Citrus Sinensis ID: 042647

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
PRSHHQIRSNYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKKKVC
Secondary Structure (PSIPRED)
cccccccccccEEEEEEcEEEEEEEEEccHHcccccEEEEEEEEEEEEEEEcccccEEEEEEccccccccEEEEEEccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccEEEEEEcEEEEEEEccccHHHHHHHHHHHHHHHHHHEEEccccccEEEEEEEccccccEEEEEEcccHHHHccccHEEcHHccc
Coil and Loop (DISEMBL)
prshhqirsNYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQIsrnqdgnftGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKKKVC
Flexible Loop (DISEMBL)
prshhqirsnYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKKKVC
Low Complexity Region (SEG)
PRSHHQIRSNYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKKKVC
Disordered region (IsUnstruct)
*******RSNYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITK****
Disordered Region (DISOPRED)
*********NYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKKKVC
Disordered Region (DISEMBL)
********SNYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKKKVC
Disordered Region (DISPRO)
****HQIRSNYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKK*VC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PRSHHQIRSNYKIYLTYGLTFVSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYLITKKKVC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
O13775	716	Probable glutamate--tRNA	yes	no	0.557	0.074	0.435	6e-05
Q54KB8	764	Probable glutamate--tRNA	yes	no	0.557	0.069	0.444	0.0001

>sp|O13775|SYEC_SCHPO Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.15c PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFTGV---VHLEG-YKTTVLKLTWLLEI-----IELVGFDYLITKK 92
           GNA V +I+R+  G  T +   +HL+G +K T  K+TWL +      ++LV FDYLITK 
Sbjct: 583 GNAYVREINRDASGKVTSLKLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYLITKD 642

Query: 93  KV 94
           K+
Sbjct: 643 KL 644

Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7

>sp|Q54KB8|SYEC_DICDI Probable glutamate--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=gluS PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 10/63 (15%)

Query: 42  GNAIVEQISRNQDGN---FTGVVHLEG-YKTTVLKLTWLLE------IIELVGFDYLITK 91
           GNAIVE + RN++G+    TG +HLEG  K T  KL+WL         + L  +DY+ITK
Sbjct: 602 GNAIVETLQRNENGDVVSMTGKLHLEGDVKKTDKKLSWLSSDCADTVTVVLQDYDYIITK 661

Query: 92  KKV 94
            K+
Sbjct: 662 PKL 664

Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
356534931	733	PREDICTED: probable glutamyl-tRNA synthe	0.557	0.072	0.629	5e-10
356575275	732	PREDICTED: probable glutamyl-tRNA synthe	0.557	0.072	0.629	1e-09
357441991	735	Bifunctional aminoacyl-tRNA synthetase [	0.557	0.072	0.596	1e-09
359487602	736	PREDICTED: probable glutamyl-tRNA synthe	0.557	0.072	0.596	5e-09
296089869	276	unnamed protein product [Vitis vinifera]	0.557	0.192	0.596	1e-08
224124284	728	predicted protein [Populus trichocarpa]	0.557	0.072	0.596	1e-08
147838425	736	hypothetical protein VITISV_020288 [Viti	0.557	0.072	0.580	2e-08
224122796	427	predicted protein [Populus trichocarpa]	0.557	0.124	0.580	5e-08
449435593	729	PREDICTED: probable glutamate--tRNA liga	0.557	0.072	0.564	1e-07
449525786	682	PREDICTED: LOW QUALITY PROTEIN: probable	0.557	0.077	0.564	2e-07

>gi|356534931|ref|XP_003536004.1| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 46/62 (74%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGN---FTGVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAIV++I ++QDGN    +GV+HLEG  KTT LKLTWL EI ELV      FDYLITKK
Sbjct: 601 GNAIVKEIEKDQDGNIIGLSGVLHLEGSVKTTKLKLTWLPEIDELVSLTLVEFDYLITKK 660

Query: 93  KV 94
           K+
Sbjct: 661 KL 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575275|ref|XP_003555767.1| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 46/62 (74%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFTGV---VHLEG-YKTTVLKLTWLLEIIE-----LVGFDYLITKK 92
           GNAIV++I ++QDGN TG+   +HLEG  KTT LKLTWL EI E     LV FDYLITKK
Sbjct: 601 GNAIVKEIEKDQDGNITGLSGALHLEGSVKTTKLKLTWLPEIDELVCLTLVEFDYLITKK 660

Query: 93  KV 94
           K+
Sbjct: 661 KL 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441991|ref|XP_003591273.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] gi|355480321|gb|AES61524.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 46/62 (74%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNA+V+++ ++QDGN T   GV+HLEG  KTT LKLTWL E+ ELV      FDYLITKK
Sbjct: 603 GNAVVKEVEKDQDGNVTGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYLITKK 662

Query: 93  KV 94
           K+
Sbjct: 663 KL 664

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487602|ref|XP_002278667.2| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like isoform 1 [Vitis vinifera]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 44/62 (70%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAI+++I ++QDGN T   GV+HLEG  K T LKLTWL E  ELV      FDYLITKK
Sbjct: 607 GNAIIKEIRKDQDGNITQLIGVLHLEGSVKATKLKLTWLPETSELVNLSLMEFDYLITKK 666

Query: 93  KV 94
           K+
Sbjct: 667 KL 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089869|emb|CBI39688.3| unnamed protein product [Vitis vinifera]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 44/62 (70%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAI+++I ++QDGN T   GV+HLEG  K T LKLTWL E  ELV      FDYLITKK
Sbjct: 147 GNAIIKEIRKDQDGNITQLIGVLHLEGSVKATKLKLTWLPETSELVNLSLMEFDYLITKK 206

Query: 93  KV 94
           K+
Sbjct: 207 KL 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124284|ref|XP_002329985.1| predicted protein [Populus trichocarpa] gi|222871410|gb|EEF08541.1| predicted protein [Populus trichocarpa]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAIV++I ++Q+GN T   GV+HLEG  KTT LKLTWL +  ELV      FDYLITKK
Sbjct: 596 GNAIVKEIEKDQNGNVTRLSGVLHLEGSVKTTKLKLTWLPDTSELVNLTLVDFDYLITKK 655

Query: 93  KV 94
           K+
Sbjct: 656 KL 657

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838425|emb|CAN76587.1| hypothetical protein VITISV_020288 [Vitis vinifera]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGN---FTGVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAI+++I ++QDGN     GV+HLEG  K T LKLTWL E  ELV      FDYLITKK
Sbjct: 607 GNAIIKEIRKDQDGNIMQLIGVLHLEGSVKATKLKLTWLPETSELVNLSLMEFDYLITKK 666

Query: 93  KV 94
           K+
Sbjct: 667 KL 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122796|ref|XP_002318915.1| predicted protein [Populus trichocarpa] gi|222857291|gb|EEE94838.1| predicted protein [Populus trichocarpa]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAIV++I ++QDG  T   GV+HLEG  KTT LK TWL +  ELV      FDYLITKK
Sbjct: 289 GNAIVKEIEKDQDGKVTHLSGVLHLEGSVKTTKLKFTWLPDTSELVNLTLVDFDYLITKK 348

Query: 93  KV 94
           K+
Sbjct: 349 KL 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435593|ref|XP_004135579.1| PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Cucumis sativus]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDG---NFTGVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAIV+ I ++QDG     +G++HLEG  KTT LK+TWL EI ELV      +DYLITKK
Sbjct: 597 GNAIVKGIEKDQDGFVKQLSGILHLEGSVKTTKLKITWLPEIKELVTLSLMEYDYLITKK 656

Query: 93  KV 94
           K+
Sbjct: 657 KL 658

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525786|ref|XP_004169897.1| PREDICTED: LOW QUALITY PROTEIN: probable glutamate--tRNA ligase, cytoplasmic-like, partial [Cucumis sativus]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDG---NFTGVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAIV+ I ++QDG     +G++HLEG  KTT LK+TWL EI ELV      +DYLITKK
Sbjct: 550 GNAIVKGIEKDQDGFVKQLSGILHLEGSVKTTKLKITWLPEIKELVTLSLMEYDYLITKK 609

Query: 93  KV 94
           K+
Sbjct: 610 KL 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2146769	719	AT5G26710 [Arabidopsis thalian	0.557	0.073	0.532	1e-15
POMBASE|SPAC17A5.15c	716	SPAC17A5.15c "glutamate-tRNA l	0.557	0.074	0.435	3.7e-09
DICTYBASE|DDB_G0287467	764	gluS "glutamate-tRNA ligase" [	0.557	0.069	0.444	3e-08
CGD|CAL0002084	725	orf19.7057 [Candida albicans (	0.557	0.073	0.377	2.6e-06
ASPGD|ASPL0000017154	680	AN8224 [Emericella nidulans (t	0.526	0.073	0.372	6.1e-06
SGD|S000003214	708	GUS1 "Glutamyl-tRNA synthetase	0.536	0.072	0.406	0.00032

TAIR|locus:2146769 AT5G26710 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query:    42 GNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
             GNAIV++I+++++G  T   GV++L+G  KTT LKLTWL +  ELV      FDYLITKK
Sbjct:   590 GNAIVKEITKDEEGRVTALSGVLNLQGSVKTTKLKLTWLPDTNELVNLTLTEFDYLITKK 649

Query:    93 KV 94
             K+
Sbjct:   650 KL 651

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004818 "glutamate-tRNA ligase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

POMBASE|SPAC17A5.15c SPAC17A5.15c "glutamate-tRNA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 112 (44.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query:    42 GNAIVEQISRNQDGNFTGV---VHLEG-YKTTVLKLTWLLEI-----IELVGFDYLITKK 92
             GNA V +I+R+  G  T +   +HL+G +K T  K+TWL +      ++LV FDYLITK 
Sbjct:   583 GNAYVREINRDASGKVTSLKLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYLITKD 642

Query:    93 KV 94
             K+
Sbjct:   643 KL 644

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003723 "RNA binding" evidence=IEA

GO:0004818 "glutamate-tRNA ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

DICTYBASE|DDB_G0287467 gluS "glutamate-tRNA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 107 (42.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query:    42 GNAIVEQISRNQDGN---FTGVVHLEG-YKTTVLKLTWLLE------IIELVGFDYLITK 91
             GNAIVE + RN++G+    TG +HLEG  K T  KL+WL         + L  +DY+ITK
Sbjct:   602 GNAIVETLQRNENGDVVSMTGKLHLEGDVKKTDKKLSWLSSDCADTVTVVLQDYDYIITK 661

Query:    92 KKV 94
              K+
Sbjct:   662 PKL 664

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0004818 "glutamate-tRNA ligase activity" evidence=IEA;ISS

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0002084 orf19.7057 [Candida albicans (taxid:5476)]

 Score = 87 (35.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query:    42 GNAIVEQISRNQD--GNFTGVVHLEG-YKTTVLKLTWLLEI-----IELVGFDYLITKKK 93
             GN IV ++++  D   +    +HLEG ++ T  K+TWL        I++V FD+LITK K
Sbjct:   592 GNIIVSKVNKEGDIVKSVEANLHLEGDFRKTSKKITWLAYTKDKVEIDMVDFDHLITKDK 651

Query:    94 V 94
             +
Sbjct:   652 L 652

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0017102 "methionyl glutamyl tRNA synthetase complex" evidence=IEA

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=IEA

GO:0004818 "glutamate-tRNA ligase activity" evidence=IEA

ASPGD|ASPL0000017154 AN8224 [Emericella nidulans (taxid:162425)]

 Score = 70 (29.7 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:    42 GNAIVEQISRNQDGNFTGV---VHLEG-YKTTVLKLTWL-----LEIIELVGFDYLITK 91
             GNA V +I  +  G  T +   ++ +G +K T  K+TWL     L  ++LV FDYL+ K
Sbjct:   552 GNAFVRKIVTDASGVVTELELDLNEKGDFKKTEKKVTWLSTDQDLVPVDLVDFDYLLNK 610

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004818 "glutamate-tRNA ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

SGD|S000003214 GUS1 "Glutamyl-tRNA synthetase (GluRS)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 100 (40.3 bits), Expect = 0.00032, P = 0.00032
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query:    42 GNAIVEQISRNQDGNFTGVVHLEG-YKTTVLKLTWLLEI-----IELVGFDYLITKKKV 94
             GN I+ +  +N DG+    ++LEG +K T  KLTWL +      ++LV FD+LITK ++
Sbjct:   579 GNVIITK--KNDDGSMVAKLNLEGDFKKTKHKLTWLADTKDVVPVDLVDFDHLITKDRL 635


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        95   0.00091  102 3  11 22  0.48    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  107 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.53u 0.16s 10.69t   Elapsed:  00:00:01
  Total cpu time:  10.53u 0.16s 10.69t   Elapsed:  00:00:01
  Start:  Fri May 10 18:17:42 2013   End:  Fri May 10 18:17:43 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004818 "glutamate-tRNA ligase activity" evidence=IEA;IDA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=IEA;IDA

GO:0017102 "methionyl glutamyl tRNA synthetase complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0003723 "RNA binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022490001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (177 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
PLN02907	722	PLN02907, PLN02907, glutamate-tRNA ligase	7e-17
PLN02907	722	PLN02907, PLN02907, glutamate-tRNA ligase	4e-09
PLN03233	523	PLN03233, PLN03233, putative glutamate-tRNA ligase	1e-06
PTZ00402	601	PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Prov	1e-05
cd00807	238	cd00807, GlnRS_core, catalytic core domain of glut	0.002
pfam00749	314	pfam00749, tRNA-synt_1c, tRNA synthetases class I	0.003

>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase

 Score = 73.6 bits (181), Expect = 7e-17
 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 9/62 (14%)

Query: 42  GNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIIELVG-----FDYLITKK 92
           GNAI+++I++++ G  T   G +HLEG  KTT LKLTWL +  ELV      FDYLITKK
Sbjct: 590 GNAIIKEITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKK 649

Query: 93  KV 94
           K+
Sbjct: 650 KL 651

Length = 722

>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 8/49 (16%)

Query: 1   PRSHHQIRSNYKIYLTY--------GLTFVSFSLRSSEYNARNAQYHMI 41
           P  HH+I S YK+Y TY         L  V+ +LRSSEY+ RNAQY+ I
Sbjct: 377 PTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRI 425

Length = 722

>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 17/94 (18%)

Query: 4   HHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDG 55
           HH+  + YK Y TY L          V+ +LR++EY+ R+AQ+  I  A+   + R +  
Sbjct: 178 HHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKAL--GLRRPRIH 235

Query: 56  NFTGVVHLEGYKTTVL---KLTWLLEIIELVGFD 86
            F  +     +  TVL   KLTW ++   + G+D
Sbjct: 236 AFARM----NFMNTVLSKRKLTWFVDNGHVTGWD 265

Length = 523

>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 42  GNAIVEQISR-NQDGNFTG---VVHLEG-YKTTVLKLTWLLE-----IIELVGFDYLITK 91
           GNA ++ I R  +D   T    V+HLEG  K T  KLTW+ E     ++EL  +D+L+TK
Sbjct: 429 GNAYIKNIRRSGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLLTK 488

Query: 92  KK 93
           KK
Sbjct: 489 KK 490

Length = 601

>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 4   HHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAI 45
           HH+    + IY TY            ++ SL + E+  R   Y+ + +A+
Sbjct: 96  HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDAL 145

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 238

>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), catalytic domain

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 4   HHQIRSNYKIYLTYGLTFV--------SFSLRSSEYNARNAQYHMIGNAIVEQISRNQDG 55
           H +    +  Y TY    V        +  LR  E+     +   I  A+          
Sbjct: 174 HDRTGLKWDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQAL--GWEVPPFI 231

Query: 56  NFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYL 88
           +    ++L+G K +  KL+  + I ++ G+   
Sbjct: 232 HEYLRLNLDGTKLSKRKLSLSVFISQVKGWGDP 264

Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG1147	712	consensus Glutamyl-tRNA synthetase [Translation, r	99.97
KOG1148	764	consensus Glutaminyl-tRNA synthetase [Translation,	99.97
PTZ00437	574	glutaminyl-tRNA synthetase; Provisional	99.94
PRK05347	554	glutaminyl-tRNA synthetase; Provisional	99.93
PLN02859	788	glutamine-tRNA ligase	99.92
TIGR00440	522	glnS glutaminyl-tRNA synthetase. This protein is a	99.92
PLN03233	523	putative glutamate-tRNA ligase; Provisional	99.91
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	99.91
PLN02907	722	glutamate-tRNA ligase	99.9
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	99.88
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	99.83
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	99.71
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	99.66
cd09287	240	GluRS_non_core catalytic core domain of non-discri	99.65
KOG1147	712	consensus Glutamyl-tRNA synthetase [Translation, r	99.48
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	99.39
PF00749	314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	99.14
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	98.91
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	98.51
cd00808	239	GluRS_core catalytic core domain of discriminating	98.45
PRK12410	433	glutamylglutaminyl-tRNA synthetase; Provisional	98.37
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	98.32
PLN02627	535	glutamyl-tRNA synthetase	98.14
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	98.09
PRK12558	445	glutamyl-tRNA synthetase; Provisional	98.04
PLN02907	722	glutamate-tRNA ligase	97.79
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	97.66
KOG1149	524	consensus Glutamyl-tRNA synthetase (mitochondrial)	97.31
PF03950	174	tRNA-synt_1c_C: tRNA synthetases class I (E and Q)	97.26
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	97.09
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	96.84
TIGR00440	522	glnS glutaminyl-tRNA synthetase. This protein is a	95.95
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	95.76
PRK05347	554	glutaminyl-tRNA synthetase; Provisional	95.51
PLN03233	523	putative glutamate-tRNA ligase; Provisional	94.76
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	94.2
PTZ00437	574	glutaminyl-tRNA synthetase; Provisional	92.87
cd00802	143	class_I_aaRS_core catalytic core domain of class I	88.27
PLN02859	788	glutamine-tRNA ligase	85.17

>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.1e-31  Score=217.70  Aligned_cols=83  Identities=29%  Similarity=0.545  Sum_probs=77.6

Q ss_pred             CCCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHH
Q 042647            1 PRSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVL   71 (95)
Q Consensus         1 ~~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKr   71 (95)
                      +.||||||+||+|||||||||        |||+|||.||.||+.||+|    +++.+....+..++ ||||+.++.+|||
T Consensus       364 ~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw----~i~al~LRkp~iwefsRlN~~nTvLSKR  439 (712)
T KOG1147|consen  364 PEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYW----FIDALGLRKPHIWEFSRLNFVNTVLSKR  439 (712)
T ss_pred             CCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHH----HHHHhcCCccceeehhhhhhHhhhhhhh
Confidence            468999999999999999998        9999999999999999999    77777776566678 9999999999999


Q ss_pred             HHHHhhhCCeeccccc
Q 042647           72 KLTWLLEIIELVGFDY   87 (95)
Q Consensus        72 Kl~wLve~~~v~~wDd   87 (95)
                      ||+|+|+.|.|.||||
T Consensus       440 KLtwfVd~GlV~GWDD  455 (712)
T KOG1147|consen  440 KLTWFVDEGLVDGWDD  455 (712)
T ss_pred             heeeeeccCcccCCCC
Confidence            9999999999999998

>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=2.7e-31  Score=216.90  Aligned_cols=86  Identities=23%  Similarity=0.296  Sum_probs=80.2

Q ss_pred             CCCCCCCCceEEeecCCcc-c-------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647            2 RSHHQIRSNYKIYLTYGLT-F-------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK   72 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~-~-------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK   72 (95)
                      .+|||||++|||||||||| |       |||||||+||+.|+.+|+|.+|+    ++.+.|.|++ ||||+.|+++||||
T Consensus       414 ~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcna----L~iY~P~qwEYgRLNv~~tv~SKRK  489 (764)
T KOG1148|consen  414 VPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNA----LEIYCPVQWEYGRLNVTYTVVSKRK  489 (764)
T ss_pred             CCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhh----hhcccchhhhhceeeeeeeeeehHH
Confidence            4899999999999999999 5       99999999999999999996666    6888899999 99999999999999


Q ss_pred             HHHhhhCCeeccccc--cccc
Q 042647           73 LTWLLEIIELVGFDY--LITK   91 (95)
Q Consensus        73 l~wLve~~~v~~wDd--li~k   91 (95)
                      |..|+..|.|.||||  |.|.
T Consensus       490 i~~Lv~~~~V~~wDDPRLfTL  510 (764)
T KOG1148|consen  490 ILKLVTEGYVRGWDDPRLFTL  510 (764)
T ss_pred             HHHHhhhcccccCCCccchhh
Confidence            999999999999999  6654

>PTZ00437 glutaminyl-tRNA synthetase; Provisional

Probab=99.94  E-value=2.9e-28  Score=198.91  Aligned_cols=82  Identities=21%  Similarity=0.379  Sum_probs=76.8

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK   72 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK   72 (95)
                      .+|||+|++|+|||||||||        |||||||+||++|++.|.|    +++.+....|.+++ +|||++|+++||||
T Consensus       216 ~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~w----l~~~l~l~~p~~~ef~rln~~~~~LSKRk  291 (574)
T PTZ00437        216 VEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFW----LLEELNLWRPHVWEFSRLNVTGSLLSKRK  291 (574)
T ss_pred             CCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcccHHHHH----HHHHhCCcccceEeeeeecCCCceeeccc
Confidence            47999999999999999995        9999999999999999998    66777777778889 99999999999999


Q ss_pred             HHHhhhCCeeccccc
Q 042647           73 LTWLLEIIELVGFDY   87 (95)
Q Consensus        73 l~wLve~~~v~~wDd   87 (95)
                      +.+||++|+|.||||
T Consensus       292 l~~lV~~g~V~GWDD  306 (574)
T PTZ00437        292 INVLVRKGIVRGFDD  306 (574)
T ss_pred             hHHhcccCccCCCCC
Confidence            999999999999999

>PRK05347 glutaminyl-tRNA synthetase; Provisional

Probab=99.93  E-value=3.9e-27  Score=191.91  Aligned_cols=82  Identities=20%  Similarity=0.356  Sum_probs=75.2

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhc-cCCCccEE-EEEecCceeehHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQIS-RNQDGNFT-GVVHLEGYKTTVL   71 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~-~~~~~~i~-~rLnl~g~k~SKr   71 (95)
                      .+|||+|++|+|||||||||        |||||||.||++++++|.|    +.+.+. ...|.+++ ||||++|+++|||
T Consensus       199 ~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~----i~~alg~~~~P~~~~F~rln~~~~~LSKR  274 (554)
T PRK05347        199 AHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDW----VLDNLPIPPHPRQYEFSRLNLTYTVMSKR  274 (554)
T ss_pred             CCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHH----HHHHcCCCCCCceEEEEEECCCCCccccc
Confidence            47999999999999999995        9999999999999999998    666664 23478889 9999999999999


Q ss_pred             HHHHhhhCCeeccccc
Q 042647           72 KLTWLLEIIELVGFDY   87 (95)
Q Consensus        72 Kl~wLve~~~v~~wDd   87 (95)
                      |+++||++|.+.||||
T Consensus       275 kl~~lV~~g~v~GWDD  290 (554)
T PRK05347        275 KLKQLVEEKHVDGWDD  290 (554)
T ss_pred             cchhccccCcccCccC
Confidence            9999999999999999

>PLN02859 glutamine-tRNA ligase

Probab=99.92  E-value=2.2e-26  Score=192.93  Aligned_cols=82  Identities=20%  Similarity=0.308  Sum_probs=76.4

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK   72 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK   72 (95)
                      .+|||||++|+|||||||||        |||||||.||.++++.|+|    +++.+....|.+++ +|||++|++|||||
T Consensus       429 ~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~w----l~~aLg~~~P~~~~f~rLn~~~t~LSKRk  504 (788)
T PLN02859        429 TPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYW----LLDSLGLYQPYVWEYSRLNVTNTVMSKRK  504 (788)
T ss_pred             cCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHH----HHHHcCCCCCcEEeeeeECCCCCcccCcC
Confidence            47999999999999999995        9999999999999999998    66666666678889 99999999999999


Q ss_pred             HHHhhhCCeeccccc
Q 042647           73 LTWLLEIIELVGFDY   87 (95)
Q Consensus        73 l~wLve~~~v~~wDd   87 (95)
                      +.+||++|.|.||||
T Consensus       505 l~~lV~~g~V~GWDD  519 (788)
T PLN02859        505 LNRLVTEKYVDGWDD  519 (788)
T ss_pred             chhccccCcccCCCC
Confidence            999999999999999

>TIGR00440 glnS glutaminyl-tRNA synthetase

Probab=99.92  E-value=8.7e-26  Score=183.16  Aligned_cols=82  Identities=24%  Similarity=0.399  Sum_probs=74.9

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccC-CCccEE-EEEecCceeehHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRN-QDGNFT-GVVHLEGYKTTVL   71 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~-~~~~i~-~rLnl~g~k~SKr   71 (95)
                      .+|||+|++|+|||||||||        |||||||.||.+++.+|.|    +.+++... .|.|++ ||||++|+++|||
T Consensus       170 ~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~----~~~~l~~~~~P~~~~F~rln~~~~kLSKR  245 (522)
T TIGR00440       170 APHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDW----VLDNIHIFPRPAQYEFSRLNLEGTVLSKR  245 (522)
T ss_pred             CCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHH----HHHhcCccCCCceEEEEEECCCCCCcccc
Confidence            47999999999999999995        9999999999999999988    55555554 478889 9999999999999


Q ss_pred             HHHHhhhCCeeccccc
Q 042647           72 KLTWLLEIIELVGFDY   87 (95)
Q Consensus        72 Kl~wLve~~~v~~wDd   87 (95)
                      |+++||++|+|.||||
T Consensus       246 k~~~~V~~g~v~GWdD  261 (522)
T TIGR00440       246 KLAQLVDDKFVRGWDD  261 (522)
T ss_pred             cchhccccCcccCCCC
Confidence            9999999999999999

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=99.91  E-value=3.4e-25  Score=179.75  Aligned_cols=82  Identities=28%  Similarity=0.501  Sum_probs=75.1

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK   72 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK   72 (95)
                      ++|||||++|++||||||||        |||||||.||.++++.+.|    +.+.+....|.+++ ++||++|+++||||
T Consensus       176 ~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~----l~~aLg~~~P~~~~f~rln~~~~kLSKR~  251 (523)
T PLN03233        176 TPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFW----IQKALGLRRPRIHAFARMNFMNTVLSKRK  251 (523)
T ss_pred             CcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHH----HHHHhCCCCCeeeeeEEECCCCCcccccC
Confidence            47999999999999999995        9999999999999999988    56666655567777 99999999999999


Q ss_pred             HHHhhhCCeeccccc
Q 042647           73 LTWLLEIIELVGFDY   87 (95)
Q Consensus        73 l~wLve~~~v~~wDd   87 (95)
                      +++||+.|.+.||||
T Consensus       252 l~~lV~~g~v~GWDD  266 (523)
T PLN03233        252 LTWFVDNGHVTGWDD  266 (523)
T ss_pred             chhhhccCcccCccC
Confidence            999999999999999

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=99.91  E-value=3.1e-25  Score=186.19  Aligned_cols=82  Identities=20%  Similarity=0.285  Sum_probs=74.0

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccC--CCccEE-EEEecCceeehH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRN--QDGNFT-GVVHLEGYKTTV   70 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~--~~~~i~-~rLnl~g~k~SK   70 (95)
                      .+|||+|++|+|||||||||        |||||||.||.++++.|.|    +.+.+...  .|.+++ ||||++|+++||
T Consensus       201 ~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~----l~~~l~~~~~~P~~~~f~rl~l~~~~lSK  276 (771)
T PRK14703        201 AHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDW----VLDHLGPWPPRPRQYEFARLALGYTVMSK  276 (771)
T ss_pred             CCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHH----HHHHhCCCCCCcceeEEEEeccCCCcccc
Confidence            47999999999999999995        9999999999999999998    55555322  367788 999999999999


Q ss_pred             HHHHHhhhCCeeccccc
Q 042647           71 LKLTWLLEIIELVGFDY   87 (95)
Q Consensus        71 rKl~wLve~~~v~~wDd   87 (95)
                      |||++||++|.+.||||
T Consensus       277 Rkl~~lV~~g~v~GWDD  293 (771)
T PRK14703        277 RKLRELVEEGYVSGWDD  293 (771)
T ss_pred             cCchhccccCcccCCCC
Confidence            99999999999999999

>PLN02907 glutamate-tRNA ligase

Probab=99.90  E-value=8.5e-25  Score=182.64  Aligned_cols=82  Identities=34%  Similarity=0.542  Sum_probs=75.0

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK   72 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK   72 (95)
                      ++|||||++|++||||||||        |||||||.||.+++++|.|    +.+.+....|.+++ ||||++|+++||||
T Consensus       378 ~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~----l~~~lg~~~p~~~~f~~l~~~~~~lSKR~  453 (722)
T PLN02907        378 TPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYR----ILEDMGLRKVHIWEFSRLNFVYTLLSKRK  453 (722)
T ss_pred             CcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHH----HHHHcCCCCCeeEEEEEEcCCCccccccc
Confidence            47999999999999999996        9999999999999999998    56666655566788 99999999999999


Q ss_pred             HHHhhhCCeeccccc
Q 042647           73 LTWLLEIIELVGFDY   87 (95)
Q Consensus        73 l~wLve~~~v~~wDd   87 (95)
                      |++|++.|.+.||||
T Consensus       454 l~~~v~~g~v~Gwdd  468 (722)
T PLN02907        454 LQWFVDNGKVEGWDD  468 (722)
T ss_pred             hHhHhhcCcccCCCC
Confidence            999999999999998

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=99.88  E-value=1.3e-23  Score=172.59  Aligned_cols=82  Identities=27%  Similarity=0.374  Sum_probs=75.3

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK   72 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK   72 (95)
                      .+|||+|++|++||||||||        |||||||.||.++++.+.|    +.+.+....|.+++ ++||++|+++||||
T Consensus       218 ~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~----L~~aLg~~~P~~~h~~rLn~~g~kLSKRk  293 (601)
T PTZ00402        218 TPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYW----FCDALGIRKPIVEDFSRLNMEYSVMSKRK  293 (601)
T ss_pred             CcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHH----HHHHhCCCCceEEEEeeEcCCCCcccccC
Confidence            47999999999999999995        9999999999999999998    55556655677888 99999999999999


Q ss_pred             HHHhhhCCeeccccc
Q 042647           73 LTWLLEIIELVGFDY   87 (95)
Q Consensus        73 l~wLve~~~v~~wDd   87 (95)
                      +++++++|+|.||||
T Consensus       294 l~~lv~~g~v~GWdD  308 (601)
T PTZ00402        294 LTQLVDTHVVDGWDD  308 (601)
T ss_pred             ChhhhhcCcccccCC
Confidence            999999999999998

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=99.83  E-value=3.5e-21  Score=157.66  Aligned_cols=82  Identities=20%  Similarity=0.351  Sum_probs=74.0

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK   72 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK   72 (95)
                      .+|||+|++|++||||||||        |||++|+.||.++++.+.+    +.+.+....|.+++ ++|+++|++||||+
T Consensus       268 ~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~----l~~~Lg~~~P~~~H~~~L~~~g~kLSKR~  343 (567)
T PRK04156        268 TPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY----IYDYFGWEYPETIHYGRLKIEGFVLSTSK  343 (567)
T ss_pred             CCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHH----HHHHcCCCCceEEEcceecCCCceeeccc
Confidence            37999999999999999995        9999999999999998887    55555555567788 99999999999999


Q ss_pred             HHHhhhCCeeccccc
Q 042647           73 LTWLLEIIELVGFDY   87 (95)
Q Consensus        73 l~wLve~~~v~~wDd   87 (95)
                      +++++++|.+.||||
T Consensus       344 ~~~~i~~g~~~gWDD  358 (567)
T PRK04156        344 IRKGIEEGEYSGWDD  358 (567)
T ss_pred             chhccccCccccccC
Confidence            999999999999999

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=99.71  E-value=7.3e-18  Score=138.06  Aligned_cols=79  Identities=22%  Similarity=0.302  Sum_probs=61.0

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhccccccc--chHHHHHHHHHHHhhhccCCCccEE-EEEecCc--eee
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNA--RNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEG--YKT   68 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~--~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g--~k~   68 (95)
                      ++|||+|++|++||||||||        |||||||.||.+  ++.+|.|    .....  ..|.+.+ +++.+++  ..+
T Consensus       258 ~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~----~~lg~--~~P~~~h~~~l~~~~~~kLs  331 (560)
T TIGR00463       258 TPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIY----MYFGW--ELPEFIHWGRLKINDVRTLS  331 (560)
T ss_pred             CCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHH----HHcCC--CCCeEEEEcceecCCCcEec
Confidence            47999999999999999996        999999999999  4555665    22222  2346666 7777777  455


Q ss_pred             hHHHHHHhhhCCeeccccc
Q 042647           69 TVLKLTWLLEIIELVGFDY   87 (95)
Q Consensus        69 SKrKl~wLve~~~v~~wDd   87 (95)
                      ||+|+.+|++ |.+.||||
T Consensus       332 kk~k~~~l~~-g~~~gWdD  349 (560)
T TIGR00463       332 TSSKLKGIVR-GDYSGWDD  349 (560)
T ss_pred             chhhhhhhhc-cCccCcCC
Confidence            5677888886 78999998

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=99.66  E-value=5.4e-17  Score=121.29  Aligned_cols=80  Identities=21%  Similarity=0.333  Sum_probs=72.6

Q ss_pred             CCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHHHH
Q 042647            4 HHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLKLT   74 (95)
Q Consensus         4 H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrKl~   74 (95)
                      |+++|++|++||+|+||+        |||++|+.|+.++.+.+.+    +.+.+....|.+++ +++|.+|.|+|||+..
T Consensus        96 ~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~----l~~aLg~~~P~~~~~~hln~~g~kLSKR~~~  171 (238)
T cd00807          96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYW----LCDALRLYRPHQWEFSRLNLTYTVMSKRKLL  171 (238)
T ss_pred             CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHH----HHHHcCCCCCceeEEEEECCCCCCccCcCch
Confidence            789999999999999995        9999999999999998887    55666666667778 9999999999999999


Q ss_pred             HhhhCCeeccccc
Q 042647           75 WLLEIIELVGFDY   87 (95)
Q Consensus        75 wLve~~~v~~wDd   87 (95)
                      .++++|.+.|||+
T Consensus       172 ~~i~~g~~~~wdd  184 (238)
T cd00807         172 QLVDEGYVDGWDD  184 (238)
T ss_pred             hccccCCcccccC
Confidence            9999999999997

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=99.65  E-value=1.1e-16  Score=119.69  Aligned_cols=80  Identities=23%  Similarity=0.305  Sum_probs=72.0

Q ss_pred             CCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHHHH
Q 042647            4 HHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLKLT   74 (95)
Q Consensus         4 H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrKl~   74 (95)
                      ||++|++|.+||+|+||+        |||++|+.||.++.+.+.+    +.+.+....|...+ .+++.+|.|+|||++.
T Consensus        98 ~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~----l~~~Lg~~~P~~~H~pll~~~~~kLSKR~~~  173 (240)
T cd09287          98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY----IYEYFGWEYPETIHWGRLKIEGGKLSTSKIR  173 (240)
T ss_pred             CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHH----HHHHcCCCCCcEEeeeeecCCCCeecccccc
Confidence            789999999999999995        9999999999999998887    55556655567777 9999999999999999


Q ss_pred             HhhhCCeeccccc
Q 042647           75 WLLEIIELVGFDY   87 (95)
Q Consensus        75 wLve~~~v~~wDd   87 (95)
                      +++++|.+.||||
T Consensus       174 ~~i~~~~~~~w~d  186 (240)
T cd09287         174 KGIESGEYEGWDD  186 (240)
T ss_pred             ccccccccccccC
Confidence            9999999999998

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.4e-15  Score=124.51  Aligned_cols=73  Identities=36%  Similarity=0.575  Sum_probs=63.1

Q ss_pred             hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE---EEEecCc-eeehHHHHHHhhhCC-----eecccccccccc
Q 042647           22 VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEII-----ELVGFDYLITKK   92 (95)
Q Consensus        22 vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g-~k~SKrKl~wLve~~-----~v~~wDdli~k~   92 (95)
                      +..+....--+++++|||+|||++|++|+++++|.++   +.|||+| ||+||.|++||++.+     .+.+||+||||+
T Consensus       557 le~~Da~~l~~gEevTlmnWGN~~i~ki~kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt~~~vpv~lv~fd~lItK~  636 (712)
T KOG1147|consen  557 LEQADAEALKEGEEVTLMNWGNAIIKKINKDASGKVTSLSAKLNLDGDFKKTKLKLTWLADTNDSVPVDLVDFDHLITKD  636 (712)
T ss_pred             EeccchhhhcCCcEEEEEeccceeeEEeeccCCceEEEEEEEeccCCccccccceeEEeccCCCccceEEeechhhcchh
Confidence            3444444445667889999999999999999888877   9999999 999999999999996     889999999999


Q ss_pred             cc
Q 042647           93 KV   94 (95)
Q Consensus        93 ~~   94 (95)
                      +|
T Consensus       637 ~l  638 (712)
T KOG1147|consen  637 KL  638 (712)
T ss_pred             hc
Confidence            87

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.1e-13  Score=111.72  Aligned_cols=78  Identities=17%  Similarity=0.145  Sum_probs=66.4

Q ss_pred             CCC-CCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCc-eeehHHH
Q 042647            4 HHQ-IRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEG-YKTTVLK   72 (95)
Q Consensus         4 H~r-tg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g-~k~SKrK   72 (95)
                      |++ ++.+|.+||||+||+        |||+||+.||.++++.+.+    +.+.+.-..|.+.+ ++++.+. .|+||||
T Consensus       180 ~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~----l~~~lg~~~P~~~H~~li~~~~g~kLSKr~  255 (472)
T COG0008         180 HPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIW----LYEALGWPPPVYAHLPLLLNEDGKKLSKRK  255 (472)
T ss_pred             CCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHH----HHHHcCCCCCcEEEeeeeecCCCCeecCcc
Confidence            889 999999999999995        9999999999999998887    66667776677888 8888744 5999999


Q ss_pred             HHHhhhCC--eeccccc
Q 042647           73 LTWLLEII--ELVGFDY   87 (95)
Q Consensus        73 l~wLve~~--~v~~wDd   87 (95)
                      .  .+..+  ...||++
T Consensus       256 ~--~~~~~~~~~~G~~~  270 (472)
T COG0008         256 G--AVSIGEYRVEGWLP  270 (472)
T ss_pred             C--ccccchhhhcCCCc
Confidence            9  55555  7788887

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6

Probab=99.14  E-value=3.1e-12  Score=98.36  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=66.0

Q ss_pred             CCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH
Q 042647            3 SHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK   72 (95)
Q Consensus         3 ~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK   72 (95)
                      .|+.++.++..+|||+||+        |||++|+.|+..+.....+    +.+.+....|...+  ..+|.+|.|+|||+
T Consensus       173 ~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~----L~~~Lg~~~P~~~H~pl~l~~~g~kLSKR~  248 (314)
T PF00749_consen  173 LGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQIL----LYEALGWPPPPYAHLPLILNEDGKKLSKRK  248 (314)
T ss_dssp             SBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHH----HHHHCTSSS-EEEEEEEEEETTSSBSSTTC
T ss_pred             CCchhccccccCcccccceeecccccccCeEEEccccccccHHHHH----HHHHhCCCCcceEeeeeeecCCCcEechhh
Confidence            3788899999999999995        9999999999999998887    66666665444455  99999999999999


Q ss_pred             HHHhhhCCeecccccc
Q 042647           73 LTWLLEIIELVGFDYL   88 (95)
Q Consensus        73 l~wLve~~~v~~wDdl   88 (95)
                      ...+++.+.+.+||++
T Consensus       249 ~~~~i~~~~~r~~g~~  264 (314)
T PF00749_consen  249 GAKSIELGDYREWGDP  264 (314)
T ss_dssp             SHHBHHHHHHHHTT-T
T ss_pred             ccccccccccccCCCC
Confidence            9999777777777764

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=98.91  E-value=4.8e-10  Score=85.27  Aligned_cols=73  Identities=11%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             CCCCCCceEE-----eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-E-EEecCceee
Q 042647            4 HHQIRSNYKI-----YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-G-VVHLEGYKT   68 (95)
Q Consensus         4 H~rtg~~~~i-----yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~-rLnl~g~k~   68 (95)
                      |+...+.+.|     ||||+||+        |||++|+.|+..+.+....    +.+.+.-..|...+ . .+|.+|.|+
T Consensus       155 ~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~----l~~aLg~~~P~y~H~pll~~~~g~kL  230 (272)
T TIGR03838       155 LAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIY----LQRLLGLPPPRYLHLPLVVNADGEKL  230 (272)
T ss_pred             CcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHH----HHHHhCCCCCeEEechhhhCCCCCee
Confidence            5667778999     99999995        9999999999999998777    55555544454455 3 469999999


Q ss_pred             hHHHHHHhhhCC
Q 042647           69 TVLKLTWLLEII   80 (95)
Q Consensus        69 SKrKl~wLve~~   80 (95)
                      |||+....++..
T Consensus       231 SKR~~~~~i~~~  242 (272)
T TIGR03838       231 SKQNGAPALDLS  242 (272)
T ss_pred             eccCCccchhcC
Confidence            999999998774

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=98.51  E-value=5.6e-08  Score=72.51  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=50.5

Q ss_pred             EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCc-eeehHHH----HHHhhh
Q 042647           13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEG-YKTTVLK----LTWLLE   78 (95)
Q Consensus        13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g-~k~SKrK----l~wLve   78 (95)
                      .||||+||+        |||++|+.|+.++.+...+    +.+.+....|...+ ..+..++ .|+|||+    +..+.+
T Consensus        93 g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~----l~~~Lg~~~P~~~H~pll~~~~g~KLSKr~~~~~i~~~r~  168 (230)
T cd00418          93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDW----LYEALGWEPPRFYHFPRLLLEDGTKLSKRKLNTTLRALRR  168 (230)
T ss_pred             CCccccccccccccccCCCEEEECHhhhhchHHHHH----HHHHcCCCCCeEEEeeeeeCCCCCCccCcCCCcCHHHHHH
Confidence            689999995        9999999999999998777    66666665566677 7776555 9999997    445555


Q ss_pred             CC
Q 042647           79 II   80 (95)
Q Consensus        79 ~~   80 (95)
                      .|
T Consensus       169 ~G  170 (230)
T cd00418         169 RG  170 (230)
T ss_pred             CC
Confidence            45

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=98.45  E-value=7.4e-08  Score=72.13  Aligned_cols=64  Identities=16%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEE-ecCceeehHHHH----HHhhh
Q 042647           13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVV-HLEGYKTTVLKL----TWLLE   78 (95)
Q Consensus        13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rL-nl~g~k~SKrKl----~wLve   78 (95)
                      .+|||+||+        |||++|+.|+..+.+...+    +.+.+....|...+ +.+ |.+|.|||||+.    .+|.+
T Consensus       102 g~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~----l~~aLg~~~p~~~h~pll~~~~g~KLSKR~~~~~l~~lr~  177 (239)
T cd00808         102 GFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQIL----LYEALGWEPPKFAHLPLILNPDGKKLSKRKGDTSISDYRE  177 (239)
T ss_pred             CCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHH----HHHHcCCCCCceEeeccccCCCCCcccCCCCCccHHHHHH
Confidence            589999994        9999999999999998777    56666655454455 664 899999999976    67777


Q ss_pred             CC
Q 042647           79 II   80 (95)
Q Consensus        79 ~~   80 (95)
                      .|
T Consensus       178 ~G  179 (239)
T cd00808         178 EG  179 (239)
T ss_pred             CC
Confidence            66

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional

Probab=98.37  E-value=2.5e-07  Score=74.44  Aligned_cols=70  Identities=21%  Similarity=0.320  Sum_probs=53.5

Q ss_pred             CCCceEEe-----ecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCC-ccEE--EEEecCceeehH
Q 042647            7 IRSNYKIY-----LTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQD-GNFT--GVVHLEGYKTTV   70 (95)
Q Consensus         7 tg~~~~iy-----P~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~-~~i~--~rLnl~g~k~SK   70 (95)
                      ..+.+.|.     |||+||+        |||++|+.|+..+.+....    +.+.+.-..| ...+  ..+|.+|.|+||
T Consensus       163 ~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~----Ly~aLg~~~pp~f~Hlpli~~~~g~KLSK  238 (433)
T PRK12410        163 EIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQIL----IREALGYNKEITYAHLPIILNEEGKKMSK  238 (433)
T ss_pred             cCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHH----HHHHcCCCCCCeEEEeeeeeCCCCCeeec
Confidence            33457764     9999995        9999999999999987766    4444444322 3344  688999999999


Q ss_pred             HH----HHHhhhCC
Q 042647           71 LK----LTWLLEII   80 (95)
Q Consensus        71 rK----l~wLve~~   80 (95)
                      |+    +.++.+.|
T Consensus       239 R~~~~~v~~~r~~G  252 (433)
T PRK12410        239 RDNASSVKWLLEQG  252 (433)
T ss_pred             ccChhhHHHHHHCC
Confidence            98    77777777

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=98.32  E-value=1.6e-07  Score=72.41  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=50.0

Q ss_pred             EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHHHHHhhhC
Q 042647           13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLKLTWLLEI   79 (95)
Q Consensus        13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrKl~wLve~   79 (95)
                      -+|+|+||+        |||++|+.|+.++.+...+    +.+.+.-..|...+  ..+|.+|.|+|||+....++.
T Consensus       176 g~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~----l~~aLg~~~P~y~H~pll~~~~g~kLSKr~~~~~i~~  248 (299)
T PRK05710        176 GLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIY----LQQLLGLPTPRYLHLPLVLNADGQKLSKQNGAPALDA  248 (299)
T ss_pred             CCccccchhHHhcccCCCCEEEeChhhhhcCHHHHH----HHHHcCCCCCeEEEeecccCCCCCcccccCCccchhh
Confidence            369999995        9999999999999998776    44445544455556  456999999999998887765

>PLN02627 glutamyl-tRNA synthetase

Probab=98.14  E-value=1.2e-06  Score=72.24  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EE-EecCceeehHHH----HHHhhhC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GV-VHLEGYKTTVLK----LTWLLEI   79 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~r-Lnl~g~k~SKrK----l~wLve~   79 (95)
                      ||||+|||        |||++|+.|+..+.+..+.    +.+.+.-..|...+ .. +|.+|.|+|||+    +..+.+.
T Consensus       234 ~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~----ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~  309 (535)
T PLN02627        234 QPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQAL----IYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREM  309 (535)
T ss_pred             CccccccceecccccCCcEEEechhhhcChHHHHH----HHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHC
Confidence            89999995        9999999999999998777    55555554455556 44 567779999995    6777777


Q ss_pred             C
Q 042647           80 I   80 (95)
Q Consensus        80 ~   80 (95)
                      |
T Consensus       310 G  310 (535)
T PLN02627        310 G  310 (535)
T ss_pred             C
Confidence            7

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=98.09  E-value=2.1e-06  Score=69.49  Aligned_cols=65  Identities=12%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI   79 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~   79 (95)
                      +|||+||+        |||++|+.|+..+.+....    +.+.+.-..|...+  --+|++|.|||||+    +..|.+.
T Consensus       182 ~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~----l~~aLg~~~p~~~H~p~l~~~~g~kLSKR~g~~~l~~l~~~  257 (470)
T TIGR00464       182 SPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQIL----IYQALGWKIPVFAHLPMILDEDGKKLSKRDGATSIMQFKEQ  257 (470)
T ss_pred             CcccccHHHHHHHhCCCCEEEECchhhcCHHHHHH----HHHHcCCCCCeEEEEeeeecCCCccccccCCCccHHHHHHC
Confidence            79999995        9999999999999988776    55555543344445  44688999999999    8999999


Q ss_pred             Cee
Q 042647           80 IEL   82 (95)
Q Consensus        80 ~~v   82 (95)
                      |++
T Consensus       258 g~~  260 (470)
T TIGR00464       258 GYL  260 (470)
T ss_pred             CCC
Confidence            833

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>PRK12558 glutamyl-tRNA synthetase; Provisional

Probab=98.04  E-value=2.2e-06  Score=69.27  Aligned_cols=63  Identities=14%  Similarity=0.023  Sum_probs=47.4

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI   79 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~   79 (95)
                      +|||+||+        |||++|+.|+..+.+...+    +.+.+.-..|...+  --++.+|.|+|||+    +..+.+.
T Consensus       181 ~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~----l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~~sv~~~r~~  256 (445)
T PRK12558        181 SYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQ----IFEALGAKPPVFAHLSLLTGADGKGLSKRLGGLSIRSLRED  256 (445)
T ss_pred             CccccccceeccccCCCCEEEechhhhhCCHHHHH----HHHHhCCCCCeEEEcccccCCCcccccccCCCcCHHHHHHC
Confidence            59999995        9999999999999998776    44445544454455  44556679999996    6667676


Q ss_pred             C
Q 042647           80 I   80 (95)
Q Consensus        80 ~   80 (95)
                      |
T Consensus       257 G  257 (445)
T PRK12558        257 G  257 (445)
T ss_pred             C
Confidence            7

>PLN02907 glutamate-tRNA ligase

Probab=97.79  E-value=1.1e-06  Score=74.51  Aligned_cols=62  Identities=52%  Similarity=0.830  Sum_probs=52.5

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecCc-eeehHHHHHHhhhC--C---eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEI--I---ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g-~k~SKrKl~wLve~--~---~v~~wDdli~k~~~   94 (95)
                      .++++||+|||.+++++.++++|.++   +.++++| ++++|.||+|+.+.  .   .+..||+|++++++
T Consensus       581 g~~v~L~~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~~~~~~~~~~~~d~l~~~~~~  651 (722)
T PLN02907        581 GEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKKKL  651 (722)
T ss_pred             CCEEEEcccCCEEEEEEEECCCCcEEEEEEEEccccCCCcCCCeEEEecCCCCceEEEEEccccccccCCC
Confidence            56788999999999988877677764   8899998 89999999999764  2   88899999999875

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=97.66  E-value=2.6e-05  Score=63.31  Aligned_cols=63  Identities=10%  Similarity=0.102  Sum_probs=48.1

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI   79 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~   79 (95)
                      +|||+|++        |||++|+.|+..+.+....    +.+.+.-..|...+  --+|++|.|+|||+    +..+.+.
T Consensus       192 ~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~----l~~alG~~~p~~~H~pli~~~~g~klSKR~g~~~l~~l~~~  267 (476)
T PRK01406        192 TPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQIL----LYEALGWEVPVFAHLPLILGPDGKKLSKRHGATSVEQYRDM  267 (476)
T ss_pred             CccccchHHHHHHHcCCCEEEECchhhcCHHHHHH----HHHHhCCCCCeEEEeeeeeCCCCCcccCcCCccCHHHHHHC
Confidence            79999994        9999999999999988776    55555543344344  44689999999996    5666666


Q ss_pred             C
Q 042647           80 I   80 (95)
Q Consensus        80 ~   80 (95)
                      |
T Consensus       268 G  268 (476)
T PRK01406        268 G  268 (476)
T ss_pred             C
Confidence            6

>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.00017  Score=58.74  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=45.0

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI   79 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~   79 (95)
                      +|||.||+        |||++|+.|...+...-.-.-+|    ..=..|...+  --+|.+|.|+|||+    +.-+.+.
T Consensus       222 fPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkA----fgW~pPkFaHlpLl~n~d~sKLSKRqgD~~vs~~~e~  297 (524)
T KOG1149|consen  222 FPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKA----FGWQPPKFAHLPLLLNPDGSKLSKRQGDASVSHYREQ  297 (524)
T ss_pred             CcceeeeeeecchhcchhheeecchhccccHHHHHHHHH----hCCCCCceeeeeeeecCCcchhhhhcCcchHHHHHHc
Confidence            79999996        99999999999887653321122    2222344455  77899999999995    5666666


Q ss_pred             C
Q 042647           80 I   80 (95)
Q Consensus        80 ~   80 (95)
                      |
T Consensus       298 G  298 (524)
T KOG1149|consen  298 G  298 (524)
T ss_pred             C
Confidence            6

>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6

Probab=97.26  E-value=5.1e-06  Score=59.27  Aligned_cols=61  Identities=21%  Similarity=0.320  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecCce---eehHHHHHHhhhCC----eeccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEGY---KTTVLKLTWLLEII----ELVGFDYLITKKK   93 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g~---k~SKrKl~wLve~~----~v~~wDdli~k~~   93 (95)
                      ...++||.|||..++++.++++|.+.   ++++.+..   ++.|.+|+|+.+..    .+..||+|+++++
T Consensus        61 g~~v~L~~~~ni~i~~~~~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~~~~v~~e~r~yd~Lf~~~~  131 (174)
T PF03950_consen   61 GKEVRLMYWGNIKITSIEKDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSAKDSVPVEVRLYDHLFTVDN  131 (174)
T ss_dssp             TCEEEETTTEEEEEEEEEE-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEGCC-EEEEEEEE--SBSSS-
T ss_pred             CCEEEEeccceEEEEEeeecCCCCEEEEEEEEecccccCCcccCcEEEEccCCCCeeeEEEEehhhcCCCc
Confidence            45678999999999999877666654   78887664   45556999999754    7889999999753

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=97.09  E-value=0.00033  Score=57.74  Aligned_cols=62  Identities=13%  Similarity=0.120  Sum_probs=46.6

Q ss_pred             ecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEE-ecCceeehHHH----HHHhhhCC
Q 042647           15 LTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVV-HLEGYKTTVLK----LTWLLEII   80 (95)
Q Consensus        15 P~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rL-nl~g~k~SKrK----l~wLve~~   80 (95)
                      |||+|++        |||++|+.|+..+.+....    +.+.+.-..|...+ +.+ |++|.|||||+    |..+-+.|
T Consensus       182 ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~----l~~aLG~~~p~~~H~plv~~~~g~KLSKR~g~~~i~~~r~~G  257 (513)
T PRK14895        182 ATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLA----IYQAFGYAVPSMTHIPLIHGADGAKLSKRHGALGIEAYKDMG  257 (513)
T ss_pred             cchhhHHHHHHHhcCCCEEEECchHhhhHHHHHH----HHHHcCCCCCeEEEEEeEEcCCCCccccccCchhHHHHHHCC
Confidence            9999995        9999999999999887665    55555544454455 555 49999999996    45555556

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=96.84  E-value=5.3e-05  Score=63.32  Aligned_cols=63  Identities=43%  Similarity=0.570  Sum_probs=48.8

Q ss_pred             ccchHHHHHHHHHHHhhhccC-CCccEE---EEEecCc-eeehHHHHHHhhhCC-----eecccccccccccc
Q 042647           32 NARNAQYHMIGNAIVEQISRN-QDGNFT---GVVHLEG-YKTTVLKLTWLLEII-----ELVGFDYLITKKKV   94 (95)
Q Consensus        32 ~~~~~ty~~Wgn~~v~~i~~~-~~~~i~---~rLnl~g-~k~SKrKl~wLve~~-----~v~~wDdli~k~~~   94 (95)
                      ..++++||+|||+++.++... ++|.|.   ..++++| ++++|.+|+|+...+     .+..||+|++++++
T Consensus       419 ~g~~vrL~~~gn~~i~~~~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf~~~~p  491 (601)
T PTZ00402        419 EGDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLLTKKKP  491 (601)
T ss_pred             CCCEEEEeccCCEEEEEEEeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCCCCcceEEEEecccccCCCCC
Confidence            356788999999998877642 346555   6677777 888888999997652     68899999998764

>TIGR00440 glnS glutaminyl-tRNA synthetase

Probab=95.95  E-value=0.00026  Score=58.37  Aligned_cols=62  Identities=11%  Similarity=0.128  Sum_probs=47.4

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecC------c-eeehHHHHHHhhhCC----eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLE------G-YKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~------g-~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      .+++.|++++|..++.+.++++|.+.   +.++.+      + ++++|.+|+|+....    .+..||+|++++++
T Consensus       380 g~~vrL~~~~~i~~~~~~~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~evr~yd~Lf~~~~p  455 (522)
T TIGR00440       380 GKEVRLRNAYVIKAERVEKDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSASSKYPTETRLYDRLFKVPNP  455 (522)
T ss_pred             CCEEEeCCEEEEEEEEEEecCCCCEEEEEEEEccccccCCccccccCCcEEEeeecCCCeeEEEEecccccCCCCC
Confidence            45567888888777777777677766   777764      3 678778999997543    88899999999875

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=95.76  E-value=0.00029  Score=58.60  Aligned_cols=61  Identities=23%  Similarity=0.363  Sum_probs=47.6

Q ss_pred             ccchHHHHHHHHHHHhhhccCCCccEEEEEecCc-eeehHHHHHHhhhCC----eecccccccccccc
Q 042647           32 NARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEG-YKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        32 ~~~~~ty~~Wgn~~v~~i~~~~~~~i~~rLnl~g-~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      ..++++||+|||.++++++.+  +.....+++++ +++++.+|+|+.+..    .+..+|.||+++++
T Consensus       457 ~g~~vrL~~~~ni~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~Wv~~~~~v~~~~~~~d~l~~~~~~  522 (560)
T TIGR00463       457 EGEEVRLMDWGNVIITKKNDD--GSMYHSLNLEGARKKGKHIIHWLPDKDAVKVKVIMPDHLITEGRL  522 (560)
T ss_pred             CCCEEEEeecccEEEEEEeCC--CcEEeccccccccccCCCEEEECcCCCceEEEEEcCccccccCcc
Confidence            356788999999998877553  33337788888 788889999998643    88899999987654

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>PRK05347 glutaminyl-tRNA synthetase; Provisional

Probab=95.51  E-value=0.00053  Score=57.00  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecC-------ceeehHHHHHHhhhCC----eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLE-------GYKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~-------g~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      .+++.||++++..++++.++++|.|.   ++++++       .++++|.+|+|+....    .+..||+|++++++
T Consensus       410 g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~~~~v~~~v~~yd~Lf~~~~p  485 (554)
T PRK05347        410 GKEVRLRNAYVIKCEEVVKDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSAAHAVPAEVRLYDRLFTVPNP  485 (554)
T ss_pred             CCEEEecCEEEEEEEEEEEcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeecCCCEeEEEEEeccccCCCCC
Confidence            45667898888777777776667765   788876       3677778999997644    88899999998875

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=94.76  E-value=0.0012  Score=54.50  Aligned_cols=58  Identities=24%  Similarity=0.403  Sum_probs=43.4

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEEEEEecCc-eeehHHHHHHhhh--CC---eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEG-YKTTVLKLTWLLE--II---ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~~rLnl~g-~k~SKrKl~wLve--~~---~v~~wDdli~k~~~   94 (95)
                      .++++||.|+|..++++.++..    |++.+++ ++++|.+|+|+.+  .+   .+..||+|++++++
T Consensus       381 g~~vrL~~~~~i~~~~~~~d~~----~~~~~~~d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L~~~~~~  444 (523)
T PLN03233        381 GEDIVLLRWGVIEISKIDGDLE----GHFIPDGDFKAAKKKISWIADVSDNIPVVLSEFDNLIIKEKL  444 (523)
T ss_pred             CCEEEeCceeeEEEEEEEecCc----eEEeeCCCCcccccEEEEcCCCCCccceEEEecccccCCCCC
Confidence            4567799999987776655421    6666666 7888889999974  22   88899999998764

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=94.20  E-value=0.0022  Score=55.16  Aligned_cols=62  Identities=16%  Similarity=0.189  Sum_probs=47.9

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecCc------eeehHHHHHHhhhCC----eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEG------YKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g------~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      ...+.||+|+|..++.+.++++|.|+   +++++++      .++.|.+|+|+....    .+..||+|++++++
T Consensus       414 g~~vrL~~~~~i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~~~~v~~~vr~Yd~Lf~~~~p  488 (771)
T PRK14703        414 GREVRLRGAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRLYDRLFKVPQP  488 (771)
T ss_pred             CCEEEecceEEEEEEEEEEcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeecCCCeeEEEEecccccCCCCC
Confidence            45677999988778888777777766   7888877      245677899997543    88899999998764

>PTZ00437 glutaminyl-tRNA synthetase; Provisional

Probab=92.87  E-value=0.0073  Score=50.52  Aligned_cols=60  Identities=12%  Similarity=0.252  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHHhhhccCCCccEE---EEEecCceeehHHHHHHhhhCC----eecccccccccccc
Q 042647           35 NAQYHMIGNAIVEQISRNQDGNFT---GVVHLEGYKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        35 ~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      .+.+++|+|..++++..+++|.++   +...++..++.|.+|+|+.+..    .+..||+|++++++
T Consensus       428 ~vrL~~~~~i~~~~~~~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~~~~v~~evr~Yd~Lf~~~~p  494 (574)
T PTZ00437        428 VVGLKYSGNVVCKGFEVDAAGQPSVIHVDIDFERKDKPKTNISWVSATACTPVEVRLYNALLKDDRA  494 (574)
T ss_pred             EEEeccEEEEEEEEEEECCCCCEEEEEEEecccccccCCCeEEEeecCCceeEEEEeccccccCCCC
Confidence            566899998878877776667665   7777777777777899998654    88899999998653

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=88.27  E-value=0.15  Score=34.33  Aligned_cols=46  Identities=15%  Similarity=0.026  Sum_probs=33.7

Q ss_pred             hhhhcccccccchHHHHHHHHHHHhhhccC-CCccEE-EEEecCc-eeehHHH
Q 042647           23 SFSLRSSEYNARNAQYHMIGNAIVEQISRN-QDGNFT-GVVHLEG-YKTTVLK   72 (95)
Q Consensus        23 THsl~t~e~~~~~~ty~~Wgn~~v~~i~~~-~~~~i~-~rLnl~g-~k~SKrK   72 (95)
                      +|.++++|+..+.++...    +++.+... .+..+. +++..++ .|||||+
T Consensus        95 ~i~~~G~Dq~~h~~~~~~----i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~  143 (143)
T cd00802          95 DIHLGGSDQLGHIELGLE----LLKKAGGPARPFGLTFGRVMGADGTKMSKSK  143 (143)
T ss_pred             EEEEechhHHHHHHHHHH----HHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence            999999999887665554    66666433 244456 9998877 9999874

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PLN02859 glutamine-tRNA ligase

Probab=85.17  E-value=0.1  Score=45.33  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=40.7

Q ss_pred             HHHHHHH-Hhhhc-cCCCccEE---EEEecCceeehHHHHHHhhhC-----C---eecccccccccccc
Q 042647           39 HMIGNAI-VEQIS-RNQDGNFT---GVVHLEGYKTTVLKLTWLLEI-----I---ELVGFDYLITKKKV   94 (95)
Q Consensus        39 ~~Wgn~~-v~~i~-~~~~~~i~---~rLnl~g~k~SKrKl~wLve~-----~---~v~~wDdli~k~~~   94 (95)
                      +.|++++ ++++. ++.+|.|+   +.+++++..+.|.+|+|+.+.     .   .+..||+|++++++
T Consensus       648 L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p  716 (788)
T PLN02859        648 LRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENP  716 (788)
T ss_pred             EcceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcCCCCC
Confidence            4577666 45544 55567765   888888755667889999863     2   78899999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.78
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.77
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.75
4gri_A	512	Glutamate--tRNA ligase; structural genomics, seatt	98.71
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	98.57
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	98.41
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	98.36
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	98.33
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	98.32
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	98.29
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	98.27
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	98.13
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	92.68
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	90.16

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=99.78  E-value=4.6e-20  Score=149.59  Aligned_cols=82  Identities=23%  Similarity=0.378  Sum_probs=73.5

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccC-CCccEE-EEEecCceeehHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRN-QDGNFT-GVVHLEGYKTTVL   71 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~-~~~~i~-~rLnl~g~k~SKr   71 (95)
                      .+||++|++|++||||+|||        |||++|+.||.++++.+.|    +.+.+... .|.+++ |+||++|.|||||
T Consensus       196 ~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~----l~~alg~~~~P~~~~f~hLn~~g~KLSKR  271 (553)
T 1qtq_A          196 AEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDW----VLDNITIPVHPRQYEFSRLNLEYTVMSKR  271 (553)
T ss_dssp             CCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHH----HHHTSCCSCCCEEEEECCCCBTTSCCCHH
T ss_pred             CCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHH----HHHHcCCCCCCCeEEEEeecCCCcccccc
Confidence            46999999999999999995        9999999999999998887    55555544 367788 9999999999999


Q ss_pred             HHHHhhhCCeeccccc
Q 042647           72 KLTWLLEIIELVGFDY   87 (95)
Q Consensus        72 Kl~wLve~~~v~~wDd   87 (95)
                      ++.++++.|.|.||||
T Consensus       272 ~~~~~v~~g~v~gWDD  287 (553)
T 1qtq_A          272 KLNLLVTDKHVEGWDD  287 (553)
T ss_dssp             HHHHHHHTTSSSCTTC
T ss_pred             ccccccccCcccCCCC
Confidence            9999999999999999

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.77  E-value=4.2e-20  Score=149.83  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=60.5

Q ss_pred             CCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHHH
Q 042647            3 SHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLKL   73 (95)
Q Consensus         3 ~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrKl   73 (95)
                      +||++|++|++||+|+|||        |||++||.||.++++.+.|    +...+....|.+++ ++||++|.|||||++
T Consensus       260 ~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~----l~~alG~~~P~y~H~~~L~~~g~KLSKR~~  335 (553)
T 3aii_A          260 EHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEY----LYRHLGWEPPEFIHYGRLKMDDVALSTSGA  335 (553)
T ss_dssp             CBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHH----HHHHHTCCCCEEECCCCBC-------CHHH
T ss_pred             CCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHH----HHHHcCCCCCeEEEeeEEecCCceechhhh
Confidence            6999999999999999997        9999999999999998887    33444444567778 999999999999999


Q ss_pred             HHhhhCCeeccccc
Q 042647           74 TWLLEIIELVGFDY   87 (95)
Q Consensus        74 ~wLve~~~v~~wDd   87 (95)
                      .++++.|.|.||||
T Consensus       336 ~~~v~~g~v~gWdD  349 (553)
T 3aii_A          336 REGILRGEYSGWDD  349 (553)
T ss_dssp             HHHHHHSSCCSTTC
T ss_pred             hhhccccccccccC
Confidence            99999999999999

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=99.75  E-value=2.5e-19  Score=150.76  Aligned_cols=82  Identities=24%  Similarity=0.377  Sum_probs=73.5

Q ss_pred             CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCC-CccEE-EEEecCceeehHH
Q 042647            2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQ-DGNFT-GVVHLEGYKTTVL   71 (95)
Q Consensus         2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~-~~~i~-~rLnl~g~k~SKr   71 (95)
                      .+||++|++|++||||+|||        |||++|+.||.++++.+.|    +.+.+.... |.+++ ++||++|.|||||
T Consensus       236 ~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~----l~~alG~~~~P~~~~fahLn~~g~KLSKR  311 (851)
T 2hz7_A          236 KPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDW----LMEKLNFDPRPHQYEFGRRGLEYTITSKR  311 (851)
T ss_dssp             CCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHH----HHHHTTCSSCCEEEEECCEEETTCCCCHH
T ss_pred             CCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHH----HHHHcCCCCCCCceEEEEecCCCcccccc
Confidence            36999999999999999997        9999999999999998887    444554443 67788 9999999999999


Q ss_pred             HHHHhhhCCeeccccc
Q 042647           72 KLTWLLEIIELVGFDY   87 (95)
Q Consensus        72 Kl~wLve~~~v~~wDd   87 (95)
                      ++.++++.|.|.||||
T Consensus       312 ~g~~~v~~g~v~gwDD  327 (851)
T 2hz7_A          312 KLRELVQAGRVSGWDD  327 (851)
T ss_dssp             HHHHHHHTTSSSSTTC
T ss_pred             ccccccccCcccCCCC
Confidence            9999999999999999

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}

Probab=98.71  E-value=3.1e-09  Score=85.13  Aligned_cols=73  Identities=15%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             CCCCCCceEE----eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeeh
Q 042647            4 HHQIRSNYKI----YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTT   69 (95)
Q Consensus         4 H~rtg~~~~i----yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~S   69 (95)
                      |...|+.+.+    ||||+|||        |||++|+.|+.++.+.+.+    +.+.+.-..|...+  --++.+|.|+|
T Consensus       200 ~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~----l~~alg~~~P~y~H~pli~~~~g~kLS  275 (512)
T 4gri_A          200 KDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVL----LYKAFKWKPPIYCHLPMVMGNDGQKLS  275 (512)
T ss_dssp             GGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHH----HHHHHTCCCCEEEEECCCBCTTSSBCC
T ss_pred             cccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHH----HHHHcCCCCCeEEecchhccccccccC
Confidence            4456665554    99999996        9999999999999998887    55555555444445  56777889999


Q ss_pred             HHH----HHHhhhCC
Q 042647           70 VLK----LTWLLEII   80 (95)
Q Consensus        70 KrK----l~wLve~~   80 (95)
                      ||+    +..+.+.|
T Consensus       276 KR~~~~~v~~~~~~G  290 (512)
T 4gri_A          276 KRHGSTALRQFIEDG  290 (512)
T ss_dssp             TTTSCCBHHHHHHHT
T ss_pred             cccccccHHHHHHcC
Confidence            997    77888877

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=98.57  E-value=1.1e-08  Score=81.45  Aligned_cols=62  Identities=18%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEEEE----EecCceeehHHH----HHHhh
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGV----VHLEGYKTTVLK----LTWLL   77 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~~r----Lnl~g~k~SKrK----l~wLv   77 (95)
                      ||||+|||        |||++|+.|+.++.+.+.+    +.+.+....|..  ++    +|.+|.|||||+    |..+.
T Consensus       184 ~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~----l~~alg~~~p~~--~h~~li~~~~g~klSKR~g~~~l~~~~  257 (468)
T 1j09_A          184 YPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVL----LYRAFGWEAPRF--YHMPLLRNPDKTKISKRKSHTSLDWYK  257 (468)
T ss_dssp             CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHH----HHHHHTCCCCEE--EEECCCBCTTSCBCCTTTSCCBHHHHH
T ss_pred             CeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHH----HHHHcCCCCCeE--EEeeeeeCCCCCccccccchhhHHHHH
Confidence            99999996        9999999999999998887    555555432322  44    488899999999    99999


Q ss_pred             hCCe
Q 042647           78 EIIE   81 (95)
Q Consensus        78 e~~~   81 (95)
                      +.|+
T Consensus       258 ~~G~  261 (468)
T 1j09_A          258 AEGF  261 (468)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            9883

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=98.41  E-value=5.5e-08  Score=77.77  Aligned_cols=64  Identities=11%  Similarity=0.071  Sum_probs=50.3

Q ss_pred             EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhh
Q 042647           13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLE   78 (95)
Q Consensus        13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve   78 (95)
                      .+|||+|||        |||++|+.|+.++.+.+.+    +.+.+.-..|...+  --+|.+|.|||||+    |.++.+
T Consensus       195 G~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~----l~~aLG~~~P~f~H~pli~~~~g~KLSKR~g~~~l~~~r~  270 (488)
T 3afh_A          195 GFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLM----IYEAFGWEAPVFMHIPLILGSDRTPLSKRHGATSVEHFRR  270 (488)
T ss_dssp             SCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHH----HHHHHTCCCCEEEEECCEECTTSSBCCTTTSCCBHHHHHH
T ss_pred             CCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHH----HHHHcCCCCCeEEEEeeeeCCCCCcccCcCCcccHHHHHH
Confidence            399999996        9999999999999998876    55555544332233  23488999999999    899988


Q ss_pred             CC
Q 042647           79 II   80 (95)
Q Consensus        79 ~~   80 (95)
                      .|
T Consensus       271 ~G  272 (488)
T 3afh_A          271 EG  272 (488)
T ss_dssp             HT
T ss_pred             CC
Confidence            87

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=98.36  E-value=7.1e-08  Score=77.19  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=51.0

Q ss_pred             eEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EE-EecCceeehHHH----HHHh
Q 042647           11 YKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GV-VHLEGYKTTVLK----LTWL   76 (95)
Q Consensus        11 ~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~r-Lnl~g~k~SKrK----l~wL   76 (95)
                      |+-||+|+|||        |||++|+.|+..+.+...+    +.+.+....|...+ +. +|.+|.|||||+    +..+
T Consensus       185 ~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~----l~~alg~~~P~~~H~plil~~~g~KLSKr~g~~~l~~~  260 (492)
T 2cfo_A          185 EIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQIL----LYEALGATPPNFAHTPLILNSTGQKLSKRDGVTSISDF  260 (492)
T ss_dssp             SCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHH----HHHHTTCCCCEEEEECCEECSSSSBCCTTSSCCBHHHH
T ss_pred             CCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHH----HHHHcCCCCceEEEeeeEECCCCCEecccCCcccHHHH
Confidence            34699999997        9999999999999998776    44444443332233 22 789999999999    8988


Q ss_pred             hhCC
Q 042647           77 LEII   80 (95)
Q Consensus        77 ve~~   80 (95)
                      .+.|
T Consensus       261 r~~G  264 (492)
T 2cfo_A          261 RAMG  264 (492)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            8887

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=98.33  E-value=1.2e-07  Score=77.34  Aligned_cols=68  Identities=12%  Similarity=0.148  Sum_probs=53.4

Q ss_pred             CceEE-----eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-E-EEecCceeehHHH-
Q 042647            9 SNYKI-----YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-G-VVHLEGYKTTVLK-   72 (95)
Q Consensus         9 ~~~~i-----yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~-rLnl~g~k~SKrK-   72 (95)
                      +.+.|     ||||+|||        |||++|+.|+..+.+.+.+    +.+.+.-..|...+ . -+|.+|.|||||+ 
T Consensus       290 ~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~----l~~alg~~~P~~~hlpli~~~~g~KLSKR~g  365 (592)
T 3al0_C          290 EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLM----IYEAFGWEAPVFMHIPLILGSDRTPLSKRHG  365 (592)
T ss_dssp             CCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHH----HHTTTTCCCCBCCEECCCBCTTSSBCCTTTC
T ss_pred             CCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHH----HHHHhCCCCCeEEEeeeeeCCCCCcccccCC
Confidence            45777     99999996        9999999999999998876    55555544332223 2 2488999999999 


Q ss_pred             ---HHHhhhCC
Q 042647           73 ---LTWLLEII   80 (95)
Q Consensus        73 ---l~wLve~~   80 (95)
                         |.++.+.|
T Consensus       366 ~~~l~~~~~~G  376 (592)
T 3al0_C          366 ATSVEHFRREG  376 (592)
T ss_dssp             SSBHHHHHHTT
T ss_pred             cccHHHHHHCC
Confidence               89999988

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=98.32  E-value=6.7e-08  Score=72.93  Aligned_cols=63  Identities=11%  Similarity=0.075  Sum_probs=37.0

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEE-ecCceeehHHHHHHhhhCC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVV-HLEGYKTTVLKLTWLLEII   80 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rL-nl~g~k~SKrKl~wLve~~   80 (95)
                      +|+|+|||        |||++|+.|+..+.+....    +.+.+....|...+ +.+ |.+|.|||||+....++..
T Consensus       169 ~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~----l~~alG~~~p~~~H~pll~~~~g~KLSKR~g~~~v~~~  241 (298)
T 1nzj_A          169 LFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQIS----LYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPALPKG  241 (298)
T ss_dssp             CBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHH----HHHHHTCCCCEEEEECBCCC-------------CCCSS
T ss_pred             CEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHH----HHHHcCCCCCeEEEeeeeECCCCCcccccCCccChhcC
Confidence            89999997        9999999999988887665    44444444444455 554 8999999999998877764

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=98.29  E-value=1.4e-07  Score=75.66  Aligned_cols=66  Identities=14%  Similarity=0.027  Sum_probs=47.3

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhh--ccCCCccEE--EEEecCceeehHHH----HHHhh
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQI--SRNQDGNFT--GVVHLEGYKTTVLK----LTWLL   77 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i--~~~~~~~i~--~rLnl~g~k~SKrK----l~wLv   77 (95)
                      ||||+||+        |||++|+.|+.++.+.......++.. +  .-..|....  --+|.+|.|||||+    |..+.
T Consensus       193 ~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~g~~~P~~~h~plil~~~g~KLSKR~g~~~l~~~r  271 (498)
T 2ja2_A          193 DPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGVAERIPKFAHLPTVLGEGTKKLSKRDPQSNLFAHR  271 (498)
T ss_dssp             CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTSCCCCCEEEEECCEECSSSSBCCTTSGGGBHHHHH
T ss_pred             CcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcCCCCCCeEEEeeeeECCCCCcccccCCcccHHHHH
Confidence            99999995        99999999999999976663333322 2  222222222  23788999999999    67777


Q ss_pred             hCC
Q 042647           78 EII   80 (95)
Q Consensus        78 e~~   80 (95)
                      +.|
T Consensus       272 ~~G  274 (498)
T 2ja2_A          272 DRG  274 (498)
T ss_dssp             HHT
T ss_pred             hCC
Confidence            766

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=98.27  E-value=2.3e-07  Score=74.44  Aligned_cols=63  Identities=10%  Similarity=0.067  Sum_probs=48.9

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI   79 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~   79 (95)
                      +|||+|||        |||++|+.|+.++.+...+    +.+.+.-..|...+  --+|.+|.|+|||+    |..+.+.
T Consensus       205 ~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~----l~~aLG~~~P~f~HlpLi~~~~g~KLSKR~g~~sl~~~r~~  280 (490)
T 4g6z_A          205 TPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQIN----ILRALGGEVPVYAHLPTVLNEQGEKMSKRHGAMSVMGYRDA  280 (490)
T ss_dssp             CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHH----HHHHTTCCCCEEEEECCEECTTSSBCCTTTTCCBHHHHHHT
T ss_pred             CccchhHHHHHHHhcCCCEEEeccccccChHHHHH----HHHHcCCCCCeEEEecceeCCCCCcccCCCCCcCHHHHHHC
Confidence            79999996        9999999999999998777    44555544333333  34577899999996    7788888


Q ss_pred             C
Q 042647           80 I   80 (95)
Q Consensus        80 ~   80 (95)
                      |
T Consensus       281 G  281 (490)
T 4g6z_A          281 G  281 (490)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=98.13  E-value=5e-07  Score=72.01  Aligned_cols=64  Identities=9%  Similarity=0.112  Sum_probs=50.4

Q ss_pred             eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-E-EEecCceeehHHH----HHHhhhC
Q 042647           14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-G-VVHLEGYKTTVLK----LTWLLEI   79 (95)
Q Consensus        14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~-rLnl~g~k~SKrK----l~wLve~   79 (95)
                      +|||+|||        |||++|+.|+..+.+.+.+    +.+.+.-..|...+ . -++.+|.|||||+    |..+.+.
T Consensus       203 ~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~----l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~~~l~~~~~~  278 (481)
T 2o5r_A          203 LPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLA----LYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVEAFRDM  278 (481)
T ss_dssp             CBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHH----HHHHTTCCCCEEEEECCEECTTSSBCCGGGSCCBHHHHHHH
T ss_pred             CcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHH----HHHHcCCCCCeEEEEeeEECCCCCcccCcCCcccHHHHHHC
Confidence            99999996        9999999999999998777    55555544343333 3 3788999999999    8888887


Q ss_pred             Ce
Q 042647           80 IE   81 (95)
Q Consensus        80 ~~   81 (95)
                      |+
T Consensus       279 G~  280 (481)
T 2o5r_A          279 GY  280 (481)
T ss_dssp             TC
T ss_pred             CC
Confidence            73

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=92.68  E-value=0.00096  Score=54.25  Aligned_cols=62  Identities=13%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecC-------ceeehHHHHHHhhhCC----eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLE-------GYKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~-------g~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      .++++||+|++..++++.+++.|.++   ++++++       ..++.|.+|+|+.+..    .+..||+|++++++
T Consensus       406 g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~~~~~~~~~~yd~L~~~~~p  481 (553)
T 1qtq_A          406 GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP  481 (553)
T ss_dssp             TSEEEETTSCEEEEEEEECCSSSCCCEEEECCCSSCC-----------CEECCEESTTCEEEEEEEECCSBSSSCG
T ss_pred             CCEEEeccEEEEEEEEEEEcCCCCEEEEEEEEecccccCCCccccccCCEEEEeecCCCEeEEEEecccccCCCCC
Confidence            45677999887767788777666543   777775       2577778999998654    88899999999864

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=90.16  E-value=0.0052  Score=52.23  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=46.6

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecCceeehHHHHHHhhhCC----eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEGYKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      ..+++||+|+|..++.+.++++|.++   ++++.++ ++.|.+|+|+....    .+.-||+|++++++
T Consensus       464 g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~~~~~~~e~r~yd~Lf~~~~p  531 (851)
T 2hz7_A          464 GGTVRLRGAGIIRADDFGTDEAGQVTHIRATLLGED-AKAAGVIHWVSAERALPAEFRLYDRLFRVPHP  531 (851)
T ss_dssp             TCEEEETTTEEEEEEEEEECTTSCEEEEEEEECCTT-CCCSCEECCEETTTCEEEEEEEECCSBSSSCT
T ss_pred             CCEEEecCeEEEEEEEEEecCCCCEEEEEEEEcccC-CccCceEEEeecCCCeeEEEEecccccCCCCc
Confidence            45677999998778888777667665   6665444 56668999997654    78889999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1gtra2	331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	99.1
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	98.73
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	98.68
d1gtra1	209	Gln-tRNA synthetase (GlnRS), C-terminal (anticodon	96.63

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutaminyl-tRNA synthetase (GlnRS)
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.4e-11  Score=91.89  Aligned_cols=81  Identities=23%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             CCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccE-E-EEEecCceeehHHH
Q 042647            3 SHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNF-T-GVVHLEGYKTTVLK   72 (95)
Q Consensus         3 ~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i-~-~rLnl~g~k~SKrK   72 (95)
                      .|..++.++.++|||+||+        |||++|+.|+..+.+...+    +.+.+....|... . .+++++|.++|||+
T Consensus       190 ~~d~v~~r~dg~ptY~lA~vVDD~~~gIThViRG~D~l~~T~~q~~----l~~~Lg~~~p~~~h~~~~l~~~g~~lskr~  265 (331)
T d1gtra2         190 EHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDW----VLDNITIPVHPRQYEFSRLNLEYTVMSKRK  265 (331)
T ss_dssp             CBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHH----HHHHSCCSCCCEEEEECCCCBTTSCCCHHH
T ss_pred             CCcccccccccccHHhhhHHHhhhhhcccceecccccccccHHHHH----HHHhccCCCCcceeeccccccccchhhhcc
Confidence            4678889999999999995        9999999999999987666    5555555433333 3 88999999999999


Q ss_pred             HHHhhhCCeeccccc
Q 042647           73 LTWLLEIIELVGFDY   87 (95)
Q Consensus        73 l~wLve~~~v~~wDd   87 (95)
                      +..+++++.+.|||+
T Consensus       266 l~~~~~~~~~~~~dd  280 (331)
T d1gtra2         266 LNLLVTDKHVEGWDD  280 (331)
T ss_dssp             HHHHHHTTSSSSTTC
T ss_pred             cchhcccCccccccC
Confidence            999999999999998

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=5.8e-10  Score=81.17  Aligned_cols=66  Identities=11%  Similarity=0.028  Sum_probs=41.1

Q ss_pred             eEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHHHHHhhhCC
Q 042647           11 YKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLKLTWLLEII   80 (95)
Q Consensus        11 ~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrKl~wLve~~   80 (95)
                      .-.+|+|+|||        |||++|+.|+.++.+...+    +.+.+.-..|...+  ..+|.+|.|+|||+....++.+
T Consensus       163 ~dg~ptY~lA~vVDD~~~gIThViRG~D~l~st~~Q~~----L~~~lg~~~P~y~H~pli~~~~g~KLSKr~~~~~i~~~  238 (286)
T d1nzja_         163 RDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQIS----LYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPALPKG  238 (286)
T ss_dssp             TTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHH----HHHHHTCCCCEEEEECBCCC-------------CCCSS
T ss_pred             CCCCeeeeehhhhcccccccceecccccccchHHHHHH----HHHhhCCCccceeecceEEccCCcccccccCccchhcC
Confidence            34589999995        9999999999999987665    45555555566666  4778999999999999999887

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=8.4e-10  Score=80.84  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             CceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HH
Q 042647            9 SNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LT   74 (95)
Q Consensus         9 ~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~   74 (95)
                      .++..||+|+|||        |||++|+.|+.++.+.+.+    +.+.+....|...+  ..++.+|.|+|||+    |.
T Consensus       179 ~r~dg~p~Y~~A~vvDD~~~githviRG~Dl~~~t~~q~~----l~~~Lg~~~p~~~h~~l~~~~~g~KLSKr~~~~tl~  254 (305)
T d1j09a2         179 LKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVL----LYRAFGWEAPRFYHMPLLRNPDKTKISKRKSHTSLD  254 (305)
T ss_dssp             ECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHH----HHHHHTCCCCEEEEECCCBCTTSCBCCTTTSCCBHH
T ss_pred             ECCCCCeehHHHHHHHHHHccCccccccccceeccHHHHH----HHHhhcCCCCceeeecccccCccccccccCCccCHH
Confidence            3677899999996        9999999999999998776    55556665556666  67889999999995    56


Q ss_pred             HhhhCC
Q 042647           75 WLLEII   80 (95)
Q Consensus        75 wLve~~   80 (95)
                      .|-+.|
T Consensus       255 ~lr~~G  260 (305)
T d1j09a2         255 WYKAEG  260 (305)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            666665

>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
domain: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=6.8e-06  Score=57.50  Aligned_cols=62  Identities=13%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             cchHHHHHHHHHHHhhhccCCCccEE---EEEecC------c-eeehHHHHHHhhhCC----eecccccccccccc
Q 042647           33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLE------G-YKTTVLKLTWLLEII----ELVGFDYLITKKKV   94 (95)
Q Consensus        33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~------g-~k~SKrKl~wLve~~----~v~~wDdli~k~~~   94 (95)
                      ..+++||.|||..+.++.++++|.+.   ++++++      + .+++|.+|+|+....    .+..||+|++++++
T Consensus        68 g~~V~L~~~~~i~~~~v~~d~~g~v~~l~~~~~~~~~~~~~~~~kk~k~~i~Wv~~~~~v~~~~~~yd~Lf~~~~p  143 (209)
T d1gtra1          68 GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP  143 (209)
T ss_dssp             SSEEEETTSCEEEEEEEEECSSSCEEEEEECCCSCCC-----------CEECCEETTTCEEEEEEEECCSBSSSCG
T ss_pred             CceeEEeccceEEeEEEeccCCcceEEEEEEeccccccCCcccceeecccceeccCCcceeeEEEEeccccccCCc
Confidence            34577999999889999888777655   777776      3 566777899996544    88999999999864