Citrus Sinensis ID: 042370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MAAFTNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAVSTNQNIFPSSVLPDIPGVGGQ
Secondary Structure (PSIPRED)
cccHHcccccEEEcHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccEEEEEEccccccccccEEEccEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHccccccccEEEEcccccccccccccEEcccccccccccccccccEEEEEEcccccccEEEcEEEEcccccEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccEEEEEEcccccccEEEEEEccEEEEcccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHccEEEEEcccHHEEccccccEccEEcccccEccccccccEEEEEEcccccccEEEEEEEEEcccEEEEcEEEEEEEEcccccccHHHHcHHcccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
MAAFTNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSlvsdfndqssspgrcitvtssksqndtvSEAFIggveitrpdlfnngIIVIHgiqgdisplsplscevqrmtwlpflfqssdhehyhwieAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYIsnvrlpvgttlptlkrgqsltvtragvvtgplRINLVRVMVPDIMNNLKIVVYGvnlpfpyfgatafdtdsigltdtdggeysdvvkptaaagtnilpnslltavstnqnifpssvlpdipgvggq
Flexible Loop (DISEMBL)
MAAFTNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSLVsdfndqssspGRCITvtssksqndtvSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGttlptlkrgqsltvtragvvtgplriNLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAVSTNqnifpssvlpdipgvggq
Low Complexity Region (SEG)
MAAFTNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAVSTNQNIFPSSVLPDIPGVGGQ
Disordered region (IsUnstruct)
****TNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPL**********************************SEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAVSTNQNIF**************
Disordered Region (DISOPRED)
********QLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPL****************************PLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGA********************************************QNIFPSSVLPD*PG****
Disordered Region (DISEMBL)
MAAFTNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSL***********GRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAVSTNQNIFPSSVLPDIPGVGGQ
Disordered Region (DISPRO)
****TNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAVSTNQNIFPSSVLPDIP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAFTNSLQLVTIFAFYLLIITKSAAFTDLETLFTATPLQKQATSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAVSTNQNIFPSSVLPDIPGVGGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q9FL53	353	Fasciclin-like arabinogal	yes	no	0.707	0.643	0.261	0.0002

>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana GN=FLA21 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 112/268 (41%), Gaps = 41/268 (15%)

Query: 19  LIITKSAAF---TDLETLFTATPLQKQATSLVSDFNDQSSSP-GRCI-TVTSSKS-QNDT 72
           L   + A+F   + L  LF    L      L+   +D    P G C+ T+   KS Q  T
Sbjct: 84  LFAIEDASFFNTSSLHPLFLKQLLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQIST 143

Query: 73  VSE----AFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDH 128
           V++    A +  V IT PD+F    +VIHG+ G  SPL P S     +   P L QS   
Sbjct: 144 VNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGPFSPLQPHS---DHLIHTP-LCQSDTT 199

Query: 129 EHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELI-------TLTTMTVFA 181
                 E  P+  S+     +  L +NGF   ++ +      ++        LT +T+ A
Sbjct: 200 NKTSNNEEVPV--SIDWTRIVQLLSSNGFVPFAIGLHSVLNRIVNDHNHHKNLTGVTILA 257

Query: 182 LDDMSIFSSS----------------LVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVT- 224
             ++   SS+                L Y     +    T+ TL   Q LT+TR  V + 
Sbjct: 258 TPNLVSLSSASPFLYEVVRHHILVQRLTYKDFASMSDKATVKTLDPYQDLTITRRNVNSS 317

Query: 225 -GPLRINLVRVMVPDIMNNLKIVVYGVN 251
            G   I+ V ++ PD+ ++   V++G++
Sbjct: 318 GGDFMISGVEIVDPDMFSSSNFVIHGIS 345

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
224081182	442	predicted protein [Populus trichocarpa]	0.722	0.524	0.520	4e-63
357519729	447	Fasciclin-like arabinogalactan protein [	0.660	0.474	0.554	7e-63
356528501	440	PREDICTED: uncharacterized protein LOC10	0.694	0.506	0.527	1e-61
356511115	444	PREDICTED: uncharacterized protein LOC10	0.669	0.484	0.530	2e-61
357519561	448	Fasciclin-like arabinogalactan protein [	0.651	0.466	0.565	5e-61
357473961	454	Fasciclin-like arabinogalactan protein [	0.660	0.466	0.545	9e-60
255576164	431	conserved hypothetical protein [Ricinus	0.700	0.522	0.532	1e-59
147787729	412	hypothetical protein VITISV_004737 [Viti	0.766	0.597	0.476	1e-54
225424518	412	PREDICTED: uncharacterized protein LOC10	0.766	0.597	0.476	3e-54
297737551	392	unnamed protein product [Vitis vinifera]	0.616	0.505	0.5	3e-46

>gi|224081182|ref|XP_002306324.1| predicted protein [Populus trichocarpa] gi|222855773|gb|EEE93320.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/273 (52%), Positives = 177/273 (64%), Gaps = 41/273 (15%)

Query: 56  SPGRCITVTSSKSQNDTVS----EAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSC 111
           SPGRCITVTS+  +ND+ +    + FIGGVEIT PDLFNNG+++IHGIQG I+PLSP SC
Sbjct: 144 SPGRCITVTSTSLKNDSATPSTVKVFIGGVEITHPDLFNNGVLIIHGIQGYIAPLSPFSC 203

Query: 112 EVQRMTWLPFLFQ--------SSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLA 163
           + +R++ L F FQ        S+ H+       QP IM LMLRDAMLRL++NGF++LSLA
Sbjct: 204 DFERLSSLSFPFQEGVTPHVTSTTHQQGIGTLVQPAIMRLMLRDAMLRLRSNGFTILSLA 263

Query: 164 MKVNCQELITLTTMTVFALDDMSIFSSSLVYISNV----------------RLPVGTTLP 207
           M+V   EL  L  MTVFALDD+SIFS S  YIS+V                RLPVG TLP
Sbjct: 264 MRVKYPELTNLVNMTVFALDDVSIFSGSHGYISSVRFHIVPNHYLSTADLERLPVGATLP 323

Query: 208 TLKRGQSLTVTRAGVVTG-----PLRINLVRVMVPDIMNNLKIVVYGVNLPFPYF---GA 259
           TL+RGQ+L VT AG +TG     P+RIN VRV VPD+M NLKIVV+ V LPFP      A
Sbjct: 324 TLERGQALVVTSAGGLTGFNTAVPMRINYVRVKVPDVMRNLKIVVHAVYLPFPRIHPTSA 383

Query: 260 TAFDTDSIGLTDTDGGEYSDVVKPTAAAGTNIL 292
            AFD + +G+    GGE  ++V     A + + 
Sbjct: 384 AAFD-EMMGI----GGEGQNIVAAEDGACSAVF 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519729|ref|XP_003630153.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|357519789|ref|XP_003630183.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355524175|gb|AET04629.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355524205|gb|AET04659.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 133/240 (55%), Positives = 165/240 (68%), Gaps = 28/240 (11%)

Query: 53  QSSSPGRCITVTSSKSQNDTVS----EAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSP 108
           ++ SPGRCITVTS    ++  +    + FIGGVEI +PDLFNNG++V+HG+QG +S LSP
Sbjct: 139 ETLSPGRCITVTSDSIHSNITTGGAPKVFIGGVEIAQPDLFNNGMVVVHGLQGFVSTLSP 198

Query: 109 LSCEVQRMTWLPFLF----QSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAM 164
            SC+V+RMT L F F    +SS H H H +   P IM LMLRDAMLRL+NNGFS+LSLAM
Sbjct: 199 FSCDVERMTSLSFPFHPDHRSSAHVHTHGVTVLPAIMRLMLRDAMLRLRNNGFSILSLAM 258

Query: 165 KVNCQELITLTTMTVFALDDMSIFSSSLVYISNVR----------------LPVGTTLPT 208
           KV   ELITL  MT+FA+DD+SIFS S  YISNVR                LPVGT LPT
Sbjct: 259 KVKYAELITLNNMTIFAVDDLSIFSGSQSYISNVRFHIIPNYYLSIADLEKLPVGTALPT 318

Query: 209 LKRGQSLTVTRA--GVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFG--ATAFDT 264
           L+RGQ L +T +  GV + P+RIN VRV V D++ N+KIVV+ V LPFP+    A A+DT
Sbjct: 319 LERGQPLLITTSGGGVTSAPMRINYVRVKVADVIRNVKIVVHSVYLPFPHINPIAAAYDT 378

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528501|ref|XP_003532841.1| PREDICTED: uncharacterized protein LOC100793476 [Glycine max]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/254 (52%), Positives = 169/254 (66%), Gaps = 31/254 (12%)

Query: 53  QSSSPGRCITVTS---SKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPL 109
           ++ SPG CITVTS    ++ N+T ++ F+GGVEIT+PDLFNNG++V+HG+QG +SPLSP 
Sbjct: 142 ETLSPGHCITVTSDTLHRNTNNTAAKVFVGGVEITQPDLFNNGMVVVHGLQGFVSPLSPF 201

Query: 110 SCEVQRMTWLPFLFQS---SDHEHYHWIE-----AQPL-IMSLMLRDAMLRLQNNGFSML 160
           SC+V+RM  L F F     S H  +H        AQP  +M LMLRDAMLRL+NNGFS+L
Sbjct: 202 SCDVERMNSLSFPFHPDHPSGHARHHLHHSNSPTAQPAAMMRLMLRDAMLRLRNNGFSIL 261

Query: 161 SLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVR----------------LPVGT 204
           +LAMKV   EL+TL  MTVFA+DD+SIFS S  YISNVR                LPVG 
Sbjct: 262 ALAMKVKYAELVTLNNMTVFAVDDLSIFSGSHAYISNVRFHIVPNHYLSIADLEKLPVGI 321

Query: 205 TLPTLKRGQSLTVTRA--GVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAF 262
            LPTL+RGQSL +T +  G    P+RIN VRV V D++ N+KIVV+ V LPFP+    A 
Sbjct: 322 ALPTLERGQSLLITTSGGGETLAPMRINYVRVRVSDVIRNVKIVVHSVYLPFPHINPVAA 381

Query: 263 DTDSIGLTDTDGGE 276
             DSI L  ++G E
Sbjct: 382 AYDSI-LGGSEGAE 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511115|ref|XP_003524275.1| PREDICTED: uncharacterized protein LOC100806312 [Glycine max]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/245 (53%), Positives = 164/245 (66%), Gaps = 30/245 (12%)

Query: 53  QSSSPGRCITVTS---SKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPL 109
           ++ SPGRCITVTS    ++ N+T ++ F+GGVEIT+PDLFNNG++V+HG+QG +SPLSP 
Sbjct: 142 ETLSPGRCITVTSDTLHRNTNNTAAKVFVGGVEITQPDLFNNGMVVVHGLQGYVSPLSPF 201

Query: 110 SCEVQRMTWLPFLFQ---SSDHEHYHWIEA-----QPL-IMSLMLRDAMLRLQNNGFSML 160
           SC+V+RM  L F F     S H  +H   +     QP  +M LMLRDAMLRL+NNGF +L
Sbjct: 202 SCDVERMNSLSFPFHPDHRSGHAQHHLHHSNSATVQPAAMMRLMLRDAMLRLRNNGFGIL 261

Query: 161 SLAMKVNCQELITLTTMTVFALDDMSIFSSSLVYISNVR----------------LPVGT 204
           +LAMKV   EL+TL  MTVFA+DD+SIFS S  YI NVR                LPVGT
Sbjct: 262 ALAMKVKYAELVTLNNMTVFAVDDLSIFSGSHAYIGNVRFHIVPNHYLSIADLEKLPVGT 321

Query: 205 TLPTLKRGQSLTVTRAGV--VTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAF 262
            LPTL+RGQSL +T +G      P+RIN VRV V D++ N+KIVV+ V LPFP+    A 
Sbjct: 322 ALPTLERGQSLLITTSGRGETLAPMRINYVRVKVADVIRNVKIVVHSVYLPFPHINPVAA 381

Query: 263 DTDSI 267
             DSI
Sbjct: 382 AYDSI 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519561|ref|XP_003630069.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355524091|gb|AET04545.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 134/237 (56%), Positives = 162/237 (68%), Gaps = 28/237 (11%)

Query: 56  SPGRCITVTS-SKSQNDTVSEA---FIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSC 111
           SPGRC+TVTS S  QN+T   A   FIGGVEIT+PDLFNNG++V+HG+QG  S LSP SC
Sbjct: 143 SPGRCVTVTSESIHQNNTSGSAPKVFIGGVEITQPDLFNNGMVVVHGLQGFASKLSPFSC 202

Query: 112 EVQRMTWLPFLF----QSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVN 167
           +V+RM+ L F F    +S  H H       P IM LMLRDAM+RL+NNGFS+LSLAMKV 
Sbjct: 203 DVERMSSLSFPFHPDHRSGAHVHTPGATVLPAIMRLMLRDAMVRLRNNGFSILSLAMKVK 262

Query: 168 CQELITLTTMTVFALDDMSIFSSSLVYISNVR----------------LPVGTTLPTLKR 211
             ELITL  MT+FA+DD+SIFS S  YISNVR                LPVGT LPTL+R
Sbjct: 263 YAELITLNNMTIFAVDDLSIFSGSQSYISNVRFHIIPNHYLSIADLEKLPVGTALPTLER 322

Query: 212 GQSLTVTRA--GVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFG--ATAFDT 264
           GQ L +T +  GV + P+RIN VRV V D++ N+KIVV+ V LPFP+    A A+DT
Sbjct: 323 GQPLLITTSGGGVTSAPMRINYVRVKVADVIRNVKIVVHSVYLPFPHINPIAAAYDT 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473961|ref|XP_003607265.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355508320|gb|AES89462.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]

 Score =  236 bits (603), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 131/240 (54%), Positives = 161/240 (67%), Gaps = 28/240 (11%)

Query: 53  QSSSPGRCITVTSSKSQNDTVS----EAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSP 108
           ++ SPGRC+TVTS     ++ S    + FIGGVEIT+PDLFNNG++V+HG+QG  S LSP
Sbjct: 140 ETLSPGRCVTVTSESIHPNSTSGGAPKVFIGGVEITQPDLFNNGMVVVHGLQGFASTLSP 199

Query: 109 LSCEVQRMTWLPFLF----QSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAM 164
            SC+V+RMT L F F    +SS H H       P IM LMLRD  LRL+NNGFS+LSLAM
Sbjct: 200 FSCDVERMTSLSFPFHPDHRSSAHVHTPGATVLPAIMRLMLRDTTLRLRNNGFSILSLAM 259

Query: 165 KVNCQELITLTTMTVFALDDMSIFSSSLVYISNVR----------------LPVGTTLPT 208
           KV  +ELITL  MT+FA+DD+SIFS S  YISNVR                LPVGT LPT
Sbjct: 260 KVKYEELITLNNMTIFAVDDLSIFSGSQSYISNVRFHIIPNRYLSIADLEKLPVGTALPT 319

Query: 209 LKRGQSLTVTRA--GVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFG--ATAFDT 264
           L+RGQ L +T +  GV   P+RIN VRV V D++ N+KIVV+ V LPFP+    A A+DT
Sbjct: 320 LERGQPLLITTSGGGVTLAPMRINYVRVKVADVIRNVKIVVHSVYLPFPHINPIADAYDT 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576164|ref|XP_002528976.1| conserved hypothetical protein [Ricinus communis] gi|223531566|gb|EEF33395.1| conserved hypothetical protein [Ricinus communis]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/250 (53%), Positives = 168/250 (67%), Gaps = 25/250 (10%)

Query: 56  SPGRCITVTSS--KSQNDTVS---EAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLS 110
           SPGRC+TVTS+  K+QN  VS   + FIGGVEIT PDLFNNG+I+IHGI+G ++PLSPLS
Sbjct: 146 SPGRCLTVTSTSLKNQNVNVSSIFKVFIGGVEITHPDLFNNGLIIIHGIRGYVAPLSPLS 205

Query: 111 CEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQE 170
           C+V+R+  L F   +     + ++     I+ LMLRDAMLRL+NNGFS+LSLA +V   E
Sbjct: 206 CDVERLNSLIFPVNNQQTSRHQFLPQPAAIIRLMLRDAMLRLRNNGFSILSLATRVKYGE 265

Query: 171 LITLTTMTVFALDDMSIFSSSLVYISNV----------------RLPVGTTLPTLKRGQS 214
           L++L+ MT+FALDD SIFS S  YIS++                RLP+G TLPTL+RGQS
Sbjct: 266 LVSLSNMTIFALDDASIFSGSHSYISSIRFHIVPNVYLSAADLERLPLGATLPTLERGQS 325

Query: 215 LTVT--RAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYF--GATAFDTDSIGLT 270
           L VT   AG  T P+RIN VR+ VPDI+ NLKIVV+ V LPFP     A AFD      +
Sbjct: 326 LVVTTSSAGGTTVPMRINYVRLKVPDIIRNLKIVVHSVYLPFPRIDPAAVAFDGILGVQS 385

Query: 271 DTDGGEYSDV 280
           DT G  ++ V
Sbjct: 386 DTSGSVHAAV 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787729|emb|CAN60831.1| hypothetical protein VITISV_004737 [Vitis vinifera]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/273 (47%), Positives = 166/273 (60%), Gaps = 27/273 (9%)

Query: 57  PGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRM 116
           PGRC+TVTS+   N+T  + FIGGVEIT PDLFNNG+IV+HG+ G +S LSP SC ++R+
Sbjct: 142 PGRCLTVTSAV--NNT--KIFIGGVEITHPDLFNNGLIVVHGLDGFVSHLSPFSCNIERV 197

Query: 117 TWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTT 176
             + F FQ SD  H     A   IM LMLRDAM+RL+ NGFS+L+LA+++   EL++L  
Sbjct: 198 NSVSFPFQPSDRSHSVPSFA---IMRLMLRDAMVRLRMNGFSILALALRLKYPELVSLQN 254

Query: 177 MTVFALDDMSIFSSSLVYISNVR----------------LPVGTTLPTLKRGQSLTVTRA 220
           MTVF LDD SIF+    Y+SNVR                LPV T LPTL+  Q L VT A
Sbjct: 255 MTVFTLDDASIFTGGQAYVSNVRFHIVPNRLLLAADLQKLPVATLLPTLEPDQKLKVTTA 314

Query: 221 GVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYS-D 279
           G    P+RIN VR+  PD+M+NLKIVV+ + +PFP+        D IG    DG E    
Sbjct: 315 GGXAMPIRINYVRIKKPDVMHNLKIVVHDLYMPFPHLHQAEAVVDGIGPLGLDGAEMEIP 374

Query: 280 VVKPTAAAGTNILPNSLLTAVSTNQNIFPSSVL 312
           V K  + AGT+    S   AV  N  I P++ L
Sbjct: 375 VNKSCSVAGTD---GSGSCAVVPNSEIKPTAEL 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424518|ref|XP_002281810.1| PREDICTED: uncharacterized protein LOC100247334 [Vitis vinifera] gi|297737558|emb|CBI26759.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/273 (47%), Positives = 166/273 (60%), Gaps = 27/273 (9%)

Query: 57  PGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRM 116
           PGRC+TVTS+   N+T  + FIGGVEIT PDLFNNG+IV+HG+ G +S LSP SC ++R+
Sbjct: 142 PGRCLTVTSAV--NNT--KIFIGGVEITHPDLFNNGLIVVHGLDGFVSHLSPFSCNIERV 197

Query: 117 TWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTT 176
             + F FQ SD  H     A   IM LMLRDAM+RL+ NGFS+L+LA+++   EL++L  
Sbjct: 198 NSVSFPFQPSDRSHSVPSFA---IMRLMLRDAMVRLRMNGFSILALALRLKYPELVSLQN 254

Query: 177 MTVFALDDMSIFSSSLVYISNVR----------------LPVGTTLPTLKRGQSLTVTRA 220
           MTVF LDD SIF+    Y+SNVR                LPV T LPTL+  Q L VT A
Sbjct: 255 MTVFTLDDASIFTGGQAYVSNVRFHIVPNRLLLAADLQKLPVATLLPTLEPDQKLKVTTA 314

Query: 221 GVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYFGATAFDTDSIGLTDTDGGEYS-D 279
           G    P+RIN VR+  PD+M+NLKIVV+ + +PFP+        D IG    DG E    
Sbjct: 315 GGGAMPIRINYVRIKKPDVMHNLKIVVHDLYMPFPHLHQAEAVVDGIGPLGLDGAEMEIP 374

Query: 280 VVKPTAAAGTNILPNSLLTAVSTNQNIFPSSVL 312
           V K  + AGT+    S   AV  N  I P++ L
Sbjct: 375 VNKSCSVAGTD---GSGSCAVVPNSEIKPTAEL 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737551|emb|CBI26752.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/222 (50%), Positives = 140/222 (63%), Gaps = 24/222 (10%)

Query: 53  QSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCE 112
           ++S PGRCITVTS+ +     S+ FI GVEIT PDLFNNG I++HG+ G  S LSP SC 
Sbjct: 129 ETSFPGRCITVTSASNN----SKIFIEGVEITHPDLFNNGFILVHGLDGFASHLSPFSCN 184

Query: 113 VQRMTWLPFLF-QSSDHEHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQEL 171
           V+R   L F   Q SD      +     ++ LML DAMLRL+ +GF +L+LAM+V   EL
Sbjct: 185 VERFATLSFSPPQPSDSPQ---VPPPFSVIRLMLSDAMLRLRISGFGILALAMRVKYSEL 241

Query: 172 ITLTTMTVFALDDMSIFSSSLVYISNVR----------------LPVGTTLPTLKRGQSL 215
           + L  MTVFALDD +IFS    YISNVR                LPV T LPTL+ GQ+L
Sbjct: 242 VQLQNMTVFALDDATIFSGGREYISNVRFHIVPNMLLMADDLNKLPVQTVLPTLEHGQTL 301

Query: 216 TVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPFPYF 257
            VT  G  + P+RIN VR+  PDI++NLKIVV+ + LPFP+ 
Sbjct: 302 KVTDGGGGSNPMRINYVRLKSPDIVHNLKIVVHSLFLPFPHL 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050186 hypothetical protein (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	98.56
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	98.19
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	97.1
COG2335	187	Secreted and surface protein containing fasciclin-	90.73
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	88.01

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=98.56  E-value=7.6e-08  Score=74.81  Aligned_cols=74  Identities=35%  Similarity=0.403  Sum_probs=58.4

Q ss_pred             EEEecCcchhhccccc---cc------cc-cc------------CCCCcccccccCCCeEEEEecCCcccceEEccEEee
Q 042370          178 TVFALDDMSIFSSSLV---YI------SN-VR------------LPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVM  235 (321)
Q Consensus       178 TIFAP~D~ai~~~~s~---yl------s~-lR------------LP~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~  235 (321)
                      |||||+|+||.+....   .+      .. ++            |..|..++|+. |+.|.|+..++ .+.+.||+++|.
T Consensus         1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~~~~~~Tl~-g~~l~v~~~~~-~~~i~in~~~v~   78 (99)
T smart00554        1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLNGGTLPTLA-GSKLRVTRSGD-SGTVTVNGARIV   78 (99)
T ss_pred             CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhccCCccccCC-CCEEEEEEeCC-CCeEEEcceEEE
Confidence            8999999999875331   11      11 11            66789999998 99999998764 247999999999


Q ss_pred             cCCceeCCeEEEeccCCCC
Q 042370          236 VPDIMNNLKIVVYGVNLPF  254 (321)
Q Consensus       236 ~PDif~n~~LVVHGv~~pF  254 (321)
                      .+|+..+. -+||+|++..
T Consensus        79 ~~di~~~n-Gvih~Id~vL   96 (99)
T smart00554       79 EADIAATN-GVVHVIDRVL   96 (99)
T ss_pred             ECCEecCC-eEEEEECcee
Confidence            99999875 8999999654

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=98.19  E-value=2e-06  Score=68.97  Aligned_cols=98  Identities=26%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             ChhHHHHHHh-hchh-hh-cCCCCeEEEecCcchhhcccc---cc-------ccc-cc------------CCCC-ccccc
Q 042370          156 GFSMLSLAMK-VNCQ-EL-ITLTTMTVFALDDMSIFSSSL---VY-------ISN-VR------------LPVG-TTLPT  208 (321)
Q Consensus       156 Gy~~mAlaL~-l~~~-~L-~~~~nlTIFAP~D~ai~~~~s---~y-------ls~-lR------------LP~G-T~LpT  208 (321)
                      .|+.|+-+|+ ..+. .+ ....+.|||||+|+||...+.   .+       +.. ++            |..+ ..++|
T Consensus         2 ~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~~~~~t   81 (128)
T PF02469_consen    2 DLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGKQTLET   81 (128)
T ss_dssp             TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHHEEEEB
T ss_pred             CHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccccccee
Confidence            3555555555 2222 25 456799999999999954311   11       111 11            7777 89999


Q ss_pred             ccCCCeEEEEecCCcccceEEcc-EEeecCCceeCCeEEEeccCCCCC
Q 042370          209 LKRGQSLTVTRAGVVTGPLRINL-VRVMVPDIMNNLKIVVYGVNLPFP  255 (321)
Q Consensus       209 Llpgq~LtVTts~~~~~~v~INg-V~I~~PDif~n~~LVVHGv~~pFp  255 (321)
                      ++.|+.+.|+.. ...+.+.+|+ .+|..+|+.-+. -+||.|+..+-
T Consensus        82 ~~~g~~~~v~~~-~~~~~~~v~~~a~i~~~~~~~~n-G~ih~id~vL~  127 (128)
T PF02469_consen   82 LLNGQPLRVSSS-PSNGTIYVNGKARIVKSDIEASN-GVIHIIDDVLI  127 (128)
T ss_dssp             SSTTCEEEEEEE-GGTTEEEECCEEEESEEEEEESS-EEEEEESS-TS
T ss_pred             ccCCCEEEEEEE-ecCCceEecCceEEEeCCEEeCC-EEEEEECceEC
Confidence            999999999988 2234799999 999999995555 88999998753

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=97.10  E-value=0.00081  Score=52.22  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=46.8

Q ss_pred             cCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCcccCCeEEEecccCCCCC
Q 042370           45 SLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISP  105 (321)
Q Consensus        45 sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdLfddG~lVIhGv~gffsp  105 (321)
                      .|..+.+++|+. |..|+|+.+.+.    +.++|||++|.++|+.-++ -+||++++.+-|
T Consensus        44 ~l~~~~~~~Tl~-g~~l~v~~~~~~----~~i~in~~~v~~~di~~~n-Gvih~Id~vL~P   98 (99)
T smart00554       44 DLLNGGTLPTLA-GSKLRVTRSGDS----GTVTVNGARIVEADIAATN-GVVHVIDRVLLP   98 (99)
T ss_pred             HhccCCccccCC-CCEEEEEEeCCC----CeEEEcceEEEECCEecCC-eEEEEECceeCC
Confidence            455688999987 999999888753    5799999999999998876 899999998765

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=90.73  E-value=0.64  Score=43.01  Aligned_cols=95  Identities=21%  Similarity=0.257  Sum_probs=60.1

Q ss_pred             HhCChhHHHHHHhhch--hhhcCCCCeEEEecCcchhhcccc----cccc--------cc-c------------CCCCcc
Q 042370          153 QNNGFSMLSLAMKVNC--QELITLTTMTVFALDDMSIFSSSL----VYIS--------NV-R------------LPVGTT  205 (321)
Q Consensus       153 rssGy~~mAlaL~l~~--~~L~~~~nlTIFAP~D~ai~~~~s----~yls--------~l-R------------LP~GT~  205 (321)
                      .+.-|.-+-.++.-..  +.|+.-.++|||||+|+||-+-+.    .++.        ++ .            +-.+..
T Consensus        56 ~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~~~~l~~~~~  135 (187)
T COG2335          56 NNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKITAADLKSSGS  135 (187)
T ss_pred             cCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcccHHHhhcccc
Confidence            3344666666655222  135666789999999999977532    2222        21 1            222333


Q ss_pred             cccccCCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCC
Q 042370          206 LPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNL  252 (321)
Q Consensus       206 LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~  252 (321)
                      ..| +.|.+|.|...++   ++.||.-.+..+|+-- ++-|||=|+.
T Consensus       136 v~t-~~G~~~~i~~~~~---~~~Vn~a~v~~~di~a-~NgvIhvID~  177 (187)
T COG2335         136 VKT-VQGADLKIKVTGG---GVYVNDATVTIADINA-SNGVIHVIDK  177 (187)
T ss_pred             cee-ecCceEEEEEcCC---cEEEeeeEEEeccEec-cCcEEEEEee
Confidence            333 3678888887765   4999998888888754 5668898883

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=88.01  E-value=0.43  Score=38.19  Aligned_cols=58  Identities=24%  Similarity=0.342  Sum_probs=45.3

Q ss_pred             hccCCCc-cccCCCCCCceEEEeecCCCCCccceEEECc-EEecCCCcccCCeEEEecccCCCCC
Q 042370           43 ATSLVSD-FNDQSSSPGRCITVTSSKSQNDTVSEAFIGG-VEITRPDLFNNGIIVIHGIQGDISP  105 (321)
Q Consensus        43 l~sL~~g-~KIpT~~pG~cLtVts~~~~~~~~~~v~INg-V~Is~pdLfddG~lVIhGv~gffsp  105 (321)
                      ...|..+ .+++|...|.-+.|+...+.    ++++||| +.|..+|+.-++ =+||.+++.+-|
T Consensus        69 ~~~l~~~~~~~~t~~~g~~~~v~~~~~~----~~~~v~~~a~i~~~~~~~~n-G~ih~id~vL~P  128 (128)
T PF02469_consen   69 SSDLRNGKQTLETLLNGQPLRVSSSPSN----GTIYVNGKARIVKSDIEASN-GVIHIIDDVLIP  128 (128)
T ss_dssp             HCHHHCHHEEEEBSSTTCEEEEEEEGGT----TEEEECCEEEESEEEEEESS-EEEEEESS-TSS
T ss_pred             hhhhccccccceeccCCCEEEEEEEecC----CceEecCceEEEeCCEEeCC-EEEEEECceECc
Confidence            3456677 78899899999999888322    7899999 999988874444 788999998876

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 6e-09
 Identities = 51/376 (13%), Positives = 100/376 (26%), Gaps = 128/376 (34%)

Query: 17  YLLIITKSAAFTDLETLFTATPLQKQATSLVSDFNDQSSSPGRCITVTSS---KSQNDTV 73
             L  T  +   ++   F    L+     L+S    +   P     +      +  ND  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-- 122

Query: 74  SEAFIGGVEITRPDLFN-----------NGIIVIHGIQG------------DISPLSPLS 110
           ++ F     ++R   +               ++I G+ G                   + 
Sbjct: 123 NQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 111 CEVQRMTWL-----------------------PFLFQSSDH-----EHYHWIEAQP--LI 140
            ++    WL                       P     SDH        H I+A+   L+
Sbjct: 182 FKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 141 MSLMLRDAMLRLQN-------NGFSMLSLAMKVNCQELITLTTMTVFALDDMSIFSSSLV 193
            S    + +L L N       N F+       ++C+ L+T T           +    L 
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLT-TR-------FKQVT-DFLS 282

Query: 194 YISNVRLPVGTTLPTLKRGQSLTVT------------RAGVVTGPLRINLVRVMVPDIMN 241
             +   + +     TL   +  ++             R  + T P R++++   + D + 
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 242 NLKIVVYGVNLPFPYFGATAFDTD-SIGLTDTDGGEYSDVVKPTAAAGTNILPNSLLTAV 300
                       + +       T     L   +  EY  +    +               
Sbjct: 343 TWD--------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--------------- 379

Query: 301 STNQNIFPSSVLPDIP 316
                +FP S    IP
Sbjct: 380 -----VFPPSA--HIP 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
2vxp_A	132	Transforming growth factor-beta-induced protein IG	98.55
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	98.4
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	98.36
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	98.32
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	97.36
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	96.62
2vxp_A	132	Transforming growth factor-beta-induced protein IG	94.92
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	94.7

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=98.55  E-value=8.7e-08  Score=78.45  Aligned_cols=101  Identities=27%  Similarity=0.231  Sum_probs=72.1

Q ss_pred             HHHHHHh-CChhHHHHHHhhc-hh-hhcCCCCeEEEecCcchhhccccccc----------cc-cc------------CC
Q 042370          148 AMLRLQN-NGFSMLSLAMKVN-CQ-ELITLTTMTVFALDDMSIFSSSLVYI----------SN-VR------------LP  201 (321)
Q Consensus       148 A~~~Lrs-sGy~~mAlaL~l~-~~-~L~~~~nlTIFAP~D~ai~~~~s~yl----------s~-lR------------LP  201 (321)
                      .+++|+. ..|+.+.-+++-. +. .|....+.|||||+|+||.+-+...+          .. ++            +.
T Consensus         4 i~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~l~   83 (132)
T 2vxp_A            4 VMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGIG   83 (132)
T ss_dssp             HHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTTCS
T ss_pred             HHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhhcc
Confidence            4566665 6788888888742 22 25566789999999999977533211          11 11            55


Q ss_pred             CCcccccccCCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCCC
Q 042370          202 VGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLP  253 (321)
Q Consensus       202 ~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~p  253 (321)
                      .+..++|+ .|+.|+|+..++   .+.||+.+|..+|+.-.. =|||.|++-
T Consensus        84 ~~~~~~tl-~G~~l~v~~~~~---~v~vn~a~v~~~di~a~N-GvIHvID~V  130 (132)
T 2vxp_A           84 ALVRLKSL-QGDKLEVSLKNN---VVSVNKEPVAEPDIMATN-GVVHVITNV  130 (132)
T ss_dssp             SCEEEEBT-TSSEEEEEEETT---EEEESSCBEEEEEEEETT-EEEEEESSC
T ss_pred             CCceEecC-CCCEEEEEEeCC---EEEEeccEEEEcceecCC-EEEEEECcE
Confidence            66788886 688999998765   589999999999986544 389999863

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=98.40  E-value=4.4e-07  Score=83.61  Aligned_cols=173  Identities=16%  Similarity=0.144  Sum_probs=104.2

Q ss_pred             HHhhHHHhhh-------ccCCCcc-----ccCCCCCCc--eEEEeecCCCCCccceEEECc----EEecCCCc-ccCCeE
Q 042370           34 FTATPLQKQA-------TSLVSDF-----NDQSSSPGR--CITVTSSKSQNDTVSEAFIGG----VEITRPDL-FNNGII   94 (321)
Q Consensus        34 ~~~~~~~~~l-------~sL~~g~-----KIpT~~pG~--cLtVts~~~~~~~~~~v~INg----V~Is~pdL-fddG~l   94 (321)
                      .++..|+||.       ..|..+.     .++|+..+.  .++|+.+.+    ..++.+||    .+|..+|+ +.||  
T Consensus        72 ~l~~iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~----~~~v~v~~g~~~a~v~~~di~~~NG--  145 (324)
T 1o70_A           72 KMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGS----DTVITVEGGGVNATVIQADVAQTNG--  145 (324)
T ss_dssp             HHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGG----GCEEEEEETTEEEEEEEEEEECSSE--
T ss_pred             HHHHHHHhcEeCCeecHHHHhhccCCCceEEEcCCCCceEEEEEeecCC----ceEEEEcCCceeEEEEeccccccCc--
Confidence            4567777774       2344443     677887654  334443222    15688885    88888886 5566  


Q ss_pred             EEecccCCCCCCCCccccccccCCCCCccCCCCCccccccccchhHHHHHHHHHHHHHHh-CChhHHHHHHhhc-hh-hh
Q 042370           95 VIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQN-NGFSMLSLAMKVN-CQ-EL  171 (321)
Q Consensus        95 VIhGv~gffspl~~~Sc~~~~~~s~~~P~~~s~~s~~~~~~~~~si~r~~lrdA~~~Lrs-sGy~~mAlaL~l~-~~-~L  171 (321)
                      |||.+++.+.|... +                                     ..++|+. ..|+.+..+++.. +. .|
T Consensus       146 vIhvID~VL~pp~~-t-------------------------------------i~~~l~~~~~fs~~~~~l~~~gl~~~L  187 (324)
T 1o70_A          146 YVHIIDHVLGVPYT-T-------------------------------------VLGKLESDPMMSDTYKMGKFSHFNDQL  187 (324)
T ss_dssp             EEEEESSCTTSCCS-C-------------------------------------HHHHHHHCGGGHHHHHHTTTTTTTGGG
T ss_pred             EEEEEchhhhhchh-h-------------------------------------HHHHhhcCchHHHHHHHHHhhCHHHHh
Confidence            89999999987431 0                                     1112222 3455555555421 22 24


Q ss_pred             c-CCCCeEEEecCcchhhcccc-----------c----cccc-cc---CCC-----------Cc------ccccccCCCe
Q 042370          172 I-TLTTMTVFALDDMSIFSSSL-----------V----YISN-VR---LPV-----------GT------TLPTLKRGQS  214 (321)
Q Consensus       172 ~-~~~nlTIFAP~D~ai~~~~s-----------~----yls~-lR---LP~-----------GT------~LpTLlpgq~  214 (321)
                      . ...+.|||||+|+||.+-+.           +    .+.. ++   +|.           +.      .++||.  +.
T Consensus       188 ~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~--~~  265 (324)
T 1o70_A          188 NNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFR--DS  265 (324)
T ss_dssp             GCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSS--SE
T ss_pred             CCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccC--Cc
Confidence            4 24579999999999976420           0    1111 11   222           11      378887  67


Q ss_pred             EEEEec--CCcccceEEc----cEEeecCCceeCCeEEEeccCCCCCC
Q 042370          215 LTVTRA--GVVTGPLRIN----LVRVMVPDIMNNLKIVVYGVNLPFPY  256 (321)
Q Consensus       215 LtVTts--~~~~~~v~IN----gV~I~~PDif~n~~LVVHGv~~pFp~  256 (321)
                      |+|+..  ++   .+.||    +.+|..+|+.-..- |||.|++..-+
T Consensus       266 l~v~~~~~~~---~v~v~~~~~~a~v~~~di~~~NG-vIHvID~VL~P  309 (324)
T 1o70_A          266 LSIRVEEEAG---RYVIIWNYKKINVYRPDVECTNG-IIHVIDYPLLE  309 (324)
T ss_dssp             EEEEEEEETT---EEEEEETTEEEEEEEEEEEETTE-EEEEESSCSCC
T ss_pred             EEEEEEecCC---EEEEEecCceeEEEEcccccCCC-eEEEeceeecC
Confidence            888753  33   47887    89999999984432 89999976644

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=98.36  E-value=3.5e-07  Score=75.26  Aligned_cols=99  Identities=25%  Similarity=0.246  Sum_probs=69.0

Q ss_pred             HHHHH-hCChhHHHHHHhhc-hh-hhcCCCCeEEEecCcchhhccccc---cc---------cc-cc------------C
Q 042370          149 MLRLQ-NNGFSMLSLAMKVN-CQ-ELITLTTMTVFALDDMSIFSSSLV---YI---------SN-VR------------L  200 (321)
Q Consensus       149 ~~~Lr-ssGy~~mAlaL~l~-~~-~L~~~~nlTIFAP~D~ai~~~~s~---yl---------s~-lR------------L  200 (321)
                      +++|+ +..|+.|..+|+-. +. .|....++|||||+|+||...+..   .+         .. ++            |
T Consensus         6 ~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~~~l   85 (137)
T 1w7d_A            6 VETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDL   85 (137)
T ss_dssp             GGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCTTTS
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcHHHh
Confidence            34444 34677776666532 22 255567899999999999775321   11         11 11            7


Q ss_pred             CCCcccccccCCCeEEEEecCCcccceEEccEEeecCCce-eCCeEEEeccCCCC
Q 042370          201 PVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIM-NNLKIVVYGVNLPF  254 (321)
Q Consensus       201 P~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif-~n~~LVVHGv~~pF  254 (321)
                      ..|..++|+ .|+.|+|+..++    +.|||.+|..+|+. .||  |||.|++-.
T Consensus        86 ~~~~~~~tl-~G~~l~v~~~~g----v~vn~a~v~~~di~~~NG--vIHvID~VL  133 (137)
T 1w7d_A           86 TEGMTAETV-EGGALTVTLEGG----PKVNGVSISQPDVDASNG--VIHVIDGVL  133 (137)
T ss_dssp             CSSEEEECT-TSCEEEEECTTS----CEETTEECSBCCCBCSSS--EEEBCSSCC
T ss_pred             cCCCeeecc-CCceEEEEecCC----EEEeCcEEEECCeecCCe--EEEEECeee
Confidence            778888886 588999998743    89999999999986 455  799999654

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=98.32  E-value=1.1e-06  Score=74.95  Aligned_cols=100  Identities=23%  Similarity=0.284  Sum_probs=72.0

Q ss_pred             HHHHHHHh-CChhHHHHHHh-----h-chh-hhcCCCCeEEEecCcchhhccccc---cc-------cc-cc--------
Q 042370          147 DAMLRLQN-NGFSMLSLAMK-----V-NCQ-ELITLTTMTVFALDDMSIFSSSLV---YI-------SN-VR--------  199 (321)
Q Consensus       147 dA~~~Lrs-sGy~~mAlaL~-----l-~~~-~L~~~~nlTIFAP~D~ai~~~~s~---yl-------s~-lR--------  199 (321)
                      +.+++|++ ..|+.|+.+|.     . .+. .|.... +|||||+|+||.+....   .+       .. ++        
T Consensus        29 ~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g~~  107 (163)
T 1nyo_A           29 PVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQT  107 (163)
T ss_dssp             CHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESCC
T ss_pred             CHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECCEE
Confidence            35666765 56999999998     2 222 365555 99999999999775321   11       11 11        


Q ss_pred             ----CCCCcccccccCCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCCCC
Q 042370          200 ----LPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPF  254 (321)
Q Consensus       200 ----LP~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~pF  254 (321)
                          |. | .++|+ .|+.|+|+..++   .+.||+.+|..+|+.- ..-|||.|++-.
T Consensus       108 ~~~~l~-g-~~~Tl-~G~~l~v~~~~~---~v~vn~a~V~~~di~a-~NGvIHvID~VL  159 (163)
T 1nyo_A          108 SPANVV-G-TRQTL-QGASVTVTGQGN---SLKVGNADVVCGGVST-ANATVYMIDSVL  159 (163)
T ss_dssp             CTTTSC-E-EEECT-TSSEEEEEECSS---CEEETTEECSSBCCCC-SSEEEBCBSSCC
T ss_pred             cHHHhC-C-ccccC-CCCEEEEEEECC---EEEEeccEEEECceEc-CCEEEEEECcEe
Confidence                44 4 67887 589999998765   5999999999999965 346999999654

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=97.36  E-value=0.00011  Score=67.54  Aligned_cols=102  Identities=15%  Similarity=0.151  Sum_probs=64.9

Q ss_pred             hCChhHHHHHHhhc---hh-hhcCCCCeEEEecCcchhhccccccc-------cc-cc------------CCCCc-----
Q 042370          154 NNGFSMLSLAMKVN---CQ-ELITLTTMTVFALDDMSIFSSSLVYI-------SN-VR------------LPVGT-----  204 (321)
Q Consensus       154 ssGy~~mAlaL~l~---~~-~L~~~~nlTIFAP~D~ai~~~~s~yl-------s~-lR------------LP~GT-----  204 (321)
                      +..|+.|.-+|+-.   +. .|....++|||||+|+||.......+       .. ++            |..+.     
T Consensus        21 ~~~~s~~~~~l~~ag~~l~~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~g~~~~~~l~~~~~~~~~  100 (324)
T 1o70_A           21 NGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIA  100 (324)
T ss_dssp             HHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSCC
T ss_pred             CCcHHHHHHHHHHHhHHHHHHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeCCeecHHHHhhccCCCce
Confidence            45577776666543   33 36666789999999999976522211       11 11            44443     


Q ss_pred             ccccccCCCeEEEEecC-CcccceEEcc----EEeecCCceeCCeEEEeccCCCCCC
Q 042370          205 TLPTLKRGQSLTVTRAG-VVTGPLRINL----VRVMVPDIMNNLKIVVYGVNLPFPY  256 (321)
Q Consensus       205 ~LpTLlpgq~LtVTts~-~~~~~v~INg----V~I~~PDif~n~~LVVHGv~~pFp~  256 (321)
                      .++||.....+.++-.+ +....+.+||    .+|..+|+.-+. =|||.|++...+
T Consensus       101 ~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~N-GvIhvID~VL~p  156 (324)
T 1o70_A          101 QVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTN-GYVHIIDHVLGV  156 (324)
T ss_dssp             CEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSS-EEEEEESSCTTS
T ss_pred             EEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEeccccccC-cEEEEEchhhhh
Confidence            78999866545554332 2233688986    889999986433 389999976644

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=96.62  E-value=0.004  Score=50.95  Aligned_cols=63  Identities=30%  Similarity=0.459  Sum_probs=48.5

Q ss_pred             HHhhHHHhhh-------ccCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCc-ccCCeEEEecccCCCCC
Q 042370           34 FTATPLQKQA-------TSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDL-FNNGIIVIHGIQGDISP  105 (321)
Q Consensus        34 ~~~~~~~~~l-------~sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdL-fddG~lVIhGv~gffsp  105 (321)
                      .++..|+||.       ..|..|.+++|+ .|..|+|+.+ +     + +.|||.+|..+|+ ..||  |||.+++.+-|
T Consensus        66 ~l~~lL~yHvv~~~~~~~~l~~~~~~~tl-~G~~l~v~~~-~-----g-v~vn~a~v~~~di~~~NG--vIHvID~VL~P  135 (137)
T 1w7d_A           66 KLTEILTYHVVPGEVMSSDLTEGMTAETV-EGGALTVTLE-G-----G-PKVNGVSISQPDVDASNG--VIHVIDGVLMP  135 (137)
T ss_dssp             HHHHHHHHHEEESCCCTTTSCSSEEEECT-TSCEEEEECT-T-----S-CEETTEECSBCCCBCSSS--EEEBCSSCCSS
T ss_pred             HHHHHHHhhEeCcEEcHHHhcCCCeeecc-CCceEEEEec-C-----C-EEEeCcEEEECCeecCCe--EEEEECeeeCC
Confidence            3456677774       356667777765 6888988765 3     5 8999999999997 4777  79999999887


Q ss_pred             C
Q 042370          106 L  106 (321)
Q Consensus       106 l  106 (321)
                      .
T Consensus       136 ~  136 (137)
T 1w7d_A          136 G  136 (137)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=94.92  E-value=0.015  Score=47.29  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=44.8

Q ss_pred             HHhhHHHhhh-------ccCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCc-ccCCeEEEecccCCC
Q 042370           34 FTATPLQKQA-------TSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDL-FNNGIIVIHGIQGDI  103 (321)
Q Consensus        34 ~~~~~~~~~l-------~sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdL-fddG~lVIhGv~gff  103 (321)
                      -++..|+||.       ..|..+.+++|+ .|..|+|+.+.      +.++|||.+|..+|+ ..||  |||.+++.+
T Consensus        63 ~l~~iL~yHvv~~~~~~~~l~~~~~~~tl-~G~~l~v~~~~------~~v~vn~a~v~~~di~a~NG--vIHvID~VL  131 (132)
T 2vxp_A           63 ELANILKYHIGDEILVSGGIGALVRLKSL-QGDKLEVSLKN------NVVSVNKEPVAEPDIMATNG--VVHVITNVL  131 (132)
T ss_dssp             HHHHHHHHSBBSSCCCSTTCSSCEEEEBT-TSSEEEEEEET------TEEEESSCBEEEEEEEETTE--EEEEESSCC
T ss_pred             HHHHHHHhcCcCceeehhhccCCceEecC-CCCEEEEEEeC------CEEEEeccEEEEcceecCCE--EEEEECcEe
Confidence            3456788887       234455566665 68888887653      459999999999997 4666  899999864

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=94.70  E-value=0.062  Score=45.51  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=45.8

Q ss_pred             HhhHHHhhh-------ccCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCcccCCeEEEecccCCCCCC
Q 042370           35 TATPLQKQA-------TSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPL  106 (321)
Q Consensus        35 ~~~~~~~~l-------~sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdLfddG~lVIhGv~gffspl  106 (321)
                      ++..|+||.       ..|. | +++|+ .|..|+|+.+.+      +++||+.+|..+|+.- ..-|||.|++.+-|.
T Consensus        94 L~~iL~yHvv~g~~~~~~l~-g-~~~Tl-~G~~l~v~~~~~------~v~vn~a~V~~~di~a-~NGvIHvID~VL~P~  162 (163)
T 1nyo_A           94 LTSILTYHVVAGQTSPANVV-G-TRQTL-QGASVTVTGQGN------SLKVGNADVVCGGVST-ANATVYMIDSVLMPP  162 (163)
T ss_dssp             HHHHHHHTEEESCCCTTTSC-E-EEECT-TSSEEEEEECSS------CEEETTEECSSBCCCC-SSEEEBCBSSCCCCC
T ss_pred             HHHHHHhceECCEEcHHHhC-C-ccccC-CCCEEEEEEECC------EEEEeccEEEECceEc-CCEEEEEECcEeCCC
Confidence            455677773       2344 3 56776 588999887643      5999999999999853 334899999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	97.34
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	97.14
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	95.79

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.34  E-value=0.00018  Score=55.92  Aligned_cols=84  Identities=15%  Similarity=0.191  Sum_probs=53.3

Q ss_pred             hhcCCCCeEEEecCcchhhccccccc-------cc-cc-----------------CCCCcccccccCCCeEEEEecCC-c
Q 042370          170 ELITLTTMTVFALDDMSIFSSSLVYI-------SN-VR-----------------LPVGTTLPTLKRGQSLTVTRAGV-V  223 (321)
Q Consensus       170 ~L~~~~nlTIFAP~D~ai~~~~s~yl-------s~-lR-----------------LP~GT~LpTLlpgq~LtVTts~~-~  223 (321)
                      .+....++|||||+|+||.......+       .. ++                 ......++|+..+.....+.... .
T Consensus        23 ~l~~~~~~TvFAPtn~Af~~~~~~~~~~~~~~l~~~l~yHiv~~~~~~~~l~~~~~~~~~~~~t~~g~~~~~~~~~~~~~  102 (140)
T d1o70a1          23 DINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGS  102 (140)
T ss_dssp             HHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGG
T ss_pred             HhcCCCCEEEEEECHHHHhcCChhhhcCCHHHHHHHHHhhccCCeEEHHHHhcCcccCceEeeecCCCceEEEEEeccce
Confidence            36666789999999999976533211       11 11                 23345688888777666664432 2


Q ss_pred             ccceEEc----cEEeecCCceeCCeEEEeccCCCC
Q 042370          224 TGPLRIN----LVRVMVPDIMNNLKIVVYGVNLPF  254 (321)
Q Consensus       224 ~~~v~IN----gV~I~~PDif~n~~LVVHGv~~pF  254 (321)
                      ...+.++    .-+|..+|+.-..- |||.|+...
T Consensus       103 ~~~~~~~~~~~~a~V~~~Di~~~NG-vIH~ID~VL  136 (140)
T d1o70a1         103 DTVITVEGGGVNATVIQADVAQTNG-YVHIIDHVL  136 (140)
T ss_dssp             GCEEEEEETTEEEEEEEEEEECSSE-EEEEESSCT
T ss_pred             eEEEEecCCcceEEEEeCCEecCCe-EEEEECCcc
Confidence            2234443    36888899876444 899999653

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.00035  Score=58.16  Aligned_cols=95  Identities=21%  Similarity=0.218  Sum_probs=63.7

Q ss_pred             HHHh-CChhHHHHHHhhc------hhh-hcCCCCeEEEecCcchhhccccc---ccc----ccc----------------
Q 042370          151 RLQN-NGFSMLSLAMKVN------CQE-LITLTTMTVFALDDMSIFSSSLV---YIS----NVR----------------  199 (321)
Q Consensus       151 ~Lrs-sGy~~mAlaL~l~------~~~-L~~~~nlTIFAP~D~ai~~~~s~---yls----~lR----------------  199 (321)
                      .+++ -.|+.+..++...      +.+ |.+ .+.|||||+|+||..-+..   .+.    .+|                
T Consensus        33 ~a~~~p~lstl~~Al~a~~~~~a~L~~~L~~-gpfTvFAPtn~AF~~l~~~~~~~l~~~~~~L~~iL~yHVv~g~~~~~~  111 (163)
T d1nyoa_          33 AASNNPELTTLTAALSGQLNPQVNLVDTLNS-GQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPAN  111 (163)
T ss_dssp             HHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-SSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESCCCTTT
T ss_pred             HHhcCCchHHHHHHHhhccccccchhHhhcC-CCeEEEEECcHHHHhcCHHHHHhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence            3444 3588888888643      222 333 6799999999999764321   111    111                


Q ss_pred             CCCCcccccccCCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCCC
Q 042370          200 LPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLP  253 (321)
Q Consensus       200 LP~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~p  253 (321)
                      +-  ..++| +.|+.|+|+..++   .+.||+.+|..+|+.-..- |||-|++-
T Consensus       112 l~--~~~~T-l~G~~l~v~~~~~---~i~v~~a~Vv~~di~a~NG-vIHvID~V  158 (163)
T d1nyoa_         112 VV--GTRQT-LQGASVTVTGQGN---SLKVGNADVVCGGVSTANA-TVYMIDSV  158 (163)
T ss_dssp             SC--EEEEC-TTSSEEEEEECSS---CEEETTEECSSBCCCCSSE-EEBCBSSC
T ss_pred             hh--hhhhh-ccCcceeEEecCC---EEEEeceEEEECCeecCCc-EEEEECcc
Confidence            32  23455 4689999998765   6999999999999886433 78999864

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.79  E-value=0.0065  Score=47.85  Aligned_cols=96  Identities=18%  Similarity=0.163  Sum_probs=54.3

Q ss_pred             CChhHHHHHHhhc-hh-hhcC-CCCeEEEecCcchhhccccc---------------cccc-cc----------------
Q 042370          155 NGFSMLSLAMKVN-CQ-ELIT-LTTMTVFALDDMSIFSSSLV---------------YISN-VR----------------  199 (321)
Q Consensus       155 sGy~~mAlaL~l~-~~-~L~~-~~nlTIFAP~D~ai~~~~s~---------------yls~-lR----------------  199 (321)
                      ..|+.+..+++.. +. .|.+ ..+.|||||+|+||.+....               .+.. ++                
T Consensus        11 p~ls~~~~~~~~s~l~~~L~~~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~~~~l~~il~~Hiv~g~~~~~~~~~~   90 (157)
T d1o70a2          11 PMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTMKDLV   90 (157)
T ss_dssp             GGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESSCCCHHHHH
T ss_pred             ccHHHHHHHHHhCCHHHHHhCCCCceEEEecCHHHHHHhhhhccchhhhhcCcccHHHHHHHheeEEecccccchhhhhh
Confidence            5666666665422 12 2433 34799999999999663211               1111 11                


Q ss_pred             ----CCCCcccccccCCCeEEEEecCCcccceEE----ccEEeecCCceeCCeEEEeccCCCC
Q 042370          200 ----LPVGTTLPTLKRGQSLTVTRAGVVTGPLRI----NLVRVMVPDIMNNLKIVVYGVNLPF  254 (321)
Q Consensus       200 ----LP~GT~LpTLlpgq~LtVTts~~~~~~v~I----NgV~I~~PDif~n~~LVVHGv~~pF  254 (321)
                          ...+...+|+.....+.+...++   .+.+    |+.+|..+|+.-..- |||-|++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~V~~~Di~a~NG-viHvID~VL  149 (157)
T d1o70a2          91 KFSQESGSVILPTFRDSLSIRVEEEAG---RYVIIWNYKKINVYRPDVECTNG-IIHVIDYPL  149 (157)
T ss_dssp             HHHHHSSSEEEECSSSEEEEEEEEETT---EEEEEETTEEEEEEEEEEEETTE-EEEEESSCS
T ss_pred             hhhccCCceeEEecCCcEEEEEEcCCc---EEEEecCCccceEEECCEecCCe-EEEEECcee
Confidence                12233344543334444454443   2333    679999999986444 899998655