Citrus Sinensis ID: 042384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
EKLEEDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGRRAHSGGLRVENRC
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccEEccccccHHHHHHHHHccccHHHcccccHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccccEccccccHHHHHHHHHccHHHcHcccccHHHHHHHHHHHHHccccccccEEEccc
Coil and Loop (DISEMBL)
EKLEEDNGRERLKRHRidvagrvwipdiwgqeeMLKDWIDCSAFDALLVPSGIMSARAALAQEGrrahsgglrvenrc
Flexible Loop (DISEMBL)
ekleedngrerlkrhridvagrvwipDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQegrrahsgglrvenrc
Low Complexity Region (SEG)
EKLEEDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGRRAHSGGLRVENRC
Disordered region (IsUnstruct)
**************HRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSA**********************
Disordered Region (DISOPRED)
***************RIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARA********************
Disordered Region (DISEMBL)
***********LKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAAL******************
Disordered Region (DISPRO)
*********ERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGRRAHS*G*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
EKLEEDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGRRAHSGGLRVENRC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
358248812	179	uncharacterized protein LOC100792377 [Gl	0.948	0.413	0.810	2e-29
255575685	172	conserved hypothetical protein [Ricinus	0.974	0.441	0.789	9e-29
356534171	173	PREDICTED: uncharacterized protein LOC10	0.948	0.427	0.783	1e-28
255637345	140	unknown [Glycine max]	0.948	0.528	0.783	3e-28
388513343	156	unknown [Lotus japonicus]	1.0	0.5	0.743	6e-28
147771714	164	hypothetical protein VITISV_023275 [Viti	0.948	0.451	0.756	2e-26
356572558	187	PREDICTED: uncharacterized protein LOC10	0.923	0.385	0.763	2e-26
147856410	196	hypothetical protein VITISV_018276 [Viti	0.948	0.377	0.729	3e-25
363808172	187	uncharacterized protein LOC100779351 [Gl	0.923	0.385	0.722	9e-24
357511051	180	hypothetical protein MTR_7g104540 [Medic	0.948	0.411	0.675	1e-23

>gi|358248812|ref|NP_001239944.1| uncharacterized protein LOC100792377 [Glycine max] gi|255646786|gb|ACU23865.1| unknown [Glycine max]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 68/74 (91%)

Query: 5   EDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEG 64
           ED+GRERLKRHR++VAGRVWIPDIWGQEE+LKDWIDC+AFDA LVPS I+ AR AL +EG
Sbjct: 106 EDSGRERLKRHRVEVAGRVWIPDIWGQEELLKDWIDCTAFDAPLVPSRIVMARTALVEEG 165

Query: 65  RRAHSGGLRVENRC 78
           RRA SGGLR+ENRC
Sbjct: 166 RRATSGGLRIENRC 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575685|ref|XP_002528742.1| conserved hypothetical protein [Ricinus communis] gi|223531836|gb|EEF33654.1| conserved hypothetical protein [Ricinus communis]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/76 (78%), Positives = 68/76 (89%)

Query: 3   LEEDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQ 62
           L +D GRERLKRHR++VAGRVWIPDIWGQEE+LKDWIDCSAFDA L+P+ IMSAR AL +
Sbjct: 97  LHDDCGRERLKRHRVEVAGRVWIPDIWGQEELLKDWIDCSAFDAPLLPNRIMSARTALVE 156

Query: 63  EGRRAHSGGLRVENRC 78
           EGRRA SG LR+ENRC
Sbjct: 157 EGRRATSGRLRIENRC 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534171|ref|XP_003535631.1| PREDICTED: uncharacterized protein LOC100815684 [Glycine max]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 68/74 (91%)

Query: 5   EDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEG 64
           +D+GRE+LKRHR++VAGRVWIPDIWGQEE+LKDWIDC+AFDA LVPS I+ AR AL +EG
Sbjct: 100 QDSGREKLKRHRVEVAGRVWIPDIWGQEEILKDWIDCTAFDAPLVPSRIVMARTALVEEG 159

Query: 65  RRAHSGGLRVENRC 78
           RRA SGGLR+ENRC
Sbjct: 160 RRATSGGLRIENRC 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637345|gb|ACU19002.1| unknown [Glycine max]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 68/74 (91%)

Query: 5   EDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEG 64
           +D+GRE+LKRHR++VAGRVWIPDIWGQEE+LKDWIDC+AFDA LVPS I+ AR AL +EG
Sbjct: 67  QDSGREKLKRHRVEVAGRVWIPDIWGQEEILKDWIDCTAFDAPLVPSRIVMARTALVEEG 126

Query: 65  RRAHSGGLRVENRC 78
           RRA SGGLR+ENRC
Sbjct: 127 RRATSGGLRIENRC 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513343|gb|AFK44733.1| unknown [Lotus japonicus]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 68/78 (87%)

Query: 1   EKLEEDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAAL 60
           E L ED+GRE+LKRHR++VAGRVWIPD+WGQE++LKDWIDCSAFDA LVPS I  AR AL
Sbjct: 79  ELLAEDSGREKLKRHRVEVAGRVWIPDMWGQEDLLKDWIDCSAFDAPLVPSKITMAREAL 138

Query: 61  AQEGRRAHSGGLRVENRC 78
             EGRRA++ GLR+ENRC
Sbjct: 139 VGEGRRANAAGLRIENRC 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771714|emb|CAN69280.1| hypothetical protein VITISV_023275 [Vitis vinifera]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 64/74 (86%)

Query: 5   EDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEG 64
           ED+GR+RLKRHR++VAGRVWIPDIWGQEE++KDW DCS FDA LV S IMSARAAL  EG
Sbjct: 91  EDSGRDRLKRHRVEVAGRVWIPDIWGQEELMKDWTDCSVFDASLVSSRIMSARAALMAEG 150

Query: 65  RRAHSGGLRVENRC 78
           RR +S  LR+ENRC
Sbjct: 151 RRPNSSRLRIENRC 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572558|ref|XP_003554435.1| PREDICTED: uncharacterized protein LOC100793911 [Glycine max]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 63/72 (87%)

Query: 6   DNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGR 65
           D+GRERL RHR++VAGRVWIPDIWGQEE+LKDWIDC+AFDA LVPS I +AR AL QE  
Sbjct: 107 DSGRERLNRHRVEVAGRVWIPDIWGQEELLKDWIDCTAFDATLVPSRISTAREALVQECT 166

Query: 66  RAHSGGLRVENR 77
           RA+S GLR+ENR
Sbjct: 167 RANSAGLRIENR 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856410|emb|CAN80332.1| hypothetical protein VITISV_018276 [Vitis vinifera]

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 62/74 (83%)

Query: 5   EDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEG 64
           ED+GRERLKRHR++VAG V IPD+WGQEE++KDW+DCS FDA LV S IMSARAAL  EG
Sbjct: 94  EDSGRERLKRHRVEVAGSVGIPDMWGQEELMKDWVDCSVFDASLVTSRIMSARAALVAEG 153

Query: 65  RRAHSGGLRVENRC 78
           RR    GLR+ENRC
Sbjct: 154 RRPSPSGLRIENRC 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808172|ref|NP_001242227.1| uncharacterized protein LOC100779351 [Glycine max] gi|255644510|gb|ACU22758.1| unknown [Glycine max]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 62/72 (86%)

Query: 6   DNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGR 65
           D+GRERL RHR++VAGRVWIP+IWGQEE+LKDWIDCSAFDA LVPS I +AR AL +E  
Sbjct: 107 DSGRERLNRHRVEVAGRVWIPEIWGQEELLKDWIDCSAFDAPLVPSRISTARKALVEECT 166

Query: 66  RAHSGGLRVENR 77
           RA++ GL +ENR
Sbjct: 167 RANAAGLIIENR 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511051|ref|XP_003625814.1| hypothetical protein MTR_7g104540 [Medicago truncatula] gi|355500829|gb|AES82032.1| hypothetical protein MTR_7g104540 [Medicago truncatula]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 62/74 (83%)

Query: 3   LEEDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQ 62
           LEED+ RERLKRHR++VAGRVWIP+IWGQE++LKDWIDC+AFDA LVPS I  ARAAL +
Sbjct: 98  LEEDSERERLKRHRVEVAGRVWIPEIWGQEDLLKDWIDCTAFDAPLVPSKITMARAALVE 157

Query: 63  EGRRAHSGGLRVEN 76
           EG + ++  L + N
Sbjct: 158 EGTKTNAAPLSIHN 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
TAIR|locus:2083243	140	AT3G52740 "AT3G52740" [Arabido	0.935	0.521	0.684	2.6e-24
TAIR|locus:2100167	116	AT3G44450 "AT3G44450" [Arabido	0.923	0.620	0.538	4.9e-14

TAIR|locus:2083243 AT3G52740 "AT3G52740" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 50/73 (68%), Positives = 58/73 (79%)

Query:     6 DNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGR 65
             D GRERLK+HR ++AGRVWIP+IWGQEE+LKDWIDCS FD  LVP+GI SAR AL +E R
Sbjct:    64 DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

Query:    66 RAHSGGLRVENRC 78
             RA S    + NRC
Sbjct:   124 RAASASGGLHNRC 136

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2100167 AT3G44450 "AT3G44450" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 42/78 (53%), Positives = 52/78 (66%)

Query:     7 NGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAAL-AQEGR 65
             +GR+RLKRHR +VAG+V IPD WG+E +L  W+D S FDA    S I+SARAAL A  G 
Sbjct:    39 SGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGD 98

Query:    66 RAHSGG-----LRVENRC 78
              A + G     LRVE+ C
Sbjct:    99 DAGARGSRPQRLRVESSC 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       78        78   0.00091  102 3  11 22  0.40    29
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.36u 0.12s 8.48t   Elapsed:  00:00:00
  Total cpu time:  8.36u 0.12s 8.48t   Elapsed:  00:00:00
  Start:  Fri May 10 06:06:46 2013   End:  Fri May 10 06:06:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019133001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (172 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
PF11455	65	DUF3018: Protein of unknown function (DUF3018); In	87.85

>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins

Probab=87.85  E-value=0.45  Score=30.50  Aligned_cols=21  Identities=43%  Similarity=1.074  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHhh--c----ceecCCcc
Q 042384            9 RERLKRHRIDVA--G----RVWIPDIW   29 (78)
Q Consensus         9 RERLKRhR~Eva--G----rV~IPd~W   29 (78)
                      +||.++||+.+-  |    .+|+||+=
T Consensus         2 ~~RV~khR~~lRa~GLRPVqiWVPDtr   28 (65)
T PF11455_consen    2 RERVRKHRERLRAAGLRPVQIWVPDTR   28 (65)
T ss_pred             hHHHHHHHHHHHHcCCCcceeeCCCCC
Confidence            789999999986  4    69999974

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00