Citrus Sinensis ID: 042437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MAKVHPLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEEEEEEEcccEEEEcccccEEEEEEEcccccccEEEEEcccccEEEEEEEEEcccccEEEEEccccccccccccEEEEEEcEEEEEEccccccccEEEEEEEccEEEEEEEcccccEEEEEEEEEEccccEEEcccEEEEEEEccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccHccccccEEEEEEEEEEEEccccEEEEEccccEEEEEcccccccccEEEEEcccccEEEEEEEcccHcccEEEEEccccccccccccEEEEEEccEEEEEccccccccEEEEEEccccEEEEEEcccccEEEEEEEEEEccccEEEcccEEEEEEcccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
makvhplpiVEVAEYVTSKRESFTIWMKSLVMQgngctvfnengeivyridnydnrgsneVYLMDLRGRVLFTILRKVWLfggwkgyrgdngdklnkerprfqvskkgqitllssssnaetscykleagksafkivdcsrgdVVAEARrkqssnsgvllgddvLTLVVEPQVDHSFIMALVTVYGLMRHRL
Flexible Loop (DISEMBL)
makvhplpivEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWlfggwkgyrgdngdklnkerprfqvskkgqitllssssnaeTSCYKLeagksafkivDCSRGDVVAEarrkqssnsgvllgdDVLTLVVEPQVDHSFIMALVTVYGLMRHRL
Low Complexity Region (SEG)
MAKVHPLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSgvllgddvltlvvEPQVDHSFIMALVTVYGLMRHRL
Disordered region (IsUnstruct)
******LPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRG*********************************CYKLEAGKSAFKIVDCSRGDVVA**********GVLLGDDVLTLVVEPQVDHSFIMALVTVYGLM****
Disordered Region (DISOPRED)
*****PLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRGDNGD*LNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL
Disordered Region (DISEMBL)
MAKVHPLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL
Disordered Region (DISPRO)
**********EVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKVHPLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q9LUM1	230	Protein LURP-one-related	yes	no	0.968	0.804	0.461	5e-38
Q9SH27	215	Protein LURP-one-related	no	no	0.958	0.851	0.450	7e-37
Q67XV7	217	Protein LURP-one-related	no	no	0.952	0.838	0.415	3e-36
Q8LG32	217	Protein LURP-one-related	no	no	0.952	0.838	0.415	3e-36
Q9ZVI6	196	Protein LURP-one-related	no	no	0.952	0.928	0.335	2e-17
Q9SSC7	210	Protein LURP-one-related	no	no	0.874	0.795	0.338	8e-16
A0MFL4	221	Protein LURP-one-related	no	no	0.869	0.751	0.307	7e-15
Q9LVZ8	220	Protein LURP-one-related	no	no	0.863	0.75	0.299	1e-14

>sp|Q9LUM1|LOR11_ARATH Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1

 Score =  157 bits (396), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 124/206 (60%), Gaps = 21/206 (10%)

Query: 1   MAKVHPLPIVEVA------EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYD 54
           M K+HP      A       Y+T+++ESFTIWMKSLV   NGCTVF+  G I+YR+DNY+
Sbjct: 23  MVKIHPDLTTSGAGEETSSPYLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYN 82

Query: 55  NRGSNEVYLMDLRGRVLFTILR-KVWLFGGWKGYRG-----DNGDKLNKERPR---FQVS 105
           ++   EVYLMDL G VLFT+ R K  LF  W+GYR      ++  KL   R +   FQV 
Sbjct: 83  SKSCREVYLMDLSGHVLFTLRRQKFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVP 142

Query: 106 KKGQITLL----SSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGD 161
            K   +       S  N E  CYK+    S+  I D + G ++AE +RKQS N G+ LGD
Sbjct: 143 NKDSSSSYRVNAGSCRNDEQYCYKMVTRGSSLAIED-NCGKLLAEVKRKQSIN-GLKLGD 200

Query: 162 DVLTLVVEPQVDHSFIMALVTVYGLM 187
           DVLT++VE QVDHSFI+ LV  + L+
Sbjct: 201 DVLTMMVESQVDHSFIIGLVLAHSLI 226

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH27|LOR4_ARATH Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1

 Score =  153 bits (386), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 126/193 (65%), Gaps = 10/193 (5%)

Query: 1   MAKVHPLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNE 60
           MA+V P   +  + Y++++RE+FT+WMKSLV Q NG TV+N NGEI YR++NYD + SNE
Sbjct: 1   MARVFPQAAIS-SPYMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-KCSNE 58

Query: 61  VYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQIT----LLSS 115
           V++MDL G +LFTI  +K+WLFG W  YR        +E       K+  I      +  
Sbjct: 59  VHIMDLHGNILFTIRKKKLWLFGSWYVYRECGSFTSTEEVKPCARIKRSSIRDGDWEVRD 118

Query: 116 SSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHS 175
            +N      + +  K AF+I+D   G+++A+ + KQSSN G+ LG+DVLTL V+P+VDHS
Sbjct: 119 ETNEVFWILRFDP-KFAFQIIDI-HGNIIAQVKPKQSSN-GITLGEDVLTLEVKPRVDHS 175

Query: 176 FIMALVTVYGLMR 188
            ++ LVTVYGL++
Sbjct: 176 LVVTLVTVYGLIK 188

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XV7|LOR3_ARATH Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890 PE=2 SV=2

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 126/214 (58%), Gaps = 32/214 (14%)

Query: 1   MAKVHP---LPIV------EVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRID 51
           M K++P    P+       ++  Y+T+++E FTIWMKSLV    GCTVF+  G ++YR+D
Sbjct: 13  MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72

Query: 52  NYDNRG-SNEVYLMDLRGRVLFTI-LRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQ 109
           NYD++  SNEVY MDL G++LFT+  +K+  F  W+GY        N    RF++ K  +
Sbjct: 73  NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY--------NSTGTRFRLRKIFK 124

Query: 110 ITLLSSSSNA------------ETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGV 157
           I    SSS+             + SCYK+    S F I D S G ++AE + K S  SG+
Sbjct: 125 ILPRESSSSYKVVMGSRIVDGDQQSCYKIVNRGSVFAIKDGS-GRLMAEVKNKLSDISGL 183

Query: 158 LLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
            LGDDVLT++VEPQ+DHS IM +V  Y L + +L
Sbjct: 184 DLGDDVLTMMVEPQLDHSLIMGIVIAYKLTKCKL 217

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG32|LOR2_ARATH Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870 PE=2 SV=2

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 126/214 (58%), Gaps = 32/214 (14%)

Query: 1   MAKVHP---LPIV------EVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRID 51
           M K++P    P+       ++  Y+T+++E FTIWMKSLV    GCTVF+  G ++YR+D
Sbjct: 13  MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72

Query: 52  NYDNRG-SNEVYLMDLRGRVLFTI-LRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQ 109
           NYD++  SNEVY MDL G++LFT+  +K+  F  W+GY        N    RF++ K  +
Sbjct: 73  NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY--------NSTGTRFRLRKIFK 124

Query: 110 ITLLSSSSNA------------ETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGV 157
           I    SSS+             + SCYK+    S F I D S G ++AE + K S  SG+
Sbjct: 125 ILPRESSSSYKVVMGSRIVDGDQQSCYKIVNRGSVFAIKDGS-GRLMAEVKNKLSDISGL 183

Query: 158 LLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
            LGDDVLT++VEPQ+DHS IM +V  Y L + +L
Sbjct: 184 DLGDDVLTMMVEPQLDHSLIMGIVIAYKLTKCKL 217

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 15/197 (7%)

Query: 1   MAKVHPLPIVEVAEYVTSKRES--FTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGS 58
           M KVHP       E +   + +   T+W KSL+   +G TV+N NGE+V+R+DNY N   
Sbjct: 1   MTKVHPKFPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60

Query: 59  NEVYLMDLRGRVLFTILRKVWLFGG-WKGYRGDNGDKLNKERPRFQVSKKGQIT----LL 113
           + + LMD  G  L +I RK    G  W  Y G+      +  P F   K   I      L
Sbjct: 61  DNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGE-----TERDPIFTARKNVSIISNRKSL 115

Query: 114 SSSSNAETSCYKLEA--GKSAFKIVDCSRG-DVVAEARRKQSSNSGVLLGDDVLTLVVEP 170
           +  S  +T  Y++E   G+ + KI+D  R     AE +RK++   GV  G DV  L+VE 
Sbjct: 116 AWVSAKKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVES 175

Query: 171 QVDHSFIMALVTVYGLM 187
           +++    MAL  +   M
Sbjct: 176 EMEPRVAMALTIILDQM 192

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%)

Query: 14  EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNY---DNRGSNEVYLMDLRGRV 70
           E++  +  S T+   SL   G+G TV++  G +V+R+D+Y   + R ++EV LMD  GR 
Sbjct: 10  EFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRC 69

Query: 71  LFTILRKVWLFGG-WKGYRGDNGDKLNKERPRFQVSKKGQITLLSSS----SNAETSCYK 125
           L T+ RK       W+GY G+  D    ++P F V +   I   S +     + + S Y 
Sbjct: 70  LLTLRRKRPSLRRRWEGYLGERSDG---QKPIFGVRRSSIIGRNSVTVEVYGDYQCSEYL 126

Query: 126 LEA--GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTV 183
           +E   G     +V+      VAE RRK  +++ V+LG DV +L V+P  D +F M LV V
Sbjct: 127 IEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLV 186

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 16/182 (8%)

Query: 22  SFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILR--KVW 79
           + T+W KSL++   G TV + NG+++YR+DNY      E+ LMD  G  L  + R  K+ 
Sbjct: 38  TLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKIT 97

Query: 80  LFGGWKGYRGDN--GDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGK------- 130
           L   W  Y  ++  G+    + P + + K  ++ +LS+ S+     Y     K       
Sbjct: 98  LVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIK 157

Query: 131 -----SAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTVYG 185
                 + KIV       V E +RK+    GV  G DV  LVV P  D    MALV +  
Sbjct: 158 GSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMALVLLLD 217

Query: 186 LM 187
            M
Sbjct: 218 QM 219

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 12/177 (6%)

Query: 15  YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNY--DNRGSNEVYLMDLRGRVLF 72
           Y+  + +  T+   SL   G+G   ++  G+I++R+D+Y  D R ++E+ LMD  G+ L 
Sbjct: 25  YLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLL 84

Query: 73  TILRK-VWLFGGWKGYRGDNGDKLNKERPRFQVSKK---GQITLLSSSSNAETSCYKLEA 128
           T+ RK   L   W+G+ G+  +    ++P F V +    G+ T+     +     Y ++ 
Sbjct: 85  TVKRKRPTLHQRWEGFLGERSEG---QKPIFSVRRSSIIGRCTMEVEVYDGTGEEYIIDG 141

Query: 129 --GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTV 183
              + +  I D  +   VAE +RK  +++ V+LG DV TL ++P  D +F M LV V
Sbjct: 142 DFSQRSCLIYDTKKC-TVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVV 197

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
224071818	206	predicted protein [Populus trichocarpa]	0.984	0.912	0.607	7e-59
224058555	206	predicted protein [Populus trichocarpa]	0.984	0.912	0.622	4e-58
297742543	210	unnamed protein product [Vitis vinifera]	0.984	0.895	0.584	1e-55
225426371	204	PREDICTED: protein LURP-one-related 4 [V	0.984	0.921	0.584	1e-55
255537415	209	GTP binding protein, putative [Ricinus c	0.979	0.894	0.577	1e-53
225426373	206	PREDICTED: protein LURP-one-related 4 [V	0.984	0.912	0.564	2e-51
297742542	399	unnamed protein product [Vitis vinifera]	0.984	0.471	0.564	3e-51
225426375	202	PREDICTED: protein LURP-one-related 4 [V	0.984	0.930	0.551	8e-49
255537417	195	GTP binding protein, putative [Ricinus c	0.984	0.964	0.535	2e-46
224058557	194	predicted protein [Populus trichocarpa]	0.968	0.953	0.54	2e-46

>gi|224071818|ref|XP_002303578.1| predicted protein [Populus trichocarpa] gi|222841010|gb|EEE78557.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (591), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 127/209 (60%), Positives = 153/209 (73%), Gaps = 21/209 (10%)

Query: 1   MAKVHPLPIVEVAE-------YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNY 53
           MAKVH LP V+ +        Y++SK E+FTIWMKSLVMQ NGCTV+NENGE+VYR+DNY
Sbjct: 1   MAKVHALPQVDSSSCSTSTNSYISSKPETFTIWMKSLVMQTNGCTVYNENGEVVYRVDNY 60

Query: 54  DNRGSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSK------ 106
           D +GSN+VYLMDL+G VLFTIL RK++ F  W+GY+ D G KL  + P FQ         
Sbjct: 61  DKKGSNKVYLMDLKGNVLFTILRRKLFFFRQWRGYKSD-GLKLRNQEPYFQAKSTEIFQG 119

Query: 107 --KGQITLLSSSSNAETSCYKLE--AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDD 162
               +IT+ SS +  +   YKLE  AGK AFKI + S G++VAEA+RKQSS SGVLLGDD
Sbjct: 120 NLSCRITVRSSEAPDQRCHYKLESLAGKLAFKITN-SNGEIVAEAKRKQSS-SGVLLGDD 177

Query: 163 VLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
           VLTLVVEP VDHSFI+ LVTVYGLM H+L
Sbjct: 178 VLTLVVEPHVDHSFIIGLVTVYGLMHHKL 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058555|ref|XP_002299542.1| predicted protein [Populus trichocarpa] gi|222846800|gb|EEE84347.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 154/209 (73%), Gaps = 21/209 (10%)

Query: 1   MAKVHPLPIVEVAEYVTS------KRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYD 54
           MAKVH  P V+ +    S      K E+FTIWMKSL+MQ NGCTVFN+NGEIVYR+DNYD
Sbjct: 1   MAKVHAFPQVDSSSCSASTSCMSSKPETFTIWMKSLLMQTNGCTVFNKNGEIVYRVDNYD 60

Query: 55  NR-GSNEVYLMDLRGRVLFTILR-KVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQI-- 110
            + GSNEVYLMDL+G VLFTILR K++LF  WKGY+ D G KL  + P FQV ++ +I  
Sbjct: 61  KKAGSNEVYLMDLKGNVLFTILRRKLFLFRQWKGYKSD-GLKLKTQEPYFQVKRRSEIFE 119

Query: 111 -----TLLSSSSNAETSC-YKLEA--GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDD 162
                 +   SS+A+ SC YKLEA  GK AFKI + S G++VAEA+RK+SS  GVLLGDD
Sbjct: 120 GDLSCQITVRSSDAQESCSYKLEALSGKLAFKITN-SNGEIVAEAKRKRSSK-GVLLGDD 177

Query: 163 VLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
           VLTLVVEP  DHSFIMALVTVYGLM H+L
Sbjct: 178 VLTLVVEPHTDHSFIMALVTVYGLMHHKL 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742543|emb|CBI34692.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 155/207 (74%), Gaps = 19/207 (9%)

Query: 1   MAKVHP-----LPIVEVAE-YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYD 54
           MAKVHP      P+   ++  +TSKRE+FTIWMKSLV+QGNGCTVFN +GEIVYRIDNYD
Sbjct: 1   MAKVHPQTFTAAPLSPPSDSCITSKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNYD 60

Query: 55  NRGSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLL 113
            + S+EVYLMDL+G+VLFTIL RK+ +FG W+GY+  NG K N ++P FQV K  +I   
Sbjct: 61  KKCSSEVYLMDLQGKVLFTILQRKLRVFGRWEGYK-SNGSKGNNQKPWFQVRKNCRILGG 119

Query: 114 SSS-------SNAETSCYKLEA--GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVL 164
            SS       + A++ CY+++   GKSAFKIVD S+G ++AE  +KQ+S SGV+LG+DVL
Sbjct: 120 GSSCQVTVRPNEAQSYCYRIQGLTGKSAFKIVD-SQGGLLAEVEQKQTS-SGVVLGEDVL 177

Query: 165 TLVVEPQVDHSFIMALVTVYGLMRHRL 191
            LVVEP VDHS +MALV VYGL+ HR+
Sbjct: 178 NLVVEPHVDHSLVMALVAVYGLIHHRI 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426371|ref|XP_002269437.1| PREDICTED: protein LURP-one-related 4 [Vitis vinifera]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 155/207 (74%), Gaps = 19/207 (9%)

Query: 1   MAKVHP-----LPIVEVAE-YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYD 54
           MAKVHP      P+   ++  +TSKRE+FTIWMKSLV+QGNGCTVFN +GEIVYRIDNYD
Sbjct: 1   MAKVHPQTFTAAPLSPPSDSCITSKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNYD 60

Query: 55  NRGSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLL 113
            + S+EVYLMDL+G+VLFTIL RK+ +FG W+GY+  NG K N ++P FQV K  +I   
Sbjct: 61  KKCSSEVYLMDLQGKVLFTILQRKLRVFGRWEGYK-SNGSKGNNQKPWFQVRKNCRILGG 119

Query: 114 SSS-------SNAETSCYKLEA--GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVL 164
            SS       + A++ CY+++   GKSAFKIVD S+G ++AE  +KQ+S SGV+LG+DVL
Sbjct: 120 GSSCQVTVRPNEAQSYCYRIQGLTGKSAFKIVD-SQGGLLAEVEQKQTS-SGVVLGEDVL 177

Query: 165 TLVVEPQVDHSFIMALVTVYGLMRHRL 191
            LVVEP VDHS +MALV VYGL+ HR+
Sbjct: 178 NLVVEPHVDHSLVMALVAVYGLIHHRM 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537415|ref|XP_002509774.1| GTP binding protein, putative [Ricinus communis] gi|223549673|gb|EEF51161.1| GTP binding protein, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/213 (57%), Positives = 146/213 (68%), Gaps = 26/213 (12%)

Query: 1   MAKVHPLPIVEVAE-------------YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIV 47
           MAKVHP  ++   E                SK ES+TIWMKSLVMQ NGCTV+N+NGEIV
Sbjct: 1   MAKVHPFLLLASDEEDSACSSSSTTSCMTASKTESYTIWMKSLVMQANGCTVYNDNGEIV 60

Query: 48  YRIDNYDNRGSNEVYLMDLRGRVLFTILRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKK 107
           YR+DNYD +GS+EVYLMDL+GRVLFTI RK  LF  WKGY+ D   K  K++P FQV + 
Sbjct: 61  YRVDNYDKKGSSEVYLMDLKGRVLFTI-RKQLLFRQWKGYKSDEL-KSRKQKPFFQVRQS 118

Query: 108 GQI-------TLLSSSSNAETSCYKLE--AGKSAFKIVDCSRGDVVAEARRKQSSNSGVL 158
            +I        +   S   +   YKL+  AGKSAFKI D S G +VA+A RKQ+S +G++
Sbjct: 119 SRILKRNLSCKIAVRSGTWQDGYYKLKASAGKSAFKITD-SNGGLVAKATRKQTS-TGIV 176

Query: 159 LGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
           LGDDVLTL VEP VDHSFIMALVTVYGLM HRL
Sbjct: 177 LGDDVLTLAVEPHVDHSFIMALVTVYGLMIHRL 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426373|ref|XP_002269469.1| PREDICTED: protein LURP-one-related 4 [Vitis vinifera]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/209 (56%), Positives = 148/209 (70%), Gaps = 21/209 (10%)

Query: 1   MAKVHPLPIVEVA--------EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDN 52
           MAKVHP     V           +TS+RE+FT+WMKSLV+QGNG TVFN +GEIVYRIDN
Sbjct: 1   MAKVHPQMPAAVPPPPPPPSDSCITSRRETFTLWMKSLVIQGNGYTVFNSDGEIVYRIDN 60

Query: 53  YDNRGSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQIT 111
           YD + S+EVYLMDL+G+VLFTIL RK+ +FG W+GY+  NG K + ++P FQV K  +I 
Sbjct: 61  YDKKCSSEVYLMDLQGKVLFTILQRKLHVFGRWEGYKC-NGSKADSQKPCFQVRKHCRIL 119

Query: 112 LLSSSS------NAETSC-YKLE--AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDD 162
              SS       N   SC Y+++  AGKS FKIV+ S G V+AE ++KQ+S SGV+LGDD
Sbjct: 120 GGGSSCEVTVRPNEAQSCYYRIQGLAGKSTFKIVN-SEGGVMAEVKQKQTS-SGVVLGDD 177

Query: 163 VLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
           VL LVVEP VDHS +MALV V GL+ HR+
Sbjct: 178 VLNLVVEPHVDHSLVMALVAVCGLIHHRM 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742542|emb|CBI34691.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/209 (56%), Positives = 148/209 (70%), Gaps = 21/209 (10%)

Query: 1   MAKVHPLPIVEVA--------EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDN 52
           MAKVHP     V           +TS+RE+FT+WMKSLV+QGNG TVFN +GEIVYRIDN
Sbjct: 194 MAKVHPQMPAAVPPPPPPPSDSCITSRRETFTLWMKSLVIQGNGYTVFNSDGEIVYRIDN 253

Query: 53  YDNRGSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQIT 111
           YD + S+EVYLMDL+G+VLFTIL RK+ +FG W+GY+  NG K + ++P FQV K  +I 
Sbjct: 254 YDKKCSSEVYLMDLQGKVLFTILQRKLHVFGRWEGYKC-NGSKADSQKPCFQVRKHCRIL 312

Query: 112 LLSSSS------NAETSC-YKLE--AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDD 162
              SS       N   SC Y+++  AGKS FKIV+ S G V+AE ++KQ+S SGV+LGDD
Sbjct: 313 GGGSSCEVTVRPNEAQSCYYRIQGLAGKSTFKIVN-SEGGVMAEVKQKQTS-SGVVLGDD 370

Query: 163 VLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
           VL LVVEP VDHS +MALV V GL+ HR+
Sbjct: 371 VLNLVVEPHVDHSLVMALVAVCGLIHHRM 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426375|ref|XP_002269503.1| PREDICTED: protein LURP-one-related 4 [Vitis vinifera]

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 150/205 (73%), Gaps = 17/205 (8%)

Query: 1   MAKVHPLPIVEVAE----YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNR 56
           MAKVHP      +     Y+TS+RE+FT+WMKSLV++GNG TVFN +GEIVYR+DNYD +
Sbjct: 1   MAKVHPQRPAPPSPPSDSYITSRRETFTLWMKSLVIRGNGYTVFNSDGEIVYRMDNYDKK 60

Query: 57  GSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSS 115
            S+EVYLMDL+G+VLFTIL RK+ +FG W+GY+  +G K+  ++P FQV K  +I    S
Sbjct: 61  CSSEVYLMDLQGKVLFTILRRKLRVFGRWEGYKC-SGSKVGSQKPCFQVRKHCRILGGGS 119

Query: 116 S-------SNAETSCYKLE--AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTL 166
           S       + A++  Y+++  AGKS FKIV+ S G V+AE ++KQ+S SGV+LGDDVL L
Sbjct: 120 SCEVTVRPNEAQSYHYRIQGLAGKSTFKIVN-SEGGVMAEVKQKQTS-SGVVLGDDVLDL 177

Query: 167 VVEPQVDHSFIMALVTVYGLMRHRL 191
           VVEP VDHS +MALV V GL+ HR+
Sbjct: 178 VVEPHVDHSLVMALVAVCGLIHHRM 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537417|ref|XP_002509775.1| GTP binding protein, putative [Ricinus communis] gi|223549674|gb|EEF51162.1| GTP binding protein, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 135/198 (68%), Gaps = 10/198 (5%)

Query: 1   MAKVHPLPIVEVAEY--VTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGS 58
           MAKV P        +  +T +RE+FT+WMKSLV   NGCTVF+ NGEIVYR++NYD + S
Sbjct: 1   MAKVFPHRAAPSPAFDLMTFRRETFTVWMKSLVCHTNGCTVFDTNGEIVYRVENYDKKCS 60

Query: 59  NEVYLMDLRGRVLFTILRK-VWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSS 117
           +EVYLMDLRGRVL TI RK + LFG W GYR +  D +NKE+P FQV K   I + + + 
Sbjct: 61  SEVYLMDLRGRVLVTIRRKRLLLFGSWYGYRWNVAD-INKEKPWFQVRKCCSICMGNLAC 119

Query: 118 NAETSCYKLEAGK----SAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVD 173
                  K    K    +AF+IVD   GD VAE ++KQSS SG+ LGDDVLTL+VEP +D
Sbjct: 120 QVTVGFDKYWIVKLGQRAAFRIVD-FEGDAVAEVKQKQSS-SGITLGDDVLTLIVEPHMD 177

Query: 174 HSFIMALVTVYGLMRHRL 191
           HS +MA++TVYGL+  +L
Sbjct: 178 HSLVMAIITVYGLINRKL 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058557|ref|XP_002299543.1| predicted protein [Populus trichocarpa] gi|222846801|gb|EEE84348.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 142/200 (71%), Gaps = 15/200 (7%)

Query: 1   MAKVHPL---PIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRG 57
           MAKV P    P ++   +V+ +R+++TIWMKSL+ Q NGCTVF+ +G+IVYR+DNYD + 
Sbjct: 1   MAKVFPQSQRPTLD--PFVSFERQTYTIWMKSLLCQTNGCTVFDSDGDIVYRVDNYDKKC 58

Query: 58  SNEVYLMDLRGRVLFTILRK-VWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSS 116
            N+VYLMDLRGRVL TILRK +  FG W GYR ++    NKE+P FQV K  +   + S 
Sbjct: 59  RNKVYLMDLRGRVLVTILRKRLHCFGCWYGYRWNS--YANKEKPWFQVKKYCRFICMGSF 116

Query: 117 SNAET---SCYKLE--AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQ 171
           +   T     Y +E  A K+AF+IV    G+V+AE ++KQ S SG+ LGDDVLTLVVEP 
Sbjct: 117 ACQVTVGFEKYWVEKLASKTAFRIVGID-GNVIAEVKQKQLS-SGITLGDDVLTLVVEPH 174

Query: 172 VDHSFIMALVTVYGLMRHRL 191
           VDHS IMA+VTVYGL++H+L
Sbjct: 175 VDHSLIMAIVTVYGLIKHKL 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2091040	230	AT3G14260 "AT3G14260" [Arabido	0.968	0.804	0.422	1.4e-30
TAIR|locus:2197036	217	AT1G53870 "AT1G53870" [Arabido	0.937	0.824	0.393	2.7e-29
TAIR|locus:2197046	580	AT1G53880 "AT1G53880" [Arabido	0.890	0.293	0.386	2.3e-27
TAIR|locus:2814880	580	AT1G53900 "AT1G53900" [Arabido	0.890	0.293	0.386	2.3e-27
TAIR|locus:2064179	196	AT2G38640 "AT2G38640" [Arabido	0.963	0.938	0.302	3e-14
TAIR|locus:2016299	210	AT1G80120 "AT1G80120" [Arabido	0.874	0.795	0.305	1e-13
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.895	0.777	0.258	2.2e-11
TAIR|locus:2160427	221	AT5G41590 "AT5G41590" [Arabido	0.869	0.751	0.263	2e-10

TAIR|locus:2091040 AT3G14260 "AT3G14260" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 87/206 (42%), Positives = 112/206 (54%)

Query:     1 MAKVHP-LPIVEVAE-----YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYD 54
             M K+HP L      E     Y+T+++ESFTIWMKSLV   NGCTVF+  G I+YR+DNY+
Sbjct:    23 MVKIHPDLTTSGAGEETSSPYLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYN 82

Query:    55 NRGSNEVYLMDLRGRVLFTILR-KVWLFGGWKGYRGDNGD-----KLNKERPR---FQVS 105
             ++   EVYLMDL G VLFT+ R K  LF  W+GYR  +       KL   R +   FQV 
Sbjct:    83 SKSCREVYLMDLSGHVLFTLRRQKFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVP 142

Query:   106 KKGQITLL----SSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSXXXXXX 161
              K   +       S  N E  CYK+    S+  I D + G ++AE +RKQS N       
Sbjct:   143 NKDSSSSYRVNAGSCRNDEQYCYKMVTRGSSLAIED-NCGKLLAEVKRKQSINGLKLGDD 201

Query:   162 XXXXXXXEPQVDHSFIMALVTVYGLM 187
                    E QVDHSFI+ LV  + L+
Sbjct:   202 VLTMMV-ESQVDHSFIIGLVLAHSLI 226

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197036 AT1G53870 "AT1G53870" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 74/188 (39%), Positives = 107/188 (56%)

Query:    11 EVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRG-SNEVYLMDLRGR 69
             ++  Y+T+++E FTIWMKSLV    GCTVF+  G ++YR+DNYD++  SNEVY MDL G+
Sbjct:    32 KILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGK 91

Query:    70 VLFTIL-RKVWLFGGWKGYRGDNGD----KLNKERPRFQVSKKGQITLLSSSSNAET-SC 123
             +LFT+  +K+  F  W+GY          K+ K  PR + S   ++ + S   + +  SC
Sbjct:    92 ILFTLRQKKLGFFKSWEGYNSTGTRFRLRKIFKILPR-ESSSSYKVVMGSRIVDGDQQSC 150

Query:   124 YKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSXXXXXXXXXXXXXEPQVDHSFIMALVTV 183
             YK+    S F I D S G ++AE + K S  S             EPQ+DHS IM +V  
Sbjct:   151 YKIVNRGSVFAIKDGS-GRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLDHSLIMGIVIA 209

Query:   184 YGLMRHRL 191
             Y L + +L
Sbjct:   210 YKLTKCKL 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197046 AT1G53880 "AT1G53880" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 2.3e-27, P = 2.3e-27
 Identities = 73/189 (38%), Positives = 109/189 (57%)

Query:     1 MAKVHP---LPI-VEVAE-----YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRID 51
             M K+HP    P+   V E     Y+T+++ESFTIWM+SLV    GCTVF+  G ++YR+D
Sbjct:     1 MVKIHPDKAFPVDFSVGEGKTSPYLTTEKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVD 60

Query:    52 NYDNRGSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKG-- 108
             NY+++  +EVYLMDL G++LFT+  +K+ LF  WKGY    G +    R  F++  KG  
Sbjct:    61 NYNSKSCSEVYLMDLYGKILFTLRQKKLGLFKSWKGYNS-TGTRFQL-RKNFKILPKGSS 118

Query:   109 ---QITLLSSSSNAE-TSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSXXXXXXXXX 164
                ++ + S   + +  SCYK+   KS F I D S G ++AE ++KQS+           
Sbjct:   119 SSYKVVMGSRIVDGDHQSCYKIVKRKSVFTIEDGS-GRLLAEVKKKQSNIKSLDLGKDVL 177

Query:   165 XXXXEPQVD 173
                 EPQ++
Sbjct:   178 TMMVEPQLE 186

GO:0003743 "translation initiation factor activity" evidence=ISS;IBA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=IBA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

TAIR|locus:2814880 AT1G53900 "AT1G53900" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 2.3e-27, P = 2.3e-27
 Identities = 73/189 (38%), Positives = 109/189 (57%)

Query:     1 MAKVHP---LPI-VEVAE-----YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRID 51
             M K+HP    P+   V E     Y+T+++ESFTIWM+SLV    GCTVF+  G ++YR+D
Sbjct:     1 MVKIHPDKAFPVDFSVGEGKTSPYLTTEKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVD 60

Query:    52 NYDNRGSNEVYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKG-- 108
             NY+++  +EVYLMDL G++LFT+  +K+ LF  WKGY    G +    R  F++  KG  
Sbjct:    61 NYNSKSCSEVYLMDLYGKILFTLRQKKLGLFKSWKGYNS-TGTRFQL-RKNFKILPKGSS 118

Query:   109 ---QITLLSSSSNAE-TSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSXXXXXXXXX 164
                ++ + S   + +  SCYK+   KS F I D S G ++AE ++KQS+           
Sbjct:   119 SSYKVVMGSRIVDGDHQSCYKIVKRKSVFTIEDGS-GRLLAEVKKKQSNIKSLDLGKDVL 177

Query:   165 XXXXEPQVD 173
                 EPQ++
Sbjct:   178 TMMVEPQLE 186

GO:0003743 "translation initiation factor activity" evidence=ISS;IBA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=IBA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

TAIR|locus:2064179 AT2G38640 "AT2G38640" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 59/195 (30%), Positives = 89/195 (45%)

Query:     1 MAKVHP-LPIVEVAEYVTSKRES-FTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGS 58
             M KVHP  P         SK     T+W KSL+   +G TV+N NGE+V+R+DNY N   
Sbjct:     1 MTKVHPKFPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60

Query:    59 NEVYLMDLRGRVLFTILRKVWLFGG-WKGYRGDNG-DKLNKERPRFQV-SKKGQITLLSS 115
             + + LMD  G  L +I RK    G  W  Y G+   D +   R    + S +  +  +S+
Sbjct:    61 DNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETERDPIFTARKNVSIISNRKSLAWVSA 120

Query:   116 SSNAETSCYKLEA--GKSAFKIVDCSRGDV-VAEARRKQSSNSXXXXXXXXXXXXXEPQV 172
                 +T  Y++E   G+ + KI+D  R     AE +RK++                E ++
Sbjct:   121 K---KTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVESEM 177

Query:   173 DHSFIMALVTVYGLM 187
             +    MAL  +   M
Sbjct:   178 EPRVAMALTIILDQM 192

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016299 AT1G80120 "AT1G80120" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 55/180 (30%), Positives = 85/180 (47%)

Query:    14 EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNY---DNRGSNEVYLMDLRGRV 70
             E++  +  S T+   SL   G+G TV++  G +V+R+D+Y   + R ++EV LMD  GR 
Sbjct:    10 EFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRC 69

Query:    71 LFTILRK-VWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSNA--ETSC--YK 125
             L T+ RK   L   W+GY G+  D    ++P F V +   I   S +     +  C  Y 
Sbjct:    70 LLTLRRKRPSLRRRWEGYLGERSDG---QKPIFGVRRSSIIGRNSVTVEVYGDYQCSEYL 126

Query:   126 LEA--GKSAFKIVDCSRGDVVAEARRKQSSNSXXXXXXXXXXXXXEPQVDHSFIMALVTV 183
             +E   G     +V+      VAE RRK  +++             +P  D +F M LV V
Sbjct:   127 IEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLV 186

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 47/182 (25%), Positives = 88/182 (48%)

Query:     9 IVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNY--DNRGSNEVYLMDL 66
             +V+ A Y+  + +  T+   SL   G+G   ++  G+I++R+D+Y  D R ++E+ LMD 
Sbjct:    20 VVDKA-YLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDA 78

Query:    67 RGRVLFTILRK-VWLFGGWKGYRGDNGDKLNKERPRFQVSKK---GQITLLSSSSNAETS 122
              G+ L T+ RK   L   W+G+ G+  +    ++P F V +    G+ T+     +    
Sbjct:    79 TGKCLLTVKRKRPTLHQRWEGFLGERSEG---QKPIFSVRRSSIIGRCTMEVEVYDGTGE 135

Query:   123 CYKLEAGKSAFK-IVDCSRGDVVAEARRKQSSNSXXXXXXXXXXXXXEPQVDHSFIMALV 181
              Y ++   S    ++  ++   VAE +RK  +++             +P  D +F M LV
Sbjct:   136 EYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLV 195

Query:   182 TV 183
              V
Sbjct:   196 VV 197

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160427 AT5G41590 "AT5G41590" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 48/182 (26%), Positives = 75/182 (41%)

Query:    22 SFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILR--KVW 79
             + T+W KSL++   G TV + NG+++YR+DNY      E+ LMD  G  L  + R  K+ 
Sbjct:    38 TLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKIT 97

Query:    80 LFGGWKGYRGDN--GDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKS------ 131
             L   W  Y  ++  G+    + P + + K  ++ +LS+ S+     Y     K       
Sbjct:    98 LVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIK 157

Query:   132 ------AFKIVDCSRGDVVAEARRKQSSNSXXXXXXXXXXXXXEPQVDHSFIMALVTVYG 185
                   + KIV       V E +RK+                  P  D    MALV +  
Sbjct:   158 GSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMALVLLLD 217

Query:   186 LM 187
              M
Sbjct:   218 QM 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       178   0.00086  109 3  11 22  0.41    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.02u 0.09s 15.11t   Elapsed:  00:00:01
  Total cpu time:  15.02u 0.09s 15.11t   Elapsed:  00:00:01
  Start:  Fri May 10 08:12:52 2013   End:  Fri May 10 08:12:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUM1	LOR11_ARATH	No assigned EC number	0.4611	0.9685	0.8043	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030976 hypothetical protein (206 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
pfam04525	185	pfam04525, Tub_2, Tubby C 2	3e-45

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  147 bits (372), Expect = 3e-45
 Identities = 68/191 (35%), Positives = 100/191 (52%), Gaps = 21/191 (10%)

Query: 8   PIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLR 67
            +V  +EY++ + E  T+W KSLV  G+G TV++ NG +V+R+D Y    S+E  LMD  
Sbjct: 1   MVVVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYAFGLSDERVLMDSS 60

Query: 68  GRVLFTILRK-VWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSS--------- 117
           G  L TI RK + L   W+ YR   G+    + P F V +   + L +SSS         
Sbjct: 61  GNPLLTIRRKKLSLHDRWEVYR---GEGTEGKDPLFTVRRSSIVQLKTSSSVFSKRNSNV 117

Query: 118 -NAETSCYKLEA----GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQV 172
              +      +        + KI D     ++AE +R+ S   GV LG DV T+ V+P+V
Sbjct: 118 IVDDEKNCDFDIKGSFLDRSCKIYD-DSDKLIAEVKRQTS--KGVFLGKDVYTVTVKPEV 174

Query: 173 DHSFIMALVTV 183
           D++FIMALV V
Sbjct: 175 DYAFIMALVVV 185

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	100.0
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.56
COG4894	159	Uncharacterized conserved protein [Function unknow	98.36
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	97.51
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	97.5
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	96.55
TIGR03066	111	Gem_osc_para_1 Gemmata obscuriglobus paralogous fa	84.1

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=1.9e-42  Score=277.35  Aligned_cols=170  Identities=36%  Similarity=0.552  Sum_probs=104.2

Q ss_pred             CCCccccccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEe-cCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEE
Q 042437            9 IVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDN-YDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKG   86 (191)
Q Consensus         9 ~~~~~~~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g-~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v   86 (191)
                      +...++||+++|++|+||+|.+++++|+|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.+ ++++|++
T Consensus         2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i   81 (187)
T PF04525_consen    2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI   81 (187)
T ss_dssp             -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred             cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence            35667999999999999999999999999999999999999999 899999999999999999999999999 9999999


Q ss_pred             EecCCCCCCCCCCceEEEEeceeE------EEe-cCCC-----CCCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeec
Q 042437           87 YRGDNGDKLNKERPRFQVSKKGQI------TLL-SSSS-----NAETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQS  152 (191)
Q Consensus        87 ~~~~~g~~~~~~~~~f~vkk~~~~------~~~-~~~~-----~~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~  152 (191)
                      |+   |++.+..+++|+||+++.+      .+| .++.     ..+.++|+| | |++++|+|++. +|++||+|+||+.
T Consensus        82 ~~---~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~-~g~~VA~i~rk~~  157 (187)
T PF04525_consen   82 YR---GGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDS-GGRVVAEISRKYS  157 (187)
T ss_dssp             EE---TT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEEC-C--EEEEEEE---
T ss_pred             EE---CCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEc-CCCEEEEEecccc
Confidence            99   4433345689999999422      123 3232     357789999 9 99999999974 6899999998888


Q ss_pred             cCcceeeeeeeEEEEEeCCCCHHHHHHHHHH
Q 042437          153 SNSGVLLGDDVLTLVVEPQVDHSFIMALVTV  183 (191)
Q Consensus       153 ~~~~~~~~~dtY~l~V~pgvD~ali~alvi~  183 (191)
                      . +..+.|+|+|.|+|+||+|++|++|||||
T Consensus       158 ~-k~~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  158 S-KKWFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             --------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             e-eeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence            5 78888999999999999999999999987

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.4e-37  Score=232.54  Aligned_cols=152  Identities=19%  Similarity=0.274  Sum_probs=141.8

Q ss_pred             ceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEEEecCCCCCCCCC
Q 042437           20 RESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKGYRGDNGDKLNKE   98 (191)
Q Consensus        20 ~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v~~~~~g~~~~~~   98 (191)
                      ..+|.|+||++++ ||+|.|+|.+|+.+|+|+|+.+++++.+.+.|++|.+|.+|++|++ ++|+|+|-.   |+    +
T Consensus         5 ~~tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d---~~----g   76 (159)
T COG4894           5 MITLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISD---GG----G   76 (159)
T ss_pred             hHhHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEc---CC----C
Confidence            4678999999999 5999999999999999999999999999999999999999999999 999999988   33    3


Q ss_pred             CceEEEEeceeEEEecCCCCCCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeeccCcceeeeeeeEEEEEeCCCCHHH
Q 042437           99 RPRFQVSKKGQITLLSSSSNAETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSF  176 (191)
Q Consensus        99 ~~~f~vkk~~~~~~~~~~~~~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~~~~~~~~~~dtY~l~V~pgvD~al  176 (191)
                       ..|.++|+++|  ++.++..++.+|++ | +|+.+|++.++  ++++|+|+|||+.      |+|||.|+|+|+.|.++
T Consensus        77 -~~~~vrKK~tf--~Rdk~e~d~~~~eihGNi~d~efkl~dg--~~~~aeVsKkwf~------~rdTY~l~vapde~a~l  145 (159)
T COG4894          77 -TVCEVRKKVTF--SRDKFEIDGLNWEIHGNIWDDEFKLTDG--ENVRAEVSKKWFS------WRDTYHLQVAPDEDALL  145 (159)
T ss_pred             -CEEEEEEEEEE--EeeeEEEcCCCeEEecceeceEEEEecC--CceehhheeeeEe------ccceEEEEEcCchhhHH
Confidence             49999999998  78888888888999 9 99999999986  7799999999998      99999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 042437          177 IMALVTVYGLMRHR  190 (191)
Q Consensus       177 i~alvi~lD~i~~~  190 (191)
                      |+++|||||++.++
T Consensus       146 ii~i~VaLD~v~~~  159 (159)
T COG4894         146 IIAIAVALDMVLYN  159 (159)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999763

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.56  E-value=5.2e-13  Score=109.21  Aligned_cols=164  Identities=15%  Similarity=0.156  Sum_probs=121.8

Q ss_pred             ccccCcceEEEEEEeeeeE-------eCCCeEEEeCCCCEEEEEEecCC---------CCCceEEEEcCCCCeEEEEEee
Q 042437           14 EYVTSKRESFTIWMKSLVM-------QGNGCTVFNENGEIVYRIDNYDN---------RGSNEVYLMDLRGRVLFTILRK   77 (191)
Q Consensus        14 ~~~~~~~~~l~vk~k~~s~-------~~~~f~I~D~~G~~vf~V~g~~~---------s~~~k~~l~D~~G~~L~~i~~k   77 (191)
                      ++-..-+. +.|+|+.-.+       ..+.|.|+|.+|+.+|.+....-         ...-++.|+|+.|++++++++.
T Consensus        16 e~L~~~~~-l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp   94 (221)
T PF03803_consen   16 EYLAGLDQ-LLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERP   94 (221)
T ss_pred             HHHhCCCE-EEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcC
Confidence            45444444 4577777542       24799999999999999865521         1244678999999999999987


Q ss_pred             ee-ec------ceeEEEecCCCCCCCCCCceEEEEeceeEEEecCCCC----CCceeEEE-e--c-----CCceeEEEeC
Q 042437           78 VW-LF------GGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSN----AETSCYKL-E--A-----GKSAFKIVDC  138 (191)
Q Consensus        78 ~~-~~------~~~~v~~~~~g~~~~~~~~~f~vkk~~~~~~~~~~~~----~~~~~~~v-G--~-----~~~~~~I~~~  138 (191)
                      .- ..      .+.+|+.+       .++++.+|++++++  +.+++.    .+..-+.| |  +     .+.+|.|++.
T Consensus        95 ~~c~~C~~~~~~~~~V~~p-------~g~~iG~I~q~~~~--~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~~  165 (221)
T PF03803_consen   95 FKCCSCCPCCLQEMEVESP-------PGNLIGSIRQPFSC--CRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKDP  165 (221)
T ss_pred             CcceecccccceeEEEecC-------CCcEEEEEEEcCcc--cceEEEEEECCCceEEEEeCCcceeccccceeeeeecc
Confidence            53 33      56666553       46799999998865  444432    24556778 7  3     5789999987


Q ss_pred             CCCeEEEEEEeeeccC-cceeeeeeeEEEEEeCCCCH---HHHHHHHHHHHhhh
Q 042437          139 SRGDVVAEARRKQSSN-SGVLLGDDVLTLVVEPQVDH---SFIMALVTVYGLMR  188 (191)
Q Consensus       139 ~~g~~VA~V~rk~~~~-~~~~~~~dtY~l~V~pgvD~---ali~alvi~lD~i~  188 (191)
                       +|+.||+|+|+|... ...+...|.|.|+..+..|.   |+++|.++.||.+.
T Consensus       166 -~~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~  218 (221)
T PF03803_consen  166 -NGQEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMY  218 (221)
T ss_pred             -cCcEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhh
Confidence             579999999999853 33455789999999999876   69999999999875

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=9.3e-07  Score=67.58  Aligned_cols=70  Identities=16%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             cccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEE
Q 042437           15 YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKG   86 (191)
Q Consensus        15 ~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v   86 (191)
                      |=...+.++.|.-+.++. ||.|+|+|+.|.+++.++.+.+++..+..|-|++|+ ++.+++|.. +++.|++
T Consensus        24 ~d~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~   94 (159)
T COG4894          24 YDRDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEI   94 (159)
T ss_pred             ECCCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEE
Confidence            345779999999988998 689999999999999999999999999999999999 888888887 8999987

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=97.51  E-value=0.0026  Score=54.45  Aligned_cols=149  Identities=14%  Similarity=0.081  Sum_probs=94.9

Q ss_pred             CCCeEEEeCCCCEEEEEEecC--C-------CCCceEEEEcCCCCeEEEEEeeee-ecc------eeEEEecCCCCCCCC
Q 042437           34 GNGCTVFNENGEIVYRIDNYD--N-------RGSNEVYLMDLRGRVLFTILRKVW-LFG------GWKGYRGDNGDKLNK   97 (191)
Q Consensus        34 ~~~f~I~D~~G~~vf~V~g~~--~-------s~~~k~~l~D~~G~~L~~i~~k~~-~~~------~~~v~~~~~g~~~~~   97 (191)
                      .+.|.|.|.+|+.+|.+-...  +       ...-...++|.-|++++++++... ...      ..++-.     +...
T Consensus        98 ~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v-----~~p~  172 (292)
T KOG0621|consen   98 ANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEI-----QSPP  172 (292)
T ss_pred             CcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEE-----EcCC
Confidence            388999999999999653221  1       235678899999999999999875 332      111111     1112


Q ss_pred             CCceEEEEecee-----EEEecCCCC----CCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeeccC-cceeeeeeeEE
Q 042437           98 ERPRFQVSKKGQ-----ITLLSSSSN----AETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQSSN-SGVLLGDDVLT  165 (191)
Q Consensus        98 ~~~~f~vkk~~~-----~~~~~~~~~----~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~~~-~~~~~~~dtY~  165 (191)
                      ...+-+|...+.     +.+.....+    .+++.... + +-+..+.+...++|..|++|.|+|... .+.+-+.|+|.
T Consensus       173 ~~~lG~v~q~~~~~~~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f~  252 (292)
T KOG0621|consen  173 MGLLGKVLQTWGCVNPNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDADTFV  252 (292)
T ss_pred             CceEEEEEEeeccccceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheeccceee
Confidence            334444444331     111221111    24454445 5 667777777665789999999999853 56667889999


Q ss_pred             EEEeCCCCH---HHHHHHHHHHHhh
Q 042437          166 LVVEPQVDH---SFIMALVTVYGLM  187 (191)
Q Consensus       166 l~V~pgvD~---ali~alvi~lD~i  187 (191)
                      |...-..|.   ++++|.+.-||.+
T Consensus       253 v~FPldLdvk~kavllga~flID~~  277 (292)
T KOG0621|consen  253 VHFPLDLDVKLKALLLGSTFLIDYM  277 (292)
T ss_pred             EecCCcCCHHHHhhhhhheeeEEEE
Confidence            998877775   5777777777644

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=97.50  E-value=0.00038  Score=55.59  Aligned_cols=71  Identities=13%  Similarity=0.096  Sum_probs=43.2

Q ss_pred             cCcceEEEEEE-eeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCC----eEEEEEeee-e-ecceeEEEe
Q 042437           17 TSKRESFTIWM-KSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGR----VLFTILRKV-W-LFGGWKGYR   88 (191)
Q Consensus        17 ~~~~~~l~vk~-k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~----~L~~i~~k~-~-~~~~~~v~~   88 (191)
                      .+....|+|+. +.+++. +...++|.+|+++++++.+.+++.++..++++++.    ++++|+++. + .++...+|.
T Consensus        35 ~~G~~vf~V~g~~~~s~~-~~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~  112 (187)
T PF04525_consen   35 ENGNVVFRVDGGKFFSIG-KKRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFL  112 (187)
T ss_dssp             TTS-EEEEEE--SCTTBT-TEEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEE
T ss_pred             CCCCEEEEEEEecccCCC-CEEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEE
Confidence            35678999999 788884 79999999999999999999999999999999998    599999993 3 566666666

; PDB: 1ZXU_A 2Q4M_A.

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=96.55  E-value=0.0073  Score=49.17  Aligned_cols=82  Identities=17%  Similarity=0.089  Sum_probs=57.0

Q ss_pred             ceEEEEEEeeeeEeC------CCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-----ecceeEEEe
Q 042437           20 RESFTIWMKSLVMQG------NGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-----LFGGWKGYR   88 (191)
Q Consensus        20 ~~~l~vk~k~~s~~~------~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-----~~~~~~v~~   88 (191)
                      ...++++ |.+.+..      ...+|.+.+|+.+.+|......++.++.|+|++|++++.|+....     ..-.|+|+.
T Consensus        86 ~~vl~i~-Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~  164 (221)
T PF03803_consen   86 REVLTIE-RPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKD  164 (221)
T ss_pred             CEEEEEE-cCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceeccccceeeeeec
Confidence            4456665 4455432      567788888999988888766678888899999988888877643     233455554


Q ss_pred             cCCCCCCCCCCceEEEEecee
Q 042437           89 GDNGDKLNKERPRFQVSKKGQ  109 (191)
Q Consensus        89 ~~~g~~~~~~~~~f~vkk~~~  109 (191)
                      .       +++.+.+|+|+|.
T Consensus       165 ~-------~~~~vg~I~k~w~  178 (221)
T PF03803_consen  165 P-------NGQEVGSITKKWS  178 (221)
T ss_pred             c-------cCcEEEEEEEecC
Confidence            2       2468888888874

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066

Probab=84.10  E-value=3.8  Score=30.26  Aligned_cols=73  Identities=12%  Similarity=0.035  Sum_probs=41.1

Q ss_pred             ccccCCCCCCcc--ccccCcceEEEEEEeee-eEeCCCeEEEeCCCCEEEEEEe--cC--------CCCCceEEEEcCCC
Q 042437            2 AKVHPLPIVEVA--EYVTSKRESFTIWMKSL-VMQGNGCTVFNENGEIVYRIDN--YD--------NRGSNEVYLMDLRG   68 (191)
Q Consensus         2 ~~~~~~~~~~~~--~~~~~~~~~l~vk~k~~-s~~~~~f~I~D~~G~~vf~V~g--~~--------~s~~~k~~l~D~~G   68 (191)
                      ++||++....++  +|-......+++..+.- .--.+.|++.+.  .+-+++..  .-        .--.+++.+.|++|
T Consensus        25 GkW~~~~~~~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~--kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg  102 (111)
T TIGR03066        25 GKWETSKTKDDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGN--KLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDG  102 (111)
T ss_pred             EEEEEeeeCCceEEEEcCCCeEEEecCCCCcEeccCceEEEECC--EEEEEEcCCCccccceEEEEEecCCeEEEEcCCC
Confidence            589996555555  67777777777766542 111134443322  22222111  11        11367889999999


Q ss_pred             CeEEEEEe
Q 042437           69 RVLFTILR   76 (191)
Q Consensus        69 ~~L~~i~~   76 (191)
                      +++...|-
T Consensus       103 ~~~~~~rv  110 (111)
T TIGR03066       103 KKDTLKRV  110 (111)
T ss_pred             CEeEEEEc
Confidence            98876553

This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	2e-45

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  148 bits (374), Expect = 2e-45
 Identities = 34/192 (17%), Positives = 76/192 (39%), Gaps = 8/192 (4%)

Query: 5   HPLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLM 64
               +V   +Y         I  K + +      + + NG +++++        ++  L+
Sbjct: 22  QAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLL 81

Query: 65  DLRGRVLFTILR-KVWLFGGWKGYRGDNGDKLNKE----RPRFQVSKKGQITLLSSSSNA 119
           D  G  + T+    V +   W+ +RG + D+ +      R      K      L  + + 
Sbjct: 82  DGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDE 141

Query: 120 ETSCYKLE--AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFI 177
           +   ++++    + +  +       +VA+  RK  +   V LG D  ++ V P VD++FI
Sbjct: 142 KRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKH-TVQSVFLGKDNFSVTVYPNVDYAFI 200

Query: 178 MALVTVYGLMRH 189
            +LV +   +  
Sbjct: 201 ASLVVILDDVNR 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	98.08

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=3.5e-40  Score=268.61  Aligned_cols=172  Identities=18%  Similarity=0.341  Sum_probs=131.4

Q ss_pred             ccccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEEEecCCC
Q 042437           14 EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKGYRGDNG   92 (191)
Q Consensus        14 ~~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v~~~~~g   92 (191)
                      +||++++++|+||||.+++++++|+|+|++|+++|+|+++.++++.++.|+|++|++|++|++|.+ ++++|++|+   |
T Consensus        31 ~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~---~  107 (217)
T 1zxu_A           31 KYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFR---G  107 (217)
T ss_dssp             GGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC------CEEEEEE---T
T ss_pred             cccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEccccccCcEEEEEc---C
Confidence            899999999999999999998899999999999999999999999999999999999999999999 999999999   4


Q ss_pred             CCCCCCCceEEEEeceeEEEecCCC--------CCCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeeccCcceeeeee
Q 042437           93 DKLNKERPRFQVSKKGQITLLSSSS--------NAETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDD  162 (191)
Q Consensus        93 ~~~~~~~~~f~vkk~~~~~~~~~~~--------~~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~~~~~~~~~~d  162 (191)
                      +..+.++++|+||++..++ +++++        ..+..+|+| | |++++|+|+++++|++||+|+|++.. .++++++|
T Consensus       108 ~~~~~~~~i~~vrk~~~~~-~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~-~~~~~~~D  185 (217)
T 1zxu_A          108 GSTDQRDLLYTVKRSSMLQ-LKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTV-QSVFLGKD  185 (217)
T ss_dssp             TCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC---------CBC
T ss_pred             CCCCCCcEEEEEEEecccc-CCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeec-cccccCCc
Confidence            4333346899999983222 22222        224678999 9 99999999997337999999999754 88889999


Q ss_pred             eEEEEEeCCCCHHHHHHHHHHHHhhhcc
Q 042437          163 VLTLVVEPQVDHSFIMALVTVYGLMRHR  190 (191)
Q Consensus       163 tY~l~V~pgvD~ali~alvi~lD~i~~~  190 (191)
                      +|.|+|.|++|.+|+||+|++||++.++
T Consensus       186 ~y~l~V~p~~D~aliialvv~iD~~~~~  213 (217)
T 1zxu_A          186 NFSVTVYPNVDYAFIASLVVILDDVNRE  213 (217)
T ss_dssp             SEEEEECTTSBHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999764

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=98.08  E-value=1.7e-05  Score=63.68  Aligned_cols=87  Identities=13%  Similarity=0.149  Sum_probs=61.1

Q ss_pred             cCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCC----eEEEEEeee-e-ecceeEEEecC
Q 042437           17 TSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGR----VLFTILRKV-W-LFGGWKGYRGD   90 (191)
Q Consensus        17 ~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~----~L~~i~~k~-~-~~~~~~v~~~~   90 (191)
                      .+....|+|..+.++++ +.+.|+|.+|++++++..+.+++..+..++++.+.    +|++|+++. + +++.|+|+.+ 
T Consensus        59 ~~G~~vf~V~~~~~~~~-~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~-  136 (217)
T 1zxu_A           59 VNGNLLFKVKEPVFGLH-DKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG-  136 (217)
T ss_dssp             TTSCEEEEEECSSTTCC-SEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEET-
T ss_pred             CCCCEEEEEEccccCCC-CEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEEC-
Confidence            45688999999877774 79999999999999999999999999999998875    799999984 5 8999999983 


Q ss_pred             CCCCCCCCCceEEEEec
Q 042437           91 NGDKLNKERPRFQVSKK  107 (191)
Q Consensus        91 ~g~~~~~~~~~f~vkk~  107 (191)
                        +...++...++|+-.
T Consensus       137 --~~~~~~~~~~~I~G~  151 (217)
T 1zxu_A          137 --HNKDEKRCDFRVKGS  151 (217)
T ss_dssp             --TCCC-CCCSEEEESC
T ss_pred             --CCCCCCceEEEEEEe
Confidence              222233466777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	8e-39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	98.01