Citrus Sinensis ID: 042609
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | 2.2.26 [Sep-21-2011] | |||||||
| P0C896 | 576 | Pentatricopeptide repeat- | yes | no | 0.998 | 0.935 | 0.518 | 1e-155 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.588 | 0.421 | 0.267 | 8e-31 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.605 | 0.447 | 0.279 | 2e-30 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.644 | 0.614 | 0.278 | 3e-30 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.587 | 0.427 | 0.280 | 2e-28 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.648 | 0.468 | 0.274 | 3e-28 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.464 | 0.276 | 0.261 | 4e-28 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.590 | 0.529 | 0.252 | 7e-28 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.596 | 0.407 | 0.269 | 8e-28 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.577 | 0.340 | 0.279 | 2e-27 |
| >sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 299/577 (51%), Positives = 379/577 (65%), Gaps = 38/577 (6%)
Query: 1 MWRSIAAGSRLVARNFGVA------TEKVHCSQTLSLNISRSLSKPSLYRSSRFLS---- 50
M RS S+ +RN V T+ H +LS S + R+ RF S
Sbjct: 1 MLRSFLCRSQNASRNLAVTRISKKKTQTTHSLTSLSRFSYLESSGNASVRNIRFFSTSPP 60
Query: 51 --ESPAANPKDESSFSPETDFS-------------SRSFGENEYAQMDPSADA-VESKEE 94
E+P + P DE S + + S +G + D+ + + E
Sbjct: 61 TEENPVSLPADEIPISSAAELTLEESVASALGFSESGDYGGTSVEAVGEDGDSEIVAIEN 120
Query: 95 EAYEIDGDKLENVLSLLQSSVDGYLESSLDSFELDLHEDFVLKVLETPLVLGENLVCFFK 154
E Y+ D +KLE+VLSLL+S + LE L++ +DLH DFV++V E+P + G+NL+ F K
Sbjct: 121 EVYQFDDEKLESVLSLLRSDEES-LEFGLNALNVDLHLDFVVRVFESPGISGKNLIRFLK 179
Query: 155 W--------VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEK-GVLTVEILNELIA 205
W VT+ +V++LL AI S + + Y LWD+VKEIGEKE GVL +EILNELIA
Sbjct: 180 WATQNEEITVTTSLVESLLVAIASDTRRMDAYGLWDLVKEIGEKESCGVLNLEILNELIA 239
Query: 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLP 265
LF KLGK KAAF+VF+K ++G N +TYY T+EAL +R DWA SVCEKM+++G L
Sbjct: 240 LFGKLGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLS 299
Query: 266 DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325
+ E++G II+WFCK GKA+EA+ VY LA+ K+ P VA LI++LC+ D T+ A +M
Sbjct: 300 EGEQMGNIITWFCKEGKAEEAYSVYELAKTKEKSLPPRFVATLITALCKNDGTITFAQEM 359
Query: 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK 385
L D SGEAR+ IKPFS VI SLCRM++V AK LL MIS+GP PGNAVFN V+ A SK
Sbjct: 360 LGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSK 419
Query: 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445
GD+ A E+LKLM SRGLKPDVYTYT ++SGYA GG M+EA EIL EAKK H +LSPVT
Sbjct: 420 TGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVT 479
Query: 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505
YH LIRGYCK+EE+D ALKLLNEM GVQPN DEYNKLIQS CLKALDW AE L E+M
Sbjct: 480 YHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEM 539
Query: 506 RLKGLHLNGITRALIRAVKELEEDA--IENGEALVEA 540
+ KGLHLN I++ LIRAVKE+E +A E+G L EA
Sbjct: 540 KQKGLHLNAISQGLIRAVKEMESEAKVTEDGNLLAEA 576
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 153/321 (47%), Gaps = 3/321 (0%)
Query: 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCE 256
V N LI + + + A + YG V +++T+ ++ D A + E
Sbjct: 189 VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIRE 248
Query: 257 KMIETGSLPDSEKVGKIISWFCKGGKAKEA-HVVYTLAREKKMYPPQSVVAFLISSLCQE 315
+M+E G + V I+ FCK G+ ++A + + ++ + +P Q L++ LC+
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308
Query: 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV 375
VK A++++D E + ++SVI LC++ +V A +L +MI+ P
Sbjct: 309 GH-VKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVT 367
Query: 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435
+N++IS K + A E+ +++ S+G+ PDV T+ L+ G A E+ E +
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 436 KNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDW 495
TY+ LI C + D AL +L +M+ G +V YN LI C KA
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC-KANKT 486
Query: 496 RTAEKLLEDMRLKGLHLNGIT 516
R AE++ ++M + G+ N +T
Sbjct: 487 REAEEIFDEMEVHGVSRNSVT 507
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 161/344 (46%), Gaps = 17/344 (4%)
Query: 207 FSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD 266
F + + +A + +GCV N Y I +LS+ + A + E+M G +PD
Sbjct: 227 FCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPD 286
Query: 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDML 326
+E +I CK + EA + + P +L++ LC+ +D
Sbjct: 287 AETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-----VDAA 341
Query: 327 DDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI-SEGPPPGNAVFNSVISAYSK 385
D K I F+++I + AK +LS M+ S G P +NS+I Y K
Sbjct: 342 KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401
Query: 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445
G + A+E+L MR++G KP+VY+YT L+ G+ G+++EA +LNE + + + V
Sbjct: 402 EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG 461
Query: 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505
++ LI +CK A+++ EM G +P+V +N LI LC + + + A LL DM
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC-EVDEIKHALWLLRDM 520
Query: 506 RLKGLHLNGIT----------RALIRAVKELEEDAIENGEALVE 539
+G+ N +T R I+ ++L + + G L E
Sbjct: 521 ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE 564
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 179/398 (44%), Gaps = 50/398 (12%)
Query: 176 EVYALWDIVK---EIGEKEKGV-----LT-------VEILNELIALFSKLGKGKAAFEVF 220
+VY+ ++K E GE EK LT V I LI K G+ + A ++F
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 221 NKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG 280
+ G G VAN+ TY I L + + + + EKM E G P+ +++ CK
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281
Query: 281 GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE---DETVKLALDM------------ 325
G+ K+A V+ RE+ + LI LC+E +E K+ M
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341
Query: 326 ---LDDFSG------------EARKYAIKP----FSSVIRSLCRMKDVHGAKTLLSKMIS 366
+D F G + + + P ++ ++ CR D GA ++ +M
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401
Query: 367 EGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEE 426
G P + +I ++++ +M A+++ M GL PDV+TY+ L+ G+ GQM E
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNE 461
Query: 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486
A + + + + V Y+T+I GYCK ALKLL EM++ + PNV Y +I+
Sbjct: 462 ASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIE 521
Query: 487 SLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVK 524
LC K + AE+L+E M G+ + +LI K
Sbjct: 522 VLC-KERKSKEAERLVEKMIDSGIDPSTSILSLISRAK 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 11/328 (3%)
Query: 194 VLTVEILNELIALFSK-LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAW 252
VL+V+ N + SK K A VF +F + G N +Y I + + A
Sbjct: 207 VLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 266
Query: 253 SVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312
+ M G PD +++ +C+ G+ + + + + K + P + +I L
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326
Query: 313 CQEDETVKLALDMLDDFSGEARKYAIKP----FSSVIRSLCRMKDVHGAKTLLSKMISEG 368
C+ KLA + + FS R+ I P ++++I C+ D+ A +M S
Sbjct: 327 CR---ICKLA-EAEEAFSEMIRQ-GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381
Query: 369 PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428
P + ++IS + + GDM A ++ M +GL+PD T+T L++GY G M++A
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441
Query: 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSL 488
+ N + + VTY TLI G CK + D A +LL+EM +G+QPN+ YN ++ L
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501
Query: 489 CLKALDWRTAEKLLEDMRLKGLHLNGIT 516
C K+ + A KL+ + GL+ + +T
Sbjct: 502 C-KSGNIEEAVKLVGEFEAAGLNADTVT 528
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 173/372 (46%), Gaps = 22/372 (5%)
Query: 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKE--KGVLTVEILNELIALFSKLGKGKA 215
+ V+DA +++ K+ + ++ KE+ E + V T IL I F G
Sbjct: 173 NAVLDATIRS------KRNISFAENVFKEMLESQVSPNVFTYNIL---IRGFCFAGNIDV 223
Query: 216 AFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275
A +F+K GC+ N TY I+ + + D + + M G P+ +I+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK 335
C+ G+ KE V T + + LI C+E AL M +
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEG-NFHQALVMHAEMLRHGLT 342
Query: 336 YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEM 395
++ ++S+I S+C+ +++ A L +M G P + +++ +S+ G M A +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP--VTYHTLIRGY 453
L+ M G P V TY L++G+ G+ME+A +L + K+ LSP V+Y T++ G+
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE--KGLSPDVVSYSTVLSGF 460
Query: 454 CKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAE--KLLEDMRLKGLH 511
C+ + D AL++ EM + G++P+ Y+ LIQ C + RT E L E+M GL
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ---RRTKEACDLYEEMLRVGLP 517
Query: 512 LNGIT-RALIRA 522
+ T ALI A
Sbjct: 518 PDEFTYTALINA 529
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 1/252 (0%)
Query: 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM 298
+E L +R + A ++ +++++ G P+ +I CKG K EA +++ + +
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGL 398
Query: 299 YPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAK 358
P + LI C+ + + AL L + K ++ P++S+I C+ D+ A+
Sbjct: 399 RPNDVTYSILIDMFCRRGK-LDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 359 TLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGY 418
+++MI++ P + S++ Y G + A+ + M +G+ P +YT+T L+SG
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517
Query: 419 ANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478
G + +A ++ NE + + + + VTY+ +I GYC+ + A + L EM + G+ P+
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT 577
Query: 479 DEYNKLIQSLCL 490
Y LI LCL
Sbjct: 578 YSYRPLIHGLCL 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 150/321 (46%), Gaps = 2/321 (0%)
Query: 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMI 259
LN +I F + K A+ V K G + T+ I+ L A + ++M+
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185
Query: 260 ETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319
E G PD I++ C+ G A + E+ + + +I SLC+ D +
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR-DGCI 244
Query: 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSV 379
A+ + + + K ++ ++S++R LC+ + LL M+S P FN +
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304
Query: 380 ISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439
+ + K G + A E+ K M +RG+ P++ TY LM GY ++ EA +L+ +N
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364
Query: 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAE 499
VT+ +LI+GYC ++ D +K+ + G+ N Y+ L+Q C ++ + AE
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC-QSGKIKLAE 423
Query: 500 KLLEDMRLKGLHLNGITRALI 520
+L ++M G+ + +T ++
Sbjct: 424 ELFQEMVSHGVLPDVMTYGIL 444
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 5/327 (1%)
Query: 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFN 221
+++L CSS KE ++ G E V+T +L + + K G+ A ++F+
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRSDG-VEPDVVTYSLLMDYLC---KNGRCMEARKIFD 325
Query: 222 KFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281
G TY ++ + + + + M+ G PD +I + K G
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQG 385
Query: 282 KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPF 341
K +A +V++ R++ + P +I LC+ V+ A+ + E +
Sbjct: 386 KVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR-VEDAMLYFEQMIDEGLSPGNIVY 444
Query: 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401
+S+I LC A+ L+ +M+ G FNS+I ++ K G + + ++ +LM
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504
Query: 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDC 461
G+KP+V TY L++GY G+M+EA ++L+ + + VTY TLI GYCK+ +
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564
Query: 462 ALKLLNEMKDVGVQPNVDEYNKLIQSL 488
AL L EM+ GV P++ YN ++Q L
Sbjct: 565 ALVLFKEMESSGVSPDIITYNIILQGL 591
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 3/315 (0%)
Query: 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260
N+++ + KLG + A + +K + G + TY I +RK D A+ V +M
Sbjct: 222 NKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL 281
Query: 261 TGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320
G + +I C + EA ++ ++ + +P LI SLC + +
Sbjct: 282 KGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE 341
Query: 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380
AL+++ + K I ++ +I SLC A+ LL +M+ +G P +N++I
Sbjct: 342 -ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR 440
+ Y K G + A+++++LM SR L P+ TY L+ GY + +A +LN+ +
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVL 459
Query: 441 LSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500
VTY++LI G C+ FD A +LL+ M D G+ P+ Y +I SLC K+ A
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC-KSKRVEEACD 518
Query: 501 LLEDMRLKGLHLNGI 515
L + + KG++ N +
Sbjct: 519 LFDSLEQKGVNPNVV 533
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | ||||||
| 255547442 | 584 | pentatricopeptide repeat-containing prot | 0.983 | 0.909 | 0.593 | 0.0 | |
| 224061145 | 476 | predicted protein [Populus trichocarpa] | 0.818 | 0.928 | 0.687 | 0.0 | |
| 147784775 | 549 | hypothetical protein VITISV_000279 [Viti | 0.962 | 0.947 | 0.583 | 1e-172 | |
| 356556344 | 538 | PREDICTED: pentatricopeptide repeat-cont | 0.961 | 0.964 | 0.563 | 1e-164 | |
| 449442429 | 479 | PREDICTED: pentatricopeptide repeat-cont | 0.801 | 0.903 | 0.631 | 1e-162 | |
| 356547390 | 539 | PREDICTED: pentatricopeptide repeat-cont | 0.929 | 0.931 | 0.566 | 1e-162 | |
| 334185040 | 576 | pentatricopeptide repeat-containing prot | 0.998 | 0.935 | 0.518 | 1e-153 | |
| 6957728 | 1077 | hypothetical protein [Arabidopsis thalia | 0.983 | 0.493 | 0.520 | 1e-152 | |
| 297828726 | 1091 | predicted protein [Arabidopsis lyrata su | 0.912 | 0.451 | 0.537 | 1e-149 | |
| 359495886 | 509 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.887 | 0.941 | 0.482 | 1e-122 |
| >gi|255547442|ref|XP_002514778.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545829|gb|EEF47332.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/578 (59%), Positives = 412/578 (71%), Gaps = 47/578 (8%)
Query: 1 MWRSIAAGSRLVARNFGVATEK------------VHCSQTLSL--NISRSLSKPSLYRSS 46
MWRSIA SR A + AT V C Q L N+S + + + SS
Sbjct: 1 MWRSIAIKSRQAAHSLSAATSYNKVSSASHFSNWVPCQQNLRFLSNLSVNTNDTEIDHSS 60
Query: 47 RFLSESPAANPKDES--------SFSPETDFSSRSF---GENEYAQMDPSADAVESKEEE 95
+++ + DE +FSP+ D + S EN MD EE
Sbjct: 61 HGSAQN-NYDGDDEGKVTDTHLHNFSPQADINEVSHHYSSENGDTHMDNFVQRSPDLAEE 119
Query: 96 A-------------YEIDGDKLENVLSLLQSSVDGYLESSLDSFELDLHEDFVLKVLETP 142
A Y ID DKLENVLSLLQSS D LESSLD+ +L LHEDF++KVLETP
Sbjct: 120 ANTQIHGEVEGHVDYVIDADKLENVLSLLQSSTDASLESSLDNMDLHLHEDFIVKVLETP 179
Query: 143 LVLGENLVCFFKW--------VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGV 194
L++G+NL+ FF W VT+ +V L++AICS + KK+ YALWD+VK+IGE+E V
Sbjct: 180 LIVGDNLIKFFNWAIKQPDINVTTRLVHPLVRAICSELRKKDAYALWDLVKDIGEEENTV 239
Query: 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSV 254
L V++LN+LIALFSKLGKGKAAFEVFNKFGD+GCV + ETY++TIEAL RR IFDWA SV
Sbjct: 240 LNVDLLNQLIALFSKLGKGKAAFEVFNKFGDFGCVPDSETYHYTIEALCRRSIFDWASSV 299
Query: 255 CEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ 314
EKM+ +LPD+EK+GKII WFCKG KA +A++VY LA+EK YPPQ V FLI LCQ
Sbjct: 300 REKMLRAEALPDTEKIGKIICWFCKGDKANDAYLVYLLAKEKNKYPPQPSVNFLIGLLCQ 359
Query: 315 EDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNA 374
++ETVKLAL+MLD FSG RKYAIKPFSSVIR+LCR+KD+ GAK LLSKM+ EGPPPGNA
Sbjct: 360 KNETVKLALEMLDAFSGPKRKYAIKPFSSVIRALCRIKDLDGAKMLLSKMVDEGPPPGNA 419
Query: 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434
VFNS+I+ YSK GDM A++M +LM RGLKPD++TY +MSGYA+GGQMEEAC++L+EA
Sbjct: 420 VFNSIINGYSKCGDMKEAIKMKQLMVRRGLKPDLFTYAVIMSGYASGGQMEEACKVLSEA 479
Query: 435 KKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALD 494
KK HS+LSPV YHT+IRGYCKLE+FD AL LL EMK GVQ N DEYNKLIQSLCLKALD
Sbjct: 480 KKKHSKLSPVMYHTVIRGYCKLEQFDKALDLLAEMKTFGVQANADEYNKLIQSLCLKALD 539
Query: 495 WRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDAIE 532
W AEKLLE M+ GLHLNGITR LIRAVKELE++ IE
Sbjct: 540 WERAEKLLEKMKEDGLHLNGITRGLIRAVKELEDEGIE 577
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061145|ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/451 (68%), Positives = 370/451 (82%), Gaps = 9/451 (1%)
Query: 90 ESKEEEAYEIDGDKLENVLSLLQSSVDGYLESSLDSFELDLHEDFVLKVLETPLVLGENL 149
E+ E E YEID +KLENVL LLQSS DG LES+LD+F LDLHE+FV+KVLETP VLGENL
Sbjct: 18 ENVESETYEIDVEKLENVLHLLQSSDDGSLESTLDTFSLDLHEEFVVKVLETPHVLGENL 77
Query: 150 VCFFKW--------VTSGVVDALLKAICSS-VGKKEVYALWDIVKEIGEKEKGVLTVEIL 200
+ FFKW VT+ +D L+ +ICSS + +K YALWD+V+EIGEK +G+++V L
Sbjct: 78 IRFFKWAMKKQDLSVTTRAIDVLVSSICSSELRRKNAYALWDLVREIGEKNEGLVSVGSL 137
Query: 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260
N+LIAL SKLGKGKAA EVF+K D+GCV + ETYY+TIEAL RR +DWAW VCEKM++
Sbjct: 138 NQLIALLSKLGKGKAALEVFDKSKDFGCVPDSETYYYTIEALCRRSFYDWAWIVCEKMLD 197
Query: 261 TGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320
G LPDSEK+GKII WFCKG KAK+AH VY LA+EK PP+ + FLI SLC++D TV
Sbjct: 198 QGPLPDSEKIGKIICWFCKGSKAKDAHKVYLLAKEKSKCPPKPALYFLIGSLCRDDGTVN 257
Query: 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380
LAL+ML+DF GEA+KYAIKPFSSVIR LCR+KD+ GAK LLSKMI EGPPPGNAVFN+VI
Sbjct: 258 LALEMLNDFEGEAKKYAIKPFSSVIRGLCRIKDLDGAKQLLSKMIVEGPPPGNAVFNTVI 317
Query: 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR 440
S Y K GDM A+E++KLM SRGLKPDVYTYT ++SGY+NGGQMEEAC IL+EAKK HS+
Sbjct: 318 SGYCKGGDMKEAIEIMKLMESRGLKPDVYTYTVIISGYSNGGQMEEACYILSEAKKKHSK 377
Query: 441 LSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500
LSPVTYH LIRGYCKL++FD AL+LL EM+ GVQPN DEYNKLIQSLCLK+LDW TAEK
Sbjct: 378 LSPVTYHALIRGYCKLDQFDKALELLAEMEKFGVQPNADEYNKLIQSLCLKSLDWGTAEK 437
Query: 501 LLEDMRLKGLHLNGITRALIRAVKELEEDAI 531
L +M+ KGL+LN ITR+LI AVKELE++ +
Sbjct: 438 LFAEMKEKGLYLNSITRSLITAVKELEQEGL 468
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784775|emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 332/569 (58%), Positives = 403/569 (70%), Gaps = 49/569 (8%)
Query: 1 MWRSIAAG-SRLVARNF-GVATEKVHCSQTLSLN-ISR----SLSKPSLY--RSSRFLSE 51
MWRS + A+ F + V CS + L ISR S KPS ++ RF S
Sbjct: 1 MWRSATVSLFKNAAKKFRTIPNPSVVCSSSSQLALISRFQHFSTPKPSFLVSQNPRFFSN 60
Query: 52 -SPAANPKDESSF---------SPETDFSSRSFGENEYAQMDPSADAVESKEEEAYEIDG 101
SP + D+S+ S + FS S EN+ Q++ V+ + E +E+D
Sbjct: 61 LSPDIDGDDDSTIESAICSPSESEDQHFSPIS-DENDGTQIE--GFEVDLDKSEGFEVDL 117
Query: 102 DKLENVLSLLQSSVD--GYLESSLDSFELDLHEDFVLKVLETPLVLGENLVCFFKW---- 155
DKLE+VLSLLQSS D G LESS ++ L L+E+FV++VLETP V NL+ FFKW
Sbjct: 118 DKLESVLSLLQSSGDAVGSLESSFNAMGLSLNEEFVVRVLETPFVPANNLIGFFKWSWKN 177
Query: 156 ----VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG 211
VT+ VDAL++A+C SV +K+ Y+LWD+VKEIGEKE GVL V ILNELIA F+KLG
Sbjct: 178 PGFSVTTRAVDALVRAVCQSVRRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLG 237
Query: 212 KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG 271
KGKA EVFN FG+YG R IFDWA SVCEKM+ SLPDSEKV
Sbjct: 238 KGKAGLEVFNAFGEYG-----------------RSIFDWALSVCEKMLNASSLPDSEKVW 280
Query: 272 KIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG 331
IISWFCKG K K+A++VY LA+EK YPP++ V FLI+SLC+ED T+ +A++MLDDFSG
Sbjct: 281 NIISWFCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASLCREDGTISMAVEMLDDFSG 340
Query: 332 EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP 391
E KYAIKP+++VIR LCR KDV GAK LL KMI GPPPGNAVFN VI+ SKAG+M
Sbjct: 341 EECKYAIKPYTAVIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSKAGEMEE 400
Query: 392 AMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451
AM+M+KLM +RGLKPDVYTY+ +MSGYA+GG MEEAC +L+EAK+NHS+LSPVTYHTLIR
Sbjct: 401 AMKMMKLMETRGLKPDVYTYSVIMSGYAHGGMMEEACRVLSEAKRNHSKLSPVTYHTLIR 460
Query: 452 GYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLH 511
GYCKLE+FD A++LL EMK+ GVQPN DEYNKLIQSLCLKALDW+TAEKLLE+M+ GLH
Sbjct: 461 GYCKLEQFDKAVELLGEMKEHGVQPNTDEYNKLIQSLCLKALDWQTAEKLLEEMKQNGLH 520
Query: 512 LNGITRALIRAVKELEEDAIENGEALVEA 540
LNGITR LIRAVKELEE+ E VEA
Sbjct: 521 LNGITRGLIRAVKELEEEGRATEELRVEA 549
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556344|ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like isoform 1 [Glycine max] gi|356556346|ref|XP_003546487.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 308/547 (56%), Positives = 390/547 (71%), Gaps = 28/547 (5%)
Query: 1 MW-RSIAAGSR--LVARNFGVATEKVHCSQTLSLNISRSLSKPSLYRSSRFLSESPAANP 57
MW R +A +R VA N+ +++ + L I +S + P ++ + RFL S N
Sbjct: 1 MWTRILARATRAVTVAGNYSPIHQRI--CDPIFLKIPKS-TFPQIFNNPRFLVTSNLDN- 56
Query: 58 KDESSFSPETDFSSRSFGENEYAQMDPSADAVESKEEEAYEIDGDKLENVLSLLQSSVDG 117
SP++ +S G+ + A+ A + YE+D DKLE+VL LLQ+S DG
Sbjct: 57 ----ELSPDSSVNS---GDRQLAEEGEGAGGGGDR----YEVDSDKLESVLRLLQTSADG 105
Query: 118 YLESSLDSFELDLHEDFVLKVLETPLVLGENLVCFFKW--------VTSGVVDALLKAIC 169
LES LD +L LH+ V K+ ETP VL ENL+ FF W VT+ +V++L+ AIC
Sbjct: 106 SLESCLDDIDLTLHQQLVTKITETPFVLSENLIRFFWWAWSERSLGVTTPMVESLVLAIC 165
Query: 170 SS-VGKKEV-YALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG 227
+ V KKEV Y+LWD+VKEIGEKE G+L V+ILNELI+ F +LGKGKAA EVFNKF +
Sbjct: 166 GNDVRKKEVVYSLWDLVKEIGEKESGILNVKILNELISSFLRLGKGKAALEVFNKFEAFH 225
Query: 228 CVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH 287
CV + +TYYFTIEAL RR+ DWA VC+KM++ LPD EKVG I+SW CKG KAKEAH
Sbjct: 226 CVPDADTYYFTIEALCRRRALDWACGVCQKMVDAQILPDGEKVGAILSWLCKGKKAKEAH 285
Query: 288 VVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347
VY +A EK PP +VV+FL+ LC EDETVK AL+ML+D E R+ AIKPF +V+R+
Sbjct: 286 GVYVVATEKGKQPPVNVVSFLVVKLCGEDETVKFALEMLEDIPEEKRERAIKPFLAVVRA 345
Query: 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD 407
LCR+K+V AK L+ KMI +GPPPGNAVFN V++AYSKAG+M A+EM++LM SRGL+PD
Sbjct: 346 LCRIKEVDKAKELVLKMIEDGPPPGNAVFNFVVTAYSKAGEMGKAVEMMRLMESRGLRPD 405
Query: 408 VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467
VYTYT L S Y+NGG+MEEA +IL E KK H++L PV +HTLIRGYCKLE+FD ALKLL
Sbjct: 406 VYTYTVLASAYSNGGEMEEAQKILAEVKKKHAKLGPVMFHTLIRGYCKLEQFDEALKLLA 465
Query: 468 EMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527
EMKD GV P+VDEY+KLIQSLCLKALDW AEKL E+M+ GLHL GITR LIRAVKE+E
Sbjct: 466 EMKDYGVHPSVDEYDKLIQSLCLKALDWEMAEKLHEEMKESGLHLKGITRGLIRAVKEME 525
Query: 528 EDAIENG 534
++ +E G
Sbjct: 526 KEVVEAG 532
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442429|ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like [Cucumis sativus] gi|449477884|ref|XP_004155152.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/442 (63%), Positives = 355/442 (80%), Gaps = 9/442 (2%)
Query: 92 KEEEAYEIDGDKLENVLSLLQSSVDGYLESSLDSFELDLHEDFVLKVLETPLVLGENLVC 151
+E E+Y ++ ++LE+VLSL+QS+VDG ESSLD L L+EDFVLKV+ETP +LGENL+
Sbjct: 22 EEVESYGVNVEQLESVLSLIQSTVDGSFESSLDEMRLTLNEDFVLKVIETPHILGENLIR 81
Query: 152 FFKW---------VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNE 202
FF+W V++ VVD L++ +C+++ ++ Y+LW+++KEIG K+ +L EILN+
Sbjct: 82 FFRWAVNSHPEFEVSTPVVDVLVRVVCANLRQRVAYSLWELIKEIGGKQTSLLNAEILNQ 141
Query: 203 LIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETG 262
LIA FSKLGKGKAA EV N + GCV N E+YYFT+EAL RR +D AW VCEKM+++G
Sbjct: 142 LIAFFSKLGKGKAALEVLNSYEVLGCVPNAESYYFTVEALCRRSSYDLAWPVCEKMLDSG 201
Query: 263 SLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLA 322
S+P+S +VGKIIS FCKG KAK AH VY LA+EK + PQ + LI SLC++DETVKLA
Sbjct: 202 SMPESNRVGKIISLFCKGNKAKNAHSVYLLAKEKHVNLPQCYMNILIHSLCRDDETVKLA 261
Query: 323 LDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA 382
L+ML+DFS R+ AIKP+ VIRSLCR+KD AKTLL KMI+EGPPPGNA FN+VI
Sbjct: 262 LEMLNDFSTGERRRAIKPYMEVIRSLCRIKDTSKAKTLLQKMIAEGPPPGNAAFNAVICG 321
Query: 383 YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS 442
YSKAGD+ AME++KLM SRGLKPDVY+YT ++SGYA GGQM+EA E+L+EAKK H++LS
Sbjct: 322 YSKAGDLEEAMELIKLMESRGLKPDVYSYTAVISGYAKGGQMKEAYEVLDEAKKKHAKLS 381
Query: 443 PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502
+TYHTLIR +CKLEE+D ALKLL+EMK+ GVQPNVDEYNKLI+SLCLKA+DWRT+E+L
Sbjct: 382 HITYHTLIRNHCKLEEYDSALKLLSEMKNFGVQPNVDEYNKLIRSLCLKAVDWRTSERLF 441
Query: 503 EDMRLKGLHLNGITRALIRAVK 524
E+M+ GLHLNGITR LIRAV+
Sbjct: 442 EEMKENGLHLNGITRGLIRAVR 463
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547390|ref|XP_003542095.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 300/530 (56%), Positives = 384/530 (72%), Gaps = 28/530 (5%)
Query: 15 NFGVATEKVHCSQTLSLNISRSLSKPSLYRSSRFLSESPAANPKDESSFSPETDFSSRSF 74
N+ + + + S + L I +S + P ++ + RFL S N SP+ SS +
Sbjct: 18 NYSLINQPI--SDPIFLKIPKS-TFPQIFNNPRFLVTSNLDN-----ELSPD---SSVNG 66
Query: 75 GENEYAQMDPSADAVESKEEEAYEIDGDKLENVLSLLQSSVDGYLESSLDSFELDLHEDF 134
G+ + A+ + ++ YE+D D LE+VL LLQ+S DG LES LD +L LH+
Sbjct: 67 GDRQLAEQEEGGGGGDT-----YEVDSDTLESVLRLLQTSADGSLESCLDDMDLTLHQQL 121
Query: 135 VLKVLETPLVLGENLVCFFKW--------VTSGVVDALLKAICSS--VGKKE--VYALWD 182
V K+ ETP VL ENL+ FF W VT+ +V++L+ AIC + V KK+ VY+LWD
Sbjct: 122 VTKITETPFVLSENLIRFFWWAWSERSLEVTTPMVESLVLAICGNDDVRKKKEVVYSLWD 181
Query: 183 IVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242
+VKEIGEKE G+L V ILNELI+ FS+L KGKAA EVF+KF + CV + +TYYFTIEAL
Sbjct: 182 LVKEIGEKESGLLNVRILNELISSFSRLRKGKAALEVFDKFEAFHCVPDADTYYFTIEAL 241
Query: 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ 302
RR+ FDWA VC+KM++ +LPD+EKVG I+SW CKG KAKEAH VY +A EK PP
Sbjct: 242 CRRRAFDWACGVCQKMVDARTLPDAEKVGAILSWLCKGKKAKEAHGVYVVATEKGKLPPV 301
Query: 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362
+VV+FL+ LC EDETVK AL++L+D E R+ AIKPF +V+R+LCR+K+V AK LL
Sbjct: 302 NVVSFLVLKLCGEDETVKSALEILEDIPEEKRERAIKPFLAVVRALCRIKEVDKAKELLL 361
Query: 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG 422
KMI GPPPGNAVFN V++AYSKAG+M A+EM++LM SRGL+PDVYTYT L S Y+NGG
Sbjct: 362 KMIENGPPPGNAVFNFVVTAYSKAGEMGKAVEMMRLMESRGLRPDVYTYTVLASAYSNGG 421
Query: 423 QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYN 482
+MEEA +IL EAKK H +L PV +HTLIRGYCKLE+FD ALKLL EMKD GV+P+VDEY+
Sbjct: 422 EMEEAQKILAEAKKKHVKLGPVMFHTLIRGYCKLEQFDEALKLLAEMKDYGVRPSVDEYD 481
Query: 483 KLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDAIE 532
KLIQSLCLKALDW+ AEKL E+M+ GLHL GITR LIRAVKE+E++ +E
Sbjct: 482 KLIQSLCLKALDWKMAEKLQEEMKESGLHLKGITRGLIRAVKEMEKEVVE 531
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185040|ref|NP_186914.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546752|sp|P0C896.1|PP209_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02650, mitochondrial; Flags: Precursor gi|332640323|gb|AEE73844.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/577 (51%), Positives = 379/577 (65%), Gaps = 38/577 (6%)
Query: 1 MWRSIAAGSRLVARNFGVA------TEKVHCSQTLSLNISRSLSKPSLYRSSRFLS---- 50
M RS S+ +RN V T+ H +LS S + R+ RF S
Sbjct: 1 MLRSFLCRSQNASRNLAVTRISKKKTQTTHSLTSLSRFSYLESSGNASVRNIRFFSTSPP 60
Query: 51 --ESPAANPKDESSFSPETDFS-------------SRSFGENEYAQMDPSADA-VESKEE 94
E+P + P DE S + + S +G + D+ + + E
Sbjct: 61 TEENPVSLPADEIPISSAAELTLEESVASALGFSESGDYGGTSVEAVGEDGDSEIVAIEN 120
Query: 95 EAYEIDGDKLENVLSLLQSSVDGYLESSLDSFELDLHEDFVLKVLETPLVLGENLVCFFK 154
E Y+ D +KLE+VLSLL+S + LE L++ +DLH DFV++V E+P + G+NL+ F K
Sbjct: 121 EVYQFDDEKLESVLSLLRSDEES-LEFGLNALNVDLHLDFVVRVFESPGISGKNLIRFLK 179
Query: 155 W--------VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEK-GVLTVEILNELIA 205
W VT+ +V++LL AI S + + Y LWD+VKEIGEKE GVL +EILNELIA
Sbjct: 180 WATQNEEITVTTSLVESLLVAIASDTRRMDAYGLWDLVKEIGEKESCGVLNLEILNELIA 239
Query: 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLP 265
LF KLGK KAAF+VF+K ++G N +TYY T+EAL +R DWA SVCEKM+++G L
Sbjct: 240 LFGKLGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLS 299
Query: 266 DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325
+ E++G II+WFCK GKA+EA+ VY LA+ K+ P VA LI++LC+ D T+ A +M
Sbjct: 300 EGEQMGNIITWFCKEGKAEEAYSVYELAKTKEKSLPPRFVATLITALCKNDGTITFAQEM 359
Query: 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK 385
L D SGEAR+ IKPFS VI SLCRM++V AK LL MIS+GP PGNAVFN V+ A SK
Sbjct: 360 LGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSK 419
Query: 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445
GD+ A E+LKLM SRGLKPDVYTYT ++SGYA GG M+EA EIL EAKK H +LSPVT
Sbjct: 420 TGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVT 479
Query: 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505
YH LIRGYCK+EE+D ALKLLNEM GVQPN DEYNKLIQS CLKALDW AE L E+M
Sbjct: 480 YHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEM 539
Query: 506 RLKGLHLNGITRALIRAVKELEEDA--IENGEALVEA 540
+ KGLHLN I++ LIRAVKE+E +A E+G L EA
Sbjct: 540 KQKGLHLNAISQGLIRAVKEMESEAKVTEDGNLLAEA 576
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6957728|gb|AAF32472.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/569 (52%), Positives = 376/569 (66%), Gaps = 38/569 (6%)
Query: 9 SRLVARNFGVA------TEKVHCSQTLSLNISRSLSKPSLYRSSRFLS------ESPAAN 56
S+ +RN V T+ H +LS S + R+ RF S E+P +
Sbjct: 510 SQNASRNLAVTRISKKKTQTTHSLTSLSRFSYLESSGNASVRNIRFFSTSPPTEENPVSL 569
Query: 57 PKDESSFSPETDFS-------------SRSFGENEYAQMDPSADA-VESKEEEAYEIDGD 102
P DE S + + S +G + D+ + + E E Y+ D +
Sbjct: 570 PADEIPISSAAELTLEESVASALGFSESGDYGGTSVEAVGEDGDSEIVAIENEVYQFDDE 629
Query: 103 KLENVLSLLQSSVDGYLESSLDSFELDLHEDFVLKVLETPLVLGENLVCFFKW------- 155
KLE+VLSLL+S + LE L++ +DLH DFV++V E+P + G+NL+ F KW
Sbjct: 630 KLESVLSLLRSDEES-LEFGLNALNVDLHLDFVVRVFESPGISGKNLIRFLKWATQNEEI 688
Query: 156 -VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEK-GVLTVEILNELIALFSKLGKG 213
VT+ +V++LL AI S + + Y LWD+VKEIGEKE GVL +EILNELIALF KLGK
Sbjct: 689 TVTTSLVESLLVAIASDTRRMDAYGLWDLVKEIGEKESCGVLNLEILNELIALFGKLGKS 748
Query: 214 KAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI 273
KAAF+VF+K ++G N +TYY T+EAL +R DWA SVCEKM+++G L + E++G I
Sbjct: 749 KAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQMGNI 808
Query: 274 ISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEA 333
I+WFCK GKA+EA+ VY LA+ K+ P VA LI++LC+ D T+ A +ML D SGEA
Sbjct: 809 ITWFCKEGKAEEAYSVYELAKTKEKSLPPRFVATLITALCKNDGTITFAQEMLGDLSGEA 868
Query: 334 RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAM 393
R+ IKPFS VI SLCRM++V AK LL MIS+GP PGNAVFN V+ A SK GD+ A
Sbjct: 869 RRRGIKPFSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAK 928
Query: 394 EMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453
E+LKLM SRGLKPDVYTYT ++SGYA GG M+EA EIL EAKK H +LSPVTYH LIRGY
Sbjct: 929 EVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGY 988
Query: 454 CKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513
CK+EE+D ALKLLNEM GVQPN DEYNKLIQS CLKALDW AE L E+M+ KGLHLN
Sbjct: 989 CKIEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEMKQKGLHLN 1048
Query: 514 GITRALIRAVKELEEDA--IENGEALVEA 540
I++ LIRAVKE+E +A E+G L EA
Sbjct: 1049 AISQGLIRAVKEMESEAKVTEDGNLLAEA 1077
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828726|ref|XP_002882245.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328085|gb|EFH58504.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/541 (53%), Positives = 363/541 (67%), Gaps = 48/541 (8%)
Query: 44 RSSRFLS------ESPAANPKDESSFSPETDFS-------------SRSFGEN------- 77
R+ RF S E+P + P DE S + + S FG N
Sbjct: 555 RNIRFFSASPPTEENPVSLPTDEIPISSAAELTLEESVASALGFSESGHFGVNGGTSVEA 614
Query: 78 -----EYAQMDPSADAVESKEEEAYEIDGDKLENVLSLLQSSVDGYLESSLDSFELDLHE 132
EY D A+E++ E Y+ D +KLE+VLSLL+S + LE L++ +DLH
Sbjct: 615 VGGVAEYG--DSEIVAIENEVTEVYQFDDEKLESVLSLLRSDEES-LEFGLNALNVDLHL 671
Query: 133 DFVLKVLETPLVLGENLVCFFKW--------VTSGVVDALLKAICSSVGKKEVYALWDIV 184
DFV++V E P + G+NL+ F KW VT+ +V++LL AI + + Y LWD+V
Sbjct: 672 DFVVRVFEFPGISGKNLIRFLKWATEREEITVTTSLVESLLVAIAGDTRRMDAYGLWDLV 731
Query: 185 KEIGEKEKG--VLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242
KEIGEKE VL +EILNELIALF KLGK KAAF+VF+K ++G N +TYY T+EAL
Sbjct: 732 KEIGEKESSSSVLNLEILNELIALFGKLGKSKAAFDVFSKTAEFGFTPNAKTYYLTLEAL 791
Query: 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK-KMYPP 301
+R DWA SVCE+M+++G LP+ E++G IISWF K GKA+EA+ VY LA+ K K PP
Sbjct: 792 CKRSFMDWACSVCERMLKSGVLPEGEQMGNIISWFSKEGKAEEAYSVYELAKTKEKSLPP 851
Query: 302 QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLL 361
+SV A LIS+LC+ D T+ A +ML D SGEAR+ IKPFS VI SLCRM++V AK+LL
Sbjct: 852 RSV-ATLISALCKNDGTITFAQEMLGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKSLL 910
Query: 362 SKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANG 421
MIS+GP PGNAVFN ++ A SK GD+ A E+LKLM SRGLKPDVYTYT ++SGYA G
Sbjct: 911 LDMISKGPAPGNAVFNLIVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKG 970
Query: 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY 481
G M EA EIL EAKK H +LSPVTYH LIRGYCK+EE+D ALKLL EM GVQPN DEY
Sbjct: 971 GMMNEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALKLLKEMDRFGVQPNADEY 1030
Query: 482 NKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDA--IENGEALVE 539
NKLIQS CLKALDW AE L E+M+ KGLHLN I++ LIRAVKE+E +A E+ L E
Sbjct: 1031 NKLIQSFCLKALDWEKAEVLFEEMKQKGLHLNAISQGLIRAVKEMESEAKVTEDDNLLAE 1090
Query: 540 A 540
A
Sbjct: 1091 A 1091
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495886|ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 275/570 (48%), Positives = 345/570 (60%), Gaps = 91/570 (15%)
Query: 1 MWRSIAAG-SRLVARNF-GVATEKVHCSQTLSLN-ISR----SLSKPSLY--RSSRFLSE 51
MWRS + A+ F + V CS + L ISR S KPS ++ RF S
Sbjct: 1 MWRSATVSLFKNAAKKFRTIPNPSVVCSSSSQLALISRFQHFSTPKPSFLVSQNPRFFSN 60
Query: 52 -SPAANPKDESSF---------SPETDFSSRSFGENEYAQMDPSADAVESKEEEAYEIDG 101
SP + D+S+ S + FS S EN+ Q++ V+ + E +E+D
Sbjct: 61 LSPDIDGDDDSTIESAICSPSESEDQHFSPIS-DENDGTQIE--GFEVDLDKSEGFEVDL 117
Query: 102 DKLENVLSLLQSSVD--GYLESSLDSFELDLHEDFVLKVLETPLVLGENLVCFFKW---- 155
DKLE+VLSLLQSS D G LESS ++ L L+E+FV++VLETP V NL+ FFKW
Sbjct: 118 DKLESVLSLLQSSGDAVGSLESSFNAMGLSLNEEFVVRVLETPFVPANNLIGFFKWSWKN 177
Query: 156 ----VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG 211
VT+ VDAL++A+C SV +K+ Y+LWD+VKEIGEKE GVL V ILNELIA F+KLG
Sbjct: 178 PGFSVTTRAVDALVRAVCQSVRRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLG 237
Query: 212 KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG 271
KGKA EVFN FG+YGC N ++YYFTIEAL RR IFDWA SVCEKM+ SLPDSEKV
Sbjct: 238 KGKAGLEVFNAFGEYGCEPNADSYYFTIEALCRRSIFDWALSVCEKMLNASSLPDSEKVW 297
Query: 272 KIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG 331
IISWFCKG K K+A++VY LA+EK YPP++ V FLI+SLC+ED T+ +A++MLDDFSG
Sbjct: 298 NIISWFCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASLCREDGTISMAVEMLDDFSG 357
Query: 332 EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP 391
E RKYAIKP+++VIR LCR KDV GAK LL KMI GPPPGNAVFN VI+ SKAG+M
Sbjct: 358 EERKYAIKPYTAVIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSKAGEMEE 417
Query: 392 AMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451
AM+M+ + Q ++A E+L E K++ + + Y+ LI+
Sbjct: 418 AMKMMXKLE----------------------QFDKAVELLGEMKEHGVQPNTDEYNKLIQ 455
Query: 452 GYC-KLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510
C K ++ A KLL EMK GL
Sbjct: 456 SLCLKALDWQTAEKLLEEMKQ------------------------------------NGL 479
Query: 511 HLNGITRALIRAVKELEEDAIENGEALVEA 540
HLNGITR LIRAVKELEE+ E VEA
Sbjct: 480 HLNGITRGLIRAVKELEEEGRATEELRVEA 509
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | ||||||
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.588 | 0.421 | 0.267 | 5.6e-29 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.675 | 0.644 | 0.281 | 2.1e-27 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.651 | 0.471 | 0.278 | 3.1e-27 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.6 | 0.443 | 0.290 | 6.7e-27 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.587 | 0.346 | 0.283 | 7e-26 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.648 | 0.638 | 0.255 | 1.1e-25 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.662 | 0.578 | 0.282 | 1.3e-25 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.625 | 0.539 | 0.259 | 5.1e-25 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.464 | 0.276 | 0.261 | 5.6e-25 | |
| TAIR|locus:2038451 | 323 | AT1G63230 [Arabidopsis thalian | 0.514 | 0.860 | 0.288 | 8.9e-25 |
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 86/321 (26%), Positives = 153/321 (47%)
Query: 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCE 256
V N LI + + + A + YG V +++T+ ++ D A + E
Sbjct: 189 VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIRE 248
Query: 257 KMIETGSLPDSEKVGKIISWFCKGGKAKEA-HVVYTLAREKKMYPPQSVVAFLISSLCQE 315
+M+E G + V I+ FCK G+ ++A + + ++ + +P Q L++ LC+
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308
Query: 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV 375
VK A++++D E + ++SVI LC++ +V A +L +MI+ P
Sbjct: 309 GH-VKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVT 367
Query: 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435
+N++IS K + A E+ +++ S+G+ PDV T+ L+ G A E+ E +
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 436 KNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDW 495
TY+ LI C + D AL +L +M+ G +V YN LI C KA
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC-KANKT 486
Query: 496 RTAEKLLEDMRLKGLHLNGIT 516
R AE++ ++M + G+ N +T
Sbjct: 487 REAEEIFDEMEVHGVSRNSVT 507
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 2.1e-27, P = 2.1e-27
Identities = 107/380 (28%), Positives = 183/380 (48%)
Query: 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKF 223
L+K C + G E+ +D++ E+ E V I LI K G+ + A ++F +
Sbjct: 169 LIKGCCEA-G--EIEKSFDLLIELTEFGFSP-NVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 224 GDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA 283
G G VAN+ TY I L + + + + EKM E G P+ +++ CK G+
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 284 KEAHVVYTLAREKKMYPPQSVVAF--LISSLCQEDETVKLALDMLDDFSGEARKYAIKPF 341
K+A V+ RE+ + ++V + LI LC+E + + A ++D + + +
Sbjct: 285 KDAFQVFDEMRERGV--SCNIVTYNTLIGGLCREMK-LNEANKVVDQMKSDGINPNLITY 341
Query: 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401
+++I C + + A +L + S G P +N ++S + + GD + A +M+K M
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401
Query: 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV-TYHTLIRGYCKLEEFD 460
RG+KP TYT L+ +A ME+A + L + + + V TY LI G+C + +
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQ-LRLSMEELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 461 CALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGIT-RAL 519
A +L M + +PN YN +I C + +R A KLL++M K L N + R +
Sbjct: 461 EASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYR-ALKLLKEMEEKELAPNVASYRYM 519
Query: 520 IRAVKELEEDAIENGEALVE 539
I + +E + E LVE
Sbjct: 520 IEVL--CKERKSKEAERLVE 537
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 102/366 (27%), Positives = 171/366 (46%)
Query: 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFN 221
+A+L A S K+ + ++ KE+ E + V N LI F G A +F+
Sbjct: 173 NAVLDATIRS--KRNISFAENVFKEMLESQVSP-NVFTYNILIRGFCFAGNIDVALTLFD 229
Query: 222 KFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281
K GC+ N TY I+ + + D + + M G P+ +I+ C+ G
Sbjct: 230 KMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREG 289
Query: 282 KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPF 341
+ KE V T + + LI C+E + AL M + ++ +
Sbjct: 290 RMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQ-ALVMHAEMLRHGLTPSVITY 348
Query: 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401
+S+I S+C+ +++ A L +M G P + +++ +S+ G M A +L+ M
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408
Query: 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP--VTYHTLIRGYCKLEEF 459
G P V TY L++G+ G+ME+A +L + K+ LSP V+Y T++ G+C+ +
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG--LSPDVVSYSTVLSGFCRSYDV 466
Query: 460 DCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK--LLEDMRLKGLHLNGIT- 516
D AL++ EM + G++P+ Y+ LIQ C + RT E L E+M GL + T
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQR---RTKEACDLYEEMLRVGLPPDEFTY 523
Query: 517 RALIRA 522
ALI A
Sbjct: 524 TALINA 529
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 6.7e-27, P = 6.7e-27
Identities = 97/334 (29%), Positives = 158/334 (47%)
Query: 207 FSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD 266
F + + +A + +GCV N Y I +LS+ + A + E+M G +PD
Sbjct: 227 FCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPD 286
Query: 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDML 326
+E +I CK + EA + + P +L++ LC+ +D
Sbjct: 287 AETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-----VDAA 341
Query: 327 DDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI-SEGPPPGNAVFNSVISAYSK 385
D K I F+++I + AK +LS M+ S G P +NS+I Y K
Sbjct: 342 KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401
Query: 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445
G + A+E+L MR++G KP+VY+YT L+ G+ G+++EA +LNE + + + V
Sbjct: 402 EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG 461
Query: 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505
++ LI +CK A+++ EM G +P+V +N LI LC + + + A LL DM
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC-EVDEIKHALWLLRDM 520
Query: 506 RLKGLHLNGIT-RALIRAVKELEEDAIENGEALV 538
+G+ N +T LI A L I+ LV
Sbjct: 521 ISEGVVANTVTYNTLINAF--LRRGEIKEARKLV 552
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 7.0e-26, Sum P(2) = 7.0e-26
Identities = 91/321 (28%), Positives = 156/321 (48%)
Query: 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260
N+++ + KLG + A + +K + G + TY I +RK D A+ V +M
Sbjct: 222 NKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL 281
Query: 261 TGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320
G + +I C + EA ++ ++ + +P LI SLC + +
Sbjct: 282 KGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE 341
Query: 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380
AL+++ + K I ++ +I SLC A+ LL +M+ +G P +N++I
Sbjct: 342 -ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR 440
+ Y K G + A+++++LM SR L P+ TY L+ GY + +A +LN+ +
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVL 459
Query: 441 LSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500
VTY++LI G C+ FD A +LL+ M D G+ P+ Y +I SLC K+ A
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC-KSKRVEEACD 518
Query: 501 LLEDMRLKGLHLNGIT-RALI 520
L + + KG++ N + ALI
Sbjct: 519 LFDSLEQKGVNPNVVMYTALI 539
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 91/356 (25%), Positives = 151/356 (42%)
Query: 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVF 220
+ +L+ C + +L D + EIG K + N +I K + AF+ F
Sbjct: 158 IGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD----IVAYNAIIDSLCKTKRVNDAFDFF 213
Query: 221 NKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG 280
+ G N TY + L + A + MI+ P+ ++ F K
Sbjct: 214 KEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKN 273
Query: 281 GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP 340
GK EA ++ + P + LI+ LC D + A M D + +
Sbjct: 274 GKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR-IDEANQMFDLMVSKGCLADVVS 332
Query: 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400
++++I C+ K V L +M G +N++I + +AGD+ A E M
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392
Query: 401 SRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFD 460
G+ PD++TY L+ G + G++E+A I + +K L VTY T+IRG CK + +
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVE 452
Query: 461 CALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGIT 516
A L + G++P++ Y ++ LC K L E L M+ +GL N T
Sbjct: 453 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL-LHEVEALYTKMKQEGLMKNDCT 507
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 104/368 (28%), Positives = 165/368 (44%)
Query: 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKA 215
VT G V L +C S G + AL D+ +++ E+ V+ + +I K G
Sbjct: 211 VTYGPV---LNRLCKS-GNSAL-AL-DLFRKMEERNIKASVVQY-SIVIDSLCKDGSFDD 263
Query: 216 AFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275
A +FN+ G A+ TY I L +D + +MI +PD +I
Sbjct: 264 ALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALID 323
Query: 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK 335
F K GK EA +Y + + P LI C+E+ + A M D + +
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN-CLHEANQMFDLMVSKGCE 382
Query: 336 YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEM 395
I +S +I S C+ K V L ++ S+G P +N+++ + ++G + A E+
Sbjct: 383 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 442
Query: 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455
+ M SRG+ P V TY L+ G + G++ +A EI + +K+ L Y+ +I G C
Sbjct: 443 FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 502
Query: 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGI 515
+ D A L + D GV+P+V YN +I LC K A+ L M+ G +
Sbjct: 503 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKG-SLSEADMLFRKMKEDGCTPDDF 561
Query: 516 T-RALIRA 522
T LIRA
Sbjct: 562 TYNILIRA 569
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 5.1e-25, P = 5.1e-25
Identities = 90/347 (25%), Positives = 161/347 (46%)
Query: 183 IVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241
I+ E+ K KG ++ N +++ G+ A EV + + G V + +Y I
Sbjct: 282 IISEM--KSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRG 336
Query: 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP 301
S + A++ ++M++ G +P +I K + A ++ REK +
Sbjct: 337 CSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLD 396
Query: 302 QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLL 361
LI+ CQ + K A + D+ + + ++S+I LCR A L
Sbjct: 397 SVTYNILINGYCQHGDAKK-AFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELF 455
Query: 362 SKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANG 421
K++ +G P + N+++ + G+M A +LK M + PD TY LM G
Sbjct: 456 EKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGE 515
Query: 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY 481
G+ EEA E++ E K+ + ++Y+TLI GY K + A + +EM +G P + Y
Sbjct: 516 GKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTY 575
Query: 482 NKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELE 527
N L++ L K + AE+LL +M+ +G+ N + ++I A+ L+
Sbjct: 576 NALLKGLS-KNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLD 621
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 5.6e-25, P = 5.6e-25
Identities = 66/252 (26%), Positives = 128/252 (50%)
Query: 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM 298
+E L +R + A ++ +++++ G P+ +I CKG K EA +++ + +
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGL 398
Query: 299 YPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAK 358
P + LI C+ + + AL L + K ++ P++S+I C+ D+ A+
Sbjct: 399 RPNDVTYSILIDMFCRRGK-LDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 359 TLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGY 418
+++MI++ P + S++ Y G + A+ + M +G+ P +YT+T L+SG
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517
Query: 419 ANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478
G + +A ++ NE + + + + VTY+ +I GYC+ + A + L EM + G+ P+
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT 577
Query: 479 DEYNKLIQSLCL 490
Y LI LCL
Sbjct: 578 YSYRPLIHGLCL 589
|
|
| TAIR|locus:2038451 AT1G63230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 8.9e-25, P = 8.9e-25
Identities = 81/281 (28%), Positives = 129/281 (45%)
Query: 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292
+ Y I L + + A ++ KM ET II CK G A ++T
Sbjct: 42 QPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTE 101
Query: 293 AREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMK 352
+K ++P + +I S C+ A +L D + FS++I +L +
Sbjct: 102 MHDKGIFPDVITYSGMIDSFCRSGRWTD-AEQLLRDMIERQINPDVVTFSALINALVKEG 160
Query: 353 DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYT 412
V A+ + M+ G P +NS+I + K + A ML M S+ PDV T++
Sbjct: 161 KVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFS 220
Query: 413 GLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472
L++GY +++ EI E + + VTY TLI G+C++ + D A LLN M
Sbjct: 221 TLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISS 280
Query: 473 GVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM-RLKGLHL 512
GV PN + ++ SLC K + R A +LED+ + +G HL
Sbjct: 281 GVAPNYITFQSMLASLCSKK-ELRKAFAILEDLQKSEGHHL 320
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C896 | PP209_ARATH | No assigned EC number | 0.5181 | 0.9981 | 0.9357 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 540 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 7e-04 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 1e-19
Identities = 98/419 (23%), Positives = 160/419 (38%), Gaps = 90/419 (21%)
Query: 164 LLKAICSSV----GKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEV 219
+L ++C+S G V L V+E G K L LI+ +K GK A FEV
Sbjct: 442 MLMSVCASSQDIDGALRVLRL---VQEAGLKADCKL----YTTLISTCAKSGKVDAMFEV 494
Query: 220 FNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK 279
F++ + G AN T+ G +I +
Sbjct: 495 FHEMVNAGVEANVHTF-----------------------------------GALIDGCAR 519
Query: 280 GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEA------ 333
G+ +A Y + R K + P + V LIS+ C + V A D+L + E
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISA-CGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 334 ---------------------------RKYAIKPFSSV----IRSLCRMKDVHGAKTLLS 362
+Y IK V + S + D A ++
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG 422
M +G P F++++ AGD+ A E+L+ R +G+K +Y+ LM +N
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 423 QMEEACEILNEAKKNHSRLSPV--TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE 480
++A E+ + K +L P T + LI C+ + AL++L+EMK +G+ PN
Sbjct: 699 NWKKALELYEDIKS--IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 481 YNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN-GITRALIRAVKELEEDAIENGEALV 538
Y+ L+ + + D LL + G+ N + R + E A GE +V
Sbjct: 757 YSILLVA-SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVV 814
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 7e-13
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489
VTY+TLI GYCK + + ALKL NEMK G++PNV Y+ LI LC
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 371 PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420
P +N++I Y K G + A+++ M+ RG+KP+VYTY+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 6e-12
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP--VTYHTLIRGYCK 455
PDV TY L+ GY G++EEA ++ NE KK + P TY LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR--GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478
VTY+TLI G CK + AL+L EMK+ G++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 4e-06
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNE 433
+GLKPDV TY L+ G G+++EA E+L+E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 444 VTYHTLIRGYCKLEEFDCALKLLNEMK 470
VTY+TLI G C+ D A++LL+EM+
Sbjct: 8 VTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGV 474
VTY++LI GYCK + + AL+L EMK+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV 408
+N++I KAG + A+E+ K M+ RG++PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400
+ +++ + +K + K + + S G P + N V+ + K G + A + M
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 401 SRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451
R L ++ ++ G + G EA + E ++ S P T+ ++R
Sbjct: 186 ERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 369 PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428
P + FN ++S + + D+ A+ +L+L++ GLK D YT L+S A G+++
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSL 488
E+ +E + T+ LI G + + A M+ V+P+ +N LI S
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI-SA 551
Query: 489 CLKALDWRTAEKLLEDMR 506
C ++ A +L +M+
Sbjct: 552 CGQSGAVDRAFDVLAEMK 569
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 476 PNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGIT-RALIRA 522
P+V YN LI C K A KL +M+ +G+ N T LI
Sbjct: 1 PDVVTYNTLIDGYC-KKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGL 404
+NS+IS Y KAG + A+E+ K M+ +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 68/307 (22%), Positives = 120/307 (39%), Gaps = 70/307 (22%)
Query: 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSV 254
L V+++N LI ++ K G +A VF++ + RR W
Sbjct: 220 LDVDVVNALITMYVKCGDVVSARLVFDR-------------------MPRRDCISW---- 256
Query: 255 CEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ 314
+IS + + G+ E ++ RE + P + +IS
Sbjct: 257 ----------------NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS---- 296
Query: 315 EDETVKLALDMLDD--FSGEARKYAIKP-FS---SVIRSLCRMKDVHG----AKTLLSKM 364
A ++L D E Y +K F+ SV SL +M G A+ + S+M
Sbjct: 297 -------ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 365 ISEGPPPGNAV-FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQ 423
++ +AV + ++IS Y K G A+E LM + PD T ++S A G
Sbjct: 350 ETK-----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 424 MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNK 483
++ ++ A++ V + LI Y K + D AL++ + + + +V +
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTS 460
Query: 484 LIQSLCL 490
+I L L
Sbjct: 461 IIAGLRL 467
|
Length = 857 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 19/142 (13%)
Query: 320 KLALDMLDDFSGEARKY--AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN 377
L G A +Y A++ + A LL +I+ P N +
Sbjct: 294 ADLLAKRSKRGGLAAQYGRALQTY--------LAGQYDEALKLLQPLIAA--QPDNPYYL 343
Query: 378 SVISA-YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG--YANGGQMEEACEILNEA 434
+ +A A+E LK ++ L P+ L GG+ +EA ILN
Sbjct: 344 ELAGDILLEANKAKEAIERLK--KALALDPNSP-LLQLNLAQALLKGGKPQEAIRILNRY 400
Query: 435 KKNHSRLSPVTYHTLIRGYCKL 456
N P + L + Y +L
Sbjct: 401 LFNDP-EDPNGWDLLAQAYAEL 421
|
Length = 484 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.69 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.63 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.62 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.49 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.38 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.32 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.31 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.02 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.02 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.0 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.89 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.86 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.81 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.76 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.64 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.6 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.44 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.38 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.31 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.29 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.22 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.22 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.21 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.18 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.11 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.11 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.01 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.97 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.95 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.91 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.89 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.87 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.81 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.81 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.8 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.74 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.64 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.49 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.42 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.33 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.27 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.24 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.23 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.17 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.06 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.04 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.0 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.79 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.76 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.54 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.51 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.23 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.23 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.18 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.53 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.48 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.43 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.42 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.33 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.15 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.91 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.68 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.68 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.59 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.57 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.54 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.05 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.99 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.86 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.86 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.54 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.3 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.97 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.71 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.52 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.84 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.74 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.63 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.46 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.44 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 91.34 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.17 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 90.97 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.74 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.67 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.19 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.13 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.02 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.02 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.61 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.5 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.49 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.26 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.25 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.18 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.04 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.3 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.96 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.61 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 86.96 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 86.26 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.97 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.95 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.76 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.39 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 84.35 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.96 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 83.75 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.13 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.97 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.95 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 82.79 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.72 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.49 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.47 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.47 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.1 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.05 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 80.01 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=499.35 Aligned_cols=367 Identities=23% Similarity=0.300 Sum_probs=353.4
Q ss_pred hhhHhhcc---cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 148 NLVCFFKW---VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 148 ~ll~~~~w---~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.++.+|+. ++..+|+.++.++++.|+.+.|.++|+.|.+.+.. ||..+||+||.+|++.|++++|.++|++|.
T Consensus 424 eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~----pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 424 EAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK----ADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 34455544 56678999999999999999999999999997766 899999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCH
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE--KKMYPPQ 302 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~ 302 (540)
+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 6789999
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA 382 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 382 (540)
.+|+++|.+|++. |++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+
T Consensus 580 vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 580 ITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 383 YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCA 462 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 462 (540)
|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHH
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALI 520 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll 520 (540)
.++|++|.+.|+.||..||+.+|.+|+ +.|++++|.+++++|.+.|+.||..+| .++
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~-k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASE-RKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999988 899999999999999999999999998 444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-58 Score=491.03 Aligned_cols=367 Identities=23% Similarity=0.356 Sum_probs=343.3
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..++..+++.|..++|..+|+.|.. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus 409 ~~~li~~~~~~g~~~eAl~lf~~M~~--------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 409 HAKFFKACKKQRAVKEAFRFAKLIRN--------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC--------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444555555555555555554432 7999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.++++. |+++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~d 559 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-GAVD 559 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHhHh--ccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 321 LALDMLDDFSG--EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 321 ~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
+|.++|++|.. .++.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999986 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHH-------------HHHhhhhccccc
Q 042609 479 DEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKE-------------LEEDAIENGEAL 537 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~-------------l~~~~~~~~~~~ 537 (540)
.+||.||.+|| +.|++++|.++|++|.+.|+.||..|| .++.++++ |.+.|+.||..+
T Consensus 720 vtyN~LI~gy~-k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 720 STMNALITALC-EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999 899999999999999999999999999 77777754 556777777644
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=467.51 Aligned_cols=351 Identities=17% Similarity=0.202 Sum_probs=333.3
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETY 235 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~ 235 (540)
++..+|+.++..+++.|+.++|.++|+.|.+ ||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 3455677888888999999999999998865 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 315 (540)
+.++.+|++.|..+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.. ++..+|+++|.+|++.
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999964 5789999999999998
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 395 (540)
|+.++|+++|++|...|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++
T Consensus 304 -g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 304 -GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCC
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD-VGV 474 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~ 474 (540)
|++|. .||..+||+||.+|+++|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+
T Consensus 383 f~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 99997 4699999999999999999999999999999999999999999999999999999999999999985 799
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHH
Q 042609 475 QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELE 527 (540)
Q Consensus 475 ~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~ 527 (540)
.|+..+|++++.+|+ +.|++++|.+++++| ++.|+..++ .++.+++..+
T Consensus 459 ~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 459 KPRAMHYACMIELLG-REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred CCCccchHhHHHHHH-hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999 899999999998876 689999999 8888876533
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=459.23 Aligned_cols=232 Identities=16% Similarity=0.119 Sum_probs=202.2
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYY 236 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~ 236 (540)
+...|+.++.++++.|++++|.++|+.|++ ||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPR--------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCC--------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 445677777777899999999999988764 588899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQED 316 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 316 (540)
.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|.. |+..+|+++|.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~- 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKN- 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhC-
Confidence 99999999999999999999999999999999999999999999999999999998853 6788899999998887
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999998888999999999999988888888888888888888888888888888888888888888888777
Q ss_pred HHHHH
Q 042609 397 KLMRS 401 (540)
Q Consensus 397 ~~m~~ 401 (540)
++|.+
T Consensus 448 ~~m~~ 452 (857)
T PLN03077 448 HNIPE 452 (857)
T ss_pred HhCCC
Confidence 76653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-52 Score=451.70 Aligned_cols=330 Identities=16% Similarity=0.141 Sum_probs=267.8
Q ss_pred ccCCCHHHHHHHhhCCcccchhhhHhhcc----------------cccchHHHHHHHHHhhcChhhHHHHHHHHHHhccc
Q 042609 127 ELDLHEDFVLKVLETPLVLGENLVCFFKW----------------VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEK 190 (540)
Q Consensus 127 ~~~l~~~~v~~~l~~~~~~~~~ll~~~~w----------------~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~ 190 (540)
+.++|..++..+...+...++.++.+|-- .+..+|+.+|.++++.|+.++|..+|+.|...+..
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~ 184 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 55677777777766677777887777621 34567999999999999999999999999876554
Q ss_pred C-------------------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 191 E-------------------------------KGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 191 ~-------------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
+ +..||+.+||+||.+|++.|++++|.++|++|.. ||..+||.+|
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li 260 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMI 260 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHH
Confidence 2 1124556667788888888888888888888863 7888888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.+|.+|++. |++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~ 339 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL-GSW 339 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc-CCH
Confidence 8888888899999999999888889999999999999999999999999999999889999999999999998887 889
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|
T Consensus 340 ~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 340 GEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred HHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999885 46788899999999999999999999999998889999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
.+.|+.|+..+|++||.+|++.|++++|.++|++|.+. |..+|+++|.+|++.|+.++|.++|++|
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988653 3333343333333333333333333333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=436.93 Aligned_cols=352 Identities=16% Similarity=0.188 Sum_probs=336.1
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETY 235 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~ 235 (540)
++..+|+.++.++++.++.+.|.+++..|.+.+.. ||+.+||.|+..|++.|++++|.++|++|.+ ||..+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~----~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~ 192 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFE----PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASW 192 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeH
Confidence 34567999999999999999999999999987765 8999999999999999999999999999974 899999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 315 (540)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|+.|+..+++.+|.+|++.
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 395 (540)
|++++|.++|++|.. +|..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 273 -g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 273 -GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred -CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999999964 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
+..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999964 69999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCcHHHH-HHHHHHHH
Q 042609 476 PNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL-KGLHLNGITR-ALIRAVKE 525 (540)
Q Consensus 476 p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~-~ll~a~~~ 525 (540)
||..||+.+|.+++ +.|++++|.++|+.|.+ .|+.|+..+| .++.++.+
T Consensus 424 Pd~~T~~~ll~a~~-~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 424 PNHVTFLAVLSACR-YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred CCHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 99999999999987 99999999999999975 6999999999 67776655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-21 Score=191.76 Aligned_cols=307 Identities=16% Similarity=0.104 Sum_probs=246.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD---SEKVGKIISWF 277 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~ 277 (540)
......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 333445677889999999999998764 44566888888889999999999999998887643222 24677888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc----ccHHHHHHHHHcCCC
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI----KPFSSVIRSLCRMKD 353 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~ 353 (540)
.+.|++++|..+|+++.+.. ..+..++..+...+... |++++|.+.++.+...+..+.. ..+..+...+.+.|+
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999988753 34466777777777776 8999999999998876533321 135567778889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNE 433 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 433 (540)
+++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998753 3356678888899999999999999999998764332356788999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCC
Q 042609 434 AKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK--ALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 434 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~g~~~~A~~l~~~m~~~g~~ 511 (540)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++.. .|+.+++..++++|.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9887 467677788999999999999999999998875 68999999888876632 45889999999999998887
Q ss_pred CcHH
Q 042609 512 LNGI 515 (540)
Q Consensus 512 p~~~ 515 (540)
|+..
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 7654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-20 Score=204.62 Aligned_cols=353 Identities=16% Similarity=0.064 Sum_probs=296.5
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...+..+...+.+.|+.++|...|+.+.+..+. +...+..++..|...|++++|+.+++++.+.. +.+..+|..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 345677788888899999999999999887664 77889999999999999999999999998754 667889999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
+..++.+.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+.+.+.. ..+...+..+...+... |
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~ 683 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAA-K 683 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-C
Confidence 9999999999999999999998864 3567788899999999999999999999998754 33466777777777776 9
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
++++|..+++.+.... ..+...+..+...+.+.|++++|...|+++...+ |+..++..+..++.+.|++++|.+.++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998775 3456678888999999999999999999998864 444777888999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 398 LMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 398 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
.+.+.. +.+...+..+...|...|+.++|...|+++.+.. +.+..+++.+...+.+.|+ .+|+.+++++.+... -+
T Consensus 761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~ 836 (899)
T TIGR02917 761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NI 836 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CC
Confidence 998874 3478889999999999999999999999999875 5678899999999999999 889999999986532 24
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHHH
Q 042609 478 VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELEE 528 (540)
Q Consensus 478 ~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~~ 528 (540)
...+..+...+. +.|++++|.++++++.+.+.. +..++ .+..++.+.++
T Consensus 837 ~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 837 PAILDTLGWLLV-EKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 455556666665 889999999999999998765 55554 77777766554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-19 Score=201.12 Aligned_cols=335 Identities=13% Similarity=0.031 Sum_probs=229.2
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
.+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPD-----FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4555566666667777777777766665443 55666667777777777777777777776543 44566677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
..+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. ..+...|..+...+... |++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~ 617 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA-GDL 617 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc-CCH
Confidence 77777777777777777776653 3455566667777777777777777777776543 33455666666666665 777
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
++|...|+.+.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776543 2244556777777777777777777777777652 335667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 479 (540)
.+.+ ..+...+..+...|.+.|++++|...++.+...+ |+..++..+...+.+.|++++|.+.++++.+.. +.+..
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 7664 2356667777777777888888888888777764 444666677777777888888888877777653 33555
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 480 EYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.++.+...|. +.|++++|.++|+++.+...
T Consensus 772 ~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 772 LRTALAELYL-AQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHHHHhCC
Confidence 6666665554 67788888888888877643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-20 Score=186.61 Aligned_cols=299 Identities=13% Similarity=0.083 Sum_probs=249.7
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhC
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---QETYYFTIEALSRR 245 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---~~t~~~ll~~~~~~ 245 (540)
...|++++|...|+.+.+..+. +..+|..+...|...|++++|+.+++.+...+..++ ..++..+...|.+.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4558899999999999987664 788999999999999999999999999987542222 35688889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---H-HHHHHHHHHHhCCchHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ---S-VVAFLISSLCQEDETVKL 321 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~-~~~~ll~~~~~~~~~~~~ 321 (540)
|++++|..+|+++.+.. ..+..+++.++..|.+.|++++|.+.++.+.+.+..+.. . .+..+...+... |++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR-GDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC-CCHHH
Confidence 99999999999998763 356788999999999999999999999999886633322 1 233344455565 99999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
|...|+++.+... .+...+..+...+.+.|++++|.++|+++...+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987542 245567888899999999999999999998764333356788999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK---LEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 7 467677788999999999999999999999887 5899999998888775 56899999999999988777776
Q ss_pred H
Q 042609 479 D 479 (540)
Q Consensus 479 ~ 479 (540)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-17 Score=170.35 Aligned_cols=329 Identities=15% Similarity=0.086 Sum_probs=265.8
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
....+.|+.++|..+++.+....+. +...+..++..+...|++++|++.|+++.... +.+...+..+...+.+.
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~-----~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKN-----GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCC-----chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3556779999999999998887776 67778888888889999999999999998864 45677888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|++++|...+++.++.. +.+...+..+...+...|+.++|...++.+.... |+.......+..+... |++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~-g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNK-SRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99999999999998863 3457788889999999999999999999887655 3332222223345555 999999999
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHH
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP----AMEMLKLMRS 401 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 401 (540)
++.+......++...+..+...+.+.|++++|...++++.... +.+...+..+...|...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776433444455566788899999999999999998764 3467788889999999999986 8999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY 481 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 481 (540)
... .+...+..+...+.+.|++++|...+++..+.. +-+...+..+...|.+.|++++|...|+++... .|+...+
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 632 256788999999999999999999999999874 335677888899999999999999999999875 4555444
Q ss_pred HH-HHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 482 NK-LIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 482 ~~-ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.. +...+. ..|++++|.+.|++..+...
T Consensus 355 ~~~~a~al~-~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 355 NRYAAAALL-QAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhCh
Confidence 43 333454 88999999999999987643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-15 Score=156.50 Aligned_cols=295 Identities=9% Similarity=-0.007 Sum_probs=239.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
++.+....|++++|...|+.+.+..+. +...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~ 155 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVNVC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV 155 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344556689999999999999998876 78899999999999999999999999998763 456778888999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
..|++++|...++.+..... .+...+..+ ..+...|++++|..+++.+.+....++...+..+...+... |++++|+
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~ 232 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAI 232 (656)
T ss_pred HCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHH
Confidence 99999999999998877643 233344333 34788999999999999988765333444444445556665 9999999
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG----AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
..+++...... .+...+..+...+...|++++ |...|++..... +.+...+..+...+.+.|++++|...+++.
T Consensus 233 ~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 233 QTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999987643 345667888999999999986 899999998763 346778999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.... +...+..+..+|.+.|++++|...++++.+.. |+. ..+..+..++...|+.++|...|++..+.
T Consensus 311 l~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 311 LATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 887432 45677788899999999999999999999864 454 33444567889999999999999998865
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-14 Score=150.96 Aligned_cols=295 Identities=11% Similarity=0.012 Sum_probs=153.7
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+.+.|++++|...|+...+.. |+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..++...
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK------PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455566666666666655433 345566666666666677777777666666543 33455666666666666
Q ss_pred CChhHHHHHHHHHHHCCC----------------------------CC----CHHHHHHH--------------------
Q 042609 246 KIFDWAWSVCEKMIETGS----------------------------LP----DSEKVGKI-------------------- 273 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~----------------------------~p----~~~~~~~l-------------------- 273 (540)
|++++|..-|......+- .| ........
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 666666544432221100 00 00000000
Q ss_pred -------HHHH------HhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcc
Q 042609 274 -------ISWF------CKGGKAKEAHVVYTLAREKK-MYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIK 339 (540)
Q Consensus 274 -------i~~~------~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 339 (540)
+..+ ...+++++|.+.|+...+.+ ..|+.......+..+....|++++|+..|++...... -...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 0000 01234556666666665543 1232222222222222223666666666666554321 1233
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
.|..+...+...|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+... .+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHH
Confidence 45555556666666666666666665542 22445555666666666666666666666655421 13445555555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+.|++++|...|++..+.. +-+...|+.+...+...|++++|.+.|++..+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 6666666666666665542 22345566666666666666666666666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-14 Score=149.95 Aligned_cols=338 Identities=13% Similarity=-0.017 Sum_probs=253.5
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----------
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCV---------- 229 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~---------- 229 (540)
.|..+..++.+.|++++|...++...+..+. +...|..+..+|...|++++|+.-|......+-.
T Consensus 162 ~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-----~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
T TIGR00990 162 YYSNRAACHNALGDWEKVVEDTTAALELDPD-----YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVE 236 (615)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3556667788889999999999999988765 7889999999999999999998776544321100
Q ss_pred ------------------C----CHHHHHHH---------------------------HHHH------HhCCChhHHHHH
Q 042609 230 ------------------A----NQETYYFT---------------------------IEAL------SRRKIFDWAWSV 254 (540)
Q Consensus 230 ------------------p----~~~t~~~l---------------------------l~~~------~~~~~~~~a~~~ 254 (540)
| ........ +... ...+++++|.+.
T Consensus 237 ~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~ 316 (615)
T TIGR00990 237 RLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARA 316 (615)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHH
Confidence 0 00000000 0000 122578899999
Q ss_pred HHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHh
Q 042609 255 CEKMIETG-SLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 255 ~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 331 (540)
|+..++.+ ..| ....++.+...+...|++++|...|++..+.. |+.. .|..+-..+... |++++|+..|+....
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLEL-GDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 99998865 223 45678888889999999999999999998754 5543 455555555555 999999999999877
Q ss_pred ccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 332 EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +-+...|
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 64 2346678889999999999999999999998864 3367778888899999999999999999988763 2257788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSP------VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
+.+...+...|++++|...|++..+.....+. ..++..+..+...|++++|.+++++...... .+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 99999999999999999999999886422111 1122223344457999999999999887642 2344677777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
..+. +.|++++|+++|++..+..-
T Consensus 550 ~~~~-~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 550 QLLL-QQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHH-HccCHHHHHHHHHHHHHHhc
Confidence 7765 89999999999999876643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-14 Score=140.92 Aligned_cols=347 Identities=15% Similarity=0.113 Sum_probs=250.4
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...|..+.+.+-..|++.+|..+++.+.+..++ .+..|-.+..++...|+.+.|.+.|.+.++.+ |+.....+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-----fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-----FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 356788888888889999999999999998876 88999999999999999999999999988753 65554433
Q ss_pred H-HHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------
Q 042609 238 T-IEALSRRKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKK------------------ 297 (540)
Q Consensus 238 l-l~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------ 297 (540)
- -......|++++|...|.+.++. .|. .+.|+.|...+-..|++..|++.|++..+.+
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 2 23333456666666666665553 222 2344455555555555555555555544322
Q ss_pred --------------CCCCHHHH-HHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 298 --------------MYPPQSVV-AFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 298 --------------~~p~~~~~-~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
..|+.... ..+-..|+. .|..+.|+..|++..+.... =...|+.|..++-..|++.+|.+.++
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHH
Confidence 11322221 112222233 37888888888877664322 13569999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 363 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
+..... +--....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.++. +|
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P 419 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KP 419 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cc
Confidence 988753 334567888999999999999999999888765 344 467889999999999999999999999886 56
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 042609 442 SP-VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRAL 519 (540)
Q Consensus 442 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~l 519 (540)
+. ..|+.+-..|-..|+++.|.+.+.+.+.. .|... .++.|-.. .+.+|++.+|++-+++..+........+-++
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi-~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASI-YKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHH-hhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 64 78999999999999999999999998865 45544 44555544 5699999999999999887543322344466
Q ss_pred HHHH
Q 042609 520 IRAV 523 (540)
Q Consensus 520 l~a~ 523 (540)
+..+
T Consensus 497 lh~l 500 (966)
T KOG4626|consen 497 LHCL 500 (966)
T ss_pred HHHH
Confidence 6554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=134.74 Aligned_cols=307 Identities=15% Similarity=0.121 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+..+|..||.++++--..++|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 77899999999999999999999999998877789999999998775533 23788899999999999999999999
Q ss_pred HHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh----ccCCC----CcccHHH
Q 042609 276 WFCKGGKAKEA----HVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG----EARKY----AIKPFSS 343 (540)
Q Consensus 276 ~~~~~g~~~~A----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~----~~~~~----~~~~~~~ 343 (540)
+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++..+..+.+..++.++.. ...+| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999987765 567788999999999999999999988885554555555554432 32333 2333788
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 344 VIRSLCRMKDVHGAKTLLSKMISEG----PPPG---NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
.|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8889999999999998887765321 2233 22356677788888888999999999988877888888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C-------------------H-HHHHHHHHHHHHCCCC
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE-E-------------------F-DCALKLLNEMKDVGVQ 475 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~-------------------~-~~A~~~~~~m~~~g~~ 475 (540)
+....|+++-.-+++..++..|...+...-.-++..+++.. . + +.....-.+|......
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 98888888888888888887764444444434444444333 0 0 1111112234444343
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 476 PNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 476 p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
| ...+.+.-.+. +.|..++|.+++.-+.+.+
T Consensus 522 ~--t~l~~ia~Ll~-R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 522 A--TSLNCIAILLL-RAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred h--hHHHHHHHHHH-HcchHHHHHHHHHHHHhcC
Confidence 3 34444444444 8889999999998886554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-13 Score=155.13 Aligned_cols=329 Identities=13% Similarity=0.080 Sum_probs=233.5
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH------
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI------ 239 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll------ 239 (540)
..+.+.|++++|...|+++.+..+. +...+..+...|...|++++|++.|++..+.. +.+...+..+.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-----DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 3556778999999999999887765 77888889999999999999999999988753 23343433332
Q ss_pred ------------------------------------HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 240 ------------------------------------EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA 283 (540)
Q Consensus 240 ------------------------------------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 283 (540)
..+...|++++|.+.+++.++.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 23445677788888888777753 23456667777788888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcc---------cHHHHHHHHHcCCCH
Q 042609 284 KEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIK---------PFSSVIRSLCRMKDV 354 (540)
Q Consensus 284 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---------~~~~li~~~~~~g~~ 354 (540)
++|...|+++.+.. |+..........+....++.++|+..++.+......++.. .+..+...+...|+.
T Consensus 512 ~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 512 SQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 88888888777643 3332222222223333477888888777654322211111 123455667788899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
++|..+++. .+.+...+..+...|.+.|++++|+..|++..+... .+...+..+...|...|+.++|.+.++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999888772 345666777888999999999999999999988742 36788999999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-C
Q 042609 435 KKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV--QP---NVDEYNKLIQSLCLKALDWRTAEKLLEDMRL-K 508 (540)
Q Consensus 435 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~-~ 508 (540)
.+.. +.+...+..+..++...|++++|.++++++..... .| +...+..+...+ ...|++++|++.|++.+. .
T Consensus 664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~-~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE-AQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhc
Confidence 7753 23456677788889999999999999999886422 12 123343344444 488999999999998853 3
Q ss_pred CCC
Q 042609 509 GLH 511 (540)
Q Consensus 509 g~~ 511 (540)
|+.
T Consensus 742 ~~~ 744 (1157)
T PRK11447 742 GIT 744 (1157)
T ss_pred CCC
Confidence 444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-13 Score=144.41 Aligned_cols=331 Identities=9% Similarity=0.029 Sum_probs=205.4
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+...+...|++++|..+|+...+..+. +...+..++..+...|++++|+..+++..+.. +.+.. +..+..++.
T Consensus 55 lA~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~ 127 (765)
T PRK10049 55 VAVAYRNLKQWQNSLTLWQKALSLEPQ-----NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHH
Confidence 333445556666666666666655443 55556666666666666666666666665542 33444 555666666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--------------------------------------
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE-------------------------------------- 285 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-------------------------------------- 285 (540)
..|+.++|...++++.+... .+...+..+..++...|..+.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 66666666666666666531 233344444445544444443
Q ss_pred --------HHHHHHHHHHc-CCCCCHH-HHH----HHHHHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHc
Q 042609 286 --------AHVVYTLAREK-KMYPPQS-VVA----FLISSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCR 350 (540)
Q Consensus 286 --------A~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 350 (540)
|...++.+.+. ...|+.. .+. ..+..+... |+.++|+..|+.+...+.. |+. .-..+...|..
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence 44444444432 1122221 111 113344554 7888888888888776532 221 12224667888
Q ss_pred CCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCC---HHHHHH
Q 042609 351 MKDVHGAKTLLSKMISEGPPP---GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-----------KPD---VYTYTG 413 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~---~~t~~~ 413 (540)
.|++++|...|+++....... .......+..++...|++++|..+++.+.+... .|+ ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 888888888888876543211 134455666677888888888888888876521 123 224456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHhC
Q 042609 414 LMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE-YNKLIQSLCLKA 492 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~ 492 (540)
+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++.... .|+... +...... ....
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~-al~~ 440 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWT-ALDL 440 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHH-HHHh
Confidence 6677788888888888888887764 445678888888888888888888888888865 355433 3333333 3477
Q ss_pred CCHHHHHHHHHHHHHC
Q 042609 493 LDWRTAEKLLEDMRLK 508 (540)
Q Consensus 493 g~~~~A~~l~~~m~~~ 508 (540)
|++++|+++++++++.
T Consensus 441 ~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888898888888875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-13 Score=153.76 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=143.1
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHH--------
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVA-NQETYY-------- 236 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p-~~~t~~-------- 236 (540)
..+...|++++|...|++..+..+. +...+..|...|.+.|++++|+..|++..+..-.. +...+.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-----~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-----DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 3456679999999999999987765 88999999999999999999999999998754211 111121
Q ss_pred ----HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 042609 237 ----FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISS 311 (540)
Q Consensus 237 ----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~ 311 (540)
.....+.+.|++++|...|++.++.. +.+...+..+...|...|++++|++.|+++.+.. |+ ...+..+...
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l 428 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 22346778999999999999999874 3466778889999999999999999999998754 44 3333333332
Q ss_pred HHhCCchHHHHHHHHHHhHhccCC--------CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 312 LCQEDETVKLALDMLDDFSGEARK--------YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAY 383 (540)
Q Consensus 312 ~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 383 (540)
+ .. +..++|+.+++.+...... .....+..+...+...|++++|...|++..+..+ -+...+..+...|
T Consensus 429 ~-~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~ 505 (1157)
T PRK11447 429 Y-RQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDL 505 (1157)
T ss_pred H-Hh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 2 22 3445555555443221100 0011233344444455555555555555554321 1333444455555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 042609 384 SKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~ 401 (540)
.+.|++++|...|+++.+
T Consensus 506 ~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-13 Score=124.35 Aligned_cols=343 Identities=13% Similarity=0.095 Sum_probs=249.7
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYY 236 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~ 236 (540)
+..+|..+|.++|+....+.|++++++..+...+ .+..+||.+|.+-.-. ...++..+|....+.||.+|||
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k----v~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK----VYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe----eeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 4568999999999999999999999887765443 7899999999765422 2278999999999999999999
Q ss_pred HHHHHHHhCCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH----HHcCCCCC----HH
Q 042609 237 FTIEALSRRKIFDW----AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE-AHVVYTLA----REKKMYPP----QS 303 (540)
Q Consensus 237 ~ll~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m----~~~~~~p~----~~ 303 (540)
.++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++ ..+.+.|- ..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 67889999999999999999999999999888754 33343333 33334432 23
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhHhcc----CCCCcc---cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 304 VVAFLISSLCQEDETVKLALDMLDDFSGEA----RKYAIK---PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF 376 (540)
Q Consensus 304 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 376 (540)
-+...|..+... .+.+.|.++-.-+.... +.++.. -|..+....|+....+.-...|+.|.-.-.-|+..+.
T Consensus 358 FF~~AM~Ic~~l-~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 358 FFQSAMSICSSL-RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 344455555544 67777776655443221 122211 1677888889999999999999999866667888899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHH-------HHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG-QM--------E-----EACEIL-------NEAK 435 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~--------~-----~A~~~~-------~~m~ 435 (540)
..++++..-.|+++-.-+++..++..|...+...-.-++..+++.. +. . -|..++ .+|.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999998876656665555666666544 11 1 111222 2233
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 042609 436 KNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-V---QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 436 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~---~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
+. .-.....+.++-.+.+.|..++|.+++..+.+.+ - .|......-+++... +..+.-.|...++-|...+..
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~-~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK-VSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCch
Confidence 33 3455667788888899999999999999986433 2 333344445555543 677889999999999776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-12 Score=139.76 Aligned_cols=338 Identities=13% Similarity=0.039 Sum_probs=244.0
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
+....-.|+.++|.++|.......+. +...+..+...+...|++++|+++|++..+.. +.+...+..+...+..
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~-----~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQL-----PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34556679999999999988764432 67789999999999999999999999988763 4567778888889999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCCchHHH--
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVV-AFLISSLCQEDETVKL-- 321 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~~-- 321 (540)
.|++++|...+++.++.. +.+.. +..+..++...|+.++|...++++.+.. |+.... ..+...+.. .+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~-~~~~e~Al 170 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRN-NRLSAPAL 170 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-CCChHHHH
Confidence 999999999999998873 34555 8888999999999999999999999865 544333 333333322 244443
Q ss_pred --------------------------------------------HHHHHHHhHhc-cCCCCccc-HH----HHHHHHHcC
Q 042609 322 --------------------------------------------ALDMLDDFSGE-ARKYAIKP-FS----SVIRSLCRM 351 (540)
Q Consensus 322 --------------------------------------------a~~~~~~m~~~-~~~~~~~~-~~----~li~~~~~~ 351 (540)
|++.++.+... ...|+... +. ..+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 44444444432 11222211 11 113345677
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 042609 352 KDVHGAKTLLSKMISEGPP-PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP---DVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A 427 (540)
|++++|...|+.+.+.+.+ |+.. -..+..+|...|++++|+..|+++.+..... .......+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999877532 3322 2225678999999999999999987653211 134566677788999999999
Q ss_pred HHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC
Q 042609 428 CEILNEAKKNHS-----------RLS---PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKAL 493 (540)
Q Consensus 428 ~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g 493 (540)
..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+. ..|
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~-~~g 407 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ-ARG 407 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 999999987631 123 2355677788999999999999999998653 334555666665554 889
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHH
Q 042609 494 DWRTAEKLLEDMRLKGLHLNGITRA 518 (540)
Q Consensus 494 ~~~~A~~l~~~m~~~g~~p~~~t~~ 518 (540)
++++|++.+++.... .|+...+.
T Consensus 408 ~~~~A~~~l~~al~l--~Pd~~~l~ 430 (765)
T PRK10049 408 WPRAAENELKKAEVL--EPRNINLE 430 (765)
T ss_pred CHHHHHHHHHHHHhh--CCCChHHH
Confidence 999999999999875 46654443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-13 Score=131.11 Aligned_cols=317 Identities=14% Similarity=0.134 Sum_probs=224.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKV-GKII 274 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li 274 (540)
-..+|..+...+-..|++++|+.+++.|.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 56899999999999999999999999998864 446889999999999999999999999999886 4665443 3444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCC-cccHHHHHHHHHcCCC
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYA-IKPFSSVIRSLCRMKD 353 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 353 (540)
...-..|++++|...|.+..+.. |...+..+-++......|+...|+..|++..... |+ ...|-.|...|...+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhc
Confidence 55566899999999999888754 5443333334444445599999999999887643 33 3357778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANGGQMEEACEILN 432 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~ 432 (540)
++.|...+.+..... +-..+.+..|...|...|.++-|++.+++..+. .|+ ...|+.|..++-..|++.+|.+.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 888888887776542 223456666777777778888888888777765 333 4567778788777788888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 042609 433 EAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 433 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
+..... .-.....+.|...|...|.+++|..+|....+- .|... .++.|-..| ++.|++++|+.-+++.++ +.
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~-kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIY-KQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHH-HhcccHHHHHHHHHHHHh--cC
Confidence 777653 233456677777777778888888777777653 44433 344444333 477777777777777765 34
Q ss_pred CcHH-HH-HHHHHHHHHHH
Q 042609 512 LNGI-TR-ALIRAVKELEE 528 (540)
Q Consensus 512 p~~~-t~-~ll~a~~~l~~ 528 (540)
|... .+ ++...++++++
T Consensus 419 P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGD 437 (966)
T ss_pred chHHHHHHhcchHHHHhhh
Confidence 4431 12 44444555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-11 Score=127.29 Aligned_cols=339 Identities=13% Similarity=0.054 Sum_probs=222.6
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..++..+...|+.++|+..+++...-.. ........+...|...|++++|+++|+++.+.. +-+...+..++..
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n-----~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~ 145 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMN-----ISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMT 145 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3667777777888888888777652111 133334444557777788888888888887764 3456666677777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVK 320 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 320 (540)
+...++.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+.+ |+.. .+..++..+... |-..
T Consensus 146 y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~-~~~~ 220 (822)
T PRK14574 146 QADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRN-RIVE 220 (822)
T ss_pred HhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-CCcH
Confidence 78888888888888887765 4555555555555545566656888888887765 4433 333333333332 3222
Q ss_pred HHHHH------------------------------------------------HHHhHhc-cCCCCccc-----HHHHHH
Q 042609 321 LALDM------------------------------------------------LDDFSGE-ARKYAIKP-----FSSVIR 346 (540)
Q Consensus 321 ~a~~~------------------------------------------------~~~m~~~-~~~~~~~~-----~~~li~ 346 (540)
.|+++ ++.+... +..|.... ..-.+-
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 22222 2222211 11122111 223455
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-----LKPDVYTYTGLMSGYANG 421 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~ 421 (540)
++...+++.++.+.|+.+...|.+.-..+--.+.++|...++.++|+.+|+.+.... ..++......|.-+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 677888899999999999887765445577788999999999999999999986642 123444467888999999
Q ss_pred CCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHS-----------RLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
+++++|..+++.+.+.-. .||. ..+..++..+...|+..+|++.++++.... +-|......+-..
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999987321 1222 344556777888999999999999998653 3356666666655
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCcHH
Q 042609 488 LCLKALDWRTAEKLLEDMRLKGLHLNGI 515 (540)
Q Consensus 488 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 515 (540)
+ ...|...+|+++++..... .|+..
T Consensus 460 ~-~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 460 Y-LARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred H-HhcCCHHHHHHHHHHHhhh--CCccH
Confidence 5 4788999999999766654 55543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-10 Score=122.53 Aligned_cols=332 Identities=10% Similarity=0.048 Sum_probs=247.9
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
...+...|++++|.++|+++.+..+. +...+..++..|...++.++|++.++++... .|+...+..++..+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-----n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-----NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHh
Confidence 34566679999999999999998876 7888889999999999999999999999876 4666666555555555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----------------------------------
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVY---------------------------------- 290 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~---------------------------------- 290 (540)
.++..+|.+.++++.+.. +-+...+..++....+.|-...|.++.
T Consensus 182 ~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 666666999999999874 335555566666655555443333322
Q ss_pred --------------HHHHHc-CCCCCH-HHH----HHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHc
Q 042609 291 --------------TLAREK-KMYPPQ-SVV----AFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCR 350 (540)
Q Consensus 291 --------------~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 350 (540)
+.+... +-.|.. ..| .-.+.++... ++..++++.|+.+...+.+....+-..+.++|..
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r-~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR-HQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 222221 111322 111 1245555665 8999999999999988876556678899999999
Q ss_pred CCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------------CCCHH-HH
Q 042609 351 MKDVHGAKTLLSKMISEG-----PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-------------KPDVY-TY 411 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t~ 411 (540)
.+++++|..+++.+.... .+++......|.-+|...+++++|..+++.+.+.-. .||-. .+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999997542 233555568899999999999999999999987411 12222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKLIQSLCL 490 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 490 (540)
..++..+...|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++..... .|+ ..+......++ .
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~a-l 495 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETA-M 495 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHH-H
Confidence 445677889999999999999998875 568899999999999999999999999777654 454 34444444444 4
Q ss_pred hCCCHHHHHHHHHHHHHCC
Q 042609 491 KALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~~g 509 (540)
..|+|++|.++.+.+.+..
T Consensus 496 ~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRS 514 (822)
T ss_pred hhhhHHHHHHHHHHHHhhC
Confidence 7899999999999998763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.9e-11 Score=117.81 Aligned_cols=257 Identities=14% Similarity=0.083 Sum_probs=129.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 208 SKLGKGKAAFEVFNKFGDYGCVANQETYY--FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 285 (540)
.+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|...++.+.+.. +-+..+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 5566666666666666543 34433222 22445556666666666666665553 2344555566666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI 365 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (540)
|.+++..+.+.+..++.. ...+- ..+|..++.......+.+...++|+.+-
T Consensus 206 a~~~l~~l~k~~~~~~~~-~~~l~----------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEH-RAMLE----------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHH----------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 666666666554332111 11000 0112222322233333444444444443
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 366 SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445 (540)
Q Consensus 366 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (540)
+. .+.+......+...+...|+.++|.+++++..+. .||.. -.++.+....++.+++.+..+...+.. +-|+..
T Consensus 257 ~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 257 RK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred HH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 22 2334555555566666666666666666555553 23331 112222233456666666666655542 234445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+..+...|.+.|++++|.+.|+...+. .|+..++..+...+. +.|+.++|.+++++-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~-~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD-RLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 555666666666666666666666543 456555555555543 556666666666544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-11 Score=106.04 Aligned_cols=292 Identities=14% Similarity=0.084 Sum_probs=209.9
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHH
Q 042609 209 KLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD---SEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 285 (540)
-.++.++|+++|-+|.+.. +-+..+.-+|-+.+-+.|.+|.|++++..+.++--.+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3678999999999998743 34555667788889999999999999999887621111 2334466777899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcc----cHHHHHHHHHcCCCHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIK----PFSSVIRSLCRMKDVHGAKTLL 361 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~ 361 (540)
|+.+|..+.+.+. --.....-++.-|-.. .+|++|++.-+++...+..+..+ .|.-+...+....+++.|..++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999887551 1223334455555554 89999999998887765443322 1555566666778999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 362 SKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 362 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
.+..+.+. ..+..--.+-+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+.. +
T Consensus 204 ~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 99887532 24444455677888999999999999999998655556678889999999999999999999998874 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Q 042609 442 SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK--ALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~g~~~~A~~l~~~m~~~ 508 (540)
+...-..+.+.-....-.+.|...+.+-+.. +|+...+..+|..-... .|.+.+-+-++++|...
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444445555444445556666665555544 69999999999754322 34466677777777644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-11 Score=118.44 Aligned_cols=268 Identities=12% Similarity=0.043 Sum_probs=163.3
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQET-YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG--KIISWFCKGGKAKEA 286 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A 286 (540)
.|++++|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555543321 11222 222233335556666666666666543 23332221 223455555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 287 HVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 287 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
...++++.+.. |+ +......+...|.+.|++++|.+++..+.+
T Consensus 173 l~~l~~~~~~~--P~-----------------------------------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 173 RHGVDKLLEVA--PR-----------------------------------HPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHhcC--CC-----------------------------------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555554433 22 233344555555556666666666666665
Q ss_pred CCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 367 EGPPPGN-------AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 367 ~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|..++++..+.
T Consensus 216 ~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-- 292 (398)
T PRK10747 216 AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-- 292 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 4433211 13344444444455566667777666443 2347788899999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-H
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-A 518 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ 518 (540)
.++.... ++.+....++.+++.+..+...+. .|+...+...+..++.+.|+|++|.+.|++..+. .|+..++ .
T Consensus 293 ~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~ 366 (398)
T PRK10747 293 QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAW 366 (398)
T ss_pred CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 4555322 344445669999999999999976 5676666656656667999999999999999985 6777775 5
Q ss_pred HHHHHHHHH
Q 042609 519 LIRAVKELE 527 (540)
Q Consensus 519 ll~a~~~l~ 527 (540)
+-.++.+++
T Consensus 367 La~~~~~~g 375 (398)
T PRK10747 367 LADALDRLH 375 (398)
T ss_pred HHHHHHHcC
Confidence 555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-10 Score=116.95 Aligned_cols=130 Identities=15% Similarity=0.039 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT---YTGLMSGYANGGQMEEACEILNEAKKNHSRLSP--VTY 446 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 446 (540)
+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.. +-|+ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 5555555666666666666666666666554 222221 1111111223455566666666555542 2223 444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
.++...|.+.|++++|.+.|+........|+...+..+...+. +.|+.++|.+++++-
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~-~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD-QAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 5566666666666666666664332223466666555555443 566666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-09 Score=118.71 Aligned_cols=322 Identities=12% Similarity=0.047 Sum_probs=225.3
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHhCCC--
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY-G-CVANQETYYFTIEALSRRKI-- 247 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g-~~p~~~t~~~ll~~~~~~~~-- 247 (540)
+...++.+.+..|-+..+. +....-.+.-.....|+.++|.++|+..... + -.++.....-++..|.+.+.
T Consensus 356 ~~~~~~~~~~~~~y~~~~~-----~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPA-----NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred CchhHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 5556677777666654332 5555555555566788888888888887652 1 22344445566667766654
Q ss_pred -hhHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 248 -FDWAWSV----------------------CEKMIET-GS-LP--DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 248 -~~~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
...+..+ ++..... +. ++ +...|..+..++.. |+.++|...|.+..... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2222222 2222211 11 23 56778888878776 78888999888877654 6
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 380 (540)
+......+...+... |++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. +.+...+..+.
T Consensus 508 d~~~~L~lA~al~~~-Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 508 DAWQHRAVAYQAYQV-EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred chHHHHHHHHHHHHC-CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 544322223333344 9999999999987554 3344456677788889999999999999998764 22333343444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFD 460 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 460 (540)
..+...|++++|...+++..+. .|+...|..+...+.+.|+.++|...+++..+.. +-+...++.+...+...|+.+
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4455669999999999999876 5678889999999999999999999999999875 346678888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 461 CALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 461 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
+|+..+++..+... -+...+..+-.++. ..|++++|+..+++..+...
T Consensus 661 eAi~~l~~AL~l~P-~~~~a~~nLA~al~-~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 661 QSREMLERAHKGLP-DDPALIRQLAYVNQ-RLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 99999999987532 24455566665655 88999999999999987643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-10 Score=117.10 Aligned_cols=300 Identities=10% Similarity=0.020 Sum_probs=216.4
Q ss_pred hHHHHHHHHH--hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH--HHH
Q 042609 160 VVDALLKAIC--SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ--ETY 235 (540)
Q Consensus 160 ~~~~li~~~~--~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~--~t~ 235 (540)
.+..+..+.. ..|+++.|.+.+....+..+. ....+-.....+...|++++|.+.|.+..+.. |+. ...
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~-----~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~ 156 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAE-----PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHH
Confidence 4445555544 459999999999877665432 23444555677788899999999999987643 444 344
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL--- 312 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--- 312 (540)
-.....+...|+++.|...++.+.+.. +-+..+...+...|.+.|++++|.+.+..+.+.++.+...........+
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445788889999999999999999885 3467788899999999999999999999999987543333222222222
Q ss_pred HhCCchHHHHHHHHHHhHhccCC---CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC
Q 042609 313 CQEDETVKLALDMLDDFSGEARK---YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV-FNSVISAYSKAGD 388 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~ 388 (540)
... +..+++.+.+..+...... .+...+..+...+...|+.++|.+++++..+......... .....-.....++
T Consensus 236 l~~-~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 236 LDE-AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHH-HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 222 2333334455555544321 3677788899999999999999999999998633222111 1112222334577
Q ss_pred hhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDV---YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKL 465 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 465 (540)
.+.+.+.++...+. .|+. ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++
T Consensus 315 ~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 315 NEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred hHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899998887766 3443 556688889999999999999999644444478999999999999999999999999
Q ss_pred HHHHH
Q 042609 466 LNEMK 470 (540)
Q Consensus 466 ~~~m~ 470 (540)
|++..
T Consensus 393 ~~~~l 397 (409)
T TIGR00540 393 RQDSL 397 (409)
T ss_pred HHHHH
Confidence 99865
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-10 Score=122.10 Aligned_cols=326 Identities=9% Similarity=0.008 Sum_probs=233.0
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hHHHHHH------------HHH---------
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK---GKAAFEV------------FNK--------- 222 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~------------f~~--------- 222 (540)
...+.|+.++|..+|...-.. ...+.++...-+-|+..|.+.+. ..+++.+ ..+
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPF--QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCC--CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 445678889999999877664 12223466677788888888876 4444333 111
Q ss_pred -Hhh-CCC-CC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 223 -FGD-YGC-VA--NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 223 -m~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
... .+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++...
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 111 111 34 66777777777776 8888999988888765 366555445556667999999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 298 MYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN 377 (540)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 377 (540)
.|+...+..+...+... |+.++|...++........ ....+..+...+.+.|++++|...+++..+. .|+...|.
T Consensus 539 -~p~~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAA-GNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred -CCCcHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 34455555555555665 9999999999998876421 2222333334445669999999999999875 45788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
.+..++.+.|++++|+..|++....... +...++.+...+...|+.++|+.++++..+.. +-+...+..+..++...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999887422 56677888889999999999999999999874 346788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 458 EFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
++++|...|++..+. .|+......-+.....+..+++.|.+-+++-..
T Consensus 692 d~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 692 DMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999865 354422221221122244456666666555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.3e-10 Score=112.39 Aligned_cols=326 Identities=13% Similarity=0.096 Sum_probs=249.5
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
-.|+.++|.+++.++.+..+. +...|.+|...|-..|+.++++..+-..-... +-|...|..+-....+.|+++
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 349999999999999987775 88999999999999999999999876654443 567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhCCchHHHHHHH
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSV----VAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~~a~~~ 325 (540)
.|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.......|..- ....+..+... ++.+.|.+.
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~-~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH-NERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 9999999999985 35555555667889999999999999999988663112221 22245555555 566888888
Q ss_pred HHHhHhc-cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHH
Q 042609 326 LDDFSGE-ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG---------------------------PPPGNAVFN 377 (540)
Q Consensus 326 ~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------~~p~~~~~~ 377 (540)
++..... +-..+...++.++..+.+..+++.|......+.... ..++..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 8877652 233455668999999999999999998888877611 22333331
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
.++-++......+....+.....+..+ .-+...|.-+..+|.+.|++.+|+.+|..+.....--+...|--+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 222334455555555556666666653 335667889999999999999999999999987666678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.|..++|.+.|+..+.. .|+..--..=+..+..+.|+.++|.+.++.|.
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999864 45544444444444558999999999999965
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=130.62 Aligned_cols=260 Identities=18% Similarity=0.163 Sum_probs=59.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVA-NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG 280 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 280 (540)
.+...+.+.|++++|++++++......+| |..-|..+...+...++++.|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44556666777777777775443322123 333333344455556667777777777666542 234445555555 466
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc-CCCCcccHHHHHHHHHcCCCHHHHHH
Q 042609 281 GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEA-RKYAIKPFSSVIRSLCRMKDVHGAKT 359 (540)
Q Consensus 281 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~ 359 (540)
+++++|.++++..-++. ++...+..++..+... ++++++.++++.+.... ...+...|..+...+.+.|+.++|..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666655443322 2233333334333333 45555555555443221 12233334444444455555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 360 LLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 360 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
++++..+.. +.|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|...+++..+..
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 555554431 1134444444545555555555444444443331 1223334444445555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+.|+.....+..++...|+.++|.++..+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 224444444455555555555555544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=126.60 Aligned_cols=259 Identities=17% Similarity=0.148 Sum_probs=105.7
Q ss_pred HHHHHhhcChhhHHHHHHH-HHHh-cccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 165 LKAICSSVGKKEVYALWDI-VKEI-GEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~-~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
...+.+.|++++|.++++. +... .+. |...|..+...+...++++.|++.++++...+ +-+...+..++..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~-----~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPD-----DPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccc-ccccccccccccc-
Confidence 3455677999999999954 4443 233 67778888888888999999999999998866 3356667777777
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP-PQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~ 321 (540)
...+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+....-.+ +...|..+-..+.+. |+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL-GDPDK 164 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC-CHHHH
T ss_pred cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHH
Confidence 78899999999998776553 566677888899999999999999999987644333 334444444444554 99999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
|++.+++..+.... +......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+
T Consensus 165 A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999876432 46678889999999999999999998887653 45666788899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
.. +.|......+..++...|+.++|.++.++..+
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT-----------------
T ss_pred cc-cccccccccccccccccccccccccccccccc
Confidence 63 23778888889999999999999999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-10 Score=114.20 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=225.5
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--------------
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYG-------------- 227 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-------------- 227 (540)
.+.+++-..|++++|..+|-+....... + +..+--|...|.+.|+.+.+...|+...+..
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-----~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADND-----NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCC-----CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 4455555556666666666554443332 1 2333444555555555555555555543321
Q ss_pred -----------------------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhc
Q 042609 228 -----------------------CVANQETYYFTIEALSRRKIFDWAWSVCEKM----IETGSLPDSEKVGKIISWFCKG 280 (540)
Q Consensus 228 -----------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~ 280 (540)
.+.|...|-.+...+-..+-+. ++.+|... ...+-.+-....|.+...+...
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 1233444444444443332222 24444333 3445557788999999999999
Q ss_pred CCHHHHHHHHHHHHHc---CCCCCH-----HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-----------------
Q 042609 281 GKAKEAHVVYTLAREK---KMYPPQ-----SVVAFLISSLCQEDETVKLALDMLDDFSGEARK----------------- 335 (540)
Q Consensus 281 g~~~~A~~~~~~m~~~---~~~p~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~----------------- 335 (540)
|+++.|...|+..+.. ...++. .|....+..+....++.+.|.++|..+......
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccC
Confidence 9999999999988765 122333 233334444444446777777777776654211
Q ss_pred ----------------CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------c
Q 042609 336 ----------------YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE-GPPPGNAVFNSVISAYSK------------A 386 (540)
Q Consensus 336 ----------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~ 386 (540)
.+...++.+...+.+..++..|..-|+...+. ...+|..+.-+|-+.|.. .
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 12222333333444444455555544443322 112344444444443332 2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 387 GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (540)
+..++|+++|.+..+...+ |...-|-+--.++..|++.+|..+|.+..+... -+..+|-.+..+|...|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 4578889999888877543 778888888889999999999999999998752 35567889999999999999999999
Q ss_pred HHHH-HCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHhhh
Q 042609 467 NEMK-DVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDAI 531 (540)
Q Consensus 467 ~~m~-~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~~~~ 531 (540)
+... +.+-.-+....+.|-.++. +.|++.+|.+.+.......+.-..+-|++.-...++...-.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y-~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l 768 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWY-EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL 768 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence 9866 5555567788888888888 78889999999988888766666677777777766665443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-09 Score=97.70 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=215.7
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhC
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN------QETYYFTIEALSRR 245 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~------~~t~~~ll~~~~~~ 245 (540)
...++|..+|-.|.+..+. +..+--+|.+.|.+.|.+++|+++.+.+.+. || ......|.+-|...
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-----t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-----TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred cCcchHHHHHHHHHhcCch-----hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 4566899999999886554 6778889999999999999999999998764 44 23455677788899
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HH-HHHHHHHhCCchHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSV---VA-FLISSLCQEDETVKL 321 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~-~ll~~~~~~~~~~~~ 321 (540)
|-+|.|+++|..+.+.|. .-......|+..|-+..+|++|+.+-+++.+.+-.+...- |. -+-..+... .+.+.
T Consensus 121 Gl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~-~~~d~ 198 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS-SDVDR 198 (389)
T ss_pred hhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh-hhHHH
Confidence 999999999999988652 4455677899999999999999999998888764443322 11 122222333 78999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
|...+.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.+
T Consensus 199 A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 199 ARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999998877644 34445567788889999999999999999876655566788999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK---LEEFDCALKLLNEMKD 471 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 471 (540)
....++ .-..+-..-....-.+.|...+.+-... +|+...+..||..-.. .|...+.+.+++.|..
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 743333 3333433334455566666666665555 6999999999987643 4557777788888873
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-10 Score=103.77 Aligned_cols=305 Identities=14% Similarity=0.113 Sum_probs=211.6
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHH-HH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSL--PDSEKVGKIISWFCKGGKAK-EA 286 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~-~A 286 (540)
..+.+++++=.......|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--.+.++. -|
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 3455566666666666666555555555555555667777777777777776321 25566666543332222221 12
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 287 HVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 287 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
..++.- .+ .. ..|.. +|..|+...++.++|...|++..+.+.+ ....|+.|.+-|...++...|..-++..++
T Consensus 320 ~~v~~i-dK--yR--~ETCC-iIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 320 QNVSNI-DK--YR--PETCC-IIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHh-cc--CC--cccee-eehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 222221 11 11 12222 3444444448899999999998877644 355689999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 367 EGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY 446 (540)
Q Consensus 367 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (540)
.+ +.|-..|-.|-++|.-.+...-|+-.|++..... +-|...|.+|-.+|.+.+++++|+..|.+....| ..+...|
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 63 4588899999999999999999999999988763 2378999999999999999999999999999887 3466889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH-HHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKD----VG-VQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNG-ITRALI 520 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~ll 520 (540)
..|.+.|-+.++.++|.+.|++.++ .| +.|...--..++.-+..+.+++++|..+......- .+.. ....|+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~Ll 547 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 9999999999999999999988764 23 34434444555666667899999998877666543 3322 333566
Q ss_pred HHHHHH
Q 042609 521 RAVKEL 526 (540)
Q Consensus 521 ~a~~~l 526 (540)
+.++..
T Consensus 548 Reir~~ 553 (559)
T KOG1155|consen 548 REIRKI 553 (559)
T ss_pred HHHHHh
Confidence 555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-10 Score=103.99 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=129.6
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
|++++|.+.|++.......-....|+ +.-.+-..|++++|+++|-++... +.-++.+.--+.+.|-...+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 55666666666555432211111122 122234556666666666655432 2234455555566666666677777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
.+.... ++-|....+-|...|-+.|+-..|.+.+.+--+. ++-|..+..-|...|....-+++|+.+|++..- ++|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 554433 3446677777888888888888888877654443 355677777788888888888999999988764 579
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHH
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIR 521 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~ 521 (540)
+..-|-.||..+.++.|++.+|+.+++...++ +.-|.... -|++
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHH
Confidence 99999999999888999999999999998765 33343333 3444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-09 Score=99.13 Aligned_cols=287 Identities=15% Similarity=0.076 Sum_probs=164.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVV 289 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 289 (540)
.|+|.+|+++..+-.+.+ +.....|.....+.-+.|+.+.+-+++.+.-+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455555555555554444 1223334444444555555555555555555442234444444555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc-------ccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 290 YTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI-------KPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 290 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
.+.+.+.+ .-...........|... |++.....++..|.+.+.-.+. .+|..+++-....+..+.-...|+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555443 11233334444444444 5555555555555555433222 336666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS 442 (540)
Q Consensus 363 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (540)
..-.. ..-+...-.+++.-+.++|+.++|.++.++..+++..|+ -..+-.+.+.++.+.-.+..++-.+.. +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 65433 333455556667777777777777777777777766555 222233455666666666666555432 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 443 PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+-.+.+|-..|.+.+.|.+|...|+...+. .|+..+|+.+-++|. +.|+..+|.+..++-...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~-~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALD-QLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHH-HcCChHHHHHHHHHHHHH
Confidence 466777777777777788887777766654 577777777777776 777777777777766533
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-10 Score=113.33 Aligned_cols=287 Identities=10% Similarity=-0.021 Sum_probs=192.1
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHH-
Q 042609 212 KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETG--SLPDSEKVGKIISWFCKGGKAKEAHV- 288 (540)
Q Consensus 212 ~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~- 288 (540)
+.++|+..|.+..+. +.-+......+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+.-+-+. -+..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888875443 33444666777788888888888888888877653 123556666665433221 1111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042609 289 VYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG 368 (540)
Q Consensus 289 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 368 (540)
+-+.+.+.+ .-...+|.++=..|.-+ ++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 112222222 23456777666666655 7888888888887764322 567788888888888888888888887743
Q ss_pred CCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 369 PPPGNAVFNS---VISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445 (540)
Q Consensus 369 ~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (540)
.|...||+ |.-.|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.++|+++++++..... -|+..
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~ 559 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLC 559 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchh
Confidence 44455554 455688888888888888888776433 566667777777888888888888888887653 24444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
---.+..+...+++++|++.++++++. .|+..+...++.--+++.|+.+.|+.-|.-|.+...++..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 334456666778888888888888874 5777666666665566788888888887777766555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-08 Score=95.18 Aligned_cols=291 Identities=14% Similarity=0.070 Sum_probs=228.5
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
.|++.+|.++...-.+.+.. .+..|-.-+.+--..|+.+.+-.++.+.-+.--.++...+-+..+.....|+++.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-----p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-----PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-----hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh
Confidence 49999999999887776664 4566777777888899999999999999876335667778888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhCCchHHHHH
Q 042609 251 AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-------VVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 251 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~~~~~~a~ 323 (540)
|..-.+.+.+.+. .+..+......+|.+.|++.....+...+.+.+...+.. +|..++...... +..+.-.
T Consensus 172 A~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~-~~~~gL~ 249 (400)
T COG3071 172 ARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD-NGSEGLK 249 (400)
T ss_pred HHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc-ccchHHH
Confidence 9999999998863 567788899999999999999999999999998766543 455566554443 4444444
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR- 402 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 402 (540)
..|+..... .+-+...-.+++.-+.++|+.++|.++..+..+.+..|+.. . .-.+.+-++.+.-++..+.-.+.
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhC
Confidence 566655433 34455667788889999999999999999999887776622 2 22455677777777777665544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 403 GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
+.. ...+.+|-..|.+++.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.+++++....-.+|+
T Consensus 325 ~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 325 PED--PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 444 477889999999999999999999988776 69999999999999999999999999998764333333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=88.03 Aligned_cols=50 Identities=28% Similarity=0.402 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999888999999999999888874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-08 Score=97.10 Aligned_cols=335 Identities=16% Similarity=0.077 Sum_probs=263.7
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----hhCCCCCCHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKF----GDYGCVANQETYYFTI 239 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~~~g~~p~~~t~~~ll 239 (540)
|.-++.+...|+.|.++++...+.-+. +...|-+-...=-.+|+.+....+..+- ...|+..|...|-.=.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~ipt-----d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPT-----DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 344566666778888888888887765 7888888888778888888888887664 4578888999898888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLP--DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
..|-+.|..-.+..+....+..|+.- ...||+.-.+.|.+.+.++-|..+|....+- .|...+.-.-...+-+..|
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcC
Confidence 88988899888888888888887643 3567888888999999999999999988773 3544443333334455569
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
..+....+|++....-. -....|-.....+-..|++..|..++.+..+.... +...|-+-+..-..+.+++.|..+|.
T Consensus 565 t~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHH
Confidence 99999999999887633 34455667777778899999999999999887443 77889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 398 LMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 398 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+.... .|+...|.--+..---.++.++|.+++++.++. -|+ ...|..+-+.+-+.++++.|...|..-.+. -|
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP 716 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CP 716 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CC
Confidence 88775 678888877777777789999999999998886 344 467888888888899999998888765543 46
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
+..-...++.-+-.+.|..-+|..++++-+-++....
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 6666777776677778888999999998887765543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=86.36 Aligned_cols=49 Identities=43% Similarity=0.830 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 371 PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-08 Score=102.09 Aligned_cols=339 Identities=14% Similarity=0.139 Sum_probs=249.7
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
..|..|...+-..|+.+++...|-.+....++ |...|-.+.....+.|++++|.-.|.+.++.. +++...+--=
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-----d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~er 247 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-----DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYER 247 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHH
Confidence 45677888888889999999998888777776 88999999999999999999999999999875 5665566666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG----KIISWFCKGGKAKEAHVVYTLAREKK-MYPPQSVVAFLISSLC 313 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 313 (540)
...|-+.|+...|...|.++.....+.|..-+. .+++.|...++-+.|.+.++.....+ -..+...++.+...+.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 788999999999999999999875433333333 44566777788899999988877622 2334455666666666
Q ss_pred hCCchHHHHHHHHHHhHhcc---------------------------CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 314 QEDETVKLALDMLDDFSGEA---------------------------RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 314 ~~~~~~~~a~~~~~~m~~~~---------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
+. ..++.+......+.... ..++... --++-++.+....+....+.....+
T Consensus 328 ~~-~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 328 KN-KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred Hh-HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH
Confidence 66 78888888887776611 1122222 1233344455555555555555555
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 367 EG--PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 367 ~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
.. +.-+...|.-+..+|.+.|++.+|+.+|..+...-..-+...|-.+..+|...|..++|.+.++..+... +-+..
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D 484 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLD 484 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchh
Confidence 55 3445667888999999999999999999999988555578899999999999999999999999999863 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKD--------VGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
.--.|...|-+.|+.++|.+.+..|.. .+..|+..........|. +.|+.++-+.+...|+.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~-~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF-QVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 556677788899999999999999652 223444444444444444 67787776666666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-10 Score=108.67 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTG--- 413 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--- 413 (540)
..+|.++.++|.-.++.+.|++.|++.... .| ...+|+.+-.-+.....+|+|...|+....- |...|++
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYG 494 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYG 494 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHh
Confidence 344555555555555555555555544432 22 3444444444444444555555554444322 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 414 LMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
|.-.|.+.++++.|+-.|++..+.. +-+.+....+...+-+.|+.|+|++++++...
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 2333445555555555555444443 12333333344444444555555555555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-08 Score=97.02 Aligned_cols=318 Identities=10% Similarity=0.049 Sum_probs=236.8
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
.|..+.-..+|++....-++ ....|-.....+...|++..|..++.+..+.. +-+...|-..++......+++.
T Consensus 563 hgt~Esl~Allqkav~~~pk-----ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPK-----AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHH
Confidence 36667777777777776655 67788888888888899999988888887764 4467788888888888888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhH
Q 042609 251 AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFS 330 (540)
Q Consensus 251 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 330 (540)
|..+|.+.... .|+..+|.--+..-.-.+..++|.+++++..+ ..|+..-+..+++......++.+.|.+.|..=.
T Consensus 637 aR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 637 ARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 99888887765 46666666666666667888889888888776 357777777777777776677888877765433
Q ss_pred hccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 331 GEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 331 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
+. ++-.+-.|..+...=-+.|.+-.|..++++....+ +.|...|-..|.+=.+.|..+.|..++.+..+. ++-+...
T Consensus 713 k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~L 789 (913)
T KOG0495|consen 713 KK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLL 789 (913)
T ss_pred cc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchh
Confidence 21 22233346666666677888889999999887664 347788888899999999999999888887776 4446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV-DEYNKLIQSLC 489 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 489 (540)
|..-|....+.++-.++.+.+++. .-|+...-++...|....++++|.+.|.+..+.+ ||. .+|.-+. .|.
T Consensus 790 WaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fy-kfe 861 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFY-KFE 861 (913)
T ss_pred HHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHH-HHH
Confidence 888888888877766666655543 4477778888889999999999999999998764 554 4454454 444
Q ss_pred HhCCCHHHHHHHHHHHHHCC
Q 042609 490 LKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 490 ~~~g~~~~A~~l~~~m~~~g 509 (540)
.+.|.-++-.+++.+.....
T Consensus 862 l~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHhCCHHHHHHHHHHHhccC
Confidence 57887788888888887653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-08 Score=104.12 Aligned_cols=334 Identities=14% Similarity=0.127 Sum_probs=232.5
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCCH------HHHHHHHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY---GCVANQ------ETYYFTIEAL 242 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---g~~p~~------~t~~~ll~~~ 242 (540)
++...+..++..+...-......+-+...|.+...+...|++.+|...|...+.. ...+|. .+--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 3443444444444433333333367899999999999999999999999998654 122333 1223344555
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 321 (540)
-..++++.|.+.|..+++.. |. +..|--+..+....+...+|...+......+ -+.....++++-+......+..
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcc
Confidence 66779999999999998862 43 3334444444445577888998888877644 3333444566644444477777
Q ss_pred HHHHHHHhHhcc-CCCCcccHHHHHHHHH------------cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 322 ALDMLDDFSGEA-RKYAIKPFSSVIRSLC------------RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 322 a~~~~~~m~~~~-~~~~~~~~~~li~~~~------------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
|.+-|......- ..+|..+.-+|.+.|. ..+..++|+++|.+.+... +.|...-|-+--.++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 877666655432 2245555555555443 2345788999999998763 4588888889889999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
+.+|.++|.+..+.... +..+|-.+.++|...|++..|+++|+...+. .-.-+....+.|.+++.+.|.+.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999988542 4567899999999999999999999987664 345577889999999999999999999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHH--H---------------HhCCCHHHHHHHHHHHHHCCCC
Q 042609 468 EMKDVGVQPNVDEYNKLIQSL--C---------------LKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~~ll~~~--~---------------~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
........-...-||..+-.. + ..-+..+.|.++|.+|...+-.
T Consensus 741 ~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 741 KARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 877654333344455443221 1 0124578899999999877654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=115.85 Aligned_cols=270 Identities=14% Similarity=0.087 Sum_probs=163.0
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 042609 179 ALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKM 258 (540)
Q Consensus 179 ~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 258 (540)
.+|-.+...|.. ||-++|..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~----PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGIL----PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCC----CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence 445555555544 67777888888888777777777 7777766666777777777777777777766664
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh-ccCCCC
Q 042609 259 IETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG-EARKYA 337 (540)
Q Consensus 259 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~~~~~ 337 (540)
.|-..||..|..+|...||+..-..+=+.|.. ++..+... |.......++..+.- .+.-||
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~-Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDH-GVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhh-ccCcHHHHHHhhcccCcccchh
Confidence 56777777788888777776652221111111 11112222 333333344333221 112222
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
-...+....-.|.++.+.+++..+-... ..|-.+ +++-+... ....+++....+...-.|+..+|..++.
T Consensus 142 ---a~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 142 ---AENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLK 212 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHH
Confidence 2344555556666777766665553110 111111 23222221 2223333332222211478888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
+-.-+|+++.|..++.+|++.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+-...
T Consensus 213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 888888888888888888888888887777777766 7777888888888888888888888877665544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-09 Score=111.12 Aligned_cols=264 Identities=11% Similarity=0.014 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hCCChhHHHHHHHHHHHC
Q 042609 196 TVEILNELIALFSK-----LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS---------RRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~---------~~~~~~~a~~~~~~m~~~ 261 (540)
+...|...+.+-.. .+..++|++.|++..+.. +-+...|..+..++. ..+++++|...+++.++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555555554311 245778888888887765 566666666655443 223467888888888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc
Q 042609 262 GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP 340 (540)
Q Consensus 262 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 340 (540)
+ +-+...+..+...+...|++++|...|++..+.+ |+.. .+..+-..+... |++++|...+++..+..... ...
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l~P~~-~~~ 408 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMA-GQLEEALQTINECLKLDPTR-AAA 408 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC-hhh
Confidence 4 3456677777777888888888888888887765 5433 344444444444 88888888888877654331 222
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYA 419 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~ 419 (540)
+..++..+...|++++|...++++.....+-+...+..+..+|...|++++|...+.++... .|+ ....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33344456667888888888888775532224445666777788888888888888887655 333 334445555666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 420 NGGQMEEACEILNEAKKNH-SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
..| ++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666 47777777665531 12222222 44445566676666655 777754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-08 Score=91.49 Aligned_cols=259 Identities=14% Similarity=0.065 Sum_probs=202.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCC
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMY--PPQSVVAFLISSLCQED 316 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~ 316 (540)
..++-...+.+++.+-.+.....|+.-+...-+-...+.-...++++|+.+|+++.+.+.- -|..+|...+-..-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~--- 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN--- 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh---
Confidence 4455666678888888888888888666555555556677788999999999999887521 24456655553321
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
-...+.++.+-.-.-.+.-..|+..+.+-|+-.++.++|...|++..+.+. .....|+.|-.-|....+...|.+-+
T Consensus 311 --~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 --DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred --hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 112223332222222344467888888999999999999999999998653 35678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+..++-.. .|-..|-.|-++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|.+.|......|- .
T Consensus 388 RrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t 464 (559)
T KOG1155|consen 388 RRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T 464 (559)
T ss_pred HHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence 99998743 488999999999999999999999999998864 45789999999999999999999999999997763 3
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
+...+..|-..|- +.++..+|.+.|++.++
T Consensus 465 e~~~l~~LakLye-~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYE-ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 6688888888765 88899999999988765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-09 Score=96.17 Aligned_cols=202 Identities=13% Similarity=0.118 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
....+..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35677778888888888888888888887653 4456677777788888888888888888887764 245566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.+...|++++|.+.|++.......+.. ...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQP-----------------------------------ARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccc-----------------------------------hHHHHHHHHHHHHcCCHH
Confidence 777888888888887776653211111 112333344455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+|...+++..... +.+...+..+...+...|++++|...+++..+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus 153 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 153 KAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555432 123445555555666666666666666665554 22244444555555556666666666655554
Q ss_pred H
Q 042609 436 K 436 (540)
Q Consensus 436 ~ 436 (540)
+
T Consensus 231 ~ 231 (234)
T TIGR02521 231 K 231 (234)
T ss_pred h
Confidence 3
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-10 Score=112.96 Aligned_cols=263 Identities=14% Similarity=0.119 Sum_probs=183.5
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETY 235 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~ 235 (540)
++.-+|..+|..||..|+.+.|- +|..|+-.... .+...++.++.+...+++.+.+. .|...||
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp----v~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP----VREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhccccc----ccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 44557999999999999998887 98888753322 46788999999988888877765 5888999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAR-EKKMYPPQSVVAFLISSLCQ 314 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~ 314 (540)
..++.+|...|++..- +..++ -...++..+...|.-.....++..+. ..+..||..+...+ ..-
T Consensus 87 t~Ll~ayr~hGDli~f-e~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill---lv~ 151 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILF-EVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL---LVL 151 (1088)
T ss_pred HHHHHHHHhccchHHH-HHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH---HHH
Confidence 9999999999988762 22222 12233445666666666666655432 22334554433222 222
Q ss_pred CCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 042609 315 EDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAME 394 (540)
Q Consensus 315 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (540)
. |.++.+++++..+......- ++..+++-+... +...+++........-.|+..+|.+++.+-.-+|+++.|..
T Consensus 152 e-glwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 152 E-GLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred H-HHHHHHHHHHhhCCcccccc---hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 3 78888888887665332211 121223333332 23344444444332225899999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 395 MLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE 458 (540)
Q Consensus 395 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (540)
++.+|+++|+..+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.+.|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999998888877777766 88888899999999999999999999888888877555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-08 Score=96.04 Aligned_cols=289 Identities=13% Similarity=0.119 Sum_probs=202.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 207 FSKLGKGKAAFEVFNKFGDYGCVANQETYY--FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 207 ~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
|.++|+++.|++++.-+.+..-+.-...-+ +++..+..-.++..|.++-+..+... .-+......-......+|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 567788888888887776543222222222 22222223346777766666554432 122222222223344579999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
+|...|++....+.......||.-+.+ +..|+.++|++.|-.+... ..-+......+.+.|--..+..+|.+++.+.
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~--e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTA--EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccH--HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999887644444555554433 3348999999999887543 2224566777888888999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 365 ISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 365 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
... ++.|....+.|.+.|-+.|+-.+|.+.+-+--+. ++-+..|...|..-|....-+++|+..|++..-. .|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHH
Confidence 665 6678889999999999999999998887654443 4557888888989999999999999999987654 79999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYC-KLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 445 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
-|..+|..|. +.|++.+|+++|+..... ++-|......|++. |...| ..++.++-+++.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri-~~dlg-l~d~key~~kle 720 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI-AGDLG-LKDAKEYADKLE 720 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH-hcccc-chhHHHHHHHHH
Confidence 9999886654 689999999999998754 45577777777764 43555 356666655554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-09 Score=94.58 Aligned_cols=194 Identities=15% Similarity=0.042 Sum_probs=133.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+...+..+. +...+..+...|...|++++|++.|++..+.+ +.+...+..+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPD-----DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 344555777889999999999998876654 68899999999999999999999999998765 456778888899
Q ss_pred HHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCch
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGS-LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDET 318 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 318 (540)
.+...|++++|.+.++....... ......+..+...+...|++++|...|++..+.. |+ ...+..+...+... |+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~-~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLR-GQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHc-CC
Confidence 99999999999999999987532 2234566777888888999999999888877644 22 22333333333333 55
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
+++|...+++.... ...+...+..+...+...|+.++|..+++.+
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555554443 1122233333444444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-08 Score=103.66 Aligned_cols=268 Identities=10% Similarity=0.014 Sum_probs=181.7
Q ss_pred CCHHHHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 042609 230 ANQETYYFTIEALSR-----RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFC---------KGGKAKEAHVVYTLARE 295 (540)
Q Consensus 230 p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 295 (540)
.+...|...+++-.. .+.+++|...|++.++... -+...|..+..+|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 444555555554321 1346789999999988632 23455666655544 23458999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 296 KKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV 375 (540)
Q Consensus 296 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 375 (540)
.+ |+.......+.......|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+..+. +...
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 65 654444444443333349999999999999886532 4556788889999999999999999999886433 2223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS-PVTYHTLIRGYC 454 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 454 (540)
+..+...+...|++++|...+++..+....-+...+..+..+|...|+.++|...+.++... .|+ ....+.+...|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33445557778999999999999876632224455777788889999999999999997665 344 445566667778
Q ss_pred hcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 455 KLEEFDCALKLLNEMKD-VGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
..| ++|...++.+.+ .+-.+....+..++.++ .|+-+.+.. ++++.+.|.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~---~g~~~~~~~-~~~~~~~~~ 537 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA---HGEAIAEKM-WNKFKNEDN 537 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH---HhhhHHHHH-HHHhhccch
Confidence 777 588887777763 22334444455555543 345445544 488887753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-07 Score=93.89 Aligned_cols=287 Identities=15% Similarity=0.198 Sum_probs=200.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS-- 243 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~-- 243 (540)
.+...|++++|.+.++.-...- +| ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQI------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 4567799999999987655433 34 4566677788999999999999999999986 77777666665554
Q ss_pred --h--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 244 --R--RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA-KEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 244 --~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
. ....+...++|+++...- |.......+.-.+.....+ ..+..++..+..+|+++ +++. |..++.....
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~-lk~Ly~d~~K 158 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSN-LKPLYKDPEK 158 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHH-HHHHHcChhH
Confidence 1 235677888899887652 4443333332222222223 34556667777888533 2333 3334443355
Q ss_pred HHHHHHHHHHhHhc----c----------CCCCc--ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 042609 319 VKLALDMLDDFSGE----A----------RKYAI--KPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG-NAVFNSVIS 381 (540)
Q Consensus 319 ~~~a~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 381 (540)
.+-..+++..+... + -.|.. .++.-+...|...|++++|+...++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 55556666665432 1 11222 23466677788999999999999999886 344 667888889
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHH--HHHHHHH
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP------VTY--HTLIRGY 453 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~--~~li~~~ 453 (540)
.|-..|++.+|.+.++..+..... |-..-+-....+.++|++++|.+++....+.+..|-. -.| .-...+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654 7778888888899999999999999999887643322 122 4456788
Q ss_pred HhcCCHHHHHHHHHHHH
Q 042609 454 CKLEEFDCALKLLNEMK 470 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~ 470 (540)
.+.|++..|++.|..+.
T Consensus 316 ~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999988877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.1e-09 Score=94.22 Aligned_cols=237 Identities=11% Similarity=0.022 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 229 VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 229 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
..|-.--+.+.++|.+.|.+.+|.+.++.-++. .|-+.||..|-++|.+..+.+.|..+|.+-.+ ..|..+|+..-
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g 295 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLG 295 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhh
Confidence 344444567888899999999999999888776 57777888888999999999999999988766 35888887765
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
+.-..+.-++.++|.++|+...+.. ..++.....+...|.-.++++-|+..++++...|+. +...|+.+--+|.-.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 5544444478888888888877653 346666777777788888889999999998888875 66777777777777888
Q ss_pred hhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (540)
++-++.-|++....-..|+ ...|..|-......|++..|.+.|+-....+ .-+...+|.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 8888888887765533343 3456667777777888888888888877764 335577888888888888888888888
Q ss_pred HHHHHC
Q 042609 467 NEMKDV 472 (540)
Q Consensus 467 ~~m~~~ 472 (540)
+.....
T Consensus 453 ~~A~s~ 458 (478)
T KOG1129|consen 453 NAAKSV 458 (478)
T ss_pred HHhhhh
Confidence 877653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-07 Score=95.52 Aligned_cols=291 Identities=15% Similarity=0.142 Sum_probs=203.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhc---
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKV-GKIISWFCKG--- 280 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~--- 280 (540)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+...| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4457889999999999875543 33334456667888999999999999999999986 455554 4555554222
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHH
Q 042609 281 --GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAK 358 (540)
Q Consensus 281 --g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 358 (540)
.+.+....+|+++...- |.......+.-.+.....--..+..++..+...|++ .+|+.+-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25777889999887654 443333333222222212233455666667777644 45777777787777777777
Q ss_pred HHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 042609 359 TLLSKMISE----G----------PPPGNA--VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANG 421 (540)
Q Consensus 359 ~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 421 (540)
.++...... + -+|... ++.-+...|...|++++|++++++..++ .|+ +..|..-...|-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 777766532 1 134443 4466678888999999999999999988 566 56788888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHHhCC
Q 042609 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE------Y--NKLIQSLCLKAL 493 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~------~--~~ll~~~~~~~g 493 (540)
|++.+|.+.++...... .-|...-+-.+..+.++|++++|.+++....+.+..|.... | ...-.+|. +.|
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~-r~~ 319 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL-RQG 319 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH-HHh
Confidence 99999999999999876 34777777788889999999999999999887665433221 1 12223444 678
Q ss_pred CHHHHHHHHHHHHH
Q 042609 494 DWRTAEKLLEDMRL 507 (540)
Q Consensus 494 ~~~~A~~l~~~m~~ 507 (540)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-06 Score=83.59 Aligned_cols=330 Identities=13% Similarity=0.122 Sum_probs=167.3
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
+..=.+...+..|+.+|+......+. --..|...+-.=-..|++..|.++|++..+- .|+...|++.|+.-.+
T Consensus 114 ae~Emknk~vNhARNv~dRAvt~lPR-----VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAVTILPR-----VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Confidence 33444455566677777766655443 2245555555555667777777777766553 5777777777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCchHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ---EDETVKL 321 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~ 321 (540)
-+.++.|..+|+..+-. .|+..+|--....=.++|.+..|..+|+...+.- .+...-..++.++.. ....++.
T Consensus 187 ykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL--GDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred hhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766543 4666666666666666666666666666554321 111111111111111 0111222
Q ss_pred HHHHHHHhHh-------------------------------------------ccCCCCcccHHHHHHHHHcCCCHHHHH
Q 042609 322 ALDMLDDFSG-------------------------------------------EARKYAIKPFSSVIRSLCRMKDVHGAK 358 (540)
Q Consensus 322 a~~~~~~m~~-------------------------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~ 358 (540)
|.-+|+-... .....|-.+|--.+..-...|+.+...
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHH
Confidence 2222211110 001223444555555555566666666
Q ss_pred HHHHHHHHCCCCCCHH-------HHHHHHHH---HHhcCChhHHHHHHHHHHHC--------------------------
Q 042609 359 TLLSKMISEGPPPGNA-------VFNSVISA---YSKAGDMTPAMEMLKLMRSR-------------------------- 402 (540)
Q Consensus 359 ~~~~~m~~~g~~p~~~-------~~~~li~~---~~~~g~~~~A~~~~~~m~~~-------------------------- 402 (540)
++|++.... ++|-.. .|.-+=-+ =....+.+.+.++|+...+.
T Consensus 343 e~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 343 ETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccH
Confidence 666666544 333111 11111111 11234444444554444331
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 403 ----------GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 403 ----------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
|..|-..+|...|..=.+.++++.+..++++.++-+ +-|..+|......-...|+.+.|..+|.-.+..
T Consensus 422 ~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 422 GARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 334555555555555555566666666666666554 234455555555555666666666666665532
Q ss_pred C-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 473 G-VQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 473 g-~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
. +.-....|-+.|.- -...|.++.|..+++++++.
T Consensus 501 p~ldmpellwkaYIdF-Ei~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDF-EIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cccccHHHHHHHhhhh-hhhcchHHHHHHHHHHHHHh
Confidence 1 11122333344432 22556666777777666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=101.29 Aligned_cols=243 Identities=19% Similarity=0.206 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CC-CCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHC-----CC--
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDY-----GC-VANQE-TYYFTIEALSRRKIFDWAWSVCEKMIET-----GS-- 263 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-- 263 (540)
.+...|...|...|++++|+.+++...+. |. -|... ..+.+...|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555889999999999999999887653 20 12222 3344666777888888888888887653 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc-ccHH
Q 042609 264 LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI-KPFS 342 (540)
Q Consensus 264 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~ 342 (540)
+.-..+++.|..+|.+.|++++|...+++..+ +++..... ..+.+ ..++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----------------------------I~~~~~~~-~~~~v~~~l~ 329 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----------------------------IYEKLLGA-SHPEVAAQLS 329 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------HHHHhhcc-ChHHHHHHHH
Confidence 11234566677778888888888877766543 11110000 00001 1144
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCC-CH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISE---GPPPG----NAVFNSVISAYSKAGDMTPAMEMLKLMRSR-----G-LKP-DV 408 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~ 408 (540)
.+...|+..+++++|..+++...+. -+.++ ..+++.|-..|.+.|++++|+++|++.... | ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5555666667777776666654321 11122 347888888888899999999888876543 1 112 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKN----HS-RLSP-VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
..++.|-..|.+.++.++|.++|.+.... |. .|+. .+|..|...|...|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 56777778888888888888888765432 21 2332 678888888888888888888877665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-07 Score=85.10 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=158.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (540)
+.-+|+.-.|..-|+..+.....+.. .|-.+-..|... .+.++....|+.....+.. +..+|..-...+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~-~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADE-NQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhh-hccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 45577888888888888775532222 244444455555 7788888888887765433 55667777777778888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
|..=|++.+...+ -+...|--+..+..+.+++++++..|++.+++ ++--...|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999998887532 25667777777777888999999999998887 333467888888999999999999999998887
Q ss_pred CCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 437 NHSR-------LSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 437 ~g~~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
.... +.+....+++..-.+ +++..|.+++.+..+.+.. ....|-.|-..-. +.|+.++|+++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~l-Q~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFEL-QRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 5311 222333333333333 8899999999999876432 3455666665544 78899999999997654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-08 Score=90.37 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 347 (540)
.--+-+.++|.+.|.+.+|++.|+...+.. |-..||..+-..|-+- .+...|+.++.+-.+. .+.++.-..-+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRI-DQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 334578889999999999999999887754 6677888888888777 8999999999887654 23344334556777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
+-..++.++|.++++...+. .+.++....++...|.-.++.+-|+.++.++.+-|+. +...|+.+--+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 78889999999999999876 3457777888888899999999999999999999987 888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSP--VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+.-|.+....--.|+. ..|..|-...+..|++.-|.+.|+-.+..+-. +...+|.|- .+..+.|++++|..+++..
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLa-vL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLA-VLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHH-HHHhhcCchHHHHHHHHHh
Confidence 9999998876444543 57888888888999999999999998866432 456677665 4556999999999999988
Q ss_pred HHCCC
Q 042609 506 RLKGL 510 (540)
Q Consensus 506 ~~~g~ 510 (540)
.....
T Consensus 456 ~s~~P 460 (478)
T KOG1129|consen 456 KSVMP 460 (478)
T ss_pred hhhCc
Confidence 76543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-06 Score=85.86 Aligned_cols=284 Identities=13% Similarity=0.046 Sum_probs=221.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
++...-.-..-+...+++++..++++...+.. ++....+..-|.++...|+..+-.-+=.+|++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 66667777777888999999999999998764 677777777788888999888777777777775 4556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (540)
.|.-.|+..+|.+.|.+....+ |. ...|-..-..+... |..++|...+....+.-.. .-..+--+.--|.+.+..
T Consensus 321 YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence 9999999999999999876543 22 34566666666665 8899999888776543111 122244566678889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHhcCCHHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----G-LK-PDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~-p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
+.|.+.|.+.... .+-|....+-+--.....+.+.+|..+|+..... + -. -...+++.|-.+|.+.++.++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998775 3446777777777777889999999999887632 1 11 24567899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
..+++.+... +-+..+|.++.-.|...|+++.|.+.|++.+- +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998874 56889999999999999999999999999884 4788888888876543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-06 Score=78.32 Aligned_cols=324 Identities=15% Similarity=0.071 Sum_probs=204.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
.+++...|+.+|+........ +...|-.-+..=.++.+++.|..++++....=...|. .|---+..--..|++.
T Consensus 85 sq~e~~RARSv~ERALdvd~r-----~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-----NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccH
Confidence 346777899999998876554 8899999999999999999999999998875322233 3334444555679999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
.|.++|+.-.+- .|+...|++.|+.=.+...++.|..+|+...-- -|+..+|.-...-=-+. |....+..+|...
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~-g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH-GNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence 999999998875 799999999999999999999999999998763 38888876655444443 7788887777765
Q ss_pred HhccCC--CCcccHHHHHHHHHcCCCHHHHHHH--------------------------------------------HHH
Q 042609 330 SGEARK--YAIKPFSSVIRSLCRMKDVHGAKTL--------------------------------------------LSK 363 (540)
Q Consensus 330 ~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~--------------------------------------------~~~ 363 (540)
.+.-.. .+...|.+...-=.++..++.|.-+ ++.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 432100 0011111111111112222222222 222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHHH
Q 042609 364 MISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY-------TYTGLMSGY---ANGGQMEEACEILNE 433 (540)
Q Consensus 364 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~A~~~~~~ 433 (540)
++.. -+-|-.+|--.+..-...|+.+...++|+..... ++|-.. .|--+=-++ ....+++.+.++++.
T Consensus 314 ~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222 2346777877788888889999999999988765 333211 111111111 124455555555544
Q ss_pred HHHC------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 434 AKKN------------------------------------HSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 434 m~~~------------------------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
.++. |.-|-..+|...|..-.+.++++.+..+|++.++.+.. |
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~ 470 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-N 470 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-h
Confidence 4331 22455566666666666666777777777776665422 3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 478 VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 478 ~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..+|.... .+-...|+++.|..+|+-.+..
T Consensus 471 c~~W~kya-ElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 471 CYAWSKYA-ELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred hHHHHHHH-HHHHHhhhHHHHHHHHHHHhcC
Confidence 44444433 2334566777777777666543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-07 Score=91.96 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=121.9
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC--
Q 042609 339 KPFSSVIRSLCRMKDVHGAKTLLSKMISE-----GP-PPGNA-VFNSVISAYSKAGDMTPAMEMLKLMRSR---GLKP-- 406 (540)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p-- 406 (540)
.+++.|-.+|.+.|++++|...+++..+. |. .|.+. -++.++..|+..+++++|..+++...+. -..+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 44667777788888888877777665421 22 23333 3566777889999999999999876432 1122
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC
Q 042609 407 --DVYTYTGLMSGYANGGQMEEACEILNEAKKN----HS--RLS-PVTYHTLIRGYCKLEEFDCALKLLNEMK----DVG 473 (540)
Q Consensus 407 --~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g 473 (540)
-..+++.|-..|...|++++|.++++.++.. +. .+. ...++.|...|.+.+.+++|.++|.+.. ..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 2467999999999999999999999988753 11 222 3577889999999999999999998754 333
Q ss_pred CC-C-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 474 VQ-P-NVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 474 ~~-p-~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.. | ...+|..|...|- +.|+++.|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~-~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYR-AQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHH-HcccHHHHHHHHHHHH
Confidence 21 2 3467788887775 8999999999998875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-06 Score=78.68 Aligned_cols=310 Identities=12% Similarity=0.019 Sum_probs=212.2
Q ss_pred HhcCChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 042609 208 SKLGKGKAAFEVFNKFGD-YGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEK-VGKIISWFCKGGKAKE 285 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~ 285 (540)
+..++...|...+-.+.. .-++-|+.....+.+.+...|+.++|...|++....+ |+..+ .....-.+.+.|+.++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhh
Confidence 345555556555554433 3356678888889999999999999999999887653 43322 2222334567788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI 365 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (540)
...+...+.... .-....|-.-...++.. ++++.|+.+-++-.+.+. .+...|-.=...+...+++++|.-.|+..+
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~-K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDE-KKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhh-hhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 777777665433 11222333333333444 788888888877765432 244445555567788999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 366 SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLM-SGYA-NGGQMEEACEILNEAKKNHSRLSP 443 (540)
Q Consensus 366 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~ 443 (540)
... +-+...|..|+..|.-.|++.+|.-+-++..+. +.-+..+.+.+- ..|. ....-++|..+++.-.+. .|+-
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 652 357889999999999999999998877665543 223455555442 2222 233457899998887765 4553
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 042609 444 -VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRA 522 (540)
Q Consensus 444 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a 522 (540)
...+.+...+...|..+.+..++++.... .||....+.|-+.+. ....+.+|+..|......+.+ .-.-+++
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~-A~Ne~Q~am~~y~~ALr~dP~----~~~sl~G 510 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR-AQNEPQKAMEYYYKALRQDPK----SKRTLRG 510 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCcc----chHHHHH
Confidence 56778888999999999999999998864 688888888888776 666899999999988765332 3455666
Q ss_pred HHHHHHhhhhc
Q 042609 523 VKELEEDAIEN 533 (540)
Q Consensus 523 ~~~l~~~~~~~ 533 (540)
+..|++..-++
T Consensus 511 l~~lEK~~~~~ 521 (564)
T KOG1174|consen 511 LRLLEKSDDES 521 (564)
T ss_pred HHHHHhccCCC
Confidence 77777765543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-06 Score=81.58 Aligned_cols=308 Identities=11% Similarity=-0.050 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH--
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYG-CVANQET-YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK-- 272 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-- 272 (540)
...|..+...+...|+.+.+...+.+..+.. ..++... .......+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4556666666666777777666666554321 1122211 2222334556778888888888777652 233333332
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcC
Q 042609 273 -IISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRM 351 (540)
Q Consensus 273 -li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 351 (540)
+.......+..+.+.+.++. .....|+......++.......|++++|...+++..+... .+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 11111223444555555443 1122343333333333333334788888888888776542 2345567777788888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 042609 352 KDVHGAKTLLSKMISEGP-PPGN--AVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPDVYTY-T--GLMSGYANGGQM 424 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~ 424 (540)
|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888775432 1232 2355677778888888888888888754322 1122111 1 233333344433
Q ss_pred HHHHHH--H-HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHhCC
Q 042609 425 EEACEI--L-NEAKKNH-SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ-------PNVDEYNKLIQSLCLKAL 493 (540)
Q Consensus 425 ~~A~~~--~-~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------p~~~~~~~ll~~~~~~~g 493 (540)
..+.+. + ....... .............++...|+.++|..+++.+...... ........+........|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 332222 1 1111110 0111222235667778888999999999888742211 111111222222223678
Q ss_pred CHHHHHHHHHHHHHC
Q 042609 494 DWRTAEKLLEDMRLK 508 (540)
Q Consensus 494 ~~~~A~~l~~~m~~~ 508 (540)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-07 Score=89.18 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=150.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
+.+.-.|++..++.-.+ .....-..+......+.+++...|+++.+ ..++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886555 32222123445566677888888886643 34443333 566655555554443334444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
.+..-+++.......+...++..+...+....|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454444443333333344455554444444458888888877542 24556667788888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 365 ISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR 440 (540)
Q Consensus 365 ~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (540)
.+. ..|. +...+..++.. ...+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 764 3333 33334444332 34688888888887665 45677778888888888888888888888877654 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 042609 441 LSPVTYHTLIRGYCKLEEF-DCALKLLNEMKDV 472 (540)
Q Consensus 441 p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 472 (540)
-++.+...++......|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3556666677777777776 6677777777753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-06 Score=78.95 Aligned_cols=339 Identities=14% Similarity=0.072 Sum_probs=208.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-QETYYFT 238 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-~~t~~~l 238 (540)
+....+-+.+.+.+++|++.+++..+. .|| ++-|.....+|...|+++++++--.+.++. .|+ +-.+.--
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RR 189 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRR 189 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHH
Confidence 444566777888899999999887763 267 778888888899999999998888887764 354 3345555
Q ss_pred HHHHHhCCChhHHHHHH----------------------HH---------HHHCC--CCCCHHHHHHHHHHHHh------
Q 042609 239 IEALSRRKIFDWAWSVC----------------------EK---------MIETG--SLPDSEKVGKIISWFCK------ 279 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~----------------------~~---------m~~~g--~~p~~~~~~~li~~~~~------ 279 (540)
.+++-..|++++|+.=. .+ |.+.+ +.|.....++....+..
T Consensus 190 A~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 66777778877654211 10 00001 22443333333332211
Q ss_pred --cC--------------------CHHHHHHHHHHHHH-cCCCCCHH---------HHHHHHHH-HHhCCchHHHHHHHH
Q 042609 280 --GG--------------------KAKEAHVVYTLARE-KKMYPPQS---------VVAFLISS-LCQEDETVKLALDML 326 (540)
Q Consensus 280 --~g--------------------~~~~A~~~~~~m~~-~~~~p~~~---------~~~~ll~~-~~~~~~~~~~a~~~~ 326 (540)
.+ .+..|...+.+-.. ....++.. .-..++.+ +.--.|+...|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 00 01111111111000 00011111 00111111 111126666677777
Q ss_pred HHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042609 327 DDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP 406 (540)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 406 (540)
+........++ ..|--+..+|....+.++....|+...+.+.. |..+|..-.+++.-.+++++|..=|++.+.....
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 76665543322 22777777888888889999999988876432 5556666666777778899999999888876322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH-
Q 042609 407 DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-----VQPNVDE- 480 (540)
Q Consensus 407 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~- 480 (540)
++..|-.+-.+..+.+++++++..|++.++. ++-.+..|+.....+...+++++|.+.|+..++.. +..+...
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 4566666666666888999999999999886 45566889999999999999999999999887532 1112221
Q ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 481 -YNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 481 -~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
--.++. + +-.+++..|.+++.+..+...+-+
T Consensus 506 V~Ka~l~-~-qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 506 VHKALLV-L-QWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred hhhhHhh-h-chhhhHHHHHHHHHHHHccCchHH
Confidence 222221 1 234789999999999887654433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-06 Score=81.08 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 042609 173 GKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAW 252 (540)
Q Consensus 173 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (540)
..+.+..-+.++........ .-....|..+...|...|+.++|+..|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555554222100 0124568888888889999999999999888764 456788888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 253 SVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 253 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
..|+..++.. +-+..++..+..++...|++++|.+.|+...+.+ |+.... .+...+....++.++|...|.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999988763 2346677778888888899999999998888755 443321 11111223336788888888664432
Q ss_pred cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042609 333 ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-PP-----PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG 403 (540)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (540)
. .++...+ .+ .....|+...+ ..+..+.+.. .. .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2222211 22 22234444433 2444443210 00 122456666666777777777777777766553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-06 Score=83.88 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=139.5
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+...|+.++|...|+...+..++ +...|+.+...|...|++++|++.|++..+.. +-+..+|..+..++...
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPD-----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3556779999999999999988775 88999999999999999999999999998764 34577888888899999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|++++|.+.++...+.. |+..........+...++.++|...|++..... .++ .|...+..+.. |+..++ +.
T Consensus 146 g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~--~~~~~~~~~~l--g~~~~~-~~ 217 (296)
T PRK11189 146 GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKE--QWGWNIVEFYL--GKISEE-TL 217 (296)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc--ccHHHHHHHHc--cCCCHH-HH
Confidence 99999999999998864 443222222233456788999999997755432 232 22222322222 344333 24
Q ss_pred HHHhHhc---cCC---CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 326 LDDFSGE---ARK---YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF 376 (540)
Q Consensus 326 ~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 376 (540)
+..+... ... ....+|..+...+.+.|++++|...|++....++ ||-+-+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~ 273 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEH 273 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHH
Confidence 4444321 111 1234688899999999999999999999988653 344433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-05 Score=77.55 Aligned_cols=292 Identities=12% Similarity=0.001 Sum_probs=176.3
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----h
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS----R 244 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~----~ 244 (540)
..++.+.+...+....+..+.. ++ ..........+...|++++|.+++++..+.. +.|...+.. ...+. .
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 18 LGGERPAAAAKAAAAAQALAAR---ATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF 92 (355)
T ss_pred hcCCcchHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc
Confidence 3456666666666655544321 12 2233334445678899999999999988753 445545542 22222 2
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLA 322 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a 322 (540)
.+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+.. |+.. .+..+-..+... |++++|
T Consensus 93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~-g~~~eA 167 (355)
T cd05804 93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQ-GRFKEG 167 (355)
T ss_pred ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHc-CCHHHH
Confidence 4555555555554 1122333 3445566778899999999999999999865 5544 444454555555 999999
Q ss_pred HHHHHHhHhccCC-CCc--ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH
Q 042609 323 LDMLDDFSGEARK-YAI--KPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PPGNAVF-N--SVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 323 ~~~~~~m~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~A~~~ 395 (540)
...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 9999988765322 222 2355688889999999999999999864322 1222211 1 233334445544443333
Q ss_pred --HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhcCCHHHHH
Q 042609 396 --LKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR---L-----SPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 396 --~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~---p-----~~~~~~~li~~~~~~g~~~~A~ 463 (540)
+........ ............++...|+.++|..++..+...... - .........-++...|+.++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 211111111 111222235666778899999999999998764322 0 1122233334566899999999
Q ss_pred HHHHHHHH
Q 042609 464 KLLNEMKD 471 (540)
Q Consensus 464 ~~~~~m~~ 471 (540)
+.+.+...
T Consensus 328 ~~L~~al~ 335 (355)
T cd05804 328 ELLGPVRD 335 (355)
T ss_pred HHHHHHHH
Confidence 99988774
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.1e-05 Score=73.43 Aligned_cols=137 Identities=18% Similarity=0.097 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILN--------EAKKNHSRLSPVTYHTLIRGYCKLEEFD 460 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~ 460 (540)
..+|.+++...-+....-.....-.++......|+++.|.+++. .+.+.+..| .+..+++..|.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCc
Confidence 44555555554444222223455555666777889999998888 555554434 45556777777877777
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHHH
Q 042609 461 CALKLLNEMKDV--GVQPNVDEYNKLIQ---SLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELEE 528 (540)
Q Consensus 461 ~A~~~~~~m~~~--g~~p~~~~~~~ll~---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~~ 528 (540)
-|..++.+.... .-.+.....++++. .+-.+.|.-++|..+++++.+.+. +|..+. .++.+++.++-
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARLDP 507 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcCH
Confidence 777777665421 00122223333332 334477999999999999988643 344444 78888877653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-06 Score=80.89 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=209.4
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
.-+...+++++..++++.+.+..+ +....+-.-|..+...|+..+-..+=.+|.+.- |-.+.+|-.+.--|.-.
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dp-----fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDP-----FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCC-----CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 344455788899999998888766 477888888889999999999888888888763 66788999999888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|+..+|++.|.+....+. .=...|-.+...|+-.|.-+.|...+...-+.-..........-+ .|.+. +..+.|.++
T Consensus 326 ~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm-ey~~t-~n~kLAe~F 402 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM-EYMRT-NNLKLAEKF 402 (611)
T ss_pred cCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH-HHHHh-ccHHHHHHH
Confidence 999999999998765431 123478888999999999999998887665422111112222111 22223 789999999
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE--GPPP----GNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
|.+..... +.|....+-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|-.+|.+.+++++|+..+++.
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99877642 345666777777777788999999999887622 0111 2346788899999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
..... -|..++.++.-.|...|+++.|.+.|.+.... .|+-.+-..++..+
T Consensus 482 L~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 482 LLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 87743 38899999999999999999999999998875 68877766666644
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00015 Score=72.16 Aligned_cols=360 Identities=12% Similarity=0.056 Sum_probs=216.0
Q ss_pred cchhhhHhhcc---cccchHHHHHHHHHhhcChhhHHHHHHHHHHhccc--CCCCCCHHHHHHHHHHHHhcCChH---HH
Q 042609 145 LGENLVCFFKW---VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEK--EKGVLTVEILNELIALFSKLGKGK---AA 216 (540)
Q Consensus 145 ~~~~ll~~~~w---~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~---~A 216 (540)
.....++.|+- +.+...+..|..+++.++.++|.+.+..+...... ..+.-+-..|..+-...+++-+.- ..
T Consensus 153 lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 153 LPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 33455555543 66777888888899999998888877665432211 112235677888777777654433 33
Q ss_pred HHHHHHHhhCCCCCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------
Q 042609 217 FEVFNKFGDYGCVANQ--ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG-------------- 280 (540)
Q Consensus 217 ~~~f~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------------- 280 (540)
..+++.+... -+|. ..|++|.+-|.+.|.++.|.++|++.+..- .+..-+..+.+.|+.-
T Consensus 233 daiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~ 308 (835)
T KOG2047|consen 233 DAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADE 308 (835)
T ss_pred HHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455555443 2443 568999999999999999999999887752 3333444444554431
Q ss_pred --C------CHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc---
Q 042609 281 --G------KAKEAHVVYTLAREKKM-----------YPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI--- 338 (540)
Q Consensus 281 --g------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--- 338 (540)
| +++-...-|+.+..+.. .-+...|..-+.. .. |+..+....|.+.... +.|-.
T Consensus 309 ~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e-~~~~~~i~tyteAv~~-vdP~ka~G 384 (835)
T KOG2047|consen 309 ESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YE-GNAAEQINTYTEAVKT-VDPKKAVG 384 (835)
T ss_pred cccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hc-CChHHHHHHHHHHHHc-cCcccCCC
Confidence 1 22333444554444321 1112223222221 12 5666667777766543 22221
Q ss_pred ---ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----------
Q 042609 339 ---KPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG---NAVFNSVISAYSKAGDMTPAMEMLKLMRSR---------- 402 (540)
Q Consensus 339 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 402 (540)
..|..+...|-..|+++.|..+|++..+...+.- ..+|..-.++=.+..+++.|+++++....-
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 2388888999999999999999999876533211 234555555555677888888887765422
Q ss_pred -CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 403 -GLKP------DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 403 -g~~p------~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
+.++ +...|...+..--..|-++....+++++++..+ .++..-......+-.+.-++++.++|++-+..=-.
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1111 122344444444456788888889999888764 23433333333444566788888888876543223
Q ss_pred CCH-HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 476 PNV-DEYNKLIQSLCL--KALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 476 p~~-~~~~~ll~~~~~--~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
|+. ..|+..+.-+.. .+...+.|..+|++.++ |..|..
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 443 345555554443 24568889999999988 666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-05 Score=74.33 Aligned_cols=290 Identities=9% Similarity=-0.062 Sum_probs=202.8
Q ss_pred HHHhhcChhhHHHHHHHH--HHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHH
Q 042609 167 AICSSVGKKEVYALWDIV--KEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQET-YYFTIEALS 243 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t-~~~ll~~~~ 243 (540)
+.|-.++...|...|-.+ ...-+. |+.....+...+...|+.++|+..|++....+ |+..+ ...-.-.+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~-----NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRC-----NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCc-----cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHH
Confidence 444445544555444333 333332 89999999999999999999999999987643 43221 111223345
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
+.|+++....+...+.... ..+...|-.-........++..|..+-++..+.+ |...--..|=+.+....++.++|.
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHH
Confidence 6778887777777665432 1233334444445556778889988888776644 444444444444455559999999
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCChhHHHHHHHHHHH
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI-SAYSK-AGDMTPAMEMLKLMRS 401 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~ 401 (540)
-.|+...... +.+...|..++..|...|++.+|...-+...+. ++-+..+.+.+- ..+.- -.--++|..+++.-.+
T Consensus 355 IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 355 IAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 9999876542 346788999999999999999998887776654 344555555442 22222 2235788888887665
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 402 RGLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 402 ~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
. .|+ ....+.+...|...|..+++..++++.... .||....+.|.+.+...+.+.+|++.|......
T Consensus 433 ~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 433 I--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred c--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5 555 456677778888999999999999998886 689999999999999999999999999988865
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.6e-06 Score=70.93 Aligned_cols=201 Identities=13% Similarity=0.074 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
.+.-.|.-+|...|++..|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++.++.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 345566667888888888888888887765 4456677777778888888888888888877763 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
|..|++++|.+.|++....-..+.. ..+|..+.-+..+.|+.+.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~-----------------------------------s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEP-----------------------------------SDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCc-----------------------------------chhhhhhHHHHhhcCCchhH
Confidence 7778888887777776653221111 22344444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
...|++..+.... ...+...+.....+.|++-.|..+++.....+. ++..+.-..|+.-...|+.+.+-+.=.++.+.
T Consensus 159 ~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 159 EEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555544221 233444555555566666666666655555543 55555555555555566655555555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.8e-05 Score=75.18 Aligned_cols=190 Identities=11% Similarity=-0.020 Sum_probs=115.7
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI 247 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (540)
++..|+.++|......-.....+ +.++|..+.-.+....++++|++.|+.....+ +-|...|.-+--.-++.++
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-----S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-----SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-----cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence 35567778888777665554444 77889988888888889999999998887765 4566666666666666777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH------HhCCchHH
Q 042609 248 FDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQSVVAFLISSL------CQEDETVK 320 (540)
Q Consensus 248 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~------~~~~~~~~ 320 (540)
++.....-..+.+.. +.....|..+.-++.-.|+...|..+.++..+... .|+...+.-...-+ .+. |..+
T Consensus 125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA-GSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc-ccHH
Confidence 776666666666542 23445566666777777777777777777765442 34444443322222 222 5555
Q ss_pred HHHHHHHHhHhccCCCCccc-HHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042609 321 LALDMLDDFSGEARKYAIKP-FSSVIRSLCRMKDVHGAKTLLSKMISE 367 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (540)
+|++.+..-... ..|... -..-...+.+.+++++|..++..+...
T Consensus 203 ~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 203 KALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 555555443221 011111 122334455666666666666666653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.9e-06 Score=71.14 Aligned_cols=193 Identities=14% Similarity=0.009 Sum_probs=151.8
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
|.-.+...|+...|..-+++..+..+. +..+|..+...|-+.|..+.|.+.|++..+.. +-+....|.--..+|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 334778899999999999999998886 88999999999999999999999999998865 556778888888999
Q ss_pred hCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCchHHH
Q 042609 244 RRKIFDWAWSVCEKMIETG-SLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~ 321 (540)
..|++++|.+.|++....- +.--..+|..+.-+..+.|+.+.|...|++..+.+ |+. .....+....+.. |++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~-~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKA-GDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhc-ccchH
Confidence 9999999999999998763 22235678888888999999999999999988765 332 3334455555555 77888
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
|..+++.....+. ++..+.-..|..-...|+.+.+.+.=.++..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8887777776654 5566666666666677777776666555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=61.00 Aligned_cols=32 Identities=34% Similarity=0.637 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 368 GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 368 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=60.66 Aligned_cols=29 Identities=48% Similarity=0.788 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
.||..||++||.+||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-05 Score=71.33 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=162.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------------CCCCCH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY--------------GCVANQ 232 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------------g~~p~~ 232 (540)
.+.+.|++++|..++..+.+... ++...|-.|.-.+.-.|.+.+|..+-.+..+. |-....
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~-----~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDD-----APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCC-----CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 34566888888888887766322 46677777777777778888877766553221 000001
Q ss_pred HHHH-----------HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 233 ETYY-----------FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI-ISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 233 ~t~~-----------~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
.++. ++....--.-++++|+++|...+..+ |+-...|.- .-+|.+..-++-+.++++-..+.- |
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--p 216 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--P 216 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--C
Confidence 1111 11111112235667777777776542 343344432 235666666777777666555432 4
Q ss_pred CHHH-HHHHHHHHHhC-CchHHHHHHHHHHhHhccC--------------------------CCC-----cccHHHHHHH
Q 042609 301 PQSV-VAFLISSLCQE-DETVKLALDMLDDFSGEAR--------------------------KYA-----IKPFSSVIRS 347 (540)
Q Consensus 301 ~~~~-~~~ll~~~~~~-~~~~~~a~~~~~~m~~~~~--------------------------~~~-----~~~~~~li~~ 347 (540)
|... .|......++. +|+..++ -.+++...+- -|. ...-..++-.
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~--E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAED--EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHH--HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheee
Confidence 3322 22222221111 1221111 1111111100 000 0112233444
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H----HhcCChhHHHHHHHHHHHCCCCC----------------
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA-Y----SKAGDMTPAMEMLKLMRSRGLKP---------------- 406 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~----~~~g~~~~A~~~~~~m~~~g~~p---------------- 406 (540)
|.+.+++.+|..+.+++.- ..|-......++.+ + .....+.-|.+.|+..-+.+..-
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 5677888888777666531 12222222222211 1 11112344444444433332211
Q ss_pred ----CHHHH---------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 042609 407 ----DVYTY---------------TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY-HTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 407 ----~~~t~---------------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 466 (540)
|+.+| -.+..+++..|++.+|.++|-++....++ |..+| ..|.++|.+.+..+-|+.++
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 11112 22445556667777888887766654444 34444 44557777888887777665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 467 NEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 467 ~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
-++-. .-+..+...+|..-|-+.+.+--|-+-|+.+......|.
T Consensus 452 lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 452 LKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 54432 334555666666556577777777777777776655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-05 Score=71.67 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=92.4
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF- 237 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~- 237 (540)
.-++..+-.+.+..++++|++++..-.+..++ +......|...|-...++..|-..++++-.. -|...-|..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 34556666666666666666666655554443 5566666666666666666666666666543 244333332
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW--FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 315 (540)
-...+-+.+.+..|.++...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+..-.-.++.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 123344555666666666655432 211111111111 123445555555555433211 111111111111222
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG 368 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 368 (540)
|+++.|.+-|+...+.+.--....|+..+..| +.|+.+.|++...++++.|
T Consensus 158 -gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 158 -GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERG 208 (459)
T ss_pred -ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhh
Confidence 55666666665555433222334454433332 3455556666655555554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00048 Score=68.75 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=155.6
Q ss_pred CChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCC
Q 042609 246 KIFDWAWSVCEKMIETGSLPD------SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ---SVVAFLISSLCQED 316 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~ 316 (540)
|+..+-..+|.+.++. +.|. ...|..+.+.|-..|+++.|..+|++..+-...--. .+|..--..=.+.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh- 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH- 438 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh-
Confidence 4555666667766654 2232 345778888899999999999999987765432221 2222222222233
Q ss_pred chHHHHHHHHHHhHhccCCC-----------------CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKY-----------------AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSV 379 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 379 (540)
.+++.|+++++........+ +...|...++.--..|-++....+++++.+..+..-....|-
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny- 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY- 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-
Confidence 66777887776654321111 122266666666677888888889998887655422222221
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRGLKPDV-YTYTGLMSGYAN---GGQMEEACEILNEAKKNHSRLSPV--TYHTLIRGY 453 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~ 453 (540)
...+-.+.-++++.+++++-...--.|++ ..|+..+.-+.+ ...++.|..+|++..+ |++|... .|-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 11233455677888777665444334554 356666665543 3478999999999998 6776542 233333333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 454 CKLEEFDCALKLLNEMKDVGVQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
-+.|....|+.++++.... +.+. ...||..|.-...--| ...-..++++.++. -||....
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~--Lp~~~~r 658 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIES--LPDSKAR 658 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHh--CChHHHH
Confidence 4578888899999886643 3322 2456666655443333 34455666666664 4554444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00044 Score=69.15 Aligned_cols=325 Identities=14% Similarity=0.060 Sum_probs=213.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..+++....+..+.+.+..+. ...+.....-.+...|+-++|....+.-...+ ..+.+.|+.+.-.+-...+++
T Consensus 19 E~kQYkkgLK~~~~iL~k~~e-----HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPE-----HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCc-----cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHH
Confidence 346677777777777764443 33455555555667899999999998887754 467788998888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
+|.+.|....+.+ +.|...+.-|.-.-.+.|+++.....-..+.+.. ......|..+..+.... |+...|..++++.
T Consensus 93 eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef 169 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL-GEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999875 3566777766666777888888877776666543 22345566666666665 9999999999998
Q ss_pred Hhcc-CCCCcccHHHHH------HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 330 SGEA-RKYAIKPFSSVI------RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 330 ~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
.+.. ..|+...|.-.. ....+.|..+.|.+.+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 8765 245555543332 3345678888888877665433 2223333345566788899999999999999887
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHH-H----------------------------------HHHHHHHCCC-------
Q 042609 403 GLKPDVYTYTGLMSG-YANGGQMEEAC-E----------------------------------ILNEAKKNHS------- 439 (540)
Q Consensus 403 g~~p~~~t~~~ll~~-~~~~g~~~~A~-~----------------------------------~~~~m~~~g~------- 439 (540)
.||..-|...+.. +.+-.+.-++. . ++..+.+.|+
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 5676665544332 22111111111 1 1122222221
Q ss_pred ---------------------------------------CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 440 ---------------------------------------RLSPV--TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 440 ---------------------------------------~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
+|.+. ++.-++..|-+.|+++.|...++..++. .|+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchH
Confidence 23333 3445667788888888888888888865 5665
Q ss_pred HHHHHHH-HHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 479 DEYNKLI-QSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 479 ~~~~~ll-~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.-.-.+= +.++ +.|++++|..++++..+..
T Consensus 405 iEly~~KaRI~k-H~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 405 IELYLVKARIFK-HAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHHHH-hcCChHHHHHHHHHHHhcc
Confidence 4433222 3333 7888888888888877654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00029 Score=78.93 Aligned_cols=307 Identities=11% Similarity=-0.041 Sum_probs=188.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCC------CCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----H
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGC------VANQ--ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDS----E 268 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~------~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~ 268 (540)
......+...|++++|..++......-- .+.. .....+-..+...|+++.|...++.....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999987754210 1111 12222334456789999999999988763211221 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCH--HHHHHHHHHHHhCCchHHHHHHHHHHhHhc----cCC--C-
Q 042609 269 KVGKIISWFCKGGKAKEAHVVYTLAREKKM---YPPQ--SVVAFLISSLCQEDETVKLALDMLDDFSGE----ARK--Y- 336 (540)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----~~~--~- 336 (540)
..+.+...+...|++++|...+++.....- .+.. .....+-..+... |++++|...+++.... +.. +
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccH
Confidence 445666778889999999999988764211 1111 1222233334444 9999999988876542 111 0
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG--PPP--GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPDVYTY 411 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~ 411 (540)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|.+.++....... ......+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 11223445556677899999999998875431 112 233445566678889999999999888754210 0111111
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-
Q 042609 412 -----TGLMSGYANGGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKD----VGVQPNV- 478 (540)
Q Consensus 412 -----~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~- 478 (540)
...+..+...|+.+.|...+............ ..+..+..++...|+.++|..++++... .|..++.
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11224455688999999998776543211111 1245677788899999999999998763 2333322
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 479 DEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.+...+-.++ .+.|+.++|...+.+..+..
T Consensus 732 ~~~~~la~a~-~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLY-WQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHh
Confidence 2333333344 48899999999999987654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-06 Score=78.47 Aligned_cols=251 Identities=16% Similarity=0.098 Sum_probs=161.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
+-+.-.|++..++.-.+ .....-..+.....-+.++|...|+.+.+. .++.... .|...... ++..|+...++.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~-~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVR-LLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHH-HHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHH-HHHHHHhCccch
Confidence 34455688887775555 222221223444556778888999877544 3443333 45544443 444555544566
Q ss_pred HHHHHHHHHhHhccCCC-CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKY-AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
+.++.-+++........ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666554443332 2222223334556789999999988642 4677778889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 399 MRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV 474 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 474 (540)
|.+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 98763 34 445555555543 34799999999998765 568999999999999999999999999999886543
Q ss_pred CCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 042609 475 QPNVDEYNKLIQSLCLKALDW-RTAEKLLEDMRLK 508 (540)
Q Consensus 475 ~p~~~~~~~ll~~~~~~~g~~-~~A~~l~~~m~~~ 508 (540)
. +..+...++-... ..|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSL-HLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHH-HTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHh
Confidence 2 5556666664443 55655 7788899998875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00076 Score=62.34 Aligned_cols=333 Identities=12% Similarity=0.107 Sum_probs=213.7
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHH
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELI---ALFSKLGKGKAAFEVFNKFGDYGCVANQETY-YFTIEALS 243 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~-~~ll~~~~ 243 (540)
+.-.|.+.+|..-|....+. |+..|-++. ..|...|+...|+.=|.+.++. +||-..- ..-...+.
T Consensus 48 lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 34446666777777666653 444455444 4577788888888888888764 5764332 22234567
Q ss_pred hCCChhHHHHHHHHHHHCCCCC--CHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 042609 244 RRKIFDWAWSVCEKMIETGSLP--DSEK------------VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAF-L 308 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p--~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l 308 (540)
+.|.++.|..=|+..++..... .... ....+..+.-.|+...|+.....+.+ +.|....+.. -
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHH
Confidence 8888999988888888764211 1111 12234446667889999988888887 4465555444 4
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH----HHHH-----
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV----FNSV----- 379 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~l----- 379 (540)
-.+|... |.+..|+.-++...+.... +..++--+-..+...|+.+.++...++..+. .||... |..|
T Consensus 196 akc~i~~-~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 196 AKCYIAE-GEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHhc-CcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence 4455554 8898888877766554322 4455666777788899999999999888874 455321 2111
Q ss_pred ----HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 380 ----ISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT---YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 380 ----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
+......+++.++.+-.+...+....-..+. +..+-.+|...|++.+|++.-.+.+... +-|+.++.--..+
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 1223446677777777777766633222233 3445566778899999999999998863 2347888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HCCCCCcHHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR------LKGLHLNGITRALIRAVKEL 526 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~------~~g~~p~~~t~~ll~a~~~l 526 (540)
|.-..+++.|+.-|+...+.+ ++.... +.| .+.|.++.+.-. -.|++-|..-..+++||++|
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n--~sn~~~---------reG-le~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN--ESNTRA---------REG-LERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC--cccHHH---------HHH-HHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHH
Confidence 999999999999999988753 332221 222 244444433332 23666677777788888887
Q ss_pred HHh
Q 042609 527 EED 529 (540)
Q Consensus 527 ~~~ 529 (540)
.+.
T Consensus 419 Aqk 421 (504)
T KOG0624|consen 419 AQK 421 (504)
T ss_pred HHh
Confidence 764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0004 Score=71.12 Aligned_cols=208 Identities=12% Similarity=0.085 Sum_probs=113.5
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CC--------CCCHHHHHHH
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY-GC--------VANQETYYFT 238 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~--------~p~~~t~~~l 238 (540)
|...|+.+.|++-.+.++ +..+|..|.+.|.+..+.+-|.-.+..|... |. .++ .+=.-+
T Consensus 738 yvtiG~MD~AfksI~~Ik----------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakv 806 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK----------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKV 806 (1416)
T ss_pred EEEeccHHHHHHHHHHHh----------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHH
Confidence 355688888888777665 4578999999999999888887777776431 11 122 222222
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
.-.....|.+++|..+|++-++. ..|=..|...|.|++|.++-+.- +-..-..||......+-.. ++
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr~Tyy~yA~~Lear-~D 873 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK---DRIHLRNTYYNYAKYLEAR-RD 873 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc---cceehhhhHHHHHHHHHhh-cc
Confidence 33345678888888888877653 23444556666666666654421 1111123333333322222 55
Q ss_pred HHHHHHHHHHhH----------hcc---------CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----------C-
Q 042609 319 VKLALDMLDDFS----------GEA---------RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----------G- 368 (540)
Q Consensus 319 ~~~a~~~~~~m~----------~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g- 368 (540)
.+.|++.|++.. .+. ...|...|.-....+-..|+++.|+.+|...... |
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 555555554421 110 0112222333333333445555555544443321 0
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 369 ---------PPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 369 ---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
-..|....-.|.+.|-..|++.+|..+|.+.
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1234555556777888888888888887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.003 Score=64.66 Aligned_cols=359 Identities=16% Similarity=0.078 Sum_probs=202.5
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG-CVANQETYY 236 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p~~~t~~ 236 (540)
+..|+.+.-+....|+++.+.+.|++....... ....|+.+...|...|.-..|+.+.+.-.... -++|...+-
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-----~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-----EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 445666666667778888888888876654333 56889999999999999999999998765432 233445555
Q ss_pred HHHHHHHh-CCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCC
Q 042609 237 FTIEALSR-RKIFDWAWSVCEKMIET--GS--LPDSEKVGKIISWFCKG-----------GKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 237 ~ll~~~~~-~~~~~~a~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p 300 (540)
..-+.|.+ .+.++++.++-.+.+.. +. ......|..+.-+|... ....++.+.+++..+.+..-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 55555554 46777777777666652 11 12334444444444432 12346677777777665332
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCC--------
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS-EGPPP-------- 371 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p-------- 371 (540)
....|+.-+. |... ++.+.|.+..++....+...+...|..+.-.+...+++.+|+.+.+.... .|...
T Consensus 478 p~~if~lalq-~A~~-R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQ-YAEQ-RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHH-HHHH-HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 2333333332 2233 77888888888888877677788888888888888888888888776553 22200
Q ss_pred ----------CHHHHHHHHHHHHh---------cC--------------ChhHHHHHHHHH--------HHCC-------
Q 042609 372 ----------GNAVFNSVISAYSK---------AG--------------DMTPAMEMLKLM--------RSRG------- 403 (540)
Q Consensus 372 ----------~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~m--------~~~g------- 403 (540)
-..|...++..+-. .| +..+|......+ ...|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 01122222221110 00 111111111110 0001
Q ss_pred --C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 404 --L--KPD------VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG 473 (540)
Q Consensus 404 --~--~p~------~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (540)
+ .|+ ...|......+.+.+..++|...+.+..+.. ...+..|......+...|.+++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-
Confidence 0 122 2234455555666666677766666666542 344555555556666666777777766666543
Q ss_pred CCCC-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 474 VQPN-VDEYNKLIQSLCLKALDWRTAEK--LLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 474 ~~p~-~~~~~~ll~~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.|+ .....++-..+. +.|+..-|.. ++.++.+.+......-|.+...++..+
T Consensus 714 -dP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 714 -DPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred -CCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 233 233444444443 5555555555 666666655544444445555544444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00018 Score=77.72 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDY-GCVAN---QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
+...|-..|......++.++|.+++++.+.. ++.-. ...|..+++.-..-|.-+...++|++..+.. .-..+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888888888888888888887542 11111 2245555555555666667777777776642 2244567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHc
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCR 350 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 350 (540)
.|...|.+.++.++|.++|+.|.++- .-....|......+.+. ++.+.|..++.+....-.+ -.+....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777878788888888877777643 14455666666666665 5566666666665543111 011223333344445
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042609 351 MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP 406 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 406 (540)
.|+.+.+..+|+..... .+.-...|+..|++=.+.|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666666554 23344566666666666666666666666666665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.7e-05 Score=77.64 Aligned_cols=220 Identities=12% Similarity=0.024 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHH
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSV 344 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 344 (540)
|--..-..+...+...|-...|..+|++ ...|.-.|..|+.. |+..+|..+..+..+ .+|+...|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er---------lemw~~vi~CY~~l-g~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLL-GQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHh-cccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333445667778888889999988887 45667777777777 788888888887766 56778888888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 424 (540)
.+......-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+. .-..+|-.+-.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 88887777888888888765422 111111122236888888888877665532 2556787777788888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLED 504 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~ 504 (540)
+.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|-..+-... +-|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsv-dvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSV-DVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhh-hcccHHHHHHHHHH
Confidence 99999998888753 234578999999999999999999999999877644 3444444443433 78899999999888
Q ss_pred HHH
Q 042609 505 MRL 507 (540)
Q Consensus 505 m~~ 507 (540)
|..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 854
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00054 Score=65.66 Aligned_cols=166 Identities=10% Similarity=0.061 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD--VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
+++++..++++.+.+.+ +..+|+.....+.+.|+ .+++..+++++.+.. +-|..+|+...-++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445554444443222 22233333333333333 244555665665543 235556666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANG---GQ----MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL----EEFDCALKL 465 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~---g~----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~ 465 (540)
+++.+.+.. |...|+.....+.+. |. .+++.....+++... +-|...|+-+...+... ++..+|.+.
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 666665443 444454444433332 11 234555555555543 33556666666666552 334556666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 466 LNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 466 ~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
+.+..+.++ .+......|+..|+
T Consensus 244 ~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 244 CLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred HHHhhcccC-CcHHHHHHHHHHHH
Confidence 666555432 24556666666666
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00036 Score=75.43 Aligned_cols=225 Identities=10% Similarity=0.011 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREK-KMY---PPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP 340 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~---p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 340 (540)
-....|-..|......+++++|.+++++.... ++. --...|.++++.-... |.-+...++|++..+..- ....
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqycd--~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQYCD--AYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHhcc--hHHH
Confidence 44566777788888888888888888877642 111 1234566666555444 777788888888876532 1344
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD---VYTYTGLMSG 417 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~ 417 (540)
|..|...|.+.+++++|-++++.|.+. +.-....|...++.+.+..+-+.|..++.+..+. -|- .....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 888888899999999999999999865 3346678888888888888888898888887765 333 3334444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHhCCCH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV--DEYNKLIQSLCLKALDW 495 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~g~~ 495 (540)
-.+.|+.+.+..+|+...... +--...|+..|++-.++|+.+.+..+|++....++.|-. ..|...+ .|-.+.|+-
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL-eyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL-EYEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH-HHHHhcCch
Confidence 567889999999999888763 224568999999999999999999999999887766543 4566666 355566763
Q ss_pred HH
Q 042609 496 RT 497 (540)
Q Consensus 496 ~~ 497 (540)
+.
T Consensus 1688 ~~ 1689 (1710)
T KOG1070|consen 1688 KN 1689 (1710)
T ss_pred hh
Confidence 33
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00014 Score=67.10 Aligned_cols=101 Identities=12% Similarity=-0.061 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ---ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDS--EK 269 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~ 269 (540)
.....+..+...+...|++++|+..|+++.... +.+. .++..+..++.+.|++++|...++.+++....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 367788888889999999999999999987653 2222 46677888889999999999999999876421111 23
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHc
Q 042609 270 VGKIISWFCKG--------GKAKEAHVVYTLAREK 296 (540)
Q Consensus 270 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~ 296 (540)
+..+..++.+. |+.++|.+.|+.+...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 44444445443 5566666666666554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0054 Score=63.94 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=130.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...+.|+.++|..+++.....+.. |..+...+-..|...|+.++|..+|++.... -|+..-...++.+|.+.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 556779999999998877765554 8899999999999999999999999999875 478888899999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhC
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG----------KAKEAHVVYTLAREKK-MYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~ 315 (540)
.+.+-.++--+|-+. ++-+...+=++++.+.+.- -+.-|.+.++.+.+.+ -.-...-.-.-+..+-.
T Consensus 125 ~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~- 202 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL- 202 (932)
T ss_pred HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh-
Confidence 888766665555553 4445555556666665432 1345677777777654 11111111111111222
Q ss_pred CchHHHHHHHHHH-hHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042609 316 DETVKLALDMLDD-FSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP 369 (540)
Q Consensus 316 ~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 369 (540)
.|++++|++++.. ..+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 203 ~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 203 QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 3889999999843 33332232333334556677777888888777777776653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00083 Score=64.35 Aligned_cols=207 Identities=6% Similarity=-0.065 Sum_probs=136.3
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG-KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI 247 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (540)
...+..++|..+.+.+.++.+. +..+|+.--..+...| ++++++..++++.+.. +.+..+|+.--..+.+.+.
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 4456778899999999998876 7788888877777777 6799999999998765 4566677766656666665
Q ss_pred h--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---C---chH
Q 042609 248 F--DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE---D---ETV 319 (540)
Q Consensus 248 ~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~---~~~ 319 (540)
. +++..+++++++.. .-+..+|+...-++.+.|+++++.+.++++.+.+ .-+...|+.....+... + ...
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccH
Confidence 3 67888888888765 3577888888888888899999999999998876 33445555433222221 0 112
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRM----KDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK 385 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 385 (540)
++.+++..++..... -+...|+.+...+... +...+|...+.+....+ +.+......|++.|+.
T Consensus 200 e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 345555545444322 2445566666666552 23344666665554432 2244455556666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0028 Score=71.16 Aligned_cols=301 Identities=12% Similarity=0.008 Sum_probs=179.5
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 042609 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS------LPD--SEKVGKIISWF 277 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------~p~--~~~~~~li~~~ 277 (540)
.....|++..+..+++.+.......+..........+...|+++++..++......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112222333445556678999999999987754311 111 11222334456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCC-----CcccHHHHHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQ----SVVAFLISSLCQEDETVKLALDMLDDFSGEARKY-----AIKPFSSVIRSL 348 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~ 348 (540)
...|++++|...+++..+.....+. ...+.+-..+.. .|++++|...+++........ ...++..+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 7899999999999987763211121 112222223333 499999999998876432111 112345566677
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISE----GPP--P-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR--GLKP--DVYTYTGLMSG 417 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~~~ll~~ 417 (540)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886542 221 1 2234455566677789999999999886543 1112 23344455667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSR-LSPVTY-----HTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD---EYNKLIQSL 488 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~ 488 (540)
+...|+.++|...+.+.....-. .....+ ...+..+...|+.+.|.+++............. .+..+...+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 78899999999999887542111 111111 112344566899999999987765322111111 123344444
Q ss_pred HHhCCCHHHHHHHHHHHHHC
Q 042609 489 CLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 489 ~~~~g~~~~A~~l~~~m~~~ 508 (540)
. ..|++++|..++++....
T Consensus 702 ~-~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 702 I-LLGQFDEAEIILEELNEN 720 (903)
T ss_pred H-HcCCHHHHHHHHHHHHHH
Confidence 4 778999999999988653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0028 Score=62.99 Aligned_cols=321 Identities=14% Similarity=0.130 Sum_probs=190.6
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--------------------
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCV-------------------- 229 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~-------------------- 229 (540)
+.+..++|...++.... -+..+...=...+-+.|++++|+++|+.+.+++.+
T Consensus 91 rlnk~Dealk~~~~~~~--------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR--------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhcccc--------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 34677777777662222 14445555566677888888888888887554321
Q ss_pred -------CCHHHHHHHHH---HHHhCCChhHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHhcCCHHH
Q 042609 230 -------ANQETYYFTIE---ALSRRKIFDWAWSVCEKMIETG-------------SLPDSE-KVGKIISWFCKGGKAKE 285 (540)
Q Consensus 230 -------p~~~t~~~ll~---~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~li~~~~~~g~~~~ 285 (540)
....+|..+.+ .++..|++.+|+++++...+.+ ++-+.. .-.-|.-++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01224544443 3456789999999998883321 111111 12234455677899999
Q ss_pred HHHHHHHHHHcCCCCCHHHH----HHHHHHHHhCCchHH-HHHHHHHHhH------------------------------
Q 042609 286 AHVVYTLAREKKMYPPQSVV----AFLISSLCQEDETVK-LALDMLDDFS------------------------------ 330 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~-~a~~~~~~m~------------------------------ 330 (540)
|..+|......+. +|.... |.++ ++.....-++ .++..++...
T Consensus 243 a~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887763 333221 1122 1111101011 0011110000
Q ss_pred -------h--ccCCCC--cccHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 331 -------G--EARKYA--IKPFSSVIRSLCR--MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 331 -------~--~~~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
+ ....+. ...+..++..+.+ ......+..++...-+....-...+.-.++......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 000111 1224444444432 22466677777776655333345566777888899999999999998
Q ss_pred --------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCH----HHHHHHHHHHHhcCCHHHHH
Q 042609 398 --------LMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH--SRLSP----VTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 398 --------~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p~~----~~~~~li~~~~~~g~~~~A~ 463 (540)
.+.+.+..|- +...+...|.+.++.+-|..++.+....- -.+.. .++.-++..-.+.|+-++|.
T Consensus 401 ~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 5555555554 45666777788887777888877765420 01222 33344444455789999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 464 KLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 464 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
.+++++.+.. .+|..+...++.+|+ +- +.+.|..+-.++
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~-~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYA-RL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHH-hc-CHHHHHHHhhcC
Confidence 9999999853 578999999999998 44 789998887765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00013 Score=66.04 Aligned_cols=313 Identities=14% Similarity=0.113 Sum_probs=212.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK-IISWFC 278 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~ 278 (540)
+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|-...++..|-..|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 6667777788999999999998887764 347788888888999999999999999998765 466555542 235567
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 279 KGGKAKEAHVVYTLAREKKMYPPQSVVAF-LISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
+.+.+.+|.++...|.+. +....-.. +-.+..-..+++..+..+.++...+| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999887653 22211111 22222223488888999888877544 334444444555689999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------CCHHH--------HHHHH
Q 042609 358 KTLLSKMISE-GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK-------------PDVYT--------YTGLM 415 (540)
Q Consensus 358 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~~t--------~~~ll 415 (540)
.+-|+...+. |.. ....||..+..| +.|+++.|+++..++.++|++ ||+.. -+.++
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 9999998865 555 456788777555 678999999999999999864 33221 23344
Q ss_pred HH-------HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 416 SG-------YANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 416 ~~-------~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.+ +.+.|+.+.|.+.+-.|.-. ....|++|...+.-.=. .|++.+..+-+.-+.....- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 43 45788999999988888643 24567888766554332 34444455545545544443 35677777778
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHH
Q 042609 488 LCLKALDWRTAEKLLEDMRLKGL-HLNGITRALIRAVKEL 526 (540)
Q Consensus 488 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~ll~a~~~l 526 (540)
|| +..-++-|-.++.+=...-+ ..+...|.|+.++--+
T Consensus 320 yC-KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~ 358 (459)
T KOG4340|consen 320 YC-KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITC 358 (459)
T ss_pred Hh-hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhC
Confidence 89 77778888877765433322 2445566677665443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=71.96 Aligned_cols=221 Identities=17% Similarity=0.104 Sum_probs=157.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 321 (540)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.+ |+......-+...+.+.|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 457788999988888888874 3567788888888888888888998888888754 6665544444443444488888
Q ss_pred HHHHHHHhHhccCCC--------CcccHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 322 ALDMLDDFSGEARKY--------AIKPFSSVIRSLCRMKDVHGAKTLLSKMI-SEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 322 a~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
|+.+++.......+. +...-.. ..+.....+....++|-++. ..+..+|...+..|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 888888876543210 0000000 12222333456666676665 444346777777777778889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 393 MEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 393 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+.|+....... -|..+||.|-..++...+.++|+..|.+.++. +|+- .....|.-.|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998887632 26788999999999999999999999999886 5553 455566777889999999998887654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0012 Score=59.11 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 383 YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE 458 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (540)
+.+..+++-|...++.|.+. -+..|.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 44455555555555555543 134444444444443 23455555556555543 34555555555555555666
Q ss_pred HHHHHHHHHHHHHC
Q 042609 459 FDCALKLLNEMKDV 472 (540)
Q Consensus 459 ~~~A~~~~~~m~~~ 472 (540)
+++|..++++....
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666655544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0031 Score=58.65 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=147.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhC---CchHHHHHHHHHHhHhccCCCCccc-HHHHHH
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL-CQE---DETVKLALDMLDDFSGEARKYAIKP-FSSVIR 346 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~---~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~ 346 (540)
.|+-.|.+.+++.+|..+.+++.- ..|-......++.+. .+. .....-|...|+-.-+.+..-|... -.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 444457788888888877665321 112222222222211 111 1345666777766655555444433 455666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL-MSGYANGGQME 425 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~ 425 (540)
.+.-..++++++-.++.+...=...|..-+| +.++++..|.+.+|+++|-.+....++ |..+|.++ .++|.++++.+
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 6666778888888888877653344444444 678999999999999999877665555 66677655 57888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHhCC---C
Q 042609 426 EACEILNEAKKNHSRLSPVTY-HTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY-------NKLIQSLCLKAL---D 494 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~ll~~~~~~~g---~ 494 (540)
.|++++-.+... .+..+. ..+.+-|.+++.+--|-+.|+++... .|+..-| .-++..+|.+.. -
T Consensus 446 lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 446 LAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCCccchHHHHHHHHHcCCCCCCc
Confidence 998887655433 244443 44457788999999999999988865 4555444 344444442221 1
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHH
Q 042609 495 WRTAEKLLEDMRLKGLHLNGITRALIRAVKELEE 528 (540)
Q Consensus 495 ~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~ 528 (540)
.....+++.-+. ..|+.....+|+.+++..+
T Consensus 521 ~~~~rEVvhllr---~~~nsq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 521 ISQMREVVHLLR---MKPNSQCEFMIKVVRKWAE 551 (557)
T ss_pred hhHHHHHHHHHH---hCCCchHHHHHHHHHHHHH
Confidence 122333333332 2455555555555555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00042 Score=61.91 Aligned_cols=250 Identities=17% Similarity=0.157 Sum_probs=157.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
+-+.-.|++..++..-...... +-+...-..+-++|...|.+... ...+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 4445567777777665554332 24445555566777777765533 22222222 333333333333333344433
Q ss_pred HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q 042609 285 EAH-VVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSK 363 (540)
Q Consensus 285 ~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (540)
.-. .+.+.+.... .-+..++..+-...+...|++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 90 ~~~~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 90 SILASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3444444433 22333444444444444599999998887622 233444445666788889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 364 MISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 364 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
|... .+..|.+-|.+++.+ .+++.+|.-+|++|.++ ..|+..+.+-...++...|++++|..+++......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 9864 255677767776665 46799999999999886 57899999999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 042609 440 RLSPVTYHTLIRGYCKLEEF-DCALKLLNEMKDV 472 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 472 (540)
.-++.+...+|..-...|.- +-..+.+.+++..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 34566766666665566655 4445566666644
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0059 Score=64.33 Aligned_cols=290 Identities=16% Similarity=0.145 Sum_probs=134.8
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+.......+-+++|+.+|++..- +....+.||.- -+..++|.+.-++.. ....|..+..+-.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~---------n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM---------NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQL 1115 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc---------cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHH
Confidence 33334444555666666654332 44444444432 234444544444322 2345566666666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
+.|.+.+|.+-|-+ ..|...|..+++...+.|.+++-.+++...+++.-.|...+ .+|-+|.+. ++..+.+
T Consensus 1116 ~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt-~rl~elE 1186 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKT-NRLTELE 1186 (1666)
T ss_pred hcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHh-chHHHHH
Confidence 66666555544422 13445556666666666666666666655555544444332 344555554 4444444
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-----
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL----- 398 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----- 398 (540)
+++ ..|+......+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+--++
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 332 2344445555555555555555555555432 2244444444455555544433222
Q ss_pred -------------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 399 -------------------MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 399 -------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (540)
|...++.....-..-++.-|-..|-+++-+.+++...... +.....|+-|.-.|++- +.
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp 1328 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KP 1328 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CH
Confidence 2222222233334445555555555555555554433221 22334445555555443 23
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 460 DCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
++..+-++-.-.+ ...-.+|++. .+...|.+..-++.+-
T Consensus 1329 ~km~EHl~LFwsR------vNipKviRA~-eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1329 EKMMEHLKLFWSR------VNIPKVIRAA-EQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHh------cchHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 3333333333211 1122445553 3555566665555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0064 Score=59.90 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
+|...|+.--+..-++.|..+|.+..+.+..+ ++..++++|.-||. ++.+-|.++|+--.+. ..-++.--...++.+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 46666666667777778888888887776666 67777777777664 5567777777764443 122334445666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 454 CKLEEFDCALKLLNEMKDVGVQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
...++-..+..+|++....++.|+ ...|..+|. |-..-|+...+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~-yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE-YESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH-HHHhcccHHHHHHHHHHHHHh
Confidence 777777788888888876655544 366777774 455778888888777776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00021 Score=65.94 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDVGV-QP-NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.+...|.+.|++++|...+++..+... .| ....+..+...+. +.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL-KLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 456678889999999999999886521 12 2456777777776 889999999998888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.9e-05 Score=75.74 Aligned_cols=236 Identities=13% Similarity=0.108 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
--..-..+...+.+.|-...|+.+|++.. .|.-+|.+|+..|+..+|..+..+..+. +||...|..+.+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 33455667788899999999999998864 4677899999999999999999888874 689999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.....--+++|.++++....+. ...++.. .+. ++++.++.+.|+.-.+.+ .....+|-.+..+..+.+++.
T Consensus 466 v~~d~s~yEkawElsn~~sarA----~r~~~~~---~~~-~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA----QRSLALL---ILS-NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH----HHhhccc---ccc-chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 9888888999999987654331 1111111 122 388999999998765543 224566878888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
.|.+.|...... -+-+...||.+-.+|.+.|+-.+|...+++..+.+. -+-..|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999998764 233567899999999999999999999999998873 356677788888899999999999999887
Q ss_pred HCCC-CCCHHHHHHHHHHH
Q 042609 436 KNHS-RLSPVTYHTLIRGY 453 (540)
Q Consensus 436 ~~g~-~p~~~~~~~li~~~ 453 (540)
.... .-|......++..-
T Consensus 615 ~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 615 DLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HhhhhcccchhhHHHHHHH
Confidence 6421 12444444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0021 Score=67.46 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
.+.+|..+..+-...|.+.+|++-|-+. -|...|.-+++.+.+.|.+++-.+++....+..-+|... +.||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4688999999999999999999988653 467789999999999999999999998888876666654 47888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
+|++.+++.+.+.+.. .|+.......=.-++.. +.++.|.-+|... ..|..+...+...|++.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~-~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEE-KMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhh-hhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHH
Confidence 9999999988877653 24444443333344443 6666666555432 22444555555555554
Q ss_pred HHHHHHHHH------------------------HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 356 GAKTLLSKM------------------------ISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 356 ~a~~~~~~m------------------------~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
.|...-++. ...++-....-..-+|+-|-..|-+++.+.+++.-.... +...-.|
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmf 1316 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMF 1316 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHH
Confidence 444332221 111122223334556666777777777766665543210 1233445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
+-|.-.|.+-. .++..+-++-.-.. .| .--+|+++-+..-|.+..-+|.+..+.
T Consensus 1317 TELaiLYskyk-p~km~EHl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1317 TELAILYSKYK-PEKMMEHLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55555555432 23333222222211 11 124678888888888888887776653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00041 Score=61.79 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=64.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 042609 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG-YCKLEE--FDCA 462 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~~A 462 (540)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555554442 2355566666666666666666666666666653 2345555555554 345555 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.+++++..+.+.. +...+..+-..+ .+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~-~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDA-FMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhh
Confidence 6666666654321 333333333333 3566666666666666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0077 Score=59.33 Aligned_cols=186 Identities=18% Similarity=0.142 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCh
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN-------SVISAYSKAGDM 389 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~g~~ 389 (540)
.+++.|++-+....... -++.-++..-.+|...|++.+....-....+.|-. ...-|+ .+-.+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 45555555555554433 23333455555666666666655555554444322 111222 233356667778
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHH-------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 390 TPAMEMLKLMRSRGLKPDVYTYTGL-------------------------MSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~t~~~l-------------------------l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
+.|...|.+.......||..+=... -..+.+.|++..|...|.++++.. +-|..
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 8888888776655445544332111 222667788888888888888875 45678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.|..-.-+|.+.|.+..|+.=-+..++. .|+.. .|.-=..++ ....+|+.|.+.|++-.+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al-~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAAL-RAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888888877777765 33322 221111111 13456788888887776653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0001 Score=65.59 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=88.4
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhCCC--h
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL-SRRKI--F 248 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~-~~~~~--~ 248 (540)
.+.+++...++...+..+. |...|..+...|...|++++|+..|++..+.. +-+...+..+..++ ...|+ .
T Consensus 53 ~~~~~~i~~l~~~L~~~P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCc
Confidence 4445666666666666654 78888888888888888888888888887764 44666777766653 56666 4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
++|.+++++.++.+. -+..++..+...+.+.|++++|...|+.+.+..
T Consensus 127 ~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888887753 466777778888888888888888888887755
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-06 Score=52.16 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN 231 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~ 231 (540)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00016 Score=60.83 Aligned_cols=119 Identities=9% Similarity=-0.124 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 042609 177 VYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCE 256 (540)
Q Consensus 177 A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 256 (540)
-..+|+...+. ++..+..+...+...|++++|+..|+...... +.+...|..+..++.+.|++++|...|+
T Consensus 12 ~~~~~~~al~~--------~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 12 PEDILKQLLSV--------DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHHc--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556666554 33446667888899999999999999998765 5688889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 042609 257 KMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAF 307 (540)
Q Consensus 257 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 307 (540)
...+.. +.+...+..+..++.+.|+.++|...|+...+.. |+...+..
T Consensus 83 ~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~ 130 (144)
T PRK15359 83 HALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWSE 130 (144)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 999874 4678889999999999999999999999988754 66655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00035 Score=71.47 Aligned_cols=256 Identities=16% Similarity=0.209 Sum_probs=163.4
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CC
Q 042609 196 TVEILNELIA--LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET-G--------SL 264 (540)
Q Consensus 196 ~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g--------~~ 264 (540)
|..+-.++++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6777777775 4788899999988777655 4467999999999999988887777777542 1 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHH
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSV 344 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 344 (540)
++ .+-.-..-.....|.+++|+.+|++.++.+ +++.+++..|.+++|+++-+.-.+... ..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 22 222222223457799999999999877644 566677777999999998765332222 2346556
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC-------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEG-------------------PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g-------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (540)
...+-..++.+.|++.|++..... -..|...|.---.-+-..|+++.|+.+|...++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 666666778888887776542110 011222233333333345666666666654442
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
|-++++..|-.|+.++|.++-++ .| |......|.+.|-..|++.+|..+|-+.. +|..-|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAI 1000 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAI 1000 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHH
Confidence 44556666667777777777654 22 55566677888888888888888887654 355556
Q ss_pred HHHHHhCCCHHH
Q 042609 486 QSLCLKALDWRT 497 (540)
Q Consensus 486 ~~~~~~~g~~~~ 497 (540)
+ +| +..++++
T Consensus 1001 R-lc-KEnd~~d 1010 (1416)
T KOG3617|consen 1001 R-LC-KENDMKD 1010 (1416)
T ss_pred H-HH-HhcCHHH
Confidence 4 46 4444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0002 Score=75.55 Aligned_cols=160 Identities=9% Similarity=-0.017 Sum_probs=127.9
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...+-.|.....+.|++++|..+|+.+.+..+. +...+-.++..+.+.+++++|+..+++..... +-+......
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 445566677777889999999999999998886 88999999999999999999999999999875 456677778
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
+..++.+.|++++|..+|++....+ .-+..++..+...+-+.|+.++|...|+...+.. .+....|+..+ +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~-------~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL-------V 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH-------H
Confidence 8888999999999999999999843 3457889999999999999999999999987643 23345555444 3
Q ss_pred hHHHHHHHHHHhHhc
Q 042609 318 TVKLALDMLDDFSGE 332 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~ 332 (540)
+...-..+++++..+
T Consensus 231 ~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 231 DLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHHHcCcc
Confidence 344444555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0007 Score=66.93 Aligned_cols=249 Identities=13% Similarity=0.028 Sum_probs=174.1
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 207 FSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEA 286 (540)
Q Consensus 207 ~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 286 (540)
+.+.|+..+|.-.|+...+.. +-+...|..|...-...++-..|+..+++.++.. +-+..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 567888889988898887765 5577888888888888888888888888888763 24566677777788888888888
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHhCCchHHHHHHHHHHhH-hccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 287 HVVYTLAREKKMY--------PPQSVVAFLISSLCQEDETVKLALDMLDDFS-GEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 287 ~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
.+.++.-.....+ ++...-.. ..+... ..+....++|-++. ..+.+.|......|.-.|--.|++++|
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 8888776543210 00000000 011111 23444555555544 344446777788888888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
...|+..+... +-|...||.|-..++...+.++|+.-|.+.++. .|+ +.....|--+|...|.+++|...|-..+.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998753 336779999999999999999999999999886 555 45666677789999999999998876554
Q ss_pred C---------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 437 N---------HSRLSPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 437 ~---------g~~p~~~~~~~li~~~~~~g~~~~A~ 463 (540)
. +..++...|.+|=.++.-.++.|-+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2 11223345655555555555554333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0012 Score=66.87 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=10.8
Q ss_pred HHHHHHhcCChHHHHHHH
Q 042609 203 LIALFSKLGKGKAAFEVF 220 (540)
Q Consensus 203 li~~~~~~g~~~~A~~~f 220 (540)
.|..|.+.|.+-+|...-
T Consensus 621 aiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred HHHHHHHcCCchHHHHhh
Confidence 456666666666665543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-06 Score=50.98 Aligned_cols=33 Identities=45% Similarity=0.841 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.4e-06 Score=51.16 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVA 230 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p 230 (540)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00032 Score=62.62 Aligned_cols=147 Identities=15% Similarity=0.026 Sum_probs=83.2
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWA 251 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 251 (540)
|+-+....+........++ |....+.++....+.|++..|+..|++..... ++|..+|+.+--+|.+.|+++.|
T Consensus 80 G~a~~~l~~~~~~~~~~~~-----d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPK-----DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred ccccchHHHHhhhhccCcc-----cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHH
Confidence 4444444444443333332 55566666666677777777777777765543 56666777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHH
Q 042609 252 WSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLD 327 (540)
Q Consensus 252 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 327 (540)
..-|.+..+.- .-+...+|.|.-.|.-.|+.+.|+.++......+.. +..+-..+....... |++++|..+..
T Consensus 154 r~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~-g~~~~A~~i~~ 226 (257)
T COG5010 154 RRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQ-GDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhc-CChHHHHhhcc
Confidence 77776666652 234455666666666667777777666665554411 222222233333333 56666655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0031 Score=64.63 Aligned_cols=130 Identities=17% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
.|......+.+.+..++|...+.+....- .-....|...-..+...|..++|.+.|....... +-++.+..++...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34556677777888888877776665542 2244555555566777888888888888877653 223466778888888
Q ss_pred hcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 455 KLEEFDCALK--LLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 455 ~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+.|+..-|.. ++.++.+.+. -+...|-.+-..+ ++.|+.+.|.+.|....+-
T Consensus 730 e~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~-k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVF-KKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHH-HHccchHHHHHHHHHHHhh
Confidence 8887777776 8888887652 2455555555544 5788888888888876554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0017 Score=69.62 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIR 346 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 346 (540)
..+-.+..+|-+.|+.++|..+++++.+.+ |+. ...|.+-..+... +.++|++++.+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~--------------- 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE--DKEKAITYLKKAIY--------------- 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh--hHHHHHHHHHHHHH---------------
Confidence 455566666777777777777777777655 433 3333333333333 66777666655432
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR-GLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
.+...+++.++..+|.++....+. +...+-.+ .+.+... |..--+.++--+-..|-..++++
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------ERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------HHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 245555666666666666654211 22111111 1112111 11122334444555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
++..+++.+.+.. +-|.....-++..|.
T Consensus 241 ~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 241 EVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 6666666666654 224444455555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0087 Score=55.61 Aligned_cols=309 Identities=13% Similarity=0.057 Sum_probs=213.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT---IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG-KIIS 275 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~ 275 (540)
--.+...+...|++..|+.-|....+. |+..|..+ ...|...|+-..|+.=+...++. +||-..-. --..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334555667789999999999888763 44445444 44677888888888888888775 67643322 2234
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC------------CCHHHHH--HHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMY------------PPQSVVA--FLISSLCQEDETVKLALDMLDDFSGEARKYAIKPF 341 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~------------p~~~~~~--~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 341 (540)
.+.+.|.++.|..-|+...+.... +....|+ ..+..++.. |+...|+.+...+.+. ...|...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi-~~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEI-QPWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhc-CcchhHHH
Confidence 578999999999999998876521 1111122 244455555 8999999999988875 34466678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHH---
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY----TGL--- 414 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~l--- 414 (540)
..-..+|...|++..|..=++...+.. ..+..++--+-..+...|+.+.++...++..+. .||.... ..|
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 888899999999999988888776653 345666666777888999999999888887765 4554322 111
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 042609 415 ------MSGYANGGQMEEACEILNEAKKNHSRLSPVT---YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKL 484 (540)
Q Consensus 415 ------l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 484 (540)
+......+++.++.+-.+...+......... +..+-.+|...|++.+|++.-.+.++. .|+ ..++.-=
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 1123456788888888888777643322333 344556677889999999999998865 455 6777766
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 042609 485 IQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRA 522 (540)
Q Consensus 485 l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a 522 (540)
..+|. -...++.|+.-|+...+.+-..+.+--.+=+|
T Consensus 348 AeA~l-~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 348 AEAYL-GDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHh-hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 77776 45579999999999988765444333344444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.2e-06 Score=49.40 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00023 Score=59.27 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+......+...+...|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++..++.+ +.+..++..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 55667777788888999999999999987765 5577888888888989999999999999888764 456777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSV 304 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 304 (540)
.|...|++++|...|+...+.+ |+...
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 9999999999999999888755 44433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00073 Score=56.81 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=58.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
.+...+...|++++|...|+....... .+...|..+..++.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 445555666666666666666655532 245555666666666666666666666666543 335556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 458 EFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
+.++|...|+...+. .|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHH
Confidence 666666666666543 34444333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0032 Score=56.04 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=99.8
Q ss_pred cCChHHHHHHHHHHhh---CC-CCCCHHH-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 210 LGKGKAAFEVFNKFGD---YG-CVANQET-YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
..+.++.++++.+|.. .| ..++..+ |..++-+....|+.+.|..+++.+... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4567777777777743 33 4556554 556666777778888888888887665 2222222111111234467777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
+|.++++.+.+.+ +.|.+++-.-+...-. .|+.-+|++-+....+. ...|...|.-+-..|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka-~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKA-QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHH-cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7777777777665 2233333322222222 25545555555555443 3345566666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 042609 365 ISEGPPPGNAVFNSVISAYSKAG---DMTPAMEMLKLMRSR 402 (540)
Q Consensus 365 ~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 402 (540)
.-.. +.+...+..+.+.+.-.| +++-|.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5431 223333344444333322 334455555554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0019 Score=65.55 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=72.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC
Q 042609 274 ISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD 353 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 353 (540)
|.+......|.+|..+++.+.+... ..-|.-.+...+.+.|+++.|.++|-+. ..++-.|.+|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 4456677888888888887766542 2334444444444458888888888652 236778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
|++|.++-++.. |.......|-+-..-+-+.|++.+|++++-
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 888888776653 344455556555556666777777766653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=69.54 Aligned_cols=233 Identities=12% Similarity=0.123 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDS-EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+++..+ .+.. ..+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~------ 96 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQN------ 96 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccc------
Confidence 45678899999999999999999999977765 3443 3344444577788887777666 2222 11111
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
.++.....+...|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|+.. +
T Consensus 97 --------~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 97 --------LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred --------cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 33333333333443322 234467889999999999999999999999886 55888999999999999 9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSG---YA--NGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCKLEEFDCA 462 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~--~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A 462 (540)
+++|++++.+....-+ +..-|+.+... ++ ...+++.-..+.+.+... |..--..++-.+-..|-..++|+++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999988776511 11222222221 11 233444555555555543 3333456677777888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
..+++.+.+..-. |.....-++.+|-
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 9999999976533 7777888887765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.002 Score=57.73 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANG 421 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 421 (540)
..+-..+...|+-+....+....... .+.|....+..+....+.|++..|...|.+..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55666677778888888877775533 34465666778888999999999999999987763 56889999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKL 501 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l 501 (540)
|+.+.|..-|.+..+.. .-++..++.|...|.-.|+.+.|..++......+.. |...-..+..... ..|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~-~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVG-LQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHh-hcCChHHHHhh
Confidence 99999999999998863 346678888888899999999999999998876543 4444444444544 78899999887
Q ss_pred HHHHH
Q 042609 502 LEDMR 506 (540)
Q Consensus 502 ~~~m~ 506 (540)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0014 Score=69.48 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
++..+-.|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|...+++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 35556666666666666666666666665542 2233445555556666666666666666665543 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHh
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 331 (540)
++.+.|++++|..+|+++...+ |+ ...+..+-..+... |+.++|...|+....
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRR-GALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 5666666666666666666532 22 33333333333333 666666666666544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00053 Score=57.01 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 374 AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
.....+...+.+.|++++|.+.|+.+...+. .+...|..+...|.+.|++++|..+++...+.+ +.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3344455555566666666666666555432 244555555556666666666666666655543 33445555555566
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042609 454 CKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (540)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0069 Score=53.99 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=101.0
Q ss_pred CChhHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 246 KIFDWAWSVCEKMIET---G-SLPDSEK-VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
.+.++..+++.+++.. | ..++..+ |.-++-+...+|+.+.|..+++.+..+- |...-...+=.......|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 3455666666665432 3 4555544 4455566677888888888888876643 333322223333333346677
Q ss_pred HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
+|+++++.+.+.+ +.|.+++--=+-..-..|+.-+|.+-+....+. +.-|...|.-+-+.|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777766654 334444544444444455555555555555544 45566666666666666666666666666665
Q ss_pred HCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 042609 401 SRGLKPD-VYTYTGLMSGYAN---GGQMEEACEILNEAKKN 437 (540)
Q Consensus 401 ~~g~~p~-~~t~~~ll~~~~~---~g~~~~A~~~~~~m~~~ 437 (540)
-. .|. ...+..+-..+.- ..+++-|.+.|.+..+.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 44 222 2223333333222 22445555666655554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=70.72 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 370 PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR--GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYH 447 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 447 (540)
+.+......+++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..+++..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334455555555555555555555555555544 111112233455566666666666666655555555556666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.|++.+.+.|++..|.++..+|...+...+..|+.--+.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 6666666666666666655555544444444444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=55.32 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGC-VANQETYYFTIEALSRRK--------IFDWAWSVCEKMIETGSLPDSEK 269 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~ 269 (540)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566667777999999999999999999 899999999999887763 23456777788887778888888
Q ss_pred HHHHHHHHHh
Q 042609 270 VGKIISWFCK 279 (540)
Q Consensus 270 ~~~li~~~~~ 279 (540)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8877776644
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0027 Score=66.76 Aligned_cols=165 Identities=16% Similarity=0.052 Sum_probs=110.4
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG-CVANQETYYF 237 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p~~~t~~~ 237 (540)
+.|..|...|+..-+...|.+.|+..-+.... +...+......|+...+++.|..+.-..-+.. ...-...|..
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-----daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-----DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 34666666677666777788888888887765 78888899999999999998888833322211 0011122333
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
.--.|.+.++...+..-|+...+.. +-|...|..+..+|..+|.+..|.++|.+...-+ |+..--...+...-...|
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhh
Confidence 3344566777777877777777654 3567788899999999999999999998876633 443322223333333348
Q ss_pred hHHHHHHHHHHhHh
Q 042609 318 TVKLALDMLDDFSG 331 (540)
Q Consensus 318 ~~~~a~~~~~~m~~ 331 (540)
.+.+++..+.....
T Consensus 645 kYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 645 KYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888776543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0015 Score=64.02 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
...++..+...++++.|..+|+++.+.. |++ ...|+..+...++-.+|.+++++..+.. +-+......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666677888999999999988753 553 3457777878888889999998888662 2256666666667888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.++.+.|..+.+++.+. .|+. .+|..|..+|.+.|+++.|+-.++.+-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999886 3544 689999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0002 Score=70.27 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=103.8
Q ss_pred cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 333 ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE--GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
+...+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445666788888888888999999999988754 2222234557999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL 456 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (540)
++.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888777888887777777666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.4e-05 Score=47.17 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGC 228 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~ 228 (540)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0003 Score=54.21 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 379 VISAYSKAGDMTPAMEMLKLMRSRGL-KPDVYTYTGLMSGYANGG--------QMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555555555555555 555555555555544321 222344444444444444444444444
Q ss_pred HHH
Q 042609 450 IRG 452 (540)
Q Consensus 450 i~~ 452 (540)
+..
T Consensus 111 l~~ 113 (120)
T PF08579_consen 111 LGS 113 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0014 Score=63.71 Aligned_cols=123 Identities=13% Similarity=-0.033 Sum_probs=67.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGK 282 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 282 (540)
.-.+...|++++|+..++.+...- +-|..-.......+.+.++.++|.+.++.++.. .|+ ....-.+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 333445666666666666655432 334444444455666666666666666666654 333 4444455566666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh
Q 042609 283 AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 283 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 331 (540)
..+|.++++...... +-+...|..+-.+|... |+..++..-..+...
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~-g~~~~a~~A~AE~~~ 436 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAEL-GNRAEALLARAEGYA 436 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 666666666555433 34455555555555554 555555555444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.058 Score=56.62 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=150.0
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALF--SKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...+++.+|.+..+++.+..+ | ..|..++.++ .+.|+.++|..+++.....+. -|..|...+-..|.+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~P------n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP------N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC------C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHh
Confidence 345677788888887776443 3 2344445544 578999999999988866553 38899999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCC---------
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQED--------- 316 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--------- 316 (540)
+.++|..+|++..+. .|+......+..+|.+.+++.+-.++--+|-+ ..|.. ..+...+.-+.+..
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999999876 57777778888899998888765544333322 12332 33333333333321
Q ss_pred chHHHHHHHHHHhHhccCCCC-cccHHHHHHHHHcCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYA-IKPFSSVIRSLCRMKDVHGAKTLLS-KMISEGPPPGNAVFNSVISAYSKAGDMTPAME 394 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (540)
-...-|.+.++.+.+.+.+.. ..-...-...+-..|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 123446666666666541111 1112223344557888999999994 33343344455555677888999999999999
Q ss_pred HHHHHHHCCC
Q 042609 395 MLKLMRSRGL 404 (540)
Q Consensus 395 ~~~~m~~~g~ 404 (540)
+-.++..+|.
T Consensus 248 l~~~Ll~k~~ 257 (932)
T KOG2053|consen 248 LSSRLLEKGN 257 (932)
T ss_pred HHHHHHHhCC
Confidence 9999998864
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=46.43 Aligned_cols=27 Identities=44% Similarity=1.020 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
|++++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0073 Score=58.91 Aligned_cols=134 Identities=17% Similarity=0.096 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG-NAVFNSVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 395 (540)
|..++|+..++.+...- +-|..-.....+.+.+.++.++|.+.++++... .|+ ....-.+.++|.+.|+..+|+.+
T Consensus 320 ~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 320 GQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 77888888888876542 234555566677777888888888888888764 344 44555667778888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
++...... +-|...|..|-.+|...|+..++.....++... .|+++.|...+....+.
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~------------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL------------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHh
Confidence 87776663 336778888888888888888877777666542 36666666666666543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=55.42 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=67.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV--YTYTGLMSGY 418 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~ 418 (540)
.++..+ ..++...+...++.+.+...... ....-.+...+...|++++|...|+........|+. .....|...+
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 333333 36666666666666665422211 122223445566667777777777776665422221 2333445556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 419 ANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
...|++++|+..++..... ......+....+.|.+.|+.++|...|+.
T Consensus 96 ~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6677777777776553322 22344555566667777777777776664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0007 Score=66.27 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=53.1
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
++.+...++++.|..+|+++.+.. +...-.|+..+...++-.+|++++++..+.. +.|...+..-...|.+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--------PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 333333344455555555444421 1223334444444455555555555544321 2344444444444555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
.++++.|..+.+++.... +-+-.+|..|..+|.+.|+++.|...+..
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 555555555555554431 12223455555555555555555544443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.036 Score=54.87 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
|+.+|+.||.-+... .++++.+.++++... ++-....|..-|..-.+.++++..+.+|.+.+..- .+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 899999999988766 999999999999864 35567788888999999999999999999988764 45666766665
Q ss_pred HHHh-cCCHH----HHHHHHHHHHH-cCCCCC-HHHHHHHHH---------HHHhCCchHHHHHHHHHHhHh
Q 042609 276 WFCK-GGKAK----EAHVVYTLARE-KKMYPP-QSVVAFLIS---------SLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 276 ~~~~-~g~~~----~A~~~~~~m~~-~~~~p~-~~~~~~ll~---------~~~~~~~~~~~a~~~~~~m~~ 331 (540)
--.+ .|+.. ...+.|+-... -|+.+- -..|+..+. .+..+ .+.+...++|+++..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~-QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN-QRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH-HHHHHHHHHHHHHhc
Confidence 4433 23333 34455665543 343332 233444332 22233 467777888888764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0017 Score=54.69 Aligned_cols=127 Identities=11% Similarity=-0.003 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFT 238 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~l 238 (540)
|..++..+ ..++...+...++.+....+.. .......-.+...+...|++++|...|+........++ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34444443 3566666666677666654430 00123333344566777777777777777776541221 1233345
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
...+...|++++|...++..... ......+....+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666777777777777553322 23344555666777777777777777764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00082 Score=58.63 Aligned_cols=87 Identities=17% Similarity=0.369 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC----------------CChhHHHHH
Q 042609 196 TVEILNELIALFSK-----LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR----------------KIFDWAWSV 254 (540)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~ 254 (540)
|-.+|..++..|.+ .|.++-....++.|.+.|+..|..+|+.||+.+-+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 66777778877765 477888888899999999999999999999987653 233557788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 255 CEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 255 ~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
+++|...|+.||..|+..|++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=57.32 Aligned_cols=103 Identities=21% Similarity=0.401 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 370 PPGNAVFNSVISAYSKA-----GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
..|-.+|..+|+.|.+. |.++-....+..|.+-|+.-|..+|+.||..+=+ |.+ .|. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccc-c
Confidence 34566666666666543 4555555556666666666666666666665433 111 011 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK 491 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 491 (540)
.+.++..-| -.+.+-|++++++|...|+.||..++..+++.+..+
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 111111111 123466888888888888888888888888877633
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.097 Score=50.17 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..+++++-..+... +-+++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778888888887766654 47888899999999999999887765432 224577888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 455 KLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+.|...+|..+..++ + + ..-+..|. +.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~-~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYL-KCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHH-HCCCHHHHHHHHHHc
Confidence 999999988887762 1 2 33344555 778888887764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.1 Score=50.00 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=97.3
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
..+.+..|.-|...|+...|.++-.+.. .|+..-|-..|.+|+..+++++-..+... + -...-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 4457777888889999999999877763 47889999999999999999988876543 1 134789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+.--+.. |......+...
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~ 300 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKR 300 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 99999999999988772 12456889999999999988765543 56666666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=49.17 Aligned_cols=94 Identities=27% Similarity=0.253 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK 279 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 279 (540)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445555666666666666666665542 2333555556666666666666666666665543 2333455566666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 042609 280 GGKAKEAHVVYTLARE 295 (540)
Q Consensus 280 ~g~~~~A~~~~~~m~~ 295 (540)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=49.22 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..+...+...|++++|...|+.+.+..+. +..++..+...+...|++++|++.|+...+.. +.+..++..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-----NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHH
Confidence 34455667789999999999998876654 56788999999999999999999999988765 4455788888899
Q ss_pred HHhCCChhHHHHHHHHHHHC
Q 042609 242 LSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~ 261 (540)
+...|+++.|...+....+.
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHhHHHHHHHHHHHHcc
Confidence 99999999999999887754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.14 Score=50.76 Aligned_cols=331 Identities=12% Similarity=0.045 Sum_probs=209.4
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-QETYYFTIEALS 243 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-~~t~~~ll~~~~ 243 (540)
-++.+..|+++.|...|.....+.+. |-+.|..=..+|++.|++++|++=-.+-++. .|+ ...|+-...++.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-----nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-----NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALF 81 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-----ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHH
Confidence 35677889999999999998887764 8899999999999999999999877776664 465 457888888999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHhCC-
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH---VVYTLAREK---KMYPPQSVVAFLISSLCQED- 316 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~- 316 (540)
-.|++++|..-|.+-++.. +.+...++.+.+++.......+.. .++..+... ........|..++..+-+..
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 9999999999999988763 345667778888772111000000 011110000 00011122222332222111
Q ss_pred --------chHHHHHHHHHHh-----HhccC-------CCC----------------------cccHHHHHHHHHcCCCH
Q 042609 317 --------ETVKLALDMLDDF-----SGEAR-------KYA----------------------IKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 317 --------~~~~~a~~~~~~m-----~~~~~-------~~~----------------------~~~~~~li~~~~~~g~~ 354 (540)
.+...+...+... ...+. .|. ..-...+.++.-+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111121111110 00111 110 01156677777788889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTG-------LMSGYANGGQMEEA 427 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~~~g~~~~A 427 (540)
+.+.+-+....+.. -+..-++..-.+|...|.+.++...-....+.|-. ...-|+. +-.+|.+.++++.|
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 99999998887753 45555666677888889888887777766665532 2222333 33356667788889
Q ss_pred HHHHHHHHHCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVT-------------------------YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
...|.+.....-.|+... .-.=...+.+.|++..|.+.|.++++.. +-|...|.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 988888766544443211 0111345678899999999999999875 33666777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.--.+|. +.|.+..|++=.+..++.
T Consensus 397 NRAac~~-kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 397 NRAACYL-KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 7766665 888888888877776665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.059 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKF 223 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m 223 (540)
|+.....|-..|++++|.+.|.+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 444445566667777777777665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0074 Score=48.56 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLK--PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR--LSPVTYHTLIRGY 453 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~ 453 (540)
.+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|++++|...++.+...... .....+..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444455555555555554433110 01223344444555555555555555554443110 1123344444455
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042609 454 CKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.01 Score=47.79 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHS--RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ--PNVDEYNKLI 485 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll 485 (540)
++..+...+.+.|++++|...+..+..... ......+..+...+.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555556666677777777766665421 111334555666666667777777777666643111 1123344444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
..+. +.|++++|.+.++++.+..
T Consensus 84 ~~~~-~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQ-ELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHH-HhCChHHHHHHHHHHHHHC
Confidence 4443 5666677777776666653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.35 Score=51.77 Aligned_cols=224 Identities=12% Similarity=0.067 Sum_probs=144.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
+..|.+.. ...+...|-+..+... .=...|..|...|+..-+...|.+.|+...+.+ ..+...+......|.+. .+
T Consensus 466 a~~~~rK~-~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~-~~ 541 (1238)
T KOG1127|consen 466 ALGCMRKN-SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE-ST 541 (1238)
T ss_pred HHHHhhhh-HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc-cc
Confidence 33444433 5555555555554421 224578889999998889999999999887755 23344566677777776 88
Q ss_pred HHHHHHHHHHhHhccCC-CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 319 VKLALDMLDDFSGEARK-YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
+++|..+.-...+.... .-...|.-..-.|-+.++..++..-|+...... +.|...|..+.++|...|++..|.++|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 99999883332221100 001113334445667888899999999887763 3478899999999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 398 LMRSRGLKPDVYTYTGLMS--GYANGGQMEEACEILNEAKKNH------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 398 ~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+.... +|+. +|...-. .-+..|.+.+|...+..+.... ..--..++..+...+.-.|-..+|..++++-
T Consensus 621 kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 621 KASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 87765 4443 3333332 2456889999999988876531 1112345555555555556666666666554
Q ss_pred H
Q 042609 470 K 470 (540)
Q Consensus 470 ~ 470 (540)
+
T Consensus 698 i 698 (1238)
T KOG1127|consen 698 I 698 (1238)
T ss_pred H
Confidence 4
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0087 Score=58.73 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=44.6
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (540)
...+++++|...|+++.+..+. +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~-----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPN-----NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3445555555555555554443 44555555555555555555555555554432 22344455555555555555
Q ss_pred hHHHHHHHHHHHC
Q 042609 249 DWAWSVCEKMIET 261 (540)
Q Consensus 249 ~~a~~~~~~m~~~ 261 (540)
++|...|+..++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0067 Score=57.35 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIAL-FSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
|-.+++..-+.++.+.|+.+|....+... .+..+|-..... |...++.+.|..+|+...+. ++.+...|..-+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-----~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-----CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 44555666666778889999988874322 134455544444 33356777799999998764 456777788888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDS----EKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
..+...++.+.|..+|+..+.. + +.. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999998876 3 333 47888888888889999888888887763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.023 Score=49.37 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI 273 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 273 (540)
....|..+...|...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+.+.++.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 566788888899999999999999999976542222 4678888889999999999999999998863 2345666777
Q ss_pred HHHHHhcCCHHHHHHH
Q 042609 274 ISWFCKGGKAKEAHVV 289 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~ 289 (540)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7788887775554433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00069 Score=50.96 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHSR-LSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555555554211 1233333355555555555555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.008 Score=56.81 Aligned_cols=128 Identities=10% Similarity=0.120 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA-YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
|..+|...-+.+..+.|..+|.+..+.+ ..+...|-..... |...++.+.|..+|+...+. +.-+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444445445555555555554321 1112222222222 11233344455555555443 2224444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+.++.+.|..+|++.... +.++. ..|...++.-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555543 11111 3555555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0068 Score=59.47 Aligned_cols=105 Identities=16% Similarity=-0.020 Sum_probs=87.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA 283 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 283 (540)
...+...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667899999999999998865 5577888889999999999999999999999874 34677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 284 KEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 284 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
++|...|++..+.+ |+.......+..+
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 99999999998855 6666655555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.19 Score=46.26 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=32.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 379 VISAYSKAGDMTPAMEMLKLMRSR--GLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+..-|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 344566666666666666666654 223334445555666666666666666555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00079 Score=50.66 Aligned_cols=81 Identities=25% Similarity=0.308 Sum_probs=38.9
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 386 AGDMTPAMEMLKLMRSRGL-KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALK 464 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 464 (540)
.|+++.|+.+++++.+... .++...+..+..+|.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555666666666555422 11233344455566666666666666655 21111 122333344555666666666666
Q ss_pred HHHH
Q 042609 465 LLNE 468 (540)
Q Consensus 465 ~~~~ 468 (540)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=49.41 Aligned_cols=84 Identities=6% Similarity=-0.005 Sum_probs=40.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..|++++|..+|+.+....+. +..-|-.|...+-..|++++|+..|....... +-|...+-.+..++...|+.+
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~-----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW-----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 445555555555554444443 44444455555555555555555555544433 234444444444444445555
Q ss_pred HHHHHHHHHH
Q 042609 250 WAWSVCEKMI 259 (540)
Q Consensus 250 ~a~~~~~~m~ 259 (540)
.|.+.|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5544444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.15 Score=47.00 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 414 LMSGYANGGQMEEACEILNEAKKN--HSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+..-|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444466666666666666666654 11223345556666666677766666665544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.091 Score=49.84 Aligned_cols=28 Identities=0% Similarity=-0.077 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhc
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIG 188 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~ 188 (540)
|....+.+-..+++++|...|....+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~ 65 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCY 65 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4445555555566777776666555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.032 Score=48.50 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGY 418 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 418 (540)
+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+++..+.... +...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 55555666667777777777777665432222 345666666777777777777777766654211 344455555556
Q ss_pred HhcCCHHH
Q 042609 419 ANGGQMEE 426 (540)
Q Consensus 419 ~~~g~~~~ 426 (540)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55555433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.022 Score=47.53 Aligned_cols=99 Identities=8% Similarity=-0.021 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+......+...+...|++++|..+|+-+.... +-+..-|-.|..+|-..|++++|+..|........ -|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 44556667777889999999999999998765 34556667777788888999999999999998874 67888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 042609 276 WFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~ 296 (540)
++.+.|+.+.|.+.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999987653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=44.83 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=41.5
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
+.|++++|...|+.+.+..+. +...+..+...|.+.|++++|.++++++.... |+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-----NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 456677777777777776655 67777777777777777777777777776653 554444443
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.018 Score=49.84 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 374 AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP--DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
..|..+...+...|++++|+..|++.......+ ...+|..+-..|...|+.++|...++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555556666666666666665442221 12355666666666666666666666666542 222344444444
Q ss_pred HHH-------hcCCHHHHHHHH
Q 042609 452 GYC-------KLEEFDCALKLL 466 (540)
Q Consensus 452 ~~~-------~~g~~~~A~~~~ 466 (540)
.|. ..|++++|...+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 444 455555443333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.03 Score=51.43 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=79.6
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 285 (540)
-+.+.++|++|++.|.+.++.. +-|.+-|..-..+|++.|.++.|++=.+..+..+ +--..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3567889999999999988864 5577778888889999999999988888877753 2345678889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLIS 310 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~ 310 (540)
|++.|++..+ +.|+..+|-.-|.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 9999888776 5588877654443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.21 Score=48.04 Aligned_cols=267 Identities=13% Similarity=-0.004 Sum_probs=124.4
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
+..++.+|+..+....++.++ ++.-|..=...+...|++++|+--.+.-.+.. +-....+.-.-+++...++..
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd-----~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPD-----NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCcc-----chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 445566677777777777665 66667666677777777777776665544321 011112222233333333444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQSVVAFLISSLCQEDETVKLALDMLDD 328 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 328 (540)
+|.+.++ +...| ....|+..++.+..... .|...+|-.+=..+....|+.++|...--.
T Consensus 135 ~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 4433333 00000 11111222222111111 133333333322233333555555554444
Q ss_pred hHhccCCCCcccHHHHHHHHH--cCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCChhHHH
Q 042609 329 FSGEARKYAIKPFSSVIRSLC--RMKDVHGAKTLLSKMISEGPPPGNAVFNSV-------------ISAYSKAGDMTPAM 393 (540)
Q Consensus 329 m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------------i~~~~~~g~~~~A~ 393 (540)
..+.. ....+...+++.+ -.++.+.+...|++.+..+ |+...-..+ -+-..+.|++.+|.
T Consensus 195 ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 43322 1122333333332 3456666666666665533 332211111 12234566666776
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCHHHHHHHHH
Q 042609 394 EMLKLMRSR---GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV-TYHTL--IRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 394 ~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--i~~~~~~g~~~~A~~~~~ 467 (540)
+.+.+.+.. ++.|+...|........+.|+.++|+.--++..+. |.. ....+ ..++.-.++|++|.+-|+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665543 34455555655555666666666666666665554 221 12222 223444556666666666
Q ss_pred HHHH
Q 042609 468 EMKD 471 (540)
Q Consensus 468 ~m~~ 471 (540)
+..+
T Consensus 346 ~a~q 349 (486)
T KOG0550|consen 346 KAMQ 349 (486)
T ss_pred HHHh
Confidence 6553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.044 Score=56.37 Aligned_cols=133 Identities=11% Similarity=-0.110 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHHC-
Q 042609 196 TVEILNELIALFSKL-----GKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR--------KIFDWAWSVCEKMIET- 261 (540)
Q Consensus 196 ~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~--------~~~~~a~~~~~~m~~~- 261 (540)
|...|...+.+.... +..++|+.+|++..+.. +-....|..+..++... .++..+.+........
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 666666666654332 23666777777766654 45555555543333221 1122333333332222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 262 GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 262 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
....+...|.++.-.+...|++++|...+++..+.+ |+...|..+-..+... |+.++|.+.+++....
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~-G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELK-GDNRLAADAYSTAFNL 482 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence 122344556655555555677777777777766655 4544444444444444 6777777776665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.35 Score=49.58 Aligned_cols=235 Identities=14% Similarity=0.008 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCCHHHHHHHH-------HHHHhCCChhHHHHHHHHHHHCCCCCC
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGD-YGCVANQETYYFTI-------EALSRRKIFDWAWSVCEKMIETGSLPD 266 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~g~~p~~~t~~~ll-------~~~~~~~~~~~a~~~~~~m~~~g~~p~ 266 (540)
|.+..|..|.......-.++.|...|-+... .|++.-.. ...+. ..-+--|++++|+++|-.|.++.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 6789999999988888889999998887755 23321111 11111 111223788999998887766532
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP----QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
.|..+.+.|++-...++++. .|-..| ...|+.+-..++.. ..|++|.+.|..-.. -.
T Consensus 766 ------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~-~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEM-MEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccc---------hH
Confidence 56677777887666655542 221111 22344444444443 566666666554211 12
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG 422 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 422 (540)
..+.++.+..++++-+.+-.. ++-+....-.|.+++.+.|.-++|.+.|-+.. .|- ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHH
Confidence 344555555555444433333 23345555666777777777777766553221 111 2344455555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTY--------------HTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
++.+|.++-++..- |...+. .--|..+-+.|+.=.|-+++.+|.
T Consensus 893 QW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 66666555443221 111110 112445566666666666666665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.14 Score=52.82 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=70.3
Q ss_pred CCCCcccHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 042609 334 RKYAIKPFSSVIRSLCRM-----KDVHGAKTLLSKMISEGPPPG-NAVFNSVISAYSKAG--------DMTPAMEMLKLM 399 (540)
Q Consensus 334 ~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g--------~~~~A~~~~~~m 399 (540)
...+...|...+.+.... ++.+.|..+|++..+. .|+ ...|..+..+|.... ++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 445566677777765432 2256777777777764 343 334444433332211 112222222222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 400 RSR-GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 400 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
... ....+...|.++.-.....|++++|...++++.+.. |+...|..+...|...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 221 112233455555444445566666666666666653 45666666666666666666666666666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.006 Score=43.54 Aligned_cols=63 Identities=29% Similarity=0.446 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
+.|++++|..+|+.+.... +-+...+..+..+|.+.|++++|..+++++... .|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4555666666666655543 224455555666666666666666666665543 34444444443
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.56 Score=44.92 Aligned_cols=295 Identities=15% Similarity=0.080 Sum_probs=168.9
Q ss_pred chHHHHHHHHH--hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHH-
Q 042609 159 GVVDALLKAIC--SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALF--SKLGKGKAAFEVFNKFGDYGCVANQE- 233 (540)
Q Consensus 159 ~~~~~li~~~~--~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~g~~p~~~- 233 (540)
+-|+.|-.++. ..|+-..|+++-.+....-.. |....-.|+.+- .-.|+++.|.+-|+-|... |...
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llss-----DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRl 154 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSS-----DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRL 154 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhc-----cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHH
Confidence 34566555443 346666777777665543332 555555555543 3479999999999999852 3221
Q ss_pred -HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHH--HHHHH
Q 042609 234 -TYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQSV--VAFLI 309 (540)
Q Consensus 234 -t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~--~~~ll 309 (540)
-+..|.-..-+.|..+.|.++-+..-... +.=...+.+.+...|..|+|+.|+++++.-+...+ .++..- -..++
T Consensus 155 lGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 155 LGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 12333334457788888888877765542 22345677888889999999999999887665432 233221 11222
Q ss_pred HHHH--hCCchHHHHHHHHHHhHhccCCCCccc-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 310 SSLC--QEDETVKLALDMLDDFSGEARKYAIKP-FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKA 386 (540)
Q Consensus 310 ~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 386 (540)
.+-. ..+-+...|...-.+. ....||... -..-..++.+.|+..++-.+++.+-+..+.|+.. .+..+.+.
T Consensus 234 tAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~ 307 (531)
T COG3898 234 TAKAMSLLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARS 307 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcC
Confidence 2211 1123344444443332 224455443 2334566777888888888888777655555432 22223344
Q ss_pred CChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHH
Q 042609 387 GDMTPAMEMLKLMRSR-GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK-LEEFDCAL 463 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~ 463 (540)
|+ .+.+-++...+. .++| +..+-..+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++.
T Consensus 308 gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 308 GD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred CC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHH
Confidence 43 333333332221 1233 4455666666777777777777666665554 5677777777765443 47777777
Q ss_pred HHHHHHHHC
Q 042609 464 KLLNEMKDV 472 (540)
Q Consensus 464 ~~~~~m~~~ 472 (540)
..+.+..+.
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 777776654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0047 Score=43.66 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=31.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
.+.+.|++++|...|+.+.+..+. +...|..+...+...|++++|+..|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-----NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666666655543 556666666666666666666666666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.037 Score=47.87 Aligned_cols=92 Identities=12% Similarity=-0.016 Sum_probs=59.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP--GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
.|..+...+...|++++|...|++.......+ ...++..+...|...|++++|+..++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 35566666777788888888888887543222 23467777788888888888888888877652 2234455555556
Q ss_pred HH-------hcCCHHHHHHHHH
Q 042609 418 YA-------NGGQMEEACEILN 432 (540)
Q Consensus 418 ~~-------~~g~~~~A~~~~~ 432 (540)
|. ..|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 65 5566654444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.37 Score=49.01 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=17.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 255 CEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 255 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
+++|++.|-.|+... +...++-.|++.+|-++|.+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 445555555555433 23334445566666665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.18 Score=45.45 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS---- 416 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---- 416 (540)
.+.++..+.-.|.+.-....+.+..+...+-+......|.+.-.+.|+.+.|...|+...+..-+.|..+.+.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555555666666777777777765566677777777777778888888888876655433334444443332
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 417 -GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 417 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
.|.-.+++..|...+.++...+ .-|+..-|.-.-+..-.|+..+|.+..+.|+.. .|...+-++++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3445667777777777766654 224444443333333457777888888887765 34444444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.58 Score=42.33 Aligned_cols=62 Identities=3% Similarity=-0.105 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
+-+.++..+.-.|.+.-.+.++++..+..-+.+......+.+.-.+.|+.+.|...|+...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444444444455555555555554444334444444455555555555555555554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.079 Score=42.56 Aligned_cols=87 Identities=23% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS----PVTYHTLIRGYCK 455 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~ 455 (540)
++-..|+.++|+.+|++....|.... ...+-.+-..|...|++++|..++++..... |+ ......+..++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 44455555555555555555554432 2233344445555555555555555555431 22 1111222234445
Q ss_pred cCCHHHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMK 470 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~ 470 (540)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555554433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.064 Score=51.31 Aligned_cols=133 Identities=16% Similarity=0.072 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMR----SRGLK-PDVYTYTGLMSGYANGGQMEEACEILNEAKK----NHS-RLSPV 444 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~ 444 (540)
.|..|-+.|.-.|+++.|+...+.-. +.|-+ .-...+..|-+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44555555556677777776654422 22221 1234566777777778888888877765432 221 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKD----V-GVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+..+|.+.|.-..++++|+.++.+-+. . ...-....+++|-.+|. ..|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~-alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN-ALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH
Confidence 566677777777778888777765321 0 11224566777777775 666778888777665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.013 Score=41.84 Aligned_cols=64 Identities=23% Similarity=0.214 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK-IFDWAWSVCEKMIE 260 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~ 260 (540)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666665543 334455555555666665 46666666655544
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.35 Score=49.17 Aligned_cols=80 Identities=8% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGK--GKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 199 ~~~~li~~~~~~g~--~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
-++..=.+|.+-.+ +-+.+.-+++|+++|-.|+.... ...|+-.|.+.+|-++|.+ .|.. |..+.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHH
Confidence 34444455555443 34555667788888887887643 3456677888888888754 4432 233445
Q ss_pred HHhcCCHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVY 290 (540)
Q Consensus 277 ~~~~g~~~~A~~~~ 290 (540)
|.....++.|.++.
T Consensus 668 yTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.023 Score=51.47 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC----------------ChhHHHH
Q 042609 195 LTVEILNELIALFSKL-----GKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK----------------IFDWAWS 253 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~ 253 (540)
.|-.+|-+.+..+... +.++-....++.|.+.|+..|..+|+.||..+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4666777777666543 556667777889999999999999999998876542 2234677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 254 VCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 254 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
++++|...|+.||..+-..|+.++++.+.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777777777777777776664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.042 Score=50.47 Aligned_cols=152 Identities=21% Similarity=0.179 Sum_probs=97.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
.-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|+++.|++=.+......-. -..+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34667889999999999988852 346666777788899999999998887777765211 3568888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRGY-CKLEEFD---CALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKL 501 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l 501 (540)
+|.+.|++.++. .|+-.+|-.=+... -+.+... .+..-++.....|..|+....-. ..+ ..-....++
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~--~~l----~nnp~l~~~ 238 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN--GDL----MNNPQLMQL 238 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc--ccc----ccCHHHHHH
Confidence 999999888875 56666665444332 2233332 33333443334444455433211 111 122455556
Q ss_pred HHHHHH
Q 042609 502 LEDMRL 507 (540)
Q Consensus 502 ~~~m~~ 507 (540)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 666666
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.22 Score=40.00 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 042609 203 LIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD----SEKVGKIISW 276 (540)
Q Consensus 203 li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 276 (540)
+...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++...... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44556667888888888888877775443 3355566667777788888888887776642 32 1122222335
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~ 294 (540)
+...|+.++|...+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 566677777776665443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.014 Score=41.10 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
..+...|++++|+..|++..+.. +-+...+..+..++...|++++|..+|+.+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555543 22444555555555555555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.078 Score=49.35 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV----YTYTGLMSGYANGGQMEEACEILNEAKKNHS--RLSPVTYHT 448 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ 448 (540)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.-. ......+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444444556666666666666554 2222 3444555556666666666666666654310 011233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 449 LIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
+...|...|+.++|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455566666666666665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.47 Score=42.42 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYG--CVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
.+-.....+...|++++|++.|+.+.... -+--....-.++.++-+.|+++.|...++..++.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344444555666666666666665431 0111233344455555555555555555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.027 Score=47.47 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE-----TGSLPDSEK 269 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 269 (540)
.+...++..+...|++++|+++.+.+.... +-|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 355566666667777777777777776654 45666777777777777777777777776643 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.33 Score=44.95 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR---KIFDWAWSVCEKMIETGSLPDSEKVGK 272 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ 272 (540)
|...|-.|...|...|++..|..-|.+..+.. ++|...+..+..++... ..-.++..+++++++.. +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 77888888888888888888888888886643 45666655555554332 34567888888888764 245556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLIS 310 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 310 (540)
|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 6677888888888888888888754 44444544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.093 Score=42.59 Aligned_cols=97 Identities=11% Similarity=0.181 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
|..++..+|.++++.|+++....+++..- |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566666677777777766666665432 2222110 00000 1112335678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q 042609 452 GYCKLEEFDCALKLLNEMK-DVGVQPNVDEYNKLIQSL 488 (540)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~ 488 (540)
+|+..|++..|+++.+... ..++.-+...|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888888876 567777788888887653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.032 Score=46.97 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555443 234445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.027 Score=40.22 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE-EFDCALKLLNEMK 470 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 470 (540)
+|..+-..+...|++++|+..|.+.++.. +-+...|..+..+|.+.| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444432 123344444444444444 3444444444433
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.11 Score=48.33 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIETGS--LPDSEKVGK 272 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ 272 (540)
.|+..+..+.+.|++++|+..|+.+.+.. |+ ...+-.+..+|...|++++|...|+.+++.-. ......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666665532 32 23555566666666666666666666655311 111233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 273 IISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+...+...|+.++|..+|+.+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4455556666666666666666543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.1 Score=42.40 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
|..++.++|.++++.|+++....+.+.. .|+..+... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567899999999999999999998755 344333210 0000 1123356788888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 042609 417 GYANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 455 (540)
+|+..|++..|.++++...+. +++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888888888888877653 566677888888765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=39.91 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~ 294 (540)
++.++.+.|+++.|...|++..
T Consensus 48 la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 48 LAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.049 Score=39.36 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=37.6
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG 227 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g 227 (540)
.+.+.+++++|.++++.+....+. ++..|......+.+.|++++|.+.|+...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-----DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345566777777777777766654 66667677777777777777777777766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.2 Score=41.41 Aligned_cols=100 Identities=15% Similarity=0.026 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 407 DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---EFDCALKLLNEMKDVGVQPNVDEYNK 483 (540)
Q Consensus 407 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ 483 (540)
|...|-.|-..|...|+...|...|.+..+.. .+|+..+..+..++.... .-.++..+|+++... .|+...-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 56667777777777777777777777666653 345555555555443322 234666777776654 344444444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
++..-....|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 44332336667777777777776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.075 Score=38.37 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.|.+.+++++|.++++.+...+ +.+...|......|.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555555443 22334444444555555555555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.3 Score=41.69 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-LKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY-HTL 449 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l 449 (540)
-..+|.+.|+...+..-++.|..+|-+..+.| +.+++..++++|.-++. |+..-|..+|+--... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567777777777777888888888887777 56777778888877664 4556677777654433 2444333 445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 450 IRGYCKLEEFDCALKLLNEMKDVGVQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+..+...++-+.|..+|+....+ +..+ ...|..+|. |-..-|+...|..+-++|.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~-YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIE-YESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHH-HHHhhcchHHHHhHHHHHHHH
Confidence 55666777777788888754422 1112 456777774 445677777777777777654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=45.67 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEG-PPPGN-----AVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
+..++...+-.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.++++.+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 5667777778888888888888776532 22111 234444444433 45678899999999987 688777
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 411 YTGLM-SGYANGGQMEEACEILNEAKKNH---SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486 (540)
Q Consensus 411 ~~~ll-~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 486 (540)
|...- +.+...|++++|.+.|++..... -+.....+--+.-.+.-.++|++|.+.|..+.+.. ..+...|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 76554 34567899999999999866421 12234555666677888999999999999999643 335666666665
Q ss_pred HHHHhCCCH-------HHHHHHHHHHH
Q 042609 487 SLCLKALDW-------RTAEKLLEDMR 506 (540)
Q Consensus 487 ~~~~~~g~~-------~~A~~l~~~m~ 506 (540)
++....|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 555567777 88888888775
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.26 Score=44.93 Aligned_cols=114 Identities=18% Similarity=0.364 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 370 PPGNAVFNSVISAYSK-----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
+-|-.+|..++..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 4466667776666653 35566666667777777777777777777776543221 111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
.+....-.|-+ +-+-+..++++|...|+.||..+-..|+.++.+.+--..+..++.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 11111122222 224467777888888888888877777777764443333333333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.4 Score=42.63 Aligned_cols=283 Identities=13% Similarity=0.098 Sum_probs=156.1
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH--hh--CCCCC-CHHHHHH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTV----EILNELIALFSKLGKGKAAFEVFNKF--GD--YGCVA-NQETYYF 237 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m--~~--~g~~p-~~~t~~~ 237 (540)
-+|+.|+.......|+...+.|.. |. ..|..|..+|.-.+++++|++....= .. .|-+. ...+-..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 457888888888888888887654 33 34666666777777888888764321 00 00000 0111111
Q ss_pred HHHHHHhCCChhHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 238 TIEALSRRKIFDWAWSVCEKM----IETGS-LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m----~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
|-..+--.|.+++|.-...+- .+.|- ......+..|...|...|+--.... -.+.|-.+..++
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-------- 168 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-------- 168 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH--------
Confidence 222223334455544332211 11110 1122344455566655543211000 001122222221
Q ss_pred HhCCchHHHHHHHHHHh----Hhcc-CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHH
Q 042609 313 CQEDETVKLALDMLDDF----SGEA-RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI----SEGPP-PGNAVFNSVISA 382 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m----~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~li~~ 382 (540)
..++.|.++|.+= ...| ....-..|..+.+.|.-.|+++.|....+.-. +.|-. .....+..+-++
T Consensus 169 ----~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 169 ----SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC 244 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence 1223333333221 1111 01113446677777777889999988776543 22322 233467788888
Q ss_pred HHhcCChhHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHH
Q 042609 383 YSKAGDMTPAMEMLKLMR----SRGL-KPDVYTYTGLMSGYANGGQMEEACEILNEAKKN----H-SRLSPVTYHTLIRG 452 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~----~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~ 452 (540)
+.-.|+++.|.+.|+... +.|- .....+..+|-+.|.-..++++|+.++.+-... + ..-....|-+|..+
T Consensus 245 hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 245 HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999887643 2221 234566778888888888999999988764431 1 11245678889999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~ 470 (540)
|...|..++|+.+.+.-+
T Consensus 325 ~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 325 FNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 999999999988877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.43 Score=47.10 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV----YTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666667777776666666555 3442 34666666666666666666666666664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.5 Score=40.13 Aligned_cols=129 Identities=12% Similarity=0.225 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--CC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 042609 213 GKAAFEVFNKFGDYGCVANQETYYFTIEALSR--RK----IFDWAWSVCEKMIETGS---LPDSEKVGKIISWFCKGGK- 282 (540)
Q Consensus 213 ~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~- 282 (540)
+++.+.+++.|.+.|++.+.++|-...-.... .. ....|..+|+.|++.-. .++..++.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788888888888888887775444443 22 35568888888887632 2445555555443 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCch--HHHHHHHHHHhHhccCCCCcccHHH
Q 042609 283 ---AKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDET--VKLALDMLDDFSGEARKYAIKPFSS 343 (540)
Q Consensus 283 ---~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ 343 (540)
.+.++.+|+.+.+.|+..... -+.+-+-+++..... ...+.++++.+.+.|++.....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 355677777777767655544 233333333332111 3355666666666666655555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.33 E-value=3.1 Score=43.51 Aligned_cols=291 Identities=12% Similarity=0.051 Sum_probs=142.0
Q ss_pred hhhhHhhcccc------cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 042609 147 ENLVCFFKWVT------SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVF 220 (540)
Q Consensus 147 ~~ll~~~~w~~------~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 220 (540)
.-+++.-.|+. ...|......+.+..+. .-..+.+.+.+.-... ...-.+|..+....-..|+++-|..++
T Consensus 454 ~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~--~~~~iSy~~iA~~Ay~~GR~~LA~kLl 530 (829)
T KOG2280|consen 454 SVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAK--LTPGISYAAIARRAYQEGRFELARKLL 530 (829)
T ss_pred HHHHHHHHHhCCccccccHHHHHHHHHHHhccCc-cchHHHHHHHHHhccc--CCCceeHHHHHHHHHhcCcHHHHHHHH
Confidence 34556667743 23455555555554332 1223334443322221 124577888888888999999999998
Q ss_pred HHHhhCCC----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 221 NKFGDYGC----VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 221 ~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
+.=...+. -.+..-+...+.-+.+.|+.+....++-.|...- +...+... ..+.-.|..+|.+..+.
T Consensus 531 e~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 531 ELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLALSLYRQFMRH 601 (829)
T ss_pred hcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhhhHHHHHHHHh
Confidence 77544331 1244457778889999999999999988876641 11111111 12223344444443321
Q ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHHHH--HHh----HhccCCCCcccHHHHHHHHHcCCC----------HHHHHHH
Q 042609 297 KMYPPQSVVAFLISSLCQEDETVKLALDML--DDF----SGEARKYAIKPFSSVIRSLCRMKD----------VHGAKTL 360 (540)
Q Consensus 297 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~--~~m----~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~ 360 (540)
.- ..+ +..++.. ++..++..-| +.. ...+..|+ .......|.+... -.+-..+
T Consensus 602 ~~---~~~----l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l 670 (829)
T KOG2280|consen 602 QD---RAT----LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKL 670 (829)
T ss_pred hc---hhh----hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 10 000 0011111 1111111111 000 00111122 2222233333222 1111112
Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 361 LSKMI-SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 361 ~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
.+.+. +.|..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.++
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---- 742 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---- 742 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----
Confidence 22222 11222222334444445556677777766655554 4566667666777777777666555444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+.-|.-.+.+|.+.|+.++|.+++.+..
T Consensus 743 --sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 743 --SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred --CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 23445556677777777777777766554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.077 Score=38.94 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKN----HS-RLS-PVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555544432 10 011 2345555555555555555555555543
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.083 Score=38.75 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGV-LT-VEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.|+.+...+...|++++|...|++..+.....+.. |+ ..+++.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666777788888887777776652221111 22 4567777777777777777777777654
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.6 Score=35.15 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
.+...+......|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445566666777777777777766543 567777777777777777777777777777766653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.86 Score=43.22 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCC-c
Q 042609 248 FDWAWSVCEKMIETGSLPDSEKVGKIISWFCK--GG----KAKEAHVVYTLAREKKM---YPPQSVVAFLISSLCQED-E 317 (540)
Q Consensus 248 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~-~ 317 (540)
+++...+++.|++.|+.-+..+|-+..-.... .. ...+|..+|+.|++... .++...+..++..-.... .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 56678899999999998888777654433333 22 35678888888887643 244555555554421111 1
Q ss_pred hHHHHHHHHHHhHhccCCCCcc--cHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIK--PFSSVIRSLCRMKD--VHGAKTLLSKMISEGPPPGNAVFN 377 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~ 377 (540)
..+.++.+|+.+...|...+-. ..+.++..+..... ..++.++++.+.+.|++.....|.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 1244455555555544433222 11222222111111 234555555555555555444444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.4 Score=43.41 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKI-ISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 292 (540)
..+.|.+++..+.+. .|+...|... .+.+...|++++|.+.|+.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~ 292 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFER 292 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444555555555543 3444333322 2334445555555555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.5 Score=46.66 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=55.1
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGN----AVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
...++.+..+|.+.|++++|...|++.++. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445899999999999999999999998885 4553 35899999999999999999999999875
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.96 Score=42.47 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=117.3
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN----SVISAYSKAGDMTP 391 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~ 391 (540)
.|...+|-..++++.+. .+.|..++.-.=.+|.-.|+.+.-...++++... -.+|...|. ...-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 37888888888888765 4557777777888888899988888888888643 233443332 33344557889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 392 AMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR----LSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 392 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
|++.-++..+-+. .|...-.++...+--.|+..++.++..+-... .+ .-..-|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9988888776643 36777777777788888888888877664432 11 111223333445566788999999998
Q ss_pred HHH-HCCCCCCHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 468 EMK-DVGVQPNVDE---YNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 468 ~m~-~~g~~p~~~~---~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.=+ +.--+.|... |.-+. +.-.+...+.+..++-+.+-++
T Consensus 272 ~ei~k~l~k~Da~a~~~~ld~d-gv~~~~d~~~kld~la~~l~d~ 315 (491)
T KOG2610|consen 272 REIWKRLEKDDAVARDVYLDLD-GVDLRSDLWRKLDKLADSLTDK 315 (491)
T ss_pred HHHHHHhhccchhhhhhhhhhh-hHHhHHHHHHHHHhhhhhhcch
Confidence 643 3322333322 22222 2222444455555555555433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.5 Score=36.32 Aligned_cols=103 Identities=15% Similarity=0.056 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPDSEKVGKI 273 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l 273 (540)
|++.---.|..+....|++.+|...|++...--+.-|....-.+.++....+++..|...++.+.+... ..+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 466666677777888888888888888877544555777777777777778888888888887766531 0122334456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 274 ISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.+.|...|...+|+..|+.....-
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC
Confidence 677777888888888887776643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.2 Score=35.35 Aligned_cols=124 Identities=14% Similarity=0.201 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
...+|..+...+.......+++.+...+. .+...++.+|..|++.+. .+..+.++. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 44566666666667777777777666553 455666777777766532 333333331 1 233334445666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL-EEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.+.++++..++.++.. |...+..+... ++++.|.+++.+- -+...|..++..
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 6666666666655422 11122333333 5666666655541 144455555543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.2 Score=35.31 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=65.0
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
++..+...+........++.+...+. .+....|.++..|++.+ .++.++.++. ..+......+++.|.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-----~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-----ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-----cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 33344444555566666666555432 26677777777777653 3444455442 123333445667777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG-GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLC 313 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 313 (540)
+.+.++++.-++.++.. +...+..+... ++.+.|.+++.+ ..+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 77777766666655421 12223333333 666666666554 123445555554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.27 Score=41.46 Aligned_cols=85 Identities=11% Similarity=-0.050 Sum_probs=58.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..|++++|..+|..+-...+- |..-|..|...+-..+++++|+..|...-..+ .-|...+-....++...|+.+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 567888888888777766554 66677777777777788888888777664433 234444555666677777777
Q ss_pred HHHHHHHHHHH
Q 042609 250 WAWSVCEKMIE 260 (540)
Q Consensus 250 ~a~~~~~~m~~ 260 (540)
.|+..|...+.
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=4.8 Score=38.88 Aligned_cols=297 Identities=15% Similarity=0.087 Sum_probs=188.2
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCCHHH--HHH
Q 042609 199 ILNELIALFSK--LGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL--SRRKIFDWAWSVCEKMIETGSLPDSEK--VGK 272 (540)
Q Consensus 199 ~~~~li~~~~~--~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ 272 (540)
-|.+|-.++.. .|+-..|.++-.+-.+. +..|..-+..++.+- .-.|+++.|.+-|+-|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35666555543 57777777776655321 345666666666554 3469999999999999863 33222 223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc-CCCCccc--HHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEA-RKYAIKP--FSSVIRSL 348 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~--~~~li~~~ 348 (540)
|.----+.|..+.|.++-+..-..- |. .-.+...+...|.. |+++.|+++++.-.... +.+++.- -..|+.+-
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 3333456788888888877765543 32 34566789999998 99999999998866533 2233221 22333332
Q ss_pred Hc---CCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 349 CR---MKDVHGAKTLLSKMISEGPPPGNAVFN-SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 349 ~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 424 (540)
+. ..+...|...-.+..+ +.||.+--. .-..++.+.|++.++-.+++.+-+....|+. +. +..+.+.|+.
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc
Confidence 21 2345566666555544 556654333 3357889999999999999999988555553 22 2223455543
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 425 EEACEILNEAKKN-HSRL-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 425 ~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
+..-+++..+. .++| +...-..+..+-...|++..|..--+..... .|....|..|-+.-....||-.++...+
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 33333333321 1233 4567777888888999998888777766643 5788888777765444568999999999
Q ss_pred HHHHHCCCCC
Q 042609 503 EDMRLKGLHL 512 (540)
Q Consensus 503 ~~m~~~g~~p 512 (540)
-+-.+.--.|
T Consensus 387 Aqav~APrdP 396 (531)
T COG3898 387 AQAVKAPRDP 396 (531)
T ss_pred HHHhcCCCCC
Confidence 8887664433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.9 Score=35.98 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 042609 369 PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH---SRLSPVT 445 (540)
Q Consensus 369 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~ 445 (540)
..|++..--.|..++...|+..+|...|++...--..-|....-.+.++....++...|...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3455555556666666777777777777666544344456666666666666677777777766666542 1222 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.-.+.+.|...|..+.|...|+.....
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 334556666677777777777766654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.46 Score=40.06 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
-+...|++++|+.+|+-+.-.+ |...-|..-+.++++..+.+++|+..|......+. -|...+-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3456778888888887776644 44455555666666666777777777766554432 34455556677777778888
Q ss_pred HHHHHHHHHHH
Q 042609 356 GAKTLLSKMIS 366 (540)
Q Consensus 356 ~a~~~~~~m~~ 366 (540)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88887777765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.5 Score=37.11 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..-..+|....++++|-..+.+..+. ..-|...|+ ..+.++.|.-+.++|.+. .--...|+-...+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345666667777888888888877776531 122222222 122344455555555443 1122345566677
Q ss_pred HHhcCCHHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLA 293 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m 293 (540)
|..+|..+.|-..+++.
T Consensus 101 Y~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHhCCcchHHHHHHHH
Confidence 88888887777666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.2 Score=40.87 Aligned_cols=89 Identities=12% Similarity=-0.054 Sum_probs=37.5
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhCCCh
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG--CVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g--~~p~~~t~~~ll~~~~~~~~~ 248 (540)
.|++..|...|....+..+.....||. +-=|...+...|++++|..+|..+.+.- .+--..++--|.....+.|+.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344445555554444444332222222 2224444445555555555554443321 011123344444444444555
Q ss_pred hHHHHHHHHHHHC
Q 042609 249 DWAWSVCEKMIET 261 (540)
Q Consensus 249 ~~a~~~~~~m~~~ 261 (540)
++|..+|+++++.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.05 E-value=6.4 Score=38.44 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=86.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEG---PPPGNAVFNSVISAYSK---AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
.++-+|....+++...++.+.+...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445677777777777777776431 00011111122334445 6777777777777555545566667766666
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcC-CHHHHHHHH---HH-HHHCCCCC---
Q 042609 417 GYAN---------GGQMEEACEILNEAKKNHSRLSPVT---YHTLIRGYCKLE-EFDCALKLL---NE-MKDVGVQP--- 476 (540)
Q Consensus 417 ~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g-~~~~A~~~~---~~-m~~~g~~p--- 476 (540)
.|-. ....++|...|.+.-+.. ||..+ +.+|+....... .-.+..++- .. ..+.|..-
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 223677777777665542 44322 222333222111 111222322 22 22444333
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
+--.+.+++.+.. -.|+.++|.+..++|.+..
T Consensus 304 dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASV-LAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcC
Confidence 3334446666654 6789999999999998763
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.99 E-value=12 Score=41.49 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 042609 370 PPGNAVFNSVISAY----SKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-- 443 (540)
Q Consensus 370 ~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 443 (540)
.|+...+.....+| ...+++++|--.|+..-+ ..--+.+|..+|++.+|+.+..++.... +.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHH
Confidence 35555554444433 345666666655554321 1234667777788888877777765421 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.+-..|+.-+...++.-+|-++..+.... | .-.+..|| ++..|++|..+...-.
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~-ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLC-KAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHh-hHhHHHHHHHHHHhcc
Confidence 22256677777888888888887777642 1 12222345 5556777776665444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.97 Score=43.68 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=89.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 344 VIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQ 423 (540)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 423 (540)
-.+.|.+.|++..|..-|++.... +. |.+.-+.++..... ..-..+++.|.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 357788899999999888886542 11 00111111111111 1124467777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCH-HHHHHHH
Q 042609 424 MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDW-RTAEKLL 502 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~-~~A~~l~ 502 (540)
+.+|++.-.+.++.+ ++|....--=..+|...|+++.|...|+++++. .|+......=|..+..+..++ +...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888876 567776666678888888999999999988875 565555554444444333333 3346777
Q ss_pred HHHHHC
Q 042609 503 EDMRLK 508 (540)
Q Consensus 503 ~~m~~~ 508 (540)
..|-..
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 777543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.6 Score=42.34 Aligned_cols=96 Identities=20% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCC----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGV----------LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQET 234 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t 234 (540)
.+.+.+.|++..|...|+.....-...... .-..+++.|...|.+.+.+.+|++.-++.+..+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 456677788888888777644322211100 123344455555555555555555555555443 344444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
.--=-.+|...|+++.|+..|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444455555555555555555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.9 Score=42.21 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
.-.+.+++-+-+.|..+.|+++...-. .-.+...++|+++.|.++.++ ..+...|..+-...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 335555555555555555555432211 122344455555555554332 22344555555544
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
... |+++.|++.|++.. -|..++-.|.-.|+.++..++.+.....|- +|....++...|++++.
T Consensus 358 L~~-g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 358 LRQ-GNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHT-TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHc-CCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 444 55555555555432 245555555555665555555555444331 23333444444555555
Q ss_pred HHHH
Q 042609 393 MEML 396 (540)
Q Consensus 393 ~~~~ 396 (540)
.+++
T Consensus 422 v~lL 425 (443)
T PF04053_consen 422 VDLL 425 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.86 E-value=10 Score=39.96 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 403 GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
|..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++-+++-+.++. +.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence 433445566666777888999999998877654 47889999999999999999998888777662 33455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
-++.. |.+.|+.++|.+++-+..
T Consensus 749 PFVe~-c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 749 PFVEA-CLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHH-HHhcccHHHHhhhhhccC
Confidence 56655 458889999999987764
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.58 Score=43.51 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE-----TGSLPDSEKVGKI 273 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 273 (540)
++..++..+...|+++.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444444444444444444444444433 34444444444444444444444444444433 2455554444444
Q ss_pred HHH
Q 042609 274 ISW 276 (540)
Q Consensus 274 i~~ 276 (540)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.54 E-value=2 Score=45.37 Aligned_cols=178 Identities=14% Similarity=0.147 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHH
Q 042609 270 VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLIS---SLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIR 346 (540)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 346 (540)
...-++...+...++.|..+-+ ..+ .+......+.. .++...|++++|..-|-+-... .--..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------le~s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------LEPSEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc------CChHHHHH
Confidence 4456677777777777776643 333 22333222222 2233337777777766554432 11234566
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEE 426 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 426 (540)
-|-.......-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 666666666666667777777664 45555677777777777777666655443 2222 1123445555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
|..+-..... +......++ -..|++++|++.+..|.
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 6655544332 223333333 35577777777777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.4 Score=34.60 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=72.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCchHHHHHHHHHHhHh
Q 042609 253 SVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ-EDETVKLALDMLDDFSG 331 (540)
Q Consensus 253 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~~a~~~~~~m~~ 331 (540)
++.+.+.+.++.|+...+..+++.+.+.|++....++ ...++.+|.......+-.+.. ...-...|++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 4455555667777777777777777777775554443 334555555555444333222 11224445555555431
Q ss_pred ccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 332 EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
.+..+++.+...|++-+|.++.+..... +......++++-.+.++...-..+|+-..+
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2566777777777777777777664221 112223455555565555544444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.6 Score=37.97 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCH----HH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP--VTYHTLIRGYCKLEEFDCALKLLNEMK---DVGVQPNV----DE 480 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~----~~ 480 (540)
.+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|+.....|++..+.....+.. +.|-.++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666665433332 344555666666666666666655544 22211111 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCC-cHHHHHHHHHHHHHHHhhh
Q 042609 481 YNKLIQSLCLKALDWRTAEKLLEDMRLKG--------LHL-NGITRALIRAVKELEEDAI 531 (540)
Q Consensus 481 ~~~ll~~~~~~~g~~~~A~~l~~~m~~~g--------~~p-~~~t~~ll~a~~~l~~~~~ 531 (540)
|..+. +...|++.+|-++|-+....- +.| |.+.|..|-++-.+++..+
T Consensus 118 ~~gL~---~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R~eL 174 (177)
T PF10602_consen 118 YEGLA---NLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDRSEL 174 (177)
T ss_pred HHHHH---HHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCHHHH
Confidence 22222 224567777777776654221 111 2344455555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.1 Score=39.27 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS--RLSPVTYHTLI 450 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li 450 (540)
.|+.-+..| +.|++..|..-|....+... .-....+-.|..++...|++++|..+|..+.+.-. +--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 44556666666666555421 11222344455566666666666666665555310 11123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 042609 451 RGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666666543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.33 E-value=5.1 Score=37.27 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=83.7
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.....++..+|...|+......++ +...--.++..|...|+++.|..++..+...--.........-|..+.+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-----NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 334567888888888888887765 667777888889999999999999988865432222223223355556666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
...+..++....-.. +-|...-..+...|...|+.+.|...+-.+.++
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666555555555443 236677777888888888888888776665544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.4 Score=34.83 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=61.1
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.-.+.++.+++..+++-+.-+.++ .+...++-. ..+...|++.+|+.+|+++...+ |....-..|+..|....
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE---FPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC---chHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 445667888899999998887765 123334433 34678999999999999987653 33333344444444332
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEA 286 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 286 (540)
.-..=..+-+++.+.+-.|+.. .|+..+....+...|
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPA 128 (160)
T ss_pred CChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence 2222223333455554333332 344444444444333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.7 Score=33.10 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH--HHHHhCCC
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV-GVQPNVDEYNKLIQ--SLCLKALD 494 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~--~~~~~~g~ 494 (540)
.+..|+++.|++.|.+.+..- +-....||.-..++--.|+.++|++=+++..+. |-+ ......+.+. .+++..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 455667777777776666542 335566777777776677777777666666532 211 2222221111 12234566
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 042609 495 WRTAEKLLEDMRLKGLHLNGITRALIRAV 523 (540)
Q Consensus 495 ~~~A~~l~~~m~~~g~~p~~~t~~ll~a~ 523 (540)
-+.|..=|+..-+.|-..-....-.|+-|
T Consensus 131 dd~AR~DFe~AA~LGS~FAr~QLV~lNPY 159 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKFAREQLVELNPY 159 (175)
T ss_pred hHHHHHhHHHHHHhCCHHHHHHHHhcChH
Confidence 67777777766666644333333333333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.97 E-value=6.8 Score=35.38 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHH
Q 042609 270 VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLC 349 (540)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 349 (540)
|.-...+|....++++|...+.+..+.- .-+...|.+ ...++.|.-+.+++.... --+..|.-....|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA--------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA--------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH--------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 4444456667777777777666554210 111111111 134455555555554321 11233556666777
Q ss_pred cCCCHHHHHHHHHHHHHC--CCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 350 RMKDVHGAKTLLSKMISE--GPPPGNA--VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~--g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
.+|.++-|-..+++.-+. ++.|+.. .|..-+......++...|.++ |..+-+.+.+..+++
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhh
Confidence 777777666666554321 2334322 222222222233333333333 334444566666666
Q ss_pred HHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHhCCCHHH
Q 042609 426 EACEILNEAKKN----HSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKDV---GVQPNVDEYNKLIQSLCLKALDWRT 497 (540)
Q Consensus 426 ~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~g~~~~ 497 (540)
+|-..+.+-... .--++. ..|...|-.|....++..|.+.++.-.+. .-.-+..+...||.+| ..||.++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay--d~gD~E~ 245 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY--DEGDIEE 245 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh--ccCCHHH
Confidence 665555432211 111222 44666667777778889999998874422 1233567788888876 5778887
Q ss_pred HHHHH
Q 042609 498 AEKLL 502 (540)
Q Consensus 498 A~~l~ 502 (540)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 76654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.83 E-value=11 Score=37.92 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=22.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPP-PGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
.+.|+.++|.+.|++|.+.... .+......||+++...+.+.++..++.+-
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3445555555555555432111 12223344455555555555555555443
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.71 E-value=4 Score=32.87 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=69.2
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQE---TYYFTIEALS 243 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~---t~~~ll~~~~ 243 (540)
++...|+.+.|.+.|.+.....++ ....||.=..++.-.|+.++|++=+++..+..-..+.. .|..-...|-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 456778999999999999888876 88999999999999999999999999887643222322 2333344566
Q ss_pred hCCChhHHHHHHHHHHHCC
Q 042609 244 RRKIFDWAWSVCEKMIETG 262 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g 262 (540)
..|+-+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888777776665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.8 Score=40.37 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK-----DVGVQPNVDEYNKLI 485 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ll 485 (540)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444444444444444444444443 2344444555555555555555544444443 234555444444333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=4.1 Score=38.45 Aligned_cols=116 Identities=12% Similarity=-0.036 Sum_probs=76.6
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhC
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ----ETYYFTIEALSRR 245 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~----~t~~~ll~~~~~~ 245 (540)
..|+..+|...|+++.+..+. |..+++-.=.+|.-.|+.+.-...++++... -.+|. +.-....-++...
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt-----Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT-----DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred ccccccHHHHHHHHHHHhCch-----hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh
Confidence 446666777778877776665 7777888778888888887777777777543 01332 2222223344567
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
|-+++|++.-++..+.+ +.|.....++...+--.|+..++.+...+
T Consensus 189 g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred ccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 77888877777766654 35666666777777777777777776654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.21 E-value=5.6 Score=40.21 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=96.2
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...-.++++++.++.+.- +.-+. ....-.+.++..+-+.|.++.|+++-++-. .-+....+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~----i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPN----IPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHcCChhhhhhhhhhh-hhccc----CChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 334456777755554311 11111 134568999999999999999999865422 2355667889
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDML 326 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 326 (540)
+++.|.++.++ ..+...|..|.+...+.|+++-|++.|++..+ +..++--|... |+.+...++.
T Consensus 333 ~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~-g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST-GDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC-T-HHHHHHHH
T ss_pred CHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh-CCHHHHHHHH
Confidence 99999776543 35788999999999999999999999987432 33333333333 7777666666
Q ss_pred HHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q 042609 327 DDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSK 363 (540)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (540)
+.....| -++....++.-.|++++..+++.+
T Consensus 397 ~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555443 256666666667777777666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.42 Score=30.43 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
+|..+...|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666667777777777666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.84 E-value=5.8 Score=32.76 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=30.3
Q ss_pred hcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 385 KAGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH 438 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g 438 (540)
+.|++++|.+.|+.+..+-. .-....--.|+.+|.+.+++++|...+++.++..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 55666666666666655511 1123444555666666666666666666666553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.74 E-value=2.3 Score=39.69 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 369 PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR---GLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP 443 (540)
Q Consensus 369 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 443 (540)
.+....+...++..-....++++++.++-+++.. ...|+ ..+|-.++. .=+.++++.++..=+..|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccch
Confidence 3344455555555555566666666666666543 11111 222222222 22455666666666666666777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777777666666665553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.70 E-value=16 Score=36.77 Aligned_cols=164 Identities=10% Similarity=0.087 Sum_probs=93.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
.+|.-..+..++++-++.-++.++. .||-.+.-+++ +--......++++++++.++.|- .. +.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hchhh
Confidence 4555556778888888888887764 35443322222 22234557889999998877642 00 11110
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHcCCCHHHHHHH
Q 042609 282 KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCRMKDVHGAKTL 360 (540)
Q Consensus 282 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~ 360 (540)
..+..-..++....++..+-...- .-+..++.+.|+.++|.+++++|.+.... -.......|+.++...+.+.++..+
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~K-rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAK-RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhcccchhhhhhccccchhhhhH-HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 001101111111222211111111 23444555569999999999999865432 2344577899999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHH
Q 042609 361 LSKMISEGPPP-GNAVFNSVI 380 (540)
Q Consensus 361 ~~~m~~~g~~p-~~~~~~~li 380 (540)
+.+-.+...+. -...|+..+
T Consensus 318 L~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHhccccCCchHHHHHHHHH
Confidence 99976543322 334566544
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.63 E-value=7.2 Score=41.51 Aligned_cols=251 Identities=13% Similarity=0.138 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII----SWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
.+...-|..+.+...++.|..+-+. .+. |..+...+. +-+.+.|++++|...|-+....- .|. .+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HH
Confidence 3456667788888888888776544 333 333433333 44567899999998887654321 222 23
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-PGNAVFNSVISAYSKAG 387 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 387 (540)
|.-+... ....+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.- .| ....+..+-+.+
T Consensus 404 i~kfLda-q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sn 477 (933)
T KOG2114|consen 404 IKKFLDA-QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSN 477 (933)
T ss_pred HHHhcCH-HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhC
Confidence 4444444 6788888888999888865 55667889999999999999887776554 2221 12 345667777888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
-.++|..+-..... +......++ -..+++++|.+.++.+.-...-+....|...+ . ....++-..++-
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili 545 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILI 545 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHH
Confidence 88888777655442 333344443 45788999999987653221111222222211 1 234555555555
Q ss_pred HHHHCCCCCCHHHHHHHHH----HHHHhCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 468 EMKDVGVQPNVDEYNKLIQ----SLCLKALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~~ll~----~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
+.......+........+. -...-.+.++....+++.|.+. .|+.
T Consensus 546 ~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~--s~~s 594 (933)
T KOG2114|consen 546 ELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI--SPDS 594 (933)
T ss_pred HHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc--CCCc
Confidence 5543222222222222221 0001356666666666666664 4544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=16 Score=36.62 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=99.6
Q ss_pred HHHHHHHHhh-----cChhhHHHHHHHHH---HhcccCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHh
Q 042609 162 DALLKAICSS-----VGKKEVYALWDIVK---EIGEKEKGVLTVEILNELIALFSK---------LGKGKAAFEVFNKFG 224 (540)
Q Consensus 162 ~~li~~~~~~-----~~~~~A~~~f~~~~---~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~f~~m~ 224 (540)
..++++.... -..+.|..+|++.. +..+. ....|..+...+.. .....+|.++-++..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 5555555442 23456888898887 43332 24555555444332 223456777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS- 303 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 303 (540)
+.+ +-|......+..+..-.++++.|...|++....+. -...+|........-+|+.++|.+.+++..+.. |...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhH
Confidence 776 67888888888888888889999999999887642 234455555555666899999999998866644 4322
Q ss_pred --HHHHHHHHHHhCCchHHHHHHHHHH
Q 042609 304 --VVAFLISSLCQEDETVKLALDMLDD 328 (540)
Q Consensus 304 --~~~~ll~~~~~~~~~~~~a~~~~~~ 328 (540)
.....+..|+.. ..+.|..+|-+
T Consensus 408 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPN--PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCC--chhhhHHHHhh
Confidence 222334455553 57777777654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.46 E-value=14 Score=41.11 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 405 KPDVYTYTGLMSGYA----NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE 480 (540)
Q Consensus 405 ~p~~~t~~~ll~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 480 (540)
.|+...+..+..+|+ ..+++++|.-+|+..-+. .--+.+|..+|+|.+|+.+..+|... -+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 577777777766665 457788887777664332 23468888899999999988877631 12111
Q ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 481 --YNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 481 --~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
--.|..-+. ..++.-+|-++..+..
T Consensus 1000 ~~a~~L~s~L~-e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1000 ILAEELVSRLV-EQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHH-HcccchhHHHHHHHHh
Confidence 134444433 5666667766666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.44 E-value=6.2 Score=32.58 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=55.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHS--RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
...+.|++++|.+.|+.+...-. +-....--.|+.+|.+.|++++|...+++.++....-...-|...+.|++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34678999999999999988631 22346677889999999999999999999987644333355666666765
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.34 E-value=7.4 Score=34.93 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
..--+..|.+.-++.-|....+++ ++|-. + .+.|--|.+..+..--.++.+-....++.-+..-..+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KI----iEPIQ-S-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKI----IEPIQ-S-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhh----hhhHH-h-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 334566676666666666666655 34322 2 222333555555444455555555555655555555544 356
Q ss_pred cCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 421 GGQMEEACEILNEAKKN-H-----------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.|++.+|..-++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|... .+.+.+.
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 78888888887765432 1 1466666666666654 457888888888888888876544 3444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.31 E-value=9.9 Score=33.64 Aligned_cols=123 Identities=20% Similarity=0.162 Sum_probs=57.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGP--PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 424 (540)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+-..+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45556666666666665543211 0122223333333445556666666665555441111244455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+.|...+....... |+ ...+..+...+...|..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555542 22 22333333333344455555555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.17 E-value=16 Score=35.77 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYG---CVANQETYYFTIEALSR---RKIFDWAWSVCEKMIETGSLPDSEKV 270 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g---~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~ 270 (540)
..+--.++-.|....+++..+++.+.|...- +.-+...-....-++-+ .|+.++|++++..++...-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3333345555778888888888888886531 11122222223334445 67888888888876555556777777
Q ss_pred HHHHHHH
Q 042609 271 GKIISWF 277 (540)
Q Consensus 271 ~~li~~~ 277 (540)
..+...|
T Consensus 221 gL~GRIy 227 (374)
T PF13281_consen 221 GLLGRIY 227 (374)
T ss_pred HHHHHHH
Confidence 6666555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.97 E-value=23 Score=37.15 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKD-VGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
..|..|.+--...|.++.|++.--.+.+ ..+-|....|..+.-+.| ....+...-+-|-++.
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac-a~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC-AVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh-hhhhhhhhHHHHHHHH
Confidence 3444555555667888888776555542 235566666665554444 3333333334343433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=19 Score=35.98 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=103.1
Q ss_pred HHHHHHHHcC-----CCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCC
Q 042609 342 SSVIRSLCRM-----KDVHGAKTLLSKMISE-GPPPG-NAVFNSVISAYSK---------AGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 342 ~~li~~~~~~-----g~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~ 405 (540)
..++.+.... ...+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+-.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5555555442 2356788888888722 24444 3344444333322 22345677777777777543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV---DEY 481 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~ 481 (540)
|......+-.+....++.+.|...|++....+ || ..+|......+.-.|+.++|.+.+++..+. .|.. ...
T Consensus 337 -Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~ 411 (458)
T PRK11906 337 -DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVI 411 (458)
T ss_pred -CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHH
Confidence 77787777777788888999999999998874 44 456666666667789999999999996654 3433 233
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 482 NKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 482 ~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
...++.|| .. ..++|++++-+-.
T Consensus 412 ~~~~~~~~-~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 412 KECVDMYV-PN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHc-CC-chhhhHHHHhhcc
Confidence 34455777 55 4789999876543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.67 E-value=12 Score=33.31 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 042609 175 KEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSV 254 (540)
Q Consensus 175 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 254 (540)
.-|+-=|.+...+.++ -+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|--| ++--.|++..|.+=
T Consensus 82 ~LAR~DftQaLai~P~-----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 82 ALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred HHHhhhhhhhhhcCCC-----cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 3455555655555554 56889999999999999999999999998765222211222222 23345788888777
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 255 CEKMIETGS-LPDSEKVGKIISWFCKGGKAKEAHVVY-TLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 255 ~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
+...-+.+. .|=...|--++. ..-+..+|..-+ ++.. ..+..-|.+.|..++-..-..+ .++++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 766655432 232333332222 223445554333 2222 2446677776666654311112 222222221
Q ss_pred cCC------CCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 333 ARK------YAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 333 ~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
... .=..||--+..-+...|+.++|..+|+-.+.
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 110 0023455566666666777777777666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.55 Score=28.32 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777743
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.1 Score=28.54 Aligned_cols=41 Identities=17% Similarity=0.000 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIA 205 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~ 205 (540)
.+..+...+...|++++|.++|+.+.+..++ |...|..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-----~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-----DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----CHHHHHHhhh
Confidence 4556777889999999999999999998887 8888877653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=15 Score=33.67 Aligned_cols=53 Identities=21% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|-..|..++|.+.-.-+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345555555555555555554 11111 233334445555555555554444333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.13 E-value=8.9 Score=31.09 Aligned_cols=139 Identities=11% Similarity=0.150 Sum_probs=72.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
.-.|.+++..++..+..... +..-+|++|-..... -+-+- +++-+..-|.-.|.. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDa-a~C~y---vv~~LdsIGkiFDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDA-ADCDY---VVETLDSIGKIFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH---HHH---HHHHHHHHGGGS-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---Cccccceeeeecchh-hchhH---HHHHHHHHhhhcCch----------hhcchHHH
Confidence 34566777777776665432 345556655444332 22333 333333333333433 23333443
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
...+-.+ ..+.......++.+.+.|+-++-.+++.++.+. -.++....-.+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333322 123444556677777888888888888777653 3567777777888888888888888888888877
Q ss_pred CC
Q 042609 438 HS 439 (540)
Q Consensus 438 g~ 439 (540)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 74
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.52 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=24.7
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042609 182 DIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFE 218 (540)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (540)
++..+..+. |..+|+.+...|...|++++|++
T Consensus 3 ~kAie~~P~-----n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAIELNPN-----NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHCCC-----CHHHHHHHHHHHHHCcCHHhhcC
Confidence 444455555 88999999999999999998863
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.02 E-value=11 Score=32.12 Aligned_cols=136 Identities=10% Similarity=0.114 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEK-VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSV-VAF 307 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ 307 (540)
....+|...++ +++.+..++|+.-|..+.+.|...-.+. .--+.......|+...|...|+++-.....|-..- ...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555554 3456677788888888887765432221 11223345667777788888877766554443321 111
Q ss_pred HHHHH-HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 308 LISSL-CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 308 ll~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
+=.+| ...+|.++......+-+...+...-...-..|.-+-.+.|++.+|...|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 11111 112355555555444444333222222223333344455555555555555543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.69 E-value=18 Score=33.85 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=23.8
Q ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChh
Q 042609 336 YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE-GPPPGNAVFNSVISAYSKAGDMT 390 (540)
Q Consensus 336 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 390 (540)
++..+...+|..++..+++.+-.++|+..... +..-|...|..+|....+.|+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 33334444444444444444444444444322 23334444444444444444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.61 E-value=19 Score=34.03 Aligned_cols=160 Identities=17% Similarity=0.073 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVH---GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 341 ~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
+..++.+|...+..+ +|..+++.+...... ....+-.-+..+.+.++.+.+.+++..|...- .-....+..++..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHH
Confidence 556666676666544 455555556433222 23344444666666788888888888888762 1133445555554
Q ss_pred H---HhcCCHHHHHHHHHHHHHCCCCCCHH-HH-HHHHHH---HHhcC------CHHHHHHHHHHHH-HCCCCCCHHHH-
Q 042609 418 Y---ANGGQMEEACEILNEAKKNHSRLSPV-TY-HTLIRG---YCKLE------EFDCALKLLNEMK-DVGVQPNVDEY- 481 (540)
Q Consensus 418 ~---~~~g~~~~A~~~~~~m~~~g~~p~~~-~~-~~li~~---~~~~g------~~~~A~~~~~~m~-~~g~~p~~~~~- 481 (540)
+ ... ....|...+..+....+.|... .. ..++.. ..+.+ +++...+++.... ..+.+.+..+-
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4 333 3345666666666555555443 11 111111 11211 1444444555333 12233343332
Q ss_pred -------HHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 482 -------NKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 482 -------~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+..-.. .+.++|++|.+.|+--
T Consensus 244 a~~~LLW~~~~~~--~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKH--YKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHH--HhhcCHHHHHHHHHHH
Confidence 222222 2678999999998754
|
It is also involved in sporulation []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.57 E-value=25 Score=35.48 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
.|-...-+++..+..+.+.+-...+-.+|...| -+...|..++..|... .-+.-..+++++++..+ -|.+.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 366778889999999999999999999999976 7888999999999998 55667799999988765 4555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh-ccCCCCcccHHHHHHHH
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMY-----PPQSVVAFLISSLCQEDETVKLALDMLDDFSG-EARKYAIKPFSSVIRSL 348 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~ 348 (540)
..|-+ ++.+.+...|..+..+-+. .-...|.-++.-. +.+.+..+.+...+.. .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i---~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI---GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc---cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 66665 8889999999887765322 1123555555422 2567777777766654 23344455566677788
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAY 383 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 383 (540)
....++++|.+++..+.+.. ..|...-..+|..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88999999999999887763 34555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.83 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+|..|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777776643
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.49 E-value=33 Score=36.67 Aligned_cols=322 Identities=16% Similarity=0.109 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCC--HHHHHHHHHHHH-hCCChhHHHHHHHHHHHCCCCCCHH---
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFG-DYGCVAN--QETYYFTIEALS-RRKIFDWAWSVCEKMIETGSLPDSE--- 268 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~g~~p~--~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~--- 268 (540)
++.-|..||. .|++.++-+. +..++|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 5677888876 4566666665 4444443 334555555555 6678999999988775543222221
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc---CCCCcc
Q 042609 269 --KVGKIISWFCKGGKAKEAHVVYTLAREKKMY----PPQSVVAFLISSLCQEDETVKLALDMLDDFSGEA---RKYAIK 339 (540)
Q Consensus 269 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~ 339 (540)
....++..|.+.+... |.+..++..+.--. +....+..+-..+....++...|.+.++...... ..+...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2335667777777766 88888776543211 2222222231222222268888888888776543 233344
Q ss_pred cHHHHHHHHH--cCCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHH-----
Q 042609 340 PFSSVIRSLC--RMKDVHGAKTLLSKMISEG---------PPPGNAVFNSVISAYS--KAGDMTPAMEMLKLMRS----- 401 (540)
Q Consensus 340 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~----- 401 (540)
.+..++.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4455555544 3455667777777664321 1335667777766555 45666666655544421
Q ss_pred --CC-C---C-------------------CCHHH---------HHHHHHH--HHhcCCHHHHHHHHH-------HHH-HC
Q 042609 402 --RG-L---K-------------------PDVYT---------YTGLMSG--YANGGQMEEACEILN-------EAK-KN 437 (540)
Q Consensus 402 --~g-~---~-------------------p~~~t---------~~~ll~~--~~~~g~~~~A~~~~~-------~m~-~~ 437 (540)
.. . . +..+. ..-++.+ ++..+..++|.++++ +.. ..
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 10 0 0 11111 1122222 233444445554444 444 11
Q ss_pred CCCCC--------HHHHHHHHH---------HHHhcCCHHHHHHHHHHHHHCCC-C-----CCHHHHHH-HHHHHHHhCC
Q 042609 438 HSRLS--------PVTYHTLIR---------GYCKLEEFDCALKLLNEMKDVGV-Q-----PNVDEYNK-LIQSLCLKAL 493 (540)
Q Consensus 438 g~~p~--------~~~~~~li~---------~~~~~g~~~~A~~~~~~m~~~g~-~-----p~~~~~~~-ll~~~~~~~g 493 (540)
...+. ...|...+. ..+-.|++..|.+....|.+..- . .....+.. +...|+...|
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g 418 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTG 418 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcC
Confidence 11111 122222222 22357889999999999884311 1 12223333 3333455679
Q ss_pred CHHHHHHHHH--------HHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 494 DWRTAEKLLE--------DMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 494 ~~~~A~~l~~--------~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
+.+.|...|. .....+...+...++.++.+-=+.
T Consensus 419 ~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 419 DLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred CHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 9999999997 666777777777777666554444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.26 E-value=4.8 Score=37.65 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 334 RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG---PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
......+...++..-....+++++...+-++.... ..++...+ +.++.+ -.-+.++++.++..=++.|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34445556666766667788999998888876431 12222222 223333 33467799999988899999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNH 438 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g 438 (540)
++.+|..+.+.+++.+|.++.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.25 E-value=15 Score=32.44 Aligned_cols=190 Identities=19% Similarity=0.142 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHhHhc-cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHH
Q 042609 317 ETVKLALDMLDDFSGE-ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS-AYSKAGDMTPAME 394 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~ 394 (540)
+....+...+...... ........+......+...++...+...+.........+ ......... .+...|+++.|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 151 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALE 151 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444443321 112223334455555556666778888888776643332 122222233 7889999999999
Q ss_pred HHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 395 MLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 395 ~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.+...... ......+......+...++.+.+...+....+.........+..+...+...++++.|...+......
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 9999865321 12344555555557788999999999999988742114678888889999999999999999999865
Q ss_pred CCCCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 473 GVQPN-VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 473 g~~p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.|+ ...+..+...+. ..|.++.+...+.+..+...
T Consensus 232 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 232 --DPDNAEALYNLALLLL-ELGRYEEALEALEKALELDP 267 (291)
T ss_pred --CcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 333 445555555565 67788999998888876543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.18 E-value=25 Score=34.90 Aligned_cols=130 Identities=10% Similarity=0.125 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhcc-CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEA-RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF-NSVI 380 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li 380 (540)
..|...|....+. .-.+.|..+|-+..+.+ ..+++..++++|..++. |+..-|..+|+.-... + ||...| +-.+
T Consensus 398 ~v~C~~~N~v~r~-~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRK-RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHH
Confidence 3444455554444 34566666666666655 45556666666665543 4455566666554332 1 222222 3344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
.-+...++-+.|..+|+....+ +.-+ ...|..+|.-=..-|++..+..+-++|.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4555566666666666644333 1112 345666666556666666666665555553
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.14 E-value=19 Score=33.59 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCC
Q 042609 368 GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR-GLKPDVYTYTGLMSGYANGGQMEEACEILNE-----AKKNHSRL 441 (540)
Q Consensus 368 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-----m~~~g~~p 441 (540)
|-.++..+...+|+.++..+++.+-.++++..... +..-|...|..+|......|+..-...+..+ +++.++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 34566677788888899999999888888876655 5556888899999999999988777766654 34556667
Q ss_pred CHHHHHHHHHHHHhc
Q 042609 442 SPVTYHTLIRGYCKL 456 (540)
Q Consensus 442 ~~~~~~~li~~~~~~ 456 (540)
+...-.+|-+.+.+.
T Consensus 277 ~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 277 TDELRSQLSELFKKV 291 (292)
T ss_pred CHHHHHHHHHHHHhc
Confidence 776666665555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.04 E-value=12 Score=31.16 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=39.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG 227 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g 227 (540)
...+.+++..+++.|.-+.++. +...++-.. .+...|++++|+++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~---~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNL---KELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCc---cccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 4678888999999988877652 233444443 4678999999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.30 E-value=37 Score=35.74 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHH
Q 042609 175 KEVYALWDIVKEIGEKEKGVLTVEILNELIAL-----FSKLGKGKAAFEVFNKFGD-------YGCVANQETYYFTIEAL 242 (540)
Q Consensus 175 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~f~~m~~-------~g~~p~~~t~~~ll~~~ 242 (540)
..|.+.++.....+ +...-..+... +....+.+.|+..|+.+.+ .| +.....-+-.+|
T Consensus 229 ~~a~~~~~~~a~~g-------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG-------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hHHHHHHHHHHhhc-------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 35677777666654 23333332222 3456678888888888765 33 222444455555
Q ss_pred HhCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 042609 243 SRRK-----IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK-GGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 243 ~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~ 297 (540)
.+.. +.+.|..++.+.-+.|. |+....-..+..... ..+...|.++|...-..|
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 5432 44556666666666653 444333332222222 234556666666655555
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.13 E-value=38 Score=35.67 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHH
Q 042609 353 DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK-AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA--NGGQMEEACE 429 (540)
Q Consensus 353 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~A~~ 429 (540)
+.+.|..++.+..+.|. |+....-..+..... ..+...|.++|...-+.|.. ...-+.+++.... ...+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 44456666665555542 233322222221111 13345666666666555532 2222222222111 2235556666
Q ss_pred HHHHHHHCC
Q 042609 430 ILNEAKKNH 438 (540)
Q Consensus 430 ~~~~m~~~g 438 (540)
++++.-+.|
T Consensus 386 ~~k~aA~~g 394 (552)
T KOG1550|consen 386 YYKKAAEKG 394 (552)
T ss_pred HHHHHHHcc
Confidence 666665555
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.01 E-value=23 Score=33.12 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=68.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
....|++.+|..+|......... +...--.++.+|...|+.+.|..++..+...--.........=|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34566777777777776654222 34455566777777777777777777765441111111212223334444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
..+-.+.-.. +-|...-..+...|...|+.++|.+.+-.+.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444443 2255666667777777788887777766665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.96 E-value=24 Score=33.26 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=10.5
Q ss_pred HHhcCCHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEM 469 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m 469 (540)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34566777777766643
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.61 E-value=7.3 Score=33.84 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
..+..+...|.+.|+.++|++.|.++.+....+. ...+-.+|+.+.-.+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5788899999999999999999999988654443 445777888888889998888887776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.96 E-value=33 Score=33.72 Aligned_cols=176 Identities=11% Similarity=0.019 Sum_probs=84.9
Q ss_pred CCHHHHHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042609 230 ANQETYYFTI-EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS--WFCKGGKAKEAHVVYTLAREKKMYPPQSVVA 306 (540)
Q Consensus 230 p~~~t~~~ll-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 306 (540)
|.-.+|-.+- .++.-.+++++|.++--..++..- .+ .+..+++ ++--.++.+.|...|++.+..+ |+.....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 3334444442 344566777877777766666421 11 2222332 2334567777777777766654 4433221
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE---GPPPGNAVFNSVISAY 383 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~ 383 (540)
.+ -...+.++.+...| +-..+.|++..|.+.+.+.+.. +..++...|.....+.
T Consensus 241 ~~-----------~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 241 SA-----------SMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred hH-----------hhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 11 11111111112111 2234566666666666665542 2234444455555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHH-H--HHHHHhcCCHHHHHHHHHHHHHC
Q 042609 384 SKAGDMTPAMEMLKLMRSRGLKPDVYTYTG-L--MSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-l--l~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
.+.|+.++|+.--++...- |..-.-. + ..++...+++++|.+-++...+.
T Consensus 298 ~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666655555433 2221111 1 22333455666666666655544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.46 E-value=19 Score=30.45 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=8.8
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 042609 384 SKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~ 402 (540)
.+.|++.+|..+|+++.+.
T Consensus 55 i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHhCCHHHHHHHHHHHhcc
Confidence 3444444444444444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=86.26 E-value=38 Score=33.76 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 042609 424 MEEACEILNEAKKNHSRLS----PVTYHTLIRG--YCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRT 497 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 497 (540)
+.+-..+-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|+..+|.-+=-++. ...++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~-e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLM-ENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHH-HHhhHHH
Confidence 3333444444455665543 2344555443 4467888877655444443 5788888876655554 5668999
Q ss_pred HHHHHHHHH
Q 042609 498 AEKLLEDMR 506 (540)
Q Consensus 498 A~~l~~~m~ 506 (540)
|..++.++.
T Consensus 514 A~~~l~~LP 522 (549)
T PF07079_consen 514 AWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC
Confidence 999888763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.97 E-value=28 Score=31.92 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=37.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 379 VISAYSKAGDMTPAMEMLKLMRSRGLKP---DVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
+.+-|.+.|.+..|..-+++|.+. ..- ....+-.+..+|...|-.++|...-+-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345677777777777777777776 211 1234455666777777777777766666554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.95 E-value=37 Score=36.22 Aligned_cols=220 Identities=15% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHHCCCCCCHHH--
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI-------FDWAWSVCEKMIETGSLPDSEK-- 269 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~~-- 269 (540)
+| .+|-.|.++|++++|.++.++.... .......|...+..+....+ -+....-|++..+.....|+.-
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 44 5666788999999999999666543 35566677888888876532 3355566666665543224432
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc----------hHHHHHHHHHHhHhccCCCCc
Q 042609 270 -VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE----------TVKLALDMLDDFSGEARKYAI 338 (540)
Q Consensus 270 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~~a~~~~~~m~~~~~~~~~ 338 (540)
|..+ ++|.-...-. ..+..+..-|-++=-.+++... .++...+.+.+.-+....+ .
T Consensus 192 vY~il----g~cD~~~~~~--------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~ 258 (613)
T PF04097_consen 192 VYKIL----GRCDLSRRHL--------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-G 258 (613)
T ss_dssp HHHHH----HT--CCC-S---------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHHH----hcCCccccch--------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-c
Confidence 2222 2222111000 0111222222222222222111 1222333333333332332 1
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 042609 339 KPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-LKPDVYTYTGLMSG 417 (540)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~ 417 (540)
.........+.-.|+++.|.+.+-+. .+...+.+++.+.+.-|+-.+-.+... ..+.... -.|...-+..||..
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 11223455666789999999888772 223456666665555443322222211 2222211 01122567888888
Q ss_pred HHh---cCCHHHHHHHHHHHHHCC
Q 042609 418 YAN---GGQMEEACEILNEAKKNH 438 (540)
Q Consensus 418 ~~~---~g~~~~A~~~~~~m~~~g 438 (540)
|.+ ..+..+|.+.+-.+....
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHHhccCHHHHHHHHHHHHHcC
Confidence 876 457788888887776653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.76 E-value=5.7 Score=30.12 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 042609 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 215 ~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 259 (540)
++.+-++.+...++.|+.......+++|-+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555666666677777777777777777777777777777665
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.39 E-value=4.9 Score=30.77 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 215 ~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
+..+-++.+...++.|++......+++|-+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666667777777777777777777777777777766543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=84.35 E-value=47 Score=33.16 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=79.9
Q ss_pred cCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhc---CChhHHHHHHHHHHHCCCCCCHHH----HHHHHHH
Q 042609 350 RMKD-VHGAKTLLSKMISEGPPPGNAVFNSVI----SAYSKA---GDMTPAMEMLKLMRSRGLKPDVYT----YTGLMSG 417 (540)
Q Consensus 350 ~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~ 417 (540)
+.|. -++|.++++.+.+. -+-|...-|.+. .+|.++ ..+..-..+-+-+.+.|+.|-.+. -|.|-.+
T Consensus 391 ~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 4444 67788888887763 122433333322 233322 234444444555566788765443 3333332
Q ss_pred --HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 418 --YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNK 483 (540)
Q Consensus 418 --~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 483 (540)
+..+|++.++.-.-.-+.+ +.|++.+|..+.-......++++|..++..+ +|+..++++
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3467888888766555555 4799999999999999999999999999875 577777664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.18 E-value=36 Score=31.67 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKL----MRSRGLKPDVYTYTGLM-SGYANGGQMEEACEILNEAKK----NHSRLSPVTYH 447 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~ 447 (540)
.-+|..+.+.|++.+|+.+... +++-.-+|+..+...+= .+|-...++.++..-+..... .-|+|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4577788888888888877544 34444455555444332 234444455544444433322 12445444444
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHH
Q 042609 448 TLIRGY--CKLEEFDCALKLLNEMK 470 (540)
Q Consensus 448 ~li~~~--~~~g~~~~A~~~~~~m~ 470 (540)
-|+.+- |...++.-|..+|-+..
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHH
Confidence 444442 33345556666655554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.96 E-value=2.8 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777777888888888888888877664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.75 E-value=41 Score=31.97 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHH----
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKK----NHSRLSPVTYHTLIRG-YCKLEEFDCALKLLNEMKDVGVQPNVD---- 479 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 479 (540)
..+.....-||+.|+.+.|.+.+.+..+ .|.+.|...+.+=+.. |....-+.+-++..+.+.+.|-..+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3444555567777777777766655443 3555665554433322 333333444555555555555444332
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C--CCCcHHHHHHHHHHHHHHHhh
Q 042609 480 EYNKLIQSLCLKALDWRTAEKLLEDMRLK----G--LHLNGITRALIRAVKELEEDA 530 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A~~l~~~m~~~----g--~~p~~~t~~ll~a~~~l~~~~ 530 (540)
+|-.+ ||..-.++.+|-.+|-+.... . --++.++|.++-++-.+++..
T Consensus 185 vY~Gl---y~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~d 238 (393)
T KOG0687|consen 185 VYQGL---YCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVD 238 (393)
T ss_pred HHHHH---HHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccch
Confidence 23322 233344567776666555422 0 113445555555555554433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.13 E-value=28 Score=29.74 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 218 EVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 218 ~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+..+.+.+.|++|+...|..+++.+.+.|++... ..++..++-+|.......+-.+.. ....+.++=-.|..+=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 4445555566777777777777777777765543 333444554554444333322211 1222222222222110
Q ss_pred CCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 298 MYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
...+..++..+... |++-+|+.+.+..... +......++.+-.+.++...=..+|+-..+
T Consensus 89 ----~~~~~~iievLL~~-g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSK-GQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhHHHHHHHHHhC-CCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01233344444444 7777777776654221 233345566666666665554444444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.97 E-value=39 Score=31.15 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhCCchHHHHHHHHHHhHhcc--
Q 042609 262 GSLPDSEKVGKIISWF-CKGGKAKEAHVVYTLAREKKMYPPQSVVA-----FLISSLCQEDETVKLALDMLDDFSGEA-- 333 (540)
Q Consensus 262 g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~~~~~~~a~~~~~~m~~~~-- 333 (540)
+-+||+..-|..-..- .+..+.++|..-|++..+.. +...-|. -+|...++. +++++..+.|.+|...-
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l-~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRL-GNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHH
Confidence 4456655444322111 22335666666666666533 2222222 244444554 55666666555554210
Q ss_pred ---CCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 334 ---RKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 334 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
...+..+.|++++......+.+--..+++
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYe 129 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYE 129 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 11123334555555444444444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.95 E-value=3 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777777654
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=82.79 E-value=44 Score=35.31 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH--
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPNVD-- 479 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-- 479 (540)
.+.....-++..|.+.|-.+.|..+.+.+-..-. ...-|..-+.-+.++|+...+..+-+.+.+. |...+..
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 3555666677777777777777777766554321 2334555566666777766655555544422 2111111
Q ss_pred -----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 042609 480 -----------------EYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRAL 519 (540)
Q Consensus 480 -----------------~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~l 519 (540)
+|.-+... .+.|++.+|.+.+-.+.+.++.|...-..|
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~--~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~L 535 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYEL--YDEGDFREAASLLVSLLKSPIAPKSFWPLL 535 (566)
T ss_dssp ---------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHCCCCCcHHHHHHH
Confidence 11222211 245788888888888888888887665533
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.72 E-value=42 Score=31.39 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
++.....|..+|.+.+|.++.+....-+ +.+...|-.|+..++..|+--.|..-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556666777777776666665542 2355666666667776666555555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.49 E-value=60 Score=32.98 Aligned_cols=177 Identities=10% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 302 QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 302 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
.....+++.-+..+ ..+.-.+.+-.+|...|- +...|..++..|... ..++-..+|+++.+..+. |++.-..|..
T Consensus 66 d~~l~~~~~~f~~n-~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 66 DSCLVTLLTIFGDN-HKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred chHHHHHHHHhccc-hHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33444455554444 455555666666665442 345566777777766 556667777777665433 3444444444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKP--D---VYTYTGLMSGYANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p--~---~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 455 (540)
-|-+ ++.+.+..+|.+...+-+.- + ...|.-|+.. -..+.+....+...+.+. |..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 66677777776665542210 0 1133333331 134555555555555542 333344555666666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
..++++|++++..+.+.+ ..|...-..++..
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 777777777777766553 2244444455544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.47 E-value=35 Score=35.24 Aligned_cols=28 Identities=18% Similarity=-0.044 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
..-|..|.++..+.|++..|.+.|.+..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3445555555555555555555554433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.07 E-value=2 Score=25.55 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 042609 442 SPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~ 463 (540)
|...|+.+...|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666666666666666654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.85 E-value=3.9 Score=25.10 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777777655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.47 E-value=33 Score=29.39 Aligned_cols=122 Identities=10% Similarity=0.117 Sum_probs=53.1
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH--HHhcCCH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNA-VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY-TYTGLMSG--YANGGQM 424 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~~ 424 (540)
++.++.++|+.-|..+.+.|...-.. .--.+.......|+...|...|+++-.....|-.. -.-.|=.+ +..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555566666666665554331111 11112223445556666666666655443333222 11111111 2344555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
++...-.+-+...+-+.-...-..|--+-.+.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5544444444433322222333344444445555555555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.10 E-value=17 Score=27.97 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+..+-++.+....+.|++....+.+++|-+.+++.-|.++|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.54 E-value=23 Score=26.96 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
+.-++.+-++.+......|+.....+.+++|.+.+++..|.++|+-++.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44455555666666667777777777777777777777777777766632 1123345555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.05 E-value=4.8 Score=23.34 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
..|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777777788888888887777653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=80.01 E-value=49 Score=33.20 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSE--KVGKIISWFCKGGKAKEAHVVYT 291 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~ 291 (540)
.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 344445555554 334444455444322 11223444556666665544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.0 bits (229), Expect = 7e-20
Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 3/182 (1%)
Query: 350 RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY 409
R+ A L P ++ + L
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 410 TYTGLMSGYANGGQMEEACEILN---EAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLL 466
Q+ A +L ++ L+ Y+ ++ G+ + F + +L
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 467 NEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKEL 526
+KD G+ P++ Y +Q + + D T E+ LE M +GL L + A++ + ++
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 527 EE 528
Sbjct: 249 AT 250
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 4e-15
Identities = 29/202 (14%), Positives = 66/202 (32%), Gaps = 6/202 (2%)
Query: 341 FSSVIRSLCRMKDVHGAKTLL---SKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397
+ + + A LL + ++N+V+ +++ G + +L
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 398 LMRSRGLKPDVYTYTGLMSGYANGGQMEEACE-ILNEAKKNHSRLSPVTYHTLIRGYCKL 456
+++ GL PD+ +Y + Q E L + + +L + L+ +
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 457 EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGIT 516
K+ P +KL++ + K + L L+ L +
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309
Query: 517 R--ALIRAVKELEEDAIENGEA 536
A V +E+ + + E
Sbjct: 310 MELASRVCVVSVEKPTLPSKEV 331
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 61/384 (15%), Positives = 121/384 (31%), Gaps = 102/384 (26%)
Query: 184 VKEIGEKEKGVLTVEILNELIA----------LFSKL-GKGKAAFEVFNKFGDYGCVANQ 232
K++ + K +L+ E ++ +I LF L K + + F + +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEE----VLR 88
Query: 233 ETYYFTIEALS--------RRKIF----DWAWSVCEKMIETGSLPDSEKVGKIISWFCK- 279
Y F + + +++ D ++ + + ++ + K+ +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLEL 147
Query: 280 -----------GGKAKE---AHVVYTLAREKKMYPPQSVVAFLIS-SLCQEDETVKLALD 324
G K V + + KM + F ++ C ETV L+
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--DFKI--FWLNLKNCNSPETV---LE 200
Query: 325 MLDDFSGEARKYAIKP-FSSVIRSLCRMK-DVHGAKTLLSKMISEGPPPGNA------VF 376
ML Y I P ++S +K +H + L +++ P N V
Sbjct: 201 MLQKLL-----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNVQ 254
Query: 377 NS-VISAY---SKAGDMTPAMEMLKLMRSRG----LKPDVYTYTGLMSGYANGGQMEEAC 428
N+ +A+ K +L R + L T+ L ++ +E
Sbjct: 255 NAKAWNAFNLSCK---------ILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVK 304
Query: 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV-------QPNVDEY 481
+L K R L R L ++ E G+ N D+
Sbjct: 305 SLL--LKYLDCRPQ-----DLPREVLTTNPR--RLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 482 NKLIQSLCLKALDWRTAEKLLEDM 505
+I+S L L+ K+ + +
Sbjct: 356 TTIIES-SLNVLEPAEYRKMFDRL 378
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 69/582 (11%), Positives = 152/582 (26%), Gaps = 231/582 (39%)
Query: 12 VARNFGVATE---KVH-------CSQTLSLNISRSLSKPSLYRSSRFLSESPAANPKDES 61
V ++ V + K+ S L + + L LY+ + + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKL 225
Query: 62 SFSPETDFSSRSFGENEYAQMDPSA----DAVESKEE-EAYEID-------GDKLENVLS 109
R Y + V++ + A+ + K V
Sbjct: 226 RIHSIQAELRRLLKSKPY----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTD 279
Query: 110 LLQSSVDGY--LESSLDSFELDLHEDFVLKVLET-------------PLVLGENLVCFFK 154
L ++ + L+ + D + +LK L+ P L
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--------- 330
Query: 155 WVTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGK 214
++ + ++ A WD K + + L +I +
Sbjct: 331 ----SIIAESI---------RDGLATWDNWKHVNCDK--------LTTII---------E 360
Query: 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274
++ V A + + LS +F P S +
Sbjct: 361 SSLNVLEP-------AEYRKMF---DRLS---VF----------------PPSAHI---- 387
Query: 275 SWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLIS-SLCQED---ETVKLALDMLDDFS 330
++ + + VV L SL ++ T+ + + +
Sbjct: 388 ----------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELK 436
Query: 331 GEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKA---- 386
+ +H S++ Y+
Sbjct: 437 VKLEN---------------EYALH---------------------RSIVDHYNIPKTFD 460
Query: 387 -GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGY--ANGGQMEEACEI----LN----EAK 435
D+ P D Y Y+ + G+ N E L+ E K
Sbjct: 461 SDDLIPPYL------------DQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 436 KNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-----VQPNVDEYNKLIQSLCL 490
H + ++ + +LN ++ + + N +Y +L+ ++
Sbjct: 507 IRHDSTA----------------WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-- 548
Query: 491 KALDW--RTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDA 530
LD+ + E L+ + + + AL+ + + E+A
Sbjct: 549 --LDFLPKIEENLICSK-----YTDLLRIALMAEDEAIFEEA 583
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.57 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.03 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.03 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.83 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.69 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.66 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.6 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.6 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.58 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.57 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.48 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.46 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.38 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.38 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.31 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.31 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.25 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.24 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.23 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.22 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.22 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.14 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.13 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.12 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.11 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.11 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.09 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.07 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.07 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.03 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.02 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.01 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.99 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.99 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.98 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.86 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.85 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.83 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.8 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.78 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.73 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.71 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.68 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.65 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.64 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.63 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.54 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.52 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.44 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.34 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.19 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.1 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.09 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.05 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.99 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.52 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.06 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.82 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.67 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.41 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.8 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.72 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.45 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.02 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.23 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.96 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.82 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.62 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.89 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.67 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.55 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.16 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.06 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.04 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.67 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.52 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 82.55 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.93 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.88 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.55 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.25 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=276.72 Aligned_cols=176 Identities=17% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHCCCCCCHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD---------MTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455555555555555555555555555555555555555544332 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK 491 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 491 (540)
++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+ +
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~-~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM-D 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-h
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555554 4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 492 ALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 492 ~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
.|++++|.+++++|.+.|..|+..|+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 45555555555555555555555555
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=273.92 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 042609 250 WAWSVCEKMIETGSLPDS-EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDD 328 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 328 (540)
.+..+.+.+.+.+..... .+++.+|++|++.|++++|.++|++|.+.|+.|+..+|+++|.+++.. +...+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-~~~~~------- 79 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-EAATE------- 79 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-CCCSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-Cchhh-------
Confidence 345555666666554433 346667777777777777777777777777777777777777766554 21100
Q ss_pred hHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042609 329 FSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV 408 (540)
Q Consensus 329 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 408 (540)
..+.+.+++|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 80 -------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 80 -------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp -------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred -------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 0123345677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSL 488 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 488 (540)
.||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred H
Q 042609 489 C 489 (540)
Q Consensus 489 ~ 489 (540)
+
T Consensus 221 ~ 221 (501)
T 4g26_A 221 K 221 (501)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=259.86 Aligned_cols=356 Identities=12% Similarity=0.033 Sum_probs=292.9
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hC--------
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFG-DY-------- 226 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~-------- 226 (540)
++...+..++..+.+.|++++|..+|+.+.... ++..+|+.++.+|.+.|++++|+++|+++. ..
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc------cchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccc
Confidence 455677778888888888888888888765431 478889999999999999999999888532 22
Q ss_pred ------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH----------------------------
Q 042609 227 ------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK---------------------------- 272 (540)
Q Consensus 227 ------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------------------- 272 (540)
|.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 3345678888899999999999999999998887642 23333322
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 273 ----------IISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 273 ----------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
++.+|.+.|++++|.++|+++.+. .++..+|+.++..+++. |++++|+++|+++.+.+.. +..++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~ 343 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR-SRFIDVLAITTKILEIDPY-NLDVYP 343 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CCTTHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcCcc-cHHHHH
Confidence 255566788888898888887764 47788999999999998 9999999999999876533 778899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG 422 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 422 (540)
.++.+|.+.|++++|..+++++.+. .+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999865 35578899999999999999999999999998753 236889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..+|+.+...|+ +.|++++|.++|
T Consensus 422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 498 (597)
T 2xpi_A 422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF-NKSDMQTAINHF 498 (597)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 9999999999999875 4578999999999999999999999999999754 347889999999988 899999999999
Q ss_pred HHHHHC----CCCCc--HHHH-HHHHHHHHHH
Q 042609 503 EDMRLK----GLHLN--GITR-ALIRAVKELE 527 (540)
Q Consensus 503 ~~m~~~----g~~p~--~~t~-~ll~a~~~l~ 527 (540)
++|.+. +..|+ ..++ .+..++...+
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999877 77887 4555 6666665544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=262.30 Aligned_cols=360 Identities=11% Similarity=-0.006 Sum_probs=282.6
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhc-----------ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIG-----------EKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~-----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
+...+..++..+++.|++++|.++|+++.... ...+...++.+|+.++.+|.+.|++++|+++|++|.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45578889999999999999999998421111 0000123589999999999999999999999999987
Q ss_pred CCCCCCHHHHHHH--------------------------------------HHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 042609 226 YGCVANQETYYFT--------------------------------------IEALSRRKIFDWAWSVCEKMIETGSLPDS 267 (540)
Q Consensus 226 ~g~~p~~~t~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 267 (540)
.+ +.+...+..+ +..|.+.|++++|.++|+++.+. .++.
T Consensus 229 ~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 305 (597)
T 2xpi_A 229 VD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS 305 (597)
T ss_dssp HC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred hC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence 65 2233333332 44555678888999999888765 5788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 347 (540)
.+++.++.+|.+.|++++|.++|+++.+.+ ..+..++..++..+... |++++|..+++++.+.. ..+..+|+.++..
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRH-PEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 899999999999999999999999988765 23566777888888877 88999999999887543 3467778888899
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999887753 34677889999999999999999999998887743 3778888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHhCCCHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPN--VDEYNKLIQSLCLKALDWRTAEKL 501 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l 501 (540)
.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|+ +.|++++|.++
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR-KLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999988764 447888999999999999999999999988765 66777 778888888877 78889999999
Q ss_pred HHHHHHCCCCCcHHHH-HHHHHHHHHH
Q 042609 502 LEDMRLKGLHLNGITR-ALIRAVKELE 527 (540)
Q Consensus 502 ~~~m~~~g~~p~~~t~-~ll~a~~~l~ 527 (540)
++++.+.+. .+..++ .+...+...+
T Consensus 539 ~~~~~~~~p-~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 539 LNQGLLLST-NDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHSS-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHhC
Confidence 999887752 244454 5555555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-23 Score=207.05 Aligned_cols=346 Identities=12% Similarity=0.030 Sum_probs=290.0
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+...+...+++++|...++...+..+. +..+|+.+...|.+.|++++|++.|+++.+.. +.+..+|..+..++.
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQNPL-----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 344556779999999999998887664 88999999999999999999999999998764 456778999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
+.|++++|.+.|+++++.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...|..+...+... |++++|.
T Consensus 113 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~ 189 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQ-GEIWLAI 189 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 9999999999999999864 2345677788899999999999999999998865 22356666676676666 9999999
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG 403 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (540)
..|+++...+. .+...|..+...+...|++++|...+++..... +.+..++..+..+|.+.|++++|...|+++.+.+
T Consensus 190 ~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 190 HHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999988643 245678889999999999999999999998753 3367889999999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 404 LKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNK 483 (540)
Q Consensus 404 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 483 (540)
. .+..+|..+...|.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++|...++++.+.. +.+..++..
T Consensus 268 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 344 (388)
T 1w3b_A 268 P-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSN 344 (388)
T ss_dssp S-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 3 257789999999999999999999999999874 5688999999999999999999999999998753 335778888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHHH
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLKGLHLNG--ITRALIRAVKEL 526 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ll~a~~~l 526 (540)
+...|. +.|++++|.+.++++.+. .|+. ..+.+...+.++
T Consensus 345 l~~~~~-~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 345 LASVLQ-QQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 888887 899999999999999875 4442 222554444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-23 Score=204.90 Aligned_cols=344 Identities=11% Similarity=-0.027 Sum_probs=292.1
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+.+.|++++|...++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 3556789999999999999887765 78889999999999999999999999988764 67889999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|++++|...|+++++.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ |+.......+..++...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999998863 3456789999999999999999999999999865 66666555566666656999999999
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (540)
|+++..... .+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+...
T Consensus 158 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 158 YLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 999987642 246779999999999999999999999999864 34677899999999999999999999999887632
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
-+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+++.+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 257899999999999999999999999999875 3467899999999999999999999999999753 45788899888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCc-HHHH-HHHHHHHHH
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGLHLN-GITR-ALIRAVKEL 526 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~-~ll~a~~~l 526 (540)
..+. +.|++++|.++++++.+.. |+ ..++ .+...+...
T Consensus 313 ~~~~-~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 313 NIKR-EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHH-TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTT
T ss_pred HHHH-HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHc
Confidence 8877 8999999999999998753 43 3333 555555433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-20 Score=188.29 Aligned_cols=328 Identities=12% Similarity=0.060 Sum_probs=266.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+.+.|++++|..+|+.+.+..+. +..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 445566778899999999999999987664 89999999999999999999999999998875 557889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-H---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPD-S---EKVGKI------------ISWFCKGGKAKEAHVVYTLAREKKMYPPQSV 304 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 304 (540)
++.+.|++++|.+.|+++.+.. |+ . ..+..+ ...+.+.|++++|...|+++.+.. ..+...
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999999864 44 3 555555 444899999999999999998765 345666
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 042609 305 VAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSV----- 379 (540)
Q Consensus 305 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l----- 379 (540)
+..+...+... |++++|...|+++.... +.+..++..+...|...|++++|...|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 77777777777 99999999999998764 3357789999999999999999999999998753 2344455544
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 380 -------ISAYSKAGDMTPAMEMLKLMRSRGLKPD-----VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYH 447 (540)
Q Consensus 380 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 447 (540)
...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 78899999999999999999875 344 4578889999999999999999999998764 44789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H-----------HHHhCC-----CHHHHHHHHHHH
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ-S-----------LCLKAL-----DWRTAEKLLEDM 505 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~-----------~~~~~g-----~~~~A~~l~~~m 505 (540)
.+..+|...|++++|...|+++.+. .|+.......+. . +....| +.+++.+.++++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999975 455443333332 1 111223 456777777764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-20 Score=187.82 Aligned_cols=302 Identities=14% Similarity=0.077 Sum_probs=256.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 78899999999999999999999999998764 5679999999999999999999999999999875 356888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHH------------HHHhCCchHHHHHHHHHHhHhccCCCCcc
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQ----SVVAFLIS------------SLCQEDETVKLALDMLDDFSGEARKYAIK 339 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 339 (540)
+|.+.|++++|...|+++.+.+ |+. ..+..+.. .+... |++++|+..|+++.... +.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999998855 554 34444422 25555 99999999999998764 33667
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL----- 414 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----- 414 (540)
.+..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+++.+... .+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH
Confidence 79999999999999999999999998763 45788999999999999999999999999987632 244445444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 415 -------MSGYANGGQMEEACEILNEAKKNHSRLS-----PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 415 -------l~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|...++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 788999999999999999999863 44 4578899999999999999999999998652 23678888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.+..++. ..|++++|.+.++++.+..
T Consensus 334 ~l~~~~~-~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 334 DRAEAYL-IEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHhC
Confidence 8888776 8999999999999999853
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-19 Score=184.19 Aligned_cols=341 Identities=11% Similarity=-0.036 Sum_probs=249.5
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---- 231 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---- 231 (540)
++...+..+..++.+.|++++|...|+.+.+..+. +..+|..+...|.+.|++++|+..|+++...+- ++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 110 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-----YSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASI 110 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGT
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchH
Confidence 45556777778888888888888888888877664 778888888888888888888888888866541 11
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q 042609 232 ---------------------------------------------------------------------------QETYY 236 (540)
Q Consensus 232 ---------------------------------------------------------------------------~~t~~ 236 (540)
...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (514)
T 2gw1_A 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHH
Confidence 22233
Q ss_pred HHHHHHHh---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 237 FTIEALSR---RKIFDWAWSVCEKMIE-----TGS--------LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 237 ~ll~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
.....+.. .|++++|..+++++++ ..- +.+..++..+...+...|++++|...|+++.+.+ |
T Consensus 191 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~ 268 (514)
T 2gw1_A 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--P 268 (514)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 33333333 7888888888888877 311 1234567777888888888888888888888765 4
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 380 (540)
+...+..+...+... |++++|...++.+..... .+...+..+...+...|++++|...++++.+... .+...+..+.
T Consensus 269 ~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 345 (514)
T 2gw1_A 269 RVNSYIYMALIMADR-NDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLA 345 (514)
T ss_dssp CHHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHH
Confidence 455555566666665 888888888888776532 2456678888888888888888888888887643 3566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS-RLS----PVTYHTLIRGYCK 455 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~ 455 (540)
..|...|++++|...++++.+... .+...+..+...|...|++++|...++++.+... .++ ...|..+...|..
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 888888888888888888876532 2567788888888888899999888888876421 111 3478888888888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 456 ---LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 456 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.|++++|...++++.+.. +.+...+..+...+. +.|++++|.+.+++..+...
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL-QQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCS
T ss_pred hhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhcc
Confidence 889999999988888653 235566666666665 78889999999988887643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=178.45 Aligned_cols=351 Identities=11% Similarity=0.003 Sum_probs=283.3
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
......+.+.|++++|...|+.+.+.. |+..+|..+...|.+.|++++|+..|+++.+.+ +.+..+|..+..+
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 345557788899999999999998865 488999999999999999999999999998876 7899999999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCC----------------------------------------------------------
Q 042609 242 LSRRKIFDWAWSVCEKMIETGS---------------------------------------------------------- 263 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~---------------------------------------------------------- 263 (540)
+.+.|++++|...|+.+.+.+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999999999877642
Q ss_pred --------------------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCCC--------CHHHHHH
Q 042609 264 --------------------LPDSEKVGKIISWFCK---GGKAKEAHVVYTLARE-----KKMYP--------PQSVVAF 307 (540)
Q Consensus 264 --------------------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ 307 (540)
+.+...+..+...+.. .|++++|..+|+++.+ ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1114555555555554 8999999999999987 31122 1334555
Q ss_pred HHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 308 LISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG 387 (540)
Q Consensus 308 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 387 (540)
+...+... |++++|...|+++...... ...+..+...+...|++++|...++++.... +.+...+..+...|...|
T Consensus 243 ~~~~~~~~-~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLK-NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHS-SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 66666666 9999999999999887544 7778999999999999999999999998763 346778999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
++++|...|+++.+.... +...+..+...|...|++++|..+++++.+.. +.+...|..+...|.+.|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999887433 67789999999999999999999999998864 3467889999999999999999999999
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Q 042609 468 EMKDVGV-QPN----VDEYNKLIQSLCLK---ALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKEL 526 (540)
Q Consensus 468 ~m~~~g~-~p~----~~~~~~ll~~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l 526 (540)
++.+... .++ ...+..+...+. . .|++++|.+.++++.+.........+.+...+..+
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9875321 112 337777777776 7 89999999999999886533222223555544443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-17 Score=160.24 Aligned_cols=320 Identities=14% Similarity=0.073 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 444455555555555555555555554432 2334455555555555555555555555554432 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC---CHH-HHHHH------------HHHHHhCCchHHHHHHHHHHhHhccCCCCcccH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYP---PQS-VVAFL------------ISSLCQEDETVKLALDMLDDFSGEARKYAIKPF 341 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p---~~~-~~~~l------------l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 341 (540)
.+.|++++|...|+++.+.. | +.. .+..+ ...+... |++++|...++++..... .+...+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC-CchHHH
Confidence 55555555555555554432 3 211 11111 2344444 888888888888776542 355668
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH---------
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYT--------- 412 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------- 412 (540)
..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 888888889999999999999888763 446778888888999999999999999888776322 333332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 413 ---GLMSGYANGGQMEEACEILNEAKKNHSRLSP----VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 413 ---~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
.+...+.+.|++++|...++++.+... .+. ..+..+...|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 235568889999999999999888642 233 335567788999999999999999998752 23667777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHH
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEE 528 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~ 528 (540)
..+. +.|++++|.+.|++..+....-......+.++...+.+
T Consensus 314 ~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 314 EAYL-IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 7765 88999999999999987643222222255555555544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-17 Score=169.52 Aligned_cols=338 Identities=12% Similarity=0.049 Sum_probs=248.3
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQET--- 234 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t--- 234 (540)
...+..+...+...|++++|...|+.+.+..+. +..+|..+...|...|++++|+..|+.+... |+...
T Consensus 59 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 130 (537)
T 3fp2_A 59 PVFYSNISACYISTGDLEKVIEFTTKALEIKPD-----HSKALLRRASANESLGNFTDAMFDLSVLSLN---GDFDGASI 130 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CCCChHHH
Confidence 345666777777778888888888888777665 7778888888888888888888888644222 22110
Q ss_pred ------------------------------------------------------------------HHHHHHHHH-----
Q 042609 235 ------------------------------------------------------------------YYFTIEALS----- 243 (540)
Q Consensus 235 ------------------------------------------------------------------~~~ll~~~~----- 243 (540)
...+...+.
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 011111111
Q ss_pred ---hCCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 244 ---RRKIFDWAWSVCEKMIETGSLPD--------SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 244 ---~~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
..+++++|..+++.+++.. |+ ..++..+...+...|++++|...|+.+.+.. |+...+..+...+
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHH
Confidence 1136777888888877653 33 2356677788889999999999999998865 6655666555555
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
... |++++|...|++...... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 287 ~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 287 ADK-ENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp CCS-SCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHh-cCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 555 999999999999887643 356678899999999999999999999998764 33567888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------C
Q 042609 393 MEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH-----SRLSPVTYHTLIRGYCKL----------E 457 (540)
Q Consensus 393 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~----------g 457 (540)
...|+++.+.. +.+...+..+...|...|++++|...++++.+.. .......+..+...|.+. |
T Consensus 364 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99999988774 2356788899999999999999999999987642 112223355556777777 9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 458 EFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
++++|...|+++.+.. +.+...+..+...|. +.|++++|.+.|++..+......
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKL-QMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcH
Confidence 9999999999998653 235677777777776 88999999999999988765443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-16 Score=156.46 Aligned_cols=309 Identities=12% Similarity=0.045 Sum_probs=251.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+.+.+..+. +..+|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 445566778889999999999999987765 78999999999999999999999999998764 457789999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLP----DSEKVGKI------------ISWFCKGGKAKEAHVVYTLAREKKMYPPQSV 304 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 304 (540)
.+...|++++|...++.+.+. .| +...+..+ ...+...|++++|..+|+++.+.. ..+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 999999999999999999886 34 34444444 578999999999999999998865 234556
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH-------
Q 042609 305 VAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN------- 377 (540)
Q Consensus 305 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~------- 377 (540)
+..+...+... |++++|...+++..... +.+...+..+...+...|++++|...|++..+... .+...+.
T Consensus 157 ~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKE-GEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHH
Confidence 66666666666 99999999999998764 33567789999999999999999999999987532 2333333
Q ss_pred -----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 378 -----SVISAYSKAGDMTPAMEMLKLMRSRGLKPDV----YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHT 448 (540)
Q Consensus 378 -----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 448 (540)
.+...+.+.|++++|...++++.+.... +. ..+..+...|...|++++|...+++..+.. +.+..+|..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366789999999999999999886322 22 235557788999999999999999999864 447889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 042609 449 LIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKLI 485 (540)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 485 (540)
+...|.+.|++++|...|+++.+. .|+ ...+..+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 347 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 999999999999999999999976 455 34444433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=189.05 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRS---RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 450 IRGYCKLEEF-DCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 450 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 6666665553 4555666666666666666666655544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=188.61 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=96.2
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMIS---EGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL 414 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 414 (540)
..||+++|++||+.|++++|..+|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45688888888888888888888877653 467888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 415 MSGYANGGQ-MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL 456 (540)
Q Consensus 415 l~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (540)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 888888886 467888888888888888888888888766554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-16 Score=151.92 Aligned_cols=282 Identities=13% Similarity=0.008 Sum_probs=172.6
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.+...|++++|..+|+.+.+..+. +...+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPF-----HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-----CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhh
Confidence 344456666666666665554443 44455555555566666666666666665542 334455555555555555
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 247 -IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 247 -~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
++++|...+++..+.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 105 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------- 155 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---------------------------- 155 (330)
T ss_dssp SCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----------------------------
T ss_pred hhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----------------------------
Confidence 5666666666555543 2234445555555555555555555555544432
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-- 403 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 403 (540)
.. +...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+..
T Consensus 156 --------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 156 --------KG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp --------TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred --------cc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 11 23345556666677777777777777776653 3356677777777777788888877777766531
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 404 ------LKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 404 ------~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
...+..++..+...|...|++++|...++++.+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCc
Confidence 12335677777888888888888888888877754 3356777788888888888888888888877543 224
Q ss_pred HHHHHHHHHHHHHhCCCH
Q 042609 478 VDEYNKLIQSLCLKALDW 495 (540)
Q Consensus 478 ~~~~~~ll~~~~~~~g~~ 495 (540)
...+..+..++....|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 555665655554455553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-16 Score=152.63 Aligned_cols=284 Identities=10% Similarity=-0.020 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44556666666666677777777777766543 3344445555566666666666666666666542 233445555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCH
Q 042609 276 WFCKGG-KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 276 ~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (540)
.+...| ++++|...|+++.+ .. +.+...|..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~------------------------------------~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATT------------------------------------LE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHT------------------------------------TC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHH------------------------------------hC-CccHHHHHHHHHHHHHccCH
Confidence 555555 55555555554433 22 11345577888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
++|...++++.+.. +.+...+..+...|...|++++|...+++..+... .+...+..+...|...|++++|...++++
T Consensus 142 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 142 DQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999998764 33566777899999999999999999999988743 36789999999999999999999999998
Q ss_pred HHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 435 KKNH--------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 435 ~~~g--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.+.. ...+..+|..+...|.+.|++++|...+++..+.. +.+...+..+...+. +.|++++|.+.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHS-LMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH-HHTCHHHHHHHHHTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 8742 13346789999999999999999999999998653 235667777777766 8899999999999998
Q ss_pred HCCCCCcHHHH-HHHHHH
Q 042609 507 LKGLHLNGITR-ALIRAV 523 (540)
Q Consensus 507 ~~g~~p~~~t~-~ll~a~ 523 (540)
+.... +...+ .+..++
T Consensus 298 ~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 298 GLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp TTCSC-CHHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHH
Confidence 75432 23333 444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-17 Score=159.39 Aligned_cols=304 Identities=13% Similarity=0.008 Sum_probs=178.1
Q ss_pred cChhhHHH-HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 172 VGKKEVYA-LWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 172 ~~~~~A~~-~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
+++++|.. .|+...+..+.. ...+...|..+...|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 56666766 665444333221 11134567788888888888999999888888764 5577788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhH
Q 042609 251 AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFS 330 (540)
Q Consensus 251 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 330 (540)
|...++++++.. +.+..++..+...|...|++++|...|+++.... |+.......+ +.....
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~-------- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAGG-------- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhhh--------
Confidence 888888888764 3567788888888888888888888888887754 3222111000 000000
Q ss_pred hccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042609 331 GEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY 409 (540)
Q Consensus 331 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 409 (540)
..+ ...+. .+..+...|++++|...|+++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+..
T Consensus 179 ---~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 179 ---AGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---hcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 000 00011 1122225566666666666665542211 35566666666666666666666666665542 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP----------NVD 479 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~ 479 (540)
+|..+...|...|++++|...++++.+.. +.+...|..+...|.+.|++++|...|+++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 66666666666666666666666666543 2345666666666666666666666666665321110 145
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Q 042609 480 EYNKLIQSLCLKALDWRTAEKLLE 503 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A~~l~~ 503 (540)
.|..+..++. ..|++++|..+++
T Consensus 332 ~~~~l~~~~~-~~g~~~~A~~~~~ 354 (368)
T 1fch_A 332 IWSTLRLALS-MLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHH-HHTCGGGHHHHHT
T ss_pred HHHHHHHHHH-HhCChHhHHHhHH
Confidence 5666665554 5566666666655
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=154.88 Aligned_cols=295 Identities=11% Similarity=-0.012 Sum_probs=201.0
Q ss_pred HHhcCChHHHHH-HHHHHhhCCC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 207 FSKLGKGKAAFE-VFNKFGDYGC---VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 207 ~~~~g~~~~A~~-~f~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
+...|++++|++ .|++.....- ..+...+..+...+.+.|++++|...++++++.. +.+..++..+..+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344588899998 8887654321 1134567788888999999999999999998874 3577888889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 283 AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 283 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
+++|...|+++.+.+ ..+...+..+...+... |++++|...++++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 999999999888765 23445555555555555 7777777777776654322 11111111000 00
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK-PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 363 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
. ..+. ..+. .+..+...|++++|...|+++.+.... ++..++..+...|.+.|++++|...++++.+.. +.
T Consensus 178 -~----~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0001 1111 233334889999999999999876322 158899999999999999999999999998864 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---------
Q 042609 442 SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHL--------- 512 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p--------- 512 (540)
+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|. +.|++++|.+.++++.+.....
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI-NLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 67899999999999999999999999998653 235677877877776 8899999999999998653322
Q ss_pred -cHHHH-HHHHHHHHHHH
Q 042609 513 -NGITR-ALIRAVKELEE 528 (540)
Q Consensus 513 -~~~t~-~ll~a~~~l~~ 528 (540)
...++ .+..++..+++
T Consensus 328 ~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHhCC
Confidence 13344 67777776665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-15 Score=156.33 Aligned_cols=335 Identities=13% Similarity=0.020 Sum_probs=257.0
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...+..+...+.+.|++++|...|+.+.+..+. +..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-----EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHH
Confidence 455677788889999999999999999998876 89999999999999999999999999998865 567889999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHH-------
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK------KMYPPQSV------- 304 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~------- 304 (540)
+..++...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+... ...|+...
T Consensus 99 la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 999999999999999999633 32 2322 222344555566667788888777442 11222222
Q ss_pred ----------------------HHHHHHHHHhC--------CchHHHHHHHHHHhHhccCCCC------cccHHHHHHHH
Q 042609 305 ----------------------VAFLISSLCQE--------DETVKLALDMLDDFSGEARKYA------IKPFSSVIRSL 348 (540)
Q Consensus 305 ----------------------~~~ll~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~ 348 (540)
+...+..+... .|++++|..+|+++........ ..++..+...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 22222222221 1478999999999886542210 22466777888
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
...|++++|...|+++.+. .|+...+..+...|...|++++|...|+++.+... .+..+|..+...|...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999999985 45588899999999999999999999999987643 36788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..++++.+.. +.+...|..+...|...|++++|..+++++.+.. +.+...+..+...+. ..|++++|.+.++++.+.
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT-DRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHc
Confidence 9999999864 3356889999999999999999999999998653 234567777776665 889999999999998765
Q ss_pred C
Q 042609 509 G 509 (540)
Q Consensus 509 g 509 (540)
.
T Consensus 408 ~ 408 (537)
T 3fp2_A 408 E 408 (537)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=154.31 Aligned_cols=277 Identities=11% Similarity=-0.029 Sum_probs=181.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|...|+++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888889999999999999999988764 5678889999999999999999999999988764 346788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
+|...|++++|...|+++.+.. |+.......+ + .....+..+...+.+.|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------~------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------K------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhh-------c------------------cchHHHHHHHHHHhhhhhHH
Confidence 9999999999999998887643 2211100000 0 01223444556666667777
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPP-PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+|..+++++.+.... .+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777776654322 146667777777777777777777777766552 225667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 042609 435 KKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV---Q--------PNVDEYNKLIQSLCLKALDWRTAEKLLE 503 (540)
Q Consensus 435 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~ll~~~~~~~g~~~~A~~l~~ 503 (540)
.+.. +.+..+|..+...|.+.|++++|...|+++.+... . .+...|..+-.++. ..|+.+.+.++.+
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS-LMDQPELFQAANL 351 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH-HHTCHHHHHHHHT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH-HcCcHHHHHHHHH
Confidence 6653 23466777777777777777777777777663210 0 02455666666554 5667766666554
Q ss_pred H
Q 042609 504 D 504 (540)
Q Consensus 504 ~ 504 (540)
+
T Consensus 352 ~ 352 (365)
T 4eqf_A 352 G 352 (365)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-15 Score=145.63 Aligned_cols=274 Identities=14% Similarity=0.020 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFC 278 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 278 (540)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555556666666666666655443 3345555555566666666666666666655542 234555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHH--HHHcCCCHH
Q 042609 279 KGGKAKEAHVVYTLAREKKMYPPQSVVAFLI-SSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIR--SLCRMKDVH 355 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~ 355 (540)
..|++++|.+.|+++.+.. |+.......+ ... ++......+.. .+...|+++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------------CCTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 6666666666666665533 2211111110 000 00000001101 133344444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+|...++++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444332 1234445555555555555555555555544432 1134455555555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 042609 436 KNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP-----------NVDEYNKLIQSLCLKALDWRTAEKLLE 503 (540)
Q Consensus 436 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~g~~~~A~~l~~ 503 (540)
+.. +.+..+|..+...|.+.|++++|.+.++++.+..... +...|..+...+. +.|++++|.++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN-VMNRPDLVELTYA 310 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH-HTTCHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH-hcCCHHHHHHHHH
Confidence 432 2234555555555555555555555555554321110 2344444444443 5555555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-17 Score=156.75 Aligned_cols=286 Identities=14% Similarity=0.117 Sum_probs=137.9
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
+.|+.++|.+.++++.. ..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~~~----------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHH
Confidence 34678899999998743 35999999999999999999999976 367889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
+|..+++..++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..+-..+... |.+++|..+|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~-g~yeeA~~~Y~~a 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC-----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHh
Confidence 999988877764 4667889999999999999999998885 37777888888888887 9999999999976
Q ss_pred HhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042609 330 SGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY 409 (540)
Q Consensus 330 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 409 (540)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+. ....
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 46999999999999999999999998 278999999999999999999966554422 3444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL--EEFDCALKLLNEMKDVGVQP------NVDEY 481 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~ 481 (540)
-...++..|.+.|++++|..+++...... +.....|+-|..+|++- ++..+.+++|.. .-+++| +...|
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 45579999999999999999999998765 56678888888888875 344444444432 222222 34568
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 482 NKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 482 ~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..+...|+ +-++++.|.. .|.++
T Consensus 286 ~e~~~ly~-~~~e~d~A~~---tm~~h 308 (449)
T 1b89_A 286 AELVFLYD-KYEEYDNAII---TMMNH 308 (449)
T ss_dssp HHHHHHHH-HTTCHHHHHH---HHHHS
T ss_pred HHHHHHHH-hhchHHHHHH---HHHhC
Confidence 88887777 7889998886 44444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-15 Score=149.80 Aligned_cols=262 Identities=8% Similarity=-0.044 Sum_probs=178.3
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+.+.|++++|...|+.+.+..+. +..+|..+...|...|++++|+..|+++.+.. +.+..+|..+..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-----DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 555666788899999999999999998775 89999999999999999999999999998865 557899999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDS-----------EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLI 309 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 309 (540)
++...|++++|...++++++.. |+. ..+..+...|.+.|++++|..+|+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------ 201 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL------------------ 201 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHH------------------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH------------------
Confidence 9999999999999999998753 221 112223444444445555554444
Q ss_pred HHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 310 SSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
++...... .+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|+
T Consensus 202 ------------------~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 202 ------------------EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------------------HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ------------------HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 44443211 134455566666666666666666666666542 3356666777777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcC
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR-----------LSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~~~~~li~~~~~~g 457 (540)
+++|...|+++.+... .+..+|..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|
T Consensus 263 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 7777777776665521 24666667777777777777777777766653200 12466777777777777
Q ss_pred CHHHHHHHHHH
Q 042609 458 EFDCALKLLNE 468 (540)
Q Consensus 458 ~~~~A~~~~~~ 468 (540)
+.+.+..+..+
T Consensus 342 ~~~~a~~~~~~ 352 (365)
T 4eqf_A 342 QPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHTT
T ss_pred cHHHHHHHHHh
Confidence 77777766554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=143.70 Aligned_cols=252 Identities=14% Similarity=0.151 Sum_probs=163.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQ--ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
......|++++|+..+++.... .|+. .....+.++|...|+++.|...++. .-.|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3344567777777777765443 2332 3445566777777777777665533 124556667777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 283 AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 283 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
.++|.+.++++...+..|+...+...+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776655565555444443333333777777777765 2345567777777778888888888888
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 363 KMISEGPPPGNAVF---NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 363 ~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|...|+++.+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777653 332211 12233344457778888888777766 23467777777777778888888888888777653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDC-ALKLLNEMKDV 472 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 472 (540)
+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3466777777777777777765 46777777654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-15 Score=144.29 Aligned_cols=278 Identities=8% Similarity=-0.062 Sum_probs=209.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+-.+...+...|++++|..+|+.+.+..+. +..+|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 344555777889999999999999887765 88999999999999999999999999998864 557889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCchH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISS-LCQEDETV 319 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~ 319 (540)
.+...|++++|.+.++++.+... .+...+..+.... |+......+-.. .....|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 99999999999999999998642 1222222221100 111111111122 12223788
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
++|...++++...... +...+..+...|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...|+++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888887765432 56678888888889999999999999888763 346778888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL-----------SPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
.+.. +.+..++..+...|.+.|++++|...++++.+..... +...|..+..+|.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7763 2367888899999999999999999999888753221 467889999999999999999998875
Q ss_pred HH
Q 042609 469 MK 470 (540)
Q Consensus 469 m~ 470 (540)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-12 Score=132.14 Aligned_cols=317 Identities=11% Similarity=0.033 Sum_probs=261.1
Q ss_pred HHHHHHHh----hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHH
Q 042609 163 ALLKAICS----SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK----LGKGKAAFEVFNKFGDYGCVANQET 234 (540)
Q Consensus 163 ~li~~~~~----~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~p~~~t 234 (540)
.+...+.. .++.++|...|++..+.+ +...+..|...|.. .+++++|+..|++..+.| +...
T Consensus 80 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 149 (490)
T 2xm6_A 80 VLGLRYMNGEGVPQDYAQAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG 149 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 34445555 688999999999887642 67888889999988 889999999999998875 5677
Q ss_pred HHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042609 235 YYFTIEALSR----RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK----GGKAKEAHVVYTLAREKKMYPPQSVVA 306 (540)
Q Consensus 235 ~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 306 (540)
+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +...+.
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 223 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQL 223 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 789999999999999875 67888889999988 899999999999998865 344555
Q ss_pred HHHHHHHh---CCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 307 FLISSLCQ---EDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSV 379 (540)
Q Consensus 307 ~ll~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 379 (540)
.+-..+.. ..++.++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..|
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~L 297 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYL 297 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 55555543 1389999999999988765 45567777777777 899999999999998764 55677788
Q ss_pred HHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 380 ISAYSKA-----GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG---QMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 380 i~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
...|... +++++|...|++..+.| +...+..+-..|...| +.++|...|++..+.| +...+..|..
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 371 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGN 371 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 8888887 89999999999999875 5667778888887766 8899999999999975 7888999999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 042609 452 GYCK----LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 452 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A~~l~~~m~~~g~~ 511 (540)
.|.. .+++++|...|++..+.| +...+..|-..|. + .+++++|.+.|++..+.|..
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY-YGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9998 899999999999999875 5667777776665 5 68999999999999998854
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-12 Score=129.20 Aligned_cols=307 Identities=12% Similarity=0.012 Sum_probs=255.8
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK----LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR-- 244 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~-- 244 (540)
.+++++|...|++..+.+ +...+..|...|.. .+++++|++.|++..+.| +...+..+...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG-------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 678899999999887642 67899999999999 999999999999998865 66778888888888
Q ss_pred --CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---C
Q 042609 245 --RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK----GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ---E 315 (540)
Q Consensus 245 --~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~ 315 (540)
.+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +...+..+-..+.. .
T Consensus 126 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCC
Confidence 789999999999998875 56778888888887 789999999999998865 35555555555554 1
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AG 387 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 387 (540)
.++.++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+-..|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 389999999999988765 45667778888876 889999999999998764 45677777777877 89
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANG-----GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---EF 459 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~ 459 (540)
+.++|...|++..+.| +...+..+-..|... ++.++|...+++..+.| +...+..|...|...| +.
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 9999999999998774 566777888888887 89999999999999986 6678888888888767 88
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 042609 460 DCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A~~l~~~m~~~g 509 (540)
++|.+.|++..+.| +...+..+-..|. . .+++++|.++|++..+.|
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999874 6677777777665 5 689999999999999876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-14 Score=135.46 Aligned_cols=274 Identities=12% Similarity=0.023 Sum_probs=210.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.....|.+..|...++.+....+. ......-.+..+|...|+++.|+..++.. -+|+..++..+...+...+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~----~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPE----RDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHH----HHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHhcccCCch----hhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 334568888999888765443332 11346677889999999999999877552 3678889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
+.++|.+.+++++..+..| +...+..+...|.+.|++++|.+.+++ ..+...+..+...+.+. |+.++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~-g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL-DRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 9999999999999877545 566677788999999999999999987 35567777777787877 999999999
Q ss_pred HHHhHhccCCCCcccH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 326 LDDFSGEARKYAIKPF---SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
|+++.... |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|++..+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998764 443211 22334455669999999999999987 4568889999999999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 403 GLKPDVYTYTGLMSGYANGGQMEE-ACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALK 464 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 464 (540)
.. -+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..
T Consensus 230 ~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 DS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 43 277889999999999999876 678999988864 44332 2334445555555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-12 Score=134.32 Aligned_cols=335 Identities=9% Similarity=-0.018 Sum_probs=225.0
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..++. +.+.|+.++|..+|+.+.+..+. +...|..++..+.+.|++++|..+|++..... |+...|...+..
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~-----~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQFPS-----SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 33444 35678888888999888887665 78888888888888899999999998888753 677777666643
Q ss_pred H-HhCCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042609 242 L-SRRKIFDWAWS----VCEKMIET-GSLP-DSEKVGKIISWFCK---------GGKAKEAHVVYTLAREKKMYPPQSVV 305 (540)
Q Consensus 242 ~-~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~ 305 (540)
. ...|+++.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..+.........|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34566666554 66665442 4433 45667776666554 67788888888877662111111222
Q ss_pred HHHHHH---H---------HhCCchHHHHH--------------------------------------------------
Q 042609 306 AFLISS---L---------CQEDETVKLAL-------------------------------------------------- 323 (540)
Q Consensus 306 ~~ll~~---~---------~~~~~~~~~a~-------------------------------------------------- 323 (540)
...... + ....+.+..|.
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 211110 0 00112233333
Q ss_pred ----------HHHHHhHhccCCCCcccHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 324 ----------DMLDDFSGEARKYAIKPFSSVIRSLCR-------MKDVH-------GAKTLLSKMISEGPPPGNAVFNSV 379 (540)
Q Consensus 324 ----------~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~l 379 (540)
.+|++..... +.+...|......+.+ .|+++ +|..+|++..+.-.+.+...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3333333221 1133345555555554 68877 899999998863234467889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG-YCKL 456 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~ 456 (540)
+..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 99999999999999999999886 454 3578888888889999999999999998863 2233333333222 3468
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 457 EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
|+.++|..+|++..+.. +-+...|..++..+. +.|+.++|..+|++....+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~-~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHSCC
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-hCCCHhhHHHHHHHHHhccC
Confidence 99999999999988642 235777888887665 88999999999999988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=146.39 Aligned_cols=260 Identities=15% Similarity=0.123 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
+..-+.||. +.|+.++|.++++++. +..+|..+..++.+.|++++|.+.|.+ .+|..+|..++..
T Consensus 6 ~~a~~~ll~---~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ 70 (449)
T 1b89_A 6 TSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH---HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHH
Confidence 334444543 6788999999999983 234999999999999999999999965 2677899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (540)
+...|++++|+++++..++. .++..+.+.++.+|.+. |+++++.++++ .|+..+|..+...|...|++++
T Consensus 71 ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred HHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999988877663 45567788889898887 99999988874 3667799999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
|...|..+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999977 37999999999999999999999988 2889999999999999999999665544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042609 437 NHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLED 504 (540)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~ 504 (540)
+..++.-...++..|.+.|++++|..+++...... .-....|+-|--.|+ +- +.++..+-++.
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~-ky-~p~k~~ehl~~ 265 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS-KF-KPQKMREHLEL 265 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH-TT-CHHHHHHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH-hc-CHHHHHHHHHH
Confidence 23344556679999999999999999999988554 445667777766665 33 34544444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=121.60 Aligned_cols=226 Identities=17% Similarity=0.107 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCC----HHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS--LPD----SEK 269 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~ 269 (540)
....|..+...+...|++++|+..|++..+.. .+..+|..+..++...|++++|...++..++... .++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888888889999999999999888776 7788888888889999999999999888876531 122 577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHH
Q 042609 270 VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLC 349 (540)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 349 (540)
+..+...|.+.|++++|...|+++.+.. |+... +... |++++|...++.+....
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------~~~~-~~~~~a~~~~~~~~~~~---------------- 135 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADI-------LTKL-RNAEKELKKAEAEAYVN---------------- 135 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH-------HHHH-HHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHH-------HHHH-hHHHHHHHHHHHHHHcC----------------
Confidence 8888888888888888888888877644 33211 1122 55555555555544321
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 350 RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACE 429 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 429 (540)
+.+...+..+...|...|++++|...|++..+... .+..+|..+...|...|++++|..
T Consensus 136 --------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 136 --------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 11233444445555555555555555555544321 134555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 430 ILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 430 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.++++.+.. +.+...|..+...|.+.|++++|...|++..+
T Consensus 195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555542 22355555666666666666666666665553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-12 Score=131.67 Aligned_cols=344 Identities=13% Similarity=0.002 Sum_probs=222.5
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhccc----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----C--
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEK----EKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY-----G-- 227 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g-- 227 (540)
..|+.+...+...|++++|.+.|++..++.+. ........+|+.+...|...|++++|+..|++..+. +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 35677777888899999999999887665322 112235789999999999999999999999887542 1
Q ss_pred CCCCHHHHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC-
Q 042609 228 CVANQETYYFTIEALSR--RKIFDWAWSVCEKMIETGSLPDSEKVGKIISW---FCKGGKAKEAHVVYTLAREKKMYPP- 301 (540)
Q Consensus 228 ~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~- 301 (540)
-.....++.....++.. .+++++|...|++.++.. +-+...+..+..+ +...++.++|.+.|++..+.+ |+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~ 208 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN 208 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence 11235667666555554 457999999999998864 2345555555444 445678889999999888755 43
Q ss_pred HHHHHHHHHHHH---hCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 302 QSVVAFLISSLC---QEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNS 378 (540)
Q Consensus 302 ~~~~~~ll~~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 378 (540)
...+..+-..+. ...++.++|...+++..... +.+...+..+...|.+.|++++|...+++..+.. +-+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 333333322222 23377889999999887654 3355668889999999999999999999998763 335666666
Q ss_pred HHHHHHhc-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 379 VISAYSKA-------------------GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 379 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
+...|... +..++|...|+...+... .+..++..+...|...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66555432 235677777877766532 2456788888999999999999999999988753
Q ss_pred CCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHHhCC
Q 042609 440 RLSP--VTYHTLIR-GYCKLEEFDCALKLLNEMKDVGV-----------------------QPNVDEYNKLIQSLCLKAL 493 (540)
Q Consensus 440 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~-----------------------~p~~~~~~~ll~~~~~~~g 493 (540)
.+.. ..+..+.. .+...|+.++|+..|++..+... +.+..+|+.+-..|. ..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~-~~g 444 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE-LNE 444 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH-HHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcC
Confidence 3222 12333332 24578999999999988875421 112234444443333 455
Q ss_pred CHHHHHHHHHHHHHCC
Q 042609 494 DWRTAEKLLEDMRLKG 509 (540)
Q Consensus 494 ~~~~A~~l~~~m~~~g 509 (540)
++++|++.|++.++.|
T Consensus 445 ~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 445 KMQQADEDSERGLESG 460 (472)
T ss_dssp HCC-------------
T ss_pred CHHHHHHHHHHHHhcC
Confidence 6666666666665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=121.64 Aligned_cols=232 Identities=14% Similarity=0.067 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
..|..+...+...|++++|..++++.++.. .+..++..+...|...|++++|...|+.+.+.. |+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~----------- 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--RE----------- 70 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cc-----------
Confidence 445556666666666666666666666654 555666666666666666666666666544321 00
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
...+.. .....+..+...+...|++++|...|++.... .|+. ..+.+.|++++|
T Consensus 71 --~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 71 --MRADYK---------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp --TTCCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHH
T ss_pred --cccchH---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHH
Confidence 000000 00345777888888889999999999888874 3442 456677899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 393 MEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 393 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
...++.+..... .+...+..+...|...|++++|...++++.+.. +.+..+|..+...|.+.|++++|...+++..+.
T Consensus 125 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999988732 256778889999999999999999999999875 447889999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 473 GVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 473 g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
. +.+...|..+...+. +.|++++|.+.+++..+..
T Consensus 203 ~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQI-AVKEYASALETLDAARTKD 237 (258)
T ss_dssp C-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhC
Confidence 3 235677777777776 8899999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-11 Score=125.61 Aligned_cols=308 Identities=14% Similarity=0.010 Sum_probs=217.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----C
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDY--------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET-----G 262 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g 262 (540)
....||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++.++. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4578999999999999999999999887541 12345778999999999999999999999987653 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHH--hCCchHHHHHHHHHHhHhccCC
Q 042609 263 -SL-PDSEKVGKIISWFCKG--GKAKEAHVVYTLAREKKMYPPQSVVA-FLISSLC--QEDETVKLALDMLDDFSGEARK 335 (540)
Q Consensus 263 -~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~--~~~~~~~~a~~~~~~m~~~~~~ 335 (540)
.. ....++..+..++.+. +++++|...|++..+.+ |+...+. .+...+. ...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 2356666666566554 57999999999998865 5544333 2222221 1226667888888887765322
Q ss_pred CCcccHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 336 YAIKPFSSVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 336 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
+...+..+...+.. .++.++|..++++..... +.+..++..+...|.+.|++++|...+++..+.... +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 34445555545544 467889999999988763 446778899999999999999999999998876322 56667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 412 TGLMSGYANG-------------------GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 412 ~~ll~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
..+..+|... +..++|...+++..+.. +.+..++..+...|...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555432 33567888888877754 335567888999999999999999999999876
Q ss_pred CCCCCHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 473 GVQPNVD--EYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 473 g~~p~~~--~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
...+... .+..+...+..+.|++++|++.|++..+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4433221 122222222237889999999999988753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-13 Score=125.81 Aligned_cols=250 Identities=12% Similarity=0.033 Sum_probs=165.9
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..+++++|...|+.+.+..+. ....+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 347788999999988875321 000157889999999999999999999999998765 457889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
+|...+++.++.. +.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+... |++++|...++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQK-LDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 9999999998864 3467888999999999999999999999988754 5444444444333444 7778888877666
Q ss_pred HhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042609 330 SGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP---GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP 406 (540)
Q Consensus 330 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 406 (540)
.... .++.. ...++..+...++.++|...+++........ +...+..+...|.+.|++++|...|++..+.. |
T Consensus 171 ~~~~-~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 5542 22222 2335556666666677777777665431110 13455555566666666666666666655442 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 407 DVYTYTGLMSGYANGGQMEEACEIL 431 (540)
Q Consensus 407 ~~~t~~~ll~~~~~~g~~~~A~~~~ 431 (540)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 112233444455555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.7e-11 Score=121.15 Aligned_cols=218 Identities=11% Similarity=0.027 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------CCchHH-------HHHHHHHHhHhccCCCCcccHHHHHHHHHcC
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQ------EDETVK-------LALDMLDDFSGEARKYAIKPFSSVIRSLCRM 351 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 351 (540)
+|..+|++..... .-+...|......+.. ..|+.+ +|..+|++....-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777766643 2345556555555443 137766 8999999987632233566788999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHH
Q 042609 352 KDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS-GYANGGQMEEAC 428 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~A~ 428 (540)
|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+... .+...|..... .+...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999985 443 35899999999999999999999999987622 12233322222 234689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-VQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
.+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.. ..+.|+.+.+.++++++
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~-e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF-ESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH-HHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 9999998863 3468899999999999999999999999999763 2332 4467777764 45789999999999999
Q ss_pred HHC
Q 042609 506 RLK 508 (540)
Q Consensus 506 ~~~ 508 (540)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-12 Score=115.23 Aligned_cols=200 Identities=12% Similarity=0.002 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667777777777888888888887776653 4466677777777777777777777777776653 2356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
|...|++++|.++|+++.+.+..|+.. .+..+...+... |++++|...|++...... .+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHH
Confidence 777777777777777665522223222 222222222222 444444444444433221 12233344444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
+|...++++.+.. +.+...+..+...|.+.|++++|.++++++.+
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444443321 12333344444444444444444444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-11 Score=111.21 Aligned_cols=223 Identities=14% Similarity=0.001 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR----RKIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
+..++..+...|...|++++|++.|++..+. -+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666777777777777777777777776662 344566666666666 667777777776666654 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHH
Q 042609 272 KIISWFCK----GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347 (540)
Q Consensus 272 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 347 (540)
.+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------------------------------------~~~a~~~lg~~ 119 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------------------------------------YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------------------------------------CccHHHHHHHH
Confidence 66666665 556666655555544432 12223333333
Q ss_pred HHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 348 LCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 348 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+-..|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 333 455555555555555443 33444455555555 556666666665555542 3445555555555
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 042609 420 N----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDV 472 (540)
Q Consensus 420 ~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 472 (540)
. .+++++|...+++..+.+ +...+..+...|.+ .+++++|.+.|++..+.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5 566666666666655553 24455555555555 55666666666655544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-11 Score=129.12 Aligned_cols=257 Identities=15% Similarity=0.125 Sum_probs=178.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
...+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAK 1113 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHH
Confidence 44455566667888888888876432 3334444443 667788888887754 33667778888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
++.+.|++++|.+.|.+. -|...|..++..+.+.|++++|.+.|...++.. ++....+.+..+|++. ++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl-~rle 1184 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT-NRLA 1184 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh-cCHH
Confidence 888888888888888552 466677778888888888888888887766654 2222233466666666 6666
Q ss_pred HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
+...+.+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++..
T Consensus 1185 ele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 5443321 234455667778888888888888888874 367888888888888888888887652
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 401 SRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 401 ~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.
T Consensus 1249 ------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1249 ------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred ------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 667788787888888887777776553 233566667778888888888888888877664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=117.72 Aligned_cols=208 Identities=12% Similarity=0.039 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 66788888888888889999998888887764 5577888888888888888888888888888764 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
+|.+.+. .. .. ..... |++++|+..|++..+.... +...+..+...+...|+++
T Consensus 82 ~~~~~~~-------------~~--~~---------~~~~~-g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALYR-------------QA--ED---------RERGK-GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHH-------------TC--SS---------HHHHH-HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhh-------------hh--hh---------hcccc-cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 7766610 00 00 00011 4455555555544443211 2334555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+|...|++..+.. .+...+..+..+|...|++++|...|++..+... -+...+..+...+.+.|++++|...+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666665544 4555566666666666666666666666555421 24455555666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-12 Score=112.78 Aligned_cols=200 Identities=13% Similarity=0.028 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56678888888888888888888888887654 4467778888888888888888888888887753 346677777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC
Q 042609 276 WFCKG-GKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD 353 (540)
Q Consensus 276 ~~~~~-g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 353 (540)
.|... |++++|...|+++.+.+..|+. ..+..+...+... |++++|+..++++..... .+...+..+...+.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 88888 8888888888777662222322 2222222333332 444444444444433211 122333334444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
+++|...++++.+.....+...+..+...+...|+.++|..+++.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444444444433211123333333333344444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-11 Score=110.51 Aligned_cols=224 Identities=15% Similarity=-0.000 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ----EDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
..++..+...|...|++++|...|++..+.+ +...+..+-..+.. . +++++|+..|++..+.+ +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444455555555555555555555555421 12233333333333 3 56666666666665544 455666
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 343 SVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGL 414 (540)
Q Consensus 343 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 414 (540)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 899999999999998864 77888999999999 999999999999999875 67778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 415 MSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486 (540)
Q Consensus 415 l~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 486 (540)
-..|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+-.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 999999999999999875 67888889999999 999999999999999874 3566666666
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHCCC
Q 042609 487 SLCLK----ALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 487 ~~~~~----~g~~~~A~~l~~~m~~~g~ 510 (540)
.|. + .+++++|.+.+++..+.|.
T Consensus 227 ~~~-~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQY-NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHH-TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHH-cCCCcccCHHHHHHHHHHHHHcCC
Confidence 665 6 7899999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-11 Score=112.78 Aligned_cols=196 Identities=14% Similarity=0.006 Sum_probs=166.4
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
.+...+...|++++|...|+.+.+..+. +..+|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPS-----SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3444667789999999999999887664 78999999999999999999999999998764 45788999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 321 (540)
...|++++|.++++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. ..+...+..+...+... |++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE-REYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-CCHHH
Confidence 99999999999999998843344 56778889999999999999999999998865 23466677777777776 99999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE 367 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (540)
|...++.+..... .+...+..+...+.+.|+.++|...++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999887543 35566888889999999999999999999875
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-12 Score=114.63 Aligned_cols=210 Identities=12% Similarity=-0.037 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH
Q 042609 229 VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAF 307 (540)
Q Consensus 229 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ 307 (540)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|...|++..+.+ |+.. .+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 4566777788888888888888888888888764 3567778888888888888888888888877755 4433 2222
Q ss_pred HHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 308 LISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG 387 (540)
Q Consensus 308 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 387 (540)
+-..+... + ... .. .+...|++++|...|++..+.. +-+...+..+..+|...|
T Consensus 79 lg~~~~~~-~------------~~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 79 LSEAYVAL-Y------------RQA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHH-H------------HTC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-h------------hhh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC
Confidence 22221111 0 000 00 1123489999999999998863 336778889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
++++|+..|++..+.. .+...+..+..+|...|++++|...|++..+.. +-+...+..+...+.+.|++++|...|+
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998887 688999999999999999999999999999874 4467889999999999999999999998
Q ss_pred HHH
Q 042609 468 EMK 470 (540)
Q Consensus 468 ~m~ 470 (540)
+..
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-11 Score=108.99 Aligned_cols=199 Identities=9% Similarity=-0.076 Sum_probs=167.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+.+.+..+. +...|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPK-----NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 445566778889999999999999987765 78999999999999999999999999998764 457889999999
Q ss_pred HHHhC-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 241 ALSRR-KIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 241 ~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
.+... |++++|...++.+++.+..|+ ...+..+...+.+.|++++|...|+++.+.. ..+...+..+...+... |+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA-GQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc-CC
Confidence 99999 999999999999998433343 6778899999999999999999999998865 23356666677777776 99
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE 367 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (540)
+++|...+++........+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999887654245666888888889999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-11 Score=115.04 Aligned_cols=197 Identities=14% Similarity=0.048 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLP--DSEKVGKIISW 276 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~ 276 (540)
.+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++.+..+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34444555556666666666666655543 2233355555555666666666666666655532111 12335555556
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (540)
|...|++++|...|++..+.. ..+...+..+-..+... |++++|+..|++..... +.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555432 11112222222233332 44444444444333321 1112223333312222235555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGD---MTPAMEMLKLMR 400 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 400 (540)
|...|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555555544431 1223444444444444444 444554444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=122.32 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=129.2
Q ss_pred hcCChHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 209 KLGKGKAAFEVFNKFGDYGC---VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 285 (540)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 35778888888888876531 1245667777788888888888888888887763 2456777777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI 365 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (540)
|...|+++.+.. |+ +...+..+...|.+.|++++|...|+++.
T Consensus 96 A~~~~~~al~~~--~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 96 AYEAFDSVLELD--PT-----------------------------------YNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHC--TT-----------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cc-----------------------------------ccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 887777766543 21 22334444455555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C
Q 042609 366 SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL---S 442 (540)
Q Consensus 366 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~ 442 (540)
+. .|+.......+..+...|++++|...+++..... .++...+ .++..+...++.++|...+.++.+..... +
T Consensus 139 ~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 139 QD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred Hh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 43 2222223333333344456666666665544431 1222222 24444555555566666665554432100 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 443 PVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
...|..+...|.+.|++++|...|+++.+.
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 355666666666666666666666666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-10 Score=122.34 Aligned_cols=299 Identities=17% Similarity=0.094 Sum_probs=173.9
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH---------------------------h
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFS---------------------------K 209 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~---------------------------~ 209 (540)
++.-....++++...|...+|.++++++.-... ...-+....|.|+.... .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s--~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS--VFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC--cccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 344566777888888999999999998873221 01114455555554443 3
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVV 289 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 289 (540)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444455555554431 11111122211 344455555554432 2345566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042609 290 YTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP 369 (540)
Q Consensus 290 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 369 (540)
|.+. -+...|..++..+.+. |++++|.++|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1128 YiKA------dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 6442 2344455555555544 66666666666554433 22222334666666666666433321 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 370 PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 234455555666666667777776666653 35666777777777777777766654 245667666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 450 IRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
-.+|...|++..|......+ ..+...+..++..|- +.|.+++|+.+++.-...
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe-~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ-DRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcc
Confidence 66777777766666655432 235666778887765 899999999999877643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-12 Score=117.02 Aligned_cols=232 Identities=12% Similarity=0.005 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVA--NQETYYFT 238 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p--~~~t~~~l 238 (540)
.-.....+...|++++|...|+.+.+..+. +...|..+...|...|++++|++.|++..+.+-.+ ...+|..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 334455777889999999999999987765 66789999999999999999999999998743112 24458899
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCc
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDE 317 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~ 317 (540)
...+...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+.. |+. ..+..+-..++.. +
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~-~ 156 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYN-K 156 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHH-H
Confidence 999999999999999999998864 3466889999999999999999999999887753 444 4444444144555 6
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcC
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD---VHGAKTLLSKMISEG-PPPG------NAVFNSVISAYSKAG 387 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g 387 (540)
++++|...|++..+.... +...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|.+.|
T Consensus 157 ~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 999999999999876422 35667777788887787 888888888877531 1122 246677777888888
Q ss_pred ChhHHHHHHHHHHHC
Q 042609 388 DMTPAMEMLKLMRSR 402 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~ 402 (540)
++++|.+.|++..+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 888888888887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.8e-12 Score=114.01 Aligned_cols=201 Identities=14% Similarity=0.069 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 55677777888888888888888888887653 4567777778888888888888888888877653 346677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.|...|++++|.+.|+++.+.. ..+...+. .+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~------------------------------------~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFY------------------------------------MLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHH------------------------------------HHHHHHHHTSCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHH------------------------------------HHHHHHHHhccHH
Confidence 8888888888888877776543 11222333 3333344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+... .+..++..+...|...|++++|...++++.
T Consensus 143 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444443321 12344444445555555555555555555444321 134445555555555555555555555554
Q ss_pred HC
Q 042609 436 KN 437 (540)
Q Consensus 436 ~~ 437 (540)
+.
T Consensus 221 ~~ 222 (243)
T 2q7f_A 221 DI 222 (243)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-11 Score=117.70 Aligned_cols=154 Identities=6% Similarity=-0.087 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK-GKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
|..+...+...|++++|...|+.+.+..+. +..+|+.+...+...|+ +++|+..|++..+.. +-+...|+.+.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc-----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 334445666778899999999999988876 88999999999999996 999999999998865 45788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
.++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|...|+++.+.+ .-+...|+.+-..+....|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998874 3577888888889999999999999999888765 223455555544444422433
Q ss_pred HHH
Q 042609 320 KLA 322 (540)
Q Consensus 320 ~~a 322 (540)
++|
T Consensus 252 ~eA 254 (382)
T 2h6f_A 252 DRA 254 (382)
T ss_dssp SHH
T ss_pred hHH
Confidence 333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-11 Score=117.14 Aligned_cols=231 Identities=13% Similarity=0.046 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI-FDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
+...|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45678888889999999999999999998865 5578889999999999997 999999999999874 35778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCH
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (540)
.++.+.|++++|...|+++.+.+ .-+...|. .+..++.+.|++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~------------------------------------~lg~~~~~~g~~ 216 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQ------------------------------------HRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHH------------------------------------HHHHHHHHHTCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHH------------------------------------HHHHHHHHcCCh
Confidence 99999999999999999887755 11223333 333334444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSK-AGDMTPA-----MEMLKLMRSRGLKPDVYTYTGLMSGYANGG--QMEE 426 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~ 426 (540)
++|+..|+++++..+ -+...|+.+..+|.+ .|..++| +..|++..+.... +...|..+...+...| +.++
T Consensus 217 ~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 217 DNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp TTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHH
Confidence 555555555544321 234445555555554 3333444 2444444443211 3444555555555544 3455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---------EFDCALKLLNEM 469 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 469 (540)
|.+.+.++ +. ...+...+..+...|.+.| ..++|.++|+++
T Consensus 295 a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 295 LLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55555554 22 1233445555555555542 135555555555
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=113.53 Aligned_cols=195 Identities=13% Similarity=0.074 Sum_probs=133.0
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
.+...+...|++++|...|+.+.+..+. +...|..+...|...|++++|++.|+++.+.. +.+..++..+...+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKE-----DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp --------------CCTTHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3444566779999999999999886654 78999999999999999999999999998764 45788999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLA 322 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a 322 (540)
...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...++++.+.. ..+...+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~----------------- 162 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEAR----------------- 162 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHH-----------------
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHH-----------------
Confidence 99999999999999998864 3577888999999999999999999999887654 1123333
Q ss_pred HHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 323 LDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 323 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.
T Consensus 163 -------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 -------------------FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp -------------------HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 334444444455555555555544432 223445555555555555555555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-12 Score=126.40 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CC-CCCHHHHHH
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQ----ETYYFTIEALSRRKIFDWAWSVCEKMIET----GS-LPDSEKVGK 272 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 272 (540)
.+...+...|++++|+..|++..+.+ +.+. ..|..+...+...|++++|...+++.++. +. .....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34444455555555555555554432 1121 23444444555555555555555544332 10 112234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~ 294 (540)
+...|...|++++|...|++..
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-12 Score=124.79 Aligned_cols=273 Identities=13% Similarity=0.092 Sum_probs=191.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTV----EILNELIALFSKLGKGKAAFEVFNKFGDY----G-CVANQET 234 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g-~~p~~~t 234 (540)
+...+...|++++|...|+.+.+..+. +. .+|..+...|...|++++|+..|++..+. + .+....+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344667789999999999999987654 44 57899999999999999999999988653 1 1234567
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIETG-----SLPDSEKVGKIISWFCKGGK-----------------AKEAHVVYTL 292 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 292 (540)
+..+...+...|++++|...+++.++.. ......++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999999886641 11224467778888888888 6666666555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-C
Q 042609 293 AREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-P 371 (540)
Q Consensus 293 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p 371 (540)
..+ +...... .......+..+...|...|++++|...+++..+.... .
T Consensus 209 al~-----------------------------~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 209 NLK-----------------------------LMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHH-----------------------------HHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-----------------------------HHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 332 1111100 0001234566667777777777777777776543110 1
Q ss_pred C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 042609 372 G----NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL----K-PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS--- 439 (540)
Q Consensus 372 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--- 439 (540)
+ ..++..+...|...|++++|...|++..+... . ....++..+...|...|++++|...+++..+...
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 23677778888888888888888877654311 0 1246777888888889999999888888765310
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 440 --RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 440 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.....++..+...|.+.|++++|...|++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111357788888999999999999999988754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-11 Score=120.47 Aligned_cols=273 Identities=13% Similarity=0.045 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-C
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIET----GSLP-D 266 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 266 (540)
....+......+...|++++|+..|++..+.+ +.+ ..+|..+...+...|++++|...+++.+.. +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45566667777777777778877777776653 223 345666777777777777777777765433 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCch--------------------HHH
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPP----QSVVAFLISSLCQEDET--------------------VKL 321 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~--------------------~~~ 321 (540)
..++..+...|...|++++|...+++..+... .++ ...+..+-..+... |+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHH
Confidence 44566777777788888888877776654210 011 11333344444444 67 777
Q ss_pred HHHHHHHhHhccC-----CCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhH
Q 042609 322 ALDMLDDFSGEAR-----KYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PPG----NAVFNSVISAYSKAGDMTP 391 (540)
Q Consensus 322 a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 391 (540)
|...+++...... .....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 7777766543210 01123467777888888888888888888764311 112 2367778888888899998
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 042609 392 AMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNHS-RLS----PVTYHTLIRGYCKLEEFDC 461 (540)
Q Consensus 392 A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 461 (540)
|...+++..+. +..+ ...++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888876543 1111 145677788888888898888888888765311 112 4577788888888889888
Q ss_pred HHHHHHHHH
Q 042609 462 ALKLLNEMK 470 (540)
Q Consensus 462 A~~~~~~m~ 470 (540)
|...+++..
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-10 Score=109.38 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=137.3
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 175 KEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK-------LGKG-------KAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 175 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
++|..+|++..+..+. ++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++.
T Consensus 33 ~~a~~~~~~al~~~p~-----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4688889988887765 88999999888764 5776 889999988887312345668888888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPD-SE-KVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
.+.+.|++++|..+|++.++. .|+ .. +|..++..+.+.|++++|..+|++..+.+. .+...|........
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~----- 179 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEY----- 179 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHH-----
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH-----
Confidence 888888999999999888875 343 33 788888888888888888888888776441 12222221111101
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
...|+.++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++
T Consensus 180 ------------------------------~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 180 ------------------------------YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp ------------------------------HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ------------------------------HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12355555555555554431 22444555555555555555555555555
Q ss_pred HHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 399 MRSRG-LKP--DVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 399 m~~~g-~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
..... +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55542 232 2445555555555555555555555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=121.54 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC-CCHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIET----GSL-PDSE 268 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~ 268 (540)
..+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++.++. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 334444555566666666666666665542 122 244555566666666666666666554432 111 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 269 KVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
++..+...|...|++++|...+++..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556666666666666666666554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=122.27 Aligned_cols=290 Identities=13% Similarity=0.040 Sum_probs=213.0
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT----VEILNELIALFSKLGKGKAAFEVFNKFGDY----GCVA-NQET 234 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~p-~~~t 234 (540)
....+...|++++|...|+.+.+..+. + ..+|..+...|...|++++|+..|++.... +-.| ...+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 344667789999999999999887553 4 467899999999999999999999987542 2122 2557
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVGKIISWFCKGGK--------------------AKEAHVV 289 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 289 (540)
+..+...+...|++++|...+++.++... .++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 88888999999999999999998876411 012 4478888999999999 9999999
Q ss_pred HHHHHHc----CCCCCH-HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-CC----cccHHHHHHHHHcCCCHHHHHH
Q 042609 290 YTLAREK----KMYPPQ-SVVAFLISSLCQEDETVKLALDMLDDFSGEARK-YA----IKPFSSVIRSLCRMKDVHGAKT 359 (540)
Q Consensus 290 ~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 359 (540)
+++.... +..+.. ..+..+-..+... |++++|...+++....... ++ ..++..+...|...|++++|..
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 8876542 111211 2344455555555 9999999999987654221 11 2268888999999999999999
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 042609 360 LLSKMISEGPP-PG----NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYTGLMSGYANGGQMEEACE 429 (540)
Q Consensus 360 ~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~ 429 (540)
.+++....... .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988743111 11 55788889999999999999999988765311 112 5678888899999999999999
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCH
Q 042609 430 ILNEAKKN----HSR-LSPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 430 ~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~ 459 (540)
.+++..+. +.. ....++..+...|...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99987653 211 1235666677777776665
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-09 Score=104.55 Aligned_cols=236 Identities=9% Similarity=0.018 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhc----CCh----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-------hCCCh-------hHHHHH
Q 042609 197 VEILNELIALFSKL----GKG----KAAFEVFNKFGDYGCVANQETYYFTIEALS-------RRKIF-------DWAWSV 254 (540)
Q Consensus 197 ~~~~~~li~~~~~~----g~~----~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~ 254 (540)
...|...+..--+. ++. ++|+.+|++..... +-+...|......+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555544332 222 67778888877643 456667777666664 34664 667777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccC
Q 042609 255 CEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEAR 334 (540)
Q Consensus 255 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~ 334 (540)
|++.++.-.+-+...|..++..+.+.|++++|..+|+++.+.. |+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~--------------------------------- 131 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DI--------------------------------- 131 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SS---------------------------------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--cc---------------------------------
Confidence 7776662112344566666666666666666666666655422 21
Q ss_pred CCCcc-cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 335 KYAIK-PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAY-SKAGDMTPAMEMLKLMRSRGLKPDVYTYT 412 (540)
Q Consensus 335 ~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 412 (540)
+.. .|..+...+.+.|++++|..+|++..+... .+...|....... ...|++++|..+|+...+... -+...|.
T Consensus 132 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 207 (308)
T 2ond_A 132 --DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVL 207 (308)
T ss_dssp --CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred --CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 111 455666666667777777777777776532 3444454433332 236999999999999887632 2678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 413 GLMSGYANGGQMEEACEILNEAKKNH-SRL--SPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 413 ~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999963 354 4678999999999999999999999999864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-10 Score=115.46 Aligned_cols=305 Identities=10% Similarity=0.004 Sum_probs=171.4
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH--HHhcCChHHHH-----------HHHHHHhhCCCCCCHH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIAL--FSKLGKGKAAF-----------EVFNKFGDYGCVANQE 233 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~-----------~~f~~m~~~g~~p~~~ 233 (540)
...+.+++++|..+.+.+.+........++...|-.++.. ....+.++.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 4567789999999999887754331111344444554433 12233344444 6666654421 1111
Q ss_pred H------HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 234 T------YYFTIEALSRRKIFDWAWSVCEKMIETGS-LP----DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 234 t------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
. +......+...|++++|...+++..+.-- .+ ...++..+...|...|++++|...+++..+..
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 173 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY----- 173 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----
Confidence 1 22245566788899999988888876410 12 24567788888888888888888887765421
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-PG----NAVFN 377 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~ 377 (540)
...++.. .....+++.+...|...|++++|...|++..+.... ++ ..++.
T Consensus 174 -----------~~~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 174 -----------KEHEAYN--------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp -----------HTCSTTH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------HhCccch--------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0001000 000123555556666666666666666665432100 11 23566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSR----GL-KPDVYTYTGLMSGYANGGQMEEACEILNEAKKN----HSRLSPVTYHT 448 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ 448 (540)
.+...|...|++++|...|++..+. +. .....++..+...|.+.|++++|...+++..+. +-+.....+..
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666777777777777777666551 22 223456666777777777777777777766543 11111223455
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 449 LIRGYCKLEE---FDCALKLLNEMKDVGVQPNVDE-YNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 449 li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
+...|...|+ +++|+.++++. +..|+... +..+-..| .+.|++++|.+.+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y-~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYY-HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHH
Confidence 6666777777 56666666554 22333333 33333333 467777777777777653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-11 Score=116.36 Aligned_cols=272 Identities=14% Similarity=0.117 Sum_probs=189.7
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLT----VEILNELIALFSKLGKGKAAFEVFNKFGDY----GCV-ANQETY 235 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~-p~~~t~ 235 (540)
...+...|++++|...|+.+.+..+. + ..+|..+...|...|++++|++.|++..+. +-. ....++
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34567789999999999999887553 4 468889999999999999999999987542 212 235678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVGKIISWFCKGGK--------------------AKEAHVVY 290 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 290 (540)
..+...+...|++++|...+++.++... .++ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999998765411 122 3467778888888888 66666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--
Q 042609 291 TLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-- 368 (540)
Q Consensus 291 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 368 (540)
++.... .+.... .......+..+...+...|++++|...+++..+..
T Consensus 167 ~~a~~~-----------------------------~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 167 EENLSL-----------------------------VTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHH-----------------------------HHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------------HHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 554321 111000 00012245566667777777777777777765321
Q ss_pred --C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 042609 369 --P-PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYTGLMSGYANGGQMEEACEILNEAKKNH-- 438 (540)
Q Consensus 369 --~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-- 438 (540)
. .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 0 11123677788888888898888888887654310 011 5567778888889999999999888876531
Q ss_pred --C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 439 --S-RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 439 --~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
- .....++..+...|.+.|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 111357788888999999999999999988754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=117.24 Aligned_cols=240 Identities=14% Similarity=0.116 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDY-------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET------G 262 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g 262 (540)
+..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+++.++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888887662 22344566777788888888888888888877654 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC
Q 042609 263 S-LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK------KMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK 335 (540)
Q Consensus 263 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~ 335 (540)
- .....++..+...|...|++++|...|+++.+. +..|..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--------------------------------- 152 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV--------------------------------- 152 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH---------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH---------------------------------
Confidence 1 223456777778888888888888888776542 111111
Q ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----
Q 042609 336 YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE------GPPP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG----- 403 (540)
Q Consensus 336 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----- 403 (540)
...+..+...+...|++++|..+++++.+. +..| ...++..+...|...|++++|...++++.+..
T Consensus 153 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 153 --AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp --HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 122333444444444444444444444332 1111 22344555555555555555555555544310
Q ss_pred --C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 404 --L---KP----DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 404 --~---~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
. .+ ....+..+...+...+.+.++...++...... +.+..+|..+...|.+.|++++|.++|++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 00 11223333334444555555666666655432 22345667777777777777777777776653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=115.71 Aligned_cols=314 Identities=15% Similarity=0.038 Sum_probs=154.6
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKG---KAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
.....+.|++++|...|+...+.+ +...+..|...|...|+. ++|++.|++..+. +...+..+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g-------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG-------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-------CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 334556788888888888776643 344566666666677777 7888888877653 44555555554
Q ss_pred HHhCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCC---------------
Q 042609 242 LSRRK-----IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE---AHVVYTLAREKKM--------------- 298 (540)
Q Consensus 242 ~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~--------------- 298 (540)
+...+ ++++|...|++..+.|. ++ .+..|...|...+..++ +.+.+......|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 44444 66778888888777653 22 34444444444333221 2222222222221
Q ss_pred -----------------CCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcC----CCH
Q 042609 299 -----------------YPPQSVVAFLISSLCQEDE---TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRM----KDV 354 (540)
Q Consensus 299 -----------------~p~~~~~~~ll~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~ 354 (540)
..+...+..+-..+... | +.++|+..|+...+.|.. +...+..+...|... ++.
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKK-QQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 11111333333333333 5 666666666666655422 222224455555433 566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISA-Y--SKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG-----QMEE 426 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~ 426 (540)
++|...|++.. . -+...+..|-.. | ...+++++|...|++..+.| +...+..|-..|. .| +.++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 66777766665 2 233444444444 2 34666777777777666654 4555555555555 33 6777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHH
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTA 498 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A 498 (540)
|...|++.. .| +...+..|...|.. ..+.++|...|++..+.|. ++ ....|-..|. . ..+.++|
T Consensus 306 A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~-~G~g~~~d~~~A 377 (452)
T 3e4b_A 306 AEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFS-QGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHH-SCTTBCCCHHHH
T ss_pred HHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHH-hCCCCCCCHHHH
Confidence 777776666 33 55556666655554 2366777777777666553 22 2333333332 2 2366777
Q ss_pred HHHHHHHHHCCC
Q 042609 499 EKLLEDMRLKGL 510 (540)
Q Consensus 499 ~~l~~~m~~~g~ 510 (540)
..+|+...+.|.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 777777766664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-10 Score=110.78 Aligned_cols=185 Identities=15% Similarity=0.009 Sum_probs=126.9
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-C
Q 042609 339 KPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PP-----GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----GLKP-D 407 (540)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 407 (540)
.++..+...|...|++++|...+++..+.-. .+ ...+++.+...|...|++++|...|++..+. +-.+ .
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3466777777888888888888877764311 11 2457888899999999999999999887643 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC-H
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKN----HS-RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG---VQPN-V 478 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~ 478 (540)
..++..+...|...|++++|...+++..+. +. +....++..+...|.+.|++++|...+++..+.. -.|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 247888999999999999999999998872 22 3346789999999999999999999999876321 0122 2
Q ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCcHHH-H-HHHHHHHHHH
Q 042609 479 DEYNKLIQSLCLKALD---WRTAEKLLEDMRLKGLHLNGIT-R-ALIRAVKELE 527 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t-~-~ll~a~~~l~ 527 (540)
..+..+- .+....|+ +++|+.++++. +..++... + .+...+...+
T Consensus 304 ~~~~~l~-~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 304 SEFEFLK-SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHHHHH-HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCC
Confidence 2334444 44447888 77777777665 44444322 2 4444444433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=116.59 Aligned_cols=248 Identities=12% Similarity=0.044 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIET-------GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
.+..++..+...+...|++++|..+++++++. .......++..+...|...|++++|...|++.....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Confidence 35667888889999999999999999998873 223345667888888999999999988888765421
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC------CC-CCCHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE------GP-PPGNAV 375 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~ 375 (540)
+.............+..+...|...|++++|...++++.+. +. +.....
T Consensus 100 ------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 100 ------------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp ------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 00000000111234666677777778888887777777643 22 224557
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSR------GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNH-------SRL 441 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-------~~p 441 (540)
+..+...|...|++++|..+|+++.+. +..| ...++..+...|...|++++|...++++.+.. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 888899999999999999999998764 2223 34678889999999999999999999988631 111
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 442 -------SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 442 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
....+..+...+...+.+.++...+....... ..+..++..+...|. +.|++++|.+++++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYR-RQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence 12345555666777888888888888887542 224456667776665 889999999999988753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-10 Score=117.56 Aligned_cols=209 Identities=9% Similarity=-0.093 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKG-KAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAW 252 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (540)
.+++...++......+. +...|..+...|...|++ ++|++.|++..+.. +-+...|..+..+|.+.|++++|.
T Consensus 84 ~~~al~~l~~~~~~~~~-----~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV-----EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccCch-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45666667665554433 788899999999999999 99999999987764 446888888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC------
Q 042609 253 SVCEKMIETGSLPDSEKVGKIISWFCKG---------GKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQED------ 316 (540)
Q Consensus 253 ~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~------ 316 (540)
+.|++.++. .|+...+..+...|... |++++|...|++..+.. |+ ...|..+-..+.. .
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~-~~~~~~~ 232 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLS-LYFNTGQ 232 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-HHHhhcc
Confidence 999998876 46678888888888888 77788887777777654 33 3333332222221 2
Q ss_pred --chHHHHHHHHHHhHhccCC--CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 317 --ETVKLALDMLDDFSGEARK--YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 317 --~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
|++++|+..|++....... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554443210 133344444444445555555555554444431 11333444444444444444444
Q ss_pred HH
Q 042609 393 ME 394 (540)
Q Consensus 393 ~~ 394 (540)
.+
T Consensus 312 i~ 313 (474)
T 4abn_A 312 LE 313 (474)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-09 Score=93.93 Aligned_cols=166 Identities=12% Similarity=-0.079 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+..+|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44555555555555555555555555555443 3345555555555555555555555555555442 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.+...++++.|...+.+..... ..+...+..+-..+... |++++|++.|++..+... .+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 5555556666655555555433 11223333333333333 566666666665554432 23455666677777777777
Q ss_pred HHHHHHHHHHH
Q 042609 356 GAKTLLSKMIS 366 (540)
Q Consensus 356 ~a~~~~~~m~~ 366 (540)
+|...|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777665
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-09 Score=94.55 Aligned_cols=167 Identities=16% Similarity=0.081 Sum_probs=130.0
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
+...|..+...|.+.|++++|...|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34567788888888888888888888888763 336778888888888888888888888888766433 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWR 496 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 496 (540)
.+...++++.|...+.+..+.. +-+...+..+...|.+.|++++|++.|++..+.. +-+...|..+-..|. +.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~-~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYE-GKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHH-HCCCHH
Confidence 8888888888888888887764 3467788888888888899999999988888653 235566766666665 788889
Q ss_pred HHHHHHHHHHHC
Q 042609 497 TAEKLLEDMRLK 508 (540)
Q Consensus 497 ~A~~l~~~m~~~ 508 (540)
+|++.|++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999988888764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-10 Score=109.12 Aligned_cols=307 Identities=10% Similarity=0.035 Sum_probs=168.0
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH--HhcCChHHHH---------HHHHHHhhCCCCCCH-H-
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALF--SKLGKGKAAF---------EVFNKFGDYGCVANQ-E- 233 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~---------~~f~~m~~~g~~p~~-~- 233 (540)
.....+++++|..+++.+.+....-....++..|-.|+..- ...+..+.+. +.++.+.....+.+. .
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~ 100 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLK 100 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHH
Confidence 45667899999999998876543321223445555555431 1122222222 555555432111111 1
Q ss_pred --HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042609 234 --TYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVA 306 (540)
Q Consensus 234 --t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 306 (540)
.+......+...|++++|...+++..+... .++ ..++..+...|...|+++.|...+++..+...
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-------- 172 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ-------- 172 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--------
Confidence 122334456678889999888888876421 122 45677778888888888888888777654210
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----GPPP-GNAVFNSVIS 381 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~ 381 (540)
.. +.... ....+++.+...|...|++++|...|++..+. +..+ ...++..+..
T Consensus 173 -------~~-~~~~~--------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 173 -------NH-PLYSI--------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp -------TS-TTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------hC-CCchh--------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 00000 01223445555566666666666666555432 1111 1235666666
Q ss_pred HHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q 042609 382 AYSKAGDMTPAMEMLKLMRS-----RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH----SRLSPVTYHTLIRG 452 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~ 452 (540)
.|...|++++|...|++..+ .... ...++..+...|.+.|+.++|...+++..+.. -+.....+..+...
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776655 3222 25566667777777777777777777766531 11122345555556
Q ss_pred HHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 453 YCKLEE---FDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 453 ~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
|...|+ +++|+..+++ .+..|+...+...+..+..+.|++++|.+.|++..+
T Consensus 310 y~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666 5666666555 222333333333333333467777777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=111.27 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 213 GKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF-DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYT 291 (540)
Q Consensus 213 ~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (540)
++++++.+++..... +.+...+..+...+...|++ ++|.+.|++.++.. +.+...|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655432 34677777777777788888 88888888777653 2346777777777888888888888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 042609 292 LAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP 371 (540)
Q Consensus 292 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 371 (540)
+..+.. |+...+.. +...+...+. + ....+.|++++|...|++..+.. +.
T Consensus 162 ~al~~~--p~~~~~~~-lg~~~~~~~~--------------~------------~~~~~~g~~~~A~~~~~~al~~~-p~ 211 (474)
T 4abn_A 162 GALTHC--KNKVSLQN-LSMVLRQLQT--------------D------------SGDEHSRHVMDSVRQAKLAVQMD-VL 211 (474)
T ss_dssp HHHTTC--CCHHHHHH-HHHHHTTCCC--------------S------------CHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHhhC--CCHHHHHH-HHHHHHHhcc--------------C------------ChhhhhhhHHHHHHHHHHHHHhC-CC
Confidence 777644 55333222 2222233300 0 00001145555555555555432 22
Q ss_pred CHHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 372 GNAVFNSVISAYSKA--------GDMTPAMEMLKLMRSRGLK--PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 372 ~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
+...|..+..+|... |++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +-
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 290 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PA 290 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 455555566666555 6666666666666554210 255666666666666666666666666666543 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 442 SPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+...+..+...+...|++++|.+.+.++
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455666666666666666666655444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-09 Score=102.72 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=131.8
Q ss_pred chHHHHHHHHHHhHhccCC-C----CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--C---CC-CHHHHHHHHHHHHh
Q 042609 317 ETVKLALDMLDDFSGEARK-Y----AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG--P---PP-GNAVFNSVISAYSK 385 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~---~p-~~~~~~~li~~~~~ 385 (540)
|++++|+..|++....... + ...++..+...|...|+++.|...+++..+.. . .+ ...+++.+...|..
T Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~ 194 (378)
T 3q15_A 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194 (378)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 5555555555554432111 1 13347778888888999999988888876421 1 11 24578889999999
Q ss_pred cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHh
Q 042609 386 AGDMTPAMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKK-----NHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li~~~~~ 455 (540)
.|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...+++..+ .. +....++..+...|.+
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCK 273 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHH
Confidence 99999999999887653 2111 245788899999999999999999999887 43 2336788999999999
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHhCCC---HHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMKDVGV---QPNVDEYNKLIQSLCLKALD---WRTAEKLLED 504 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~g~---~~~A~~l~~~ 504 (540)
.|++++|...+++..+..- .|........+..+....|+ +.+|+.++++
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999874211 23333333444444547777 7777777766
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.2e-09 Score=101.31 Aligned_cols=300 Identities=11% Similarity=-0.016 Sum_probs=173.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHH
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQE----TYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVG 271 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~ 271 (540)
......+...|++++|+..+++.....-..+.. +++.+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556777777777777765543112221 344555566667777777777776654210 011 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCC----Cccc
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREK----KMY--PPQS-VVAFLISSLCQEDETVKLALDMLDDFSGEARKY----AIKP 340 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~ 340 (540)
.+...+...|++++|...+++..+. +.. |... .+..+-..+... |++++|...+++........ ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5666677777777777777766532 111 2222 222233334444 77777777777665432211 1234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFN----SVISAYSKAGDMTPAMEMLKLMRSRGLKP---DVYTY 411 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~ 411 (540)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66677777888888888888888764311111 11111 23344678888888888888776543211 13356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKN----HSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 486 (540)
..+...+...|+.++|...+++.... |..++. ..+..+...+...|+.++|...+++..... +. .-.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 67777888889999988888877543 222222 356667778888899999998888876421 00 11122
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 487 SLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 487 ~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.+. ..| +....+++.+.....
T Consensus 331 ~~~-~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFV-IEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHH-TTH--HHHHHHHHHHHHTTC
T ss_pred HHH-Hcc--HHHHHHHHHHHhCCC
Confidence 233 344 566667777766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-09 Score=107.38 Aligned_cols=306 Identities=11% Similarity=0.047 Sum_probs=199.3
Q ss_pred ChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 173 GKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKA---AFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 173 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
+.++|...|++..+.+ +...+..|...|...+..++ +.+.+......| +...+..+...|...+.++
T Consensus 89 ~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG-------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHHHHHHHHHHHHHTT-------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 5566777777666533 22366666666666554433 344444444433 2345555666666666544
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----chHHHH
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGG---KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQED----ETVKLA 322 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~~a 322 (540)
.+......+.+.-...+...+..|..+|.+.| +.++|.+.|+...+.|. ++...+. .+..++... ++.++|
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~-~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVD-SVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHH-HHHHHHTCGGGSSCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHH-HHHHHHhCCCCCCCCHHHH
Confidence 44443333322211223337888999999999 99999999999998882 3333222 233334442 589999
Q ss_pred HHHHHHhHhccCCCCcccHHHHHHH-H--HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHH
Q 042609 323 LDMLDDFSGEARKYAIKPFSSVIRS-L--CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG-----DMTPAME 394 (540)
Q Consensus 323 ~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~ 394 (540)
+..|+... .| +...+..+... + ...++.++|...|++..+.| +...+..|-..|. .| ++++|..
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999987 43 45566677666 4 46899999999999999876 6677777877777 55 9999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 042609 395 MLKLMRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLL 466 (540)
Q Consensus 395 ~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 466 (540)
.|++.. . -+...+..|-..|.. ..+.++|...|++..+.| +......|...|.. ..+.++|...|
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999888 4 366777777777776 449999999999999987 34455666677764 45889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 467 NEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 467 ~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
+...+.|.. +.......+.... ..++.++|.++.++-.+
T Consensus 382 ~~A~~~g~~-~a~~~l~~l~~~~-~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQDTP-EANDLATQLEAPL-TPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCCH-HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH-HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 988887642 2222222221111 22355666666665544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-08 Score=98.81 Aligned_cols=270 Identities=11% Similarity=-0.024 Sum_probs=185.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHH
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSE----KVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQS----VVA 306 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~ 306 (540)
......+...|++++|...+++.+......+.. +++.+...+...|++++|...+++...... ..+.. .+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334456678899999999999988764323332 566777889999999999999998764211 11221 122
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhccC----C--C-CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----CCHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEAR----K--Y-AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP----PGNAV 375 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~----~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~ 375 (540)
.+-..+... |++++|...+++...... . | ....+..+...+...|++++|...+++....... ....+
T Consensus 98 ~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 333444454 999999999998765321 1 1 1234566778889999999999999998754221 12356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYT----GLMSGYANGGQMEEACEILNEAKKNHSRL---SPVTY 446 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~----~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~ 446 (540)
+..+...+...|++++|...+++.......++ ..... ..+..+...|+.++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888899999999999999998765311111 11111 23344779999999999999887653221 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKD----VGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
..+...+...|++++|...+++... .|..++.. .+..+-..+. ..|+.++|.+.+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW-QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 7888999999999999999998763 23222222 3444444444 78899999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-09 Score=91.33 Aligned_cols=163 Identities=15% Similarity=0.042 Sum_probs=120.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 5556667777788888888887776542 3356677777788888888888888888877653 2356777777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~ 500 (540)
.|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+. ..|++++|.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~-~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE-QMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH-HcCCHHHHHH
Confidence 888888888888877763 3466777888888888888888888888877553 235566666666665 7788888888
Q ss_pred HHHHHHHC
Q 042609 501 LLEDMRLK 508 (540)
Q Consensus 501 l~~~m~~~ 508 (540)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-09 Score=89.81 Aligned_cols=164 Identities=13% Similarity=-0.036 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666655432 3345556666666666666666666666655542 23455555666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
...|++++|.+.|+++.+.. ..+...+..+...+... |++++|...+++..... ..+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666655543 22334444444444444 66666666666655543 22345566666667777777777
Q ss_pred HHHHHHHHH
Q 042609 358 KTLLSKMIS 366 (540)
Q Consensus 358 ~~~~~~m~~ 366 (540)
...+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-07 Score=93.96 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=121.7
Q ss_pred cccHHHHHHHHHcCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCC
Q 042609 338 IKPFSSVIRSLCRMKDVHGAK-TLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG---------LKPD 407 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~ 407 (540)
...|...+..+.+.|+.++|. .+|++.... ++.+...|-..+...-+.|++++|.++|+.+.+.. -.|+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 344555555566677888886 888888764 44566667778888888899999999998887531 0132
Q ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 042609 408 ------------VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL-EEFDCALKLLNEMKDVGV 474 (540)
Q Consensus 408 ------------~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 474 (540)
...|...+....+.|.++.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 2357777777778888999999999988761122334444333333344 4588999999988865 2
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 475 QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 475 ~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.-+...|...+.-.. ..|+.+.|..+|++.......++ ..-.+...+.+++
T Consensus 501 p~~~~~w~~y~~fe~-~~~~~~~AR~lferal~~~~~~~-~~~~lw~~~~~fE 551 (679)
T 4e6h_A 501 ATDGEYINKYLDFLI-YVNEESQVKSLFESSIDKISDSH-LLKMIFQKVIFFE 551 (679)
T ss_dssp TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHTTTSSSTT-HHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHH
Confidence 334555556666443 66788999999998887654321 1223444444444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-09 Score=99.78 Aligned_cols=159 Identities=18% Similarity=0.104 Sum_probs=105.2
Q ss_pred hcChhhHHHHHHHHHHhcccC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHH
Q 042609 171 SVGKKEVYALWDIVKEIGEKE---KGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY------GC-VANQETYYFTIE 240 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------g~-~p~~~t~~~ll~ 240 (540)
.|+.++|...|++..+...+. .......+|..+...|...|++++|+..|++..+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 355556666666555433211 00124678999999999999999999999998653 21 234567888999
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETG-------SLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK------KMYPP-QSVVA 306 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~ 306 (540)
.+...|++++|...+++.++.. .+....++..+...|...|++++|...|+++.+. +..|. ...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999887651 1223567788888999999999999998887653 11121 12223
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFS 330 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~ 330 (540)
.+-..+... |++++|...+++..
T Consensus 174 ~la~~~~~~-g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQ-GKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHH
Confidence 333333333 55555555555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-09 Score=100.75 Aligned_cols=228 Identities=12% Similarity=0.008 Sum_probs=140.0
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc------C-CCCcccHH
Q 042609 277 FCKGGKAKEAHVVYTLAREK-----K-MYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEA------R-KYAIKPFS 342 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~------~-~~~~~~~~ 342 (540)
....|++++|...|++..+. + ..|. ...+..+-..+... |++++|+..+++..... . .....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34567777777777766542 1 1122 33344455555555 88999998888876541 1 22344578
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISE------GP-PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR------GLKP-DV 408 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~ 408 (540)
.+...|...|++++|...+++.... .. +....++..+...|...|++++|...|++..+. +-.| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 8888888889999998888887754 11 223557778888888889999998888887654 1122 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHCCC
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKN-------HSRL-SPVTYHTLIRGYCKLEEFDCA------LKLLNEMKDVGV 474 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~~~A------~~~~~~m~~~g~ 474 (540)
.++..+...|...|++++|..+++++.+. ...+ ....|..+...+...+....+ ...++.... .
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 247 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--D 247 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--C
Confidence 67778888888889999998888887763 1112 223333333333333332222 222221111 1
Q ss_pred CCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 475 QPN-VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 475 ~p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.|+ ...+..+...|. +.|++++|.+++++..+.
T Consensus 248 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYR-RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 122 345556666655 889999999999988753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-08 Score=108.36 Aligned_cols=163 Identities=13% Similarity=0.067 Sum_probs=140.2
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
..|+.+...+.+.|++++|...|++..+..+. +..+|+.+...|.+.|++++|++.|++..+.. +-+..+|..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35677788889999999999999999998876 88999999999999999999999999998865 4568899999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCc
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDE 317 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 317 (540)
..++.+.|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|+..|++..+.+ |+ ...+..+...+... |
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~-g 159 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIV-C 159 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhc-c
Confidence 999999999999999999998864 3467899999999999999999999999999865 54 45566666666665 8
Q ss_pred hHHHHHHHHHHhHh
Q 042609 318 TVKLALDMLDDFSG 331 (540)
Q Consensus 318 ~~~~a~~~~~~m~~ 331 (540)
++++|.+.+++..+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=107.80 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=116.9
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
..+|+.+...|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3457777777778888888888888777653 225667777777888888888888888777765322 46677777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRT 497 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 497 (540)
|.+.|++++|.+.|++.++.. +-+...|+.+...|.+.|++++|++.|++.++... -+...|..+...|. ..|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~-~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQ-IVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH-HTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHH-hcccHHH
Confidence 888888888888888777753 23567777888888888888888888888776421 14556666666654 6777777
Q ss_pred HHHHHHHHHH
Q 042609 498 AEKLLEDMRL 507 (540)
Q Consensus 498 A~~l~~~m~~ 507 (540)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=9.8e-08 Score=89.08 Aligned_cols=243 Identities=11% Similarity=0.048 Sum_probs=108.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
+-..-.|++..++.-..++.. ......-..+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 344457777777774333321 12223344455777777766531 11123332333332222 211
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccC-CCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEAR-KYAIKPFSSVIRSLCRMKDVHGAKTLLSK 363 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (540)
|...|++..+.+ .++...+..+-..+... |++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555444333 23333333333333333 555555555555433322 11333455555555555566666665555
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 364 MISEGPPP-----GNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 364 m~~~g~~p-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
|.+. .| +..+...|..++.. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5542 33 23333334433221 22555555555555444 233222233333555555555555555544
Q ss_pred HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 435 KKNH---------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 435 ~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.. -+-|+.+...+|..+...|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3310 01233444344444444444 555555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.8e-08 Score=79.09 Aligned_cols=130 Identities=20% Similarity=0.149 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|..+|+.+.+..+. +...|..+...+...|++++|+..|+++...+ +.+...+..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 344555667778888888888887776553 67778888888888888888888888887654 446677777778
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.+...|++++|.++++.+.+.. +.+..++..+...+.+.|++++|...|+++...+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888877653 3456677777788888888888888887776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-08 Score=78.31 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
|..+...|...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44455555556666666666665554422 244555555556666666666666666655543 2345555666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.|++++|.++++++.+.. +.+...+..+...+. +.|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HHccHHHHHHHHHHHHcc
Confidence 666666666666665432 123445555555554 566666666666666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-07 Score=85.31 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 380 (540)
+...+...-..+... |++++|+..|++.......++...+..+..++...|++++|...|++..+... .+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 345555555566665 89999999999988876545667777788888999999999999999887632 3566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDV-------YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS---PVTYHTLI 450 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 450 (540)
..|...|++++|...|++..+.... +. ..|..+-..+...|++++|...|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999988876321 34 45777777888899999999999998886 354 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 451 RGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
..|...| ..+++++...+ ..+...|...... ..+.+++|+..+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKAK---ADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcC
Confidence 7775544 44556655443 2345556555532 4457899999999998864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-07 Score=85.33 Aligned_cols=206 Identities=14% Similarity=0.050 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHH
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSV 344 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 344 (540)
.|...+......+.+.|++++|...|++..+....++...+..+-..+... |++++|+..|++....... +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 467888889999999999999999999999877436677776665566665 9999999999999876433 55678899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHH
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPPGN-------AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD---VYTYTGL 414 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~l 414 (540)
...|...|++++|...+++..+... .+. ..|..+-..+...|++++|+..|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 9999999999999999999987532 244 45777888899999999999999999876 455 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 415 MSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 415 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
...|... +..+++++...+ ..+...|..... ...+.+++|...|++..+. .|+......++
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 7777554 444566666554 334555554443 3456789999999999875 45554444444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-06 Score=81.17 Aligned_cols=244 Identities=8% Similarity=-0.041 Sum_probs=164.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
+-..-.|.+..++.- ..+.....+...-.-+.++|...|+.+.. ..-.|.... -.++..|... +
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a-~~~la~~~~~-~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKV-LDLYVQFLDT-K-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHH-HHHHHHHHTT-T--
T ss_pred HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHH-HHHHHHHhcc-c--
Confidence 334456787777662 22222222233334455778877776532 111233222 2333344432 2
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
|+..|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..|.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888877654 34455566888899999999999999999877654 23677888899999999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 399 MRSRGLKP-----DVYTYTGLMSGYA--NGG--QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 399 m~~~g~~p-----~~~t~~~ll~~~~--~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
|.+. .| +..+...|..++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9876 56 3666777777743 334 899999999999876 466444455555899999999999999977
Q ss_pred HHC-----CC----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 470 KDV-----GV----QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 470 ~~~-----g~----~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.+. .. +-|..+...+|.... ..|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~-~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLAL-MQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHH-HTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHH-HhCh--HHHHHHHHHHHhC
Confidence 642 00 235555635543333 5676 8999999999864
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-07 Score=88.28 Aligned_cols=135 Identities=12% Similarity=-0.057 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDY----GCVA-NQET 234 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~p-~~~t 234 (540)
|......+...|++++|...|++..+...+.+..++ ..+|+.+...|...|++++|+..|++..+. |-.. -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445556667777777777766665433211111 456777777777777777777777766442 1000 0234
Q ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 235 YYFTIEALSRR-KIFDWAWSVCEKMIETGSL-PD----SEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 235 ~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
++.+...|... |++++|...|++.++.... .+ ..+++.+...|.+.|++++|...|++..+
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555554 6666666666555442100 01 23445555555555555555555555554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-07 Score=88.03 Aligned_cols=200 Identities=18% Similarity=0.105 Sum_probs=113.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDY----GCVAN-QETYYFTIEALSRRKIFDWAWSVCEKMIETGSL-PD----SEKVGKI 273 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 273 (540)
...|...|++++|++.|++..+. |-+++ ..+|+.+..+|.+.|++++|...+++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888887776442 21222 456777777777888888887777776553100 01 2355666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCC
Q 042609 274 ISWFCKG-GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMK 352 (540)
Q Consensus 274 i~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 352 (540)
...|... |++++|...|++..+.. | .. ++... ...++..+...+.+.|
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~--~-------------~~-~~~~~---------------~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWY--A-------------QD-QSVAL---------------SNKCFIKCADLKALDG 172 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH--H-------------HT-TCHHH---------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHH--H-------------hC-CChHH---------------HHHHHHHHHHHHHHhC
Confidence 6666664 67777666666554311 0 00 00000 0123556666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH-
Q 042609 353 DVHGAKTLLSKMISEGPPPGN------AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD------VYTYTGLMSGYA- 419 (540)
Q Consensus 353 ~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~- 419 (540)
++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+ ...+..++.+|.
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHc
Confidence 777777777777664332221 14555666677777777777777776543 222 112344555554
Q ss_pred -hcCCHHHHHHHHHHHHH
Q 042609 420 -NGGQMEEACEILNEAKK 436 (540)
Q Consensus 420 -~~g~~~~A~~~~~~m~~ 436 (540)
..+++++|...|+.+..
T Consensus 251 ~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TCTTTHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHhccCCc
Confidence 34567777777766544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-05 Score=84.44 Aligned_cols=343 Identities=12% Similarity=0.043 Sum_probs=228.7
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhCC-CCCCH
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK---GKAAFEVFNKFGDYG-CVANQ 232 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~g-~~p~~ 232 (540)
+...+..++...-+.+.++.++.+|+.+....+. +...|...+..-.+.|+ ++.+.++|++..... ..|+.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-----~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-----MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 4556778888888888999999999999987765 88899999999889998 999999999998753 24888
Q ss_pred HHHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIF--------DWAWSVCEKMIE-TGS-LP-DSEKVGKIISWFCK---------GGKAKEAHVVYTL 292 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 292 (540)
..|..-+....+.++. +.+.++|+..+. .|. .+ +...|...+..... .++++.+.++|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888877766665543 334577777654 365 45 45788888876542 3457888999998
Q ss_pred HHHcCCCCCHHHHHH---HHHHHHhCC---------chHHHHHHHHHHhHhc--cCC---CC------------------
Q 042609 293 AREKKMYPPQSVVAF---LISSLCQED---------ETVKLALDMLDDFSGE--ARK---YA------------------ 337 (540)
Q Consensus 293 m~~~~~~p~~~~~~~---ll~~~~~~~---------~~~~~a~~~~~~m~~~--~~~---~~------------------ 337 (540)
+.......-..+|.. +...+-... ..++.|...+.++... ++. |.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 875321112334432 222221100 1122334444433211 111 00
Q ss_pred --cccHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCC
Q 042609 338 --IKPFSSVIRSLCRMK-------DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAM-EMLKLMRSRGLKPD 407 (540)
Q Consensus 338 --~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~ 407 (540)
...|...+.---..+ ..+.+..+|++++.. ++-+...|-..+.-+.+.|+.++|. .+|+..... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 012444443333322 123456778888765 4557778888888888899999996 999998864 4446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKNH---------SRLS------------PVTYHTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~ 466 (540)
...|-..+...-+.|++++|.++|+.+.+.. -.|+ ...|...++...+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677888888889999999999999988641 0132 346888888888899999999999
Q ss_pred HHHHHC-C-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 467 NEMKDV-G-VQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 467 ~~m~~~-g-~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.+.++. + ..+......+.+.- ...++.+.|.++|+..++.
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~--~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEY--HISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHH--TTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHH
Confidence 999875 2 22333333333321 1245689999999999876
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-07 Score=86.67 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CC-CHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---QETYYFTIEALSRRKIFDWAWSVCEKMIETGS-LP-DSEKV 270 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~ 270 (540)
+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..++.+.|++++|...|+..++... .| ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 67778888888889999999999999998754 223 67788888889999999999999999887632 11 24556
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 271 GKIISWFCK--------GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 271 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
..+..++.+ .|++++|...|+++.+.. |+..... .+...+...... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~--------------~a~~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVD--------------DATQKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHH--------------HHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHH--------------HHHHHHHHHHHH----HHHHHH
Confidence 677777777 888888888888877654 3221111 010000000000 001144
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHC
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPP--GNAVFNSVISAYSKA----------GDMTPAMEMLKLMRSR 402 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 402 (540)
.+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 55666777777777777777776542221 233555556666654 6666666666666654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-06 Score=78.63 Aligned_cols=180 Identities=11% Similarity=0.000 Sum_probs=135.6
Q ss_pred HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 042609 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG----DMTPAMEML 396 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 396 (540)
+|+..|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666554 56667778888888889999999999888765 56677777777777 6 889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSR-LSPVTYHTLIRGYCK----LEEFDCALKLLN 467 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 467 (540)
++..+.| +...+..|-..|.. .++.++|...|++..+.|.. -++..+..|...|.. .++.++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9888764 66677777777776 78999999999999887621 026788888888888 788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCCCC
Q 042609 468 EMKDVGVQPNVDEYNKLIQSLCLKAL-----DWRTAEKLLEDMRLKGLHL 512 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~~ll~~~~~~~g-----~~~~A~~l~~~m~~~g~~p 512 (540)
+..+.+ .+...+..|-..|....| ++++|.++|++..+.|...
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 998762 234455556555553324 8999999999998887543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.9e-07 Score=79.60 Aligned_cols=172 Identities=12% Similarity=0.055 Sum_probs=110.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNS----------------VISAYSKAGDMTPAMEMLKLMRSRGLKPDVY 409 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 409 (540)
..+...|++++|...|++..+..+ -+...|.. +..+|.+.|++++|...|++..+.... +..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHH
Confidence 344455666666666666554321 12333444 778888999999999999888876432 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHH--HHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE--FDCALKLLNEMKDVGVQPNVDEY--NKLI 485 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~--~~ll 485 (540)
.|..+...|...|++++|...|++..+.. +-+...|..+...|...|+ .+.+...++... .|+...+ ...-
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g 164 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHH
Confidence 88888889999999999999999988864 3467788888888766554 344555555554 3443332 2222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.++. ..|++++|...|++.++. .|+......+.-+.+++
T Consensus 165 ~~~~-~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~i~~~~ 203 (208)
T 3urz_A 165 LSKL-FTTRYEKARNSLQKVILR--FPSTEAQKTLDKILRIE 203 (208)
T ss_dssp HHHH-HHHTHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHH
T ss_pred HHHH-HccCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 2333 567899999999998864 56655444444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.5e-07 Score=78.70 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=60.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC-
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQE- 315 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~- 315 (540)
+..++.+.|++++|...|++.++.. +-+...+..+..+|...|++++|...|++..+.+ |+ ...+..+-..++..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 5556666666666666666666543 2345566666666666666666666666666544 33 23333333332222
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
.+....+...++.... ..|....+.....++...|++++|...|++..+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0122233333333221 111111122233334445666666666666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-06 Score=82.76 Aligned_cols=229 Identities=11% Similarity=0.000 Sum_probs=136.7
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
.|++++|..++++..+.... . .+...+++++|...|++. ...|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHH
Confidence 46677888888877764432 1 011147778888777764 345667788888
Q ss_pred HHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 251 AWSVCEKMIETG----SLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 251 a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|...|.+..+.. -.. -..+|+.+...|.+.|++++|...|++..+.. .. .|+...+.
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~-~g~~~~~a-- 116 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY---------------VE-NGTPDTAA-- 116 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------------HT-TTCHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------------HH-cCCHHHHH--
Confidence 888887765531 100 13467777778888888888888887765310 11 13222211
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-----GNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
.++..+...|.. |++++|...|++..+..... ...+++.+...|.+.|++++|+..|++..
T Consensus 117 -------------~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 117 -------------MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp -------------HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 224445555656 77777777777665421100 13466777778888888888888887765
Q ss_pred HC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 042609 401 SR----GLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS------PVTYHTLIRGYCKLEEFDCALK 464 (540)
Q Consensus 401 ~~----g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~ 464 (540)
+. +..+. ...+..+..++...|++++|...|++.. .. |+ ......++.+| ..|+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 42 11111 2255666666777788888888888877 42 21 12344445544 4566655555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=98.51 Aligned_cols=166 Identities=13% Similarity=0.003 Sum_probs=126.0
Q ss_pred CchHHHHHHHHHHhH--------hccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 316 DETVKLALDMLDDFS--------GEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG 387 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 387 (540)
.|++++|++.+++.. .. ...+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence 388888988888877 32 12345567778888888899999999998888753 336778888888888899
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
++++|...|++..+.... +...|..+..+|.+.|++++ ...|++..+.. +-+...|..+..+|.+.|++++|.+.|+
T Consensus 482 ~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999888776322 56778888888888899888 88888888764 3466788888888999999999999988
Q ss_pred HHHHCCCCCC-HHHHHHHHHHH
Q 042609 468 EMKDVGVQPN-VDEYNKLIQSL 488 (540)
Q Consensus 468 ~m~~~g~~p~-~~~~~~ll~~~ 488 (540)
+..+. .|+ ...+..+..++
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTL 578 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHT
T ss_pred hhccc--CcccHHHHHHHHHHH
Confidence 88764 455 34454444444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-05 Score=73.61 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=145.7
Q ss_pred HhhcCh-hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---
Q 042609 169 CSSVGK-KEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG--KGKAAFEVFNKFGDYGCVANQETYYFTIEAL--- 242 (540)
Q Consensus 169 ~~~~~~-~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~--- 242 (540)
.+.+.+ ++|..+++.+..+.+. +..+||.--..+...| ++++++++++.+.... +-+..+|+.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 344444 5799999999998887 8889999998898888 9999999999998765 45666676655555
Q ss_pred -HhC---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042609 243 -SRR---KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK--EAHVVYTLAREKKMYPPQSVVAFLISSLCQED 316 (540)
Q Consensus 243 -~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 316 (540)
... +++++++.+++.+.+.. +-+-.+|+.-.-.+.+.|.++ ++.+.++.+.+.+ .-+...|+.--..+...
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l- 193 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSK- 193 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSS-
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc-
Confidence 455 78889999999998864 457777877777777778777 8888888888766 33455555433222222
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP-AMEM 395 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~ 395 (540)
+.. . ....++++++.++++.... +-|...|+-+-..+.+.|+... +..+
T Consensus 194 ~~~----------------~-------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~ 243 (306)
T 3dra_A 194 KHL----------------A-------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEF 243 (306)
T ss_dssp GGG----------------C-------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHH
T ss_pred ccc----------------c-------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHH
Confidence 220 0 0001445555555555442 2355555555555555555333 3344
Q ss_pred HHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 396 LKLMRSRG--LKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 396 ~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 244 ~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 244 SLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44443321 122555666666666666666666666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-06 Score=79.08 Aligned_cols=164 Identities=12% Similarity=0.011 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC-HHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG---NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD-VYTYTGLM 415 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll 415 (540)
+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++..+... .|. ...+..+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 333444444555555555555555443211 1 33444455555555555555555555544311 111 23344444
Q ss_pred HHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHH-----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 416 SGYAN--------GGQMEEACEILNEAKKNHSRLS-PVT-----------------YHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 416 ~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~~-----------------~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
.++.. .|++++|...|+++.+.. |+ ... +..+...|.+.|++++|...|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44444 555555555555555432 11 111 255677888899999999999988
Q ss_pred HHCCCCCC----HHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHCCC
Q 042609 470 KDVGVQPN----VDEYNKLIQSLCLKA----------LDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 470 ~~~g~~p~----~~~~~~ll~~~~~~~----------g~~~~A~~l~~~m~~~g~ 510 (540)
.+.. |+ ...+..+..+|. .. |++++|.+.++++.+...
T Consensus 175 l~~~--p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 175 FDAY--PDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHC--TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHC--CCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 8642 33 344555555554 33 788999999999887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.6e-07 Score=85.59 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHhHhccCCC-----CcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 042609 317 ETVKLALDMLDDFSGEARKY-----AIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----GPPP-GNAVFNSVISAYSKA 386 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~ 386 (540)
|++++|...|.+........ ...+|+.+...|.+.|++++|...|++..+. |-.. -..+++.+...|..
T Consensus 50 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 66666666665544321110 0223555556666666666666666655432 1100 12345555555555
Q ss_pred CChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhc
Q 042609 387 GDMTPAMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKN----HSRLS-PVTYHTLIRGYCKL 456 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~ 456 (540)
|++++|+..|++..+. |-.. ...++..+...|.+.|++++|...|++..+. +..+. ...+..+...+...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 6666666666655432 1000 0244555556666666666666666665542 11111 12444445555555
Q ss_pred CCHHHHHHHHHHHH
Q 042609 457 EEFDCALKLLNEMK 470 (540)
Q Consensus 457 g~~~~A~~~~~~m~ 470 (540)
|++++|...|++..
T Consensus 209 g~~~~A~~~~~~al 222 (307)
T 2ifu_A 209 ADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=78.77 Aligned_cols=134 Identities=13% Similarity=-0.021 Sum_probs=104.8
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (540)
...|++++|...+.......+. +...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 4457788888888877665554 56677788999999999999999999998865 55788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHH
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVV-YTLAREKKMYPPQSVVAFLISS 311 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~ll~~ 311 (540)
++|...|++.++.. +-+..++..+...|.+.|+.++|.+. +++..+.. |+......+...
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ 142 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 99999999998864 34678899999999999998876655 57777644 554443333333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-06 Score=90.64 Aligned_cols=153 Identities=12% Similarity=0.017 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
|++++|++.|++..+... .+...+..+...|.+.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 778889999888776532 245668888888889999999999999988763 336778888888999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL---EEFDCALKLLNEMKDVG 473 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 473 (540)
++..+... -+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...|... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88877632 257788888889999999999999999888764 34577888888888888 99999999999888653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-06 Score=77.45 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=96.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHhHhccCCCC--cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 042609 308 LISSLCQEDETVKLALDMLDDFSGEARKYA--IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGN--AVFNSVISAY 383 (540)
Q Consensus 308 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~ 383 (540)
+-..+... |++++|+..|+++........ ...+..+..+|.+.|++++|...|+++.+..+.... ..+-.+..++
T Consensus 10 ~a~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 10 TAQQKLQD-GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 33344444 677777777777665432111 134555666667777777777777776654322111 1233333333
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-----------------H
Q 042609 384 SKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-V-----------------T 445 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-----------------~ 445 (540)
.+.|.. .+ ..|..+-..+...|+.++|...|+++++.. |+. . .
T Consensus 89 ~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 89 MALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHH
Confidence 321100 00 000011111122345555555555555442 221 1 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV----DEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
...+...|.+.|++++|...|+++++. .|+. ..+..+..++. +.|++++|.+.++.+...+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCC
Confidence 134566788899999999999998865 3442 45666666665 88999999999998887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.9e-06 Score=73.74 Aligned_cols=175 Identities=14% Similarity=0.008 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC----ChhHH
Q 042609 176 EVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK----IFDWA 251 (540)
Q Consensus 176 ~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a 251 (540)
+|.+.|++..+.+ ++..+..|...|...+++++|++.|++..+.| +...+..+-..|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCC-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 4666676666542 67888888888888899999999998888765 56677777777776 5 78888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhC---CchHHH
Q 042609 252 WSVCEKMIETGSLPDSEKVGKIISWFCK----GGKAKEAHVVYTLAREKKMYPP---QSVVAFLISSLCQE---DETVKL 321 (540)
Q Consensus 252 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~---~~~~~~ 321 (540)
.+.|++..+.| +...+..|..+|.. .+++++|...|++..+.+ +. ...+..+-..+... .++.++
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 88888887764 56667777777766 677788888777776655 21 22333332233220 134555
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcC-C-----CHHHHHHHHHHHHHCC
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRM-K-----DVHGAKTLLSKMISEG 368 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 368 (540)
|+..|++..+.+ .+...+..+...|... | +.++|...|++..+.|
T Consensus 148 A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555555554431 1222344444444321 1 4555555555544443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=91.34 Aligned_cols=152 Identities=9% Similarity=-0.066 Sum_probs=88.6
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWA 251 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 251 (540)
|++++|...|++..+..+. +...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|
T Consensus 3 g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-----DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ------------------C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4556677777766665543 56777777777777777777777777776653 34566777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC---chHHHHHHHHH
Q 042609 252 WSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQED---ETVKLALDMLD 327 (540)
Q Consensus 252 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~---~~~~~a~~~~~ 327 (540)
.+.+++.++.. +.+...+..+..+|.+.|++++|.+.|++..+.. |+ ...+..+...+.. . |+.++|.+.++
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 77777776653 2356667777777777777777777777776654 33 3333333333333 3 67777777777
Q ss_pred HhHhcc
Q 042609 328 DFSGEA 333 (540)
Q Consensus 328 ~m~~~~ 333 (540)
+..+.+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 766543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-06 Score=76.08 Aligned_cols=158 Identities=6% Similarity=-0.060 Sum_probs=102.6
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA-L 242 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~-~ 242 (540)
....+...|++++|...|+...+..+. +...|..+...|...|++++|+..|++..... |+...+...... +
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS-----RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT-----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 334566778888899888887777765 78888888888889999999999998886653 354433332211 1
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP-PQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~ 321 (540)
...+....|...+++.++.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+... |+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL-GQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH-CSSCH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh-CCCCc
Confidence 22223344677777777653 2356777777778888888888888888777655222 123444444444444 66666
Q ss_pred HHHHHHHhH
Q 042609 322 ALDMLDDFS 330 (540)
Q Consensus 322 a~~~~~~m~ 330 (540)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-05 Score=71.39 Aligned_cols=236 Identities=9% Similarity=0.018 Sum_probs=153.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK--IFDWAWSVCEKMIETGSLPDSEKVGKIISWF----CKGGKA 283 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~g~~ 283 (540)
....++|++++++++..+ +-+...|+.--..+...+ ++++++++++.++.... -+..+|+.-...+ .+.+
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~-- 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNN-- 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTT--
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcc--
Confidence 344567888888887754 345556777666777777 77777777777776532 2333343322222 2220
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH--HHHHHH
Q 042609 284 KEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH--GAKTLL 361 (540)
Q Consensus 284 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~ 361 (540)
. .+++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.+
T Consensus 122 ------------------------------~-~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 122 ------------------------------N-DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ------------------------------T-CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ------------------------------c-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 0 03344444555554443222 3444555555555556665 888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 042609 362 SKMISEGPPPGNAVFNSVISAYSKAGD------MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEE-ACEILNEA 434 (540)
Q Consensus 362 ~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~m 434 (540)
+++.+..+ -|...|+.-...+.+.|. ++++++.++++...... |...|+-+-..+.+.|+... +..+..++
T Consensus 170 ~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 170 DKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 88887643 477777766666666666 89999999999887554 88899998888888887444 55566666
Q ss_pred HHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 435 KKNH--SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKL 484 (540)
Q Consensus 435 ~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 484 (540)
.+.+ -..+...+..+.+.|.+.|+.++|.++++.+.+. +.|...-|...
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDY 298 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHH
Confidence 5432 1347789999999999999999999999999863 24555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-06 Score=74.05 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 042609 231 NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSL-P-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS----V 304 (540)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~ 304 (540)
+...+..+...+.+.|++++|...|+.+++.... + ....+..+..+|.+.|++++|...|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4556666777888899999999999999875321 1 13567788889999999999999999988765 3321 1
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 305 VAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYS 384 (540)
Q Consensus 305 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 384 (540)
+..+-..+... +. .. ...|..+...+...|+.++|...|+++.+..+. +...+.+....
T Consensus 81 ~~~~g~~~~~~-~~-----~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l-- 139 (225)
T 2yhc_A 81 MYMRGLTNMAL-DD-----SA------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHH-HC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH--
T ss_pred HHHHHHHHHhh-hh-----hh------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH--
Confidence 21111122111 10 00 111233344455677888888888888765321 22222221110
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHH
Q 042609 385 KAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS----PVTYHTLIRGYCKLEEFD 460 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 460 (540)
+ .+...+. .....+...|.+.|++++|...|+++++.. |+ ...+..+..+|.+.|+.+
T Consensus 140 --~------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 140 --V------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp --H------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred --H------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcH
Confidence 0 0001110 112345567788888888888888888763 33 256777888888888888
Q ss_pred HHHHHHHHHHHCC
Q 042609 461 CALKLLNEMKDVG 473 (540)
Q Consensus 461 ~A~~~~~~m~~~g 473 (540)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 8888888887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-07 Score=96.62 Aligned_cols=171 Identities=11% Similarity=-0.079 Sum_probs=98.7
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 208 SKLGKGKAAFEVFNKFG--------DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK 279 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 279 (540)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|.+.+++.++.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666665 322 3445566666666666666666666666666543 2345566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHH
Q 042609 280 GGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAK 358 (540)
Q Consensus 280 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 358 (540)
.|++++|...|++..+.+ |+ ...+..+-..+... |++++ ++.|++..+.+.. +...|..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666544 32 23333333333343 66666 6666666554322 3455667777777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 042609 359 TLLSKMISEGPPPG-NAVFNSVISAYSKAG 387 (540)
Q Consensus 359 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 387 (540)
..|++..+. .|+ ...+..+..++...+
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 777776653 333 445555555654433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=82.29 Aligned_cols=162 Identities=9% Similarity=-0.020 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISS- 311 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 311 (540)
..+..+...+.+.|++++|...|++.++.. +-+...+..+...|.+.|++++|...++++.... |+..........
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 344444444555555555555555554432 1234445555555555555555555555443322 333222221111
Q ss_pred HHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChh
Q 042609 312 LCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-GNAVFNSVISAYSKAGDMT 390 (540)
Q Consensus 312 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 390 (540)
+... ++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..+...|...|+.+
T Consensus 195 l~~~-~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQ-AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhh-cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 1111 33444444444444332 1234445555555666666666666666665532211 1345556666666666666
Q ss_pred HHHHHHHHH
Q 042609 391 PAMEMLKLM 399 (540)
Q Consensus 391 ~A~~~~~~m 399 (540)
+|...|++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 665555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=7.6e-07 Score=74.70 Aligned_cols=84 Identities=13% Similarity=0.001 Sum_probs=37.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|...|++..+.. +-+...|..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444444444444444444444443211 34444444444455555555555555444432 123444444555555555
Q ss_pred CHHHHH
Q 042609 458 EFDCAL 463 (540)
Q Consensus 458 ~~~~A~ 463 (540)
++++|.
T Consensus 114 ~~~~aa 119 (150)
T 4ga2_A 114 VTDGRA 119 (150)
T ss_dssp SSSSHH
T ss_pred ChHHHH
Confidence 544433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.53 E-value=8e-07 Score=76.77 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG-YA 419 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~ 419 (540)
+......+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...|+..... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 4455566667777777777777765532 235566677777777777777777777766544 2333322221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCCHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP-NVDEYNKLIQSLCLKALDWRTA 498 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~g~~~~A 498 (540)
..+...+|...+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+. ..|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~-~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS-ALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH-HHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH-HhCCCCcH
Confidence 2222234566777766653 2346777777777777788888888877777653222 2345666665554 66677777
Q ss_pred HHHHHHHH
Q 042609 499 EKLLEDMR 506 (540)
Q Consensus 499 ~~l~~~m~ 506 (540)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-05 Score=73.77 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRS----R-GLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKN----HSRLS-P 443 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 443 (540)
+++.+...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 355555555555555555555555442 1 11111 225555666666666666666666655432 11112 4
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEE-FDCALKLLNEMK 470 (540)
Q Consensus 444 ~~~~~li~~~~~~g~-~~~A~~~~~~m~ 470 (540)
.+|..+...|.+.|+ +++|.+.|++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 566666666666663 466666666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-05 Score=73.09 Aligned_cols=164 Identities=13% Similarity=0.098 Sum_probs=121.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGP-PPGN----AVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYT 412 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~ 412 (540)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++..+... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999886422 2221 1334566677778899999999999987422 223 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHH
Q 042609 413 GLMSGYANGGQMEEACEILNEAKK----N-HSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKD----VGVQPN-VDEY 481 (540)
Q Consensus 413 ~ll~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 481 (540)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++..+ .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 11122 24788999999999999999999998763 333333 4556
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 042609 482 NKLIQSLCLKAL-DWRTAEKLLEDMRL 507 (540)
Q Consensus 482 ~~ll~~~~~~~g-~~~~A~~l~~~m~~ 507 (540)
..+-..+. +.| ++++|.+.+++...
T Consensus 240 ~~lg~~~~-~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLR-KLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCcHHHHHHHHHHHHH
Confidence 66665655 777 57999999988763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.8e-06 Score=78.95 Aligned_cols=164 Identities=11% Similarity=-0.003 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII- 274 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li- 274 (540)
+...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++..... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 45667777777888888888888888877654 446677777888888888888888888877654 34544333222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCC-CcccHHHHHHHHHcCC
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKY-AIKPFSSVIRSLCRMK 352 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g 352 (540)
..+.+.++.++|...|++..... |+ ...+..+-..+... |++++|+..|+++....... +...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23556677777788887777655 44 44444455555554 88888888888877754322 2456788888888888
Q ss_pred CHHHHHHHHHHHH
Q 042609 353 DVHGAKTLLSKMI 365 (540)
Q Consensus 353 ~~~~a~~~~~~m~ 365 (540)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.4e-06 Score=72.80 Aligned_cols=127 Identities=20% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
+..+...+...|++++|...|++. +.|+...+..+...|.+.|++++|...|++..+.. ..+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 334555666777777777777765 35566777777777777778888877777776653 2356677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 421 GGQMEEACEILNEAKKNHSR--------------L-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.|++++|...|++..+.... | ....+..+...|.+.|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 78888888877777764311 1 1266777777788888888888888887765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.48 E-value=9.4e-05 Score=74.97 Aligned_cols=314 Identities=11% Similarity=-0.040 Sum_probs=172.2
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHh----
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK-GKAAFEVFNKFGDY-GC-VANQETYYFTIEALSR---- 244 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~-g~-~p~~~t~~~ll~~~~~---- 244 (540)
++++.+..+|+..... .|++..|...+....+.+. .+....+|+..... |. +.+...|..-+..+..
T Consensus 28 ~~~e~~~~iferal~~------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~ 101 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDE 101 (493)
T ss_dssp TCHHHHHHHHHHHSTT------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSH
T ss_pred CCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhh
Confidence 7888899999876652 2689999999988877763 45677788887653 43 3466777777766542
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK-------------GGKAKEAHVVYTLAREKKMYPPQSVVAFLISS 311 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 311 (540)
.++++.+..+|+..+......-...|......-.. .+.+..|..+++.+...--..+...|...+.-
T Consensus 102 ~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 35688899999999874221112233333222111 12233344445444421100123355544433
Q ss_pred HHhCC-c-----hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 312 LCQED-E-----TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK 385 (540)
Q Consensus 312 ~~~~~-~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 385 (540)
--... + ..+.+..+|++..... ......|...+.-+.+.|+.+.|..++++.... +.+...+. .|+.
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 22210 1 1345677888877643 334666777888888999999999999999987 33332222 2222
Q ss_pred cCChhHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 386 AGDMTPAMEMLKLMRSRG---------LKP---DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
..+.++. ++.+.+.- ..+ ....|...+..+.+.+.++.|..+|++. +.. ..+...|...+..-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence 2222222 22222110 000 1234555555555667777777777777 321 22444443322222
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 454 CKLE-EFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 454 ~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
...| +.+.|..+|+...+.- .-+...+...++-. .+.|+.+.|..+|++.
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e-~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL-LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHS
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 2223 5777777777776532 11233344455433 3566777777776665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00028 Score=71.43 Aligned_cols=329 Identities=9% Similarity=-0.004 Sum_probs=197.6
Q ss_pred cccchHHHHHHHHHhhcC-hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHhhCCCCC
Q 042609 156 VTSGVVDALLKAICSSVG-KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFS----KLGKGKAAFEVFNKFGDYGCVA 230 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~-~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~f~~m~~~g~~p 230 (540)
++...+...++...+.+. .+....+|+.....-.. ...+...|...+..+. ..|+.+.+..+|++.+......
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~ 122 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS 122 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhh
Confidence 555667777776666553 35577888876664211 1137789999998765 3467889999999998742111
Q ss_pred CHHHHHHHHHHHHh-------------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHH
Q 042609 231 NQETYYFTIEALSR-------------RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG--K-----AKEAHVVY 290 (540)
Q Consensus 231 ~~~t~~~ll~~~~~-------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~A~~~~ 290 (540)
-...|..-...-.. ...+..|..+++.+...--..+...|...++.-...+ - .+.+..+|
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 12222222221111 1123344555555443200113446666655533321 1 34567889
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--
Q 042609 291 TLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-- 368 (540)
Q Consensus 291 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 368 (540)
+++.... .-....|...+.-+... |+.+.|..+|++.... |....... .|+...+.++. ++.+.+.-
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGI-GQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHh
Confidence 9988754 34466677666655555 9999999999999887 44433211 23222222222 22222110
Q ss_pred -------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 042609 369 -------P---PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTG--LMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 369 -------~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
. ......|...+..+.+.+..+.|..+|+.. +.. ..+...|.. .+.... .++.+.|..+|+...+
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHH
Confidence 0 011245666677777788899999999998 321 123444432 233222 3369999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 437 NHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
.. +-++..|...++...+.|+.+.|..+|+.+. .....|...+. +-...|+.+.+.++++++..
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~-fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE-YEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH-HHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHH
Confidence 53 2245667778888889999999999999973 25667777775 44477899999999988864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-05 Score=70.60 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
.+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|...+++..+.. +.+...|..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566778889999999999998774 5688999999999999999999999999998874 457789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 042609 455 KLEEFDCALKLLNEMKDVGVQ--------------PN-VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~--------------p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
..|++++|...|++..+.... |+ ...+..+-..+. +.|++++|.+.|++..+....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999875311 11 255666666665 889999999999999886543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.44 E-value=8.6e-06 Score=68.91 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++.++.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344444445555555555555555544432 2234444555555555555555555555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 042609 278 CKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~ 296 (540)
...|++++|...|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-06 Score=67.69 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567777778888888888888888877654 4567788888888888888888888888887764 3456778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 042609 277 FCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~ 297 (540)
|...|++++|.+.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 888888888888888877754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=4.3e-06 Score=70.01 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+.+.|++++|+..|++..... +-+...|..+..++...|++++|...|++.++.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 66788888889999999999999999998765 5578889999999999999999999999998874 345678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
+|.+.|++++|...|+...+.. |+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 9999999999999999988755 554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.3e-06 Score=72.04 Aligned_cols=121 Identities=7% Similarity=-0.054 Sum_probs=101.3
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhCCCh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA-LSRRKIF 248 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~-~~~~~~~ 248 (540)
..|++++|...++...+..+. +...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 457788899999988887765 88999999999999999999999999998764 4577788888888 7789998
Q ss_pred --hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 249 --DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 249 --~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
++|...++..++.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998874 3467888899999999999999999999998865
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-05 Score=64.08 Aligned_cols=99 Identities=23% Similarity=0.193 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|..+++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566666677777777777777777766543 3456666667777777777777777777766653 2455666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 042609 277 FCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~ 297 (540)
|...|++++|...|+++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 777777777777777766544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-05 Score=66.27 Aligned_cols=128 Identities=8% Similarity=-0.042 Sum_probs=101.3
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
..+..+...+...|++++|...|+...+..+. +..+|..+...+...|++++|+..|++..+.. +.+...+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 87 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34666777788889999999999999887765 78999999999999999999999999988764 4578889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG--KIISWFCKGGKAKEAHVVYTLA 293 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 293 (540)
..++...|++++|...+++..+... .+...+. .++..+.+.|++++|...+...
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999999999999987642 3444443 3333466667777777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-05 Score=65.32 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+......+.+.|++++|...|++..+..+. +..+|..+...|.+.|++++|+..|++..+.+ +.+...|..+..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 344566778899999999999999998876 89999999999999999999999999998865 567889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI 273 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 273 (540)
++...|++++|.+.|++.++.. +-+...+..|
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 9999999999999999999863 2344444444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.6e-05 Score=70.55 Aligned_cols=127 Identities=14% Similarity=0.056 Sum_probs=82.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH---C-CCCC--CHHHHH
Q 042609 344 VIRSLCRMKDVHGAKTLLSKMISEGP---PPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRS---R-GLKP--DVYTYT 412 (540)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~t~~ 412 (540)
+...+...|++++|...+++..+... .+. ..+|+.+...|...|++++|...|++..+ . +..+ ...+|.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 44455667777777777777664311 111 34677777778888888888888877652 2 1111 124677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042609 413 GLMSGYANGGQMEEACEILNEAKKNH----SRL-SPVTYHTLIRGYCKLEEFDCA-LKLLNEMK 470 (540)
Q Consensus 413 ~ll~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 470 (540)
.+...|.+.|++++|...+++..+.. ... -..+|..+...|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777888888888888887765431 111 156777778888888888888 66666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-06 Score=70.97 Aligned_cols=110 Identities=16% Similarity=0.062 Sum_probs=89.9
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 181 WDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 181 f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
|+.+.+..+. +...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++.+.
T Consensus 10 ~~~al~~~p~-----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 10 IAMLNEISSD-----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHTTCCHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHh-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444444443 67788888899999999999999999988764 55788888899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 261 TGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 261 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.. +.+...+..+..+|...|++++|...|+...+..
T Consensus 84 l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 84 MD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 64 3466788888999999999999999999887643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-05 Score=62.57 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
...+..+...+...|++++|.++|+++.+.. ..+..++..+...|.+.|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555666666666666666655442 1245555566666666666666666666665543 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 042609 453 YCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~ 472 (540)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=71.12 Aligned_cols=156 Identities=8% Similarity=-0.001 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 042609 350 RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~ 424 (540)
..|++++|.++++.+... ......++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1223445555555566666666666666555431 1111 234455555566666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHhCC
Q 042609 425 EEACEILNEAKKN----HSRL--SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-VQPNV----DEYNKLIQSLCLKAL 493 (540)
Q Consensus 425 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~~g 493 (540)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+.. -..+. .++..+-..+. ..|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ-QEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HCc
Confidence 6666666655442 1011 12345556666666666666666666654210 00111 11233333333 566
Q ss_pred CHHHHHHHHHHHHH
Q 042609 494 DWRTAEKLLEDMRL 507 (540)
Q Consensus 494 ~~~~A~~l~~~m~~ 507 (540)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66776666665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00034 Score=66.55 Aligned_cols=130 Identities=7% Similarity=-0.021 Sum_probs=95.3
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC-C-Ch
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG-KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR-K-IF 248 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~ 248 (540)
...++|.++++.+....++ +..+||.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++
T Consensus 68 e~se~AL~lt~~~L~~nP~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 4446799999999998887 8899999888888888 5999999999998765 56778888877777766 6 88
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHH
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK--------EAHVVYTLAREKKMYPPQSVVAFLI 309 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll 309 (540)
++++++++.+++.. +-|..+|+.-.-++.+.|.++ ++.+.++++.+.+ .-+...|+..-
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~ 208 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRW 208 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 89999999998764 356667765555554444444 6666666666654 23444554433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00013 Score=68.54 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=120.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--HHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG-----NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL---KPD--VYT 410 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 410 (540)
+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44566778889999999999988876532211 12234456677888999999999999875421 222 458
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKK---N-HSRL--SPVTYHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPN-VD 479 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 479 (540)
|+.+...|...|++++|...+++..+ . +-.+ ...+|..+...|.+.|++++|...+++..+. +.... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 89999999999999999999999873 2 1111 1268899999999999999999999987632 22222 45
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 042609 480 EYNKLIQSLCLKALDWRTA-EKLLEDMR 506 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A-~~l~~~m~ 506 (540)
+|..+-..|. +.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~-~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLR-KLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCcHHHHHHHHHHHH
Confidence 5666666665 88899999 77787765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-05 Score=63.30 Aligned_cols=98 Identities=22% Similarity=0.100 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3444555555555555555555555554432 2344445555555555555555555555554432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 042609 277 FCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~ 296 (540)
|.+.|++++|...|++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 55555555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=81.97 Aligned_cols=149 Identities=12% Similarity=0.059 Sum_probs=102.4
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---------------QETYY 236 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---------------~~t~~ 236 (540)
+++++|...|+...+..+. +...|+.+...|.+.|++++|+..|++..+.. +.+ ...|.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~-----~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE-----QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHH
Confidence 3444455555444333333 56788888888888999999999998887754 222 47788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQE 315 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 315 (540)
.+..++.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+.. |+ ...+..+-..+...
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888764 3467788888888888888888888888887754 43 33444444444443
Q ss_pred CchHHHH-HHHHHHhH
Q 042609 316 DETVKLA-LDMLDDFS 330 (540)
Q Consensus 316 ~~~~~~a-~~~~~~m~ 330 (540)
|+.+++ ..+|+.|.
T Consensus 278 -~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 278 -RRQLAREKKLYANMF 292 (336)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 666666 34555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00058 Score=64.93 Aligned_cols=253 Identities=10% Similarity=0.002 Sum_probs=136.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 042609 209 KLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK-IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG-G-KAKE 285 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 285 (540)
+.+..++|+++++++...+ +-+..+|+.--..+...+ .+++++++++.++... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 4455678999999998875 456677888877888888 5999999999999874 35667777766666665 6 7889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH--------HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC----
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK--------LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD---- 353 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---- 353 (540)
+..+++.+.+.+ .-+...|+.---.+... |.++ ++++.++++.+.... |..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 999999888765 33455555422211111 2222 555555555554322 44445444444444443
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 354 ---VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP--AMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 354 ---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
++++++.++++.... +-|...|+-+-..+.+.|+... -..+. ...|...+ . ...+..
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~-------------~~~~~~ 282 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-P-------------DIETVE 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------------
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---cccccccc-c-------------cchhHH
Confidence 344555555444432 2244444444444444333200 00000 00000000 0 011222
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 429 EILNEAKKNH-----SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 429 ~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
+...++...+ -.++......|++.|...|+.++|.++++.+.+. ..|-..-|....
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~ 343 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFR 343 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHH
Confidence 2222222111 1356677777778888888888888888877633 344444444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.2e-06 Score=74.74 Aligned_cols=185 Identities=8% Similarity=-0.064 Sum_probs=105.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhhCCCCCC-----------
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNEL-------IALFSKLGKGKAAFEVFNKFGDYGCVAN----------- 231 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~f~~m~~~g~~p~----------- 231 (540)
..++...|.+.|..+.+..+. ....|+.+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-----~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-----ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhChh-----hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCc
Confidence 468899999999999999887 88999988 5667777777777776666544 1221
Q ss_pred -----------HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 232 -----------QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 232 -----------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
....-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... .|
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~ 165 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WP 165 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CS
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cC
Confidence 1223334556667778888877777766543 4433555555567777777777777764322 11
Q ss_pred CHH---HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCC--cccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 301 PQS---VVAFLISSLCQEDETVKLALDMLDDFSGEARKYA--IKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 301 ~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
+.. ....++...+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 1122222222223555555555555442221122 11233344444455555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.1e-06 Score=71.42 Aligned_cols=121 Identities=11% Similarity=-0.083 Sum_probs=88.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCC-CCHHHHHHHHHHHHh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGD----YGCV-ANQETYYFTIEALSR 244 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~g~~-p~~~t~~~ll~~~~~ 244 (540)
..|++++|.+.++.+..... ....+++.+...|...|++++|+..|++..+ .|.. ....++..+...+..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPA-----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTT-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 46888899986655543211 2567899999999999999999999998865 2212 234567888888999
Q ss_pred CCChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIET----GSLP--DSEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
.|++++|...+++.++. +-.+ ....+..+...+...|++++|...+++..+
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999887654 2111 234577888888999999999998887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=67.12 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
.+...+.+.|++++|...|+.+.+..+. +...|..+...|...|++++|+..|++..+.. +-+...|..+..++
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFY-----NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 3444667889999999999999998876 89999999999999999999999999998865 45688899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSE 268 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~ 268 (540)
.+.|++++|...|++.++.. |+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999863 5553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-05 Score=75.12 Aligned_cols=133 Identities=14% Similarity=-0.001 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT----------VEILNELIALFSKLGKGKAAFEVFNKFGDYGCV 229 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~ 229 (540)
.+..+...+.+.|++++|...|+...+..+....... ..+|+.+...|.+.|++++|+..|++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 4566777888899999999999999988765100000 6899999999999999999999999998865 5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH-VVYTLAR 294 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~ 294 (540)
.+...|..+..++...|++++|...|++.++.. +.+...+..+..++.+.|+.++|. ..|+.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999874 346788889999999999999884 4566554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=64.20 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45667777777777777777777777766543 3356666667777777777777777777766653 235666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|.+.|++++|.+.|++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 7777777777777777766543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-05 Score=66.58 Aligned_cols=119 Identities=8% Similarity=0.038 Sum_probs=57.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 042609 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG-YCKLEEF--DCA 462 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~A 462 (540)
.|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+... |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555544432 1244455555555555555555555555555432 2244455555555 4455555 566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
...++++.+... -+...+..+...+. ..|++++|.+.+++..+.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAF-MQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhh
Confidence 666655554321 12333444443333 555666666666655554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.5e-05 Score=61.78 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
.+..+...+...|++++|...|++..... ..+...+..+...|...|++++|...+++..+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444444444555555555554444331 1134444444455555555555555555544432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042609 455 KLEEFDCALKLLNEMKD 471 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~ 471 (540)
..|++++|...|++..+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 55555555555555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-05 Score=71.21 Aligned_cols=189 Identities=10% Similarity=-0.001 Sum_probs=109.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhCCChhHHHHHHHHHHH------------CCCC-----
Q 042609 209 KLGKGKAAFEVFNKFGDYGCVANQETYYFT-------IEALSRRKIFDWAWSVCEKMIE------------TGSL----- 264 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l-------l~~~~~~~~~~~a~~~~~~m~~------------~g~~----- 264 (540)
..++...|.+.|.+..... +-....|..+ ...+.+.++..++...+..-++ .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5799999999999998765 4567778777 4555555555555555544443 1210
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCC--cc
Q 042609 265 ---PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYA--IK 339 (540)
Q Consensus 265 ---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~ 339 (540)
.-...+-.+...+...|++++|.++|+.+...+ |+......+-..+.+. +++++|+..|+...... .+. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccHHH
Confidence 002334456667778888888888887766544 4443222222233333 77777777776433211 010 12
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455566666667777777777776653322132 223444455566666777777766666655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-05 Score=74.00 Aligned_cols=191 Identities=8% Similarity=0.005 Sum_probs=126.8
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+...+..+. +...|..+...|.+.|++++|+..|++..+.. +-+...+..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445556777889999999999999988765 88999999999999999999999999998764 557888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
++...|++++|...|++..+.+.. +...+...+....+ ..++.. +........ +........+..+. . |+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~-~~~~~i~~~l~~l~-~-~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRI-HQESELHSYLTRLI-A-AERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCC-CCCCHHHHHHHHHH-H-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHH-hhhHHHHHHHHHHH-H-HHHH
Confidence 999999999999999998765310 00011111111111 111111 122222232 33333333444444 2 8899
Q ss_pred HHHHHHHHhHhccCCCCc-ccHHHHHHHHHcC-CCHHHHHHHHHHHHHC
Q 042609 321 LALDMLDDFSGEARKYAI-KPFSSVIRSLCRM-KDVHGAKTLLSKMISE 367 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 367 (540)
+|++.++...+. .|+. .....+-..+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988877654 3332 2233333344444 6688899999887653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=75.71 Aligned_cols=99 Identities=11% Similarity=-0.107 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56788899999999999999999999998764 4478889999999999999999999999998764 356788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 042609 276 WFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~ 296 (540)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999887754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=63.18 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
+...+..+...+.+.|++++|...|++..+... .+...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 344555556666666666666666666655421 245556666666666666666666666666543 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 042609 452 GYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.|.+.|++++|.+.|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-06 Score=73.11 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=86.0
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----------------QETY 235 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----------------~~t~ 235 (540)
+++++|.+.|+.-.+...+ ....|..+...+...|++++|+..|++..+.. +.+ ...|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQ-----SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----CCCSGGGCCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 4555565555533332222 45678888888889999999999999887643 112 2677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
..+..++.+.|++++|...++..++.. +.+...+..+..+|...|++++|...|++..+..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 888888888899999999998888763 3567788888888889999999999988887754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=66.16 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|+..++.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 55677778888889999999999999987764 4577888888888999999999999999988864 345677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|...|++++|...|+...+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999998877643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=71.07 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH---HHHHHHHHHHHhCCchHHHHHHHHHHhHhc----cCCCC-cccH
Q 042609 271 GKIISWFCKGGKAKEAHVVYTLAREKK-MYPPQ---SVVAFLISSLCQEDETVKLALDMLDDFSGE----ARKYA-IKPF 341 (540)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~ 341 (540)
..|...|.+.|++++|.+.+..+...- ..++. ......+..+....|..+++..+++..... +..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 445555666666666665555544311 01111 122233444444446666666666654431 11111 2235
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHH
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISE--GP--PP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----GLKPD--VYT 410 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t 410 (540)
..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..++++.... +..+. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 56667777777777777777766532 11 11 1345667777777777777777777665432 11111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
+..+...+...|++++|...|.+..+
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555566667777777777666543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.4e-05 Score=59.98 Aligned_cols=97 Identities=14% Similarity=-0.005 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4567777777778888888888888776654 4467777777778888888888888888877764 2456677777788
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~ 295 (540)
|...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888877665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-05 Score=65.17 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCL 490 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 490 (540)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++...... -+...+..+-.+|.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~- 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL- 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH-
Confidence 3344444445555555555555544432 22444445555555555555555555555443321 12233333333333
Q ss_pred hCCCHHHHHHHHHHHHH
Q 042609 491 KALDWRTAEKLLEDMRL 507 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~ 507 (540)
..|++++|.+.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.1e-05 Score=58.36 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34566777777777777777777777776643 3466677777777777777777777777776653 235666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|...|++++|...|++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 7777788888877777776543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-05 Score=61.14 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETG--SLPD----SEKV 270 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~ 270 (540)
...|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456667777777777777777777776653 4456667777777777777777777777766542 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 271 GKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
..+..++...|++++|.+.|++....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66777777788888888887776653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00017 Score=56.46 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+......+. +...|..+...|...|++++|+..+++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 445556777889999999999999887765 78999999999999999999999999998764 456888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
++...|++++|.+.++...+.+. .+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 99999999999999999987642 3444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.3e-05 Score=59.38 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+.+.|++++|...|+...+..+. +...|..+...|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 445556778889999999999999988775 88999999999999999999999999998865 456889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 042609 241 ALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~ 261 (540)
++...|++++|...|++.++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999998875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.1e-05 Score=60.39 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC----HHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG--CVAN----QET 234 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g--~~p~----~~t 234 (540)
+..+...+.+.|++++|...|++..+..+. +..+|+.+...|...|++++|++.|++..+.+ ..++ ..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 445667788899999999999999998876 89999999999999999999999999987632 1122 246
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK 272 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 272 (540)
|..+..++...|++++|.+.|++.+.. .||..+...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777888899999999999999998875 467655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00012 Score=61.89 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
...+..+...|.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...+++.++.. +-+...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 33445555555555555555555555554421 144555555555555555555555555555543 2234555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~ 470 (540)
|...|++++|...|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 555555555555555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.5e-05 Score=58.36 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLP--DSEKVGKIIS 275 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~ 275 (540)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344444455555555555555555554432 2334445555555555555555555555555442 12 3444555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHc
Q 042609 276 WFCKG-GKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~-g~~~~A~~~~~~m~~~ 296 (540)
+|.+. |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.6e-05 Score=61.87 Aligned_cols=92 Identities=11% Similarity=-0.056 Sum_probs=81.9
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+...+.+.|++++|...|+.+....+. +...|..+...|...|++++|+..|++..... +.+...+..+..++.
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHY-----DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344667889999999999999988776 89999999999999999999999999998865 557788889999999
Q ss_pred hCCChhHHHHHHHHHHHC
Q 042609 244 RRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~ 261 (540)
..|++++|...|+..++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00013 Score=59.39 Aligned_cols=99 Identities=11% Similarity=-0.107 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++..++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 67889999999999999999999999987764 4567888889999999999999999999988864 346778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 042609 276 WFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~ 296 (540)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999887754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.02 E-value=7.1e-05 Score=58.10 Aligned_cols=92 Identities=11% Similarity=-0.081 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL--SPVTYHTLIRGYC 454 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~ 454 (540)
..+...+.+.|++++|...|++..+... .+...|..+...|...|++++|...+++..+.. +. +...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 3333444444444444444444433311 133344444444444444444444444444432 11 2344444444444
Q ss_pred hc-CCHHHHHHHHHHHH
Q 042609 455 KL-EEFDCALKLLNEMK 470 (540)
Q Consensus 455 ~~-g~~~~A~~~~~~m~ 470 (540)
+. |++++|.+.+++..
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TCSSCSHHHHHHHHHHG
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 44 44444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5e-05 Score=60.90 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCC----HHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS--LPD----SEKVGK 272 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 272 (540)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444444444444444444444332 22344444444444444444444444444443311 111 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
+...|.+.|++++|...|+...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 45555555555555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00026 Score=58.18 Aligned_cols=99 Identities=16% Similarity=0.021 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
+...|..+...+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+++.++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 67889999999999999999999999998764 66 6788888899999999999999999988763 34678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.+..+|...|++++|...|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999988754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00015 Score=61.32 Aligned_cols=90 Identities=17% Similarity=0.001 Sum_probs=48.7
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+...|++++|...|+...+..+. +...|..+...|...|++++|+..|++..+.. +-+...|..+..++...
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3444555555555555555555443 45555555555555555555555555555443 23455555555555555
Q ss_pred CChhHHHHHHHHHHHC
Q 042609 246 KIFDWAWSVCEKMIET 261 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~ 261 (540)
|++++|...|++.++.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 5555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00019 Score=59.03 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD----VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYH 447 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 447 (540)
+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555556666666666666666666554 334 4555555666666666666666666665542 22455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+...|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00017 Score=58.62 Aligned_cols=96 Identities=16% Similarity=-0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...+++..+.. +.+...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 34444444455555555555555554444321 134444444444555555555555555444432 2234444444455
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~ 470 (540)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=7.1e-05 Score=65.66 Aligned_cols=130 Identities=9% Similarity=-0.096 Sum_probs=97.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-----------VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ 232 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~ 232 (540)
+...+...|++++|...|+...+..+....... ..+|..+...|...|++++|+..|++..+.. +.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 344567789999999999999887654211112 2789999999999999999999999998864 5678
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH-VVYTLARE 295 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 295 (540)
..+..+..++...|++++|...|++.++.. +.+..++..+..++...++.+++. ..|..+..
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998864 346777888888887777776666 44554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00021 Score=57.09 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV--QPN----VDEYNK 483 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 483 (540)
.|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554432 22444555555555555555555555555543210 111 334444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+...+. +.|++++|.+.|++..+.
T Consensus 85 la~~~~-~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYF-KEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHh
Confidence 444443 555666666666655554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=8.8e-05 Score=59.26 Aligned_cols=89 Identities=9% Similarity=-0.065 Sum_probs=56.5
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.+.+.|++++|...|+...+..+. +...|..+...+...|++++|+..|++..+.. +-+...+..+..++.+.|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 445566666777777666666554 66666666666777777777777776666543 334556666666666666
Q ss_pred ChhHHHHHHHHHHHC
Q 042609 247 IFDWAWSVCEKMIET 261 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~ 261 (540)
++++|...+++.++.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00052 Score=68.11 Aligned_cols=205 Identities=11% Similarity=0.021 Sum_probs=105.3
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLT------------VEILNELIALFSKLGKGKAAFEVFNKFGDY-GCVAN 231 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~~p~ 231 (540)
.+.+.+.|++++|.+.|..+.+..+....... ..++..|...|...|++++|.+.+.++... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34455667777777777766665543222110 123556666666667777776666665431 10111
Q ss_pred HH----HHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 232 QE----TYYFTIEALSRRKIFDWAWSVCEKMIET----GSLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 232 ~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
.. +.+.+-..+...|+++.|..++...... +..+ -..++..|...|...|++++|..+++++...-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--- 167 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK--- 167 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh---
Confidence 11 1122222223345556666555554331 1111 1334445555555555555555555543321000
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----GPPPG--NAVF 376 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~ 376 (540)
. + ........|..++..|...|++++|..++++.... +.++. ...+
T Consensus 168 ------------~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 168 ------------L-D---------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp ------------S-S---------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ------------c-c---------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 0 0 00001234667777788888888888888776532 11111 2345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
..+...+...|++++|...|.+..
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566666777888888887776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.86 E-value=3.6e-05 Score=77.40 Aligned_cols=143 Identities=11% Similarity=0.053 Sum_probs=94.4
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---------------QETYY 236 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---------------~~t~~ 236 (540)
+++++|...|+...+..+. ....|+.+...|.+.|++++|+..|++..+.. +.+ ...|.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~-----~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE-----QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHH
Confidence 3444555555544433333 56678888888899999999999998887643 122 47777
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQED 316 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 316 (540)
.+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. |+.......+..+....
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 88888888888888888888887764 3467778888888888888888888888877643 54433333333222222
Q ss_pred chHHHHH
Q 042609 317 ETVKLAL 323 (540)
Q Consensus 317 ~~~~~a~ 323 (540)
++.+++.
T Consensus 399 ~~~~~a~ 405 (457)
T 1kt0_A 399 KEHNERD 405 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0062 Score=57.53 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMK--DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD-MTPAMEM 395 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~ 395 (540)
+++++.+++.+.....+ +..+|+.-...+.+.+ .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56666666666654332 4455655555666666 3778888888887663 3467777766666667777 4778888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANG--------------GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL----- 456 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 456 (540)
++.+.+.... |...|+.....+.+. +.++++++.+.+.+... +-|...|+-+--.+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 8887776544 666676665555443 45778888888887764 44667776554444444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHC
Q 042609 457 ------EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC----LKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 457 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~g~~~~A~~l~~~m~~~ 508 (540)
+.++++++.++++.+. .|+. .|+.+-.++. ...|..+++...++++++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578899999998865 4554 3432221111 1356777888888888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.011 Score=55.87 Aligned_cols=131 Identities=11% Similarity=0.018 Sum_probs=95.3
Q ss_pred HhhcChh-hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 169 CSSVGKK-EVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK----------GKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 169 ~~~~~~~-~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
.+.|.+. +|..+++.+....++ +..+||.=-..+...+. +++++.+++.+.... +-+..+|+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3445554 688999999888776 77888866555544443 678888888887754 567788888
Q ss_pred HHHHHHhCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 042609 238 TIEALSRRK--IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK-AKEAHVVYTLAREKKMYPPQSVVAF 307 (540)
Q Consensus 238 ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ 307 (540)
-..++.+.+ .++++..+++.+.+.. +-|...|+.-.-++...|. ++++.+.++.+.+.+ .-+...|+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 777777777 4788888998888864 3567777777767777777 588888888888766 345556654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=58.13 Aligned_cols=97 Identities=10% Similarity=-0.135 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFC 278 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 278 (540)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35566777888999999999999988764 4578888888889999999999999999988864 246778888888899
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 042609 279 KGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~ 297 (540)
+.|++++|...|++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999998877643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00014 Score=60.57 Aligned_cols=130 Identities=14% Similarity=0.052 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYTGLMSGYANGGQMEEACEILNEAKKNHS-RLS----PVT 445 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~ 445 (540)
+..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+... ..+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444444445555555555444332200 001 12444455555555555555555555443210 001 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPN-VDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
+..+...|...|++++|...+++..+. +-.+. ...+..+-..+. ..|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 555555666666666666666555421 11111 122333333333 5566666666666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00055 Score=54.76 Aligned_cols=94 Identities=16% Similarity=0.072 Sum_probs=55.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQ---ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD---SEKVGKIIS 275 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~ 275 (540)
.+...+...|++++|+..|++..+.. +.+. ..+..+..++.+.|++++|...++..++... .+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 34445556666666666666665532 1122 3555566666666666666666666665431 12 455566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|.+.|++++|...|+.+.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6777777777777777666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00025 Score=59.01 Aligned_cols=133 Identities=11% Similarity=-0.054 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC----CCC-CHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVL-TVEILNELIALFSKLGKGKAAFEVFNKFGDYG----CVA-NQETY 235 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g----~~p-~~~t~ 235 (540)
..+...+...|++++|...+++..+.....+... -..++..+...|...|++++|++.|++..+.. -.+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3444455667788888888877766544311100 12467777777888888888888887765421 111 13456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIET----GSL-PDSEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
..+...+...|++++|...+++.++. +.. ....++..+...|...|++++|.+.+++..
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66667777777777777777766543 110 113345566666777777777777766654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00085 Score=53.62 Aligned_cols=93 Identities=9% Similarity=-0.154 Sum_probs=78.5
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTV---EILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---QETYYF 237 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---~~t~~~ 237 (540)
+...+...|++++|...|+.+.+..+. +. ..+..+...|...|++++|+..|++..+.. +.+ ...+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 444667789999999999999887654 33 688889999999999999999999998764 233 677888
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETG 262 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g 262 (540)
+..++...|++++|...|+.+++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999998863
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.73 E-value=7.6e-05 Score=75.44 Aligned_cols=116 Identities=9% Similarity=-0.018 Sum_probs=87.3
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (540)
.+.|++++|.+.|++..+..+. +..+|+.+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 4568888999999988887665 78889999999999999999999999988764 45677888888888899999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISW--FCKGGKAKEAHVVYT 291 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 291 (540)
++|.+.+++.++... .+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988877632 233344444444 777788888888877
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0004 Score=69.78 Aligned_cols=128 Identities=17% Similarity=0.058 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT---------------VEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.+..+...+.+.+++++|...|++..+..+. + ..+|+.+..+|.+.|++++|+..|++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-----EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-----cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566777888999999999999999887664 4 6899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHV-VYTLAR 294 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 294 (540)
+.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+..++.+.|+.++|.+ .+..|.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 5578899999999999999999999999999864 2455678888888988888887764 444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00049 Score=66.92 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHH----------------hcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKE----------------IGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~----------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
+..+...+.+.+++++|...|++..+ ..+. +..+|+.+...|.+.|++++|++.+++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-----ALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-----HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44556667777888888888887766 2222 45666777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH 287 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 287 (540)
+.. +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.++.+++.
T Consensus 301 ~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 301 EID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 643 3356666666667777777777777777666542 224455555555555555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=58.14 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=56.7
Q ss_pred hcChhhHHHHHHHHHHhc---ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 042609 171 SVGKKEVYALWDIVKEIG---EKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI 247 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (540)
.|++++|...|++..+.+ +. +...|..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC
Confidence 356667777777776652 33 56677777777777777777777777776654 3456667777777777777
Q ss_pred hhHHHHHHHHHHHC
Q 042609 248 FDWAWSVCEKMIET 261 (540)
Q Consensus 248 ~~~a~~~~~~m~~~ 261 (540)
+++|...+++.++.
T Consensus 77 ~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 77 YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=58.27 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=44.8
Q ss_pred cCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 386 AGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 463 (540)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...|++..+.. +-+...+..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555566666655555421 1123445555555666666666666666665543 223555555666666666666666
Q ss_pred HHHHHHHH
Q 042609 464 KLLNEMKD 471 (540)
Q Consensus 464 ~~~~~m~~ 471 (540)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.001 Score=55.93 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..|..+..+|.+.|++++|...+++.++.. +.+...|..+-.+|. ..|++++|.+.|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhc
Confidence 455566666666666666666666665432 123444555554444 566666666666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00079 Score=56.58 Aligned_cols=99 Identities=9% Similarity=-0.017 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccC------C-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKE------K-------GVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGC 228 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~------~-------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~ 228 (540)
......+.+.|++++|...|+...+..... . ...+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~- 93 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE- 93 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Confidence 344456677889999999988877761100 0 00145677778888888888888888888877654
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 229 VANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 229 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
+.+...|..+..++...|++++|...|+..++.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456677777777777888888888777777765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=73.00 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=86.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
..+.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|+..+++..+... -+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34557788888888888887753 33577888888888899999999999988887743 26778888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRG--YCKLEEFDCALKLLN 467 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 467 (540)
+|...+++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998888753 1233444445444 778888888888887
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00068 Score=65.88 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDY---------------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
...|..+...|.+.|++++|++.|++..+. --+.+..+|..+..+|.+.|++++|...+++.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 456888899999999999999999998761 11234567888888999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 262 GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 262 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
. +.+...+..+..+|...|++++|...|++..+..
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4 3467888889999999999999999999988755
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0002 Score=68.83 Aligned_cols=149 Identities=10% Similarity=0.019 Sum_probs=83.4
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455777778888899999999999988764 344321 222333333332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWR 496 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~ 496 (540)
|.+.|++++|...+++.++.. +-+...|..+..+|...|++++|...|++..+. .|+.. .+..+........+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988764 346788889999999999999999999988754 34433 33333333233456677
Q ss_pred HHHHHHHHHHHC
Q 042609 497 TAEKLLEDMRLK 508 (540)
Q Consensus 497 ~A~~l~~~m~~~ 508 (540)
++.++|.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0004 Score=69.90 Aligned_cols=90 Identities=16% Similarity=-0.055 Sum_probs=44.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHHHHHHH
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGV--LT-VEILNELIALFSKLGKGKAAFEVFNKFGD-----YG--CVANQETYYFTI 239 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~g--~~p~~~t~~~ll 239 (540)
.+|++++|..++++..+...+--+. |+ ..+++.|...|...|++++|+.++++.++ .| .+-...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4456666666665555443321111 11 34556666666666666666665555432 11 111233455555
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 042609 240 EALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~ 259 (540)
..|...|++++|+.++++.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.003 Score=51.48 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHHHHC
Q 042609 422 GQMEEACEILNEAKKN 437 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~ 437 (540)
++.++|...|++..+.
T Consensus 75 ~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL 90 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcC
Confidence 3444444444444333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00059 Score=68.65 Aligned_cols=88 Identities=11% Similarity=-0.032 Sum_probs=61.0
Q ss_pred HHhcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----CC-CC-CHHHHHH
Q 042609 207 FSKLGKGKAAFEVFNKFGDY---GCVA----NQETYYFTIEALSRRKIFDWAWSVCEKMIET-----GS-LP-DSEKVGK 272 (540)
Q Consensus 207 ~~~~g~~~~A~~~f~~m~~~---g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~ 272 (540)
+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55678888888888776542 1112 3456788888888888888888888776543 21 12 2455778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~ 294 (540)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888888888777654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0013 Score=53.67 Aligned_cols=113 Identities=13% Similarity=-0.028 Sum_probs=92.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 042609 387 GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCA 462 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 462 (540)
+++++|.+.|++..+.| .|+.. |-..|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999988887 33444 6666777788899999999999986 77888889999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A~~l~~~m~~~g~~ 511 (540)
.+.|++..+.| +...+..|-..|. . .+++++|.++|++..+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQY-AGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999875 5666766766665 5 68999999999999988753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00043 Score=66.42 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH------------------HHHHHHHHHHhCCChhHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQE------------------TYYFTIEALSRRKIFDWAWSVCEK 257 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~ 257 (540)
....|..+...+.+.|++++|+..|++..... |+.. .|..+..++.+.|++++|...+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567888888889999999999999987643 4433 444444455555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 258 MIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 258 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
.++.. +.+...+..+..+|...|++++|...|++..
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54432 1234444555555555555555555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0012 Score=54.77 Aligned_cols=96 Identities=15% Similarity=-0.029 Sum_probs=56.7
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCC--CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CCCC-
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKG--VLT-----VEILNELIALFSKLGKGKAAFEVFNKFGDY-----GCVA- 230 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~--~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g~~p- 230 (540)
....+.+.|++++|...|++..+..+.... ..+ ...|+.+..++.+.|++++|+..|++.++. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 344566779999999999988887664100 001 237777777777777777777777776653 0012
Q ss_pred CHHHH----HHHHHHHHhCCChhHHHHHHHHHH
Q 042609 231 NQETY----YFTIEALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 231 ~~~t~----~~ll~~~~~~~~~~~a~~~~~~m~ 259 (540)
+...| .....++...|++++|+..|++.+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 22334 444444444455555554444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0058 Score=50.65 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----CCC
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKN-----HSRLS-PVTY----HTLIRGYCKLEEFDCALKLLNEMKD-----VGV 474 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~-----~g~ 474 (540)
.|..+-.++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++ .|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666666653 11333 3455 6666777777777777777776652 345
Q ss_pred CCCHHHHHHHH
Q 042609 475 QPNVDEYNKLI 485 (540)
Q Consensus 475 ~p~~~~~~~ll 485 (540)
.+........+
T Consensus 139 ~~~~~~~~~~~ 149 (159)
T 2hr2_A 139 TPGKERMMEVA 149 (159)
T ss_dssp CTTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=51.45 Aligned_cols=79 Identities=10% Similarity=0.017 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 042609 176 EVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVC 255 (540)
Q Consensus 176 ~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 255 (540)
.|...|+...+..+. +...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|
T Consensus 3 ~a~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTD-----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555554443 56666666666666666666666666665543 334455555555555666666666655
Q ss_pred HHHHH
Q 042609 256 EKMIE 260 (540)
Q Consensus 256 ~~m~~ 260 (540)
++.++
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.023 Score=58.38 Aligned_cols=171 Identities=11% Similarity=0.019 Sum_probs=126.5
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK----------GKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
.++|.+.++.+.+..++ +..+|+.--..+.+.|+ ++++++.++++.+.. +-+..+|+.-..++.
T Consensus 45 ~eeal~~~~~~l~~nP~-----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35689999999998887 88899988877777777 899999999998865 668889999888888
Q ss_pred hCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----
Q 042609 244 RRK--IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG-KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE----- 315 (540)
Q Consensus 244 ~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----- 315 (540)
+.+ +++++.+.++++++.. .-+..+|+.-..++.+.| .++++.+.++++.+.+ .-+...|+..-..+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccc
Confidence 999 6799999999999875 367888888877888888 8899999999888765 34566666544333321
Q ss_pred --------CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC
Q 042609 316 --------DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD 353 (540)
Q Consensus 316 --------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 353 (540)
.+.++++++.+++...... -+...|...-..+.+.+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 1456666666666655432 244455555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0013 Score=50.72 Aligned_cols=90 Identities=16% Similarity=0.056 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-------HH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD-------SE 268 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~ 268 (540)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|...+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 45667777778888888888888888877653 4467777777778888888888888888877653 33 34
Q ss_pred HHHHHHHHHHhcCCHHHHHH
Q 042609 269 KVGKIISWFCKGGKAKEAHV 288 (540)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~ 288 (540)
.+..+..++...|+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 44445555555554444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.012 Score=60.50 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG--DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG-QMEEACEI 430 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~ 430 (540)
+++++..++.+.+.. +.+..+|+.-.-.+.+.| +++++++.++++.+...+ |...|+.--..+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 566666666666543 235556665555566666 457777777777666443 5666666655666666 66777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC
Q 042609 431 LNEAKKNHSRLSPVTYHTLIRGYCKL--------------EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALD 494 (540)
Q Consensus 431 ~~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~ 494 (540)
+.++++.. .-|...|+.....+.+. +.++++++.+++...... -|...|+.+- .+..+.++
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~-~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHR-WLLGRAEP 241 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHH-HHHSCCCC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHH-HHHhcCCC
Confidence 77766654 23556666655555442 456788888877775421 2444454444 33335544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0052 Score=45.24 Aligned_cols=82 Identities=21% Similarity=0.159 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567777777778888888888887776653 3456677777777777777777777777776653 234555555555
Q ss_pred HHHh
Q 042609 276 WFCK 279 (540)
Q Consensus 276 ~~~~ 279 (540)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0042 Score=48.46 Aligned_cols=62 Identities=24% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 443 PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
...|..+...|...|++++|...|++..+.. +.+...|..+-..|. ..|++++|.+.|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQ-GQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444321 112233333333332 3444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0017 Score=53.77 Aligned_cols=87 Identities=10% Similarity=0.005 Sum_probs=61.4
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGK----------AAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
.+.+.+++|.+.++...+..+. +...|+.+..++...++++ +|+..|++.++.. +-+..+|..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3446678899999999888876 8999999999988887754 7777777776654 3355667777
Q ss_pred HHHHHhCC-----------ChhHHHHHHHHHHHC
Q 042609 239 IEALSRRK-----------IFDWAWSVCEKMIET 261 (540)
Q Consensus 239 l~~~~~~~-----------~~~~a~~~~~~m~~~ 261 (540)
..+|...| ++++|.+.|++.++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 77776553 455555555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0054 Score=45.12 Aligned_cols=78 Identities=18% Similarity=0.083 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...+++++|...|+...+..+. +...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 344555677889999999999999887765 78899999999999999999999999998764 345666666665
Q ss_pred HHHh
Q 042609 241 ALSR 244 (540)
Q Consensus 241 ~~~~ 244 (540)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0029 Score=48.74 Aligned_cols=89 Identities=10% Similarity=-0.045 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-------H
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-------Q 232 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-------~ 232 (540)
.+..+...+...|++++|...|+...+..+. +...|..+...|...|++++|++.|++..+.. |+ .
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 3445566778889999999999999988775 88999999999999999999999999998764 44 4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVC 255 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~ 255 (540)
..+..+..++...|+++.|...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHH
Confidence 55555666666666555554433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0054 Score=50.74 Aligned_cols=98 Identities=10% Similarity=-0.069 Sum_probs=74.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 208 SKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF----------DWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~----------~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
.+.+.+++|++.+++..+.. +.+...|..+-.++...+++ ++|+..|++.++.. +-+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45567899999999998765 56888888888888887764 59999999998874 24677888899999
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042609 278 CKGG-----------KAKEAHVVYTLAREKKMYPPQSVVAFLI 309 (540)
Q Consensus 278 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 309 (540)
...| ++++|.+.|++..+.+ |+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 8764 7888888888877754 6655554433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0074 Score=45.81 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777776654 33456677777777777777777777776654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.014 Score=44.27 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
...+..+...|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555555555442 1233445555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.12 Score=49.19 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCCh-HHHH---HHHHHHhh-CCCCCCHHHHHHHHHHHHh
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK----LGKG-KAAF---EVFNKFGD-YGCVANQETYYFTIEALSR 244 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~-~~A~---~~f~~m~~-~g~~p~~~t~~~ll~~~~~ 244 (540)
..+|..+|++..+..+. ....|..+.-+|.. .+.. .... ..++.... ...+.+..+|..+...+..
T Consensus 215 ~~~A~~l~e~Al~lDP~-----~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPE-----FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 46799999999988775 56666665555531 1111 1111 11111111 1125677777777766766
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
.|++++|...+++.+..+ |+...|..+...+.-.|+.++|...|++....+ |...+|...
T Consensus 290 ~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~~ 349 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYWI 349 (372)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHHH
Confidence 788999998888888875 777777777888888899999988888887765 666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.014 Score=43.80 Aligned_cols=56 Identities=7% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVE-ILNELIALFSKLGKGKAAFEVFNKFGDYG 227 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~g 227 (540)
.+...|++++|...|+.+.+..+. +.. .|..+...|...|++++|++.|++..+..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445667788888888877776654 666 77777888888888888888888877654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.013 Score=57.89 Aligned_cols=87 Identities=8% Similarity=-0.052 Sum_probs=64.3
Q ss_pred hcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 042609 209 KLGKGKAAFEVFNKFGDY---GCVA----NQETYYFTIEALSRRKIFDWAWSVCEKMIET-----GS-LPD-SEKVGKII 274 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~---g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~li 274 (540)
..|++++|+.++++.++. -+.| ...+++.+..+|...|++++|..++++.++. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999998887541 1222 2467888899999999999999998887653 31 232 45688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042609 275 SWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~ 295 (540)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999988887653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.02 Score=56.56 Aligned_cols=90 Identities=8% Similarity=-0.020 Sum_probs=71.0
Q ss_pred hcChhhHHHHHHHHHHhcccCCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHHHHHHHH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGV--LT-VEILNELIALFSKLGKGKAAFEVFNKFGD-----YG--CVANQETYYFTIE 240 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~g--~~p~~~t~~~ll~ 240 (540)
.|++++|..++++..+...+--+. |+ ..+++.|...|...|++++|+.++++.++ .| .+-...+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 478899999999887765442221 33 46899999999999999999999999854 23 1223567999999
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~ 260 (540)
.|...|++++|+.++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.25 Score=53.02 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=9.8
Q ss_pred HHHHHHHHhCCChhHHHHHH
Q 042609 236 YFTIEALSRRKIFDWAWSVC 255 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~ 255 (540)
..++..+.+.|..+.|.++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHHHhCCChHHheecC
Confidence 44444555555555554433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.04 Score=54.40 Aligned_cols=91 Identities=18% Similarity=0.042 Sum_probs=52.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRG---LKP----DVYTYTGLMSGYANGGQMEEACEILNEAKKN-----H-SRLS-PVT 445 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~ 445 (540)
+..+.+.|++++|+.++++..+.. +.| ...+++.|...|...|++++|..+++++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344555666777777666665431 111 1345666666666667777776666665542 1 1122 245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666777777777666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.028 Score=55.43 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=72.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCC-H
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYG---CVA----NQETYYFTIEALSRRKIFDWAWSVCEKMIET-----G-SLPD-S 267 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g---~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~ 267 (540)
..+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++.+.. | ..|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33566778899999999999986531 223 3567889999999999999999999988653 2 1222 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5688999999999999999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.12 Score=55.68 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=65.7
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..++..+.+.|..++|.++.+ +.. .-.......|++++|+++.+.+ .+...|..+...
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-------------~~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~ 690 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-------------DQD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-------------CHH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC-------------Ccc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHH
Confidence 444555555666666665442 111 1133445678888888886543 466788888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+....
T Consensus 691 al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887643 34555566667777766655544443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.22 Score=47.28 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY 481 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 481 (540)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 345555555555555566666666666666553 55555555555566666666666666655543 3444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.67 Score=38.80 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=87.5
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...+.|+++.|.++-+.+ . +...|..|.......|+++-|.+.|.+..+ |..+.-.|.-.|
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----N-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTG 74 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhC
Confidence 456778999998886654 1 678999999999999999999999998765 445555666677
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDML 326 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 326 (540)
+.+...++-+.....|- ++.....+.-.|+++++.++|.+. |-.| -..++ .+..|..+.|.++.
T Consensus 75 ~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~----eA~~~---A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP----LAYAV---AKANGDEAAASAFL 138 (177)
T ss_dssp CHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH----HHHHH---HHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH----HHHHH---HHHcCcHHHHHHHH
Confidence 77776666555555542 455666777789999998888652 2111 11111 12236677777777
Q ss_pred HHh
Q 042609 327 DDF 329 (540)
Q Consensus 327 ~~m 329 (540)
+++
T Consensus 139 ~~~ 141 (177)
T 3mkq_B 139 EQA 141 (177)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.19 Score=40.95 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHHhCCCHHHH
Q 042609 424 MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---EFDCALKLLNEMKDVGVQP-N-VDEYNKLIQSLCLKALDWRTA 498 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p-~-~~~~~~ll~~~~~~~g~~~~A 498 (540)
+..+.+-|.+..+.|. ++..+.-.+..++++.+ +++++..++++..+.+ .| + ...+-.+--++. +.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~-kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNY-RLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH-HTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHH-HccCHHHH
Confidence 4455566666555553 56666666677777766 5557777777776543 23 1 222222222444 67777777
Q ss_pred HHHHHHHHHCCCCCcH-HHHHHHHHH
Q 042609 499 EKLLEDMRLKGLHLNG-ITRALIRAV 523 (540)
Q Consensus 499 ~~l~~~m~~~g~~p~~-~t~~ll~a~ 523 (540)
.++++.+++. .|+. ....+.+.+
T Consensus 91 ~~y~~~lL~i--eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 7777777764 4543 333554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.072 Score=39.70 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDYGCVANQE-TYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
...+...|++++|+..|++..+.. +.+.. .+..+..++...|++++|...|++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556667777777776666543 33445 5666666666666666666666666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.21 Score=37.11 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 442 SPVTYHTLIRGYCKLEE---FDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
|+..+..+..++...++ .++|..++++.++. .|+...-..++.....+.|++++|+..|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444444444433322 45555555555543 23333333333222235555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.8 Score=36.14 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
..+...+......|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33445556666677777777777765443 3566777777777777777777777777777766653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.32 Score=39.63 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG---QMEEACEILNEAKKNHSRL--SPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 463 (540)
+..+.+-|.+....|. ++..+...+-.++++.+ +++++..+++...+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666666666554 67888888888888877 6678999999888864 24 3556667778889999999999
Q ss_pred HHHHHHHHCCCCCCHHHH
Q 042609 464 KLLNEMKDVGVQPNVDEY 481 (540)
Q Consensus 464 ~~~~~m~~~g~~p~~~~~ 481 (540)
+.++.+++. .|+..--
T Consensus 92 ~y~~~lL~i--eP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQA 107 (152)
T ss_dssp HHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHhc--CCCCHHH
Confidence 999998875 5654433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.2 Score=37.21 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
.++|..+|++..+..++ ++..+..+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-----NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666666665554 5666666666666666666666666666554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=1.3 Score=35.01 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=82.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
.-.|.+++..++..+.... .+..-+|++|-..... -+-+-..+.++.. |.-.|. ..+|++..+
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~-a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLES-IDCRYMFQVLDKI---GSYFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHH-CCHHHHHHHHHHH---GGGSCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchh-hchhHHHHHHHHH---hhhcCc----------HhhhcHHHH
Confidence 3456677777776666542 2355566665554443 3344444444332 222332 234555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
...+-.+ ..+.......++.+...|+-++-.+++..+.. +..|+....-.+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5544443 23445566667777778888887777777533 23567777777778888888888888888887777
Q ss_pred CC
Q 042609 438 HS 439 (540)
Q Consensus 438 g~ 439 (540)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 74
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.28 Score=37.15 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKE--KGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
.+-.+...+...+++..|...|+...+....+ .+.....++..|..+|.+.|++++|+..+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33445555556666666666666555443221 12234556666666666666666666666666553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.45 E-value=1.9 Score=36.09 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=40.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 208 SKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH 287 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 287 (540)
...|+++.|.++.+.+ -+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3566666666665554 3455666666666666666666666665432 233444455556555555
Q ss_pred HHHHHHHH
Q 042609 288 VVYTLARE 295 (540)
Q Consensus 288 ~~~~~m~~ 295 (540)
++-+....
T Consensus 81 kla~iA~~ 88 (177)
T 3mkq_B 81 KMQNIAQT 88 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.42 Score=43.59 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 042609 409 YTYTGLMSGYAN-----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL-EEFDCALKLLNEMKDVGV 474 (540)
Q Consensus 409 ~t~~~ll~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 474 (540)
..|..|...|.+ -|+.++|.+.|++.++....-+..++....+.++.. |+.+++.+.+++.+....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 345555555555 255555555555555542111244444445555442 555555555555554433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.59 E-value=1.1 Score=35.10 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCCHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDC---ALKLLNEMKDVGVQP-NVDEYNKLIQSLCLKALDWR 496 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~g~~~ 496 (540)
...+..+.+-|.+....| .++..+--.+..++++..+... ++.++++..+.+ .| ...-+...+..-+-+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555555555544 2566666666666666665544 777777766543 12 23333333332223777888
Q ss_pred HHHHHHHHHHHC
Q 042609 497 TAEKLLEDMRLK 508 (540)
Q Consensus 497 ~A~~l~~~m~~~ 508 (540)
+|.++++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887775
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.76 Score=41.87 Aligned_cols=110 Identities=10% Similarity=-0.031 Sum_probs=81.3
Q ss_pred CHHHHHHHHHH-HHhc--CC------hHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhC-----CChhHHHHHHHHH
Q 042609 196 TVEILNELIAL-FSKL--GK------GKAAFEVFNKFGDYGCVAN---QETYYFTIEALSRR-----KIFDWAWSVCEKM 258 (540)
Q Consensus 196 ~~~~~~~li~~-~~~~--g~------~~~A~~~f~~m~~~g~~p~---~~t~~~ll~~~~~~-----~~~~~a~~~~~~m 258 (540)
....|..++.+ +... |. ...|..++++..+.. |+ -..|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 45567777653 3432 33 457777788877753 65 56788888889885 9999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 042609 259 IETGSLPDSEKVGKIISWFCKG-GKAKEAHVVYTLAREKKMY--PPQSVVAF 307 (540)
Q Consensus 259 ~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~--p~~~~~~~ 307 (540)
++.+..-+..++....+.++.. |+.++|.+.+++....... |+....+.
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9875433477888888888884 9999999999999987755 66554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.23 E-value=1.4 Score=33.10 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNH------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
-+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|++++|...+++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444555555555555555444320 012234444444555555555555555554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.41 E-value=1.6 Score=35.25 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
+++++|.++|+.++..+-+. ...|......-.+.|++.+|.+++...+..+.. +...+...|+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 56666777776665542222 566666666666677777777777776665544 34444444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.96 E-value=1.3 Score=35.76 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNA-VFNSVIS------AYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
++..++|++.... ++|+.. .|..-|. .+...+++++|.++|+.+...+-.- ...|-...+--.+.|++.+|
T Consensus 36 ~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kA 113 (161)
T 4h7y_A 36 NKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKS 113 (161)
T ss_dssp HHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHH
Confidence 5666677766654 444421 1111111 1223478999999999987653333 66676666667789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
.+++...+..+.+|. ....+.++
T Consensus 114 RkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 114 KQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred HHHHHHHhccCCCcH-HHHHHHHH
Confidence 999999999875543 33444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.82 E-value=1.5 Score=45.98 Aligned_cols=127 Identities=20% Similarity=0.151 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCC-CHHH--
Q 042609 342 SSVIRSLCRMKD-VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD-MTPAMEMLKLMRSR------GLKP-DVYT-- 410 (540)
Q Consensus 342 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-~~~t-- 410 (540)
..++..+...+. .+.|..+|+++.+....-+......+|..+.+.+. --+|.+++.+..+. ...+ +...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 57899999998875322222222333443333332 22355555443321 1111 1111
Q ss_pred -H---HHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 411 -Y---TGLM----SGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 411 -~---~~ll----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
. ..|+ .-|...|+++.|+.+-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0 1122 23557899999999999988763 345689999999999999999999999887
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.62 E-value=1.1 Score=35.03 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=63.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCH
Q 042609 385 KAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEE---ACEILNEAKKNHSRL--SPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~ 459 (540)
....+..+.+-|.+....|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33445556666666655444 677777777778887776554 889999888864 23 335556677888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH
Q 042609 460 DCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~~p~~~ 479 (540)
++|.+.++.+++. .|+..
T Consensus 91 ~~A~~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 91 EKALKYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHh--CCCCH
Confidence 9999999999865 46443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.04 E-value=11 Score=42.27 Aligned_cols=182 Identities=9% Similarity=0.016 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-----------------------CCH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-----------------------PGN 373 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------------------p~~ 373 (540)
+..+.+.++...... +....-.+..+|...|++++|.+.|++... |+. .-.
T Consensus 826 ~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHH
Confidence 555555554433221 222223445556677777777777765421 110 011
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-C-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 374 AVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-K-PD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
.=|..++..+.+.|.++.+.++-....+..- . ++ ...|..+.+++...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 2367778888888888888887766554321 1 11 12578888888888999988888887776543 34566677
Q ss_pred HHHHHhcCCHH------------HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHhCCCHHHHHH-HHHHHH
Q 042609 450 IRGYCKLEEFD------------CALKLLNEMKDVG-VQPNVDEYNKLIQSLCLKALDWRTAEK-LLEDMR 506 (540)
Q Consensus 450 i~~~~~~g~~~------------~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~g~~~~A~~-l~~~m~ 506 (540)
+...|..|..+ +..+++..-.+.. ..-+...|..++.++....|++.+|-. +|+...
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 77666666544 4444443222110 001112466666676666677776655 455544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=1.8 Score=41.72 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK-----DVGVQPNVDEY 481 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 481 (540)
...++..+...|+.++|...+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+. +.|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445566667777777777777766653 4566777777777777777777777777654 34777766543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.79 E-value=2.1 Score=44.89 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=43.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
+-|...|+++.|+.+-++.... .+-+-.+|-.|..+|.+.|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455689999999999998875 3446779999999999999999999888876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=1.9 Score=41.62 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=36.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE-----KKMYPPQSV 304 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 304 (540)
.++.++...|+++++...+..+.... +-+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34445555566666655555554432 23555555666666666666666665555432 355555544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.55 E-value=19 Score=35.23 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHH
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSR--GLKPD---VYTYTGLMSGYANGGQMEEACEILNEAKK----NHSRLSP--VTY 446 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~ 446 (540)
.|...|...|++.+|.+++..+... |.... ...+...++.|...+++.+|..++.++.. ....|+. ..|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444455555555555555554322 21111 12334444445555555555555554421 1111111 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
...+..+...+++.+|.+.|.+..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444455555555555544443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.16 E-value=2.5 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 214 KAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 214 ~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
-+..+-++.+...++.|++......+++|-+.+++..|.++++-++..
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355556666666667777777777777777777777777777766543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.06 E-value=22 Score=34.08 Aligned_cols=170 Identities=13% Similarity=0.055 Sum_probs=91.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPP-----GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR--GLKPDVYTYTGL- 414 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l- 414 (540)
-++..|...|++.+|..++.++.+.--.. -...|..-+..|...+++.++...+...... .+.++...-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 46777778888888877777776431111 1234566677788888888888888766433 222333332222
Q ss_pred -H--HHHH-hcCCHHHHHHHHHHHHHC--CC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 042609 415 -M--SGYA-NGGQMEEACEILNEAKKN--HS-RL---SPVTYHTLIRGYCKLEEFDCALKLLN-EMKDVGVQPNVDEYNK 483 (540)
Q Consensus 415 -l--~~~~-~~g~~~~A~~~~~~m~~~--g~-~p---~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~ 483 (540)
. -.+. ..+++.+|...|-+..+. .. .| +...|..|.... . ++..+...++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-L-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-T-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-c-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 1 1244 678888888877766431 00 11 122333332222 2 22222222221 2111113466677777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
++.+| +.+++.+..++++.... .+..|....
T Consensus 262 L~~a~--~~~dl~~f~~iL~~~~~-~l~~D~~l~ 292 (394)
T 3txn_A 262 VAEAS--HKRSLADFQAALKEYKK-ELAEDVIVQ 292 (394)
T ss_dssp HHHHH--HTTCHHHHHHHHHHSTT-TTTTSHHHH
T ss_pred HHHHH--HhCCHHHHHHHHHHHHH-HHhcChHHH
Confidence 77775 56788877777776543 355565543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.04 E-value=19 Score=40.30 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKF 223 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m 223 (540)
+...--.+...|...|++++|.+.|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444344455566666777776666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.67 E-value=7.5 Score=28.82 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
+.-+..+-++.+......|+.....+.+.+|.+.+++..|.++|+-++.+ +.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 55566666666666777777777777777777777777777777777643 2222345665554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.52 E-value=26 Score=34.33 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=32.5
Q ss_pred cChhhHHHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEK-GVLTVEILNELIALFSKLGKGKAAFEVFNKF 223 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 223 (540)
++++.|.+.+-.+.+..+... ..-+......++..|...|+++...+.+.-+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L 82 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL 82 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 666667765555554333222 2234667777888888888888777766655
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.55 E-value=21 Score=30.34 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 421 GGQMEEACEILNEAKKNHSRL-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
.+...++.++|..|..+|+-- -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444667777777777766533 34566777777777788888888887777776666
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.93 E-value=37 Score=32.49 Aligned_cols=130 Identities=11% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHHHH------H
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKL-GKGKAAFEVFNKFGDYGCVANQETY------Y 236 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~m~~~g~~p~~~t~------~ 236 (540)
|...+.+.++.++...++......-..-........-..||..+... +..+.-+++..+..+.. .-...+| .
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34455666665555555544333222111111344555666666553 33333344444433211 0111122 1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPD-----SEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
-+...|...|++.+|..++..+.+.--..| ..+|..-+.+|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 356677777777777777776655311111 2335555666777777777777776654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.88 E-value=13 Score=29.19 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
+.-+..+-++.+......|+.....+.+.+|.+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45555666666666677777777777777777777777777777777644 2233445665554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.55 E-value=62 Score=34.85 Aligned_cols=257 Identities=8% Similarity=0.008 Sum_probs=136.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH-HHHHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSE--KVGKIISWFCKGGKAKEAHVVYTLAREKKM--YPP----QSVVA-FLISSL 312 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~-~ll~~~ 312 (540)
....|+.+++..++...+..+-..+.. .-..+.-+...+|..+++..++.......- .-+ ..... .+=-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777766666544321112322 233444456666766677776666554321 111 11111 121222
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCC
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFS--SVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA--YSKAGD 388 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~ 388 (540)
...+-.-+++.+.+..+....-. ...... ++...+.-.|+.+....++..+.+.. +..+...+.-+ +...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 22211224555555555543211 011122 22333446678787888888776532 33333334444 446789
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYT---GLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKL 465 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 465 (540)
.+.+..+.+.+... ..| ..-|. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999999988865 122 23333 23346778889888888999988753 22333334444455567777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 042609 466 LNEMKDVGVQPNVDEYNKLIQSLCLKALD-WRTAEKLLEDMRL 507 (540)
Q Consensus 466 ~~~m~~~g~~p~~~~~~~ll~~~~~~~g~-~~~A~~l~~~m~~ 507 (540)
++.+.+.+ .|...--..+.-|.. ..|. -.+|..++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli-~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIA-CAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHcc
Confidence 77666543 444443333433433 2322 2678888888864
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.25 E-value=8.9 Score=30.14 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 215 ~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
+..+-++.+...++.|+.......+++|-+.+++..|.++++-++.. ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 45566667777778888888888888888888888888888877654 223344555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.77 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.31 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.3 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.29 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.17 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.09 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.03 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.02 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.97 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.93 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.9 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.85 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.66 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.58 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.54 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.45 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.39 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.23 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.21 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.12 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.26 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.76 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.48 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.05 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.81 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.18 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.3e-18 Score=165.72 Aligned_cols=344 Identities=12% Similarity=0.030 Sum_probs=266.6
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+.+.|++++|.+.++++.+..+. +..+|..+...|.+.|++++|+..|++..+.. +-+..+|..+..++.+.
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPD-----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhh
Confidence 3556789999999999999887765 78999999999999999999999999998764 45678899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHH----------------------------------HHHHhcCCHHHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKII----------------------------------SWFCKGGKAKEAHVVYT 291 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li----------------------------------~~~~~~g~~~~A~~~~~ 291 (540)
|++++|...+....+... .+........ ......+....+...+.
T Consensus 81 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 999999999998877643 2222222222 22333444445555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 042609 292 LAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP 371 (540)
Q Consensus 292 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 371 (540)
...... |+.......+.......|..++|...++....... -+...+..+...+...|++++|...+++....+ +.
T Consensus 160 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 160 KAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HhhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 544433 44333333333344444999999999998877542 245678889999999999999999999998764 44
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
+...+..+...|.+.|++++|...|++..+... -+..+|..+...|...|+.++|...++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 677888899999999999999999999988743 257789999999999999999999999988764 567888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH-HHH-HHHHHHHHHH
Q 042609 452 GYCKLEEFDCALKLLNEMKDVGVQP-NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNG-ITR-ALIRAVKELE 527 (540)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~-~ll~a~~~l~ 527 (540)
.|.+.|++++|.+.|++..+. .| +...+..+-..|. +.|++++|.+.|++.++. .|+. ..+ ++..++.+++
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999865 34 4556666666665 899999999999999875 4543 333 7777776654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.9e-15 Score=143.68 Aligned_cols=316 Identities=13% Similarity=0.030 Sum_probs=246.8
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE- 240 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~- 240 (540)
..+...+.+.|++++|...|+.+.+..+. +..+|..+...|.+.|++++|+..+....+.. +.+.........
T Consensus 37 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 110 (388)
T d1w3ba_ 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPL-----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHhhhhccccccccccccccccc-ccccccccccccc
Confidence 34455677889999999999999988775 78999999999999999999999999987654 223232222222
Q ss_pred ---------------------------------HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 241 ---------------------------------ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH 287 (540)
Q Consensus 241 ---------------------------------~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 287 (540)
.....+....+...+....... +.+...+..+...+...|++++|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 189 (388)
T d1w3ba_ 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHH
Confidence 2223344444445555544432 345677888889999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 288 VVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 288 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
..++...+.. |+ ...+..+...+... |++++|...++....... .+...+..+...+.+.|++++|...|++..+
T Consensus 190 ~~~~~al~~~--p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 265 (388)
T d1w3ba_ 190 HHFEKAVTLD--PNFLDAYINLGNVLKEA-RIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--cccHHHHHHHhhhhhcc-ccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988755 44 44555555555555 999999999999887643 3456678888999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 367 EGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY 446 (540)
Q Consensus 367 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (540)
.. +-+..++..+...|...|++++|...++...... +.+...+..+...|.+.|++++|...|++..+.. +-+..+|
T Consensus 266 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 342 (388)
T d1w3ba_ 266 LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAH 342 (388)
T ss_dssp TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 63 3467789999999999999999999999887763 4577889999999999999999999999998864 3357889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCC
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKLIQSLCLKALD 494 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~g~ 494 (540)
..+...|.+.|++++|...|++.++. .|+ ...|..+-..|- +.||
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~-~~~D 388 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLK-EMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-HcCC
Confidence 99999999999999999999999875 454 667777777664 5554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.6e-12 Score=118.16 Aligned_cols=240 Identities=10% Similarity=-0.001 Sum_probs=138.1
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.+.+.|++++|...|+.+.+..+. +..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQDPK-----HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 445667777777777777766554 66777777777777777777777777776543 335566666667777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDML 326 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 326 (540)
++++|.+.++...... |+................ .......+..+... +...++...|
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~-~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAG-------------------LGPSKRILGSLLSD-SLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHH-HHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhcc-------------------cccchhhHHHHHHh-hHHHHHHHHH
Confidence 7777777777766542 221100000000000000 00000011111222 4556666666
Q ss_pred HHhHhccC-CCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042609 327 DDFSGEAR-KYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 327 ~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (540)
.+...... ..+...+..+...+...|++++|...|++..... +-+...|..+...|.+.|++++|.+.|++..+...
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP- 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-
Confidence 65554322 2233445566666777777777777777766542 22456666677777777777777777777665421
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
-+..+|..+..+|.+.|++++|+..|++.++
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1455666677777777777777777776655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.8e-11 Score=115.52 Aligned_cols=244 Identities=14% Similarity=0.039 Sum_probs=184.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...+.+.++.. +-+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34566789999999999999998865 4568899999999999999999999999998764 346788888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHH
Q 042609 282 KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLL 361 (540)
Q Consensus 282 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 361 (540)
++++|.+.++...... |+............. ..+.......+..+...+...++...+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 9999999999887644 332111000000000 000111111222334456677888888
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 362 SKMISEGP-PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR 440 (540)
Q Consensus 362 ~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (540)
.+..+... ..+...+..+...+...|++++|...|++....... +...|..+...|...|++++|.+.|++..+.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 88775432 345677888889999999999999999998776322 57889999999999999999999999998863 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 441 LSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 441 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
-+..+|..+..+|.+.|++++|++.|++.++
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=2.8e-08 Score=92.41 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 176 EVYALWDIVKEIGEKEKGVLTVEILNELIALFSKL--------------GKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 176 ~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
.+..+|+++....+. +...|-.-+..+-.. +..++|..+|++..+...+.+...|...+..
T Consensus 34 Rv~~vyerAl~~~~~-----~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 34 RVMFAYEQCLLVLGH-----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 355566666655443 667777666554332 2345666666666654444455556666666
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 321 (540)
+.+.|+++.|..+|+.+++........+|...+..+.+.|+++.|.++|+.+.+..... ...|......
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~-~~~~~~~a~~---------- 177 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-HHVYVTAALM---------- 177 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-THHHHHHHHH----------
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHHH----------
Confidence 66667777777777766654332334456666666666666666666666665543211 1111111111
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
.+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|..+|++..+
T Consensus 178 -------------------------e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 178 -------------------------EYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp -------------------------HHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------------HHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 112234445555555555443 223344555555555555555555555555444
Q ss_pred CC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 402 RG-LKPD--VYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 402 ~g-~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
.. ..|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 2221 33455555544555555555555555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=4.2e-08 Score=92.48 Aligned_cols=267 Identities=13% Similarity=0.013 Sum_probs=138.9
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC----CC-CCHHHHHHHHHH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG----CV-ANQETYYFTIEA 241 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g----~~-p~~~t~~~ll~~ 241 (540)
.+...|++++|..++++..+..+.........+++.+...|...|++++|+..|++..+.. .. ....++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 4567789999999998877755431100113567778888889999999999998875421 11 113345666677
Q ss_pred HHhCCChhHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIET----GSLP---DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP----PQSVVAFLIS 310 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~----g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~ 310 (540)
+...|++..+...+...... +... ....+..+...+...|+++.+...++......... ....+.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 78888888888887776542 1111 12345566677888888888888887766532111 1122222222
Q ss_pred HHHhCCchHHHHHHHHHHhHhccCCCC------cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 042609 311 SLCQEDETVKLALDMLDDFSGEARKYA------IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP---GNAVFNSVIS 381 (540)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~ 381 (540)
.+... +....+...+........... ...+..+...+...|++++|...+++........ ....+..+..
T Consensus 181 ~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 181 CSLAR-GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHhh-hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 23332 455555555444332111100 0112333344445555555555555443321111 1222333444
Q ss_pred HHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 382 AYSKAGDMTPAMEMLKLMRS----RGLKPD-VYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+|...|++++|...++.... .+..|+ ..++..+-..|.+.|++++|.+.+++.
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555544431 122222 223344444444555555555554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=1.1e-07 Score=88.35 Aligned_cols=187 Identities=7% Similarity=0.007 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHH
Q 042609 282 KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLL 361 (540)
Q Consensus 282 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 361 (540)
..++|..+|++..+.....+...|.......... |+.+.|..+|+.+.+.........|...+..+.+.|+.+.|..+|
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~-~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3455666666665543333344444444444443 677777777777665433322345777788888888899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 042609 362 SKMISEGPPPGNAVFNSVISA-YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH-S 439 (540)
Q Consensus 362 ~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~ 439 (540)
+++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. .-+...|...+..+.+.|+++.|..+|++..+.. .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998876433 33444433332 445689999999999998862 3367889999999999999999999999988864 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 440 RLS--PVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 440 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 46899999988899999999999998875
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.6e-07 Score=88.29 Aligned_cols=96 Identities=8% Similarity=-0.148 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----H
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-----QETYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----S 267 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~ 267 (540)
.........+...|++++|+++|++..+.. +.+ ..++..+..++...|++++|...+++..+... .++ .
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 334444555677888888888888876643 111 23566666777777888888888877655311 011 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
..+..+...+...|++..+...+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al 118 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAF 118 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777777776666544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.2e-07 Score=86.46 Aligned_cols=193 Identities=5% Similarity=-0.053 Sum_probs=139.6
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG-KGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
+...+.+.+..++|.++++.+.+..+. +..+|+.....+...| ++++|+..+++..+.. +-+..+|+.+...+
T Consensus 49 ~~~~~~~~e~~~~Al~~~~~ai~lnP~-----~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 49 FRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 333556678889999999999999887 8999999999998876 5899999999998765 56788999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----Cc
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE-----DE 317 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~ 317 (540)
.+.|++++|+..+.++++.. +.+...|..+...+.+.|++++|...|+.+.+.+ .-+...|+.+-..+... .+
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 99999999999999999874 3568899999999999999999999999999876 22344555433222221 12
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
.+++|++.+........ .+...|..+...+.. ...+++...++...+
T Consensus 201 ~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 35556666655554432 133334444333322 234455555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2e-07 Score=86.73 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIR 346 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 346 (540)
..++.+...+.+.+..++|.++++++.+.+ |+.. .|+..-..+...++++++|+..++.......+ +..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 344445555556666666666666666644 4333 33333333333323466777776666554332 4566777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQ--- 423 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--- 423 (540)
.+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|++.++.+.+.+.. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 7888888888888888888753 346778888888888888888888888888876433 66677766666555444
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHh--------
Q 042609 424 ---MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ-PNVDEYNKLIQSLCLK-------- 491 (540)
Q Consensus 424 ---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~-------- 491 (540)
+++|...+...++.. +-+...|+.+...+... ..+++.+.++...+.... .+...+..+...|...
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 678888888877764 34667777666655443 456777777776643222 2344555555554311
Q ss_pred CCCHHHHHHHHHHHHH
Q 042609 492 ALDWRTAEKLLEDMRL 507 (540)
Q Consensus 492 ~g~~~~A~~l~~~m~~ 507 (540)
...+++|.++++.+..
T Consensus 277 ~~~~~ka~~l~~~l~~ 292 (315)
T d2h6fa1 277 EDILNKALELCEILAK 292 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 1224556666655543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=8e-08 Score=86.57 Aligned_cols=126 Identities=13% Similarity=-0.089 Sum_probs=87.8
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
.+...+.+.|++++|...|++..+..+. ++.+|+.+...|.+.|++++|+..|++..+.. +-+..++..+..++
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCC-----CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 3444666778888888888888887765 77888888888888888888888888887754 34566777777888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
...|++++|...++..++.. +.+......+...+.+.+..+.+..+......
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 88888888888888877754 23444444444445555555555555554444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=1.9e-08 Score=94.88 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=128.9
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK----------LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
.++|..+++.+.+..+. +...|+..-..+.. .|++++|+.+|+...+.. +.+...|..+..++.
T Consensus 45 ~~~al~~~~~~l~~~P~-----~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 45 DESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp SHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 36788888877776665 56666554433222 223455555555554432 334444444444444
Q ss_pred hCCC--hhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 244 RRKI--FDWAWSVCEKMIETGSLPDSEKVG-KIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 244 ~~~~--~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
..++ +++|...+..+++... ++...+. .....+...|..++|
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A---------------------------------- 163 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE---------------------------------- 163 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH----------------------------------
T ss_pred HhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH----------------------------------
Confidence 4332 4455555555544321 2233222 222333344444444
Q ss_pred HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
+..++....... -+...|+.+...+.+.|++++|...+....+. .|+ ...+...+...+..+++...+....
T Consensus 164 --l~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 164 --LAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp --HHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred --HHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 444444443322 13334444455555555554444333322221 011 1112233444556666666666655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 401 SRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE 480 (540)
Q Consensus 401 ~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 480 (540)
... .++...+..+...+...|+.++|...+.+..+.. +-+..+|..+...|...|+.++|.+.+++..+. .|+...
T Consensus 236 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~ 311 (334)
T d1dcea1 236 LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAA 311 (334)
T ss_dssp HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHH
T ss_pred HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHH
Confidence 542 2234445556666666677777777777666553 223456666777777777777777777777754 454333
Q ss_pred H
Q 042609 481 Y 481 (540)
Q Consensus 481 ~ 481 (540)
|
T Consensus 312 y 312 (334)
T d1dcea1 312 Y 312 (334)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=4.4e-08 Score=92.23 Aligned_cols=225 Identities=6% Similarity=-0.077 Sum_probs=147.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CchHHHHHHHHHHhHhccCCCCcccHH-HHHHHHHcCCCHHH
Q 042609 279 KGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE-DETVKLALDMLDDFSGEARKYAIKPFS-SVIRSLCRMKDVHG 356 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~ 356 (540)
..|.+++|...++...+.+ +-+...|..+...+... .+++++|...+..+.+.... +...+. .....+...+..++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 3444555666666655543 12233333333333222 13466777777776654322 233333 34456677899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
|...++.+....+ -+...|+.+...+.+.|++++|...+....+. .|+ ...+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999999987643 47888999999999999998887666543332 111 12233445666777788888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHH
Q 042609 437 NHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGI 515 (540)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 515 (540)
.. +++...+..+...+...|+.++|...+.+..+.. |+ ...+..+...+. +.|++++|++.+++..+. .|+..
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~-~~~~~~eA~~~~~~ai~l--dP~~~ 310 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALD-PLLYEKETLQYFSTLKAV--DPMRA 310 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHC-TGGGHHHHHHHHHHHHHH--CGGGH
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH--CcccH
Confidence 64 3455667777888888999999999999888653 43 344555555554 889999999999999885 56544
Q ss_pred HH
Q 042609 516 TR 517 (540)
Q Consensus 516 t~ 517 (540)
.|
T Consensus 311 ~y 312 (334)
T d1dcea1 311 AY 312 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=1.5e-06 Score=77.85 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+|..+...|...|++++|.+.|++.+.
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.1e-05 Score=68.40 Aligned_cols=122 Identities=14% Similarity=0.051 Sum_probs=96.7
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.+...++++.|.+.|+.+.. |+..+|..+...|...|++++|++.|++..+.+ +-+...|..+..++.+.|
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~--------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQD--------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhc
Confidence 44567899999988875422 578889999999999999999999999998875 567888999999999999
Q ss_pred ChhHHHHHHHHHHHCCC------------C--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 247 IFDWAWSVCEKMIETGS------------L--PD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~------------~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
++++|...|++.+.... . .+ ..++..+..+|.+.|++++|.+.|+......
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999998875311 0 11 3556677778889999999999988877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=1.8e-05 Score=72.03 Aligned_cols=205 Identities=18% Similarity=0.087 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CC-CCCHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDY----GCVA-NQETYYFTIEALSRRKIFDWAWSVCEKMIET----GS-LPDSEK 269 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~ 269 (540)
|......|...|++++|++.|.+..+. +-++ -..+|..+..+|.+.|++++|...++...+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444455677777888888877776442 1111 1345666777777777777777776655432 10 001223
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHH
Q 042609 270 VGKIISWFC-KGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSL 348 (540)
Q Consensus 270 ~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 348 (540)
+..+...|. ..|++++|...|++..+.. -.. +.... ...++..+...+
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~---------------~~~-~~~~~---------------~~~~~~~la~~~ 168 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWY---------------AQD-QSVAL---------------SNKCFIKCADLK 168 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------------HHT-TCHHH---------------HHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHH---------------Hhc-Cchhh---------------hhhHHHHHHHHH
Confidence 334444443 2466666666555543210 000 10000 012245555666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGN------AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK-PD---VYTYTGLMSGY 418 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---~~t~~~ll~~~ 418 (540)
...|++++|...|++.......... ..+..++..+...|+++.|...+++..+.... ++ ......++.+|
T Consensus 169 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~ 248 (290)
T d1qqea_ 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHH
Confidence 6666666666666666543211110 11223334455566677776666666544211 11 22344555555
Q ss_pred Hh--cCCHHHHHHHHHHHH
Q 042609 419 AN--GGQMEEACEILNEAK 435 (540)
Q Consensus 419 ~~--~g~~~~A~~~~~~m~ 435 (540)
-. .+.+++|...|+.+.
T Consensus 249 ~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 249 NEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HTTCTTTHHHHHHHHTTSS
T ss_pred HhcCHHHHHHHHHHHHHHh
Confidence 44 234666666665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=3.5e-05 Score=70.14 Aligned_cols=171 Identities=12% Similarity=-0.073 Sum_probs=112.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CCCHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDY----GC-VANQET 234 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~-~p~~~t 234 (540)
|......+-..+++++|...|.+..+...+.+..++ ..+|+.+...|.+.|++++|++.|++..+. |- .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 455666777889999999999988886554322222 468999999999999999999999987542 21 112445
Q ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----H
Q 042609 235 YYFTIEALS-RRKIFDWAWSVCEKMIET----GSLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-----S 303 (540)
Q Consensus 235 ~~~ll~~~~-~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~ 303 (540)
+..+...|- ..|++++|...+.+..+. +..+ -..++..+...|.+.|++++|...|+++......... .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666666664 469999999999987643 2111 1345777888899999999999999887764321111 0
Q ss_pred H-HHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 304 V-VAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 304 ~-~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
. +......+... |+++.|...+++..+.
T Consensus 200 ~~~~~~~~~~l~~-~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 200 DYFLKKGLCQLAA-TDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence 1 11112222233 6666666666665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.1e-05 Score=66.66 Aligned_cols=82 Identities=21% Similarity=0.148 Sum_probs=37.4
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
...|+++.|++.|.++ .+|+..+|..+-.+|.+.|++++|++.|++..+.... +...|..+-.+|.+.|++++|.
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 3444444544444432 2334444444444455555555555555444443211 3444444444444555555554
Q ss_pred HHHHHHH
Q 042609 429 EILNEAK 435 (540)
Q Consensus 429 ~~~~~m~ 435 (540)
..|++..
T Consensus 91 ~~~~kAl 97 (192)
T d1hh8a_ 91 KDLKEAL 97 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.1e-05 Score=64.38 Aligned_cols=91 Identities=8% Similarity=-0.011 Sum_probs=65.4
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
+.+.+.|++++|...|+++.+..+. +...|..+...|...|++++|++.|++.++.. +-+..+|..+..++...
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHhhhccccchh-----hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 3455667777777777777777665 67777777777777777777777777776654 44566777777777777
Q ss_pred CChhHHHHHHHHHHHCC
Q 042609 246 KIFDWAWSVCEKMIETG 262 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g 262 (540)
|++++|...+++..+..
T Consensus 92 g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK 108 (159)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 77777777777777653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=3.2e-05 Score=59.49 Aligned_cols=89 Identities=16% Similarity=0.059 Sum_probs=60.5
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.+...|++++|...|+...+..+. +...|+.+..+|.+.|++++|+..|++..+.+ +.+...|..+..++...|
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLDPH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-----chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 445566777777777777666654 66677777777777777777777777776654 456666666777777777
Q ss_pred ChhHHHHHHHHHHHC
Q 042609 247 IFDWAWSVCEKMIET 261 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~ 261 (540)
++++|+..|+..++.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.18 E-value=0.0012 Score=58.48 Aligned_cols=230 Identities=15% Similarity=0.015 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR----RKIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
|+..+..|...+-+.+++++|++.|++..+.| |...+..|-..|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566667677777788888888888877765 44555555555554 456777777777766654 223333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHH
Q 042609 272 KIISWFCK----GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347 (540)
Q Consensus 272 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 347 (540)
.|...+.. ..+.+.|...++...+.|. ... ...+...+.. .
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a-~~~l~~~~~~--------------------------------~ 119 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEG-CASLGGIYHD--------------------------------G 119 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH-HHHHHHHHHH--------------------------------C
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh--hhH-HHhhcccccC--------------------------------C
Confidence 33333332 3455666666665555441 111 1111001100 0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN--- 420 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--- 420 (540)
.........+...+...... .+...+..|...|.. ..+...+...++...+.| +......+-..|..
T Consensus 120 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~ 193 (265)
T d1ouva_ 120 KVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEG 193 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCS
T ss_pred CcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcc
Confidence 00122333444444444332 233444444444443 234445555555555543 34444444444443
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 042609 421 -GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 421 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 475 (540)
..+.++|...|++..+.| ++..+..|...|.+ ..+.++|.+.|++..+.|..
T Consensus 194 ~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 194 ATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 457788888888877776 55566666666654 33677788888887776643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.17 E-value=0.0017 Score=57.42 Aligned_cols=149 Identities=15% Similarity=0.020 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 042609 351 MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN----GG 422 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g 422 (540)
..+.+.|...++...+.|.. .....+...+.. ......+...+...... .+...+..|...|.. ..
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCC
T ss_pred chhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCccc
Confidence 45566777777777665432 222223223332 34566677777776665 366777778777775 56
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCC
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALD 494 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~ 494 (540)
+...+...++...+.| +......|...|.. ..+.++|...|.+..+.| +...+..|-..|. + ..+
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~-~G~g~~~n 233 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY-NGEGVTRN 233 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-TTSSSSCC
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH-cCCCCccC
Confidence 7888999999988876 66666667666665 568999999999999887 4555555555553 3 337
Q ss_pred HHHHHHHHHHHHHCCCCC
Q 042609 495 WRTAEKLLEDMRLKGLHL 512 (540)
Q Consensus 495 ~~~A~~l~~~m~~~g~~p 512 (540)
.++|.++|++..+.|..+
T Consensus 234 ~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 234 EKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp STTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHCcCHH
Confidence 899999999999998765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2.9e-05 Score=59.80 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=86.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
.-...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..+...++.+ +.+...|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 34566888999999999999998865 6678889999999999999999999999999875 467888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH
Q 042609 282 KAKEAHVVYTLAREKKMYPPQSVV 305 (540)
Q Consensus 282 ~~~~A~~~~~~m~~~~~~p~~~~~ 305 (540)
++++|...|+...+.. |+...+
T Consensus 86 ~~~~A~~~~~~a~~~~--p~~~~~ 107 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE--ANNPQL 107 (117)
T ss_dssp CHHHHHHHHHHHHTTC--TTCHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHH
Confidence 9999999999988754 554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.0011 Score=60.51 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=66.1
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.|.+.|.++.|..++..+.. |..++..|.+.++++.|.+++.+. -+..+|..+..+|.+..
T Consensus 23 ~c~~~~lye~A~~lY~~~~d-------------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNVSN-------------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ------CTTTHHHHHHHTTC-------------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHhCCC-------------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 33355666666666653322 556666666666666666666543 24456666666666665
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 315 (540)
....+ .+...+...+......++..|-..|.+++...+++...... ..+...++.++..+++.
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 54432 22222333455555566666666777777666666554321 34455555566655554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=2.8e-05 Score=66.19 Aligned_cols=99 Identities=11% Similarity=-0.108 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
|+...+......|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 456666666777777777777777777776654 4566677777777777777777777777776542 23466677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042609 275 SWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~ 295 (540)
.+|.+.|++++|...|+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=3.5e-05 Score=65.59 Aligned_cols=95 Identities=7% Similarity=-0.014 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+......+.+.|++++|...|+...+..+. +...|+.+..+|.+.|++++|+..|++..+.. +-+..+|..+..
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-----~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 334456778899999999999999998876 89999999999999999999999999998764 446889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 042609 241 ALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~ 261 (540)
++.+.|++++|...|++.++.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999988763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00013 Score=59.41 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
+...-..|.+.|++++|+..|++..+... -+...|..+..+|...|++++|...|+++++.. +-+...|..+..+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 34445667788888888888888877643 267778888888888888888888888888764 3456788888888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 042609 456 LEEFDCALKLLNEMKDV 472 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~ 472 (540)
.|++++|...+++....
T Consensus 91 ~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV 107 (159)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 88888888888888765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.97 E-value=3.1e-05 Score=59.02 Aligned_cols=85 Identities=9% Similarity=-0.078 Sum_probs=47.3
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI 247 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (540)
+.+.|++++|...|++..+..+. ++.+|..+...+.+.|++++|+..|++..+.. +.+..+|..+...|...|+
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccc-----cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 34455566666666655555443 55566666666666666666666666555443 3345555555555555555
Q ss_pred hhHHHHHHHHH
Q 042609 248 FDWAWSVCEKM 258 (540)
Q Consensus 248 ~~~a~~~~~~m 258 (540)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3.2e-05 Score=59.90 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCC-HHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKG---KAAFEVFNKFGDYGCVAN-QETYYF 237 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~g~~p~-~~t~~~ 237 (540)
..+++.+...+++++|.+.|+......+. ++.++..+..++.+.++. ++|+.+|+++...+..|+ ..+|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-----~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 34555555555555566666655555543 555555555555543332 345555555554332222 124444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
+..+|.+.|++++|.+.|+++++.
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 555555555555555555555553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=6.2e-05 Score=58.19 Aligned_cols=108 Identities=11% Similarity=0.007 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI---FDWAWSVCEKMIETGSLPD-SEKVGKIISW 276 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 276 (540)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.++++++..+..|+ ..++..|..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456778888999999999999999876 6788899999999887654 5579999999987654343 3467889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISS 311 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 311 (540)
|.+.|++++|.+.|+++.+.+ |+..-...+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~--P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE--PQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 999999999999999999855 776665555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.85 E-value=6.7e-05 Score=57.11 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=38.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 383 YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCA 462 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 462 (540)
+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...|++..+.. +-+...|..+...|...|++++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHH
Confidence 44444444444444444443211 34444444444444455555555554444432 22344444444555555555555
Q ss_pred HHHHHH
Q 042609 463 LKLLNE 468 (540)
Q Consensus 463 ~~~~~~ 468 (540)
.+.+++
T Consensus 104 ~~~l~~ 109 (112)
T d1hxia_ 104 LASLRA 109 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.0013 Score=53.78 Aligned_cols=97 Identities=18% Similarity=0.017 Sum_probs=50.8
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT----------VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQE 233 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~ 233 (540)
....+.+.|++++|...|....+..+.....-+ ..+|+.+..+|.+.|++++|+..+++.++.. +.+..
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~ 97 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK 97 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchh
Confidence 344566778888888888877765443211101 1334444444555555555555555554433 23444
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 234 TYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 234 t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
+|..+..++...|++++|...|+..++.
T Consensus 98 a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 98 GLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4555555555555555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00053 Score=53.29 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=54.9
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC----HHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG--CVAN----QETYYF 237 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g--~~p~----~~t~~~ 237 (540)
+...+...|++++|...|+...+..+. +..+|..+..+|.+.|++++|++.|+++++.. .... ..+|..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555667777777777777666654 66677777777777777777777777665421 0000 124455
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
+...+...+++++|.+.|...+.
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 55555566666666666655544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0013 Score=53.94 Aligned_cols=63 Identities=11% Similarity=-0.025 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+|+.+..+|.+.|++++|...++..++.. +-++.+|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 356777788888899999999998888864 347788888888888999999999999988864
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00054 Score=53.25 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC-----HHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSL-PD-----SEKVG 271 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~-----~~~~~ 271 (540)
..+..+...|...|++++|+..|++.++.+ +.+...|..+..+|.+.|++++|.+.++++++.... +. ..+|.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 346677788999999999999999998875 567889999999999999999999999998764210 11 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.+...+...+++++|...|+......
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 78888899999999999998876543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.54 E-value=0.0026 Score=50.94 Aligned_cols=65 Identities=15% Similarity=0.024 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.+|..+..+|.+.|++++|++.+++.++.. +.+...|..+..++. ..|++++|+..|++..+...
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHST
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 456667777888888888888888877553 236677777777766 67788888888888777543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.46 E-value=0.0023 Score=51.30 Aligned_cols=105 Identities=13% Similarity=-0.036 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCC----CCCC-----------HHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYG----CVAN-----------QETYYFTIEALSRRKIFDWAWSVCEKMIETG 262 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g----~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 262 (540)
..+..-...+.+.|++++|+..|.+....- ..++ ..+|+.+..+|.+.|++++|+..+...++..
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 345555566677778888887777765421 0111 2356667777888888888888888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042609 263 SLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVV 305 (540)
Q Consensus 263 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 305 (540)
+.+..+|..+..+|...|++++|...|+...+.+ |+....
T Consensus 98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~ 137 (153)
T d2fbna1 98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDI 137 (153)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHH
T ss_pred -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 3567788888888888888888888888887754 554433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.002 Score=53.11 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HCCCCCcHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR-----LKGLHLNGITRA 518 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~~ 518 (540)
..+..+...+.+.|++++|...++++.... +-+...|..++.+|. +.|++.+|++.|+++. +.|+.|...|..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYY-LSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 456778888888899999999988888654 337777888888877 8888899988888874 358888877766
Q ss_pred HHHH
Q 042609 519 LIRA 522 (540)
Q Consensus 519 ll~a 522 (540)
+...
T Consensus 146 l~~~ 149 (179)
T d2ff4a2 146 LNER 149 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.39 E-value=0.0019 Score=52.68 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=50.0
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCC-----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEK-----------GVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYY 236 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~ 236 (540)
+...|++++|...|.+..+...... ...+...|+.+...|.+.|++++|+..|++.++.. +.+..+|.
T Consensus 37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~ 115 (169)
T d1ihga1 37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALY 115 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHH
Confidence 3455677777666655433211000 00133445555555666666666666666665543 34555566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
.+..++.+.|++++|.+.|+..++.
T Consensus 116 ~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 116 RRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=0.0021 Score=53.02 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=83.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 344 VIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQ 423 (540)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 423 (540)
........|++++|...|.+..... +... +......+-+...-..+... ....+..+...+.+.|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3345677888888888888877541 1110 00001111111111222221 34567788889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 042609 424 MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK-----DVGVQPNVDE 480 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 480 (540)
+++|...++++.+.. +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+
T Consensus 83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999998875 4578899999999999999999999999874 4688888765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.24 E-value=0.0084 Score=48.61 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
..|+.+-.+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++|...|+++.+. .|+.......+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l 138 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQI 138 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 356667777888888888888888888764 457788888888888888899998888888865 45444443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.23 E-value=0.0088 Score=48.48 Aligned_cols=57 Identities=9% Similarity=-0.015 Sum_probs=26.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++|...|+.+.+
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444432 23344444444445555555555555544444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.21 E-value=0.0023 Score=52.20 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
...|..+..+|.+.|++++|+..+.++++.. +-+...|..+..+|.+.|++++|...|++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4456666667777777777777777777654 345667777777777777777777777777754
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.21 E-value=0.071 Score=48.12 Aligned_cols=268 Identities=8% Similarity=0.028 Sum_probs=158.0
Q ss_pred cchhhhHhhcccccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 145 LGENLVCFFKWVTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 145 ~~~~ll~~~~w~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
....+..+|. .-..|..++..+.+.++++.|...+.+.. +..+|..+...+.......-| .+.
T Consensus 29 lye~A~~lY~--~~~d~~rl~~~~v~l~~~~~avd~~~k~~----------~~~~~k~~~~~l~~~~e~~la-----~i~ 91 (336)
T d1b89a_ 29 MYDAAKLLYN--NVSNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVDGKEFRLA-----QMC 91 (336)
T ss_dssp CTTTHHHHHH--HTTCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHHHHHHHHTTCHHHH-----HHT
T ss_pred CHHHHHHHHH--hCCCHHHHHHHHHhhccHHHHHHHHHHcC----------CHHHHHHHHHHHHhCcHHHHH-----HHH
Confidence 3456666772 44667888888888888888877765331 678999999999988776553 233
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSV 304 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 304 (540)
..+...+......++..|-..|.+++...+++..... -..+...++-++..|++.+. .++.+.++.....-+.
T Consensus 92 ~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~----~kl~e~l~~~s~~y~~-- 164 (336)
T d1b89a_ 92 GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP----QKMREHLELFWSRVNI-- 164 (336)
T ss_dssp TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH----HHHHHHHHHHSTTSCH--
T ss_pred HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh----HHHHHHHHhccccCCH--
Confidence 3344567777788999999999999999999987643 25677889999999998753 2333434332211111
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhHhcc--------CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 305 VAFLISSLCQEDETVKLALDMLDDFSGEA--------RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF 376 (540)
Q Consensus 305 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 376 (540)
..++.. |...+.+.++.-++..+.... ..++..-....+..+.+..+. ..|
T Consensus 165 -~k~~~~-c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~-------------------e~~ 223 (336)
T d1b89a_ 165 -PKVLRA-AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV-------------------ELY 223 (336)
T ss_dssp -HHHHHH-HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSST-------------------HHH
T ss_pred -HHHHHH-HHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCCh-------------------HHH
Confidence 112222 333355555555554433210 111111122222223333332 333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 377 NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL 456 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (540)
-.+|..|... +.+-...++..+... + | -..++..+.+.+++.-....++.....+ +....++|...|...
T Consensus 224 ~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d---~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~ 293 (336)
T d1b89a_ 224 YRAIQFYLEF-KPLLLNDLLMVLSPR-L--D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITE 293 (336)
T ss_dssp HHHHHHHHHH-CGGGHHHHHHHHGGG-C--C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CHHHHHHHHHHhccC-C--C---HHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCc
Confidence 3444444432 233333333333322 1 2 1345555667777777778887776655 457889999999999
Q ss_pred CCHHHHHHHHH
Q 042609 457 EEFDCALKLLN 467 (540)
Q Consensus 457 g~~~~A~~~~~ 467 (540)
++++.-.+..+
T Consensus 294 ~d~~~l~~~i~ 304 (336)
T d1b89a_ 294 EDYQALRTSID 304 (336)
T ss_dssp TCHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 98766444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.13 E-value=0.0014 Score=52.07 Aligned_cols=71 Identities=8% Similarity=-0.055 Sum_probs=51.4
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC----------ChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG----------KGKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
+.+.+++|...|+...+..+. +..+|..+...|...+ .+++|+..|++..+.. +.+..+|..+.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-----~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG 82 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-----chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHH
Confidence 345678999999999998886 8899999988887543 4466777777776654 44566676666
Q ss_pred HHHHhCC
Q 042609 240 EALSRRK 246 (540)
Q Consensus 240 ~~~~~~~ 246 (540)
.+|...|
T Consensus 83 ~~y~~~g 89 (145)
T d1zu2a1 83 NAYTSFA 89 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 6665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00012 Score=71.91 Aligned_cols=110 Identities=9% Similarity=-0.101 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
+..+...+.+.|+.++|...+...... .+ ..++..+...+...|++++|...|++..+... -+...|+.|...|..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 444444455555555555554443321 11 23444555566666666666666666555421 134566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
.|+..+|...|.+.+... .|-..++..|...|.+
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666666666666666543 3455566666555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.11 E-value=0.00036 Score=61.82 Aligned_cols=123 Identities=9% Similarity=-0.122 Sum_probs=79.3
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCC
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-QETYYFTIEALSRRK 246 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-~~t~~~ll~~~~~~~ 246 (540)
..+.|++++|...++...+..+. |...+..+...|+..|++++|++.|+...+.. |+ ...+..+...+...+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-----d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-----DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQ 78 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 34678999999999999888876 89999999999999999999999999998764 43 444444433333222
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
..+++..-.......+-.++...+......+.+.|+.++|...++++.+..
T Consensus 79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222111110000001111223334445566778888999988888876643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00033 Score=68.71 Aligned_cols=77 Identities=12% Similarity=0.004 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
+..+...+...|++++|...|++..+.. +-+...|+.|...|...|+..+|...|.+..... .|...++..|...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 4444455555555555555555555432 2233455555555555555555555555544432 234444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.93 E-value=0.0024 Score=50.62 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE-----------EFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK 491 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 491 (540)
.+++|+..|++.++.. +-+..+|..+..+|...| .+++|.+.|++..+. .|+...|...+.. +
T Consensus 56 ~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~-~-- 129 (145)
T d1zu2a1 56 MIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM-T-- 129 (145)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHH-H--
Confidence 3456777777766653 335566666666665544 357788888888764 5777777665533 2
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q 042609 492 ALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 492 ~g~~~~A~~l~~~m~~~g~ 510 (540)
.+|.+++.+..+.|+
T Consensus 130 ----~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 ----AKAPQLHAEAYKQGL 144 (145)
T ss_dssp ----HTHHHHHHHHHHSSS
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 456677777776664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.86 E-value=0.00093 Score=59.08 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=30.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 350 RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
+.|++++|...+++.++.. +.|...+..+...|+..|++++|...|+...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666666666665542 235555666666666666666666666665544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0048 Score=44.60 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=53.0
Q ss_pred ccccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 042609 155 WVTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEK-GVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ 232 (540)
Q Consensus 155 w~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~ 232 (540)
|++...+-.+...+.+.|++++|...|++..+..+... ..++ ..+++.|..+|.+.|++++|+..|++.++.. |-+.
T Consensus 2 ~Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~ 80 (95)
T d1tjca_ 2 FLTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQ 80 (95)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCH
Confidence 34555555666677778888888888877766554321 1122 4577778888888888888888888877654 2234
Q ss_pred HHHHH
Q 042609 233 ETYYF 237 (540)
Q Consensus 233 ~t~~~ 237 (540)
.+++.
T Consensus 81 ~a~~N 85 (95)
T d1tjca_ 81 RANGN 85 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.61 E-value=0.018 Score=45.87 Aligned_cols=98 Identities=16% Similarity=-0.013 Sum_probs=65.2
Q ss_pred HHHHHH--HHHHHhcCChHHHHHHHHHHhhCCC-CC----------CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC---
Q 042609 198 EILNEL--IALFSKLGKGKAAFEVFNKFGDYGC-VA----------NQETYYFTIEALSRRKIFDWAWSVCEKMIET--- 261 (540)
Q Consensus 198 ~~~~~l--i~~~~~~g~~~~A~~~f~~m~~~g~-~p----------~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--- 261 (540)
.+|+.+ ...+...|++++|++.|++..+..- .| ....|+.+..+|.+.|++++|...+++.++.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 455555 3445567888888888888754210 01 1356777788888888888888877777642
Q ss_pred --CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 262 --GSLPD-----SEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 262 --g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
...++ ...++.+..+|...|++++|...|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 22466778888899999999888887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.60 E-value=0.027 Score=44.75 Aligned_cols=95 Identities=16% Similarity=-0.036 Sum_probs=73.1
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CCCCC--
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVL-------TVEILNELIALFSKLGKGKAAFEVFNKFGDY-----GCVAN-- 231 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g~~p~-- 231 (540)
......|++++|...|++..++.+...... ...+|+.+..+|.+.|++++|++.+++..+. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 355667999999999999988776532211 1468999999999999999999999987642 11222
Q ss_pred ---HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 232 ---QETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 232 ---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
...|+.+..+|...|++++|...|++.++
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788999999999999999998765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.26 E-value=0.33 Score=36.79 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHC
Q 042609 424 MEEACEILNEAKKN 437 (540)
Q Consensus 424 ~~~A~~~~~~m~~~ 437 (540)
.++|.++|++..+.
T Consensus 75 ~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 75 LRKAAQYYSKACGL 88 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHhhhhcc
Confidence 34444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.12 E-value=0.4 Score=35.35 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
.+...+....+.|+-++-.++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+..+.|++
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 34455666677777777777777766654 677777777777787788777777777777777653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.01 E-value=0.45 Score=35.96 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCAL 463 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 463 (540)
++++|.++|++..+.|.. . ....|. .....+.++|...+++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 455666666666665422 1 122221 233457888999999888877 56666666666654 45789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 042609 464 KLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 464 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A~~l~~~m~~~g~~ 511 (540)
++|++..+.| +......|-..|. + ..+.++|.++|++..+.|..
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~-~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQY-AGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhccC---cchHHHHHHHHHH-cCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9999999876 3444444544444 3 35799999999999888754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.27 Score=34.70 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNH-----SRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
+-.+-..+.+.|++++|...|++..+.. ..++ ..+++.|..+|.+.|++++|...++++++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3345555556666666666666554321 1111 345555666666666666666666665543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.48 E-value=1.4 Score=32.38 Aligned_cols=140 Identities=13% Similarity=0.129 Sum_probs=79.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (540)
+.-.|.+++..++..+.... .+..-+|++|-..... -+-+...+.++.. |.-.|. ..+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt-~dC~~v~~~Ld~I---G~~FDl----------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLES-IDCRYMFQVLDKI---GSYFDL----------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHH-CCHHHHHHHHHHH---GGGSCG----------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccc-cchHHHHHHHHHH---hhhcCc----------hhhhcHHH
Confidence 34456777777777666542 2355566666555444 3444444444443 222222 13344444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
....+-.+ ..+...++..++.+.+.|+-++-.++++.+.+. -.|+....-.+..+|.+.|...++-+++.+.-+
T Consensus 75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44433332 223445556667777777777777777776553 355666777777777777777777777777777
Q ss_pred CCC
Q 042609 437 NHS 439 (540)
Q Consensus 437 ~g~ 439 (540)
.|+
T Consensus 149 ~G~ 151 (161)
T d1wy6a1 149 KGE 151 (161)
T ss_dssp TTC
T ss_pred HhH
Confidence 764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.05 E-value=1.5 Score=30.46 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 214 KAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 214 ~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
-++.+-++.+....+.|++......+++|-+.+++..|.++++-.+..
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345555666666666777777777777777777777777777766543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.81 E-value=4.1 Score=28.25 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
+.-++.+-++.+......|+.....+.+.+|.+.+++..|.++|+-++.+ +.++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 45556666666666677777777777777777777777777777776643 2223445555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.76 E-value=5.6 Score=29.06 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 424 MEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+++|+.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++
T Consensus 54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445555555555432 1121 3444444555555555555555555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.18 E-value=7.4 Score=28.39 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 248 FDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 248 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
+++|+.+++...+.+. .+ ...+..|.-+|.+.|++++|.+.++.+.+.
T Consensus 54 ~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4455555555554321 12 233344444555666666666666655553
|