----CHHHHHHHHHHHHHHH------HCCCSSCCSSHHHHHHHH-HHHH
T ss_pred             ccCceEEEECCEEEEeCc--cchhhh---C-----CHHHHHHHHHHHHHHH------hccCCCCCCCHHHHHHHH-hHHH
Confidence            666677888998877641  111100   0     111111  11111110      001224578999999875 7888


Q ss_pred             HHHHhhhhhhcccccCCccchHHHH----------HHHHHHHhhc--C-------CCccc-cCccccHHHHHHhcCCCCc
Q 042352          203 IIDSFFRPFFGGIFFDKELETSSRL----------FDFIFKCLAL--G-------DNTIP-ANGICQIPNQIASKLPFES  262 (445)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--g-------~~~~~-~gG~~~l~~~l~~~l~g~~  262 (445)
                      +++.++.+++.+.|+.++.++++..          ...+...+..  +       ...+| .||++.++++|++.++..+
T Consensus       151 ~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~~~~  230 (484)
T 4dsg_A          151 IADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPSEK  230 (484)
T ss_dssp             HCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhhhCe
Confidence            8889999999999998887765421          1112222111  1       11234 5899999999999985338


Q ss_pred             EEeC--ceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-----Cc----ccCCCCCcceEEEEEeec
Q 042352          263 ILLN--TRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-----PV----KFQRKPARSTVCLYFSAD  331 (445)
Q Consensus       263 i~~n--~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-----p~----~~~~~~~~~~~~v~~~~~  331 (445)
                      |++|  ++|++|..+++   +|++.+|+++.|+ +||+|+|++.+.+++.+     |+    .+..+.+.+..++++.++
T Consensus       231 i~~~~~~~V~~I~~~~~---~v~~~~G~~~~ad-~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~  306 (484)
T 4dsg_A          231 LTFNSGFQAIAIDADAK---TITFSNGEVVSYD-YLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVK  306 (484)
T ss_dssp             EEECGGGCEEEEETTTT---EEEETTSCEEECS-EEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEE
T ss_pred             EEECCCceeEEEEecCC---EEEECCCCEEECC-EEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEc
Confidence            9999  56999998765   4667889889998 79999999999998854     22    355688999999999998


Q ss_pred             CCCCC--CCCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecC-CCCCCCChHHHHHHHHHHHhHhCCCcCCC
Q 042352          332 KDEIP--VQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG-LFADVMDDNLTAEVIRELSDWFGKSTVGS  408 (445)
Q Consensus       332 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~-~~~~~~~~e~~~~~~~~l~~~~~~~~~~~  408 (445)
                      ++...  .+.+.+++++. ...+..+++.++.+|..+|+|++++.+.+.. ...+.+++++++.++++|.++.+-.....
T Consensus       307 ~~~~~~~~~~~~i~vp~~-~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~~~~~~~~~  385 (484)
T 4dsg_A          307 GTPPPHLKTACWLYFPED-TSPFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLASNLLLPEDL  385 (484)
T ss_dssp             SCCCGGGTTCCEEECCST-TCSCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHTTSCCTTCC
T ss_pred             CCCcccCCCCeEEEEEcC-CCeEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHcCCCCccce
Confidence            87421  23455555544 3356678889999999999998887766543 34567899999999999999864322222


Q ss_pred             ceEeeEeecCCCCCCCCCCCC
Q 042352          409 WRHLRTYRVRFAQPNQSPPTD  429 (445)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~g~~  429 (445)
                      .....+.|+.+++|.+.+|..
T Consensus       386 ~~~~~v~r~~~~yP~y~~~~~  406 (484)
T 4dsg_A          386 LVSKWHYRIEKGYPTPFIGRN  406 (484)
T ss_dssp             EEEEEEEEEEEEEECCBTTHH
T ss_pred             EEEEEEEEeCccccCCCccHH
Confidence            333446777888899888864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.97  E-value=4.7e-30  Score=256.79  Aligned_cols=335  Identities=17%  Similarity=0.170  Sum_probs=204.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-----------------CCeeecccccchhcc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-----------------DGFLLDRGFQIFITA  107 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-----------------~g~~~d~G~~~~~~~  107 (445)
                      +++.+||+|||||++||+||+.|+++|++|+|+|+++++||++.+...                 +|..++.|++++...
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   87 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQS   87 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETT
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccH
Confidence            345689999999999999999999999999999999999999988764                 577889999888765


Q ss_pred             ChhHHHhhcccCCcceeecC---CcEEE-eC-----CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcc
Q 042352          108 YPEAQKLLDYNALNLQKFYS---GAKVY-YN-----GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKT  178 (445)
Q Consensus       108 ~~~~~~l~~~lgl~~~~~~~---~~~~~-~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (445)
                      + .+.++++++|+.......   ...++ .+     |....++.       ....+.    .....+..   .... ...
T Consensus        88 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~----~~~~~l~~---~~~~-~~~  151 (489)
T 2jae_A           88 H-ITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRA-------AKADTF----GYMSELLK---KATD-QGA  151 (489)
T ss_dssp             S-THHHHHHHHTCCEEEECCCCTTSEEECCCSSTTTTCCEEHHH-------HHHHHH----HHHHHHHH---HHHH-HTT
T ss_pred             H-HHHHHHHHcCCceEEccccCCCceEEecCCcccCCccccHHH-------Hhhhhh----ccHHHHHH---HHHh-ccc
Confidence            5 888999999998655432   23444 44     33322211       000000    00000000   0000 000


Q ss_pred             hHH-HhcCCCCcHHHHHHHcCC-------CHHHHHHhhhh-hhcccccC--CccchHHHHHHHHHHH-------hhcCCC
Q 042352          179 DEQ-ILTSSEVPIIELLRNIGF-------SDSIIDSFFRP-FFGGIFFD--KELETSSRLFDFIFKC-------LALGDN  240 (445)
Q Consensus       179 ~~~-~~~~~~~s~~~~l~~~~~-------~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~g~~  240 (445)
                      .+. +...++.++.+|+++.+-       .......++.+ .....++.  ...+........+...       ...+.+
T Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (489)
T 2jae_A          152 LDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMM  231 (489)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSE
T ss_pred             cccccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccE
Confidence            000 000112377777775211       00001111110 00000000  0111111111101111       112356


Q ss_pred             ccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCC---ceEEeccEEEEcCChhHHhhhcCC-Cc---
Q 042352          241 TIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANG---ETLKSEIGVILAVEEPEADKLLRQ-PV---  313 (445)
Q Consensus       241 ~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g---~~i~a~~~VV~a~~~~~~~~ll~~-p~---  313 (445)
                      +++.||++.|+++|++.++.++|++|++|++|+.++++ +.|++.+|   ++++|+ +||+|+|+..+.+|..+ |+   
T Consensus       232 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~~~~ad-~vI~a~p~~~l~~l~~~l~~~~~  309 (489)
T 2jae_A          232 FTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEG-VTVEYTAGGSKKSITAD-YAICTIPPHLVGRLQNNLPGDVL  309 (489)
T ss_dssp             EEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTE-EEEEEEETTEEEEEEES-EEEECSCHHHHTTSEECCCHHHH
T ss_pred             EeecCCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCe-EEEEEecCCeEEEEECC-EEEECCCHHHHHhCccCCCHHHH
Confidence            78999999999999999832799999999999988765 66888776   578998 79999999999888764 43   


Q ss_pred             -ccCCCCCcceEEEEEeecCCCCCCCCCe---EEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCC
Q 042352          314 -KFQRKPARSTVCLYFSADKDEIPVQEPV---LFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVM  385 (445)
Q Consensus       314 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~  385 (445)
                       .++.+.+.+.+++++.|++++|+.....   +...   ...+..+.++|...+  .|++ .++..+..+.    +..++
T Consensus       310 ~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~---~~~~~~~~~~s~~~~--~~~~-~l~~~~~~g~~~~~~~~~~  383 (489)
T 2jae_A          310 TALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNT---DKDISQIMFPYDHYN--SDRG-VVVAYYSSGKRQEAFESLT  383 (489)
T ss_dssp             HHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEE---SSTTCEEECCSSSTT--SSCE-EEEEEEEETHHHHHHHTSC
T ss_pred             HHHHhCCCccceEEEEEeCCCCccCCCCcccccccC---CCCceEEEeCCCCCC--CCCC-EEEEEeeCCchhhhhhcCC
Confidence             3556778899999999999875422121   1111   123445666765443  2322 4443444432    55678


Q ss_pred             ChHHHHHHHHHHHhHhCC
Q 042352          386 DDNLTAEVIRELSDWFGK  403 (445)
Q Consensus       386 ~~e~~~~~~~~l~~~~~~  403 (445)
                      ++++++.++++|+++||.
T Consensus       384 ~~~~~~~~l~~L~~~~~~  401 (489)
T 2jae_A          384 HRQRLAKAIAEGSEIHGE  401 (489)
T ss_dssp             HHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHHcCc
Confidence            999999999999999987

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.96  E-value=2.8e-29  Score=251.79  Aligned_cols=341  Identities=16%  Similarity=0.120  Sum_probs=214.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcccCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQ  123 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~  123 (445)
                      ...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+..  .+|+.+|.|++++...++.+.++++++|+...
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~  110 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN  110 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence            3468999999999999999999999999999999999999998876  57899999999987777889999999998765


Q ss_pred             ee---cCCcEEEeCCeeEeccCCccchHHHHHhhcCC-----c-cchHHHHHHhhhhhhhhh--cch-HHHhcCCCCcHH
Q 042352          124 KF---YSGAKVYYNGQFHTVADPFRHFWDSIKSLANP-----I-GSVLDKLLIGLTRIRVLI--KTD-EQILTSSEVPII  191 (445)
Q Consensus       124 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~s~~  191 (445)
                      .+   .....+..+|.......    .......+...     . ....+.+......+....  ... .....++..++.
T Consensus       111 ~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  186 (498)
T 2iid_A          111 EFSQENDNAWYFIKNIRKKVGE----VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTK  186 (498)
T ss_dssp             EECSCCTTSEEEETTEEEEHHH----HHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHH
T ss_pred             eecccCCccEEEeCCeeecccc----cccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhhHH
Confidence            43   22334455554332110    00000000000     0 000111111111100000  000 112234668999


Q ss_pred             HHHHHcC-CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceee
Q 042352          192 ELLRNIG-FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVL  270 (445)
Q Consensus       192 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~  270 (445)
                      +|+++.+ ++....+.+ ..++......... ........ .........+++.||++.|+++|++.++ .+|++|++|+
T Consensus       187 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~gG~~~l~~~l~~~l~-~~i~~~~~V~  262 (498)
T 2iid_A          187 EYLIKEGDLSPGAVDMI-GDLLNEDSGYYVS-FIESLKHD-DIFAYEKRFDEIVDGMDKLPTAMYRDIQ-DKVHFNAQVI  262 (498)
T ss_dssp             HHHHHTSCCCHHHHHHH-HHHTTCGGGTTSB-HHHHHHHH-HHHTTCCCEEEETTCTTHHHHHHHHHTG-GGEESSCEEE
T ss_pred             HHHHHccCCCHHHHHHH-HHhcCcccchhHH-HHHHHHHH-hccccCcceEEeCCcHHHHHHHHHHhcc-cccccCCEEE
Confidence            9998865 455443322 2222111000000 00111110 1111223566889999999999999984 4999999999


Q ss_pred             EEEecCCCcCeEEeCCCc----eEEeccEEEEcCChhHHhhhcCC---Cc----ccCCCCCcceEEEEEeecCCCCCCCC
Q 042352          271 SIDFDEQNMPNVRLANGE----TLKSEIGVILAVEEPEADKLLRQ---PV----KFQRKPARSTVCLYFSADKDEIPVQE  339 (445)
Q Consensus       271 ~I~~~~~~~~~V~~~~g~----~i~a~~~VV~a~~~~~~~~ll~~---p~----~~~~~~~~~~~~v~~~~~~~~~~~~~  339 (445)
                      +|+.++++ +.|++.+|+    +++|+ +||+|+|+..+.++...   |.    +++.+.+.+..++++.|++++|+...
T Consensus       263 ~I~~~~~~-v~v~~~~~~~~~~~~~ad-~vI~t~p~~~~~~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~  340 (498)
T 2iid_A          263 KIQQNDQK-VTVVYETLSKETPSVTAD-YVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDG  340 (498)
T ss_dssp             EEEECSSC-EEEEEECSSSCCCEEEES-EEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGGGT
T ss_pred             EEEECCCe-EEEEEecCCcccceEEeC-EEEECCChHHHhheecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCCccCCC
Confidence            99998765 678887775    47998 79999999988887543   32    34567888899999999999864321


Q ss_pred             C--eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352          340 P--VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGK  403 (445)
Q Consensus       340 ~--~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~  403 (445)
                      .  ...+.+   .....+.+++..    .|+|..+|..+..+.    +..++++++.+.++++|+++||.
T Consensus       341 ~~~~~~~~~---~~~~~~~~~s~~----~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~  403 (498)
T 2iid_A          341 IHGGKSTTD---LPSRFIYYPNHN----FTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQL  403 (498)
T ss_dssp             CCSSEEEES---STTCEEECCSSC----CTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             ccCCcccCC---CCcceEEECCCC----CCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCC
Confidence            0  111111   122344555522    366677776655432    56788999999999999999983

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.96  E-value=1e-26  Score=228.87  Aligned_cols=366  Identities=15%  Similarity=0.160  Sum_probs=227.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC---Ceeecccccchhcc-ChhHHHhhcccCCccee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD---GFLLDRGFQIFITA-YPEAQKLLDYNALNLQK  124 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~  124 (445)
                      +||+|||||++||+||+.|+++|++|+|||+++++||++.+.+.+   |..++.|++++... ++.+.++++++|++...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   81 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAA   81 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeeee
Confidence            699999999999999999999999999999999999999998777   99999999998777 78888888889987655


Q ss_pred             ecCCcEEEe---CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhc-chHHHhcCCCCcHHHHHHHcCCC
Q 042352          125 FYSGAKVYY---NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIK-TDEQILTSSEVPIIELLRNIGFS  200 (445)
Q Consensus       125 ~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~l~~~~~~  200 (445)
                      ........+   ++++...............       ....++......+..... ........+ .++.+++++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~d-~s~~~~l~~~~~~  153 (431)
T 3k7m_X           82 ASEFTSFRHRLGPTAVDQAFPIPGSEAVAVE-------AATYTLLRDAHRIDLEKGLENQDLEDLD-IPLNEYVDKLDLP  153 (431)
T ss_dssp             CCCCCEECCBSCTTCCSSSSCCCGGGHHHHH-------HHHHHHHHHHTTCCTTTCTTSSSCGGGC-SBHHHHHHHHTCC
T ss_pred             cCCCCcEEEEecCCeecCCCCCCHHHHHHHH-------HHHHHHHHHHHhcCCCCCccCcchhhhc-CCHHHHHHhcCCC
Confidence            433322222   2211111000000011000       001111111111100000 001112234 7899999887665


Q ss_pred             HHHHHHhhhhhhcccccCCccchHHHHHHHHHHH--------hhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEE
Q 042352          201 DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC--------LALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSI  272 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I  272 (445)
                      .. ...++.++....++.+..+.+..........        +..... .+.+|++.+++++++.+ | +|++|++|++|
T Consensus       154 ~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~~~~-g-~i~~~~~V~~i  229 (431)
T 3k7m_X          154 PV-SRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDE-VFSNGSADLVDAMSQEI-P-EIRLQTVVTGI  229 (431)
T ss_dssp             HH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCE-EETTCTHHHHHHHHTTC-S-CEESSCCEEEE
T ss_pred             HH-HHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhh-hcCCcHHHHHHHHHhhC-C-ceEeCCEEEEE
Confidence            54 4455666666666666655544332211111        111122 67999999999999887 6 99999999999


Q ss_pred             EecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCeEEec
Q 042352          273 DFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPVLFLN  345 (445)
Q Consensus       273 ~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  345 (445)
                      +.++++ +.|++.+|++++|| +||+|+|+..+.++...|.       ......+...+++++.|++++  .  +++. .
T Consensus       230 ~~~~~~-v~v~~~~g~~~~ad-~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~--~--~i~~-~  302 (431)
T 3k7m_X          230 DQSGDV-VNVTVKDGHAFQAH-SVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHVRGAE--A--GIEC-V  302 (431)
T ss_dssp             ECSSSS-EEEEETTSCCEEEE-EEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC--T--TEEE-E
T ss_pred             EEcCCe-EEEEECCCCEEEeC-EEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC--c--CceE-c
Confidence            988766 67899999889998 7999999999888754432       234456677799999999885  1  3333 2


Q ss_pred             CCCCcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCCCc-----CCCceEeeEeecCCC
Q 042352          346 GSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKST-----VGSWRHLRTYRVRFA  420 (445)
Q Consensus       346 ~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~  420 (445)
                      +..  . ....+++...    ..+..++..+..+...+..++   +.+.+.|++++|+..     ..+|...+-.+..|+
T Consensus       303 ~d~--~-~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~W~~d~~~~G~~~  372 (431)
T 3k7m_X          303 GDG--I-FPTLYDYCEV----SESERLLVAFTDSGSFDPTDI---GAVKDAVLYYLPEVEVLGIDYHDWIADPLFEGPWV  372 (431)
T ss_dssp             BSS--S-SSEEEEEEEC----SSSEEEEEEEEETTTCCTTCH---HHHHHHHHHHCTTCEEEEEECCCTTTCTTTSSSSC
T ss_pred             CCC--C-EEEEEeCcCC----CCCCeEEEEEeccccCCCCCH---HHHHHHHHHhcCCCCccEeEecccCCCCCCCCCCC
Confidence            221  1 1222332211    123455554444443222232   357788999998743     356664333343443


Q ss_pred             CCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352          421 QPNQSPPTD-LIKNPKSEFSLAVYLC  445 (445)
Q Consensus       421 ~~~~~~g~~-~~~~~~~t~~~g~~~~  445 (445)
                        ...||+. ..++.-..|..+||+|
T Consensus       373 --~~~~g~~~~~~~~l~~p~g~~~fA  396 (431)
T 3k7m_X          373 --APRVGQFSRVHKELGEPAGRIHFV  396 (431)
T ss_dssp             --CCCTTTTTTSSGGGGSCBTTEEEC
T ss_pred             --CcCCCCCcccHHHHhCCCCcEEEE
Confidence              3566763 4466667778889987

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.96  E-value=1e-27  Score=238.52  Aligned_cols=375  Identities=17%  Similarity=0.163  Sum_probs=217.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcceeeeccCCeeecccccchhc----cChhHHHhhcc-cCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT----AYPEAQKLLDY-NAL  120 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~----~~~~~~~l~~~-lgl  120 (445)
                      ..+||+|||||++||++|+.|++.|+ +|+|+|+++++||++.+...+|..+|.|++++.+    ....+.+++++ +++
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl   82 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKL   82 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCC
Confidence            45799999999999999999999999 8999999999999999999999999999999873    23467888998 888


Q ss_pred             cceeecC-C--cEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHH--HH
Q 042352          121 NLQKFYS-G--AKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIE--LL  194 (445)
Q Consensus       121 ~~~~~~~-~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~l  194 (445)
                      ....... .  ..++. +|+....        .......    ............+......    ...++.++.+  ++
T Consensus        83 ~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~l  146 (472)
T 1b37_A           83 RNFRSDFDYLAQNVYKEDGGVYDE--------DYVQKRI----ELADSVEEMGEKLSATLHA----SGRDDMSILAMQRL  146 (472)
T ss_dssp             CEEECCCTTGGGCEECSSSSBCCH--------HHHHHHH----HHHHHHHHHHHHHHHTSCT----TCTTCCBHHHHHHH
T ss_pred             ceeeccCccccceeEcCCCCCCCH--------HHHHHHH----HHHHHHHHHHHHHHHhhcc----ccchhhhHHHHHHH
Confidence            6543211 1  11222 3433211        0000000    0001100000001000000    1223455543  55


Q ss_pred             HHcCC--CHHHHHHhhhhhhc-ccccCCccchHHHHH--HHHHHHhhcCCC--ccccCccccHHHHHHhcCC--------
Q 042352          195 RNIGF--SDSIIDSFFRPFFG-GIFFDKELETSSRLF--DFIFKCLALGDN--TIPANGICQIPNQIASKLP--------  259 (445)
Q Consensus       195 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~g~~--~~~~gG~~~l~~~l~~~l~--------  259 (445)
                      .+...  .....+.++.++.. ..+..+....+....  ...+... .+..  ..+.||++.++++|++.+.        
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~  225 (472)
T 1b37_A          147 NEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDF-GDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGK  225 (472)
T ss_dssp             HHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSCHHHHHH-CSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCC
T ss_pred             hhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccccccccc-CCceeeeecCCcHHHHHHHHHHhcccccccccc
Confidence            44321  11112223333321 112222222111000  0000111 1212  2347999999999998863        


Q ss_pred             --CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcC--CCc-------ccCCCCCcceEEEEE
Q 042352          260 --FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLR--QPV-------KFQRKPARSTVCLYF  328 (445)
Q Consensus       260 --g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~--~p~-------~~~~~~~~~~~~v~~  328 (445)
                        |++|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|++.+.+++.  .|.       .++...+.+..++++
T Consensus       226 i~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad-~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l  303 (472)
T 1b37_A          226 IVDPRLQLNKVVREIKYSPGG-VTVKTEDNSVYSAD-YVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFL  303 (472)
T ss_dssp             BCCTTEESSCCEEEEEECSSC-EEEEETTSCEEEES-EEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEE
T ss_pred             ccccEEEcCCEEEEEEEcCCc-EEEEECCCCEEEcC-EEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEE
Confidence              5799999999999998766 66999999889998 7999999999887542  222       344566778899999


Q ss_pred             eecCCCCCCC--CCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhC
Q 042352          329 SADKDEIPVQ--EPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFG  402 (445)
Q Consensus       329 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~  402 (445)
                      .|++++|+..  ..++.......+..  ..|.+ .++. .| +.+++.+++.+.    +..++++++.+.++++|+++||
T Consensus       304 ~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~p-~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~P  378 (472)
T 1b37_A          304 KFPRKFWPEGKGREFFLYASSRRGYY--GVWQE-FEKQ-YP-DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFP  378 (472)
T ss_dssp             ECSSCCSCCSTTCSEEEECCSSTTSS--CEEEE-CTTT-ST-TCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCT
T ss_pred             ECCCcCCCCCCCcceEEecccCCccc--eeeec-ccCC-CC-CCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHcC
Confidence            9999987542  12222222211111  12221 1222 34 445665555432    5578899999999999999997


Q ss_pred             CCcCCCceEeeEeec------CCCCCCCCCCCCC-CCCCcccCCCCeeeC
Q 042352          403 KSTVGSWRHLRTYRV------RFAQPNQSPPTDL-IKNPKSEFSLAVYLC  445 (445)
Q Consensus       403 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~-~~~~~~t~~~g~~~~  445 (445)
                      +............++      ..++....||... .++...||+++||+|
T Consensus       379 g~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fA  428 (472)
T 1b37_A          379 GKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFT  428 (472)
T ss_dssp             TSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEEC
T ss_pred             CCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEe
Confidence            643221111112222      1122223456542 245567899999997

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.95  E-value=6e-28  Score=242.80  Aligned_cols=273  Identities=20%  Similarity=0.188  Sum_probs=164.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcceeeecc-CCeeecccccchhcc-ChhHHHhhcccCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITA-YPEAQKLLDYNALNLQ  123 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~  123 (445)
                      ..+||+|||||++||+||+.|+++| ++|+|||+++++||++.+... +|+.+|+|++++.+. ...+.+++.++++...
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~~   86 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLNDG   86 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHHC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCCc
Confidence            3479999999999999999999999 999999999999999999886 799999999998754 3345555555554211


Q ss_pred             eecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHc------
Q 042352          124 KFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNI------  197 (445)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------  197 (445)
                      .   ....+.++....+.........       ........+...+..+....  .......++.++.+++++.      
T Consensus        87 ~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~s~~~~l~~~l~~~~~  154 (516)
T 1rsg_A           87 R---TRFVFDDDNFIYIDEERGRVDH-------DKELLLEIVDNEMSKFAELE--FHQHLGVSDCSFFQLVMKYLLQRRQ  154 (516)
T ss_dssp             C---CCEECCCCCCEEEETTTEECTT-------CTTTCHHHHHHHHHHHHHHH--C-------CCBHHHHHHHHHHHHGG
T ss_pred             c---eeEEECCCCEEEEcCCCccccc-------cHHHHHHHHHHHHHHHHHHH--hhhccCCCCCCHHHHHHHHHHHhhc
Confidence            0   0111111221111110000000       00000111111111111100  0001123457888776541      


Q ss_pred             CCCHHHHHHhhhhhhc---ccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEe
Q 042352          198 GFSDSIIDSFFRPFFG---GIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDF  274 (445)
Q Consensus       198 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~  274 (445)
                      .+.+. ...++..++.   ..++.+....+.... .   ....+...++.| ++.|+++|++.+++++|++|++|++|..
T Consensus       155 ~l~~~-~~~~~~~~~~~~~~~~g~~~~~~s~~~~-~---~~~~~~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~  228 (516)
T 1rsg_A          155 FLTND-QIRYLPQLCRYLELWHGLDWKLLSAKDT-Y---FGHQGRNAFALN-YDSVVQRIAQSFPQNWLKLSCEVKSITR  228 (516)
T ss_dssp             GSCHH-HHHHHHHHHGGGHHHHTBCTTTSBHHHH-C---CCCSSCCEEESC-HHHHHHHHHTTSCGGGEETTCCEEEEEE
T ss_pred             ccCHH-HHHHHHHHHHHHHHHhCCChHHCChHHH-H---hhccCcchhhhC-HHHHHHHHHHhCCCCEEEECCEEEEEEE
Confidence            11111 1112222221   112233333332211 0   012234456677 9999999999987678999999999998


Q ss_pred             cCCCcCeEEeCCCceEEeccEEEEcCChhHHhh-------------hcCC-Cc----ccCCCCCcceEEEEEeecCCCCC
Q 042352          275 DEQNMPNVRLANGETLKSEIGVILAVEEPEADK-------------LLRQ-PV----KFQRKPARSTVCLYFSADKDEIP  336 (445)
Q Consensus       275 ~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~-------------ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~  336 (445)
                      ++++.+.|++.+|++++|+ +||+|+|+..+..             +.++ |.    +++.+.+.+..+|++.|+++||+
T Consensus       229 ~~~~~v~v~~~~g~~~~ad-~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~  307 (516)
T 1rsg_A          229 EPSKNVTVNCEDGTVYNAD-YVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWS  307 (516)
T ss_dssp             CTTSCEEEEETTSCEEEEE-EEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSC
T ss_pred             cCCCeEEEEECCCcEEECC-EEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCC
Confidence            7545588999999889998 7999999998853             2333 32    46778889999999999999976


Q ss_pred             CC
Q 042352          337 VQ  338 (445)
Q Consensus       337 ~~  338 (445)
                      ..
T Consensus       308 ~~  309 (516)
T 1rsg_A          308 NE  309 (516)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.95  E-value=1.9e-26  Score=227.77  Aligned_cols=338  Identities=14%  Similarity=0.161  Sum_probs=195.9

Q ss_pred             cccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCC-ee---------------ecccccc
Q 042352           40 SLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG-FL---------------LDRGFQI  103 (445)
Q Consensus        40 ~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g-~~---------------~d~G~~~  103 (445)
                      +.+..++..+||||||||++||+||+.|+++|++|+|+|+++++||++++++.+| +.               ++.|.++
T Consensus         3 ~~~~~~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~   82 (453)
T 2bcg_G            3 MDQETIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDW   82 (453)
T ss_dssp             ----CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGC
T ss_pred             CchhhccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccce
Confidence            3345566779999999999999999999999999999999999999999987655 22               3344444


Q ss_pred             hhc-------cChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHH--HHhhh
Q 042352          104 FIT-------AYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL--LIGLT  170 (445)
Q Consensus       104 ~~~-------~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  170 (445)
                      ...       ....+.++++++|+.    +.... ..+.+.+|+...++...      ...+........++.  ...+.
T Consensus        83 ~~~l~P~~l~~~~~l~~ll~~lg~~~~l~~~~~~-~~~~~~~g~~~~~p~~~------~~~~~~~l~~~~~~~~~~~~~~  155 (453)
T 2bcg_G           83 NVDLIPKFLMANGELTNILIHTDVTRYVDFKQVS-GSYVFKQGKIYKVPANE------IEAISSPLMGIFEKRRMKKFLE  155 (453)
T ss_dssp             CEESSCCBEETTSHHHHHHHHHTGGGTCCEEECC-CEEEEETTEEEECCSSH------HHHHHCTTSCHHHHHHHHHHHH
T ss_pred             eeccccceeecCcHHHHHHHhcCCccceEEEEcc-ceeEEeCCeEEECCCCh------HHHHhhhccchhhHHHHHHHHH
Confidence            322       234677888887763    22322 34455677766654331      111112222222211  11111


Q ss_pred             hhhhhhcch-HHH--hcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcc----cccCCccchHH-HHHHHHH--HHhhcCCC
Q 042352          171 RIRVLIKTD-EQI--LTSSEVPIIELLRNIGFSDSIIDSFFRPFFGG----IFFDKELETSS-RLFDFIF--KCLALGDN  240 (445)
Q Consensus       171 ~~~~~~~~~-~~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~--~~~~~g~~  240 (445)
                      ......... ..+  ......++.+|+++.+.++... .++...+..    .+...+..... .+..+..  ..+..+.+
T Consensus       156 ~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~  234 (453)
T 2bcg_G          156 WISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTK-EFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPY  234 (453)
T ss_dssp             HHHHCBTTBGGGSTTCCTTTSBHHHHHHHTTCCHHHH-HHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSE
T ss_pred             HHHHhccCCchhhhccccccCCHHHHHHHhCCCHHHH-HHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhhcCCce
Confidence            111100000 000  1245789999999887776644 333221110    11212211111 1111111  12233445


Q ss_pred             ccccCccccHHHHHHhcCC--CCcEEeCceeeEEEec--CCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccC
Q 042352          241 TIPANGICQIPNQIASKLP--FESILLNTRVLSIDFD--EQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQ  316 (445)
Q Consensus       241 ~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~--~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~  316 (445)
                      .+|.||++.++++|++.+.  |++|++|++|++|..+  ++++++|++ +|+++.|+ .||+|++++.- ++-    ...
T Consensus       235 ~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad-~VV~a~~~~~~-~l~----~~~  307 (453)
T 2bcg_G          235 LYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAP-LVIADPTYFPE-KCK----STG  307 (453)
T ss_dssp             EEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECS-CEEECGGGCGG-GEE----EEE
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECC-EEEECCCccch-hhc----ccC
Confidence            5999999999999998774  9999999999999987  666567877 57789998 69999998731 221    000


Q ss_pred             CCCCcceEEEEEeecCCCCC---C-CCCeEEecCCC--CcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHH
Q 042352          317 RKPARSTVCLYFSADKDEIP---V-QEPVLFLNGSG--KGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLT  390 (445)
Q Consensus       317 ~~~~~~~~~v~~~~~~~~~~---~-~~~~~~~~~~~--~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~  390 (445)
                      . ...+.+++   ++++. +   . .++.+.++...  ......+..+|..+ +.+|+|++++.++...+..  +   ..
T Consensus       308 ~-~~~~~~~i---~~~~~-~~~~~~~~~~ii~~~~~~~~~~~~~v~~~s~~d-~~aP~G~~~~~v~~~~~~~--~---~~  376 (453)
T 2bcg_G          308 Q-RVIRAICI---LNHPV-PNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAH-NVCSKGHYLAIISTIIETD--K---PH  376 (453)
T ss_dssp             E-EEEEEEEE---ESSCC-TTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGG-TSSCTTCEEEEEEEECCSS--C---HH
T ss_pred             C-cceeEEEE---Ecccc-CCCCCCccEEEEeCccccCCCCCEEEEEeCCCC-CCCCCCcEEEEEEEecCCC--C---HH
Confidence            0 23333333   56654 3   1 23344444321  12345677788877 8899999999887654321  2   22


Q ss_pred             HHHHHHHHhHhCC
Q 042352          391 AEVIRELSDWFGK  403 (445)
Q Consensus       391 ~~~~~~l~~~~~~  403 (445)
                      +.+...++++.|.
T Consensus       377 ~~l~~~~~~l~~~  389 (453)
T 2bcg_G          377 IELEPAFKLLGPI  389 (453)
T ss_dssp             HHTHHHHGGGCSC
T ss_pred             HHHHHHHHHhhhH
Confidence            3344555555543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.94  E-value=1.1e-25  Score=221.01  Aligned_cols=331  Identities=18%  Similarity=0.215  Sum_probs=202.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF  125 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~  125 (445)
                      +.+||+|||||++||+||++|+++| ++|+|+|+++++||++.+.+.+|+.+|.|++++...++.+.++++++|++....
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~~~~   84 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTGDKVDGP   84 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHCCCCCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhCCccccc
Confidence            4579999999999999999999999 999999999999999999999999999999998777888999999999876542


Q ss_pred             cCCcEEE-eCCeeEecc-CCccchHHHHHhhcCCccchHHHHHHhhhh-hhhhhc--chHHHhcCCCCcHHHHHHHcCCC
Q 042352          126 YSGAKVY-YNGQFHTVA-DPFRHFWDSIKSLANPIGSVLDKLLIGLTR-IRVLIK--TDEQILTSSEVPIIELLRNIGFS  200 (445)
Q Consensus       126 ~~~~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~s~~~~l~~~~~~  200 (445)
                      .....+. .+|...... ++... ....        ...+++...+.. +.....  ........+..++.+|+++.+.+
T Consensus        85 ~~~~~~~~~~g~~~~~~~~~~~~-~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  155 (424)
T 2b9w_A           85 KLRREFLHEDGEIYVPEKDPVRG-PQVM--------AAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCE  155 (424)
T ss_dssp             CCCEEEECTTSCEECGGGCTTHH-HHHH--------HHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTTCG
T ss_pred             cccceeEcCCCCEeccccCcccc-hhHH--------HHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhCcH
Confidence            2222222 234332110 11100 0000        001111110000 000000  00001112357999999988765


Q ss_pred             HHHHHHhhhhhhcccccCCccchHHHHH-HHH----HHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEec
Q 042352          201 DSIIDSFFRPFFGGIFFDKELETSSRLF-DFI----FKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFD  275 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~  275 (445)
                       .+.+.+..+++...|+.+ .+.++... .+.    ......++.+.+.+|++.++++|.+.+ +.+|++|++|++|..+
T Consensus       156 -~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l-~~~v~~~~~V~~i~~~  232 (424)
T 2b9w_A          156 -AARDLWINPFTAFGYGHF-DNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATL-EHPAERNVDITRITRE  232 (424)
T ss_dssp             -GGHHHHTTTTCCCCCCCT-TTSBHHHHHHHSCHHHHHHHHHTCCBCCTTCHHHHHHHHHHHS-SSCCBCSCCEEEEECC
T ss_pred             -HHHHHHHHHHHhhccCCh-HhcCHHHHHHhhhHhhhhcccCCceEEeCChHHHHHHHHHHhh-cceEEcCCEEEEEEEE
Confidence             456667777777666543 33433221 110    011223456688999999999999998 5789999999999988


Q ss_pred             CCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-Cc---ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcc
Q 042352          276 EQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-PV---KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGI  351 (445)
Q Consensus       276 ~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  351 (445)
                      +++ +.|++.+|+ ++|+ +||+|+|++.+.+++++ |+   ...+..+... .+.+.+...+ +.  ...+++......
T Consensus       233 ~~~-v~v~~~~g~-~~ad-~Vv~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~  305 (424)
T 2b9w_A          233 DGK-VHIHTTDWD-RESD-VLVLTVPLEKFLDYSDADDDEREYFSKIIHQQY-MVDACLVKEY-PT--ISGYVPDNMRPE  305 (424)
T ss_dssp             TTC-EEEEESSCE-EEES-EEEECSCHHHHTTSBCCCHHHHHHHTTCEEEEE-EEEEEEESSC-CS--SEEECGGGGSGG
T ss_pred             CCE-EEEEECCCe-EEcC-EEEECCCHHHHhhccCCCHHHHHHHhcCCccee-EEEEEEeccC-Cc--ccccccCCCCCc
Confidence            766 568888885 8998 79999999998888766 32   2334444432 2333333333 11  122333321110


Q ss_pred             eE--EEEeecccCCCCCCCCceEEEEEecC---CCCCCCChHHHHHHHHHHHhH
Q 042352          352 VN--NMFFATNVAPLYGPLDKALISVSLIG---LFADVMDDNLTAEVIRELSDW  400 (445)
Q Consensus       352 ~~--~~~~~s~~~p~~~p~g~~~l~~~~~~---~~~~~~~~e~~~~~~~~l~~~  400 (445)
                      ..  .+..... .+. .|  ..++..+..+   .+.+.+++++++.+++.|+++
T Consensus       306 ~~g~~~~~~~~-~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l  355 (424)
T 2b9w_A          306 RLGHVMVYYHR-WAD-DP--HQIITTYLLRNHPDYADKTQEECRQMVLDDMETF  355 (424)
T ss_dssp             GTTSCCEEEEC-CTT-CT--TSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCcceEEeee-cCC-CC--ceEEEEEeccCCCcccccChHHHHHHHHHHHHHc
Confidence            10  1111111 111 11  2334444332   244567789999999999994

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1e-26  Score=225.80  Aligned_cols=304  Identities=13%  Similarity=0.091  Sum_probs=207.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcceeeecc--CCeee-cccccchhccChhHHHhhcccCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRVRTDSV--DGFLL-DRGFQIFITAYPEAQKLLDYNAL  120 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~l~~~lgl  120 (445)
                      |.+++||+|||||++||+||+.|+++ |++|+|+|+++++||++.+...  +|+.+ +.|++++...++.+.++++++++
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~g~   83 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTD   83 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTTCC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHhhh
Confidence            44578999999999999999999999 9999999999999999999887  68877 59999998888999999999887


Q ss_pred             cceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352          121 NLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS  200 (445)
Q Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  200 (445)
                       +..+.....++++|+...++....    .+..+..... ..++....+....   ...   ...+..++.+|+.+ .++
T Consensus        84 -~~~~~~~~~~~~~G~~~~~p~~~~----~~~~l~~~~~-~~~~~~~~l~~~~---~~~---~~~~~~s~~e~l~~-~~g  150 (399)
T 1v0j_A           84 -FTDYRHRVFAMHNGQAYQFPMGLG----LVSQFFGKYF-TPEQARQLIAEQA---AEI---DTADAQNLEEKAIS-LIG  150 (399)
T ss_dssp             -BCCCCCCEEEEETTEEEEESSSHH----HHHHHHTSCC-CHHHHHHHHHHHG---GGS---CTTC----CCHHHH-HHC
T ss_pred             -hhccccceEEEECCEEEeCCCCHH----HHHHHhcccC-CHHHHHHHHHHHh---hcc---CCCCcccHHHHHHH-HHh
Confidence             344455566778888877654321    1222222111 1222221111111   111   12346789999987 588


Q ss_pred             HHHHHHhhhhhhcccccCCccchHHHHHHHHHH--HhhcC----CC-ccccCccccHHHHHHhcCCCCcEEeCceeeEEE
Q 042352          201 DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFK--CLALG----DN-TIPANGICQIPNQIASKLPFESILLNTRVLSID  273 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g----~~-~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~  273 (445)
                      +.+++.++.+++.+.|+.++.++++.....+..  ....+    .+ .+|.||+++++++|++.+ |++|++|++|++|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~-g~~I~l~~~V~~I~  229 (399)
T 1v0j_A          151 RPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADH-RIEVRLNTDWFDVR  229 (399)
T ss_dssp             HHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCST-TEEEECSCCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHHHhcC-CeEEEECCchhhhh
Confidence            999999999999999998888776543210000  00011    12 288999999999999977 78999999999996


Q ss_pred             ecCCCcCeEEeCCCceE-EeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcce
Q 042352          274 FDEQNMPNVRLANGETL-KSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIV  352 (445)
Q Consensus       274 ~~~~~~~~V~~~~g~~i-~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (445)
                      ..      |   +  ++ .+| +||+|+|++.+.++.     +..+.+.+...+.+.++.+.+ .+..++.++.. ...+
T Consensus       230 ~~------v---~--~~~~aD-~VI~t~p~~~l~~~~-----l~~l~y~s~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~  290 (399)
T 1v0j_A          230 GQ------L---R--PGSPAA-PVVYTGPLDRYFDYA-----EGRLGWRTLDFEVEVLPIGDF-QGTAVMNYNDL-DVPY  290 (399)
T ss_dssp             HH------H---T--TTSTTC-CEEECSCHHHHTTTT-----TCCCCEEEEEEEEEEESSSCS-SSSSEEEECCT-TSSC
T ss_pred             hh------h---h--hcccCC-EEEECCcHHHHHhhh-----hCCCCcceEEEEEEEEccccC-CCCeEEEeCCC-CCCc
Confidence            42      2   1  34 677 699999999887663     235678888888888876542 22334455443 2234


Q ss_pred             EEEEeecccCCCCC-CCCceEEEEEecCCC
Q 042352          353 NNMFFATNVAPLYG-PLDKALISVSLIGLF  381 (445)
Q Consensus       353 ~~~~~~s~~~p~~~-p~g~~~l~~~~~~~~  381 (445)
                      ..+++.++..|... |+++.++...+...|
T Consensus       291 ~ri~~~~~~~~~~~~~~~~~~v~~e~~~~~  320 (399)
T 1v0j_A          291 TRIHEFRHFHPERDYPTDKTVIMREYSRFA  320 (399)
T ss_dssp             SEEEEGGGGCTTSCCCSSCEEEEEEEEEEC
T ss_pred             ceeEeecCCCCCCcCCCCCeEEEEeecccc
Confidence            45677777667776 667777766554433

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.93  E-value=6.8e-25  Score=228.76  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=111.3

Q ss_pred             CCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCC------CceEEeccEEEEcCChhHHhhhc--
Q 042352          238 GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLAN------GETLKSEIGVILAVEEPEADKLL--  309 (445)
Q Consensus       238 g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~------g~~i~a~~~VV~a~~~~~~~~ll--  309 (445)
                      +.++.+.||++.|+++|++.+   +|++|++|++|..++++ +.|++.+      |++++|+ +||+|+|+.++.+++  
T Consensus       562 g~~~~~~gG~~~L~~aLa~~l---~I~Lnt~V~~I~~~~~g-V~V~~~~~~~~~~g~~i~AD-~VIvTvPl~vLk~l~~~  636 (852)
T 2xag_A          562 GSHLTVRNGYSCVPVALAEGL---DIKLNTAVRQVRYTASG-CEVIAVNTRSTSQTFIYKCD-AVLCTLPLGVLKQQPPA  636 (852)
T ss_dssp             SCCEEETTCTTHHHHHHTTTC---CEECSEEEEEEEEETTE-EEEEEEESSSTTCEEEEEES-EEEECCCHHHHHCSSCS
T ss_pred             CceEEecCcHHHHHHHHHhCC---CEEeCCeEEEEEEcCCc-EEEEEeecccCCCCeEEECC-EEEECCCHHHHHhhhcc
Confidence            456788999999999999865   79999999999998765 6677765      5679998 799999999998742  


Q ss_pred             ----CC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCC--CcceEEEEeecccCCCCCCCCceEEEEEec
Q 042352          310 ----RQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSG--KGIVNNMFFATNVAPLYGPLDKALISVSLI  378 (445)
Q Consensus       310 ----~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~  378 (445)
                          ++ |.    +++.+.+.+..+|++.|+++||+.....+.+....  ......++|++.        +..+|.+++.
T Consensus       637 I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~--------~~pvLl~~v~  708 (852)
T 2xag_A          637 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY--------KAPILLALVA  708 (852)
T ss_dssp             SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECS--------SSSEEEEEEC
T ss_pred             cccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCCCCceEEEecCC--------CCCEEEEEec
Confidence                22 32    34567788999999999999976433443322111  111123445442        1235555554


Q ss_pred             CC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352          379 GL----FADVMDDNLTAEVIRELSDWFGKST  405 (445)
Q Consensus       379 ~~----~~~~~~~e~~~~~~~~l~~~~~~~~  405 (445)
                      +.    +..++++++++.++++|+++||...
T Consensus       709 G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~  739 (852)
T 2xag_A          709 GEAAGIMENISDDVIVGRCLAILKGIFGSSA  739 (852)
T ss_dssp             HHHHHHGGGSCHHHHHHHHHHHHHHHHCTTT
T ss_pred             CcCHHHHhcCCHHHHHHHHHHHHHHHhCccc
Confidence            43    5578999999999999999998743

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.93  E-value=2.5e-24  Score=205.07  Aligned_cols=195  Identities=10%  Similarity=0.060  Sum_probs=138.0

Q ss_pred             CccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC--C---c-
Q 042352          240 NTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ--P---V-  313 (445)
Q Consensus       240 ~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~--p---~-  313 (445)
                      .+...+|++.++++|++.+ |++|++|++|++|+.++++ +.|++.+|++++++ .||+|+|++.+.+|+.+  |   + 
T Consensus       104 ~~~~~~g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad-~vV~A~p~~~~~~ll~~~~~~l~~~  180 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKES-GAEVYFRHRVTQINLRDDK-WEVSKQTGSPEQFD-LIVLTMPVPEILQLQGDITTLISEC  180 (342)
T ss_dssp             EEECTTCTTHHHHHHHHHH-TCEEESSCCEEEEEECSSS-EEEEESSSCCEEES-EEEECSCHHHHTTCBSTHHHHSCHH
T ss_pred             ceecCCCHHHHHHHHHHhc-CCEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcC-EEEECCCHHHHHHHhcccccccCHH
Confidence            4566889999999999987 8999999999999998765 77889899878998 79999999999999976  2   1 


Q ss_pred             ---ccCCCCCcceEEEEEeecCCCC-CCCCCeEEecCCCCcceEEEEeecccCCCCC-CCCceEEEEEecC----CCCCC
Q 042352          314 ---KFQRKPARSTVCLYFSADKDEI-PVQEPVLFLNGSGKGIVNNMFFATNVAPLYG-PLDKALISVSLIG----LFADV  384 (445)
Q Consensus       314 ---~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~-p~g~~~l~~~~~~----~~~~~  384 (445)
                         .+..+.+.++.++++.|+++++ +.+...+.++.  ...+..+++.+.+ |.+. +++...+.++..+    .+.+.
T Consensus       181 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~k-~~r~~~~~~~~~v~~~~~~~~~~~~~~  257 (342)
T 3qj4_A          181 QRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITS--NPCIRFVSIDNKK-RNIESSEIGPSLVIHTTVPFGVTYLEH  257 (342)
T ss_dssp             HHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSS--CSSEEEEEEHHHH-TTCCCC-CCCEEEEEECHHHHHHTTTS
T ss_pred             HHHHHhcCCccccEEEEEEECCCCccCCceeeEEccC--CcceEEEEccccC-CCCCCCCCCceEEEECCHHHHHHhhcC
Confidence               4567889999999999998742 22222222332  1223334455554 4432 3333344444433    25678


Q ss_pred             CChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCcc--cCCCCeeeC
Q 042352          385 MDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKS--EFSLAVYLC  445 (445)
Q Consensus       385 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--t~~~g~~~~  445 (445)
                      +++++.+.++++|++++|....+.|  ....|+.++.|.+..+   .+|...  ...|||+||
T Consensus       258 ~~~~~~~~~~~~l~~~~g~~~~p~~--~~v~rW~~a~p~~~~~---~~~~~~~~~~~~~l~la  315 (342)
T 3qj4_A          258 SIEDVQELVFQQLENILPGLPQPIA--TKCQKWRHSQVTNAAA---NCPGQMTLHHKPFLACG  315 (342)
T ss_dssp             CHHHHHHHHHHHHHHHSCSCCCCSE--EEEEEETTCSBSSCCS---SSCSCEEEETTTEEEEC
T ss_pred             CHHHHHHHHHHHHHHhccCCCCCce--eeeccccccccccccC---CCcceeEecCCccEEEE
Confidence            8999999999999999996544444  4567777888765431   234433  368999998

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.93  E-value=8.9e-25  Score=214.38  Aligned_cols=330  Identities=14%  Similarity=0.162  Sum_probs=198.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-c--------------------CCeeecccccc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-V--------------------DGFLLDRGFQI  103 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~--------------------~g~~~d~G~~~  103 (445)
                      |+..+||+|||||++||++|+.|+++|++|+|+|+++.+||++++++ .                    .++.+|+|+++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~   82 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF   82 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence            45678999999999999999999999999999999999999999987 1                    34677888887


Q ss_pred             hhccChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHH--HHhhhhhhhhhc
Q 042352          104 FITAYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL--LIGLTRIRVLIK  177 (445)
Q Consensus       104 ~~~~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  177 (445)
                      +... ..+.++++++|+.    +.... ..+++.+|+...++....      ..+........++.  ...+..+.....
T Consensus        83 l~~~-~~l~~ll~~lgl~~~l~~~~~~-~~~~~~~g~~~~~p~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~  154 (433)
T 1d5t_A           83 LMAN-GQLVKMLLYTEVTRYLDFKVVE-GSFVYKGGKIYKVPSTET------EALASNLMGMFEKRRFRKFLVFVANFDE  154 (433)
T ss_dssp             EETT-SHHHHHHHHHTGGGGCCEEECC-EEEEEETTEEEECCCSHH------HHHHCSSSCHHHHHHHHHHHHHHHHCCT
T ss_pred             eecc-chHHHHHHHcCCccceEEEEeC-ceEEeeCCEEEECCCCHH------HHhhCcccChhhHHHHHHHHHHHHhhcc
Confidence            6543 4567788887764    22222 233455776665543310      11111222222211  111111111000


Q ss_pred             c---hHHHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhccccc-CCccchHH--HHHHHHHHHh-----hcCCCccccCc
Q 042352          178 T---DEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFF-DKELETSS--RLFDFIFKCL-----ALGDNTIPANG  246 (445)
Q Consensus       178 ~---~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-----~~g~~~~~~gG  246 (445)
                      .   ..........++.+|+++.+.++.. +.++...+ .++. ..+.+.++  .++.+.....     ..+..++|.||
T Consensus       155 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~l-~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~g~~~~~~p~gG  232 (433)
T 1d5t_A          155 NDPKTFEGVDPQNTSMRDVYRKFDLGQDV-IDFTGHAL-ALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYG  232 (433)
T ss_dssp             TCGGGGTTCCTTTSBHHHHHHHTTCCHHH-HHHHHHHT-SCCSSSGGGGSBSHHHHHHHHHHHHSCCSSSCCSEEEETTC
T ss_pred             cCchhccccccccCCHHHHHHHcCCCHHH-HHHHHHHH-HhccCCCccCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCcC
Confidence            0   0011134678999999988776664 44433221 1222 12211111  1222222211     12236689999


Q ss_pred             cccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceE
Q 042352          247 ICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTV  324 (445)
Q Consensus       247 ~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~  324 (445)
                      ++.++++|++.+.  |++|++|++|++|..+++++++|++ +|++++|+ +||+|++++..  .+..   ..  ...+.+
T Consensus       233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad-~VV~a~~~~~~--~~~~---~~--~~~~~~  303 (433)
T 1d5t_A          233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGEVARCK-QLICDPSYVPD--RVRK---AG--QVIRII  303 (433)
T ss_dssp             TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTEEEECS-EEEECGGGCGG--GEEE---EE--EEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCeEEECC-EEEECCCCCcc--cccc---cC--cceeEE
Confidence            9999999998775  9999999999999988776566664 78789998 79999999842  1211   11  122223


Q ss_pred             EEEEeecCCCCCC----CCCeEEecCCC--CcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHH
Q 042352          325 CLYFSADKDEIPV----QEPVLFLNGSG--KGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELS  398 (445)
Q Consensus       325 ~v~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~  398 (445)
                      .+   ++++. ++    .++.++++...  ......+..+| .+|+.+|+|++++.++...+..     +..+.+...++
T Consensus       304 ~i---l~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s-~d~~~aP~G~~~~~~~~~~p~~-----~~~~~l~~~~~  373 (433)
T 1d5t_A          304 CI---LSHPI-KNTNDANSCQIIIPQNQVNRKSDIYVCMIS-YAHNVAAQGKYIAIASTTVETT-----DPEKEVEPALG  373 (433)
T ss_dssp             EE---ESSCC-TTSTTCSSEEEEECGGGTTCSSCEEEEEEE-GGGTSSCTTCEEEEEEEECCSS-----CHHHHTHHHHT
T ss_pred             EE---EcCcc-cccCCCceEEEEeCccccCCCCCEEEEEEC-CCCcccCCCCEEEEEEEecCCC-----CHHHHHHHHHH
Confidence            22   56653 32    34555655421  22455677788 8999999999999877654322     12234555555


Q ss_pred             hHhCC
Q 042352          399 DWFGK  403 (445)
Q Consensus       399 ~~~~~  403 (445)
                      ++.|.
T Consensus       374 ~l~~~  378 (433)
T 1d5t_A          374 LLEPI  378 (433)
T ss_dssp             TTCSC
T ss_pred             HhhhH
Confidence            55443

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.93  E-value=2.5e-24  Score=221.84  Aligned_cols=155  Identities=18%  Similarity=0.181  Sum_probs=112.2

Q ss_pred             CCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCC------CceEEeccEEEEcCChhHHhhh---
Q 042352          238 GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLAN------GETLKSEIGVILAVEEPEADKL---  308 (445)
Q Consensus       238 g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~------g~~i~a~~~VV~a~~~~~~~~l---  308 (445)
                      +.++.+.||++.|+++|++.   .+|++|++|++|..++++ +.|++.+      |++++|+ +||+|+|+.+++++   
T Consensus       391 g~~~~~~gG~~~l~~~La~~---l~I~l~~~V~~I~~~~~~-v~V~~~~~~~~~~~~~~~Ad-~VI~tvP~~vL~~l~~~  465 (662)
T 2z3y_A          391 GSHLTVRNGYSCVPVALAEG---LDIKLNTAVRQVRYTASG-CEVIAVNTRSTSQTFIYKCD-AVLCTLPLGVLKQQPPA  465 (662)
T ss_dssp             SCCEEETTCTTHHHHHHTTT---CEEETTEEEEEEEEETTE-EEEEEEESSCTTCEEEEEES-EEEECCCHHHHHCSSCS
T ss_pred             CceeeecCcHHHHHHHHHhc---CceecCCeEEEEEECCCc-EEEEEeecccCCCCeEEEeC-EEEECCCHHHHhcccCc
Confidence            45678899999999999985   489999999999998765 6777766      5679998 79999999999873   


Q ss_pred             ---cCC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCC--CCcceEEEEeecccCCCCCCCCceEEEEEec
Q 042352          309 ---LRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGS--GKGIVNNMFFATNVAPLYGPLDKALISVSLI  378 (445)
Q Consensus       309 ---l~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~  378 (445)
                         .++ |.    +++.+.+.+..+|++.|+++||+.....+.....  .......+++++.        +..+|..++.
T Consensus       466 i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~--------~~~vL~~~~~  537 (662)
T 2z3y_A          466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY--------KAPILLALVA  537 (662)
T ss_dssp             SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCS--------SSSEEEEEEC
T ss_pred             eEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeCC--------CCCEEEEEec
Confidence               233 32    3556778899999999999997644344332211  1111233444432        2235555554


Q ss_pred             CC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352          379 GL----FADVMDDNLTAEVIRELSDWFGKST  405 (445)
Q Consensus       379 ~~----~~~~~~~e~~~~~~~~l~~~~~~~~  405 (445)
                      +.    +..++++++++.++++|+++||...
T Consensus       538 G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~  568 (662)
T 2z3y_A          538 GEAAGIMENISDDVIVGRCLAILKGIFGSSA  568 (662)
T ss_dssp             THHHHHHTTSCHHHHHHHHHHHHHHHHCTTS
T ss_pred             cHhHHHHHhCCHHHHHHHHHHHHHHHhCCcc
Confidence            43    4578999999999999999998743

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.93  E-value=5.2e-25  Score=211.06  Aligned_cols=292  Identities=13%  Similarity=0.120  Sum_probs=207.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCee-ecccccchhccChhHHHhhcccCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFL-LDRGFQIFITAYPEAQKLLDYNALNLQ  123 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~-~d~G~~~~~~~~~~~~~l~~~lgl~~~  123 (445)
                      ...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|.. ++.|+|++...++.+.+++++++. +.
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~  105 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTE-WR  105 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCC-EE
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhh-cc
Confidence            3568999999999999999999999999999999999999999876 67876 599999998888899999999884 33


Q ss_pred             eecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHH
Q 042352          124 KFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI  203 (445)
Q Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~  203 (445)
                      .......++.+|++..++....    .+..+.......  +....+..  .     ......++.++++|+.+ .+++++
T Consensus       106 ~~~~~~~~~~~g~l~~lP~~~~----~~~~l~~~~~~~--~~~~~~l~--~-----~~~~~~~~~s~~e~~~~-~~G~~~  171 (397)
T 3hdq_A          106 PYQHRVLASVDGQLLPIPINLD----TVNRLYGLNLTS--FQVEEFFA--S-----VAEKVEQVRTSEDVVVS-KVGRDL  171 (397)
T ss_dssp             ECCCBEEEEETTEEEEESCCHH----HHHHHHTCCCCH--HHHHHHHH--H-----HCCCCSSCCBHHHHHHH-HHHHHH
T ss_pred             cccccceEEECCEEEEcCCChH----HHHHhhccCCCH--HHHHHHHh--h-----cccCCCCCcCHHHHHHH-hcCHHH
Confidence            4444556778999888754422    122222211111  11111111  0     11123457899999986 488999


Q ss_pred             HHHhhhhhhcccccCCccchHHHHHHHHHHHhhcC-----CC--ccccCccccHHHHHHhcCCCCcEEeCceeeEEEecC
Q 042352          204 IDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALG-----DN--TIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE  276 (445)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~--~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~  276 (445)
                      ++.++++++.+.|+.++.++++.+...+.......     +.  .+|.||+++++++|++.. |++|++|++|++|    
T Consensus       172 ~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~~-g~~V~l~~~v~~~----  246 (397)
T 3hdq_A          172 YNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSSP-NIKVMLNTDYREI----  246 (397)
T ss_dssp             HHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCST-TEEEEESCCGGGT----
T ss_pred             HHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHHhcc-CCEEEECCeEEec----
Confidence            99999999999999999998876442111000111     11  369999999999999876 8999999999833    


Q ss_pred             CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEE
Q 042352          277 QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMF  356 (445)
Q Consensus       277 ~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (445)
                                +.++.++ +||+|+|++.+...     ...++.+.+...+++.++.+.+ .+..++.+++. . ++.+++
T Consensus       247 ----------~~~~~~d-~vI~T~P~d~~~~~-----~~g~L~yrsl~~~~~~~~~~~~-~~~~~vn~~d~-~-p~tRi~  307 (397)
T 3hdq_A          247 ----------ADFIPFQ-HMIYTGPVDAFFDF-----CYGKLPYRSLEFRHETHDTEQL-LPTGTVNYPND-Y-AYTRVS  307 (397)
T ss_dssp             ----------TTTSCEE-EEEECSCHHHHTTT-----TTCCCCEEEEEEEEEEESSSCS-CSSSEEECSSS-S-SCSEEE
T ss_pred             ----------cccccCC-EEEEcCCHHHHHHH-----hcCCCCCceEEEEEEEeccccC-CCCeEEEeCCC-C-cceEEE
Confidence                      3345687 79999999876432     2335789999999999986653 34556665544 3 777888


Q ss_pred             eecccCCCCCCCCceEEEEEec
Q 042352          357 FATNVAPLYGPLDKALISVSLI  378 (445)
Q Consensus       357 ~~s~~~p~~~p~g~~~l~~~~~  378 (445)
                      ..++. +.. +.++.++..-+.
T Consensus       308 e~k~~-~~~-~~~~t~i~~Ey~  327 (397)
T 3hdq_A          308 EFKHI-TGQ-RHHQTSVVYEYP  327 (397)
T ss_dssp             EHHHH-HCC-CCSSEEEEEEEE
T ss_pred             eeccc-CCC-CCCCEEEEEEEC
Confidence            87765 332 446677665543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.92  E-value=2.1e-24  Score=208.18  Aligned_cols=293  Identities=13%  Similarity=0.115  Sum_probs=202.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc--CCeee-cccccchhccChhHHHhhcccCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV--DGFLL-DRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      .+||+|||||++||++|+.|+++|++|+|+|+++++||++.+...  +|+.+ +.|++++...++.+.+++++++. +.+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~-~~~   81 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAE-MMP   81 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSC-EEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhh-hcc
Confidence            479999999999999999999999999999999999999999877  78775 99999998888999999999885 334


Q ss_pred             ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352          125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII  204 (445)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~  204 (445)
                      ......++.+|+...++....    .+..++..... .++....+..   .....    ..++.++.+|+.+. +++.+.
T Consensus        82 ~~~~~~~~~~g~~~~~P~~~~----~~~~l~~~~~~-~~~~~~~l~~---~~~~~----~~~~~sl~e~~~~~-~g~~~~  148 (384)
T 2bi7_A           82 YVNRVKATVNGQVFSLPINLH----TINQFFSKTCS-PDEARALIAE---KGDST----IADPQTFEEEALRF-IGKELY  148 (384)
T ss_dssp             CCCCEEEEETTEEEEESCCHH----HHHHHTTCCCC-HHHHHHHHHH---HSCCS----CSSCCBHHHHHHHH-HCHHHH
T ss_pred             cccceEEEECCEEEECCCChh----HHHHHhcccCC-HHHHHHHHHH---hhhcc----CCCCcCHHHHHHHh-hcHHHH
Confidence            444456677887776654322    22222222111 1222111111   11111    23578999999875 789999


Q ss_pred             HHhhhhhhcccccCCccchHHHHHHHHH--HHhh----cCCCc-cccCccccHHHHHHhcCCCCcEEeCceee-EEEecC
Q 042352          205 DSFFRPFFGGIFFDKELETSSRLFDFIF--KCLA----LGDNT-IPANGICQIPNQIASKLPFESILLNTRVL-SIDFDE  276 (445)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~g~~~-~~~gG~~~l~~~l~~~l~g~~i~~n~~V~-~I~~~~  276 (445)
                      +.++.|++.+.|+.++.++++.....+.  ..+.    .+.+. +|+||+++++++|++.. |++|++|++|+ +|..  
T Consensus       149 ~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~-g~~I~l~~~V~~~i~~--  225 (384)
T 2bi7_A          149 EAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHE-NIKVDLQREFIVEERT--  225 (384)
T ss_dssp             HHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCST-TEEEEESCCCCGGGGG--
T ss_pred             HHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhcC-CCEEEECCeeehhhhc--
Confidence            9999999999999998887765421000  0000    12222 89999999999999865 78999999999 7752  


Q ss_pred             CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEE
Q 042352          277 QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMF  356 (445)
Q Consensus       277 ~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (445)
                                    .+| +||+|+|++.+.+++-.     .+.+.+...+++.+|...  .+..++.+++. ...+..++
T Consensus       226 --------------~~d-~VI~a~p~~~~~~~~lg-----~l~y~s~~~v~~~~d~~~--~~~~~~n~~~~-~~~~~ri~  282 (384)
T 2bi7_A          226 --------------HYD-HVFYSGPLDAFYGYQYG-----RLGYRTLDFKKFTYQGDY--QGCAVMNYCSV-DVPYTRIT  282 (384)
T ss_dssp             --------------GSS-EEEECSCHHHHTTTTTC-----CCCEEEEEEEEEEEESCS--SSSSEEEECST-TSSSSEEE
T ss_pred             --------------cCC-EEEEcCCHHHHHHhhcC-----CCCcceEEEEEEEeCCCC--CCCEEEEecCC-CCCeeeEE
Confidence                          166 79999999998775422     467888888888887332  23334344432 22344566


Q ss_pred             eecccCCCCCCCCceEEEEEecCCC
Q 042352          357 FATNVAPLYGPLDKALISVSLIGLF  381 (445)
Q Consensus       357 ~~s~~~p~~~p~g~~~l~~~~~~~~  381 (445)
                      +.++..|...+ ++.++...+...|
T Consensus       283 ~~~~~~~~~~~-~~~~v~~e~~~~~  306 (384)
T 2bi7_A          283 EHKYFSPWEQH-DGSVCYKEYSRAC  306 (384)
T ss_dssp             EGGGGCTTSCC-SEEEEEEEEEEEC
T ss_pred             EeeccCCCCCC-CCEEEEEEEeccc
Confidence            66666666653 5566665554433

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.91  E-value=1.5e-24  Score=208.06  Aligned_cols=292  Identities=11%  Similarity=0.113  Sum_probs=200.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeec-ccccchhccChhHHHhhcccCCcceeecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLD-RGFQIFITAYPEAQKLLDYNALNLQKFYS  127 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d-~G~~~~~~~~~~~~~l~~~lgl~~~~~~~  127 (445)
                      +||+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|..++ .|++++...++.+.+++++++. +.+...
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~-~~~~~~   80 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVE-FNRFTN   80 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTSC-BCCCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCCCHHHHHHHHHhhh-hhhccc
Confidence            69999999999999999999999999999999999999999888899885 9999998878888889888775 333444


Q ss_pred             CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHh
Q 042352          128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSF  207 (445)
Q Consensus       128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~  207 (445)
                      ....+.+|+...++...    ..+..++...  ..++....+.   .....   ....++.++.+|+.+. +++++.+.+
T Consensus        81 ~~~~~~~g~~~~~p~~~----~~~~~l~~~~--~~~~~~~~l~---~~~~~---~~~~~~~s~~~~~~~~-~g~~~~~~~  147 (367)
T 1i8t_A           81 SPLAIYKDKLFNLPFNM----NTFHQMWGVK--DPQEAQNIIN---AQKKK---YGDKVPENLEEQAISL-VGEDLYQAL  147 (367)
T ss_dssp             CCEEEETTEEEESSBSH----HHHHHHHCCC--CHHHHHHHHH---HHTTT---TCCCCCCSHHHHHHHH-HHHHHHHHH
T ss_pred             cceEEECCeEEEcCCCH----HHHHHHhccC--CHHHHHHHHH---HHhhc---cCCCCCccHHHHHHHH-HhHHHHHHH
Confidence            45667788877664332    2222222211  1111111111   11111   1123578999999886 889999999


Q ss_pred             hhhhhcccccCCccchHHHHHHHHHHHh--h----cCCCc-cccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcC
Q 042352          208 FRPFFGGIFFDKELETSSRLFDFIFKCL--A----LGDNT-IPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMP  280 (445)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~g~~~-~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~  280 (445)
                      +.|++.+.|+.++.++++.....+...+  .    .+.+. +|+||+++++++|++   |++|++|++|++|...     
T Consensus       148 ~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~---g~~i~l~~~V~~i~~~-----  219 (367)
T 1i8t_A          148 IKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLE---GVDVKLGIDFLKDKDS-----  219 (367)
T ss_dssp             THHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHT---TSEEECSCCGGGSHHH-----
T ss_pred             HHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhc---CCEEEeCCceeeechh-----
Confidence            9999999999999888764321010000  0    11222 899999999999998   5799999999988621     


Q ss_pred             eEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecc
Q 042352          281 NVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATN  360 (445)
Q Consensus       281 ~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  360 (445)
                       |      ++.+| +||+|+|++.+.++.     +..+.+.+...+++.++++.++ +..++.+.+. ...+..+++.++
T Consensus       220 -v------~~~~D-~VV~a~p~~~~~~~~-----l~~l~y~s~~~v~~~~d~~~~~-~~~~~~~~~~-~~~~~ri~~~~~  284 (367)
T 1i8t_A          220 -L------ASKAH-RIIYTGPIDQYFDYR-----FGALEYRSLKFETERHEFPNFQ-GNAVINFTDA-NVPYTRIIEHKH  284 (367)
T ss_dssp             -H------HTTEE-EEEECSCHHHHTTTT-----TCCCCEEEEEEEEEEESSSCSS-SSSEEEECCT-TSSCSEEEEGGG
T ss_pred             -h------hccCC-EEEEeccHHHHHHHh-----hCCCCCceEEEEEEEeccccCC-CCeEEEeCCC-CCceeeEEeecc
Confidence             1      13577 799999999876542     3357888989999999877543 3444455432 223456666666


Q ss_pred             cCCCCCCCCceEEEEEecC
Q 042352          361 VAPLYGPLDKALISVSLIG  379 (445)
Q Consensus       361 ~~p~~~p~g~~~l~~~~~~  379 (445)
                      ..|.  +.+++++..-+..
T Consensus       285 ~~~~--~~~~~~v~~e~~~  301 (367)
T 1i8t_A          285 FDYV--ETKHTVVTKEYPL  301 (367)
T ss_dssp             GSCC--CCSCEEEEEEEEE
T ss_pred             cCCC--CCCCEEEEEEEec
Confidence            6554  3345666544433

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.91  E-value=3.1e-23  Score=215.03  Aligned_cols=332  Identities=21%  Similarity=0.250  Sum_probs=193.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-CCeeecccccchhccC-hhHHHhhcccCCcc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAY-PEAQKLLDYNALNL  122 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~-~~~~~l~~~lgl~~  122 (445)
                      .+..+||+|||||++||+||+.|++.|++|+|+|+++++||++.+... +|..+|.|++++.+.. ..+..+++++|+..
T Consensus       333 ~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~  412 (776)
T 4gut_A          333 DYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISM  412 (776)
T ss_dssp             GGTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCcc
Confidence            345689999999999999999999999999999999999999998754 6899999999887643 35667888888876


Q ss_pred             eeecCCcEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHH--------HH
Q 042352          123 QKFYSGAKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPII--------EL  193 (445)
Q Consensus       123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------~~  193 (445)
                      ........++. +|.....     ........       ....+......+...  .    ....+.++.        ++
T Consensus       413 ~~~~~~~~l~~~~g~~~~~-----~~~~~~~~-------~~~~ll~~~~~~~~~--~----~~~~d~sl~~~~~~~~~~~  474 (776)
T 4gut_A          413 HKFGERCDLIQEGGRITDP-----TIDKRMDF-------HFNALLDVVSEWRKD--K----TQLQDVPLGEKIEEIYKAF  474 (776)
T ss_dssp             EECCSCCCEECTTSCBCCH-----HHHHHHHH-------HHHHHHHHHHHHGGG--C----CGGGCCBHHHHHHHHHHHH
T ss_pred             cccccccceEccCCcccch-----hHHHHHHH-------HHHHHHHHHHHHhhc--c----cccccccHHHHHHHHHHHH
Confidence            55433322222 2222100     00000000       000110000010000  0    001122333        33


Q ss_pred             HHHcCCCHHHHH----HhhhhhhcccccCCccchHHHHHHHH-HHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCce
Q 042352          194 LRNIGFSDSIID----SFFRPFFGGIFFDKELETSSRLFDFI-FKCLALGDNTIPANGICQIPNQIASKLPFESILLNTR  268 (445)
Q Consensus       194 l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~  268 (445)
                      ++..++......    .+..+.+....+......+...+... ......+....+.+|++.++++|++   |++|++|++
T Consensus       475 l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~~~G~~~l~~aLa~---gl~I~l~t~  551 (776)
T 4gut_A          475 IKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAE---GLDIQLKSP  551 (776)
T ss_dssp             HHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEECTTCTHHHHHHHHT---TSCEESSCC
T ss_pred             HHhcCCCccchhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCeEEECChHHHHHHHHHh---CCcEEcCCe
Confidence            333332211000    00000000001111111110000000 0000123455678999999999987   568999999


Q ss_pred             eeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh----hcCC-Cc----ccCCCCCcceEEEEEeecCCCCCC--
Q 042352          269 VLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK----LLRQ-PV----KFQRKPARSTVCLYFSADKDEIPV--  337 (445)
Q Consensus       269 V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~----ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~--  337 (445)
                      |++|+.++++ +.|++.+|++++|+ +||+|+|+..+.+    +.++ |+    ++..+.+.+..++++.|+++||..  
T Consensus       552 V~~I~~~~~~-v~V~~~~G~~i~Ad-~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~  629 (776)
T 4gut_A          552 VQCIDYSGDE-VQVTTTDGTGYSAQ-KVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKV  629 (776)
T ss_dssp             EEEEECSSSS-EEEEETTCCEEEES-EEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHH
T ss_pred             eEEEEEcCCE-EEEEECCCcEEEcC-EEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccC
Confidence            9999988766 77899999889998 7999999999865    2222 32    344566778899999999998642  


Q ss_pred             -CCCeEE-ecCCC-CcceEEEEeecccCCCCCCCC-ceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352          338 -QEPVLF-LNGSG-KGIVNNMFFATNVAPLYGPLD-KALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST  405 (445)
Q Consensus       338 -~~~~~~-~~~~~-~~~~~~~~~~s~~~p~~~p~g-~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~  405 (445)
                       ....+. +.... ...+..+++++      .|+| ..+|..++.+.    +.+++++++++.++++|+++||...
T Consensus       630 ~g~~~fG~l~~~~~~~~~~~~~~d~------~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~  699 (776)
T 4gut_A          630 QGADFFGHVPPSASKRGLFAVFYDM------DPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQE  699 (776)
T ss_dssp             TTCSEEEECCSSGGGTTEEEEEEES------CTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSC
T ss_pred             CCCceEEeecCCcCCCceEEEEecC------CCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCccc
Confidence             122322 22111 11233344432      2333 35666555543    4678999999999999999998643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.90  E-value=5.4e-23  Score=200.76  Aligned_cols=250  Identities=16%  Similarity=0.228  Sum_probs=162.0

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--------------------Ceeecccccc
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--------------------GFLLDRGFQI  103 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~  103 (445)
                      ++++.+||+|||||++|+++|+.|+++|++|+|+|+++.+||++.+++.+                    +|.+|+++++
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~   95 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKF   95 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCB
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeE
Confidence            35567999999999999999999999999999999999999999987532                    4678888887


Q ss_pred             hhccChhHHHhhcccCCc----ceeecCCcEEEe---------CCeeEeccCCccchHHHHHhhcCCccchHHHHHHh--
Q 042352          104 FITAYPEAQKLLDYNALN----LQKFYSGAKVYY---------NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIG--  168 (445)
Q Consensus       104 ~~~~~~~~~~l~~~lgl~----~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  168 (445)
                      +.. ...+.+++.+.++.    ++.... .+++.         +|+..+++..      ....+..+..++.++....  
T Consensus        96 l~~-~g~L~~lL~~~gv~~ylef~~~~~-~y~~~~~~~~~~~~~g~~~~VPss------~~e~~~~~lLs~~eK~~l~kF  167 (475)
T 3p1w_A           96 ILV-GGNLVKILKKTRVTNYLEWLVVEG-SYVYQHQKKGFLTSEKFIHKVPAT------DMEALVSPLLSLMEKNRCKNF  167 (475)
T ss_dssp             EET-TSHHHHHHHHTTCGGGSCEEECSE-EEEEEEECCCSSSCCEEEEECCCS------HHHHHTCTTSCHHHHHHHHHH
T ss_pred             eec-CcHHHHHHHHCCchheeEEEecCc-ceEEecCccccccCCCceEeCCCC------HHHHhhccCCCHHHHHHHHHH
Confidence            643 44667777666653    333322 22222         3445544332      2223344555666655421  


Q ss_pred             hhhhhhhhcchH-HH--hcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchH-----HHHHHHH--HHHhhcC
Q 042352          169 LTRIRVLIKTDE-QI--LTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETS-----SRLFDFI--FKCLALG  238 (445)
Q Consensus       169 ~~~~~~~~~~~~-~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~g  238 (445)
                      +........... .+  ...+..++.+|+++.++++.....+..++.-... .+..+.+     ..+..+.  +..+...
T Consensus       168 L~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~-~~~~~~~a~~~l~ri~~y~~Sl~~yg~s  246 (475)
T 3p1w_A          168 YQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLN-DDYLKQPAYLTLERIKLYMQSISAFGKS  246 (475)
T ss_dssp             HHHHHHCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGGGGSBHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHhhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCcccCCHHHHHHHHHHHHHHHhhcCCC
Confidence            111111101100 11  1235789999999999988866544333221111 1111111     1222222  2233334


Q ss_pred             CCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEe-cCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          239 DNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDF-DEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       239 ~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~-~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      ...+|.||++.|+++|++.+.  |++|++|++|++|.. +++++++|++.+|++++|+ +||++++..
T Consensus       247 ~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad-~VI~a~~~~  313 (475)
T 3p1w_A          247 PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCD-KVICDPSYV  313 (475)
T ss_dssp             SEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEE-EEEECGGGC
T ss_pred             ceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECC-EEEECCCcc
Confidence            678999999999999998775  999999999999998 6666789999999889998 699998765

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.88  E-value=2.1e-23  Score=211.80  Aligned_cols=352  Identities=13%  Similarity=0.062  Sum_probs=192.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--------CCEEEEecCC-CC----------------Ccceeeecc-------CCe
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG--------RPFVLLEASD-AV----------------GGRVRTDSV-------DGF   95 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G--------~~V~vlE~~~-~~----------------GG~~~s~~~-------~g~   95 (445)
                      .++|+|||||++||+||+.|+++|        ++|+|+|+++ ++                ||++.+...       ++.
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~  135 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDT  135 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCc
Confidence            468999999999999999999998        9999999999 99                999999866       458


Q ss_pred             eecccccchhccChhHHHhhccc-CCc--ceeec----CCcEE-------EeCCee-EeccCCc---cchHHHHHhh---
Q 042352           96 LLDRGFQIFITAYPEAQKLLDYN-ALN--LQKFY----SGAKV-------YYNGQF-HTVADPF---RHFWDSIKSL---  154 (445)
Q Consensus        96 ~~d~G~~~~~~~~~~~~~l~~~l-gl~--~~~~~----~~~~~-------~~~g~~-~~~~~~~---~~~~~~~~~~---  154 (445)
                      .+|+|++++...++.+.++++++ |++  ...+.    ....+       +++|.. ..+.+..   +.....+...   
T Consensus       136 ~~e~G~~~~~~~~~~~~~~~~~l~gl~~~~~~~~~~~~~~~~i~~~~~i~~~~g~~~~~~~~~~~p~p~~~~~v~~~~~~  215 (721)
T 3ayj_A          136 IYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPTEFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVG  215 (721)
T ss_dssp             EEECSCCCEETTCHHHHHHHHHHHCTTCBCCBCCCBTTBCEEEEETTEEEEESSSCGGGBSSTTCHHHHHHHHHHHHHTC
T ss_pred             EEecCCEEecCccHHHHHHHHHhcCCcccccccccCCCCceEEEecCceeeecCccceecccccccCHHHHHHHHHHHHH
Confidence            99999999988888889999998 885  22221    12334       344433 2222111   1111111110   


Q ss_pred             -cCC--c-----c--ch--HHHHHH-h------hhhhhh-----h---------hcchHHH--hcCCCCcH---HHHHHH
Q 042352          155 -ANP--I-----G--SV--LDKLLI-G------LTRIRV-----L---------IKTDEQI--LTSSEVPI---IELLRN  196 (445)
Q Consensus       155 -~~~--~-----~--~~--~~~~~~-~------~~~~~~-----~---------~~~~~~~--~~~~~~s~---~~~l~~  196 (445)
                       ...  .     .  .-  .+.+.. .      +..+..     .         ......+  .++++.|+   .+|++.
T Consensus       216 ~~~e~~~~~~~~~~~~p~~v~~ll~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~w~~lla~~~d~~S~~~~~~~L~~  295 (721)
T 3ayj_A          216 NPQGENVAMYPIANVDPAKIAAILNAATPPADALERIQTKYWPEFIAQYDGLTLGAAVREIVTVAFEKGTLPPVDGVLDV  295 (721)
T ss_dssp             CSSSSCCCSSCBTTBCHHHHHHHHTCSSCCHHHHHHHHHTHHHHHHHHHTTBBHHHHHHHHHHHHHHHTSSCCGGGTSCH
T ss_pred             HhhhcccccccccccchhhHHHHHHhhhcchhhhhhhhhhhhhhhhhhhccchhhhHHHHHHHHhhcccchhHHHHHHHh
Confidence             000  0     0  00  000000 0      000000     0         0000000  12233344   444422


Q ss_pred             c-CCCHHHHHHhhhhhhccccc-CCccchHHH-HHHHHHHHhhcCCCccccCccccHHHHHHhcC-CCCcEEeCceee--
Q 042352          197 I-GFSDSIIDSFFRPFFGGIFF-DKELETSSR-LFDFIFKCLALGDNTIPANGICQIPNQIASKL-PFESILLNTRVL--  270 (445)
Q Consensus       197 ~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l-~g~~i~~n~~V~--  270 (445)
                      . .++  .....+..+..+..+ .+....+.. .+..... .....++.+.||+++|+++|++.+ +|+.|++|++|+  
T Consensus       296 ~~~~s--~~~~~~~~~~~~~gg~~~~~~~S~le~L~~~~~-~~~~~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~  372 (721)
T 3ayj_A          296 DESIS--YYVELFGRFGFGTGGFKPLYNISLVEMMRLILW-DYSNEYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQE  372 (721)
T ss_dssp             HHHHH--HHHHHHHHHCSSSSCCGGGTTBBHHHHHHHHHT-TTTCEECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECE
T ss_pred             ccccH--HHHHHHHHHhhccCCCCCccchhHHHHHHHHhc-CCccceeEECCcHHHHHHHHHHhcccCCceEeCCEEEee
Confidence            0 111  111222222111111 111122211 1111111 112346789999999999999987 357899999999  


Q ss_pred             EEEecCCC------cCeE-EeCCCc--eEEeccEEEEcCChhHHhh------hc-----------------------CC-
Q 042352          271 SIDFDEQN------MPNV-RLANGE--TLKSEIGVILAVEEPEADK------LL-----------------------RQ-  311 (445)
Q Consensus       271 ~I~~~~~~------~~~V-~~~~g~--~i~a~~~VV~a~~~~~~~~------ll-----------------------~~-  311 (445)
                      +|..++++      .+.| ...+|+  +++|| +||+|+|+..+..      +-                       ++ 
T Consensus       373 ~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD-~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ppl  451 (721)
T 3ayj_A          373 RVANACHSGTASARAQLLSYDSHNAVHSEAYD-FVILAVPHDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPL  451 (721)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTCCEEEEEES-EEEECSCHHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSS
T ss_pred             eEEECCCCCccccceEEEEEecCCceEEEEcC-EEEECCCHHHHhhccccccccccccccccccccccccccccccCCcc
Confidence            99987544      2666 445676  68898 7999999988743      21                       11 


Q ss_pred             --C-------c----ccCCCCCcceEEEEEee-----cCCCCCCCCC-eEEecCCCCcceEEE-EeecccCCCCCCCCce
Q 042352          312 --P-------V----KFQRKPARSTVCLYFSA-----DKDEIPVQEP-VLFLNGSGKGIVNNM-FFATNVAPLYGPLDKA  371 (445)
Q Consensus       312 --p-------~----~~~~~~~~~~~~v~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~s~~~p~~~p~g~~  371 (445)
                        |       .    +++...+....|+++.|     +++||..... .+....++ ..+..+ ++|+-...+..+++..
T Consensus       452 Llp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~~g~~i~~s~TD-~~~r~~~~~p~p~~~d~~~~~~g  530 (721)
T 3ayj_A          452 LLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQWRGEPIKAVVSD-SGLAASYVVPSPIVEDGQAPEYS  530 (721)
T ss_dssp             CCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEETTEECCEEEET-TTTEEEEEEECSCC----CCSEE
T ss_pred             cCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccccCCCCceeeecC-CCcceEEEeccCcccccCCCCCc
Confidence              2       2    45678899999999999     8998754311 11111111 122222 2232110112344444


Q ss_pred             EEEEE-ecCC----C------CCCCChHH-------HHHHHHHHH--hHhCCC
Q 042352          372 LISVS-LIGL----F------ADVMDDNL-------TAEVIRELS--DWFGKS  404 (445)
Q Consensus       372 ~l~~~-~~~~----~------~~~~~~e~-------~~~~~~~l~--~~~~~~  404 (445)
                      ++.++ ..++    +      ..+++++.       ++.++++|.  +++|+.
T Consensus       531 vlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~~~~p~~  583 (721)
T 3ayj_A          531 SLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGA  583 (721)
T ss_dssp             EEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCEECCTTC
T ss_pred             EEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhhccCccc
Confidence            44443 3322    3      34455555       999999999  898863

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.87  E-value=4e-21  Score=182.56  Aligned_cols=245  Identities=19%  Similarity=0.227  Sum_probs=143.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcceeeec----------cCCeeecccccchhccChhHHHh
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGRVRTDS----------VDGFLLDRGFQIFITAYPEAQKL  114 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s~~----------~~g~~~d~G~~~~~~~~~~~~~l  114 (445)
                      ...+||+|||||++||+||+.|+++|++|+|+|++ +++||++.+..          .+++.+|.|++++...++.+.++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~  121 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLAL  121 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHH
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHH
Confidence            45689999999999999999999999999999999 99999999987          35789999999988778889999


Q ss_pred             hcccCCcceeecC--------------------------------------------CcEEEeCCeeEeccCCccchHHH
Q 042352          115 LDYNALNLQKFYS--------------------------------------------GAKVYYNGQFHTVADPFRHFWDS  150 (445)
Q Consensus       115 ~~~lgl~~~~~~~--------------------------------------------~~~~~~~g~~~~~~~~~~~~~~~  150 (445)
                      ++++|+....+..                                            ...++.+|....... .......
T Consensus       122 ~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~~-~~~~~~~  200 (376)
T 2e1m_A          122 IDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQ-YATDPSS  200 (376)
T ss_dssp             HHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHHH-HHHCTHH
T ss_pred             HHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecccc-cccCHHH
Confidence            9999987654321                                            123333443221100 0000000


Q ss_pred             HHhhcCC-c----cchHHHHHHhhhhhhhhh------------------cch-HHHhcCCCCcHHHHHH-HcCCCHHHHH
Q 042352          151 IKSLANP-I----GSVLDKLLIGLTRIRVLI------------------KTD-EQILTSSEVPIIELLR-NIGFSDSIID  205 (445)
Q Consensus       151 ~~~~~~~-~----~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~s~~~~l~-~~~~~~~~~~  205 (445)
                      +...... .    ....+.+...+..+....                  ... .....++..|+.+||+ +.+++....+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~S~~~~L~~~~g~s~~~~~  280 (376)
T 2e1m_A          201 INEGFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYAEFSDEAVE  280 (376)
T ss_dssp             HHHHTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHHHHHTTCBHHHHHHHTSCCCHHHHH
T ss_pred             hccccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhhccchHHHHHHhCCCHHHHHhhccCCCHHHHH
Confidence            0000000 0    001111111111111100                  001 1123468899999998 7888877655


Q ss_pred             HhhhhhhcccccCCccchHHHHHHHHHHH--h-hcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeE
Q 042352          206 SFFRPFFGGIFFDKELETSSRLFDFIFKC--L-ALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNV  282 (445)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V  282 (445)
                      .+ ..+.  .+... ...+  ++..+...  + ....++.+.||+++|+++|++.+ +.+|++|++|++|..+++++. |
T Consensus       281 ~~-~~~~--~~~~~-~~~s--~l~~l~~~~~~~~~~~~~~i~GG~~~l~~~l~~~l-~~~i~l~~~V~~I~~~~~gv~-v  352 (376)
T 2e1m_A          281 AI-GTIE--NMTSR-LHLA--FFHSFLGRSDIDPRATYWEIEGGSRMLPETLAKDL-RDQIVMGQRMVRLEYYDPGRD-G  352 (376)
T ss_dssp             HH-HHHT--TCTTT-TTSB--HHHHHHHCSCSCTTCCEEEETTCTTHHHHHHHHHG-GGTEECSEEEEEEEECCCC----
T ss_pred             HH-Hhhc--Ccccc-chhh--HHHHHHHhhhhccCCceEEECCcHHHHHHHHHHhc-CCcEEecCeEEEEEECCCceE-E
Confidence            44 2222  11111 1111  11111111  1 22457789999999999999999 679999999999999887643 3


Q ss_pred             EeCCCceEEeccEEEEcC
Q 042352          283 RLANGETLKSEIGVILAV  300 (445)
Q Consensus       283 ~~~~g~~i~a~~~VV~a~  300 (445)
                      ...+....... +|.+.+
T Consensus       353 ~~~~~~~~~g~-~~~~~~  369 (376)
T 2e1m_A          353 HHGELTGPGGP-AVAIQT  369 (376)
T ss_dssp             ----------C-CEEEEE
T ss_pred             EeCCCcCCCCC-eeEEEe
Confidence            33322223455 466554

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.85  E-value=1e-18  Score=175.33  Aligned_cols=186  Identities=11%  Similarity=0.062  Sum_probs=114.9

Q ss_pred             HhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHH---HHHHHHH--hhcCCCccccCccccHHHHHHh
Q 042352          182 ILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRL---FDFIFKC--LALGDNTIPANGICQIPNQIAS  256 (445)
Q Consensus       182 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~g~~~~~~gG~~~l~~~l~~  256 (445)
                      +..++..++.+|+++.++++... .++...+ +++..........+   ..++...  +..+++.+|.||++.|+++|++
T Consensus       309 ~~~~d~~S~~d~L~~~~ls~~L~-~~L~~~l-al~~~~~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~g~L~qaL~r  386 (650)
T 1vg0_A          309 YRAYEGTTFSEYLKTQKLTPNLQ-YFVLHSI-AMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCR  386 (650)
T ss_dssp             HHTTTTSBHHHHHTTSSSCHHHH-HHHHHHT-TC--CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHH
T ss_pred             HhhhccCCHHHHHHHhCCCHHHH-HHHHHHH-hccCCCCCchhHHHHHHHHHHHHHHhhccCceEEeCCchhHHHHHHHH
Confidence            34567899999999987777644 4433222 33322211111111   1111111  2224788999999999999988


Q ss_pred             cCC--CCcEEeCceeeEEEecC--CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecC
Q 042352          257 KLP--FESILLNTRVLSIDFDE--QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADK  332 (445)
Q Consensus       257 ~l~--g~~i~~n~~V~~I~~~~--~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~  332 (445)
                      .+.  |++|++|++|++|..++  +++++|+..+|++++|+ +||++.  ..+    +. .......+....++.+.+++
T Consensus       387 ~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~-~VVs~~--~~l----p~-~~~~~~~~~~v~R~i~i~~~  458 (650)
T 1vg0_A          387 MCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISK-HFIIED--SYL----SE-NTCSRVQYRQISRAVLITDG  458 (650)
T ss_dssp             HHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECS-EEEEEG--GGB----CT-TTTTTCCCEEEEEEEEEESS
T ss_pred             HHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcC-EEEECh--hhc----CH-hHhccccccceEEEEEEecC
Confidence            775  99999999999999887  66778888889999998 688722  222    11 11111223456777777777


Q ss_pred             CCCCCC----CCeEEecCCC-CcceEEEEeecccCCCCCCCCceEEEEEec
Q 042352          333 DEIPVQ----EPVLFLNGSG-KGIVNNMFFATNVAPLYGPLDKALISVSLI  378 (445)
Q Consensus       333 ~~~~~~----~~~~~~~~~~-~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~  378 (445)
                      +..+..    ...+.++... ......++.+|. +++.+|+|++++.+...
T Consensus       459 pi~~~~~~~~~~~iiiP~~~g~~~~V~i~~~Ss-~~~~cP~G~~Vv~lst~  508 (650)
T 1vg0_A          459 SVLRTDADQQVSILTVPAEEPGSFAVRVIELCS-STMTCMKGTYLVHLTCM  508 (650)
T ss_dssp             CSSCCSCCCCCEEEEECCSSTTSCCEEEEEECG-GGTSSCTTCEEEEEEEE
T ss_pred             CCCCcCCCcceEEEEccCccCCCCCEEEEEeCC-CCCCCCCCCEEEEEEee
Confidence            742221    1233344332 223445667776 77899999999887653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.58  E-value=7e-14  Score=137.41  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=47.0

Q ss_pred             cHHHHHHhcCC--CCcEEeCc---eeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcC
Q 042352          249 QIPNQIASKLP--FESILLNT---RVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLR  310 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~---~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~  310 (445)
                      .+.++|.+.+.  |++|++++   +|++|..+++++++|++.+|++++|+ .||+|++.+. .+|++
T Consensus       162 ~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad-~VV~AtG~~s-~~l~~  226 (438)
T 3dje_A          162 NALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAE-RTFLCAGASA-GQFLD  226 (438)
T ss_dssp             HHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECS-EEEECCGGGG-GGTSC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECC-EEEECCCCCh-hhhcC
Confidence            44455554442  99999999   99999988777667999999889998 7999999985 34443

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.58  E-value=1.1e-13  Score=132.65  Aligned_cols=55  Identities=11%  Similarity=0.054  Sum_probs=43.7

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~~  304 (445)
                      .+.++|.+.+.  |++|+++++|++|+.++++.+.|.+.+|+  +++|+ .||+|++.+.
T Consensus       151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~-~VV~A~G~~s  209 (369)
T 3dme_A          151 ALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCR-VLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEE-EEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeC-EEEECCCcch
Confidence            34445544442  99999999999999987766778888883  79998 7999999985

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.49  E-value=1e-13  Score=133.41  Aligned_cols=53  Identities=15%  Similarity=0.100  Sum_probs=42.7

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+.++|.+.+.  |++|+++++|++|+.++++ +.|++.+| +++|+ .||+|++.+.
T Consensus       155 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~-~VV~A~G~~s  209 (381)
T 3nyc_A          155 ALHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAA-VLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSSE-EEEES-EEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcC-EEEECCChhH
Confidence            44455554442  9999999999999988765 78888888 79998 7999999985

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.43  E-value=5.2e-13  Score=138.20  Aligned_cols=54  Identities=9%  Similarity=0.040  Sum_probs=44.1

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+.++|.+.+.  |++|+++++|++|..++++ +.|++.+|++++|+ .||+|++.+.
T Consensus       418 ~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~i~Ad-~VVlAtG~~s  473 (676)
T 3ps9_A          418 ELTRNVLELAQQQGLQIYYQYQLQNFSRKDDC-WLLNFAGDQQATHS-VVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEES-EEEECCGGGG
T ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCe-EEEEECCCCEEECC-EEEECCCcch
Confidence            45555554442  9999999999999998766 68899888889998 7999999984

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.40  E-value=1.1e-12  Score=135.99  Aligned_cols=55  Identities=7%  Similarity=0.028  Sum_probs=43.5

Q ss_pred             ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc-eEEeccEEEEcCChhH
Q 042352          248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE-TLKSEIGVILAVEEPE  304 (445)
Q Consensus       248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~-~i~a~~~VV~a~~~~~  304 (445)
                      ..+.++|.+.+.  |++|+++++|++|+.++++ +.|++.+|+ +++|+ .||+|++.+.
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~~i~Ad-~VVlAtG~~s  469 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-WQLTFGQSQAAKHHA-TVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-EEEEEC-CCCCEEES-EEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-EEEEeCCCcEEEECC-EEEECCCcch
Confidence            345555555442  9999999999999998776 788888887 79998 7999999984

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.39  E-value=3.5e-13  Score=123.68  Aligned_cols=65  Identities=32%  Similarity=0.477  Sum_probs=58.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHH
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQ  112 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~  112 (445)
                      .+||+|||||++||+||+.|+++|++|+||||++.+||++.+...++..+|+|.+.+......+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~~~~~~~   66 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFA   66 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccccCcHHHH
Confidence            48999999999999999999999999999999999999999999999999999987755444443

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.38  E-value=4.2e-13  Score=130.19  Aligned_cols=42  Identities=31%  Similarity=0.610  Sum_probs=37.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +..+||+|||||++||+||+.|+++|++|+|+|+++.+|+..
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~   66 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKI   66 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence            456899999999999999999999999999999999988755

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.38  E-value=1.2e-12  Score=126.14  Aligned_cols=54  Identities=19%  Similarity=0.175  Sum_probs=42.0

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+.+.|.+.+.  |++|+.+++|++|+.+++++++|++.+| +++|+ .||+|++.+.
T Consensus       150 ~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~-~VV~A~G~~s  205 (382)
T 1y56_B          150 EATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTG-IVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECS-EEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECC-EEEECcchhH
Confidence            34444444332  9999999999999988766555888888 79998 7999999985

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.36  E-value=1.1e-12  Score=128.89  Aligned_cols=56  Identities=25%  Similarity=0.357  Sum_probs=44.6

Q ss_pred             ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      ..+.+.|.+.+.  |++|+++++|++|..+++++++|++.+|++++|+ .||+|++.+.
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad-~VVlAtGg~s  191 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN-HVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS-CEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECC-EEEECCCCCc
Confidence            345555555443  9999999999999987666688999999779998 6999999865

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.35  E-value=4.3e-12  Score=123.21  Aligned_cols=54  Identities=22%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+.+.|.+.+.  |++|+.+++|++|..+++++++|++.+| +++|+ .||+|++.+.
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~-~vV~a~G~~s  230 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAG-KVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEE-EEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECC-EEEECCchhH
Confidence            44455554442  9999999999999988766678888888 78998 7999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.31  E-value=1e-11  Score=119.16  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=44.1

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ  311 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~  311 (445)
                      .+.++|.+.+.  |++|+.+++|++|+.++++ +.|++.+| +++|+ .||+|++.+. .+|+++
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~a~-~vV~a~G~~s-~~l~~~  210 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG-VTIETADG-EYQAK-KAIVCAGTWV-KDLLPE  210 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSC-EEEEE-EEEECCGGGG-GGTSTT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE-EEEEECCC-eEEcC-EEEEcCCccH-Hhhccc
Confidence            34444444332  8999999999999987765 67888887 58998 7999999985 455543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.27  E-value=8e-12  Score=123.03  Aligned_cols=39  Identities=33%  Similarity=0.486  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG   85 (445)
                      .++||+|||||++|+++|+.|+++| ++|+|+|++..+|+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~   61 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGS   61 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCC
Confidence            5689999999999999999999999 99999999555554

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.27  E-value=1.3e-10  Score=117.32  Aligned_cols=41  Identities=27%  Similarity=0.422  Sum_probs=37.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+++..||..
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS   57 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTS   57 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCcc
Confidence            46999999999999999999999999999999998777654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.27  E-value=1.4e-11  Score=118.49  Aligned_cols=41  Identities=29%  Similarity=0.455  Sum_probs=36.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      .+.++||+|||||++|+++|+.|+++|++|+|+|++...+|
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            34568999999999999999999999999999999876554

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.27  E-value=2.9e-11  Score=117.06  Aligned_cols=38  Identities=29%  Similarity=0.471  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+||+|||||++||++|+.|+++|++|+|+||++..+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            35799999999999999999999999999999987765

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.25  E-value=1.6e-11  Score=118.71  Aligned_cols=42  Identities=29%  Similarity=0.574  Sum_probs=38.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      |+.+||+|||||++|++||+.|+++|.+|+|+|+++.+|+..
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~   43 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhc
Confidence            446899999999999999999999999999999999887654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.24  E-value=1e-10  Score=116.90  Aligned_cols=41  Identities=32%  Similarity=0.524  Sum_probs=38.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.|+++|++|+|+||.+.+||.+
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s   80 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGAT   80 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            46899999999999999999999999999999999999865

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.23  E-value=5.2e-11  Score=126.03  Aligned_cols=54  Identities=13%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+.++|.+.+.  |++|+.+++|++|+.+++++++|.+.+| +++|+ .||+|++.+.
T Consensus       152 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad-~VV~AaG~~s  207 (830)
T 1pj5_A          152 RAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPAD-IVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECS-EEEECCGGGH
T ss_pred             HHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECC-EEEECCccch
Confidence            44555554443  9999999999999988766667888888 79998 7999999986

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.22  E-value=7.4e-11  Score=117.62  Aligned_cols=54  Identities=28%  Similarity=0.434  Sum_probs=43.9

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      +.+.|.+.+.  |++|+++++|++|..+++++++|++.+|+++.|+ .||+|++.+.
T Consensus       222 l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad-~VVlA~G~~s  277 (549)
T 3nlc_A          222 MIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR-HVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECS-CEEECCCTTC
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECC-EEEECCCCCh
Confidence            3444443332  9999999999999998777778999999899998 6999999975

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.21  E-value=1.6e-11  Score=119.33  Aligned_cols=58  Identities=14%  Similarity=0.179  Sum_probs=43.6

Q ss_pred             HHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-Hhhhc
Q 042352          250 IPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLL  309 (445)
Q Consensus       250 l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll  309 (445)
                      +.+.|.+.++.++|+++++|++|+.++++ +.|++.+|++++|+ .||.|.+.+. +.+.+
T Consensus       129 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~-~vV~AdG~~S~vr~~l  187 (407)
T 3rp8_A          129 LQREMLDYWGRDSVQFGKRVTRCEEDADG-VTVWFTDGSSASGD-LLIAADGSHSALRPWV  187 (407)
T ss_dssp             HHHHHHHHHCGGGEEESCCEEEEEEETTE-EEEEETTSCEEEES-EEEECCCTTCSSHHHH
T ss_pred             HHHHHHHhCCcCEEEECCEEEEEEecCCc-EEEEEcCCCEEeeC-EEEECCCcChHHHHHh
Confidence            33344443323699999999999988765 77889999999998 7999999875 34444

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.20  E-value=7.7e-11  Score=113.62  Aligned_cols=53  Identities=17%  Similarity=0.219  Sum_probs=41.2

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      .+.+.|.+.+.  |++|+.+++|++|+.++++ +.|++.+| +++|+ .||+|++.+.
T Consensus       151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~-~vV~A~G~~~  205 (389)
T 2gf3_A          151 NCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTAD-KLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEE-EEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-EEEEeCCC-EEEeC-EEEEecCccH
Confidence            44444544442  9999999999999987765 66888776 79998 7999999985

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.14  E-value=2.7e-10  Score=110.17  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=44.2

Q ss_pred             HHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352          252 NQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR  310 (445)
Q Consensus       252 ~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~  310 (445)
                      +.|.+.++|++|+++++|++|+.++++ +.|++.+|++++++ .||.|.+.+.. .+.+.
T Consensus       103 ~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vV~AdG~~S~vr~~~~  160 (397)
T 2vou_A          103 GGLYELFGPERYHTSKCLVGLSQDSET-VQMRFSDGTKAEAN-WVIGADGGASVVRKRLL  160 (397)
T ss_dssp             HHHHHHHCSTTEETTCCEEEEEECSSC-EEEEETTSCEEEES-EEEECCCTTCHHHHHHH
T ss_pred             HHHHHhCCCcEEEcCCEEEEEEecCCE-EEEEECCCCEEECC-EEEECCCcchhHHHHhc
Confidence            344443447899999999999988765 67889999889998 79999999753 44444

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.12  E-value=6.7e-11  Score=119.72  Aligned_cols=41  Identities=29%  Similarity=0.536  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.|+++|.+|+||||.+.+||..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s  160 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS  160 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            46899999999999999999999999999999999998754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.12  E-value=6.4e-10  Score=112.69  Aligned_cols=42  Identities=31%  Similarity=0.575  Sum_probs=38.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++||+||+.|+++|++|+||||.+.+||...
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~  166 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK  166 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence            368999999999999999999999999999999999988653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.12  E-value=5.5e-10  Score=108.06  Aligned_cols=60  Identities=12%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352          249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR  310 (445)
Q Consensus       249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~  310 (445)
                      .+.+.|.+.+++++|+++++|++|+.++++ +.|++.+|++++++ .||.|.+.+.. .+.+.
T Consensus       129 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vV~AdG~~S~vR~~l~  189 (398)
T 2xdo_A          129 DLRAILLNSLENDTVIWDRKLVMLEPGKKK-WTLTFENKPSETAD-LVILANGGMSKVRKFVT  189 (398)
T ss_dssp             HHHHHHHHTSCTTSEEESCCEEEEEECSSS-EEEEETTSCCEEES-EEEECSCTTCSCCTTTC
T ss_pred             HHHHHHHhhcCCCEEEECCEEEEEEECCCE-EEEEECCCcEEecC-EEEECCCcchhHHhhcc
Confidence            456677777666799999999999988754 67888999889998 79999998753 44443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.11  E-value=1.2e-10  Score=117.84  Aligned_cols=41  Identities=29%  Similarity=0.367  Sum_probs=36.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +|+.+||+|||||++|+++|+.|+++|++|+|+|+.+.+++
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~   60 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY   60 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC
Confidence            45579999999999999999999999999999999866543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.11  E-value=2.5e-10  Score=114.61  Aligned_cols=50  Identities=38%  Similarity=0.502  Sum_probs=41.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCe
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF   95 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~   95 (445)
                      +..+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.....+|.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~   68 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA   68 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTC
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCc
Confidence            34589999999999999999999999999999999999986654333333

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.07  E-value=2.4e-10  Score=113.53  Aligned_cols=41  Identities=27%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||++||+||+.|++.|++|+|+|+ +.+||.+.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   65 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCV   65 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCcee
Confidence            368999999999999999999999999999999 78898764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.06  E-value=1.8e-09  Score=107.37  Aligned_cols=42  Identities=33%  Similarity=0.380  Sum_probs=36.2

Q ss_pred             ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           43 SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        43 ~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      +.++.++||+|||||++||++|+.|+++|.+|+|+||.+.++
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   47 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT   47 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            445567999999999999999999999999999999987764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.06  E-value=5.1e-10  Score=112.68  Aligned_cols=42  Identities=38%  Similarity=0.597  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999998653

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.06  E-value=3.9e-10  Score=109.45  Aligned_cols=60  Identities=13%  Similarity=0.113  Sum_probs=47.3

Q ss_pred             cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352          249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR  310 (445)
Q Consensus       249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~  310 (445)
                      .+.+.|.+.+ +.+|+++++|++++..+++.+.|+++||++++|+ .||-|-+.... .+.+.
T Consensus       113 ~L~~~L~~~~-~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~ad-lvVgADG~~S~vR~~l~  173 (412)
T 4hb9_A          113 ELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVD-VLVGADGSNSKVRKQYL  173 (412)
T ss_dssp             HHHHHHHTTC-TTTEECSCCEEEEEECTTSCEEEEETTSCEEEES-EEEECCCTTCHHHHHHS
T ss_pred             HHHHHHHhhc-cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEee-EEEECCCCCcchHHHhC
Confidence            4556677777 5789999999999987776688999999999998 68888888653 44443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.05  E-value=5.6e-10  Score=111.92  Aligned_cols=48  Identities=31%  Similarity=0.479  Sum_probs=40.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCCCCCcceeeeccCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASDAVGGRVRTDSVDG   94 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~~~GG~~~s~~~~g   94 (445)
                      ..+||+|||||++||++|+.|+ +.|++|+|+|+++.+||.+.....+|
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg   55 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPG   55 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCC
Confidence            3579999999999999999999 88999999999999998664433333

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.05  E-value=1.1e-09  Score=106.63  Aligned_cols=51  Identities=14%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCCc--eEEeccEEEEcCChhH-HhhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANGE--TLKSEIGVILAVEEPE-ADKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~--~i~a~~~VV~a~~~~~-~~~ll~~  311 (445)
                      |++|+.+++|++|+.++++ .+.|.+.+|+  +++|+ .||.|++.+. +.++++.
T Consensus       120 gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~-~vV~A~G~~s~l~~~~g~  174 (421)
T 3nix_A          120 GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEAR-FIIDASGYGRVIPRMFGL  174 (421)
T ss_dssp             TCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEE-EEEECCGGGCHHHHHTTC
T ss_pred             CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcC-EEEECCCCchhhHHhcCC
Confidence            8999999999999988655 3566778887  69998 7999999875 3455544

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.04  E-value=1.5e-09  Score=100.93  Aligned_cols=40  Identities=28%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      .|+.|||+|||||++||+||.+|+++|++|+|+|++ .+||
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg   42 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRN   42 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCC
Confidence            467899999999999999999999999999999986 4455

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.03  E-value=1.6e-09  Score=103.36  Aligned_cols=43  Identities=21%  Similarity=0.358  Sum_probs=38.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      |+..+||+|||||++||++|+.|+++|++|+|+|+++.+||.+
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~   53 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQL   53 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcc
Confidence            4557899999999999999999999999999999999888754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.02  E-value=8.7e-10  Score=106.67  Aligned_cols=51  Identities=25%  Similarity=0.329  Sum_probs=41.7

Q ss_pred             CCcEEeCceeeEEEecCCCcC-eEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMP-NVRLANGETLKSEIGVILAVEEPE-ADKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~-~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~  311 (445)
                      |++|+++++|++|+.++++++ .|++.+|++++++ .||.|++.+. +.+.++.
T Consensus       122 gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad-~vV~AdG~~s~vr~~lg~  174 (399)
T 2x3n_A          122 TVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPR-VVVGADGIASYVRRRLLD  174 (399)
T ss_dssp             TEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEE-EEEECCCTTCHHHHHTSC
T ss_pred             CcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECC-EEEECCCCChHHHHHhCC
Confidence            789999999999998876632 8999999889998 7999999875 4555544

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.02  E-value=1.6e-09  Score=99.58  Aligned_cols=40  Identities=35%  Similarity=0.549  Sum_probs=37.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~   86 (445)
                      .++||+|||||++||++|+.|++. |.+|+|+|+++.+||.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~   78 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG   78 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence            458999999999999999999997 9999999999988874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.00  E-value=9.9e-10  Score=104.31  Aligned_cols=41  Identities=37%  Similarity=0.588  Sum_probs=38.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +++||+|||||++||++|+.|+++|++|+|+|+++.+||.+
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~   42 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAW   42 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            35799999999999999999999999999999999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.00  E-value=2.9e-09  Score=102.23  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=35.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.+++
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            468999999999999999999999999999999887764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.99  E-value=3.2e-09  Score=105.53  Aligned_cols=40  Identities=35%  Similarity=0.405  Sum_probs=35.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ...++||+|||||++||++|+.|+++|.+|+||||.+.++
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   48 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT   48 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            3456899999999999999999999999999999987664

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.99  E-value=6.9e-09  Score=104.83  Aligned_cols=39  Identities=26%  Similarity=0.442  Sum_probs=36.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            468999999999999999999999999999999876665

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.99  E-value=1.3e-09  Score=102.44  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~   46 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL   46 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            4799999999999999999999999999999999988755

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.99  E-value=1.5e-09  Score=108.15  Aligned_cols=39  Identities=31%  Similarity=0.510  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +.+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999875444

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.98  E-value=3.1e-09  Score=100.17  Aligned_cols=41  Identities=27%  Similarity=0.509  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +++||+|||||++||++|+.|+++|++|+|+|+++.+||.+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~   44 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL   44 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee
Confidence            45899999999999999999999999999999999888754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.97  E-value=3.1e-09  Score=102.59  Aligned_cols=51  Identities=10%  Similarity=0.053  Sum_probs=40.3

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEe-CCCc--eEEeccEEEEcCChhHH-hhhcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRL-ANGE--TLKSEIGVILAVEEPEA-DKLLRQ  311 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~-~~g~--~i~a~~~VV~a~~~~~~-~~ll~~  311 (445)
                      |++|+++++|++|+.++++.+.|++ .+|+  +++|+ .||.|.+.+.. .+.++.
T Consensus       117 g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~-~vV~AdG~~S~vr~~l~~  171 (394)
T 1k0i_A          117 GATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCD-YIAGCDGFHGISRQSIPA  171 (394)
T ss_dssp             TCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECS-EEEECCCTTCSTGGGSCG
T ss_pred             CCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeC-EEEECCCCCcHHHHhcCc
Confidence            8999999999999887544577887 7887  68998 79999998753 455543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.96  E-value=2.1e-09  Score=107.91  Aligned_cols=42  Identities=31%  Similarity=0.457  Sum_probs=38.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~   49 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY   49 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999998654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.96  E-value=6.5e-10  Score=112.47  Aligned_cols=41  Identities=39%  Similarity=0.599  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.|+++|++|+|+|+.+.+||..
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~  165 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT  165 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcch
Confidence            35799999999999999999999999999999999998865

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.96  E-value=7.6e-10  Score=111.38  Aligned_cols=38  Identities=34%  Similarity=0.545  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+||+|||||++||++|+.|+++|.+|+||||++.++
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            35899999999999999999999999999999987654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.95  E-value=1.1e-09  Score=109.54  Aligned_cols=37  Identities=30%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .++||+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~   42 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP   42 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence            3589999999999999999999999999999998743

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.95  E-value=6.1e-09  Score=101.24  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=38.5

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++|+++++|++|+.+++++..|++.+|+++.+| .||+|++..
T Consensus       208 GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD-~Vv~a~G~~  250 (415)
T 3lxd_A          208 GVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPAD-IVIVGIGIV  250 (415)
T ss_dssp             TCEEEETCCEEEEEESSSBEEEEEESSSCEEECS-EEEECSCCE
T ss_pred             CCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcC-EEEECCCCc
Confidence            9999999999999987766668999999999998 799999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.95  E-value=5e-09  Score=104.92  Aligned_cols=45  Identities=24%  Similarity=0.354  Sum_probs=40.8

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++.++||+|||||++|++||+.|++.|++|+|+|+++.+||.+.
T Consensus        39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            345679999999999999999999999999999999988998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.94  E-value=5.3e-09  Score=105.90  Aligned_cols=39  Identities=31%  Similarity=0.407  Sum_probs=36.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      .+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~   45 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            579999999999999999999999999999998877653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.94  E-value=3.6e-09  Score=102.71  Aligned_cols=39  Identities=33%  Similarity=0.564  Sum_probs=34.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDAVG   84 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~~G   84 (445)
                      +..+||+|||||++||++|..|++.|.+ |+|+|+.+.++
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~   41 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   41 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence            4568999999999999999999999999 99999987765

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.94  E-value=4.5e-09  Score=98.25  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ++||+|||||++||+||+.|+++|++|+|+|++  +||.+.
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~   53 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLT   53 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeec
Confidence            589999999999999999999999999999997  777654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.93  E-value=9.1e-10  Score=108.70  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ++||+|||||++||+||+.|++.|++|+|+|+ +.+||.+.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            58999999999999999999999999999999 78998653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.93  E-value=1.1e-09  Score=106.21  Aligned_cols=38  Identities=34%  Similarity=0.466  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG   85 (445)
                      .+||+|||||++|+++|+.|+++  |++|+|+|++...+|
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~   75 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE   75 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            48999999999999999999999  999999999865544

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.92  E-value=2e-09  Score=108.64  Aligned_cols=38  Identities=29%  Similarity=0.340  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+||+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            35899999999999999999999999999999987653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.91  E-value=8.2e-09  Score=96.05  Aligned_cols=41  Identities=32%  Similarity=0.505  Sum_probs=37.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||++|+.|+++  |++|+|+|++..+||.+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            358999999999999999999997  99999999999888744

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.90  E-value=1.2e-08  Score=98.83  Aligned_cols=54  Identities=19%  Similarity=0.235  Sum_probs=43.1

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      .+.+.+.+.+.  |++|+++++|++|+.+++++.+|++.+|+++.+| .||+|++..
T Consensus       185 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD-~Vv~a~G~~  240 (404)
T 3fg2_P          185 EISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCD-LVVVGVGVI  240 (404)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECS-EEEECCCEE
T ss_pred             HHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcC-EEEECcCCc
Confidence            34444444332  9999999999999987766678999999999998 799999874

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.89  E-value=3.1e-09  Score=106.50  Aligned_cols=43  Identities=19%  Similarity=0.157  Sum_probs=37.5

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++| ++++|++|..+++++++|.+.+|+++.|+ .||+|++.+.
T Consensus       138 GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~Ad-aVVLATG~~s  180 (637)
T 2zxi_A          138 NLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTK-AVVVTTGTFL  180 (637)
T ss_dssp             TEEE-EESCEEEEEESSSBEEEEEETTSCEEECS-EEEECCTTCB
T ss_pred             CCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeC-EEEEccCCCc
Confidence            7888 68899999988777778999999899998 7999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.88  E-value=3.7e-09  Score=99.57  Aligned_cols=43  Identities=30%  Similarity=0.379  Sum_probs=36.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC----CCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD----AVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~----~~GG~~   87 (445)
                      .+.++||+|||||++||+||+.|+++|++|+|+|+++    .+||.+
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~   65 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQL   65 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccc
Confidence            3456899999999999999999999999999999954    566543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.88  E-value=1.3e-08  Score=101.09  Aligned_cols=41  Identities=32%  Similarity=0.404  Sum_probs=37.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ....+||+|||||++||++|..|++.|++|+|+|+++.+|+
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~  129 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR  129 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC
Confidence            34568999999999999999999999999999999988764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.88  E-value=1.1e-08  Score=104.56  Aligned_cols=40  Identities=30%  Similarity=0.375  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||+.|+++|.+|+|+||....+|.+
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            5899999999999999999999999999999988765543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.87  E-value=5.4e-09  Score=102.66  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=38.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++||++|..|++.|.  +|+|||+++.+||.+.
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~   48 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN   48 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec
Confidence            46899999999999999999999999  9999999999998654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.86  E-value=1.9e-08  Score=102.01  Aligned_cols=40  Identities=28%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ..+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~   56 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSH   56 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            4589999999999999999999999999999998776654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.86  E-value=3.6e-09  Score=106.42  Aligned_cols=43  Identities=14%  Similarity=0.132  Sum_probs=37.2

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++| ++++|+.|..+++++++|.+.+|.+++|+ .||+|++.+.
T Consensus       139 GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad-~VVLATGt~s  181 (651)
T 3ces_A          139 NLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAK-AVVLTVGTFL  181 (651)
T ss_dssp             TEEE-EECCEEEEEESSSBEEEEEETTSEEEEEE-EEEECCSTTT
T ss_pred             CCEE-EEEEEEEEEecCCEEEEEEECCCCEEECC-EEEEcCCCCc
Confidence            7888 67899999988777778999999889998 7999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.86  E-value=1.2e-08  Score=103.42  Aligned_cols=40  Identities=38%  Similarity=0.607  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||++|+.|++.      |.+|+|+||.+.+|+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~   80 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   80 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcc
Confidence            58999999999999999999999      99999999999888753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.85  E-value=1.4e-08  Score=100.37  Aligned_cols=53  Identities=15%  Similarity=0.191  Sum_probs=40.7

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      .+.+.+.+.+.  |++|+++++|++|+.++++ +.|.+.+|+++.+| .||+|++..
T Consensus       203 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~aD-~Vv~a~G~~  257 (472)
T 3iwa_A          203 SLSQMLRHDLEKNDVVVHTGEKVVRLEGENGK-VARVITDKRTLDAD-LVILAAGVS  257 (472)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSB-EEEEEESSCEEECS-EEEECSCEE
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEccCCe-EEEEEeCCCEEEcC-EEEECCCCC
Confidence            34444444432  9999999999999886554 55888899899998 799999874

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.84  E-value=2.7e-09  Score=105.07  Aligned_cols=37  Identities=32%  Similarity=0.489  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            3589999999999999999999999999999998764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.84  E-value=2.4e-08  Score=92.36  Aligned_cols=41  Identities=34%  Similarity=0.491  Sum_probs=37.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.|+++  |++|+|+|+++.+||.+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            347999999999999999999998  99999999999998744

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.82  E-value=1.7e-09  Score=104.24  Aligned_cols=41  Identities=24%  Similarity=0.366  Sum_probs=37.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      |+.|||+|||||++||++|+.|+++|++|+|+||++.+|..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~   42 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP   42 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC
Confidence            35699999999999999999999999999999999887753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.81  E-value=1.5e-08  Score=99.94  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=35.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-----CCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-----RPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-----~~V~vlE~~~~~G   84 (445)
                      ..+||+|||||++||++|..|++.|     .+|+|||+++.+|
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            4579999999999999999999999     9999999999887

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.77  E-value=5e-08  Score=93.73  Aligned_cols=53  Identities=17%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      +.+.+.+.++  |++|+++++|++|+.++++ +.|++.+|+++.+| .||+|++...
T Consensus       189 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d-~vv~a~G~~p  243 (384)
T 2v3a_A          189 AAKAVQAGLEGLGVRFHLGPVLASLKKAGEG-LEAHLSDGEVIPCD-LVVSAVGLRP  243 (384)
T ss_dssp             HHHHHHHHHHTTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEES-EEEECSCEEE
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEecCCE-EEEEECCCCEEECC-EEEECcCCCc
Confidence            3344444332  9999999999999876543 67888899889998 7999998753

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.76  E-value=2.8e-08  Score=99.92  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=36.9

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      |++++.+ +|++|..++++ ++.|++.+|++++|+ .||.|++.+..
T Consensus       179 gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad-~vV~A~G~~s~  223 (538)
T 2aqj_A          179 GVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEAD-LFIDCSGMRGL  223 (538)
T ss_dssp             TCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCS-EEEECCGGGCC
T ss_pred             CCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeC-EEEECCCCchh
Confidence            8999999 89999886554 467888889889998 79999998753

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.75  E-value=1.2e-08  Score=102.71  Aligned_cols=40  Identities=35%  Similarity=0.401  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD-AVGG   85 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~-~~GG   85 (445)
                      ...+||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            346999999999999999999999999999999975 4554

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.74  E-value=4.4e-09  Score=98.75  Aligned_cols=42  Identities=33%  Similarity=0.460  Sum_probs=38.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHS--QGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~--~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++||+||++|++  .|++|+|+|+++.+||.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence            35899999999999999999985  4999999999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.74  E-value=1.2e-07  Score=96.43  Aligned_cols=39  Identities=18%  Similarity=0.383  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG   84 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G   84 (445)
                      +.++||+|||||++||+||..|++.  |++|+|+|+++.+|
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4467999999999999999999998  89999999998876

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.73  E-value=4.4e-08  Score=83.34  Aligned_cols=33  Identities=36%  Similarity=0.511  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +||+|||||++|+.+|..|++.|.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            699999999999999999999999999999976

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.73  E-value=3.5e-08  Score=91.82  Aligned_cols=38  Identities=34%  Similarity=0.479  Sum_probs=34.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcce
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRV   87 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~   87 (445)
                      +||+|||||++||+||..|++.|+ +|+|+|++ .+||.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~   40 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQI   40 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccc
Confidence            699999999999999999999999 99999994 667654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.72  E-value=5.2e-08  Score=97.38  Aligned_cols=44  Identities=9%  Similarity=0.049  Sum_probs=37.1

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      |++++.+ +|++|..++++ ++.|++.+|++++|+ .||.|++.+..
T Consensus       187 gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad-~vV~A~G~~S~  231 (511)
T 2weu_A          187 GVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGD-LFVDCTGFRGL  231 (511)
T ss_dssp             TCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECS-EEEECCGGGCC
T ss_pred             CCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcC-EEEECCCcchH
Confidence            9999999 99999986543 467888899889998 79999999753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.68  E-value=1.6e-07  Score=94.20  Aligned_cols=40  Identities=30%  Similarity=0.498  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||+.|++ |.+|+|+||.+..||..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            35899999999999999999999 99999999998877643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.67  E-value=2.1e-08  Score=103.78  Aligned_cols=71  Identities=35%  Similarity=0.397  Sum_probs=56.2

Q ss_pred             cCCCCccccccccCCCCccc-ccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           19 SKPHRFTFNIQASSSSSSKQ-LSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .++..|..|++...-..... +....+....+||+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus       361 ~~~~~C~vnp~~g~e~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          361 MSPIRCTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             TSCCCCSSCTTTTTTTTTCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             CCcccCCcCcccCcccccccCccccCcccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            56889999987665543221 112234456789999999999999999999999999999999999998754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.67  E-value=1.9e-07  Score=91.13  Aligned_cols=53  Identities=19%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEe--cCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDF--DEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~--~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      +.+.+.+.++  |++++++++|++|+.  +++++..|++.+|+++.+| .||+|++..
T Consensus       193 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D-~Vv~a~G~~  249 (431)
T 1q1r_A          193 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPAD-LVIAGIGLI  249 (431)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECS-EEEECCCEE
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcC-EEEECCCCC
Confidence            3344444332  999999999999987  4455557889999889998 799999864

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.66  E-value=1.8e-07  Score=94.94  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGR   86 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~   86 (445)
                      .+||+|||||++||+||+.|+++|  .+|+|+||....+|.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~   45 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence            479999999999999999999999  999999998776653

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.66  E-value=7.9e-08  Score=94.82  Aligned_cols=36  Identities=33%  Similarity=0.648  Sum_probs=33.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      ||+|||||++||+||+.|+++|.+|+|+||. ..||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            7999999999999999999999999999998 55654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.65  E-value=2.4e-07  Score=94.79  Aligned_cols=37  Identities=24%  Similarity=0.421  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH---H-CCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLH---S-QGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~---~-~G~~V~vlE~~~~~   83 (445)
                      ..+||+|||||++||+||+.|+   + +|.+|+|+||....
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            3589999999999999999999   6 89999999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.65  E-value=3.7e-08  Score=96.84  Aligned_cols=36  Identities=28%  Similarity=0.533  Sum_probs=34.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G   84 (445)
                      +||+|||||++||+||..|++.  |++|+|+|+++.+|
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            5999999999999999999998  89999999999887

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.64  E-value=1.9e-08  Score=93.66  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +|||+|||||++||+||.+|++.|++|+|+|+ +.+||.+.
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~   45 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMA   45 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeee
Confidence            59999999999999999999999999999998 56888774

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.63  E-value=4.8e-07  Score=87.63  Aligned_cols=42  Identities=14%  Similarity=0.255  Sum_probs=37.3

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++|+++++|++|+.++ ++..|++.+|+++.+| .||+|++..
T Consensus       199 GV~i~~~~~v~~i~~~~-~~~~v~~~dg~~i~aD-~Vv~a~G~~  240 (410)
T 3ef6_A          199 GVQVELGTGVVGFSGEG-QLEQVMASDGRSFVAD-SALICVGAE  240 (410)
T ss_dssp             TCEEECSCCEEEEECSS-SCCEEEETTSCEEECS-EEEECSCEE
T ss_pred             CCEEEeCCEEEEEeccC-cEEEEEECCCCEEEcC-EEEEeeCCe
Confidence            99999999999998765 5578999999999998 799999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.63  E-value=2e-08  Score=93.53  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=33.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      |.+.|||+|||||++||+||.+|+++|++|+|+|+..
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            3456999999999999999999999999999999975

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.62  E-value=1.6e-07  Score=94.44  Aligned_cols=50  Identities=16%  Similarity=0.197  Sum_probs=39.8

Q ss_pred             CCcEEeCceeeEEEec----CCCcCeEEeC--CCc--eEEeccEEEEcCChhHHhhhc
Q 042352          260 FESILLNTRVLSIDFD----EQNMPNVRLA--NGE--TLKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~----~~~~~~V~~~--~g~--~i~a~~~VV~a~~~~~~~~ll  309 (445)
                      +.+|++++.|++|..+    ++++++|++.  +|+  +++|++.||++++.-...+||
T Consensus       241 NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL  298 (583)
T 3qvp_A          241 NLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL  298 (583)
T ss_dssp             TEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             CcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHH
Confidence            8999999999999987    4557888875  564  477876799999997766544

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.61  E-value=2e-08  Score=102.20  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=37.8

Q ss_pred             CCCccccccccccccccccCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352            1 MPLSLSSSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ||+|+++-...|..-....++-+..........  ......+..|+..+||+|||||++|++||+.|+++|++|+|+|+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~   78 (623)
T 3pl8_A            1 MSTSSSDPFFNFAKSSFRSAAAQKASASSLPPL--PGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG   78 (623)
T ss_dssp             -----------------------------------------------CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCCCCcccccccccccCccccchhccCCCC--CCCCcccccccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEecc
Confidence            778777766655555554444443331111100  000111223345689999999999999999999999999999999


Q ss_pred             CCCCcce
Q 042352           81 DAVGGRV   87 (445)
Q Consensus        81 ~~~GG~~   87 (445)
                      +..||.+
T Consensus        79 ~~~gg~~   85 (623)
T 3pl8_A           79 EIDSGLK   85 (623)
T ss_dssp             CCCSSSS
T ss_pred             CCCCCcc
Confidence            9998844

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.58  E-value=3.6e-07  Score=92.43  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G   84 (445)
                      +||+|||||++||+||+.|++.  |++|+|+|+++..|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            5899999999999999999998  88999999998876

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.56  E-value=3.6e-08  Score=97.98  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=38.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +|.++||+|||||++||+||..|++.|++|+|+|+++.+||.|.
T Consensus        22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~   65 (491)
T 3urh_A           22 SMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCL   65 (491)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             hcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            34569999999999999999999999999999999999999754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.54  E-value=6.4e-08  Score=92.23  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=35.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..++||+|||||++|+++|+.|+++|++|+|+|++...+|
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            3568999999999999999999999999999999875443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.53  E-value=3.8e-07  Score=87.44  Aligned_cols=39  Identities=18%  Similarity=0.433  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .++.+|+|||||++|++||..|.+.+.+|+|+|+++..+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~   45 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP   45 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            356789999999999999999977799999999987643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.51  E-value=6.6e-08  Score=90.30  Aligned_cols=44  Identities=32%  Similarity=0.496  Sum_probs=38.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      |+..+||+|||||++|++||+.|++.|++|+|+|+ ..+||.+..
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            44568999999999999999999999999999999 567887653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.49  E-value=3e-07  Score=91.36  Aligned_cols=42  Identities=26%  Similarity=0.281  Sum_probs=32.4

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +..+.+||||||||++||++|+.|.+.|...+++|+.+..|+
T Consensus        35 p~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~   76 (501)
T 4b63_A           35 PQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQ   76 (501)
T ss_dssp             CTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CC
T ss_pred             CCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCC
Confidence            344568999999999999999999998887777777776665

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.48  E-value=5.3e-08  Score=96.07  Aligned_cols=42  Identities=33%  Similarity=0.443  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL   44 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence            358999999999999999999999999999999999999865

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.47  E-value=2e-07  Score=93.76  Aligned_cols=50  Identities=20%  Similarity=0.232  Sum_probs=39.3

Q ss_pred             CCcEEeCceeeEEEec--CCCcCeEEeC--CCc--eEEeccEEEEcCChhHHhhhc
Q 042352          260 FESILLNTRVLSIDFD--EQNMPNVRLA--NGE--TLKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~--~~~~~~V~~~--~g~--~i~a~~~VV~a~~~~~~~~ll  309 (445)
                      +.+|++++.|++|..+  ++++++|++.  +|+  +++|++.||++++.....+||
T Consensus       220 Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL  275 (577)
T 3q9t_A          220 NITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLL  275 (577)
T ss_dssp             TEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHH
Confidence            8899999999999988  5567788875  364  477865799999997765543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.46  E-value=2.1e-07  Score=95.94  Aligned_cols=66  Identities=27%  Similarity=0.377  Sum_probs=52.8

Q ss_pred             cCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           19 SKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+++.|..|+...+-....    ..+....+||+|||||++|++||..|+++|++|+|+|+++.+||...
T Consensus       348 ~~~~~C~~np~~~~e~~~~----~~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          348 GKVTSCLVNPRACHETKMP----ILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             TCCCCCSSCTTTTCTTTSC----CCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCceEEEeCcccccccccC----CCCCCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            4678899988665543322    11234568999999999999999999999999999999999999764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.43  E-value=1.7e-07  Score=97.54  Aligned_cols=71  Identities=25%  Similarity=0.345  Sum_probs=53.1

Q ss_pred             cCCCCccccccccCCCCccc-ccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           19 SKPHRFTFNIQASSSSSSKQ-LSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      .++..|..|+...+-..... +....+....+||+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus       359 ~~~~~C~~n~~~g~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          359 GPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCCCSSCTTTTTHHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CCceeeccCccccccccccccccccccccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            56888999876543211010 011122345689999999999999999999999999999999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.42  E-value=1.4e-07  Score=88.37  Aligned_cols=42  Identities=31%  Similarity=0.432  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ..+||+|||||++||+||..|++.|++|+|+|++ .+||.+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            4589999999999999999999999999999998 78887754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.42  E-value=2.1e-07  Score=91.13  Aligned_cols=43  Identities=42%  Similarity=0.499  Sum_probs=39.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ...+||+|||||++||+||+.|++.|++|+|+|+++.+||...
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            3568999999999999999999999999999999999999753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.39  E-value=1.4e-07  Score=93.41  Aligned_cols=45  Identities=38%  Similarity=0.519  Sum_probs=37.8

Q ss_pred             ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           43 SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        43 ~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.++.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus         6 ~~~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A            6 STNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             cCccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            33445689999999999999999999999999999997 6888764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.39  E-value=1.5e-07  Score=87.41  Aligned_cols=42  Identities=31%  Similarity=0.428  Sum_probs=38.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEE-EecCCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVL-LEASDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~v-lE~~~~~GG~~~s   89 (445)
                      +++||+|||||++||+||..|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            458999999999999999999999999999 999 778987643

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.38  E-value=2.3e-07  Score=91.76  Aligned_cols=41  Identities=37%  Similarity=0.451  Sum_probs=37.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +++||+|||||++||+||+.|++.|++|+|+|+++.+||+.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46899999999999999999999999999999998666554

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.37  E-value=2.9e-07  Score=81.73  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=36.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      |++++ +++|++|..++++++.|.+.+|++++|+ .||+|++.+..
T Consensus        83 gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~-~VV~A~G~~s~  126 (232)
T 2cul_A           83 PLHLF-QATATGLLLEGNRVVGVRTWEGPPARGE-KVVLAVGSFLG  126 (232)
T ss_dssp             TEEEE-ECCEEEEEEETTEEEEEEETTSCCEECS-EEEECCTTCSS
T ss_pred             CcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECC-EEEECCCCChh
Confidence            77888 6799999988766667888899889998 79999999653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.37  E-value=2.1e-07  Score=91.93  Aligned_cols=41  Identities=29%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            47999999999999999999999999999999989999764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.36  E-value=2.7e-07  Score=92.90  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=35.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      .+||+|||||++||++|+.|++.|.+|+|+||++.++.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~   63 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT   63 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            47999999999999999999999999999999887653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.36  E-value=2.8e-07  Score=92.07  Aligned_cols=44  Identities=30%  Similarity=0.474  Sum_probs=38.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--------CCCccee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--------AVGGRVR   88 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~   88 (445)
                      ++..+||+|||||++|++||..|++.|++|+|+|+++        .+||.|.
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   80 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV   80 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccC
Confidence            3456899999999999999999999999999999965        6788654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.36  E-value=1.9e-07  Score=92.48  Aligned_cols=42  Identities=31%  Similarity=0.451  Sum_probs=37.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.++||+|||||++||+||..|++.|++|+|+|++ .+||.|.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~   59 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV   59 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence            34699999999999999999999999999999975 7888753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.36  E-value=1.7e-07  Score=92.77  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=39.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            3468999999999999999999999999999999999998653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.36  E-value=2.5e-07  Score=91.26  Aligned_cols=42  Identities=38%  Similarity=0.520  Sum_probs=38.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.++||+|||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            45689999999999999999999999999999998 7888754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.35  E-value=1.5e-07  Score=93.25  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   45 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence            458999999999999999999999999999999999998653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.35  E-value=1.9e-06  Score=83.09  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=36.1

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++++++++|+.++.+++. ..|++.+|+++.+| .|++++|..
T Consensus       216 gi~v~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D-~vi~~~g~~  257 (401)
T 3vrd_B          216 LIEWHPGPDAAVVKTDTEA-MTVETSFGETFKAA-VINLIPPQR  257 (401)
T ss_dssp             SEEEECTTTTCEEEEETTT-TEEEETTSCEEECS-EEEECCCEE
T ss_pred             CcEEEeCceEEEEEecccc-eEEEcCCCcEEEee-EEEEecCcC
Confidence            8999999999999887654 77999999999998 788887753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.35  E-value=2.4e-07  Score=88.30  Aligned_cols=41  Identities=34%  Similarity=0.596  Sum_probs=37.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~   88 (445)
                      +++||+|||||++|+++|+.|++.|+ +|+|+|+++ +||.+.
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~   44 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK   44 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence            35799999999999999999999999 999999998 888653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.35  E-value=4.9e-07  Score=92.63  Aligned_cols=43  Identities=21%  Similarity=0.351  Sum_probs=37.4

Q ss_pred             cccCCCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCCC
Q 042352           42 NSKLERKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDAVG   84 (445)
Q Consensus        42 ~~~~~~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~~G   84 (445)
                      +..++..+||+|||||++||++|+.|++ .|.+|+|+||++.++
T Consensus        26 m~~~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           26 TEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             CSSCCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             cCCCCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            4444557899999999999999999999 999999999987654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.34  E-value=2.4e-07  Score=87.17  Aligned_cols=43  Identities=30%  Similarity=0.384  Sum_probs=38.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ++..+||+|||||++|+++|+.|++.|++|+|+|+. .+||.+.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            445689999999999999999999999999999975 6787654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.34  E-value=2.7e-07  Score=90.92  Aligned_cols=41  Identities=34%  Similarity=0.564  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +++||+|||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            4689999999999999999999999999999997 7888764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.33  E-value=2.2e-07  Score=91.84  Aligned_cols=42  Identities=31%  Similarity=0.443  Sum_probs=38.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            358999999999999999999999999999999999999753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.33  E-value=3.6e-07  Score=90.21  Aligned_cols=42  Identities=29%  Similarity=0.465  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            468999999999999999999999999999999989999764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.32  E-value=2.5e-07  Score=90.83  Aligned_cols=41  Identities=32%  Similarity=0.521  Sum_probs=37.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   43 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence            4589999999999999999999999999999997 7888763

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.31  E-value=2.4e-07  Score=87.74  Aligned_cols=37  Identities=30%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC------CCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG------RPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G------~~V~vlE~~~~~GG   85 (445)
                      +||+|||||++||++|+.|+++|      .+|+|+|++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            38999999999999999999998      89999999875444

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.31  E-value=2.5e-07  Score=86.89  Aligned_cols=43  Identities=28%  Similarity=0.367  Sum_probs=38.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec----CCCCCcceee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA----SDAVGGRVRT   89 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~----~~~~GG~~~s   89 (445)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+    ...+||.+..
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            357999999999999999999999999999999    6777887643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.30  E-value=2.4e-07  Score=86.43  Aligned_cols=41  Identities=24%  Similarity=0.453  Sum_probs=36.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.+||+|||||++||+||+.|++.|++|+|+|+ ..+||.+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~   44 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT   44 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEe
Confidence            458999999999999999999999999999997 47788654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.30  E-value=3.7e-07  Score=89.72  Aligned_cols=40  Identities=35%  Similarity=0.488  Sum_probs=37.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   41 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL   41 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            7999999999999999999999999999999989999754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.29  E-value=5.3e-07  Score=82.97  Aligned_cols=38  Identities=34%  Similarity=0.493  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ++||+|||||++||+||..|+++|++|+|+|+++..|+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~   39 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNR   39 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccc
Confidence            37999999999999999999999999999999765543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.28  E-value=3.3e-07  Score=90.94  Aligned_cols=39  Identities=31%  Similarity=0.442  Sum_probs=36.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++||+|||||++|++||..|++.|++|+|+|++ .+||.|
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc   46 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTC   46 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcc
Confidence            489999999999999999999999999999996 488876

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.28  E-value=5.1e-07  Score=89.46  Aligned_cols=43  Identities=35%  Similarity=0.446  Sum_probs=36.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC---------CCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD---------AVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~---------~~GG~~~   88 (445)
                      +..+||+|||||++|++||..|++.|++|+|+|+..         .+||.|.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~   58 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCV   58 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeec
Confidence            356999999999999999999999999999999521         3777664

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.28  E-value=3.4e-06  Score=84.65  Aligned_cols=50  Identities=24%  Similarity=0.252  Sum_probs=39.6

Q ss_pred             CCcEEeCceeeEEEec----C-CCcCeEEeCC--C-c--eEEeccEEEEcCChhHHhhhc
Q 042352          260 FESILLNTRVLSIDFD----E-QNMPNVRLAN--G-E--TLKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~----~-~~~~~V~~~~--g-~--~i~a~~~VV~a~~~~~~~~ll  309 (445)
                      +.+|++++.|++|..+    + +++++|++.+  | +  +++|++.||++++.-...+||
T Consensus       222 NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL  281 (566)
T 3fim_B          222 NLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILL  281 (566)
T ss_dssp             TEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHH
T ss_pred             CeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHH
Confidence            8899999999999987    3 4578888764  4 3  478855799999998776654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.27  E-value=2.8e-07  Score=91.52  Aligned_cols=43  Identities=19%  Similarity=0.293  Sum_probs=37.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++|+++++|++|+.++++.+.|++.+|+++.+| .||+|++..
T Consensus       249 GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D-~vv~a~G~~  291 (495)
T 2wpf_A          249 GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVD-VVMMAIGRI  291 (495)
T ss_dssp             TCEEEESCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSCEE
T ss_pred             CCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcC-EEEECCCCc
Confidence            9999999999999987655578888999889998 799999864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.27  E-value=4.8e-07  Score=89.77  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec--------CCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA--------SDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~--------~~~~GG~~~   88 (445)
                      .++||+|||||++||+||..|++.|++|+|+|+        ...+||.|.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   54 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV   54 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence            458999999999999999999999999999998        567888653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.25  E-value=1.4e-05  Score=80.11  Aligned_cols=50  Identities=24%  Similarity=0.361  Sum_probs=39.5

Q ss_pred             CCcEEeCceeeEEEecC-CCcCeEEeCC---Cc--eEEeccEEEEcCChhHHhhhc
Q 042352          260 FESILLNTRVLSIDFDE-QNMPNVRLAN---GE--TLKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~-~~~~~V~~~~---g~--~i~a~~~VV~a~~~~~~~~ll  309 (445)
                      |++|++++.|++|..++ +++++|++.+   |+  +++|++.||+|++.....+|+
T Consensus       223 ~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL  278 (546)
T 2jbv_A          223 NFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLL  278 (546)
T ss_dssp             TEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhh
Confidence            89999999999999987 5677888754   54  588875699999996555543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.25  E-value=5.2e-07  Score=89.49  Aligned_cols=43  Identities=12%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++|+++++|++|+.++++.+.|++.+|+++.+| .||+|++..
T Consensus       245 GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D-~vv~a~G~~  287 (490)
T 1fec_A          245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYD-VVMLAIGRV  287 (490)
T ss_dssp             TEEEEETCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSCEE
T ss_pred             CCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcC-EEEEccCCC
Confidence            9999999999999987655578888899889998 799999874

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.24  E-value=7.7e-07  Score=87.56  Aligned_cols=41  Identities=29%  Similarity=0.536  Sum_probs=38.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCC---EEEEecCCCCCcceee
Q 042352           49 DRVIVIGAGLAGLAAATRLHS---QGRP---FVLLEASDAVGGRVRT   89 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~---~G~~---V~vlE~~~~~GG~~~s   89 (445)
                      +||+|||||++||+||..|++   .|++   |+|+|+++.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            699999999999999999999   9999   9999999999997754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.24  E-value=4.3e-07  Score=89.53  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~   41 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVC   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence            479999999999999999999999999999998 778765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.23  E-value=4.9e-07  Score=88.88  Aligned_cols=41  Identities=37%  Similarity=0.593  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .++||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            348999999999999999999999999999999 78998864

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.21  E-value=7.1e-07  Score=87.00  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ++||+|||||++||++|+.|+++|++|+|+|+..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3799999999999999999999999999999976

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.20  E-value=6.3e-07  Score=88.25  Aligned_cols=39  Identities=38%  Similarity=0.543  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++||+|||||++|++||..|++.|++|+|+|+++ +||.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~   44 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVC   44 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence            5899999999999999999999999999999987 88865

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.20  E-value=1e-06  Score=84.50  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=33.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~   83 (445)
                      .||+|||||++||++|..|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3899999999999999999999  9999999998776

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.19  E-value=5.3e-07  Score=89.71  Aligned_cols=40  Identities=23%  Similarity=0.480  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~GG~~~   88 (445)
                      ++||+|||||++|++||+.|++.   |++|+|+|+++ +||.+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            47999999999999999999999   99999999988 898754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=8.8e-07  Score=87.03  Aligned_cols=39  Identities=31%  Similarity=0.560  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~   41 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence            479999999999999999999999999999998 788875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=1e-06  Score=87.59  Aligned_cols=40  Identities=38%  Similarity=0.529  Sum_probs=36.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ++||+|||||++|++||..|++.|++|+|+|++ ..||.|.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~   41 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   41 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence            479999999999999999999999999999998 5788764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.16  E-value=1.5e-06  Score=87.40  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=36.6

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++++ +|++|..++++ ++.|++.+|++++|+ .||.|++.+.
T Consensus       209 Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad-~vI~A~G~~S  252 (550)
T 2e4g_A          209 GVRHVED-RVEHVQRDANGNIESVRTATGRVFDAD-LFVDCSGFRG  252 (550)
T ss_dssp             CCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECS-EEEECCGGGC
T ss_pred             CcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECC-EEEECCCCch
Confidence            8999999 99999886543 467888899889998 7999999875

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.15  E-value=2e-06  Score=80.63  Aligned_cols=39  Identities=41%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +||+|||||++|+.||+.|+++|++|+|+|++...+..+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            699999999999999999999999999999987555443

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.14  E-value=2e-06  Score=86.07  Aligned_cols=43  Identities=7%  Similarity=0.006  Sum_probs=35.9

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++++.+ +|++|+.++++ ++.|++.+|++++|+ .||.|++.+.
T Consensus       190 Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad-~vV~AdG~~S  233 (526)
T 2pyx_A          190 GVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQ-LFIDCTGAKS  233 (526)
T ss_dssp             CCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECS-EEEECSGGGC
T ss_pred             CCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcC-EEEECCCcch
Confidence            8999999 69999887554 357888888789998 7999999975

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.11  E-value=1.8e-06  Score=80.10  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ++||+|||||++||++|..|++.|++|+|+|+  ..||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            37999999999999999999999999999985  5788764

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.11  E-value=1.7e-06  Score=88.90  Aligned_cols=59  Identities=22%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-----CCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHS-----QGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN  121 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~-----~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~  121 (445)
                      .+||+|||||++||++|..|++     .|.+|+|+||.+....             .|..  ....+...++++.+|+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~-------------~gra--~~l~~~tle~l~~lGl~   71 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY-------------NGQA--DGLQCRTLESLKNLGLA   71 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC-------------SCSC--CEECHHHHHHHHTTTCH
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCC-------------CCce--eEEChHHHHHHHHCCCH
Confidence            4799999999999999999999     9999999999754321             0000  02245677778877763

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.09  E-value=1.4e-06  Score=85.43  Aligned_cols=42  Identities=26%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-C------CCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHS-Q------GRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~-~------G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++|++||..|++ .      |++|+|+|+.+.+||.+.
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            45799999999999999999999 7      999999999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.05  E-value=1.1e-06  Score=87.25  Aligned_cols=40  Identities=33%  Similarity=0.464  Sum_probs=37.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+||+|||||++||+||+.|++. ++|+|+|+++.+||...
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            47999999999999999999999 99999999999999765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.05  E-value=2.7e-06  Score=83.37  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGR   86 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~   86 (445)
                      +++||+|||||++||+||+.|++.  |++|+|+|+++..++.
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~   43 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA   43 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC
Confidence            357999999999999999999998  8899999999887653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.04  E-value=2.8e-06  Score=90.91  Aligned_cols=42  Identities=38%  Similarity=0.580  Sum_probs=39.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++||+||..|++.|++|+|+|+++.+||++.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            358999999999999999999999999999999999999887

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.01  E-value=4.1e-06  Score=90.30  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~   87 (445)
                      ..+||+|||||++||+||..|++.|+ +|+|+|+++.+||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            36899999999999999999999999 799999999999975

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.01  E-value=3.5e-06  Score=86.03  Aligned_cols=38  Identities=13%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG   85 (445)
                      .+||+|||||++||+||+.|+++      |.+|+|+||....++
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s   65 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS   65 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence            58999999999999999999997      999999999876443

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.01  E-value=4e-06  Score=83.69  Aligned_cols=41  Identities=32%  Similarity=0.422  Sum_probs=36.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +..+||+|||||++|++||..|+++|++|+|+|+  .+||.+.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            3568999999999999999999999999999996  5788764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.99  E-value=3.8e-06  Score=83.80  Aligned_cols=52  Identities=6%  Similarity=-0.057  Sum_probs=40.7

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      +.+.+.+.++  |+++++++.|++++..+++ +.|.+.+++++.+| .|++|++-.
T Consensus       265 i~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~-~~v~~~~~~~~~~D-~vLvAvGR~  318 (542)
T 4b1b_A          265 CAVKVKLYMEEQGVMFKNGILPKKLTKMDDK-ILVEFSDKTSELYD-TVLYAIGRK  318 (542)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEEETTE-EEEEETTSCEEEES-EEEECSCEE
T ss_pred             HHHHHHHHHHhhcceeecceEEEEEEecCCe-EEEEEcCCCeEEEE-EEEEccccc
Confidence            4444444443  9999999999999988765 67888888888998 799999764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.98  E-value=4.1e-06  Score=85.27  Aligned_cols=35  Identities=31%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+||+|||||++||+||..|++.|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            45689999999999999999999999999999973

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.96  E-value=6.2e-06  Score=79.70  Aligned_cols=38  Identities=26%  Similarity=0.383  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~G   84 (445)
                      ..+||+|||||++|++||..|++.|+  +|+|+|+++.++
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            46899999999999999999999998  599999987654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.95  E-value=2.8e-05  Score=76.08  Aligned_cols=43  Identities=12%  Similarity=0.111  Sum_probs=36.7

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++++++++|++|+.++++.+.|++.+|+++.+| .||+|++..
T Consensus       222 Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D-~vv~a~G~~  264 (450)
T 1ges_A          222 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVD-CLIWAIGRE  264 (450)
T ss_dssp             SCEEECSCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSCEE
T ss_pred             CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcC-EEEECCCCC
Confidence            8899999999999987655467888899889998 799999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=5.5e-06  Score=81.24  Aligned_cols=41  Identities=27%  Similarity=0.319  Sum_probs=37.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~   88 (445)
                      .+||+|||||++|++||..|++.|  ++|+|+|+.+.+||...
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            479999999999999999999998  99999999999998653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.93  E-value=3.8e-06  Score=81.22  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHS---QGRPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~---~G~~V~vlE~~~~~GG   85 (445)
                      .||+|||||++||++|..|++   .|++|+|+|+++..++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~   41 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF   41 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCcee
Confidence            589999999999999999999   8999999999986544

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.89  E-value=9.5e-06  Score=80.40  Aligned_cols=38  Identities=18%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQG---RPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G---~~V~vlE~~~~~GG   85 (445)
                      ++||+|||||++|++||..|++.|   .+|+|+|+++.+|.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~   75 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISF   75 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCc
Confidence            589999999999999999999988   99999999887653

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.85  E-value=9.9e-06  Score=81.42  Aligned_cols=37  Identities=35%  Similarity=0.562  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+||||||.+|+++|++|+++|++|+|||+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            5689999999999999999999999999999998653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.85  E-value=7.9e-06  Score=79.73  Aligned_cols=35  Identities=31%  Similarity=0.610  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---CCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHS---QGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~---~G~~V~vlE~~~~   82 (445)
                      +.||+|||||++|++||..|++   .|++|+|+|+++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            4799999999999999999999   8999999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.85  E-value=8.1e-06  Score=80.93  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=36.2

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      |++++++++|++|+.+++. +.|++.+|+++.+| .||+|++..
T Consensus       240 GV~v~~~~~V~~i~~~~~~-~~v~l~dG~~i~aD-~Vv~a~G~~  281 (493)
T 1m6i_A          240 GVKVMPNAIVQSVGVSSGK-LLIKLKDGRKVETD-HIVAAVGLE  281 (493)
T ss_dssp             TCEEECSCCEEEEEEETTE-EEEEETTSCEEEES-EEEECCCEE
T ss_pred             CCEEEeCCEEEEEEecCCe-EEEEECCCCEEECC-EEEECCCCC
Confidence            9999999999999876543 57888999999998 799999874

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.84  E-value=9.9e-06  Score=79.41  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG   85 (445)
                      +||+|||||++|++||..|++.  |++|+|+|+++.+|.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            5899999999999999999998  999999999887653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.82  E-value=9.7e-05  Score=72.20  Aligned_cols=37  Identities=27%  Similarity=0.530  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ...+++|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP  184 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence            4579999999999999999999999999999987653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.82  E-value=1.2e-05  Score=79.52  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG   85 (445)
                      ++||+|||||++|++||..|++.  |.+|+|+|+++..|+
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   75 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSY   75 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSB
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCC
Confidence            46999999999999999999996  899999999887753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.79  E-value=1.3e-05  Score=78.34  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G   84 (445)
                      +||+|||||++|++||..|++.  |++|+|+|+++..|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            4899999999999999999998  99999999998776

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.78  E-value=0.00018  Score=70.46  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=36.1

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++|+++++|++|+.++++ +.|++.+|+++.+| .||+|++...
T Consensus       222 Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D-~vv~A~G~~p  264 (455)
T 2yqu_A          222 GLTIRTGVRVTAVVPEAKG-ARVELEGGEVLEAD-RVLVAVGRRP  264 (455)
T ss_dssp             TCEEECSCCEEEEEEETTE-EEEEETTSCEEEES-EEEECSCEEE
T ss_pred             CCEEEECCEEEEEEEeCCE-EEEEECCCeEEEcC-EEEECcCCCc
Confidence            8899999999999877654 66777788889998 7999998754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.76  E-value=8.8e-05  Score=72.86  Aligned_cols=36  Identities=28%  Similarity=0.470  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI  204 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            368999999999999999999999999999987654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.73  E-value=9e-06  Score=81.36  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|+||||||.+|+++|..|++ |.+|+|||+....+
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~   61 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT   61 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence            45999999999999999999999 99999999976543

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.72  E-value=1.6e-05  Score=79.57  Aligned_cols=49  Identities=16%  Similarity=0.302  Sum_probs=39.2

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCC---ceEEeccEEEEcCChhHHhhhc
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANG---ETLKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g---~~i~a~~~VV~a~~~~~~~~ll  309 (445)
                      +.+|.+++.|++|..+++++++|.+.+.   .++.|+ .||++++.-.+.+||
T Consensus       225 nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~~~a~-~VILsAGai~SP~LL  276 (526)
T 3t37_A          225 NLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFAD-QIVLCAGALESPALL  276 (526)
T ss_dssp             TEEEECSCEEEEEEEETTEEEEEEEEETTEEEEEEEE-EEEECSHHHHHHHHH
T ss_pred             CeEEEeCCEEEEEEecCCeEEEEEEEecCceEEEeec-ceEEcccccCCcchh
Confidence            7799999999999999888777776533   247787 699999998776655

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.69  E-value=8.6e-05  Score=73.24  Aligned_cols=36  Identities=22%  Similarity=0.461  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI  218 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence            468999999999999999999999999999987654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.69  E-value=2.1e-05  Score=74.82  Aligned_cols=36  Identities=17%  Similarity=0.392  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +..|++|||||++|++||..|++.| +|+|+|+++..
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            3479999999999999999999999 99999998764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.68  E-value=0.00035  Score=69.11  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~   83 (445)
                      ..+++|||||..|+-.|..|++.   |.+|+|+|+.+++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            36899999999999999999999   9999999987664

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.68  E-value=0.00067  Score=66.46  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~   82 (445)
                      ..+|+|||||.+|+-+|..|++.  |.+|+++++.+.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            56899999999999999999999  899999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.67  E-value=0.00033  Score=69.23  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||..|+-.|..|++.   |.+|+++|+.+++.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  226 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL  226 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc
Confidence            46899999999999999999999   99999999987643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=0.00038  Score=69.02  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCce-EEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGET-LKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~-i~a~~~VV~a~~~~~  304 (445)
                      |++++++++|++|+.++++.+.|++.+|++ +.+| .||+|++...
T Consensus       231 gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D-~vi~a~G~~p  275 (500)
T 1onf_A          231 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFD-HVIYCVGRSP  275 (500)
T ss_dssp             TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEES-EEEECCCBCC
T ss_pred             CCEEEECCEEEEEEEcCCceEEEEECCCcEEEECC-EEEECCCCCc
Confidence            899999999999987655446788889987 8998 7999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00038  Score=68.57  Aligned_cols=43  Identities=2%  Similarity=0.111  Sum_probs=35.7

Q ss_pred             CCcEEeCceeeEEEecCCC-cCeEEeCCC-ceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQN-MPNVRLANG-ETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g-~~i~a~~~VV~a~~~~  303 (445)
                      |++|+++++|++|+.++++ .+.|++.+| +++.+| .||+|++..
T Consensus       240 Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D-~vv~a~G~~  284 (479)
T 2hqm_A          240 GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVD-ELIWTIGRK  284 (479)
T ss_dssp             TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEES-EEEECSCEE
T ss_pred             CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcC-EEEECCCCC
Confidence            8999999999999876544 467888899 789998 799999863

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.67  E-value=0.00032  Score=68.77  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=36.0

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCc-eEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGE-TLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~-~i~a~~~VV~a~~~~  303 (445)
                      |++++++++|++|+.++++ +.|++.+|+ ++.+| .||+|++..
T Consensus       221 gv~i~~~~~v~~i~~~~~~-~~v~~~~G~~~i~~D-~vv~a~G~~  263 (463)
T 2r9z_A          221 GIETHLEFAVAALERDAQG-TTLVAQDGTRLEGFD-SVIWAVGRA  263 (463)
T ss_dssp             TCEEESSCCEEEEEEETTE-EEEEETTCCEEEEES-EEEECSCEE
T ss_pred             CCEEEeCCEEEEEEEeCCe-EEEEEeCCcEEEEcC-EEEECCCCC
Confidence            8899999999999876554 678888998 89998 799998764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.67  E-value=3e-05  Score=77.01  Aligned_cols=38  Identities=26%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|++|||||++|+++|+.|++.|.+|+|+|+....+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            45899999999999999999999999999999987654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.62  E-value=3.7e-05  Score=74.87  Aligned_cols=36  Identities=17%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~G   84 (445)
                      ++|+|||||++|++||..|++.|  .+|+|+|+++..+
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            47999999999999999999987  5799999987654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.56  E-value=5.3e-05  Score=75.23  Aligned_cols=37  Identities=32%  Similarity=0.515  Sum_probs=34.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+|++|||||.+|+++|+.|++.|.+|+|+|+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3569999999999999999999999999999999754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.55  E-value=0.00087  Score=64.51  Aligned_cols=35  Identities=26%  Similarity=0.540  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++|+.+.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  179 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR  179 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            57899999999999999999999999999998764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.52  E-value=0.00089  Score=66.32  Aligned_cols=43  Identities=14%  Similarity=0.212  Sum_probs=36.8

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++|+++++|++|+.++++ +.|++.+|+++.+| .||+|++...
T Consensus       237 GV~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~aD-~Vv~a~G~~p  279 (499)
T 1xdi_A          237 GVRLFKNARAASVTRTGAG-VLVTMTDGRTVEGS-HALMTIGSVP  279 (499)
T ss_dssp             TCEEETTCCEEEEEECSSS-EEEEETTSCEEEES-EEEECCCEEE
T ss_pred             CCEEEeCCEEEEEEEeCCE-EEEEECCCcEEEcC-EEEECCCCCc
Confidence            8999999999999987655 67778888889998 7999998764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.51  E-value=0.00025  Score=69.41  Aligned_cols=36  Identities=25%  Similarity=0.502  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            468999999999999999999999999999987554

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.51  E-value=5e-05  Score=75.28  Aligned_cols=37  Identities=11%  Similarity=0.328  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .++++|+|||||.+|+++|..|++++++|+|+|++++
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            3467899999999999999999999999999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.47  E-value=6.8e-05  Score=72.87  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~   82 (445)
                      ++|+|||||++|++||..|++.+  ++|+|+|+++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            47999999999999999999865  79999999865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.46  E-value=0.0015  Score=64.54  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+|+|||||.+|+-.|..|++.|.+|+|+|+.+.
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  228 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT  228 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence            357899999999999999999999999999998654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.44  E-value=8.7e-05  Score=74.98  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~~   83 (445)
                      ..+|++|||||.+|+++|..|++ .|.+|+|+|+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            46999999999999999999999 79999999997553

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.42  E-value=0.00088  Score=65.44  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++|+.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  183 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            46899999999999999999999999999998654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.40  E-value=0.0013  Score=64.76  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            368999999999999999999999999999987654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.38  E-value=0.00071  Score=66.69  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  219 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG  219 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence            46899999999999999999999999999997644

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.33  E-value=0.0018  Score=63.43  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR  205 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            46899999999999999999999999999998654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.32  E-value=0.00067  Score=62.76  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~  178 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  178 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            34689999999999999999999999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.30  E-value=0.002  Score=63.24  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  208 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR  208 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc
Confidence            46899999999999999999999999999998654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.16  E-value=0.0014  Score=61.00  Aligned_cols=43  Identities=26%  Similarity=0.298  Sum_probs=35.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCC-----CceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLAN-----GETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~-----g~~i~a~~~VV~a~~~~  303 (445)
                      |++++++++|++|+.+++++..|++.+     ++++.+| .||++++..
T Consensus       223 gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~  270 (338)
T 3itj_A          223 KIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVS-GLFYAIGHT  270 (338)
T ss_dssp             TEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECS-EEEECSCEE
T ss_pred             CeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeC-EEEEEeCCC
Confidence            789999999999998876666677765     4568898 799999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.13  E-value=0.0013  Score=64.57  Aligned_cols=36  Identities=25%  Similarity=0.473  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI  212 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            468999999999999999999999999999986543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.13  E-value=0.0045  Score=60.79  Aligned_cols=35  Identities=34%  Similarity=0.476  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++|+.+.
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  214 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK  214 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            46899999999999999999999999999998543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.12  E-value=0.0029  Score=62.42  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----CCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHS----QGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~----~G~~V~vlE~~~~   82 (445)
                      ..+|+|||||.+|+-+|..|++    .|.+|+++++.+.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~  218 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG  218 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence            4689999999999999999987    4789999997654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.07  E-value=0.0048  Score=60.75  Aligned_cols=43  Identities=21%  Similarity=0.122  Sum_probs=34.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCc-----eEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGE-----TLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~-----~i~a~~~VV~a~~~~  303 (445)
                      |++|+++++|++|+.++++.+.|++.+++     ++.+| .||+|++..
T Consensus       241 Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D-~vi~a~G~~  288 (483)
T 3dgh_A          241 GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYD-TVLWAIGRK  288 (483)
T ss_dssp             TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEES-EEEECSCEE
T ss_pred             CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcC-EEEECcccc
Confidence            88999999999999876554667776654     68898 799999874

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.07  E-value=0.0051  Score=61.23  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+++|||||..|+=.|..+++.|.+|+|+++..
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~  256 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI  256 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence            3679999999999999999999999999998743

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.03  E-value=0.003  Score=62.30  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||||.+|+-.|..|++.|.+|+++|+.+.
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  232 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT  232 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc
Confidence            46899999999999999999999999999987554

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.03  E-value=0.0045  Score=60.83  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++++.++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK  221 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence            36899999999999999999999999999998543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.85  E-value=0.01  Score=58.45  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence            357999999999999999999999999999873

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.74  E-value=0.0049  Score=56.55  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+++|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~  180 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHRRD  180 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCC
Confidence            34689999999999999999999999999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.59  E-value=0.0023  Score=52.32  Aligned_cols=40  Identities=23%  Similarity=0.415  Sum_probs=33.0

Q ss_pred             ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           43 SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        43 ~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +......+|+|||+|..|...|..|.+.|++|+++|++..
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3334456899999999999999999999999999998643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.47  E-value=0.0024  Score=60.81  Aligned_cols=38  Identities=21%  Similarity=0.333  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  183 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLE  183 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence            35899999999999999999999999999999887654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.26  E-value=0.007  Score=48.42  Aligned_cols=34  Identities=24%  Similarity=0.459  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +.+|+|||+|-.|...|..|.+.|++|+++|++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.25  E-value=0.0046  Score=49.22  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|||+|..|...|..|.+.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999853

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.20  E-value=0.0063  Score=48.66  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +.+|+|+|+|-.|...|..|.++|++|+++|++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.15  E-value=0.0036  Score=57.60  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            368999999999999999999999999999998765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.12  E-value=0.0082  Score=48.80  Aligned_cols=35  Identities=23%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34579999999999999999999999999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.09  E-value=0.0064  Score=57.84  Aligned_cols=38  Identities=34%  Similarity=0.493  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+++|||+|.+|+.+|..|++.|.+|+|+|+.+.+..
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  182 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP  182 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh
Confidence            57899999999999999999999999999999877554

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.06  E-value=0.0045  Score=60.46  Aligned_cols=38  Identities=21%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+.+.+..
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            46899999999999999999999999999999887643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.05  E-value=0.0062  Score=55.29  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ++..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus         2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            345689999999999999999999999999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.01  E-value=0.0058  Score=59.50  Aligned_cols=35  Identities=26%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|.|||.|.+|+++|..|.++|++|++.|++.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            34689999999999999999999999999999865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.98  E-value=0.0059  Score=57.72  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  179 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL  179 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec
Confidence            589999999999999999999999999999987654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.88  E-value=0.0082  Score=55.03  Aligned_cols=32  Identities=34%  Similarity=0.558  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|.|||+|..|...|..|+++|++|+++|++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            47999999999999999999999999999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.85  E-value=0.0078  Score=46.18  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~   81 (445)
                      .+|+|+|+|..|...|..|.+.| ++|++++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            47999999999999999999999 8999999863

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.82  E-value=0.0065  Score=58.91  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+|.|||.|.+|+++|..|+++|++|+++|.....-
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~   41 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence            579999999999999999999999999999876543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.72  E-value=0.0076  Score=55.32  Aligned_cols=36  Identities=31%  Similarity=0.524  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+++|||+|..|+-+|..|++.|.+|+|+|+...
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            346899999999999999999999999999997544

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=95.69  E-value=0.0049  Score=48.34  Aligned_cols=96  Identities=9%  Similarity=-0.079  Sum_probs=44.8

Q ss_pred             eEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeeccc
Q 042352          289 TLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNV  361 (445)
Q Consensus       289 ~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  361 (445)
                      +++|+ +||+|+|+.++.++..+|+       +++...+.+..|+++.|+++||.....    .+          ..+..
T Consensus         5 ~~~Ad-~VIvTvP~~vL~~I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~~----~g----------d~s~~   69 (130)
T 2e1m_B            5 TWTGD-LAIVTIPFSSLRFVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTEA----DW----------KRELD   69 (130)
T ss_dssp             EEEES-EEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCCHH----HH----------HHHHH
T ss_pred             EEEcC-EEEEcCCHHHHhcCcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCCCc----cc----------cccCC
Confidence            68898 7999999999988766544       456778999999999999999643211    00          00110


Q ss_pred             CCCCCCCCceEEEEEec-CC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352          362 APLYGPLDKALISVSLI-GL----FADVMDDNLTAEVIRELSDWFGKST  405 (445)
Q Consensus       362 ~p~~~p~g~~~l~~~~~-~~----~~~~~~~e~~~~~~~~l~~~~~~~~  405 (445)
                      +   ..+|  ++..+.. ++    +..+++ +.++.++..|.+++|+..
T Consensus        70 ~---~~pg--~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~  112 (130)
T 2e1m_B           70 A---IAPG--LYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVD  112 (130)
T ss_dssp             H---HSTT--HHHHHHHHCCCSCCCC-----------------------
T ss_pred             C---CCCe--EEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence            0   0112  2222221 22    344444 778999999999999644

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.66  E-value=0.011  Score=54.23  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||||..|...|..++.+|++|+++|.++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.51  E-value=0.015  Score=46.38  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|+|+|+|..|...|..|.+.|++|+++|++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999975

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.39  E-value=0.01  Score=58.34  Aligned_cols=39  Identities=28%  Similarity=0.551  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ...+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+..
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            457899999999999999999999999999999876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.35  E-value=0.018  Score=48.31  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~   81 (445)
                      ..+|+|||+|..|...|..|.+. |++|+++|++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            45799999999999999999999 99999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.31  E-value=0.017  Score=56.85  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+++|+.+++..
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN  211 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            46899999999999999999999999999999887653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.30  E-value=0.019  Score=55.46  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  185 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL  185 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence            5689999999999999999999999999999987654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.29  E-value=0.026  Score=54.45  Aligned_cols=37  Identities=24%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +...+|.|||+|..|...|..|+++|++|+++|++..
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            3446899999999999999999999999999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.24  E-value=0.016  Score=54.40  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +..+|+|||+|..|...|..|++.|++|++++++
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3468999999999999999999999999999875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.20  E-value=0.019  Score=55.03  Aligned_cols=38  Identities=32%  Similarity=0.525  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ...+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  179 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL  179 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence            35789999999999999999999999999999987764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.17  E-value=0.021  Score=55.43  Aligned_cols=38  Identities=24%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+++|||+|.+|+-+|..|++.|.+|+++|+.+++..
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  185 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR  185 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence            46899999999999999999999999999999876554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.13  E-value=0.022  Score=52.94  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|+|||+|..|.+.|..|+++|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            57999999999999999999999999999974

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.10  E-value=0.021  Score=52.92  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|.|||.|-+|++ +|..|.++|++|++.|++..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            457999999999997 78899999999999998654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.06  E-value=0.02  Score=52.84  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|..|++.|++|+++.|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            479999999999999999999999999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.04  E-value=0.019  Score=55.59  Aligned_cols=37  Identities=32%  Similarity=0.516  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll  183 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN  183 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccc
Confidence            4589999999999999999999999999999987754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.01  E-value=0.023  Score=52.70  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .+|+|||||-.|.+.|..|++.|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.95  E-value=0.021  Score=52.58  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|..|+++|++|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.94  E-value=0.02  Score=53.88  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++|+.+.
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            45899999999999999999999999999998654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.94  E-value=0.034  Score=50.96  Aligned_cols=35  Identities=31%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|.|||.|..|...|..|++.|++|++++++.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999999999999999874

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.92  E-value=0.024  Score=52.04  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ++.+|.|||.|..|...|..|++.|++|++++++..
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            446899999999999999999999999999998754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.86  E-value=0.023  Score=52.01  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            47899999999999999999999999999998654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.86  E-value=0.025  Score=48.97  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|+|||+|-.|...|..|.++|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.84  E-value=0.024  Score=52.25  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..+|+|||+|..|.+.|..|+++|+ +|+++|++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            4589999999999999999999998 999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.78  E-value=0.025  Score=51.89  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|+++|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.74  E-value=0.031  Score=51.53  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..+|+|||||..|.+.|..|+..|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            4589999999999999999999998 999999763

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.71  E-value=0.033  Score=47.85  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|.|||+|..|.+.|..|++.|++|++++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35799999999999999999999999999998765

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.71  E-value=0.028  Score=50.97  Aligned_cols=34  Identities=35%  Similarity=0.508  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +..+|.|||+|..|...|..|+ +|++|+++|++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4678999999999999999999 999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.70  E-value=0.023  Score=56.57  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            357899999999999999999999999999999765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.68  E-value=0.031  Score=53.48  Aligned_cols=37  Identities=35%  Similarity=0.495  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||+|.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM  178 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence            4689999999999999999999999999999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.68  E-value=0.035  Score=53.26  Aligned_cols=38  Identities=39%  Similarity=0.466  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+.+-.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~  189 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA  189 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh
Confidence            56899999999999999999999999999999877643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.67  E-value=0.03  Score=54.64  Aligned_cols=37  Identities=11%  Similarity=0.168  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            3578999999999999999999999999999988664

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.67  E-value=0.026  Score=51.60  Aligned_cols=35  Identities=37%  Similarity=0.436  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            46899999999999999999999999999998654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.67  E-value=0.028  Score=54.95  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||+|.+|+-+|..|++.|.+|+++|+.+++.
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  212 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF  212 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC
Confidence            4689999999999999999999999999999977653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.65  E-value=0.033  Score=52.69  Aligned_cols=36  Identities=28%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            346899999999999999999999999999998753

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.57  E-value=0.03  Score=54.68  Aligned_cols=33  Identities=24%  Similarity=0.430  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|+|||+|..|+..|..|+++|++|+++|++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            468999999999999999999999999999975

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.56  E-value=0.038  Score=51.78  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|+|||+|.-|.+.|..|+++|++|++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            358999999999999999999999999999986

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.53  E-value=0.034  Score=54.21  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|.|||+|..|...|..|+++|++|+++|++.
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34579999999999999999999999999999764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.47  E-value=0.02  Score=55.70  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CC-CEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ-GR-PFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~-G~-~V~vlE~~~~   82 (445)
                      ...+|+|||+|.-|+..|..|+++ |+ +|+++|++..
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            345899999999999999999999 99 9999998865

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.46  E-value=0.029  Score=51.10  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|..|+++|++|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999873

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.44  E-value=0.027  Score=56.16  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-.|..|++.+.+|+|+++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            46899999999999999999999999999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.42  E-value=0.038  Score=53.35  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||.|.-|+..|..|+++|++|++++++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999998754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.41  E-value=0.039  Score=49.97  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|.|||+|..|...|..|+++|++|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            599999999999999999999999999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.41  E-value=0.029  Score=55.99  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46899999999999999999999999999999765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.40  E-value=0.038  Score=50.57  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|...|..|++.|++|++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.39  E-value=0.031  Score=51.64  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            3468999999999999999999999999999987553

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.38  E-value=0.03  Score=51.06  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|.|||.|..|...|..|+++|++|++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.35  E-value=0.038  Score=55.40  Aligned_cols=37  Identities=35%  Similarity=0.513  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  187 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM  187 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc
Confidence            3589999999999999999999999999999987653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.34  E-value=0.019  Score=54.16  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|.|||+|..|.+.|..|+++|++|++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            7999999999999999999999999999876

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.33  E-value=0.043  Score=47.46  Aligned_cols=34  Identities=15%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +...|+|||||-.|...|..|.+.|.+|+|++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3568999999999999999999999999999864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.32  E-value=0.043  Score=53.36  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  183 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence            4689999999999999999999999999999987653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.31  E-value=0.04  Score=51.63  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      |++..+|.|||.|..|...|..|++.|++|++++++.
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4455789999999999999999999999999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.31  E-value=0.044  Score=50.72  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            589999999999999999999998 999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.29  E-value=0.041  Score=53.40  Aligned_cols=37  Identities=11%  Similarity=0.094  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~~   83 (445)
                      ...+|+|||+|.+|+-.|..|++.|.+ |+++++.+.+
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            357899999999999999999999999 9999998654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.29  E-value=0.035  Score=51.44  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            357899999999999999999999999999998654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.28  E-value=0.045  Score=50.24  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      +..+|+|||+|..|.+.|+.|+..|+ +|+++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45689999999999999999999999 99999986

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=94.26  E-value=0.042  Score=53.61  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++|+.+++.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  208 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL  208 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC
Confidence            3689999999999999999999999999999987654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.26  E-value=0.033  Score=51.32  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            46899999999999999999999999999998654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.25  E-value=0.048  Score=53.26  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.21  E-value=0.035  Score=52.02  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.21  E-value=0.042  Score=50.61  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|+.|++.|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999998  999999863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.19  E-value=0.029  Score=48.69  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEE-EecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVL-LEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~v-lE~~~   81 (445)
                      +.+|.|||+|..|.+.|..|++.|++|++ ++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            45899999999999999999999999999 77754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.14  E-value=0.043  Score=53.15  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|+..|..|+++|++|++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.08  E-value=0.043  Score=52.57  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +..+|+|||+|..|+..|..|++ |++|+++|++.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            34589999999999999999998 99999999763

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.07  E-value=0.042  Score=51.39  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..+.+|+|+|||.+|+.+|..|...|. +|+++|++.
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            346789999999999999999999999 999999974

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.05  E-value=0.032  Score=49.86  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +...|+|||+|-.|+..|..|.+.|++|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            34689999999999999999999999999998653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.04  E-value=0.054  Score=47.79  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34689999999999999999999999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=94.01  E-value=0.047  Score=55.17  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+++|+.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            357999999999999999999999999999986

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.97  E-value=0.037  Score=51.20  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            46899999999999999999999999999998654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.94  E-value=0.054  Score=49.99  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCC----CCEEEEecCC
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQG----RPFVLLEASD   81 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G----~~V~vlE~~~   81 (445)
                      .+++..+|.|||+|..|.+.|..|.+.|    ++|++++++.
T Consensus        18 ~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           18 LYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             ----CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             hccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            3445568999999999999999999999    8999999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.86  E-value=0.051  Score=50.15  Aligned_cols=34  Identities=24%  Similarity=0.452  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||.|..|...|..|++.|++|++++++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            4589999999999999999999999999999863

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.83  E-value=0.062  Score=49.46  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      +..+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            45689999999999999999999998 999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.81  E-value=0.073  Score=45.92  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|++.|++|++++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999863

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.81  E-value=0.054  Score=53.71  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  250 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK  250 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence            689999999999999999999999999999987654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.80  E-value=0.055  Score=49.85  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+|+|||+|..|.+.|..|+++|++|+++ ++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            3467999999999999999999999999999 65

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.79  E-value=0.042  Score=50.47  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            46899999999999999999999999999998653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.75  E-value=0.053  Score=50.64  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....+|+|+|||.+|..+|..|...|. +|+++|++
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            356899999999999999999999998 89999987

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.73  E-value=0.08  Score=51.44  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~   82 (445)
                      ...+|+|||||.+|+-+|..+.+.|.+ |+++++.+.
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            357899999999999999999999984 999988654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.69  E-value=0.059  Score=49.36  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|||+|..|.+.|..|+ +|++|+++.|+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.67  E-value=0.079  Score=48.66  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|.|||+|..|...|..|++.|++|++++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.66  E-value=0.068  Score=53.86  Aligned_cols=38  Identities=26%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      ..+++|||+|.+|+-+|..|++.|.+|+++|+.+.+..
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  224 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP  224 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc
Confidence            46899999999999999999999999999999876543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.63  E-value=0.063  Score=49.85  Aligned_cols=33  Identities=33%  Similarity=0.476  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|.|||+|..|...|..|+++|++|++++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999885

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=93.62  E-value=0.076  Score=52.59  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+|+++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            356999999999999999999999999999984

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.62  E-value=0.061  Score=48.68  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|.|||+|..|...|..|++.|++|++++++..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4699999999999999999999999999998754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.54  E-value=0.065  Score=48.99  Aligned_cols=32  Identities=34%  Similarity=0.572  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      +|+|||||..|.+.|+.|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999998  999999863

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.51  E-value=0.068  Score=51.26  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ++.+|+|||.|.-||..|..|++.|++|+.+|-+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4568999999999999999999999999999865

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.49  E-value=0.053  Score=49.11  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|.|||.|..|...|..|++.|++|++++++..
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3699999999999999999999999999998754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.42  E-value=0.03  Score=44.86  Aligned_cols=33  Identities=9%  Similarity=0.243  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|+|||+|..|...|..|.+.|++|++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            467999999999999999999999999999986

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.34  E-value=0.062  Score=52.61  Aligned_cols=32  Identities=16%  Similarity=0.389  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~   80 (445)
                      .+|.|||+|..|+..|..|+++  |++|++++++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            5799999999999999999998  7999999975

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.34  E-value=0.088  Score=48.42  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..+|+|||+|..|.+.|+.|+..|+ +|+++|.+.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            4689999999999999999999988 999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.34  E-value=0.054  Score=53.70  Aligned_cols=35  Identities=37%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            46899999999999999999999999999998654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.29  E-value=0.061  Score=50.36  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            468999999999999999999999999999987543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.29  E-value=0.057  Score=52.66  Aligned_cols=33  Identities=15%  Similarity=0.305  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~   80 (445)
                      +.+|.|||+|..|+..|..|++.  |++|++++++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            35899999999999999999999  8999999976

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.16  E-value=0.064  Score=51.80  Aligned_cols=31  Identities=26%  Similarity=0.495  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|+|||+|..|+..|..|++.|++|++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6999999999999999999999999999975

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.14  E-value=0.093  Score=54.05  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999763

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=93.12  E-value=0.084  Score=48.26  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            3578999999999999999999999999999987653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.11  E-value=0.074  Score=48.45  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|...|..|.+.|++|++++++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3579999999999999999999999999998763

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.05  E-value=0.11  Score=48.09  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||.|..|-+.|..|.+.|++|++++++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            569999999999999999999999999999874

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=93.02  E-value=0.081  Score=51.65  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~G   84 (445)
                      ..+++|||+|.+|+-+|..|++. |.+|+++|+.+.+.
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l  196 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIM  196 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccc
Confidence            46899999999999999999999 99999999987654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.00  E-value=0.089  Score=50.08  Aligned_cols=34  Identities=38%  Similarity=0.521  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.97  E-value=0.13  Score=46.37  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +..|+|.|+|..|...+..|.++|++|+++.|+..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            35799999999999999999999999999988643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.88  E-value=0.11  Score=50.62  Aligned_cols=34  Identities=12%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +.+|.|||.|..|...|..|+++|++|++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999874

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.86  E-value=0.097  Score=47.96  Aligned_cols=32  Identities=41%  Similarity=0.670  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~   81 (445)
                      +|+|||+|..|.+.|..|+++  |++|+++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            699999999999999999996  78999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.85  E-value=0.077  Score=48.70  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+|.|||.|..|...|..|++.|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999999 99999996

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.81  E-value=0.051  Score=50.86  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-------CCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG-------RPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G-------~~V~vlE~~~~   82 (445)
                      .+|.|||+|..|.+.|..|+++|       ++|++++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999999       89999998765

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.77  E-value=0.11  Score=49.20  Aligned_cols=35  Identities=29%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999999999999999999999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.76  E-value=0.11  Score=47.59  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999997 999999753

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.75  E-value=0.13  Score=47.35  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ...+|+|||+|..|.+.|+.|+..|+  +|+++|.+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            34689999999999999999999987  89999974

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.74  E-value=0.11  Score=45.33  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+...|+|.|| |..|...|..|.++|++|+++.|+.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            34568999998 9999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.72  E-value=0.11  Score=48.62  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            689999999999999999999999999999863

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.72  E-value=0.099  Score=51.08  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +.+.+|.|||+|..|...|..|+++|++|++++++
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            34568999999999999999999999999999886

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=92.71  E-value=0.11  Score=50.66  Aligned_cols=35  Identities=17%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++|+.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            46899999999999999999999999999998764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.70  E-value=0.11  Score=47.66  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      ..+|+|||+|-.|.+.|+.|+..|.  +|+++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999987  899999763

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.70  E-value=0.12  Score=46.42  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...++|+|+|-.|.++|..|++.|.+|+|+.|+
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            467999999999999999999999999999876

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.69  E-value=0.082  Score=48.94  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEA   79 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~   79 (445)
                      +|.|||+|..|.+.|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            599999999999999999999999999998

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.68  E-value=0.11  Score=48.63  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..|+|||||..|..+|+.+.+.|++|+++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5799999999999999999999999999997654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.66  E-value=0.13  Score=49.17  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|+|||.|-.|...|..|.+.|++|+|+|++..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4799999999999999999999999999998743

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.65  E-value=0.047  Score=53.07  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|+|+|--|.+.|..|.+.|++|+|+|++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3479999999999999999999999999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.62  E-value=0.11  Score=50.88  Aligned_cols=36  Identities=25%  Similarity=0.510  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||+|.+|+-.|..|++.|.+|+++|+.+.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            468999999999999999999999999999987653

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=92.61  E-value=0.11  Score=46.25  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC----CCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG----RPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G----~~V~vlE~~~~   82 (445)
                      .+|.|||+|..|.+.|..|+++|    ++|++++++..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            47999999999999999999999    79999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.59  E-value=0.11  Score=47.90  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ..+|+|||+|..|.+.|+.|+..|+  +|+++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            4689999999999999999999987  89999974

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=92.55  E-value=0.14  Score=46.08  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR---PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~---~V~vlE~~~   81 (445)
                      ..+|.|||+|-.|.+.|..|.++|+   +|++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3579999999999999999999999   999999874

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.49  E-value=0.15  Score=46.39  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=31.1

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|.||| +|..|.+.|..|++.|++|++++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4799999 999999999999999999999998653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.44  E-value=0.13  Score=47.12  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      ..+|.|||+|..|.+.|..|++.|+  +|++++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3579999999999999999999999  999999874

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.42  E-value=0.14  Score=45.65  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||+|-+|-++|+.|++.|.+|+|+.|+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56899999999999999999999999999988643

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.39  E-value=0.12  Score=44.17  Aligned_cols=31  Identities=32%  Similarity=0.454  Sum_probs=29.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIG-AGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|+||| +|..|...|..|++.|++|++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            589999 9999999999999999999999985

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.38  E-value=0.11  Score=47.43  Aligned_cols=34  Identities=29%  Similarity=0.601  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      ..+|+|||||..|.+.|+.|+.+|+  +|+++|.+.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            3689999999999999999999998  899999865

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.35  E-value=0.15  Score=46.10  Aligned_cols=33  Identities=21%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+ |..|.+.|..|.+.|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999 9999999999999999999999763

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=92.34  E-value=0.13  Score=44.76  Aligned_cols=35  Identities=31%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +.+||+|||||++|+++|..|++.|.+|+|+|++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46899999999999999999999999999999973

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.28  E-value=0.09  Score=50.16  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||+|..|+..|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            69999999999999999999 99999999863

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.28  E-value=0.076  Score=48.72  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC-----C-CCEEEEec
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ-----G-RPFVLLEA   79 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~-----G-~~V~vlE~   79 (445)
                      .+|.|||+|..|...|..|++.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3799999999999999999999     9 99999987

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=92.24  E-value=0.12  Score=53.07  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            4579999999999999999999999999999763

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.23  E-value=0.11  Score=47.73  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            46899999999999999999999999999998654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.22  E-value=0.11  Score=47.67  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~   81 (445)
                      .+|.|||.|..|...|..|++.| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999 9999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.18  E-value=0.15  Score=48.05  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...|+|+|+|..|+.+|..|+..|++|++++++.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.16  E-value=0.11  Score=47.87  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +|+|||+|..|.+.|..|++.|+  +|+++|++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            69999999999999999999999  99999975

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.15  E-value=0.11  Score=47.52  Aligned_cols=32  Identities=34%  Similarity=0.591  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~   80 (445)
                      .+|+|||+|..|.+.|..|+++|  .+|+++|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            37999999999999999999999  689999985

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.08  E-value=0.17  Score=49.65  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|...|..|+++|++|++++++.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.04  E-value=0.12  Score=45.62  Aligned_cols=34  Identities=35%  Similarity=0.525  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..+|+|||+|-.|..+|..|++.|. +|+|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3689999999999999999999997 899999753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.03  E-value=0.17  Score=46.64  Aligned_cols=35  Identities=20%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ....+|+|||||..|.+.|+.|+.+|.  +++++|.+
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            345789999999999999999999987  89999975

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.92  E-value=0.12  Score=46.37  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...++|+|+|-.|.++|+.|++.|.+|+|+.|+
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            467999999999999999999999999999886

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.89  E-value=0.19  Score=51.65  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +.-.+|.|||||..|-..|+.++..|++|+++|.+.
T Consensus       314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          314 QPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             ccccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            345789999999999999999999999999999754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.83  E-value=0.16  Score=45.67  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999998763

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=91.79  E-value=0.14  Score=49.85  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHH--------------------HCCC-CEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLH--------------------SQGR-PFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~--------------------~~G~-~V~vlE~~~~   82 (445)
                      ..+|+|||+|..|+-+|..|+                    +.|. +|+|+++.+.
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            468999999999999999999                    5687 6999998644

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.77  E-value=0.16  Score=46.17  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...++|||+|-.|.++|+.|++.|. +|+|+.|+
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4679999999999999999999998 89999876

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=91.73  E-value=0.11  Score=46.84  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-.|..|++.| +|+++++.+.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            568999999999999999999999 9999987543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.73  E-value=0.17  Score=45.45  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      .+|.|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            369999999999999999999998  899998763

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=91.70  E-value=0.14  Score=45.61  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~   81 (445)
                      +|.|||+|..|.+.|..|++.| ++|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5999999999999999999999 9999999863

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=91.66  E-value=0.14  Score=48.11  Aligned_cols=39  Identities=33%  Similarity=0.530  Sum_probs=34.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC---CEEEEecCC-CCCcc
Q 042352           48 KDRVIVIGA-GLAGLAAATRLHSQGR---PFVLLEASD-AVGGR   86 (445)
Q Consensus        48 ~~dviIIGa-G~~GLsaA~~L~~~G~---~V~vlE~~~-~~GG~   86 (445)
                      ..+|+|||| |..|+.||..+...|.   +|+++|.+. .-||+
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            578999999 9999999999999998   999999875 45665

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=91.65  E-value=0.17  Score=45.93  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||+|..|...|..|.+.|++|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            59999999999999999999999999999864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=91.65  E-value=0.21  Score=46.24  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           46 ERKDRVIVIGA-GLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGa-G~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ++..+|+|||+ |..|.++|+.|+..|.  +|+++|.+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            34568999998 9999999999999985  89999974

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.62  E-value=0.13  Score=48.64  Aligned_cols=34  Identities=9%  Similarity=0.134  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-------CCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG-------RPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G-------~~V~vlE~~~~   82 (445)
                      .+|.|||+|..|.+.|..|+++|       ++|++++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            36999999999999999999999       99999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.60  E-value=0.19  Score=47.47  Aligned_cols=34  Identities=35%  Similarity=0.474  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...|+|||+|..|+.+|..|+..|.+|++++++.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999763

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.60  E-value=0.15  Score=46.59  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAG-LAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG-~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+++|||+| +.|..+|..|...|.+|+|++++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            45789999999 67999999999999999998664

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.58  E-value=0.19  Score=49.08  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|.|||+|..|...|..|+++|++|++++++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            357999999999999999999999999999986

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.52  E-value=0.22  Score=43.81  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC----CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR----PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~----~V~vlE~~~   81 (445)
                      .+|.|||+|..|.+.|..|.++|+    +|++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            479999999999999999999998    999999864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=91.46  E-value=0.16  Score=45.86  Aligned_cols=31  Identities=26%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||+|..|...|..|.+ |++|++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999864

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=91.41  E-value=0.15  Score=46.20  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      +|+|||||..|.+.|+.|+..|+  +|+++|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            69999999999999999999988  899999753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=91.39  E-value=0.076  Score=46.38  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+++|+|+|-.|...|..|.+.|+ |+++|++..
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            34579999999999999999999999 999998643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.30  E-value=0.18  Score=46.23  Aligned_cols=33  Identities=42%  Similarity=0.644  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ..+|+|||+|..|.+.|+.|+..|.  +|+++|.+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3589999999999999999998875  79999975

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=91.30  E-value=0.16  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|++.|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4799999999999999999999999 89998763

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.29  E-value=0.18  Score=46.32  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ..+|+|||+|..|.+.|+.|+..|.  +++++|.+
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            4589999999999999999999987  89999974

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.22  E-value=0.15  Score=48.86  Aligned_cols=34  Identities=18%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+..|||.|.-|+..|..|+++|++|+++|++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678999999999999999999999999999763

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=91.18  E-value=0.062  Score=46.72  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|.|||+|..|.+-|..|.++|++|+.+++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            47999999999999999999999999999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.17  E-value=0.17  Score=49.01  Aligned_cols=33  Identities=15%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...|+|||+|-.|...|..|.+.|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            467999999999999999999999999999974

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.17  E-value=0.19  Score=46.19  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +..+|+|||||-.|.+.|+.|+..|.  .|.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999885  79999864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.16  E-value=0.27  Score=43.44  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      +++|||+|-+|-++|+.|.+.|. +|+|+.|+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 999998863

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=91.16  E-value=0.21  Score=48.81  Aligned_cols=33  Identities=12%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|+++|++|++++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999863

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=91.11  E-value=0.19  Score=52.01  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             CCCcEEEEC--CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIG--AGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIG--aG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||  +|..|+-+|..|++.|.+|+|+++.+
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            346899999  99999999999999999999999876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=91.09  E-value=0.17  Score=43.74  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +..|+|.|| |..|...+..|.++|++|+++.|+.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            357999995 9999999999999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=91.01  E-value=0.18  Score=45.85  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|.+.|++|++++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999998763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.89  E-value=0.18  Score=45.29  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|+|||+|-.|-+.|..|.+.|.+|++++++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            357999999999999999999999999999876

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.84  E-value=0.24  Score=45.01  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34679999999999999999999999999999863

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=90.83  E-value=0.2  Score=45.96  Aligned_cols=34  Identities=26%  Similarity=0.551  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ++.+|+|||||-.|.+.|+.|+..+.  .+.++|.+
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            44689999999999999999999876  79999874

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=90.81  E-value=0.19  Score=45.93  Aligned_cols=32  Identities=34%  Similarity=0.498  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      +|+|||+|..|.+.|+.|+..|.  +|+++|.+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            69999999999999999999987  899999865

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=90.80  E-value=0.21  Score=44.72  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ...++|||+|-+|-++|+.|++.|. +|+|+.|+.
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4679999999999999999999998 899998864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=90.78  E-value=0.28  Score=41.33  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            47999998 9999999999999999999998864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.77  E-value=0.12  Score=49.31  Aligned_cols=30  Identities=23%  Similarity=0.229  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCCEEEEe
Q 042352           49 DRVIVIGAGLAGLAAATRLHS-QGRPFVLLE   78 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE   78 (445)
                      .+|+|||+|..|.+.|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            379999999999999999998 599999998

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=90.74  E-value=0.16  Score=49.94  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            3468999999999998 6999999999999999764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.71  E-value=0.29  Score=45.42  Aligned_cols=33  Identities=30%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..|.|||+|..|.+.|..|++.|++|++++++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            469999999999999999999999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.69  E-value=0.26  Score=44.63  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35689999999999999999999999999999863

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=90.68  E-value=0.18  Score=46.63  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..+|+|||+|.+|+-+|..|++.| +|+++++.
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            468999999999999999999998 69999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.65  E-value=0.2  Score=45.01  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|+|||..|...+..|.++|++|+++.|+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            579999999999999999999999999998864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.64  E-value=0.24  Score=48.33  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|.|||+|..|...|..|+++|++|++++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6999999999999999999999999999986

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=90.58  E-value=0.13  Score=55.00  Aligned_cols=37  Identities=14%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~  320 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS  320 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence            3689999999999999999999999999999987654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=90.56  E-value=0.21  Score=45.10  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~   81 (445)
                      ..+|.|||+|..|.+.|..|++.  |++|++++++.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            35799999999999999999988  67999998763

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.48  E-value=0.28  Score=47.39  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....++|+|+|-.|..+|..|+..|.+|++.|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45789999999999999999999999999999764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.45  E-value=0.29  Score=43.55  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +++|||+|-.|-+.|..|.+.|++|++++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999998863

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.41  E-value=0.21  Score=44.23  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|.+.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            479999999999999999999999999999863

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=90.36  E-value=0.21  Score=53.76  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .+|+|||||..|+-+|..|.+.|. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            489999999999999999999997 899999876

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=90.36  E-value=0.21  Score=49.75  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            47899999999999999999999999999998654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.28  E-value=0.3  Score=44.65  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....++|+|||-+|-++|+.|++.|. +|+|+.|+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            34689999999999999999999998 89999886

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=90.18  E-value=0.31  Score=43.52  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....++|+|+|-+|-++|+.|++.|. +|+|+.|+
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35689999999999999999999996 89999875

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.09  E-value=0.28  Score=50.40  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             CCCcEEEEC--CCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIG--AGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIG--aG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ...+|+|||  +|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~  561 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS  561 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccc
Confidence            346799999  99999999999999999999999876654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=90.06  E-value=0.28  Score=44.06  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ...+++|||+|-+|-++|+.|.+.|. +|+|+.|+.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            35689999999999999999999998 899998763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=89.99  E-value=0.34  Score=41.43  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5999996 9999999999999999999998863

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=89.95  E-value=0.33  Score=43.68  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....++|+|||-+|-++|+.|++.|. +|+|+.|+
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            35689999999999999999999998 69999876

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.93  E-value=0.43  Score=44.99  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .....|.|||+|-.|...|..+.+.|++|.+++..+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            3457899999999999999999999999999987643

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=89.88  E-value=0.21  Score=45.37  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.+||-|..|..-|..|.++|++|++++++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=89.81  E-value=0.37  Score=43.89  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=31.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +..|+|.|| |..|...+..|.++|++|+++.++..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            467999999 99999999999999999999988654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=89.74  E-value=0.34  Score=43.52  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....++|||+|-+|-++|+.|++.|. +|+|+.|+
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            35689999999999999999999996 89999875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=89.73  E-value=0.36  Score=44.68  Aligned_cols=36  Identities=25%  Similarity=0.402  Sum_probs=30.9

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +...|+|.|| |..|...+..|.++|++|+++.++..
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            4568999998 99999999999999999999998754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=89.55  E-value=0.49  Score=40.55  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=29.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHH-HCCCCEEEEecCCC
Q 042352           49 DRVIVIGA-GLAGLAAATRLH-SQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGa-G~~GLsaA~~L~-~~G~~V~vlE~~~~   82 (445)
                      ..|+|.|| |-.|...|..|+ ++|++|+++.|+..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            34999995 999999999999 89999999998643

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=89.54  E-value=0.19  Score=45.43  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||+|..|...|..|.+.|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            479999999999999999999999999998 53

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=89.52  E-value=0.39  Score=47.28  Aligned_cols=47  Identities=13%  Similarity=0.107  Sum_probs=37.4

Q ss_pred             CCcEEeCceeeEEEecCC--CcCeEEeC--CC-----ceEEeccEEEEcCChhHHhh
Q 042352          260 FESILLNTRVLSIDFDEQ--NMPNVRLA--NG-----ETLKSEIGVILAVEEPEADK  307 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~--~~~~V~~~--~g-----~~i~a~~~VV~a~~~~~~~~  307 (445)
                      +++|++++.|++|..+++  ++++|++.  +|     .+++|+ .||+|++.....+
T Consensus       236 n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~-~VIlaaG~~~s~~  291 (504)
T 1n4w_A          236 KVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTE  291 (504)
T ss_dssp             SEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHH
T ss_pred             CcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeC-EEEEccCCCCCHH
Confidence            589999999999998853  46788874  56     358898 7999999976544

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=89.49  E-value=0.27  Score=43.66  Aligned_cols=30  Identities=37%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEA   79 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~   79 (445)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            599999999999999999999999999876

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.48  E-value=0.26  Score=44.54  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...++|+|+|-.|.++|..|++.| +|+|+.|+
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            467999999999999999999999 99999875

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.45  E-value=0.41  Score=42.44  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             CCCcEEEECC-C-HHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGA-G-LAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGa-G-~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +...++|.|| | -.|...|..|+++|++|+++.++.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            4567999998 7 499999999999999999998763

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=89.45  E-value=0.37  Score=45.87  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEe
Q 042352           41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLE   78 (445)
Q Consensus        41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE   78 (445)
                      .+..|+....|.|+|+|-.|...+..+.+.|++|.+++
T Consensus        17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           17 FQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             ----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             EeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            34455667899999999999999999999999999999

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.35  E-value=0.39  Score=41.19  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=29.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|+|.|| |..|...|..|.++|++|.++.|+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5999998 999999999999999999999875

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=89.23  E-value=0.3  Score=47.25  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...|+|+|+|-.|...|..|++.|++|++++++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~   35 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   35 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECC
Confidence            457999999999999999999999999999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=89.14  E-value=0.42  Score=43.58  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....++|+|||-+|-++|+.|++.|. +|+|+.|+
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            34689999999999999999999998 79999886

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=89.12  E-value=0.4  Score=43.12  Aligned_cols=34  Identities=12%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAG-LAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG-~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+++|||+| +.|..+|..|.+.|.+|+|+.+.
T Consensus       164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            45789999999 68999999999999999999743

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=89.08  E-value=0.32  Score=47.22  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--------------------CC-CEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--------------------GR-PFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--------------------G~-~V~vlE~~~~   82 (445)
                      ..+|+|||+|.+|+-+|..|++.                    |. +|+|+++.+.
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            46899999999999999999974                    54 8999988654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=89.07  E-value=0.36  Score=46.15  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEe
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR---PFVLLE   78 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~---~V~vlE   78 (445)
                      ...+|+|+|||-+|.++|..|.+.|.   +|+|++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            45689999999999999999999998   899999

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.06  E-value=0.36  Score=44.06  Aligned_cols=32  Identities=28%  Similarity=0.533  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      +|+|||||..|.+.|+.|+..|+ .|.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999999888 699999763

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=89.03  E-value=0.33  Score=47.58  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~   81 (445)
                      +..+|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   53 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   53 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence            3457999999999998 8899999999999999765

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=88.94  E-value=0.39  Score=42.60  Aligned_cols=35  Identities=9%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             CCCCcEEEECCC-HHHHHHHHHHHHCCCCEEEEecC
Q 042352           46 ERKDRVIVIGAG-LAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG-~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      -...+++|||+| +.|..+|..|.+.|.+|+++.++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            356899999976 79999999999999999999763

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=88.91  E-value=0.44  Score=42.57  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+++|||+|-+|-++|+.|.+.|. +|+|+.|+
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3579999999999999999999997 89999875

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=88.88  E-value=0.4  Score=45.03  Aligned_cols=34  Identities=18%  Similarity=0.164  Sum_probs=30.8

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..|+|.|| |..|...+..|.++|++|+++.++..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            57999998 99999999999999999999988653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=88.85  E-value=0.42  Score=42.97  Aligned_cols=34  Identities=18%  Similarity=0.391  Sum_probs=30.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ...+++|||+ |+.|..+|..|.+.|.+|+++.++
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            4689999996 568999999999999999999874

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=88.75  E-value=0.44  Score=43.84  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            5689999999999999999999997 79999874

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=88.74  E-value=0.48  Score=43.22  Aligned_cols=34  Identities=15%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..|+|+|| |..|...+..|.++|++|+++.|+..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            46999996 99999999999999999999998754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=88.73  E-value=0.48  Score=47.08  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCC---Cc--eE---EeccEEEEcCChhHHhhhc
Q 042352          250 IPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLAN---GE--TL---KSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       250 l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~---g~--~i---~a~~~VV~a~~~~~~~~ll  309 (445)
                      +.+.+.+. ++++|++++.|++|..+++++++|++.+   |+  ++   .++ .||+|++.....+|+
T Consensus       201 ~l~~~~~~-~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~-~VIlaaG~~~sp~lL  266 (546)
T 1kdg_A          201 YLQTALAR-PNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKG-RVILSAGAFGTSRIL  266 (546)
T ss_dssp             HHHHHHTC-TTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEE-EEEECSHHHHHHHHH
T ss_pred             HHHHHhhC-CCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCC-EEEEcCChhcCHHHH
Confidence            44444432 2889999999999998876778888865   64  23   565 799999997654443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.71  E-value=0.46  Score=46.28  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....|+|||+|..|..+|..|...|.+|+++|++.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45689999999999999999999999999999764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=88.60  E-value=0.52  Score=42.57  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           50 RVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        50 dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +|+|.|| |..|-..+..|.++|++|+++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            5999998 999999999999999999999886544

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=88.56  E-value=0.38  Score=43.74  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +.+|.+||=|..|..-|..|.++|++|++++++.
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3579999999999999999999999999999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.54  E-value=0.51  Score=44.82  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            45789999999999999999999999999999764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=88.53  E-value=0.33  Score=43.81  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+|+|||+|-.|..+|.+|++.|. +++|+|..
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999999999997 89999874

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=88.42  E-value=0.42  Score=43.97  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ..+|+|||||-.|.+.|+.|+..+.  .+.++|.+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            4689999999999999999998876  78899864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.36  E-value=0.41  Score=42.21  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999997 78999874

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=88.34  E-value=0.55  Score=43.82  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ....|+|+|+|-.|..+|..|.+.|.+|++.|.+
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999999999999999999999999999864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=88.33  E-value=0.39  Score=45.70  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ....|+|||+|-.|..+|..|...|. +|++++++.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            34679999999999999999999998 899998764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=88.32  E-value=0.53  Score=43.47  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...|.|||.|-.|...|..|+..|++|++++++..
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            45799999999999999999999999999998654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=88.31  E-value=0.54  Score=42.38  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=30.8

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ....++|+| +|-.|.++|..|++.|.+|+++.|+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            346799999 9999999999999999999999875

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=88.00  E-value=0.092  Score=44.74  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|.|||+|-.|...|..|.+.|++|++++++..
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            34699999999999999999999999999987643

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=88.21  E-value=0.35  Score=47.21  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~   81 (445)
                      +..+|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~   52 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   52 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCC
Confidence            3457999999999998 8899999999999999865

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=88.19  E-value=0.52  Score=46.39  Aligned_cols=48  Identities=17%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             CCcEEeCceeeEEEecC-C-CcCeEEeC--CC-----ceEEeccEEEEcCChhHHhhh
Q 042352          260 FESILLNTRVLSIDFDE-Q-NMPNVRLA--NG-----ETLKSEIGVILAVEEPEADKL  308 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~-~-~~~~V~~~--~g-----~~i~a~~~VV~a~~~~~~~~l  308 (445)
                      +++|++++.|++|..++ + ++++|++.  +|     .+++|+ .||+|++.....+|
T Consensus       241 n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~-~VIlaaGa~~sp~l  297 (507)
T 1coy_A          241 KLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKL  297 (507)
T ss_dssp             CEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHH
T ss_pred             CcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeC-EEEEccCccCCHHH
Confidence            58999999999999886 3 46788874  56     258898 79999999865443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=88.16  E-value=0.3  Score=48.05  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--------------CCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--------------GRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--------------G~~V~vlE~~~~~   83 (445)
                      ..++|||||++|+-.|..|++.              ..+|+++|+.+++
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            3699999999999999988753              3689999987664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	6e-31
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-27
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	7e-27
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	7e-26
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-21
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	4e-19
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	9e-15
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-14
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-13
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-12
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-10
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	9e-09
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-08
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	3e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	8e-08
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	8e-08
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	1e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-07
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	6e-07
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	6e-07
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-06
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	4e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	5e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	5e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	5e-06
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	5e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	6e-06
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	1e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	3e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	5e-05
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	5e-05
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	5e-05
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	6e-05
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	6e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	8e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	9e-05
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	9e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-04
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	2e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	2e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	3e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	4e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	4e-04
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	6e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	6e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	6e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	7e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	8e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.001
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	0.002
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	0.002
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.003
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.003

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 6e-31
 Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 12/245 (4%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFI 105
           ++  +VI+IG+G++GLAAA +L S G    LLEA D VGGRV T     ++ D G  +  
Sbjct: 3   KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVT 62

Query: 106 -TAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDK 164
                    +     + L K      +Y         +           L      +  +
Sbjct: 63  GLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQ 122

Query: 165 LLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETS 224
           L   +         ++ +     + ++  L+     D  I+ + +         + L   
Sbjct: 123 LDFNVLN-------NKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKM 175

Query: 225 SRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRL 284
             L + I +                 P  I ++   +S   +   L  ++DE      +L
Sbjct: 176 VNLKEKIKELHQQYKEASEVKP----PRDITAEFLVKSKHRDLTALCKEYDELAETQGKL 231

Query: 285 ANGET 289
                
Sbjct: 232 EEKLQ 236

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  110 bits (274), Expect = 2e-27
 Identities = 59/294 (20%), Positives = 99/294 (33%), Gaps = 41/294 (13%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP 109
           RV VIGAG++GLAAA +L   G    + EA    GG++R+ S DG + D G      +  
Sbjct: 3   RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEG 62

Query: 110 EAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGL 169
           +   L+D  +L L++                  P     + I  + +   S   KL + L
Sbjct: 63  DVTFLID--SLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLL 120

Query: 170 TRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETS----- 224
             I    K   Q+  S E   +       F   ++D    PF  G         S     
Sbjct: 121 EPILWKNKKLSQVSDSHE--SVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSF 178

Query: 225 SRLFDFIFKCLALGDNTI-----------------------------PANGICQIPNQIA 255
             L++   +  ++    I                                G+  + + I 
Sbjct: 179 PELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAIC 238

Query: 256 SKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLL 309
             L  + + LN+RVL +         +   +  ++ S        EE   D ++
Sbjct: 239 KDLREDELRLNSRVLELSCSCTEDSAI---DSWSIISASPHKRQSEEESFDAVI 289

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (271), Expect = 7e-27
 Identities = 50/273 (18%), Positives = 84/273 (30%), Gaps = 14/273 (5%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAYP 109
           V+V+G G++G+AAA  LH  G   V+LEA D VGGR  T        +D G         
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN 61

Query: 110 EAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGL 169
              +L     L   K     ++ ++ +  +                    +    +    
Sbjct: 62  RILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMG 121

Query: 170 TRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFD 229
             I         +    +   ++ L +              F       +  E S+  F 
Sbjct: 122 REIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFL 181

Query: 230 FIFKCLAL----------GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNM 279
           +  K              G       G  Q+  +I   L  + + L   V+ ID      
Sbjct: 182 WYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLG-DRVKLERPVIYIDQTR-EN 239

Query: 280 PNVRLANGETLKSEIGVILAVEEPEADKLLRQP 312
             V   N E  +++  VI A+      K+   P
Sbjct: 240 VLVETLNHEMYEAK-YVISAIPPTLGMKIHFNP 271

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score =  105 bits (262), Expect = 7e-26
 Identities = 51/286 (17%), Positives = 92/286 (32%), Gaps = 26/286 (9%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP 109
            V V+G G++GLA A  L S+G   VLLE+S  +GG V T ++ G+L+++G   F+   P
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREP 61

Query: 110 EAQKLLDYNAL--NLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLI 167
             + L     L   ++     AK  Y      +          + S   P+G+ L     
Sbjct: 62  ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGE 121

Query: 168 GLTRIR--VLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSS 225
             +R     + ++               +        I             F   ++   
Sbjct: 122 LFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMER 181

Query: 226 RLFDFIFKCLAL------------------GDNTIPANGICQIPNQIASKLPFESILLNT 267
                I   +                    G  +    G+  + + +A+ L      +  
Sbjct: 182 EHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDA-AHVGA 240

Query: 268 RVLSIDFDEQNMPNVRLANGETLKSEIG--VILAVEEPEADKLLRQ 311
           RV  +  ++     + +             V+LA       KLLR 
Sbjct: 241 RVEGLARED-GGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP 285

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 93.3 bits (230), Expect = 2e-21
 Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 17/240 (7%)

Query: 50  RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--GFLLDRGFQIFITA 107
            V+++GAG+AGL+AA  L   G    +LEAS+  GGRVRT   +  G+  + G       
Sbjct: 32  HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEK 91

Query: 108 YPEAQKLLDYNALNLQKFY---SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDK 164
           +   ++ +    L L +F      A  +       V +  +        L  P+      
Sbjct: 92  HRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDP----GLLKYPVKPSEAG 147

Query: 165 LLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETS 224
              G      L K  E++  ++   I+         + +I                L   
Sbjct: 148 KSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNED 207

Query: 225 SRLFDFIFKCLALGD-------NTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQ 277
           S  +    + L   D            +G+ ++P  +  +   + +  N +V+ I  ++Q
Sbjct: 208 SGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMY-RDIQDKVHFNAQVIKIQQNDQ 266

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 85.8 bits (210), Expect = 4e-19
 Identities = 26/184 (14%), Positives = 66/184 (35%), Gaps = 1/184 (0%)

Query: 50  RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAY 108
           RVIV+GAG++G++AA RL   G    ++LEA+D +GGR+   +  G  ++ G        
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 61

Query: 109 PEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIG 168
                 +     +  K  +    +     +   +    + +        +   ++++   
Sbjct: 62  GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 121

Query: 169 LTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLF 228
           L+        D+  + + +               ++  +++  +      +     + + 
Sbjct: 122 LSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVP 181

Query: 229 DFIF 232
              F
Sbjct: 182 LATF 185

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 72.5 bits (177), Expect = 9e-15
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDR-GFQIFITAYP 109
            I++G+GL G   A  L    +  +++E  + +GG   T+  +G  + + G  IF T   
Sbjct: 4   YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDK 63

Query: 110 EAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHF 147
                   + +   +F +     Y  +   +      F
Sbjct: 64  YIWD-YVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTF 100

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 2e-14
 Identities = 30/281 (10%), Positives = 67/281 (23%), Gaps = 35/281 (12%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG---------------- 94
           VIV+G G+     +  L   G+  + ++  D  GG   + ++                  
Sbjct: 8   VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67

Query: 95  --------FLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRH 146
                   + +D   +  +        L+  +      F   +  Y   Q      P   
Sbjct: 68  SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANE 127

Query: 147 FWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDS 206
                  L         K  +                   +   ++ +       +    
Sbjct: 128 IEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKE 187

Query: 207 FFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGIC-------QIPNQIASKLP 259
           F          D  L+  +R                  +          ++P   A    
Sbjct: 188 FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSA 247

Query: 260 FE--SILLNTRVLSIDFDEQNMP-NVRLANGETLKSEIGVI 297
               + +L+T +  + + +             T K+ + VI
Sbjct: 248 IYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPL-VI 287

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 68.7 bits (167), Expect = 2e-13
 Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 5/212 (2%)

Query: 47  RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT---DSVDGFLLDRGFQI 103
           +  +++++GAG +G     +L  +G    +++  D +GG          +  +   G  I
Sbjct: 1   KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHI 60

Query: 104 FITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLD 163
           F T        ++ +A  +       K   NGQ  ++               +P  +   
Sbjct: 61  FHTDNETVWNYVNKHAEMMPYVNRV-KATVNGQVFSLPINLHTINQFFSKTCSPDEARAL 119

Query: 164 KLLIGLTRIRVLIKTDEQILTSSEVPIIEL-LRNIGFSDSIIDSFFRPFFGGIFFDKELE 222
               G + I      +E+ L      + E   +        +     P            
Sbjct: 120 IAEKGDSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFN 179

Query: 223 TSSRLFDFIFKCLALGDNTIPANGICQIPNQI 254
                F+  F+ +     T     I    N  
Sbjct: 180 YDDNYFNHKFQGMPKCGYTQMIKSILNHENIK 211

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.2 bits (157), Expect = 3e-12
 Identities = 31/279 (11%), Positives = 64/279 (22%), Gaps = 32/279 (11%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRG---------- 100
           VIV+G GL     +  +   G+  + ++ +   GG   + +    L  R           
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68

Query: 101 -----------FQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWD 149
                       +  +      + LL         F      +          P      
Sbjct: 69  GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128

Query: 150 SIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFR 209
              +L         +  +                   +   +  +         +  F  
Sbjct: 129 LASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTG 188

Query: 210 PFFGGIFFDKELETSSRLFDFIFKCLAL-------GDNTIPANGICQIPNQIASKL--PF 260
                   D  L+          K  +             P  G+ ++P   A       
Sbjct: 189 HALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYG 248

Query: 261 ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILA 299
            + +LN  V  I  +         + GE  + +  +I  
Sbjct: 249 GTYMLNKPVDDIIMENG-KVVGVKSEGEVARCKQ-LICD 285

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 59.5 bits (143), Expect = 1e-10
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLD 98
           V+V+GAG +GL A  RL   GR   ++E +  VGG    +   G   D
Sbjct: 9  DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCD 57

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 53.9 bits (128), Expect = 9e-09
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          VIVIG G +GL AA     +G   +LL+  + +G ++ 
Sbjct: 5  VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLA 42

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88
          DR+ V+G  ++GL AA  L   G    + E S        
Sbjct: 5  DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFG 44

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLD 98
          ++ +IGAG +GL  A  L ++       L E   + GG     S     L 
Sbjct: 6  KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLP 56

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 51.0 bits (121), Expect = 8e-08
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
            I+IGAG AGL  A +L   G+   + +    +G ++            GF  F      
Sbjct: 7   NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSG-------GGFCNFTNLEVT 59

Query: 111 AQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWD 149
               L  N   ++   +    +             H  +
Sbjct: 60  PAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKE 98

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.1 bits (121), Expect = 8e-08
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 48  KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIF 104
           K +V +IGAG +GL     LH  G   V+LE        V      G L      + 
Sbjct: 2   KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD--YVLGRIRAGVLEQGMVDLL 56

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 19/117 (16%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR-------------------TDS 91
           V++IG+G AGLAAA      G   +LLE     GG  +                    D 
Sbjct: 26  VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDK 85

Query: 92  VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFW 148
               + D          PE  K+L  N+ +   + +                     
Sbjct: 86  KQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSH 142

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          V+V+G+G AG +AA      G   +L+E    +GG
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 53

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          V+V+GAG AG  A+      G   +L++ +   GG
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG 56

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 8/99 (8%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
            +VIG G     +A RL   G   ++LE     G        DG      F   +     
Sbjct: 5   AVVIGTGYGAAVSALRLGEAGVQTLMLEM----GQLWNQPGPDG----NIFCGMLNPDKR 56

Query: 111 AQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWD 149
           +    +     L  F     V  N   +       ++  
Sbjct: 57  SSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQ 95

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
            +VIG G+ G A A  L  + +   L E+    G 
Sbjct: 6  EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR 41

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPF--VLLEASDAVGGRVR 88
          ++ V+G+G AG   A  L          + E      G VR
Sbjct: 3  QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR 43

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDG 94
           +++ GAG+ GL+ A  LH  G     LLE+S  +       ++  
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQP 48

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89
          VIV+GAG  G+AA  +L  QG   +L++A D        
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           +VIG GLAGL AA     +G   ++L        
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS 42

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86
          V++IG G  G  AA +    G     +E   A+GG 
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 41

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.6 bits (107), Expect = 5e-06
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 51 VIVIGAGLAGLAAATRL-HSQGRPFVLLEASDAVGGRVRTD 90
          V+V+GAG AGL+AA  +  +      ++E S + GG     
Sbjct: 36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG 76

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          RV+V+G+G+ GL++A  L  +G    +L        
Sbjct: 8  RVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87
          V++IG G AG  AA +    G     +E    +GG  
Sbjct: 8  VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC 44

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 7/102 (6%)

Query: 47  RKDRVIVIGAGLAGLAAATRLHSQGRPF-------VLLEASDAVGGRVRTDSVDGFLLDR 99
           R   + ++G+G +   AA  L               +LE      G VR+         +
Sbjct: 1   RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIK 60

Query: 100 GFQIFITAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVA 141
                     E  +   +  + + +     ++         A
Sbjct: 61  SISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYA 102

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          V+V+G G  G +AA     +G    ++E    +GG
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG 43

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          V++IG+G AGL+ A RL  Q +  ++L       G
Sbjct: 10 VLIIGSGAAGLSLALRLADQHQV-IVLSKGPVTEG 43

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 44 KLERKD-RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
          KL  ++   +VIGAG AG+ AA ++   G+   LL        
Sbjct: 2  KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84
          RV+VIGAG+ GL+ A  +H +    +         
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA 36

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86
          +++IG G  G  AA R    G P VL+E   A+GG 
Sbjct: 8  LLIIGGGPGGYVAAIRAGQLGIPTVLVE-GQALGGT 42

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDA 82
          R+++IGAG+ G   A  L ++G     +L+    
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL 36

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG 94
           +VIG+G  G  AA RL   G P  ++E     G    T   DG
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEM----GRSWDTPGSDG 49

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD 81
          ++ ++GAG A ++ A+ L   G     + E  +
Sbjct: 6  KIALLGAGPASISCASFLARLGYSDITIFEKQE 38

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
            I++GAG  G+ AA RL   G+  +LLE     GG     +   ++        +T +  
Sbjct: 5   YIIVGAGPGGIIAADRLSEAGKKVLLLER----GGPSTKQTGGTYVAPWATSSGLTKF-- 58

Query: 111 AQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFW 148
                D   L  +  ++ +  ++  +  TV        
Sbjct: 59  -----DIPGLF-ESLFTDSNPFWWCKDITVFAGCLVGG 90

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 7/106 (6%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
           V+++G+G  G   A  L   G    + +  +   G          +  +          +
Sbjct: 7   VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQ 66

Query: 111 AQKLLDYNALNLQKF-------YSGAKVYYNGQFHTVADPFRHFWD 149
            Q +     +N           +  +  +     +   DP R+   
Sbjct: 67  GQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSG 112

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86
          VIVIGAG  G  AA +    G    L+E      G+
Sbjct: 6  VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK 41

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86
          +IVIG G  G+AAA R         L+E    +GG 
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALVE-KSRLGGT 38

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 42.2 bits (98), Expect = 9e-05
 Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPE 110
            +++G G +G   A  L S+    ++LE            + DGF+     Q        
Sbjct: 29  YVIVGGGTSGCPLAATL-SEKYKVLVLERGSLPTAYPNVLTADGFV--YNLQQEDDGKTP 85

Query: 111 AQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFW 148
            ++ +  + ++  +                      + 
Sbjct: 86  VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYS 123

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 40 SLNSKLERKDRVIVIGAGLAGLAAATRL--HSQGRPFVLLEASDAVGGRVRT 89
           L+        VI++GAG +GL+AA  +  +       ++E+S A GG    
Sbjct: 44 DLDKFAVSD--VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 16 TINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFV 75
          TIN    R    I  +        +++    R+   I IG G AG   +  L + G   +
Sbjct: 11 TINQWATRI-DEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQL 69

Query: 76 LLEASDAVGGR 86
          +++    +GG 
Sbjct: 70 IVDRWPFLGGS 80

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85
           I IG G  G+A+  R    G+   L+EA   +GG
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIEA-KELGG 38

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 46  ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFI 105
            +K  + V+GAG AGLA A    ++G    L +A   +GG+                  I
Sbjct: 41  VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ------------I 88

Query: 106 TAYPEAQKLLDYNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSI 151
               E  + L Y         +G  +  N   HTV       +D  
Sbjct: 89  PGKEEFYETLRY--YRRMIEVTGVTLKLN---HTVTADQLQAFDET 129

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 50 RVIVIGAGLAGLAAA---TRLHSQGRPFVLLEASDAVGG 85
          R++++G G AG  AA      H +     +++  D +GG
Sbjct: 3  RIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGG 40

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 51  VIVIGAGLAGLAAATRL-----HSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIF 104
           V+++GAG AGL AA  L             +++         + D +      R  +  
Sbjct: 10  VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ----CRTLESL 64

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89
          +I+IG G  GLAAA       +  ++L+           
Sbjct: 6  LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNW 44

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83
           D V+++G GLAG+  A  L + G    +    DA 
Sbjct: 3  NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 51 VIVIGAGLAGLAAATRL------HSQGRPFVLLEASDAVGGRVRT 89
          V+++GAG AGL+AATRL      H +     L+E +  +G    +
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS 79

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84
           +V+GAG  G  AA R    G+   ++E  +  G
Sbjct: 6  TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG 39

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF 95
          ++VIGAG  GL AA    +  +  V +     V G     ++ G 
Sbjct: 6  LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGT 50

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81
          K  V+V+GAGLA ++    L   G   ++    D
Sbjct: 3  KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD 36

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF 95
          +  +++++G+G AG  AA          VL+   +  G    T  V+ +
Sbjct: 4  KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENW 52

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 51 VIVIGAGLAGLAAATRL----HSQGRPFVLLEASDAVGG 85
          +++IG G +G  AA          G    L+E +     
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81
          +V+V+G G  G  AA  +          L+E + 
Sbjct: 4  KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPF--VLLEASDAVGG 85
          + ++GAG AGL AA             L+     +  
Sbjct: 8  LAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS 44

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 51  VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIF 104
            +VIG G  GLA+A R    G    ++E+    G  V    V   ++       
Sbjct: 6   YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHS 59

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAV 83
          +VIV+G+   G  A   L +          E  D +
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 25 TFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLL-EASDAV 83
            ++Q+S  S   +++  +     D  I+ G GL GL  A +L    +  VL+ E     
Sbjct: 6  QIDVQSSLLSDPSKVAGKTY----D-YIIAGGGLTGLTVAAKLTENPKIKVLVIEK---- 56

Query: 84 GGRVRTDS 91
          G     D 
Sbjct: 57 GFYESNDG 64

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 28 IQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLL-EA 79
          I+AS  +  K +S      R    I+ G GL GL  A RL       VL+ E+
Sbjct: 2  IEASLLTDPKDVS-----GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIES 49

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF 95
          ++VIGAG  GL A     S  +  V +       G     ++ G 
Sbjct: 6  LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGT 50

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLE 78
          R+ ++G+G A   AA          +L E
Sbjct: 7  RLCIVGSGPAAHTAAIYAARAELKPLLFE 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.93
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.92
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.92
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.91
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.87
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.87
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.83
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.78
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.73
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.69
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.63
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.62
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.61
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.55
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.54
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.53
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.33
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.32
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.31
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.29
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.28
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.19
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.11
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.0
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.0
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.99
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.97
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.96
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.94
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.91
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.91
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.91
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.88
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.85
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.84
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.83
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.82
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.79
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.78
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.77
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.76
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.73
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.73
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.72
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.7
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.68
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.67
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.65
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.64
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.63
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.61
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.6
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.6
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.6
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.6
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.6
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.58
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.58
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.58
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.57
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.56
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.55
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.55
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.55
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.54
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.52
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.52
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.49
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.48
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.47
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.44
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.37
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.36
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.33
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.29
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.25
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.15
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.87
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.87
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.75
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.72
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.56
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.47
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	97.41
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.39
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.37
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.28
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.25
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.24
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.16
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.1
d2dw4a3	109	Lysine-specific histone demethylase 1, LSD1 {Human	97.07
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.06
d2iida2	113	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.04
d1b5qa2	112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.97
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.96
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.81
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.7
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.66
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.43
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.3
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.3
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.26
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.19
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.06
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.98
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.98
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.73
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.66
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.36
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.17
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.14
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.02
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.91
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.89
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.82
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.74
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.66
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.65
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.65
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.57
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.42
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.42
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.42
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.37
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.35
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.34
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.23
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.22
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.18
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.99
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.92
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.89
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.68
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.66
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.64
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.63
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.58
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.54
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.53
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.53
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.49
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.39
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.34
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.17
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	92.91
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.87
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.86
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.85
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.81
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.29
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.21
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	91.81
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.79
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.7
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.41
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.36
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.34
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.32
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.26
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.13
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.0
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.71
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	90.68
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.68
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.56
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.51
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.43
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.38
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	90.1
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.92
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.56
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.0
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.49
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.05
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.96
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.72
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.5
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.21
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.0
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.57
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	86.01
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.92
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	85.54
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.46
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	85.4
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.12
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	84.3
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	84.18
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	83.8
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.2
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	82.81
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	82.66
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.4
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.06
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	81.55
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.29
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	81.26
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.07
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	80.85
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.48
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.36

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-26  Score=219.35  Aligned_cols=257  Identities=23%  Similarity=0.233  Sum_probs=164.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCeeecccccchhccChhHHHhhcccCCcceeecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSG  128 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~  128 (445)
                      ||||||||++||+||++|+++|++|+||||++++||++.|.+ .+|..+|+|++++...++.+.++++++|++.......
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~   80 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEV   80 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCcceeccCc
Confidence            899999999999999999999999999999999999999986 4788999999999888899999999999887655444


Q ss_pred             cEEE--eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhh-cchHHHhcCCCCcHHHHHHHcCCCHHHHH
Q 042352          129 AKVY--YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLI-KTDEQILTSSEVPIIELLRNIGFSDSIID  205 (445)
Q Consensus       129 ~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~l~~~~~~~~~~~  205 (445)
                      ....  .......................  ................... .........+..++.+++.+...... ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  157 (383)
T d2v5za1          81 ERLIHHVKGKSYPFRGPFPPVWNPITYLD--HNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTES-AK  157 (383)
T ss_dssp             SEEEEEETTEEEEECSSSCCCCSHHHHHH--HHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHH-HH
T ss_pred             cceEEecCcccccccccccchhhhhhhhh--HHHHHHHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchH-HH
Confidence            3332  22222222211111111000000  0000000000000000000 00111122345788888887665544 44


Q ss_pred             HhhhhhhcccccCCccchHHHHHHHHH----------HHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEec
Q 042352          206 SFFRPFFGGIFFDKELETSSRLFDFIF----------KCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFD  275 (445)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~  275 (445)
                      .++.......+.......+........          .....+..+.+.+|++.+++++++.. |++|++|++|++|..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~i~~~~~v~~I~~~  236 (383)
T d2v5za1         158 QLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL-GDRVKLERPVIYIDQT  236 (383)
T ss_dssp             HHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH-GGGEEESCCEEEEECS
T ss_pred             HHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhHHHHHHHHHc-CCeEEecCcceEEEec
Confidence            444444333333333332222111111          11122345678899999999998876 8999999999999988


Q ss_pred             CCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCC
Q 042352          276 EQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQP  312 (445)
Q Consensus       276 ~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p  312 (445)
                      +++ +.|++.||++++|| +||+|+|+..+.++..+|
T Consensus       237 ~~~-v~v~~~~g~~~~ad-~vI~a~p~~~~~~~~~~p  271 (383)
T d2v5za1         237 REN-VLVETLNHEMYEAK-YVISAIPPTLGMKIHFNP  271 (383)
T ss_dssp             SSS-EEEEETTSCEEEES-EEEECSCGGGGGGSEEES
T ss_pred             CCe-EEEEECCCCEEECC-EEEECCCHHHHhhCccCC
Confidence            876 67999999999998 699999999988876554

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.92  E-value=4.8e-25  Score=205.12  Aligned_cols=247  Identities=23%  Similarity=0.292  Sum_probs=150.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceeecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSG  128 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~  128 (445)
                      .||+|||||++||+||++|+++|++|+||||++++||+++|++.+|+.+|.|++++...++.+.+++++.++........
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAAD   80 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEecCCHHHHHHHHHhcccccceecc
Confidence            38999999999999999999999999999999999999999999999999999999888899999999888765432211


Q ss_pred             -----cEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHH
Q 042352          129 -----AKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI  203 (445)
Q Consensus       129 -----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~  203 (445)
                           ...............   ...   .+.................+.    .  ........++.++++.. .....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~-~~~~~  147 (347)
T d2ivda1          81 PAAKRRYVYTRGRLRSVPAS---PPA---FLASDILPLGARLRVAGELFS----R--RAPEGVDESLAAFGRRH-LGHRA  147 (347)
T ss_dssp             SSCCCEEEEETTEEEECCCS---HHH---HHTCSSSCHHHHHHHHGGGGC----C--CCCTTCCCBHHHHHHHH-TCHHH
T ss_pred             ccccceeeeccccccccccc---hhh---hhhhhhccchhhHHHHhhhhh----h--hccccccccHHHHHHhh-hhcch
Confidence                 111122222211111   000   011111111111111111000    0  01112345666666553 22333


Q ss_pred             HHHhhhhhhcccccCCccchHH-----HHHH-----------HHH--HH------------hhcCCCccccCccccHHHH
Q 042352          204 IDSFFRPFFGGIFFDKELETSS-----RLFD-----------FIF--KC------------LALGDNTIPANGICQIPNQ  253 (445)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~--~~------------~~~g~~~~~~gG~~~l~~~  253 (445)
                      ......++....+.........     .+..           ...  ..            ...+....+.+|++.++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  227 (347)
T d2ivda1         148 TQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDA  227 (347)
T ss_dssp             HHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHH
T ss_pred             hccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhccccccccccccccCcccccCCchHHHHHH
Confidence            3333333333322222211110     0000           000  00            0112345678999999999


Q ss_pred             HHhcCCCCcEEeCceeeEEEecCCCcCeEEeC-CC--ceEEeccEEEEcCChhHHhhhcCC
Q 042352          254 IASKLPFESILLNTRVLSIDFDEQNMPNVRLA-NG--ETLKSEIGVILAVEEPEADKLLRQ  311 (445)
Q Consensus       254 l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~-~g--~~i~a~~~VV~a~~~~~~~~ll~~  311 (445)
                      |.+.+ |++|++|++|++|+.++++ +.|++. +|  ++++|| +||+|+|++.+.+|+.+
T Consensus       228 l~~~~-g~~i~~~~~V~~I~~~~~~-~~v~~~~~~~~~~~~ad-~VV~a~p~~~~~~Ll~~  285 (347)
T d2ivda1         228 LAASL-GDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVA-QVVLAAPAHATAKLLRP  285 (347)
T ss_dssp             HHHHH-GGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECS-EEEECSCHHHHHHHHTT
T ss_pred             HHHHh-hcccccCCEEEEEEEeCCe-EEEEEEcCCeEEEEECC-EEEECCCHHHHHHhccC
Confidence            99988 8999999999999998876 444443 44  358898 79999999999999987

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.6e-25  Score=198.82  Aligned_cols=245  Identities=16%  Similarity=0.203  Sum_probs=139.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCC------------------------eeeccc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG------------------------FLLDRG  100 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g------------------------~~~d~G  100 (445)
                      |.+.|||||||||++||+||++|+++|++|+||||++.+||+++++..++                        +.+|.+
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   81 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   81 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccC
Confidence            56789999999999999999999999999999999999999999875432                        334444


Q ss_pred             ccchhccChhHHHhhcccC----CcceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHH-Hhhh-hhhh
Q 042352          101 FQIFITAYPEAQKLLDYNA----LNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLL-IGLT-RIRV  174 (445)
Q Consensus       101 ~~~~~~~~~~~~~l~~~lg----l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~  174 (445)
                      ++.+..... ...++...+    +.+.. .....++.++....++......      +.........+.. ..+. ....
T Consensus        82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  153 (297)
T d2bcgg1          82 PKFLMANGE-LTNILIHTDVTRYVDFKQ-VSGSYVFKQGKIYKVPANEIEA------ISSPLMGIFEKRRMKKFLEWISS  153 (297)
T ss_dssp             CCBEETTSH-HHHHHHHHTGGGTCCEEE-CCCEEEEETTEEEECCSSHHHH------HHCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCc-ceeeeeeccccccccccc-cCcccccccCCccccccchhhh------hhccccccccchhhhhhhhhhhh
Confidence            444322222 222221111    11211 1233455666666554322111      1111111111110 0110 1111


Q ss_pred             hhc---chHHHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHH-----HHHHH--HHHhhcCCCcccc
Q 042352          175 LIK---TDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSR-----LFDFI--FKCLALGDNTIPA  244 (445)
Q Consensus       175 ~~~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~g~~~~~~  244 (445)
                      ...   ........+..++.++++..++.....+.+ ...............+..     .....  ......++..+|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (297)
T d2bcgg1         154 YKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFI-GHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPM  232 (297)
T ss_dssp             CBTTBGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHH-HHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEET
T ss_pred             hhhccccchhhhcccchhhhhhhhhhccCHHHHHHH-HHHHhhhccccccchhhhhhhhhhhhhhhcccccccCcceecc
Confidence            100   011122345678999999888766543333 222222222221111111     11111  1223446778999


Q ss_pred             CccccHHHHHHhcCC--CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEc
Q 042352          245 NGICQIPNQIASKLP--FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILA  299 (445)
Q Consensus       245 gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a  299 (445)
                      ||++.|+++|++.++  |++|++|++|++|..++++ .+.+.+.+|++++|| +||++
T Consensus       233 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad-~VI~~  289 (297)
T d2bcgg1         233 YGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAP-LVIAD  289 (297)
T ss_dssp             TCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECS-CEEEC
T ss_pred             CcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECC-EEEEC
Confidence            999999999998775  9999999999999876543 233334678899998 58886

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.91  E-value=1.8e-23  Score=197.17  Aligned_cols=262  Identities=16%  Similarity=0.125  Sum_probs=155.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc--CCeeecccccchhccChhHHHhhcccCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV--DGFLLDRGFQIFITAYPEAQKLLDYNALNLQ  123 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~  123 (445)
                      .+.++|+|||||++||+||++|+++|++|+|||+++++||++.|+..  .|+.+|.|++++...++.+.+++++++++..
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~  107 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN  107 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHHhCCccc
Confidence            35579999999999999999999999999999999999999998754  5799999999988888899999999888765


Q ss_pred             eec---CCcEEEeCCeeEeccCCccchHHHHHhh--cCCccchHHHHHHhhhhhhhh---hcchHHHhcCCCCcHHHHHH
Q 042352          124 KFY---SGAKVYYNGQFHTVADPFRHFWDSIKSL--ANPIGSVLDKLLIGLTRIRVL---IKTDEQILTSSEVPIIELLR  195 (445)
Q Consensus       124 ~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~l~  195 (445)
                      .+.   ....++..+..................+  .....................   ..........+..+..+++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (370)
T d2iida1         108 EFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLI  187 (370)
T ss_dssp             EECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHHHHHH
T ss_pred             eeeccCCceEEecCCccccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHH
Confidence            432   2344555553332211100000000000  000000001000111110000   00001112234556677776


Q ss_pred             HcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEec
Q 042352          196 NIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFD  275 (445)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~  275 (445)
                      ............+..............  .............+....+.+|++.++++|++.. |++|++|++|++|+.+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-g~~i~~~~~V~~I~~~  264 (370)
T d2iida1         188 KEGDLSPGAVDMIGDLLNEDSGYYVSF--IESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDI-QDKVHFNAQVIKIQQN  264 (370)
T ss_dssp             HTSCCCHHHHHHHHHHTTCGGGTTSBH--HHHHHHHHHHTTCCCEEEETTCTTHHHHHHHHHT-GGGEESSCEEEEEEEC
T ss_pred             HhccccHHHHHHhhccccccchhhhHH--HhhhhhhhhhccccccccchhhHHHHHHHHHHhc-CCccccCceEEEEEEe
Confidence            644333222222222111111111110  0111111122233456678999999999999887 8999999999999999


Q ss_pred             CCCcCeEEe--C--CCceEEeccEEEEcCChhHHhhhcCCC
Q 042352          276 EQNMPNVRL--A--NGETLKSEIGVILAVEEPEADKLLRQP  312 (445)
Q Consensus       276 ~~~~~~V~~--~--~g~~i~a~~~VV~a~~~~~~~~ll~~p  312 (445)
                      ++++ .|.+  .  ++++++|| +||+|+|+..+.++..+|
T Consensus       265 ~~~v-~v~~~~~~~~~~~~~aD-~VI~A~p~~~l~~i~~~p  303 (370)
T d2iida1         265 DQKV-TVVYETLSKETPSVTAD-YVIVCTTSRAVRLIKFNP  303 (370)
T ss_dssp             SSCE-EEEEECSSSCCCEEEES-EEEECSCHHHHTTSEEES
T ss_pred             CCeE-EEEEEecCCCeEEEEee-EEEecCCHHHHhhCccCC
Confidence            8763 3443  2  34579998 799999999887765443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.87  E-value=1.2e-21  Score=182.61  Aligned_cols=76  Identities=36%  Similarity=0.549  Sum_probs=71.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      ++|+|||||++||+||++|+++|++|+|||+++++||++++++.+|+.+|.|++++...++.+.++++++++....
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~   77 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQ   77 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEeCCCHHHHHHHHHhCCcccc
Confidence            5799999999999999999999999999999999999999999999999999999988889999999998876543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.83  E-value=5.5e-21  Score=176.66  Aligned_cols=228  Identities=14%  Similarity=0.171  Sum_probs=155.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec---cCCeeecccccchhccChhHHHhhcccCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS---VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~---~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~  124 (445)
                      ..+|+|||||++||+||+.|+++|++|+|+|+++++||++++..   .++..++.|+|.|+...+.+.++++.+. ++.+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~~~-~~~~   80 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHA-EMMP   80 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTS-CEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHHhh-hhhh
Confidence            46899999999999999999999999999999999999998874   5678999999999888888888887653 4555


Q ss_pred             ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352          125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII  204 (445)
Q Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~  204 (445)
                      .........+|++..++-.    ......+...... .+.....+..   ..    .....+..++.+++.+ .+++.+.
T Consensus        81 ~~~~~~~~~~g~~~~~P~~----~~~i~~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~~n~ee~~~~-~~G~~ly  147 (314)
T d2bi7a1          81 YVNRVKATVNGQVFSLPIN----LHTINQFFSKTCS-PDEARALIAE---KG----DSTIADPQTFEEEALR-FIGKELY  147 (314)
T ss_dssp             CCCCEEEEETTEEEEESCC----HHHHHHHTTCCCC-HHHHHHHHHH---HS----CCSCSSCCBHHHHHHH-HHCHHHH
T ss_pred             hccccceeecceeeccCcc----HHHHHHhcccccc-hHHHHHHHHH---hh----hcccCCchhhhHHHHH-hchhhhH
Confidence            5555667778887766433    2222222222111 1111111000   00    0111234578888876 4789999


Q ss_pred             HHhhhhhhcccccCCccchHHHHHHHHH-------HHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCC
Q 042352          205 DSFFRPFFGGIFFDKELETSSRLFDFIF-------KCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQ  277 (445)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~  277 (445)
                      +.++.++....|+.++.++++.+.....       ..+...-..+|.+|+.++++.|.+.- +++|++|+.+.       
T Consensus       148 e~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~~~d~~yf~d~~q~~Pk~Gyt~~~e~mL~~~-~i~v~ln~~~~-------  219 (314)
T d2bi7a1         148 EAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHE-NIKVDLQREFI-------  219 (314)
T ss_dssp             HHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCST-TEEEEESCCCC-------
T ss_pred             HhhcCcchhhhhccCCcccchhhhhccceeccccccccchhhheeecccHHHHHHHHHhCC-CCeeecccccc-------
Confidence            9999999999999888777554321110       00111112478999999999998764 77888887742       


Q ss_pred             CcCeEEeCCCceEEeccEEEEcCChhHHh
Q 042352          278 NMPNVRLANGETLKSEIGVILAVEEPEAD  306 (445)
Q Consensus       278 ~~~~V~~~~g~~i~a~~~VV~a~~~~~~~  306 (445)
                              +++....+ +||.|.|++.+-
T Consensus       220 --------~~~~~~~d-~vI~TgpiD~~f  239 (314)
T d2bi7a1         220 --------VEERTHYD-HVFYSGPLDAFY  239 (314)
T ss_dssp             --------GGGGGGSS-EEEECSCHHHHT
T ss_pred             --------ccccccce-eEEEeccHHHHh
Confidence                    23334566 799999998763

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=8.3e-20  Score=167.61  Aligned_cols=228  Identities=12%  Similarity=0.172  Sum_probs=150.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeee-cccccchhccChhHHHhhcccCCcceeec
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLL-DRGFQIFITAYPEAQKLLDYNALNLQKFY  126 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~-d~G~~~~~~~~~~~~~l~~~lgl~~~~~~  126 (445)
                      ++||+|||||+|||+||+.|+++|++|+|+|+++++||++++.+.+|..+ +.|+|+|+..++.+.+++.++. .+..+.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~-~~~~~~   79 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLV-EFNRFT   79 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTS-CBCCCC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCEEEeecCcEEEEecchHHHHHhhccc-cceeec
Confidence            47999999999999999999999999999999999999999998888754 8899999888888888887643 455555


Q ss_pred             CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHH
Q 042352          127 SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDS  206 (445)
Q Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~  206 (445)
                      .......+++...+|...    ..+..+....  ..+.....+....      .........++.+++.+ .+++.+.+.
T Consensus        80 ~~~~~~~~~~~~~~P~~~----~~i~~l~~~~--~~~~~~~~i~~~~------~~~~~~~~~n~ee~~~~-~~G~~lye~  146 (298)
T d1i8ta1          80 NSPLAIYKDKLFNLPFNM----NTFHQMWGVK--DPQEAQNIINAQK------KKYGDKVPENLEEQAIS-LVGEDLYQA  146 (298)
T ss_dssp             CCCEEEETTEEEESSBSH----HHHHHHHCCC--CHHHHHHHHHHHT------TTTCCCCCCSHHHHHHH-HHHHHHHHH
T ss_pred             cccceeeeceeEEecccH----HHHHHhhhhh--cHHHHHHHHHHHH------hhcccccchhHHHHHHH-hhchhHHHh
Confidence            556677888887764332    2222222111  1111111111100      00111234577777765 377888999


Q ss_pred             hhhhhhcccccCCccchHHHHHHHHH-------HHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCc
Q 042352          207 FFRPFFGGIFFDKELETSSRLFDFIF-------KCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNM  279 (445)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~  279 (445)
                      ++.++....|+.++.++++.....+.       ..+......+|.+|+..+++.|.+.   .+|++|+.-....      
T Consensus       147 ff~~Yt~K~Wg~~p~eL~~~~~~ripir~~~~~~yf~d~~q~~pk~Gyt~~~~~~l~~---~~i~l~~~~~~~~------  217 (298)
T d1i8ta1         147 LIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEG---VDVKLGIDFLKDK------  217 (298)
T ss_dssp             HTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHTT---SEEECSCCGGGSH------
T ss_pred             cccchhhhccccCcccccccccccccccccccchhhhcceEEEEecccchHHHHHhcC---CceEecccccchh------
Confidence            99999999999888776543211000       0011112356999999999999985   4677665321100      


Q ss_pred             CeEEeCCCceEEeccEEEEcCChhHH
Q 042352          280 PNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       280 ~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                            +.....++ .||.|.|.+.+
T Consensus       218 ------~~~~~~~~-~vi~tg~iD~~  236 (298)
T d1i8ta1         218 ------DSLASKAH-RIIYTGPIDQY  236 (298)
T ss_dssp             ------HHHHTTEE-EEEECSCHHHH
T ss_pred             ------hhhhccCC-eEEEcCcHHHh
Confidence                  11123455 69999998865

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.73  E-value=1.1e-17  Score=152.16  Aligned_cols=61  Identities=36%  Similarity=0.625  Sum_probs=56.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcceeeeccCCeeecccccchhccCh
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP  109 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~  109 (445)
                      +||+|||||++||+||+.|+++|+ +|+||||++++||+++|.+.+|+.+|.|++++...+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~   62 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG   62 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEecCCeEEeccch
Confidence            489999999999999999999996 7999999999999999999999999999998866443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-17  Score=157.60  Aligned_cols=88  Identities=33%  Similarity=0.464  Sum_probs=77.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc-cChhHHHhhcccCCccee
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT-AYPEAQKLLDYNALNLQK  124 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~  124 (445)
                      .+..+|||||||++||+||+.|+++|++|+|||+++++|||++|++.+|+.+|+|++++++ .++.+.++++++|++..+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~   82 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK   82 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCccee
Confidence            4567899999999999999999999999999999999999999999999999999999875 456788999999998877


Q ss_pred             ecCCcEEEe
Q 042352          125 FYSGAKVYY  133 (445)
Q Consensus       125 ~~~~~~~~~  133 (445)
                      ......++.
T Consensus        83 ~~~~~~~~~   91 (449)
T d2dw4a2          83 IKQKCPLYE   91 (449)
T ss_dssp             CCCCCCEEC
T ss_pred             cCCCceEEe
Confidence            665544443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.63  E-value=2.2e-16  Score=143.14  Aligned_cols=52  Identities=15%  Similarity=0.141  Sum_probs=41.5

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      +.+.|.+.+.  |++|+.+++|++|+.+++ .++|++++| +++|+ .||+|+++|.
T Consensus       153 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~V~t~~g-~i~a~-~vV~AaG~~s  206 (276)
T d1ryia1         153 VCKAYVKAAKMLGAEIFEHTPVLHVERDGE-ALFIKTPSG-DVWAN-HVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECSSS-SEEEEETTE-EEEEE-EEEECCGGGT
T ss_pred             chhHHHHHHHHcCCEEecceEEEeEEeecc-eEEEecCCe-EEEcC-EEEECCCccH
Confidence            4444444332  999999999999998764 588999888 68998 6999999985

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.62  E-value=7e-16  Score=140.14  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=45.2

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ  311 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~  311 (445)
                      .+..+|.+.++  |++|+.|++|++|+.++++ +.|.+++| +++|+ .||+|+++|. .+|++.
T Consensus       151 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~V~t~~g-~i~a~-~VViAaG~~s-~~l~~~  211 (281)
T d2gf3a1         151 NCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTAD-KLIVSMGAWN-SKLLSK  211 (281)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEE-EEEECCGGGH-HHHGGG
T ss_pred             ccccccccccccccccccCCcEEEEEEEECCE-EEEEECCc-EEEcC-EEEECCCCcc-hhhHHh
Confidence            34444444332  9999999999999998876 78999988 68998 6999999986 345433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.61  E-value=2.6e-16  Score=140.47  Aligned_cols=60  Identities=23%  Similarity=0.331  Sum_probs=48.3

Q ss_pred             ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhh
Q 042352          248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKL  308 (445)
Q Consensus       248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~l  308 (445)
                      ..+.+.|.+.++  |++|+++++|++|..+++++..|.+++|++++|+ .||+|++.....++
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~-~vI~AtGg~S~p~~  171 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN-HVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS-CEEECCCCSSSGGG
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC-eEEEccCCcccccc
Confidence            345555555443  9999999999999998877778999999999998 69999998765544

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.5e-13  Score=128.80  Aligned_cols=161  Identities=12%  Similarity=0.056  Sum_probs=97.0

Q ss_pred             EEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHH--HhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHh
Q 042352          130 KVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLL--IGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSF  207 (445)
Q Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~  207 (445)
                      +++.+|++...|.      .....+....+.+.+|-+  +.+..........+.+...++.++.+|++..++.+.....+
T Consensus       259 ~v~~~g~~~~VP~------sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~e~l~~~~l~~~~~~~i  332 (491)
T d1vg0a1         259 LAFREGTVEQVPC------SRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFV  332 (491)
T ss_dssp             EEESSSSEEECCC------SHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGCHHHHHTTTTSBHHHHHTTSSSCHHHHHHH
T ss_pred             EEecCCeEEECCC------CHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCccccccccCCcHHHHHHHcCCChHHHHHH
Confidence            3445566665543      223334455555555432  22222222223334455677899999999999988866665


Q ss_pred             hhhhhcccccCCccchHHHHHHH---HHH--HhhcCCCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEec--CCC
Q 042352          208 FRPFFGGIFFDKELETSSRLFDF---IFK--CLALGDNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFD--EQN  278 (445)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~--~~~  278 (445)
                      ...+  +++..+.......+..+   +..  .+......||..|.+.|++++++...  |+.+.||+.|++|..+  +++
T Consensus       333 ~~ai--al~~~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~  410 (491)
T d1vg0a1         333 LHSI--AMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRK  410 (491)
T ss_dssp             HHHT--TC--CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCC
T ss_pred             Hhhe--eccCCCCccHHHHHHHHHHHHHHHHhhCCCCeEeecCCcchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCe
Confidence            4322  23322222222222221   111  12223466899999999999999775  9999999999999885  344


Q ss_pred             cCeEEeCCCceEEeccEEEEc
Q 042352          279 MPNVRLANGETLKSEIGVILA  299 (445)
Q Consensus       279 ~~~V~~~~g~~i~a~~~VV~a  299 (445)
                      +.+|...+|+++.++ .||+.
T Consensus       411 ~~~v~~~~g~~i~~k-~vI~~  430 (491)
T d1vg0a1         411 CKAVIDQFGQRIISK-HFIIE  430 (491)
T ss_dssp             EEEEEETTSCEEECS-EEEEE
T ss_pred             EEEEEccCCcEEecC-eEEEC
Confidence            567888899999998 46654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.54  E-value=3.1e-15  Score=133.54  Aligned_cols=43  Identities=28%  Similarity=0.582  Sum_probs=39.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      |.+.+||+|||||++||+||+.|+++|++|+||||++.+|+++
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence            3456899999999999999999999999999999999998654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.53  E-value=5.4e-14  Score=128.99  Aligned_cols=43  Identities=16%  Similarity=0.071  Sum_probs=39.8

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE  304 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~  304 (445)
                      |++|+.|++|++|+.+++++++|.+++| +++|+ +||+|++.|.
T Consensus       162 gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~-~VV~aaG~~s  204 (305)
T d1pj5a2         162 GVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPAD-IVVSCAGFWG  204 (305)
T ss_dssp             TCEEECSCCEEEEEEETTEEEEEEETTE-EEECS-EEEECCGGGH
T ss_pred             cccccCCceEEEEEEeCCEEEEEeccce-eEECC-EEEEecchhH
Confidence            9999999999999999988888999888 69998 7999999985

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.33  E-value=8.3e-13  Score=121.10  Aligned_cols=42  Identities=31%  Similarity=0.557  Sum_probs=38.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      .+.+||+|||||++||+||+.|+++|++|+|+||.+..||.+
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            356999999999999999999999999999999999998854

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=8.7e-13  Score=109.40  Aligned_cols=67  Identities=27%  Similarity=0.365  Sum_probs=55.5

Q ss_pred             ccCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           18 NSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..++.+|..|+...+-...+.    .+....++|+|||||++||+||++|+++|++|+|+|+.+.+||+..
T Consensus        17 ~~~~~~C~~Np~~g~e~~~~~----~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          17 VGKVTSCLVNPRACHETKMPI----LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             TTCCCCCSSCTTTTCTTTSCC----CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             cCCeeEEeeCccccCcccccc----CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            478999999997665543332    2334568999999999999999999999999999999999999664

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.31  E-value=3.9e-12  Score=115.37  Aligned_cols=42  Identities=38%  Similarity=0.607  Sum_probs=39.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++.+||+|||||++||++|+.|+++|.+|+|||+++.+||.-
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW   46 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW   46 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccc
Confidence            456899999999999999999999999999999999999854

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.29  E-value=2.6e-12  Score=119.25  Aligned_cols=53  Identities=28%  Similarity=0.357  Sum_probs=43.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeeccCCeee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLL   97 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~   97 (445)
                      |++..+|+|||||+|||+||..|+++|  ++|+||||++.+||........|...
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~   55 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKL   55 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCccc
Confidence            456678999999999999999999876  59999999999999765444444333

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.28  E-value=2.9e-12  Score=118.21  Aligned_cols=43  Identities=37%  Similarity=0.594  Sum_probs=39.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+..||+|||||++||+||+.|+++|++|+|+||.+..||.+
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTG
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            4556899999999999999999999999999999999998854

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.19  E-value=8.2e-12  Score=114.77  Aligned_cols=43  Identities=28%  Similarity=0.495  Sum_probs=39.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ..+.+||+|||||++||+||+.|+++|.+|+|+||.+..||.+
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S   58 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS   58 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            3456899999999999999999999999999999999988854

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.11  E-value=7.2e-11  Score=105.17  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=38.0

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA  305 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~  305 (445)
                      +++++++++|++|...+++ +.|+++||++++++ .+|.|.+.+..
T Consensus       110 ~~~~~~~~~v~~~~~~~~~-v~v~~~dG~~~~~d-~~v~adG~~s~  153 (265)
T d2voua1         110 PERYHTSKCLVGLSQDSET-VQMRFSDGTKAEAN-WVIGADGGASV  153 (265)
T ss_dssp             STTEETTCCEEEEEECSSC-EEEEETTSCEEEES-EEEECCCTTCH
T ss_pred             cceeecCcEEEEEEeeCCc-eEEEECCCCEEEEE-EEecccccccc
Confidence            6799999999999988765 78999999999998 69998887654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.00  E-value=1.1e-09  Score=102.47  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +++||||||||++|+.+|+.|+++|++|+|||+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4699999999999999999999999999999984

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.7e-09  Score=80.96  Aligned_cols=41  Identities=12%  Similarity=0.117  Sum_probs=36.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVE  301 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~  301 (445)
                      |+++++|+.|++|..++++.+.|++.+|+++.+| .||+|++
T Consensus        76 GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D-~vi~a~G  116 (116)
T d1gesa2          76 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVD-CLIWAIG  116 (116)
T ss_dssp             SCEEECSCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSC
T ss_pred             CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcC-EEEEecC
Confidence            8999999999999988776678999999999998 7999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.99  E-value=2.8e-09  Score=98.30  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=36.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR   86 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~   86 (445)
                      .+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~   43 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCc
Confidence            489999999999999999999999999999998777663

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.97  E-value=2e-10  Score=100.38  Aligned_cols=73  Identities=26%  Similarity=0.358  Sum_probs=57.8

Q ss_pred             cccCCCCccccccccCCCCccccc-ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352           17 INSKPHRFTFNIQASSSSSSKQLS-LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s   89 (445)
                      ...+++.|..|+...........+ ...+.....+|+|||||++||+||..|+++|++|+|+|+++.+||....
T Consensus        17 ~~~~~~~c~~n~~~~~e~~~~~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          17 IGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             HSSSCCCCSSCTTTTTHHHHCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceeeeecCcccChHHhcCCCCCccCcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            356788899888666544333322 3334556799999999999999999999999999999999999997754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=1.1e-10  Score=101.88  Aligned_cols=44  Identities=27%  Similarity=0.457  Sum_probs=41.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      |.++|||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            45679999999999999999999999999999999999999774

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=1.5e-09  Score=92.57  Aligned_cols=38  Identities=37%  Similarity=0.464  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG   85 (445)
                      .|||||||||++|++||.++++.|.+++|+|++ +.+|+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~   40 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMM   40 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcc
Confidence            599999999999999999999999999999987 33443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.91  E-value=5.7e-11  Score=106.86  Aligned_cols=65  Identities=23%  Similarity=0.327  Sum_probs=48.3

Q ss_pred             CCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCccee
Q 042352           20 KPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~~   88 (445)
                      .|++|+...+.+--......+.    ..++||+|||||++||+||+.|+++ |++|+|+|+++.+||.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~----~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1           9 DPIKESIVSREMTRRYMTDMIT----YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHH----HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT
T ss_pred             ecchHHHHhHHHHHhhhccccc----ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCcee
Confidence            3566666554443322222221    2468999999999999999999985 999999999999999775

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.91  E-value=3e-08  Score=92.38  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .||||||||.+|+.+|+.|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            58999999999999999999999999999994

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.91  E-value=9.3e-09  Score=78.65  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEe-ccEEEEcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKS-EIGVILAV  300 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a-~~~VV~a~  300 (445)
                      |+++++|++|++|+..+++.+.|++.+|+++.+ | .||+|+
T Consensus        77 gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D-~Vi~AI  117 (117)
T d1onfa2          77 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFD-HVIYCV  117 (117)
T ss_dssp             TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEES-EEEECC
T ss_pred             CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCC-EEEEeC
Confidence            899999999999998877778899999988764 6 799884

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.88  E-value=5.9e-10  Score=96.36  Aligned_cols=42  Identities=29%  Similarity=0.465  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      +.|||+|||||++||+||.++++.|.+|+|+|+++.+||.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            469999999999999999999999999999999999998664

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.85  E-value=5.9e-10  Score=96.99  Aligned_cols=42  Identities=26%  Similarity=0.426  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+|||+|||||++||+||.+|++.|++|+|+|+...+||.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            469999999999999999999999999999999999998653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.84  E-value=8.2e-10  Score=103.44  Aligned_cols=42  Identities=36%  Similarity=0.589  Sum_probs=38.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH------CCCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHS------QGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~------~G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||||||||+|||+||+.|++      +|++|+||||+..+|....
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            46999999999999999999998      7999999999999987654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.83  E-value=1.3e-09  Score=96.67  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=35.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      |....||+|||||++||++|+.|+++|++|+|+||....+|
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            34567999999999999999999999999999999764444

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.82  E-value=3.2e-08  Score=77.56  Aligned_cols=37  Identities=30%  Similarity=0.493  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ...+++|||||+.|+-+|..|++.|.+|+|+|+++++
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            3578999999999999999999999999999987664

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=9e-10  Score=96.31  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=37.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-------CCEEEEecCCCCCccee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG-------RPFVLLEASDAVGGRVR   88 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G-------~~V~vlE~~~~~GG~~~   88 (445)
                      ++|+|||||+|||+||++|+++|       ++|+|+|+.+.+||..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            58999999999999999999987       58999999999999774

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=2.3e-09  Score=97.71  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||..++++  |.+|+|+||....||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            48999999999999999999986  77999999988877753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.77  E-value=2.8e-09  Score=99.18  Aligned_cols=50  Identities=14%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCC-----c--eEEeccEEEEcCChhHHhhhc
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANG-----E--TLKSEIGVILAVEEPEADKLL  309 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g-----~--~i~a~~~VV~a~~~~~~~~ll  309 (445)
                      +.+|++|+.|++|..+++++++|++.+.     .  ++.+++.||+|++.-.+.+||
T Consensus       205 nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LL  261 (360)
T d1kdga1         205 NFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL  261 (360)
T ss_dssp             TEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             ccccccCcEEEEEEEeCCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHH
Confidence            5799999999999999888889998642     2  356654699999987776654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.76  E-value=2.9e-09  Score=92.22  Aligned_cols=41  Identities=37%  Similarity=0.451  Sum_probs=37.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++|||+|||||++||+||.+|++.|++|+|+|+....|++.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccc
Confidence            57999999999999999999999999999999987766543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.73  E-value=4.8e-09  Score=88.56  Aligned_cols=41  Identities=27%  Similarity=0.481  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~   88 (445)
                      ..+|+|||||++||+||.+|+++|+ +|+|+||++.+||...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~   45 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST   45 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence            3689999999999999999999998 5999999999999654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.4e-09  Score=92.10  Aligned_cols=39  Identities=33%  Similarity=0.542  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +|||+|||||++|++||..|++.|++|+|+|++ .+||.|
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc   40 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTC   40 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeE
Confidence            589999999999999999999999999999994 688865

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=3.1e-09  Score=92.35  Aligned_cols=41  Identities=27%  Similarity=0.304  Sum_probs=37.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT   89 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s   89 (445)
                      ++|+|||||++||+||.+|+++  |++|+|||+.+.+||.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            4899999999999999999886  7899999999999997753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.70  E-value=1.5e-07  Score=72.16  Aligned_cols=37  Identities=24%  Similarity=0.519  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ...+++|||||+.|+-+|..|++.|.+|+++|+++++
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            4578999999999999999999999999999987653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.68  E-value=1.4e-07  Score=72.02  Aligned_cols=40  Identities=15%  Similarity=0.287  Sum_probs=36.1

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAV  300 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~  300 (445)
                      |+++++|++|++|+..+++.+.|++++|+++.|| .||+|+
T Consensus        78 GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D-~Vi~AI  117 (117)
T d1aoga2          78 GIQILTKENPAKVELNADGSKSVTFESGKKMDFD-LVMMAI  117 (117)
T ss_dssp             TCEEEESCCEEEEEECTTSCEEEEETTSCEEEES-EEEECS
T ss_pred             CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeC-EEEEeC
Confidence            8999999999999988776688999999999998 799884

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.67  E-value=1.9e-07  Score=71.33  Aligned_cols=41  Identities=12%  Similarity=0.135  Sum_probs=37.2

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVE  301 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~  301 (445)
                      |++|++|+.|++|+.++++...|.+.+|+++.+| .||+|++
T Consensus        76 GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D-~Vi~a~G  116 (117)
T d1feca2          76 GINVRTHENPAKVTKNADGTRHVVFESGAEADYD-VVMLAIG  116 (117)
T ss_dssp             TEEEEETCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSC
T ss_pred             cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcC-EEEEecC
Confidence            8999999999999988777778999999999998 7999975

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.65  E-value=1.6e-07  Score=71.76  Aligned_cols=35  Identities=26%  Similarity=0.522  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            57999999999999999999999999999997765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.64  E-value=2.1e-07  Score=71.63  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||||+.|+-+|..|++.|++|+++|+.+++
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            468999999999999999999999999999987553

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.63  E-value=3.1e-07  Score=70.21  Aligned_cols=34  Identities=35%  Similarity=0.496  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            5799999999999999999999999999998765

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.61  E-value=1.1e-07  Score=71.12  Aligned_cols=101  Identities=19%  Similarity=0.243  Sum_probs=76.9

Q ss_pred             CcceEEEEEeecCCCCCCCCCeEEe-cCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHH
Q 042352          320 ARSTVCLYFSADKDEIPVQEPVLFL-NGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVI  394 (445)
Q Consensus       320 ~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~  394 (445)
                      |.++..|+++|++..++....+.++ +......+.+++|.|.+.|.++|+|+.++++++++.    ...++++++++.++
T Consensus         2 Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a~   81 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAR   81 (108)
T ss_dssp             BCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHH
T ss_pred             CCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEEEEEEccccccccCCCCEEEEEEeCCCCCcccccCCHHHHHHHHH
Confidence            6788999999998776544444444 333334578999999999999999999999998764    34678999999999


Q ss_pred             HHHHhHhCCCcCCCceEeeEeecCCCCC
Q 042352          395 RELSDWFGKSTVGSWRHLRTYRVRFAQP  422 (445)
Q Consensus       395 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~  422 (445)
                      ++|+++++....+.+.  .+.|+..+.|
T Consensus        82 ~dL~~~lgi~~~P~~~--~v~rw~~aiP  107 (108)
T d2ivda2          82 EELKALAGVTARPSFT--RVFRWPLGIP  107 (108)
T ss_dssp             HHHHHHHCCCSCCSEE--EEEEESSCCB
T ss_pred             HHHHHHhCCCCCCcEE--EeeECCCCcC
Confidence            9999999876555554  4555555544

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.60  E-value=2.1e-08  Score=89.55  Aligned_cols=37  Identities=35%  Similarity=0.589  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCc
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGG   85 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG   85 (445)
                      .||+|||||++||++|+.|+++|. +|+|+||++.++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~   39 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   39 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            699999999999999999999995 8999999887754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.3e-08  Score=84.89  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=35.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .|||+|||||++||+||.++++.|++|+|+|++  +||++.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            389999999999999999999999999999974  677664

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.60  E-value=4e-08  Score=90.80  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=32.8

Q ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ++...||+||||||.+|+..|..|+++ ++|+|||+.+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cccCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            344569999999999999999999987 9999999964

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.60  E-value=1.2e-08  Score=87.85  Aligned_cols=39  Identities=31%  Similarity=0.560  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++||+|||||++||+||.++++.|.+|+|+|+. .+||.+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~   41 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcce
Confidence            489999999999999999999999999999994 457654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=1.2e-08  Score=88.68  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG   85 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG   85 (445)
                      +|||+|||||++||+||.++++.|++|+|+|+.+..|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            58999999999999999999999999999999776553

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.2e-08  Score=92.82  Aligned_cols=42  Identities=33%  Similarity=0.467  Sum_probs=38.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCccee
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~   88 (445)
                      ..+||+|||||++||+||++|+++  |++|+|+|+++.+||.+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW   92 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence            458999999999999999999975  999999999999999774

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.4e-07  Score=72.86  Aligned_cols=40  Identities=18%  Similarity=0.298  Sum_probs=35.9

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVE  301 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~  301 (445)
                      |+++++|+.|++|+.++++ +.|+++||+++.+| .||+|++
T Consensus        97 GV~~~~~~~V~~i~~~~~~-~~v~l~~G~~i~aD-~Vi~A~G  136 (137)
T d1m6ia2          97 GVKVMPNAIVQSVGVSSGK-LLIKLKDGRKVETD-HIVAAVG  136 (137)
T ss_dssp             TCEEECSCCEEEEEEETTE-EEEEETTSCEEEES-EEEECCC
T ss_pred             CcEEEeCCEEEEEEecCCE-EEEEECCCCEEECC-EEEEeec
Confidence            8999999999999987654 67999999999998 7999986

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.5e-08  Score=87.14  Aligned_cols=39  Identities=33%  Similarity=0.529  Sum_probs=35.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +||++|||||++|++||.++++.|++|+|+|+ +.+||.|
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            59999999999999999999999999999998 5566643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=3.6e-07  Score=70.12  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .+++|||||..|+-.|..|++.|.+|+|+|+++++
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            57999999999999999999999999999987664

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=1.5e-08  Score=87.28  Aligned_cols=39  Identities=38%  Similarity=0.657  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ++|++|||||++|++||..+++.|.+|+|+|++ .+||.|
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c   43 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTC   43 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence            589999999999999999999999999999985 577755

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.55  E-value=1.8e-08  Score=94.06  Aligned_cols=40  Identities=20%  Similarity=0.387  Sum_probs=35.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      |..+|||||||||++|+++|..|+++|++|+|||+....+
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   40 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence            4567999999999999999999999999999999965443

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.55  E-value=5.2e-07  Score=84.30  Aligned_cols=35  Identities=31%  Similarity=0.550  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~   81 (445)
                      +.||+||||||.+|+..|..|++++ ++|+|||+..
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            4599999999999999999999975 8999999964

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.55  E-value=2e-08  Score=88.81  Aligned_cols=38  Identities=37%  Similarity=0.574  Sum_probs=35.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      ||++|||||++|++||.++++.|++|+|+|+ +.+||.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc   39 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTC   39 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeE
Confidence            8999999999999999999999999999998 4578865

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.54  E-value=3.2e-08  Score=87.49  Aligned_cols=43  Identities=26%  Similarity=0.371  Sum_probs=40.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      .+.+||++|||||++|+.||..|++.|.+|+|+|+.+.+||.|
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            4467999999999999999999999999999999999999976

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.2e-08  Score=90.74  Aligned_cols=40  Identities=33%  Similarity=0.512  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +.+||+|||||++||+||..+++.| +|+||||.+..||.+
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            4699999999999999999998888 999999999888754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.52  E-value=3.4e-08  Score=91.36  Aligned_cols=59  Identities=20%  Similarity=0.143  Sum_probs=44.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-----HCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLH-----SQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL  120 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~-----~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl  120 (445)
                      +.|||+|||||++||++|..|+     ++|++|+||||++.+.-..+     +          ....+...++++++|+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r-----~----------~~l~~~~~~~L~~lGl   69 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQ-----A----------DGLQCRTLESLKNLGL   69 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCS-----C----------CEECHHHHHHHHTTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCe-----E----------EEECHHHHHHHHHcCC
Confidence            4599999999999999999997     46999999999876532110     0          0224566777777776

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=2.3e-08  Score=83.85  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      +..||+|||||++||+||.+|++.|.+|+|+|+....|
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g   41 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG   41 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccc
Confidence            34799999999999999999999999999999866544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.48  E-value=5.3e-07  Score=69.31  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .+++|||||..||-.|..|++.|.+|+|+|+++++
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            57999999999999999999999999999987653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=2.2e-08  Score=91.85  Aligned_cols=41  Identities=32%  Similarity=0.425  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~   87 (445)
                      +.+||+|||||++||+||..++++|.+|+|+||.+..||.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            46899999999999999999999999999999998887743

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.44  E-value=5.4e-08  Score=87.41  Aligned_cols=36  Identities=39%  Similarity=0.523  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      +.||+|||||++||++|..|++.|++|+||||++..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            369999999999999999999999999999998643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.37  E-value=1.3e-07  Score=82.03  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~   82 (445)
                      ++|||+|||||++||+||.++++.|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            56999999999999999999999875 7899998543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.36  E-value=1.6e-07  Score=86.87  Aligned_cols=40  Identities=23%  Similarity=0.377  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----CCCCEEEEecCCCCCcce
Q 042352           48 KDRVIVIGAGLAGLAAATRLHS----QGRPFVLLEASDAVGGRV   87 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~----~G~~V~vlE~~~~~GG~~   87 (445)
                      .+||+|||||++||+||+.|++    +|++|+|+||....||.+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence            4899999999999999999986    699999999988877643

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.33  E-value=1.1e-07  Score=82.71  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCc
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGG   85 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG   85 (445)
                      ++|||+|||||++|++||.++++.|. +|+|+|+....|+
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~   41 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGP   41 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCc
Confidence            57999999999999999999999885 6999998776443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.29  E-value=1.9e-07  Score=78.18  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+||+|||||++||+||.+|+|.|.+|+|+|+...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            47999999999999999999999999999997554

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.25  E-value=1.4e-06  Score=65.22  Aligned_cols=96  Identities=13%  Similarity=0.104  Sum_probs=71.2

Q ss_pred             CcceEEEEEeecCCCCCC-CCCeEEec-CCCC---cceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHH
Q 042352          320 ARSTVCLYFSADKDEIPV-QEPVLFLN-GSGK---GIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLT  390 (445)
Q Consensus       320 ~~~~~~v~~~~~~~~~~~-~~~~~~~~-~~~~---~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~  390 (445)
                      |.++..|.++|+++.++. ...+.++. ....   ..+.+++|.|.+.|.++|+|+.++++++++.    +.++++++++
T Consensus         2 Ya~va~V~l~~~~~~~~~~~~GfG~LVP~~e~~~g~~~lg~~f~S~~fp~r~p~~~~ll~~~~Gg~~~~~~~~~~d~~l~   81 (112)
T d1seza2           2 YVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELK   81 (112)
T ss_dssp             EEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHH
T ss_pred             CCcEEEEEEEEchHHcCCCCCceEEEeCCcccCCCceEEEEEEecccCCCcCCCCcEEEEEEECCCCCcccccCCHHHHH
Confidence            567888999998776432 12333343 3221   1377999999999999999999999988764    3567899999


Q ss_pred             HHHHHHHHhHhCCCcCCCceEeeEe
Q 042352          391 AEVIRELSDWFGKSTVGSWRHLRTY  415 (445)
Q Consensus       391 ~~~~~~l~~~~~~~~~~~~~~~~~~  415 (445)
                      +.++++|+++++....+.+.++.++
T Consensus        82 ~~a~~dl~~~lgi~~~P~~~~v~rw  106 (112)
T d1seza2          82 EIVTSDLKQLLGAEGEPTYVNHLYW  106 (112)
T ss_dssp             HHHHHHHHHHHCBCSCCSSEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCccEEEEEEC
Confidence            9999999999998666666544444

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.15  E-value=1.4e-07  Score=82.11  Aligned_cols=31  Identities=35%  Similarity=0.515  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|+|||||++||++|++|+++|++|+|+|+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            6999999999999999999999988777764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=1.1e-06  Score=75.87  Aligned_cols=38  Identities=26%  Similarity=0.575  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC---CCEEEEecCCCCCcce
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQG---RPFVLLEASDAVGGRV   87 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G---~~V~vlE~~~~~GG~~   87 (445)
                      .+|+|||||++|++||.++++.|   ++|+|+|+ ..+||.|
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~c   42 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAA   42 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCcee
Confidence            47999999999999999988764   67999998 5677754

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.94  E-value=4.8e-06  Score=77.67  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~   82 (445)
                      +.||+||||||.+|+..|..|++.| .+|+|||+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            3599999999999999999999998 79999999743

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.87  E-value=6.3e-06  Score=62.25  Aligned_cols=35  Identities=23%  Similarity=0.507  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .+++|||||+.|+-+|..|++.|++|+|+|+.+++
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            57999999999999999999999999999998765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=6.3e-06  Score=62.98  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||||++|+-+|..|++.|++|+|+|+++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            368999999999999999999999999999997654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.6e-05  Score=57.31  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+|+|||.|.+|+++|.+|.+.|.+|+++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            457999999999999999999999999999986553

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.6e-05  Score=60.84  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .+++|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            58999999999999999999999999999997764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.68  E-value=1.2e-05  Score=66.02  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~   82 (445)
                      ++|+|||||.+|+.+|..|.+.+.  +|+|+|+++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            589999999999999999999874  7999998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=6.1e-05  Score=57.21  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+++|||||..|+-.|..|++.|.+|+|++++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            479999999999999999999999999999753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.48  E-value=7.5e-05  Score=56.65  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      ..+++|||||..|+-.|..|++.|.+|+++|+.+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            368999999999999999999999999999987664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.47  E-value=4.9e-05  Score=57.95  Aligned_cols=36  Identities=25%  Similarity=0.501  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      .+++|||||..|+=.|..+++.|.+|+|+|+.+++.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            579999999999999999999999999999977654

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00026  Score=52.56  Aligned_cols=93  Identities=9%  Similarity=-0.065  Sum_probs=55.5

Q ss_pred             CcceEEEEEeecCCCCCCCCCeE-EecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHH
Q 042352          320 ARSTVCLYFSADKDEIPVQEPVL-FLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVI  394 (445)
Q Consensus       320 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~  394 (445)
                      +.+++|+++.|+++||+...... .......+........+  .   ...+..+|..+..++    +..++++++++.++
T Consensus         2 mG~~~Kv~l~f~~~FW~~~~~~g~~~~~~~~~~~~~~~~~~--~---~~~~~~vL~~~~~G~~a~~~~~ls~~e~~~~~l   76 (112)
T d2v5za2           2 LGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDT--K---PEGNYAAIMGFILAHKARKLARLTKEERLKKLC   76 (112)
T ss_dssp             BCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECC--C---TTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHH
T ss_pred             chheEEEEEEcCCCCCCCCCceeeEEecCCCCcEEEEccCc--C---ccCCCcEEEEEeCcHHHHHHHhCCHHHHHHHHH
Confidence            45689999999999975433221 12222222222221111  1   122345666666554    57899999999999


Q ss_pred             HHHHhHhCCCcCCCceEeeEeec
Q 042352          395 RELSDWFGKSTVGSWRHLRTYRV  417 (445)
Q Consensus       395 ~~l~~~~~~~~~~~~~~~~~~~~  417 (445)
                      +.|+++||+..+.......+.++
T Consensus        77 ~~L~~~~g~~~~~~~~~~~~~~W   99 (112)
T d2v5za2          77 ELYAKVLGSLEALEPVHYEEKNW   99 (112)
T ss_dssp             HHHHHHHTCGGGGCCSEEEEEEG
T ss_pred             HHHHHHhCccccCCccEEEEccc
Confidence            99999999755443434444444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.39  E-value=5.3e-05  Score=61.85  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...|+|||||..|..+|.+|+++|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            35799999999999999999999999999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.37  E-value=7.6e-05  Score=61.10  Aligned_cols=36  Identities=33%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .-||+|||||.+|+-+|..|++.|.+|+|++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            358999999999999999999999999999876553

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.28  E-value=9.3e-05  Score=61.49  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAV   83 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~   83 (445)
                      +|+|||||.+|+.+|..|++.  +.+|+++|+++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            699999999999999999997  4589999987654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.25  E-value=8.7e-05  Score=59.71  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            69999999999999999965 789999998654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.24  E-value=0.00013  Score=59.74  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..|+|||||..|++.|..|+++|++|+++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999999853

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.16  E-value=9.7e-05  Score=60.48  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=34.3

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP  303 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~  303 (445)
                      +++++++++|++|..+.   ..+++.+|+++.+| .||+|++..
T Consensus        69 ~i~~~~~~~v~~i~~~~---~~~~~~~g~~~~~D-~vi~a~G~~  108 (183)
T d1d7ya1          69 EVEWLLGVTAQSFDPQA---HTVALSDGRTLPYG-TLVLATGAA  108 (183)
T ss_dssp             TCEEEETCCEEEEETTT---TEEEETTSCEEECS-EEEECCCEE
T ss_pred             CeEEEEecccccccccc---ceeEecCCcEeeee-eEEEEEEEE
Confidence            67999999999998765   46888999999998 799999864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00016  Score=60.77  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCCh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEE  302 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~  302 (445)
                      |++++++++|++|+.++   ..|++.||+++.+| .||+|++.
T Consensus        97 gI~~~~g~~V~~id~~~---~~V~l~dG~~i~~d-~lViAtG~  135 (213)
T d1m6ia1          97 GVAVLTGKKVVQLDVRD---NMVKLNDGSQITYE-KCLIATGG  135 (213)
T ss_dssp             EEEEEETCCEEEEEGGG---TEEEETTSCEEEEE-EEEECCCE
T ss_pred             CeEEEeCCEEEEeeccC---ceeeeccceeeccc-eEEEeeee
Confidence            89999999999997765   46899999999998 69999885

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00081  Score=49.40  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=53.8

Q ss_pred             cceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHH
Q 042352          321 RSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRE  396 (445)
Q Consensus       321 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~  396 (445)
                      ....|+++.|+++||+.....+........... .....     ....+..+|..+..++    +..++++++++.++++
T Consensus         3 G~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~   76 (109)
T d2dw4a3           3 GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG-ELFLF-----WNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAI   76 (109)
T ss_dssp             CCCEEEEEECSSCCSCTTCSEEEECCSSSTTTT-TTCEE-----ECC--CCEEEEEECHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ChhEEEEEEECCCCCCCCCCEeEEEecCCCCce-EEeec-----cCCCCCCEEEEEECcHHHHHHHhcCHHHHHHHHHHH
Confidence            356899999999997655444333222111110 00011     1123456777666554    5678999999999999


Q ss_pred             HHhHhCCCcCCCceEeeEee
Q 042352          397 LSDWFGKSTVGSWRHLRTYR  416 (445)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~  416 (445)
                      |+++||...........+.+
T Consensus        77 L~~~~~~~~~~~~~~~~~~~   96 (109)
T d2dw4a3          77 LKGIFGSSAVPQPKETVVSR   96 (109)
T ss_dssp             HHHHHCTTTCCCCSEEEECC
T ss_pred             HHHHhCccccCcccEEEEec
Confidence            99999976544444333333

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00042  Score=55.46  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=32.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      +|+|||+|..|...|..|++.|++|++++|.....
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            69999999999999999999999999999977643

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.04  E-value=0.00032  Score=52.22  Aligned_cols=80  Identities=11%  Similarity=0.005  Sum_probs=52.1

Q ss_pred             CCcceEEEEEeecCCCCCCCCCe--EEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecC----CCCCCCChHHHHH
Q 042352          319 PARSTVCLYFSADKDEIPVQEPV--LFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG----LFADVMDDNLTAE  392 (445)
Q Consensus       319 ~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~----~~~~~~~~e~~~~  392 (445)
                      ++.+++|+++.|+++||+.....  ....+   .....+.+++..    .+.+..+|..+..+    .+..++++++++.
T Consensus         1 hy~~~~Kv~l~f~~~FW~~~g~~~~~~~td---~~~~~~~~~~~~----~~~~~~vL~~~~~g~~a~~~~~l~~e~~~~~   73 (113)
T d2iida2           1 HYRSGTKIFLTCTTKFWEDDGIHGGKSTTD---LPSRFIYYPNHN----FTNGVGVIIAYGIGDDANFFQALDFKDCADI   73 (113)
T ss_dssp             CEECEEEEEEEESSCGGGGGTCCSSEEEES---STTCEEECCSSC----CTTSCEEEEEEEEHHHHHTTTTSCHHHHHHH
T ss_pred             CCccEEEEEEEcCCCCCCCcCCEeeEEEeC---CCceEEEeCCCC----CCCCceEEEEEeCCchhHHHHcCCHHHHHHH
Confidence            35678999999999997532211  11122   223334444432    23455677666544    3678899999999


Q ss_pred             HHHHHHhHhCCCc
Q 042352          393 VIRELSDWFGKST  405 (445)
Q Consensus       393 ~~~~l~~~~~~~~  405 (445)
                      ++++|+++||...
T Consensus        74 ~l~~L~~~~~~~~   86 (113)
T d2iida2          74 VFNDLSLIHQLPK   86 (113)
T ss_dssp             HHHHHHHHHTCCH
T ss_pred             HHHHHHHHcCCcc
Confidence            9999999999753

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.97  E-value=0.00062  Score=50.40  Aligned_cols=90  Identities=13%  Similarity=0.164  Sum_probs=54.9

Q ss_pred             ceEEEEEeecCCCCCCCCC--eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHH
Q 042352          322 STVCLYFSADKDEIPVQEP--VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIR  395 (445)
Q Consensus       322 ~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~  395 (445)
                      ...||++.|+++||+....  .+.......+.+.  .+.+...   .+.+..+|.+++.++    +..++++++++.+++
T Consensus         4 ~~~Ki~l~F~~~FW~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~   78 (112)
T d1b5qa2           4 VYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYG--VWQEFEK---QYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQ   78 (112)
T ss_dssp             CEEEEEEECSSCCSCCSTTCSEEEEECSSTTSSC--EEEECTT---TSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred             cEEEEEEEECCCCCCCCCCEEEEEeecCCCCeeE--EEEEccc---CCCCCCEEEEEeCcHHHHHHHhCCHHHHHHHHHH
Confidence            4689999999999764432  1222222222221  1112111   123556777766554    567899999999999


Q ss_pred             HHHhHhCCCcCCCceEeeEee
Q 042352          396 ELSDWFGKSTVGSWRHLRTYR  416 (445)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~~~~  416 (445)
                      .|+++||+..........+.+
T Consensus        79 ~L~~~~~~~~~~~~~~~~~t~   99 (112)
T d1b5qa2          79 VLRKMFPGKDVPDATDILVPR   99 (112)
T ss_dssp             HHHHHCTTSCCCCCSEEECCC
T ss_pred             HHHHHhCcccccCCCEEEecc
Confidence            999999976554444333333

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00039  Score=57.18  Aligned_cols=34  Identities=32%  Similarity=0.535  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      -.+|+|||||..|...|+.++++|++|+++|+++
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            4689999999999999999999999999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.83  E-value=0.00051  Score=56.12  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      -.+|+|||||..|...|..++.+|++|+++|.++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4579999999999999999999999999999863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.81  E-value=0.00068  Score=53.45  Aligned_cols=34  Identities=21%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +..+|+|||+|.+|+.||..+.+.|.+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            4578999999999999999999999999999974

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.70  E-value=0.00098  Score=52.66  Aligned_cols=37  Identities=14%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             CCcEEEE--CCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVI--GAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviII--GaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ...++||  |||..|+.+|-.|++.|++|+|+|+.++++
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            3455665  999999999999999999999999987765

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.70  E-value=0.00041  Score=56.87  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ++.+.+|+|||||--|.+.|..|+++|++|+++.++
T Consensus         4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           4 LLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             cceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            455568999999999999999999999999999875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.66  E-value=0.00097  Score=53.33  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+|+|||||.+|+.||......|.+|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            5689999999999999999999999999999753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.43  E-value=0.0011  Score=55.01  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||.|.-||..|..|+++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            59999999999999999999999999999763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.30  E-value=0.002  Score=49.16  Aligned_cols=33  Identities=27%  Similarity=0.526  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|+|+|+|-.|...|..|.++|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            699999999999999999999999999998653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.30  E-value=0.0021  Score=50.41  Aligned_cols=39  Identities=21%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             ccCCCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           43 SKLERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        43 ~~~~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      +.+.++.+|+|||+|--|.+.|+.|+..+. +++++|.+.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            345567899999999999999999999886 799998654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.26  E-value=0.0018  Score=50.24  Aligned_cols=37  Identities=24%  Similarity=0.531  Sum_probs=32.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      |+++.+|+|||+|--|.+.|+.|+.+|.  ++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4566799999999999999999999984  799999754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.19  E-value=0.0024  Score=48.84  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ++++|||+|-.|...|..|.+.|++|+++|.+..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            3689999999999999999999999999998643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.06  E-value=0.0038  Score=48.82  Aligned_cols=35  Identities=26%  Similarity=0.496  Sum_probs=31.6

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +..+|+||| .|..|.+-|..|.++|++|++++++.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            346899999 79999999999999999999999854

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.98  E-value=0.004  Score=48.72  Aligned_cols=34  Identities=29%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~   81 (445)
                      ..+|+|||||-+|+=+|..|.+.|.+ |+++++.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            35799999999999999999999875 88887643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.98  E-value=0.0032  Score=50.01  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||+|..|.+-|..|+++|++|+++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            59999999999999999999999999999863

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0066  Score=47.59  Aligned_cols=40  Identities=23%  Similarity=0.407  Sum_probs=33.0

Q ss_pred             ccccCCCCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      .+...+.+.+|+|||+|--|-++|+.|..+|.  ++.++|.+
T Consensus        12 ~~~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          12 VPEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             SSCCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             cccccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            33334455689999999999999999999986  79999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.66  E-value=0.0041  Score=50.22  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEA   79 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~   79 (445)
                      +|+|||||.-|.+.|..|+++|++|+++.|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            699999999999999999999999999854

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0048  Score=48.14  Aligned_cols=32  Identities=28%  Similarity=0.586  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEe
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLE   78 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE   78 (445)
                      +..+|+|||||..|+.-|..|.+.|.+|+|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            45789999999999999999999999999994

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.17  E-value=0.0097  Score=43.26  Aligned_cols=35  Identities=11%  Similarity=0.141  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ...+|+|||+|.||+=.|..|++.+.+|+++-+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            45799999999999999999999988887776543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.14  E-value=0.0097  Score=43.75  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA   79 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~   79 (445)
                      ...|+|||+|-.|..-|..|.+.|.+|+|+..
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            46899999999999999999999999999864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.02  E-value=0.012  Score=45.68  Aligned_cols=34  Identities=41%  Similarity=0.615  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      ...+|.|||||-.|.++|+.|+.+|.  ++.++|.+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            45689999999999999999999886  69999865

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.91  E-value=0.019  Score=44.84  Aligned_cols=33  Identities=21%  Similarity=0.501  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +.+|+|||+|--|-++|+.|..+|.  ++.++|.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4699999999999999999999987  79999975

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.011  Score=47.98  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=29.4

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVI-GAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviII-GaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|+|| |+|-.|.+.|..|+++|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999 779999999999999999999998863

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.82  E-value=0.012  Score=46.44  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .+|.|||-|..|..-|..|.++|++|.+++++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            46999999999999999999999999999975

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.74  E-value=0.017  Score=46.16  Aligned_cols=33  Identities=12%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|.|||-|..|..-|..|.++|++|.+++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            579999999999999999999999999999864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.66  E-value=0.014  Score=44.98  Aligned_cols=32  Identities=34%  Similarity=0.574  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      .+|+|||+|--|.++|+.|..+|.  +++++|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            579999999999999999999875  78888864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.65  E-value=0.019  Score=44.01  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      .+|.|||+|-.|.+.|+.|..++.  ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            479999999999999999999986  799999654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.017  Score=45.84  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +..+|+|+|||=++-++++.|.+.|.+|+|+.|+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            3468999999999999999999999999999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.57  E-value=0.016  Score=44.48  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .+|.|||+|--|.++|+.|+.++. ++.++|.+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            479999999999999999999876 899998643

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.56  E-value=0.011  Score=44.30  Aligned_cols=51  Identities=20%  Similarity=0.380  Sum_probs=36.2

Q ss_pred             cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeC--CC--ceEEeccEEEEcCC
Q 042352          249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLA--NG--ETLKSEIGVILAVE  301 (445)
Q Consensus       249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~--~g--~~i~a~~~VV~a~~  301 (445)
                      .+.+.+.+.++  |+++++|++|++++.++++ +.|++.  +|  +++++| .|++|++
T Consensus        68 ~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g-~~v~~~~~~g~~~~i~~D-~vl~A~G  124 (125)
T d1ojta2          68 DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG-VYVTFEGANAPKEPQRYD-AVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHGGGEEEEECSCEEEEEEEETTE-EEEEEESSSCCSSCEEES-CEEECCC
T ss_pred             hHHHHHHHHHHHcCcccccCcEEEEEEEcCCc-EEEEEEeCCCCeEEEEcC-EEEEecC
Confidence            34444444443  9999999999999988766 445554  33  369998 6999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.02  Score=45.46  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .-.|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3469999999999999999999998 699998753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.42  E-value=0.016  Score=45.54  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|.|||-|..|...|..|+++|++|.+++++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            59999999999999999999999999999853

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.42  E-value=0.013  Score=47.72  Aligned_cols=32  Identities=19%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|+|||.|.-||..|..|+ +|++|+.+|-+..
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            5999999999999998886 5999999997643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.37  E-value=0.027  Score=41.72  Aligned_cols=41  Identities=17%  Similarity=0.130  Sum_probs=31.0

Q ss_pred             CCcEEeCceeeEEEecCCCcC-eEE---eCCCceEEeccEEEEcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMP-NVR---LANGETLKSEIGVILAVE  301 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~-~V~---~~~g~~i~a~~~VV~a~~  301 (445)
                      |+++++|++|++|+.++++.+ .+.   ..+++++.+| .||+|++
T Consensus        77 gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D-~Vi~a~G  121 (121)
T d1mo9a2          77 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETD-FVFLGLG  121 (121)
T ss_dssp             TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECS-CEEECCC
T ss_pred             ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcC-EEEEEEC
Confidence            899999999999998876533 222   2345679998 6999874

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.35  E-value=0.023  Score=45.45  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|.|||-|..|..-|..|.++|++|.+++++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            6999999999999999999999999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.34  E-value=0.021  Score=45.20  Aligned_cols=34  Identities=32%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .-.|+|+|+|..|+.++..+...|.+|.++|+++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3479999999999999999988999999999763

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.23  E-value=0.026  Score=43.27  Aligned_cols=32  Identities=31%  Similarity=0.429  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      .+|+|||+|.-|.++|+.|..+|.  ++.++|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            469999999999999999999987  79999865

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.22  E-value=0.025  Score=43.36  Aligned_cols=32  Identities=38%  Similarity=0.583  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      +|+|||||--|.+.|+.|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            69999999999999999999974  899999765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.18  E-value=0.028  Score=44.37  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ...+|+|||+|=++-++++.|.+.|. +|+|+.|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            45689999999999999999999996 89999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.026  Score=42.19  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +..+|+|||+|-+.+-.|..|++-..+|+++-|.+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            457999999999999999999999999999987654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.92  E-value=0.03  Score=44.31  Aligned_cols=31  Identities=23%  Similarity=0.391  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +|.|||.|..|.+-|..|.+.|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            69999999999999999999986  57778875

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.029  Score=41.91  Aligned_cols=37  Identities=35%  Similarity=0.402  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      -...+|+|||+|-+.+-.|.+|++-..+|+++-+.+.
T Consensus        28 ~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          28 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             cCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            3568999999999999999999999899999987654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.68  E-value=0.028  Score=43.02  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +|+|||+|--|-+.|+.|+.+|.  ++.++|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            69999999999999999999875  69999865

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.66  E-value=0.039  Score=42.58  Aligned_cols=33  Identities=21%  Similarity=0.456  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .+|.|||+|--|-+.|+.|...+. ++.++|.+.
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            589999999999999999998875 788998643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.64  E-value=0.027  Score=43.20  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352           50 RVIVIGA-GLAGLAAATRLHSQGR--PFVLLEASD   81 (445)
Q Consensus        50 dviIIGa-G~~GLsaA~~L~~~G~--~V~vlE~~~   81 (445)
                      +|+|||| |.-|.++|+.|+.+|.  +++++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6999996 9999999999999986  689998753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.036  Score=45.26  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           46 ERKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        46 ~~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      |.+.+|+|+|| |..|-..+..|.++|++|+++.|+.
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            34578999995 9999999999999999999998753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.58  E-value=0.045  Score=42.98  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..-.|+|+|+|..|+.++..+...|.+|.+++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            3457999999999999999998899999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=0.041  Score=43.37  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..-.|+|+|+|..|+.++..+...|.+|.+++.++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            445799999999999999888888999999998654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.53  E-value=0.032  Score=39.37  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             CCCCCcEEEECCCHHHHHH-HHHHHHCCCCEEEEecC
Q 042352           45 LERKDRVIVIGAGLAGLAA-ATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsa-A~~L~~~G~~V~vlE~~   80 (445)
                      +.+..++-+||-|=+|+++ |..|.++|++|+-.|..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4556889999999999999 99999999999998864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.53  E-value=0.03  Score=42.95  Aligned_cols=31  Identities=35%  Similarity=0.463  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           50 RVIVIGA-GLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        50 dviIIGa-G~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +|.|||| |..|.++|+.|+.+|.  ++.++|.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            6999996 9999999999999985  89999875

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.027  Score=44.08  Aligned_cols=30  Identities=27%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEE
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFV   75 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~   75 (445)
                      ....+|+|||||..|+-+|..|++.|.+++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCccc
Confidence            345799999999999999999999997543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.39  E-value=0.0019  Score=54.69  Aligned_cols=37  Identities=8%  Similarity=0.197  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ..+++|||||.+|+-+|..|++.|.+|+++++.+.++
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            4679999999999999999999999999999988765

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.34  E-value=0.04  Score=41.38  Aligned_cols=39  Identities=26%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV   83 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~   83 (445)
                      .-+..+|+|||+|-+.+-.|.+|++--.+|+++-|.+.+
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            345689999999999999999999999999999887664

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.038  Score=42.12  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~   80 (445)
                      +|.|||||--|.++|+.|+.++.  ++.++|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            69999999999999999999875  79999865

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.046  Score=44.97  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~   82 (445)
                      ..++++|||||++|+.+|..|.+.|+  +|+++++.+.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            45789999999999999999998876  5999987654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.87  E-value=0.015  Score=42.86  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=31.0

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCC--ceEEeccEEEEcCC
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANG--ETLKSEIGVILAVE  301 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g--~~i~a~~~VV~a~~  301 (445)
                      +.+.+.+.++  |+++++|++|++|+.   +...+...+|  +++.+| .||+|++
T Consensus        64 ~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~~~~~~~~~~~i~~D-~vi~A~G  115 (115)
T d1lvla2          64 LTAPVAESLKKLGIALHLGHSVEGYEN---GCLLANDGKGGQLRLEAD-RVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHTCEEETTCEEEEEET---TEEEEECSSSCCCEECCS-CEEECCC
T ss_pred             hHHHHHHHHHhhcceEEcCcEEEEEcC---CeEEEEEcCCCeEEEEcC-EEEEecC
Confidence            3344444333  999999999999962   2233333333  468998 6999875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.86  E-value=0.049  Score=42.11  Aligned_cols=33  Identities=33%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +|.|||.|..|.+.|..|.++|++|+++++...
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            699999999999999999999999999876543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.068  Score=41.28  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +++|+|.|-.|...|..|.++|.+|+|+|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            69999999999999999999999999999764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.81  E-value=0.048  Score=43.62  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .-.|+|+|||..|+.++..+...|. +|.++|.++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccc
Confidence            4579999999999999999999997 799998754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.082  Score=41.52  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ....-.|+|+|+|..|+.++..+...|.++++++.++
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            3345679999999999999999888999999998653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.21  E-value=0.1  Score=41.30  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..-.|+|+|+|..|++++..++..|. +|.++|.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            34579999999999999999998997 79999875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.81  E-value=0.066  Score=41.37  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +|.|||+|-.|.+-|..|.++|++|+|.+++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            6999999999999999999999999999875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.79  E-value=0.066  Score=42.30  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +...|+|+|||-++-++++.|.+.+.+|+|+-|+
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            4568999999999999999999988899999876

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.70  E-value=0.14  Score=37.15  Aligned_cols=35  Identities=17%  Similarity=0.494  Sum_probs=30.9

Q ss_pred             CCcEEEECCC-----------HHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGAG-----------LAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGaG-----------~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|||+|           .++..|+..|++.|+++.++--|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            4679999999           5899999999999999999987654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.12  Score=38.05  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGL-----------AGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~-----------~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+|+|||+|+           ++..|+..|++.|+++.++.-|+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            457899999995           799999999999999999987655

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.36  E-value=0.12  Score=41.13  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~   83 (445)
                      +..+|+|||+|-+|-++++.|.+.|. +++|+.|+...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            34689999999999999999999987 68999887553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.34  E-value=0.11  Score=42.03  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=29.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           45 LERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....-.|+|+|+|..|+.++..++..|. +|.+.|.+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            3344589999999999999999888876 68888764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.15  Score=36.78  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ...+|.|||||-=|-..|....+.|++|.++|.++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            456899999999999999999999999999997644

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.26  E-value=0.092  Score=41.62  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~   82 (445)
                      --|+|+|+|..||.++..++..|. +|.++|.++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            459999999999999999999985 7999997543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.13  E-value=0.13  Score=40.53  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..-.|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            34579999999999999999999998 577777654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.00  E-value=0.13  Score=40.01  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ....|+|||+|-.|-.+|..|.+.|. +++|.-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            56789999999999999999999998 58898765

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.71  E-value=0.078  Score=43.91  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      ..++|+|||+|-+|.=+|+.|++.+.+++++=+.
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4589999999999999999999999988887554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.68  E-value=0.12  Score=39.20  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=26.8

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCC--CEEEEec
Q 042352           50 RVIVIG-AGLAGLAAATRLHSQGR--PFVLLEA   79 (445)
Q Consensus        50 dviIIG-aG~~GLsaA~~L~~~G~--~V~vlE~   79 (445)
                      +|.||| +|-.|-++|+.|..+|.  ++.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            699999 69999999999999986  6888884

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.68  E-value=0.13  Score=44.05  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=31.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +.+|+|+|| |..|-..+..|.++|++|.++.|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            568999998 99999999999999999999998643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.56  E-value=0.13  Score=44.34  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=31.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ++.+|+|+|| |..|...+..|.++|++|+++-|+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            3457999997 99999999999999999999987543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.51  E-value=0.099  Score=41.47  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +..+|+|||||-++-++++.|.+.| +|+|+-|+
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            3468999999999999999998777 89999774

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.43  E-value=0.14  Score=39.92  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      .-.|+|+|+|..|+.++..+...|.+|.+++.+
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            356999999999999999999999999998864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.38  E-value=0.098  Score=38.60  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=28.5

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCCh
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEE  302 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~  302 (445)
                      |+++++|++|++++.+     ++. .+++++.+| .||+|++.
T Consensus        86 GV~~~~~~~v~~~~~~-----~v~-~~~~~i~~D-~vi~a~Gv  121 (122)
T d1xhca2          86 GVKFFLNSELLEANEE-----GVL-TNSGFIEGK-VKICAIGI  121 (122)
T ss_dssp             TEEEECSCCEEEECSS-----EEE-ETTEEEECS-CEEEECCE
T ss_pred             CcEEEeCCEEEEEeCC-----EEE-eCCCEEECC-EEEEEEEe
Confidence            9999999999998643     243 466789998 69999863

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.19  Score=37.11  Aligned_cols=40  Identities=13%  Similarity=0.088  Sum_probs=29.0

Q ss_pred             CCcEEeCceeeEEEecCCCcCeEE---eCCCc------eEEeccEEEEcCC
Q 042352          260 FESILLNTRVLSIDFDEQNMPNVR---LANGE------TLKSEIGVILAVE  301 (445)
Q Consensus       260 g~~i~~n~~V~~I~~~~~~~~~V~---~~~g~------~i~a~~~VV~a~~  301 (445)
                      |++|++|++|++|+.++++ +.+.   ...|+      .+.+| .||+|++
T Consensus        77 Gv~i~~~~~v~~i~~~~~g-~~v~~~~~~~g~~~~~~~~~~~D-~vl~a~G  125 (125)
T d3grsa2          77 GVEVLKFSQVKEVKKTLSG-LEVSMVTAVPGRLPVMTMIPDVD-CLLWAIG  125 (125)
T ss_dssp             TCEEETTEEEEEEEEETTE-EEEEEEECCTTSCCEEEEEEEES-EEEECSC
T ss_pred             CCEEEeCCEEEEEEEcCCe-EEEEEEEccCCcCcCccccccCC-EEEEEeC
Confidence            9999999999999988765 2222   23442      36687 6999874

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.92  E-value=0.13  Score=39.45  Aligned_cols=31  Identities=26%  Similarity=0.312  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CCEEEEecC
Q 042352           50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEAS   80 (445)
Q Consensus        50 dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~   80 (445)
                      +|.+||+|-.|-+-|..|.++| ++|.+++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            6999999999999999888876 899999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.56  E-value=0.2  Score=40.17  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+.|+|.| +|-.|..+|..|+++|.+|+++.|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            457889999 69999999999999999999998863

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.00  E-value=0.17  Score=37.21  Aligned_cols=51  Identities=20%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             HHHHHHhcCC--CCcEEeCceeeEEEecCCC---cCeEEeCCC---c--eEEeccEEEEcCC
Q 042352          250 IPNQIASKLP--FESILLNTRVLSIDFDEQN---MPNVRLANG---E--TLKSEIGVILAVE  301 (445)
Q Consensus       250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~---~~~V~~~~g---~--~i~a~~~VV~a~~  301 (445)
                      +.+.+.+.++  |++|++|+.|++++..+++   .+.++..++   +  ...+| .|++|++
T Consensus        62 ~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D-~vl~AiG  122 (122)
T d1h6va2          62 MANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFN-TVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEES-EEECCCC
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECC-EEEEEeC
Confidence            4444444443  9999999999999765432   244554432   2  24577 6998874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.49  E-value=0.25  Score=38.80  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEE-EEecC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFV-LLEAS   80 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~-vlE~~   80 (445)
                      ..-+|+|+|+|..|++++..+...|.+++ +.+.+
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            34579999999999999999988888654 55543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=0.18  Score=42.29  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4689999999999999999999998 78999853

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.29  Score=37.80  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      ..+.++|||-|..|-.+|..|+..|.+|+|.|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            45789999999999999999999999999999854

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.72  E-value=0.27  Score=37.36  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=26.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHH-CC--CCEEEEecCC
Q 042352           50 RVIVIG-AGLAGLAAATRLHS-QG--RPFVLLEASD   81 (445)
Q Consensus        50 dviIIG-aG~~GLsaA~~L~~-~G--~~V~vlE~~~   81 (445)
                      +|.||| ||--|-+.|+.|+. .+  .++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            699999 59999999998864 33  5899999754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.50  E-value=0.29  Score=38.46  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..-.|+|+|+|..|++++..++..|. +|.+.|.++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            34469999999999999999999986 688887653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.21  E-value=0.41  Score=41.08  Aligned_cols=33  Identities=21%  Similarity=0.192  Sum_probs=26.8

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +-++|-| +|=.|.++|..|+++|++|++.+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3345555 67789999999999999999999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.00  E-value=0.29  Score=38.45  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..--|+|+|+|-.|++++..++..|. +|.+.+.++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            33459999999999999999999975 788887653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.57  E-value=0.42  Score=37.32  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=28.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      ..-.|+|+|+|..|++++..+++.|. +|.+++.++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            34458999999999999999999876 688887654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.01  E-value=0.43  Score=42.20  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           47 RKDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        47 ~~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +..+|+|.| +|..|...+..|.++|++|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            345799998 79999999999999999999998643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.92  E-value=0.34  Score=37.90  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .-.|+|+|+|..|+.++..++..|. +|++.+.++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            4569999999999999999988875 667777754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=85.54  E-value=0.37  Score=37.03  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+.++|+|=|.-|-.+|..|+..|.+|+|.|..+.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            457899999999999999999999999999998653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.46  E-value=0.6  Score=36.59  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      .+|+|||||.+|+.+|..|++.|.+|+|++..+.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            4599999999999999999999998888876544

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.40  E-value=0.57  Score=32.02  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHH-HHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAA-ATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsa-A~~L~~~G~~V~vlE~~   80 (445)
                      .+|=+||-|=+|+++ |..|.++|++|+--|+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~   34 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIE   34 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            357788888888876 88889999999999875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.12  E-value=0.48  Score=38.53  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352           46 ERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS   80 (445)
Q Consensus        46 ~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~   80 (445)
                      ..+.+|+|.|||-+|+..|..|.+.+. ++.++|+.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            356789999999999999999999876 68888876

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=84.30  E-value=0.68  Score=40.62  Aligned_cols=34  Identities=24%  Similarity=0.274  Sum_probs=30.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352           47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +++.|+|+|| |..|-..+..|.++|++|.++=|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            4578999996 999999999999999999999775

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.18  E-value=0.15  Score=37.82  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCE-EEEecCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPF-VLLEASDAV   83 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V-~vlE~~~~~   83 (445)
                      ++++|+|+|||-+|-+.+.++.+. |+++ ..+|-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            356899999999999888776543 6664 556655443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.80  E-value=0.3  Score=41.28  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      .+|+|.|| |..|-..+.+|.++|++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            35999998 9999999999999999999998754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.20  E-value=0.54  Score=38.56  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=21.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC
Q 042352           48 KDRVIVIGAGLAGLAAATRLHSQ   70 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~~   70 (445)
                      ..+|+|||+|-.+|=||..|.+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSC
T ss_pred             CceEEEECCchhHHHHHHHHhcC
Confidence            57899999999999999999983

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.81  E-value=0.65  Score=38.68  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=25.1

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352           51 VIVIGA-GLAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        51 viIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      |+|.|| +=.|+++|..|+++|++|.+.++++
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            345564 5578999999999999999999864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.66  E-value=0.34  Score=37.19  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC
Q 042352           48 KDRVIVIGA-GLAGLAAATRLHSQGR   72 (445)
Q Consensus        48 ~~dviIIGa-G~~GLsaA~~L~~~G~   72 (445)
                      ..+|.|||| |..|-+.|+.|+..+.
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            348999997 9999999999998743

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.40  E-value=0.72  Score=35.70  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352           48 KDRVIVIGA-GLAGLAAATRLHSQGR-PFVLLEASD   81 (445)
Q Consensus        48 ~~dviIIGa-G~~GLsaA~~L~~~G~-~V~vlE~~~   81 (445)
                      .-.|+|+|+ |..|+.++..+...|. +|.+.+.++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            356999995 9999999999988884 888888753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.06  E-value=0.97  Score=35.51  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352           47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG   84 (445)
Q Consensus        47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G   84 (445)
                      ....|.|||.|..|-..|..|..-|.+|.++++...-+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~   78 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG   78 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccccc
Confidence            45679999999999999999999999999999875543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.55  E-value=0.59  Score=30.98  Aligned_cols=32  Identities=19%  Similarity=0.176  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352           49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +.|.|||+|==|-.-+....+-|++|.+++-.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~   33 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLD   33 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            36899999999999999999999999999864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.29  E-value=0.79  Score=40.12  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           48 KDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        48 ~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      ..+|+|.| +|..|...+..|.++|++|.++++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            36899999 789999999999999999999998543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=81.26  E-value=0.75  Score=38.58  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             CCCCCcEEEECC-CH--HHHHHHHHHHHCCCCEEEEecC
Q 042352           45 LERKDRVIVIGA-GL--AGLAAATRLHSQGRPFVLLEAS   80 (445)
Q Consensus        45 ~~~~~dviIIGa-G~--~GLsaA~~L~~~G~~V~vlE~~   80 (445)
                      +.+.+.++|.|| |-  .|.++|..|+++|++|.+..++
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            345677899995 44  6889999999999999998764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.07  E-value=0.76  Score=37.30  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH
Q 042352           48 KDRVIVIGAGLAGLAAATRLHS   69 (445)
Q Consensus        48 ~~dviIIGaG~~GLsaA~~L~~   69 (445)
                      ..+|+|||+|-.+|=||..|++
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~   60 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLT   60 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHS
T ss_pred             CceEEEECCCchhHhhhhhhcc
Confidence            4689999999999999998873

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=80.85  E-value=0.9  Score=38.24  Aligned_cols=36  Identities=11%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCCcEEEECC-C--HHHHHHHHHHHHCCCCEEEEecCCC
Q 042352           47 RKDRVIVIGA-G--LAGLAAATRLHSQGRPFVLLEASDA   82 (445)
Q Consensus        47 ~~~dviIIGa-G--~~GLsaA~~L~~~G~~V~vlE~~~~   82 (445)
                      +.+.++|.|| |  =.|.++|..|+++|++|++.++++.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4567889986 3  3799999999999999999998754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.48  E-value=1.1  Score=36.85  Aligned_cols=41  Identities=24%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352           48 KDRVIVIGAG-LAGLAAATRLHSQGRPFVLLEASDAVGGRVR   88 (445)
Q Consensus        48 ~~dviIIGaG-~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~   88 (445)
                      .+-++|-||+ =.|.++|..|+++|++|.+.+++...+..+.
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   48 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF   48 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCce
Confidence            3456777765 4788999999999999999999876655443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.36  E-value=0.9  Score=37.93  Aligned_cols=32  Identities=34%  Similarity=0.492  Sum_probs=25.9

Q ss_pred             cEEEE-CCC-HHHHHHHHHHHHCCCCEEEEecCC
Q 042352           50 RVIVI-GAG-LAGLAAATRLHSQGRPFVLLEASD   81 (445)
Q Consensus        50 dviII-GaG-~~GLsaA~~L~~~G~~V~vlE~~~   81 (445)
                      +|+|| ||+ =.|.+.|..|+++|++|.+.+++.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56555 654 478999999999999999999863