Citrus Sinensis ID: 042649

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MEFVGSASTQSCITQKRGRRVYGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMESSSEESERPRNDEINAAEEMKKHGIEEKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKSI
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHcccccccccccEEEEEccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEccccccccHHHHHHHHHHHHHHc
cEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHccccccccEEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHHHcc
mefvgsastqscitqkrgrrvygddrdfksknLTAERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLemessseeserprndEINAAEEMKKHGIEEKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMAshgfelsdtnvttfkGATLISSCLNGVYSYKIEAEQVKELLQEIIKSI
mefvgsastqscitqkrgrrvygddrdfksknltaerrrreklsnrlltlrslvpiitnmnkaTIVEDAITYIEKLQMTVKVLSDQLLEMessseeserprndeINAAEEmkkhgieekvevtnvdgcklwiriiskkkrsRITKFLEAmashgfelsdtnvtTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKSI
MEFVGSASTQSCITQKRGRRVYGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMessseeseRPRNDEINAAEEMKKHGIEEKVEVTNVDGCKLWiriiskkkrsriTKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKSI
*********************************************RLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSD*********************************KVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEI****
***************************************REKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQ***********************************************VDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKS*
*****************GRRVYGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQL***************DEINAAEEMKKHGIEEKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKSI
****************************KSKNLTAERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEME**********************HGIEEKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKSI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEFVGSASTQSCITQKRGRRVYGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYxxxxxxxxxxxxxxxxxxxxxSEESERPRNDEINAAEEMKKHGIEEKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query199 2.2.26 [Sep-21-2011]
O81900207 Transcription factor DYSF yes no 0.959 0.922 0.432 2e-34
Q9ZVX2571 Transcription factor ABOR no no 0.814 0.283 0.312 6e-19
Q2HIV9248 Transcription factor bHLH no no 0.341 0.274 0.529 4e-12
Q9LPW3450 Transcription factor SCRE no no 0.793 0.351 0.292 1e-11
Q0V7X4318 Transcription factor FER- no no 0.829 0.518 0.287 2e-11
Q9LSE2494 Transcription factor ICE1 no no 0.809 0.325 0.285 2e-11
Q9ZPY8566 Transcription factor ABA- no no 0.417 0.146 0.428 3e-11
Q0WNR2441 Transcription factor bHLH no no 0.688 0.310 0.315 8e-11
Q700E3263 Transcription factor bHLH no no 0.402 0.304 0.432 5e-10
Q9LNJ5590 Transcription factor bHLH no no 0.396 0.133 0.412 1e-09
>sp|O81900|DYT1_ARATH Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 126/206 (61%), Gaps = 15/206 (7%)

Query: 5   GSASTQSCITQKRGRRVYGD---DRDFKSKNLTAERRRREKLSNRLLTLRSLVPIITNMN 61
           G +  Q  +   R ++V  +   D +FKS NL AERRRREKL  RL+ LRS VPI+TNM 
Sbjct: 3   GGSRFQEPVRMSRRKQVTKEKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMT 62

Query: 62  KATIVEDAITYIEKLQMTVKVLSDQLLEMESSSEESERPRNDEI--------NAAEEMKK 113
           KA+IVEDAITYI +LQ  VK L +   EME +  E +  + D +        +  EEMKK
Sbjct: 63  KASIVEDAITYIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDLNEEMKK 122

Query: 114 HGIEEKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISS 173
            GIEE V++  +   K W++II++K+    TKF+E M   GFE+ D ++TT  GA LIS+
Sbjct: 123 LGIEENVQLCKIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAILISA 182

Query: 174 CLNGVYSYKI-EAEQVKELLQEIIKS 198
               V + ++ + EQ K+ L E+++S
Sbjct: 183 ---SVQTQELCDVEQTKDFLLEVMRS 205
Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2 Back     alignment and function description
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1 Back     alignment and function description
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1 Back     alignment and function description
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|Q0WNR2|BH090_ARATH Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1 Back     alignment and function description
>sp|Q700E3|BH027_ARATH Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
359496236204 PREDICTED: transcription factor DYSFUNCT 1.0 0.975 0.598 3e-57
147791425204 hypothetical protein VITISV_006000 [Viti 1.0 0.975 0.583 5e-54
359496224204 PREDICTED: transcription factor DYSFUNCT 1.0 0.975 0.583 5e-54
255555099207 DNA binding protein, putative [Ricinus c 1.0 0.961 0.565 3e-49
224078792209 predicted protein [Populus trichocarpa] 1.0 0.952 0.549 1e-47
356557625213 PREDICTED: transcription factor DYSFUNCT 0.909 0.849 0.549 3e-46
356557627218 PREDICTED: transcription factor DYSFUNCT 0.909 0.830 0.549 1e-45
356546706208 PREDICTED: transcription factor DYSFUNCT 0.984 0.942 0.527 1e-44
356546704194 PREDICTED: LOW QUALITY PROTEIN: transcri 0.894 0.917 0.502 2e-40
356519517223 PREDICTED: transcription factor DYSFUNCT 0.854 0.762 0.557 2e-40
>gi|359496236|ref|XP_003635187.1| PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/204 (59%), Positives = 155/204 (75%), Gaps = 5/204 (2%)

Query: 1   MEFVGSASTQSCITQKRGR-----RVYGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVP 55
           ME+   A   SC+++  G      R+ G +R++KSKNL AERRRR+KLS+RLL LR+LVP
Sbjct: 1   MEYADCAPDGSCVSEGAGSGKGRMRMRGQEREYKSKNLQAERRRRQKLSDRLLALRALVP 60

Query: 56  IITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMESSSEESERPRNDEINAAEEMKKHG 115
           IITNMNKATI+EDAITYI++LQ  VK LSDQLLEME+SSEE  + R++ I+AAEEM K G
Sbjct: 61  IITNMNKATIIEDAITYIKELQKNVKDLSDQLLEMEASSEEEAKQRSETIDAAEEMNKCG 120

Query: 116 IEEKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCL 175
           IEE VEVTN+DG K W++I+ +KKRS  TK +EAM   GFE +DT+VTT KGA LI++C+
Sbjct: 121 IEEDVEVTNIDGNKFWLKIVIQKKRSSFTKLVEAMNFLGFEFTDTSVTTSKGAILITACV 180

Query: 176 NGVYSYKIEAEQVKELLQEIIKSI 199
            G+Y     A + +ELLQEIIK I
Sbjct: 181 EGIYGETFAAAETRELLQEIIKGI 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147791425|emb|CAN76852.1| hypothetical protein VITISV_006000 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496224|ref|XP_003635181.1| PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555099|ref|XP_002518587.1| DNA binding protein, putative [Ricinus communis] gi|223542432|gb|EEF43974.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224078792|ref|XP_002305631.1| predicted protein [Populus trichocarpa] gi|222848595|gb|EEE86142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557625|ref|XP_003547116.1| PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356557627|ref|XP_003547117.1| PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356546706|ref|XP_003541764.1| PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356546704|ref|XP_003541763.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356519517|ref|XP_003528419.1| PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
TAIR|locus:2141206207 DYT1 "AT4G21330" [Arabidopsis 0.959 0.922 0.412 3.4e-29
TAIR|locus:2039445571 AMS "AT2G16910" [Arabidopsis t 0.366 0.127 0.493 3.8e-17
UNIPROTKB|Q6YUS3552 OSJNBb0088N06.15 "BHLH protein 0.286 0.103 0.596 4.2e-16
UNIPROTKB|Q2R3F6524 Os11g0523700 "Helix-loop-helix 0.326 0.124 0.461 8.7e-12
TAIR|locus:2142419315 AT5G10570 "AT5G10570" [Arabido 0.773 0.488 0.286 1.4e-11
UNIPROTKB|Q58GE3234 UDT1 "Undeveloped tapetum 1" [ 0.708 0.602 0.309 1.7e-11
TAIR|locus:2155725351 bHLH093 "AT5G65640" [Arabidops 0.839 0.475 0.290 3.3e-11
TAIR|locus:2090847494 ICE1 "AT3G26744" [Arabidopsis 0.326 0.131 0.461 3.8e-11
TAIR|locus:2039094566 AIB "AT2G46510" [Arabidopsis t 0.356 0.125 0.458 1.1e-10
UNIPROTKB|Q84LF9310 RERJ1 "Transcription Factor" [ 0.391 0.251 0.397 3e-10
TAIR|locus:2141206 DYT1 "AT4G21330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 85/206 (41%), Positives = 115/206 (55%)

Query:     5 GSASTQSCITQKRGRRVYGD---DRDFKSKNLTAERRRREKLSNRLLTLRSLVPIITNMN 61
             G +  Q  +   R ++V  +   D +FKS NL AERRRREKL  RL+ LRS VPI+TNM 
Sbjct:     3 GGSRFQEPVRMSRRKQVTKEKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMT 62

Query:    62 KATIVEDAITYIEKLQMTVKVLSDQLLEMXXXXXXXXRPRND-----EINAA---EEMKK 113
             KA+IVEDAITYI +LQ  VK L +   EM          + D     E+  +   EEMKK
Sbjct:    63 KASIVEDAITYIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDLNEEMKK 122

Query:   114 HGIEEKVEVTNVDGCKLWXXXXXXXXXXXXTKFLEAMASHGFELSDTNVTTFKGATLISS 173
              GIEE V++  +   K W            TKF+E M   GFE+ D ++TT  GA LIS+
Sbjct:   123 LGIEENVQLCKIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAILISA 182

Query:   174 CLNGVYSYKI-EAEQVKELLQEIIKS 198
                 V + ++ + EQ K+ L E+++S
Sbjct:   183 ---SVQTQELCDVEQTKDFLLEVMRS 205
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS
GO:0048658 "tapetal layer development" evidence=IMP
TAIR|locus:2039445 AMS "AT2G16910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YUS3 OSJNBb0088N06.15 "BHLH protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q2R3F6 Os11g0523700 "Helix-loop-helix DNA-binding domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2142419 AT5G10570 "AT5G10570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q58GE3 UDT1 "Undeveloped tapetum 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2155725 bHLH093 "AT5G65640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090847 ICE1 "AT3G26744" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84LF9 RERJ1 "Transcription Factor" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81900DYT1_ARATHNo assigned EC number0.43200.95970.9227yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00040157
hypothetical protein (209 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-08
smart0035353 smart00353, HLH, helix loop helix domain 1e-07
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 5e-07
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 25 DRDFKSKNLTAERRRREKLSNRLLTLRSLVPIITN---MNKATIVEDAITYIEKLQ 77
           +  +  +   ERRRRE++++    LRSL+P +     ++KA I+  A+ YI+ LQ
Sbjct: 1  RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQ 56

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 199
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.49
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.48
smart0035353 HLH helix loop helix domain. 99.44
KOG1318411 consensus Helix loop helix transcription factor EB 98.97
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.96
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.87
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.85
KOG3960284 consensus Myogenic helix-loop-helix transcription 98.69
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 98.62
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.61
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 98.59
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.44
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 98.42
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.41
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.35
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 98.2
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 98.17
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 98.11
KOG0561 373 consensus bHLH transcription factor [Transcription 98.04
PLN0321793 transcription factor ATBS1; Provisional 97.99
PRK05007884 PII uridylyl-transferase; Provisional 97.91
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 97.9
KOG4029228 consensus Transcription factor HAND2/Transcription 97.87
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 97.81
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 97.78
PRK01759854 glnD PII uridylyl-transferase; Provisional 97.77
PRK00275895 glnD PII uridylyl-transferase; Provisional 97.75
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 97.73
PRK04374869 PII uridylyl-transferase; Provisional 97.72
PRK03381 774 PII uridylyl-transferase; Provisional 97.62
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 97.54
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.54
PRK0019490 hypothetical protein; Validated 97.52
PRK05092931 PII uridylyl-transferase; Provisional 97.5
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 97.45
PRK03381774 PII uridylyl-transferase; Provisional 97.41
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 97.41
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 97.38
PRK03059856 PII uridylyl-transferase; Provisional 97.36
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 97.36
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 97.33
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 97.33
PRK05007 884 PII uridylyl-transferase; Provisional 97.29
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 97.27
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 97.26
PRK01759 854 glnD PII uridylyl-transferase; Provisional 97.24
PRK00275 895 glnD PII uridylyl-transferase; Provisional 96.92
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 96.78
PRK03059 856 PII uridylyl-transferase; Provisional 96.69
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 96.64
PRK05092 931 PII uridylyl-transferase; Provisional 96.59
PRK04374 869 PII uridylyl-transferase; Provisional 96.51
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 96.43
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 96.39
PRK04435147 hypothetical protein; Provisional 96.25
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 96.24
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 96.22
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 96.0
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 95.98
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 95.84
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 95.83
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 95.76
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 95.75
cd0211660 ACT ACT domains are commonly involved in specifica 95.69
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 95.66
PRK08577136 hypothetical protein; Provisional 95.51
KOG4447173 consensus Transcription factor TWIST [Transcriptio 95.45
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 95.29
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 95.17
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 95.11
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 95.05
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 94.72
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 94.58
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 94.57
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 94.48
PRK11589 190 gcvR glycine cleavage system transcriptional repre 94.41
KOG3910632 consensus Helix loop helix transcription factor [T 94.39
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 94.06
KOG3898254 consensus Transcription factor NeuroD and related 93.86
COG383090 ACT domain-containing protein [Signal transduction 93.79
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 93.78
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 93.67
PRK07334403 threonine dehydratase; Provisional 93.54
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 93.21
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 92.98
KOG4395285 consensus Transcription factor Atonal, contains HT 92.25
COG0788 287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 92.17
cd0490273 ACT_3PGDH-xct C-terminal ACT (regulatory) domain o 91.61
PRK11589190 gcvR glycine cleavage system transcriptional repre 91.56
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 91.49
TIGR00119157 acolac_sm acetolactate synthase, small subunit. ac 91.24
PRK00227693 glnD PII uridylyl-transferase; Provisional 91.16
PF05088 1528 Bac_GDH: Bacterial NAD-glutamate dehydrogenase 91.02
CHL00100 174 ilvH acetohydroxyacid synthase small subunit 90.98
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 90.88
PRK1356284 acetolactate synthase 1 regulatory subunit; Provis 90.82
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 90.71
cd0492974 ACT_TPH ACT domain of the nonheme iron-dependent a 90.51
PRK11895161 ilvH acetolactate synthase 3 regulatory subunit; R 90.46
PF1371063 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. 90.14
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 89.86
PRK11092702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 89.81
COG4492150 PheB ACT domain-containing protein [General functi 89.58
PRK10872743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 89.01
PRK0673776 acetolactate synthase 1 regulatory subunit; Valida 89.01
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 88.84
TIGR00691683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 88.25
cd04930115 ACT_TH ACT domain of the nonheme iron-dependent ar 86.08
cd0492266 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona 85.91
PRK11899279 prephenate dehydratase; Provisional 82.91
PRK08198404 threonine dehydratase; Provisional 82.71
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 82.04
COG4747142 ACT domain-containing protein [General function pr 81.61
cd0489265 ACT_AK-like_2 ACT domains C-terminal to the cataly 80.51
cd0490685 ACT_ThrD-I_1 First of two tandem C-terminal ACT do 80.28
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.49  E-value=4.5e-14  Score=93.32  Aligned_cols=54  Identities=35%  Similarity=0.588  Sum_probs=50.4

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHHHH
Q 042649           27 DFKSKNLTAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQMTV   80 (199)
Q Consensus        27 ~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~~~   80 (199)
                      ..+..|+..||+||++||..|..|+++||..   .|+||++||..||+||+.|+.++
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999988   79999999999999999999876

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription] Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00119 acolac_sm acetolactate synthase, small subunit Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase Back     alignment and domain information
>CHL00100 ilvH acetohydroxyacid synthase small subunit Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes Back     alignment and domain information
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed Back     alignment and domain information
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) Back     alignment and domain information
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>PRK11899 prephenate dehydratase; Provisional Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>COG4747 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) Back     alignment and domain information
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 3e-10
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-08
1hlo_A80 Protein (transcription factor MAX); transcriptiona 1e-07
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 8e-07
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 2e-06
1a0a_A63 BHLH, protein (phosphate system positive regulator 4e-04
4f3l_A 361 Mclock, circadian locomoter output cycles protein 4e-04
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 5e-04
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 35  AERRRREKLSNRLLTLRSLVPIITN-MNKATIVEDAITYIEKLQMTVKVLSDQLLEMESS 93
            E+R R  ++++++ L+ LV      +NK+ ++  AI YI  LQ + + L  + L + ++
Sbjct: 13  IEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72

Query: 94  SEESERPR 101
             +S+  +
Sbjct: 73  VHKSKSLK 80
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.74
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.66
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.65
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.65
4ati_A118 MITF, microphthalmia-associated transcription fact 99.64
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.61
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.61
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.6
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.57
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.53
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.51
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.35
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.31
4f3l_A 361 Mclock, circadian locomoter output cycles protein 99.04
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.89
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.83
4ath_A83 MITF, microphthalmia-associated transcription fact 98.61
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 98.37
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 97.89
1u8s_A 192 Glycine cleavage system transcriptional repressor, 97.4
2nyi_A 195 Unknown protein; protein structure initiative, PSI 97.17
2nyi_A195 Unknown protein; protein structure initiative, PSI 96.89
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 96.82
1u8s_A192 Glycine cleavage system transcriptional repressor, 96.59
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 96.32
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 96.12
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 96.03
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 95.95
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 95.54
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 94.73
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 94.46
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 94.38
1y7p_A 223 Hypothetical protein AF1403; structural genomics, 93.55
2pc6_A165 Probable acetolactate synthase isozyme III (small; 92.87
2fgc_A193 Acetolactate synthase, small subunit; regulatory s 90.15
2f06_A144 Conserved hypothetical protein; structural genomic 87.63
2f06_A144 Conserved hypothetical protein; structural genomic 82.02
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.74  E-value=1.8e-18  Score=121.34  Aligned_cols=67  Identities=24%  Similarity=0.435  Sum_probs=62.9

Q ss_pred             ccccccccHHHHHHHHHHHHHHHHHhccCCCC-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649           26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPII-TNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES   92 (199)
Q Consensus        26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~   92 (199)
                      ...+.+|+.+||+||++||+.|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+...|+.
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   71 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999987 79999999999999999999999999999988764
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 199
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 2e-09
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 6e-09
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 4e-08
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 2e-07
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 5e-07
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 7e-07
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 9e-07
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 1e-06
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 2e-09
 Identities = 13/60 (21%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 40 REKLSNRLLTLRSLVPIITN-MNKATIVEDAITYIEKLQMTVKVLSDQLLEMESSSEESE 98
          R  ++++++ L+ LV      M+K+ ++  AI YI+ LQ     L  + + ++ ++++++
Sbjct: 1  RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKNK 60
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.66
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.61
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.6
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.6
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.58
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.53
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 98.03
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 97.75
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 97.38
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 96.57
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 96.09
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 95.76
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 92.68
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 92.23
d1ygya378 Phosphoglycerate dehydrogenase, regulatory (C-term 90.96
d1phza197 Phenylalanine hydroxylase N-terminal domain {Rat ( 90.51
d2f1fa176 Acetolactate synthase small subunit, IlvH {Escheri 87.65
d2qmwa280 Prephenate dehydratase C-terminal domain {Staphylo 87.57
d2pc6a277 Acetolactate synthase small subunit, IlvH {Nitroso 85.18
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.6e-17  Score=111.49  Aligned_cols=66  Identities=24%  Similarity=0.447  Sum_probs=60.7

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHhccCCCC-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649           27 DFKSKNLTAERRRREKLSNRLLTLRSLVPII-TNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES   92 (199)
Q Consensus        27 ~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~   92 (199)
                      ..+..|+.+||+||++||+.|..|++|||+. .|+||++||..||+||+.|+.+++.|..+...++.
T Consensus         5 ~kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~   71 (80)
T d1am9a_           5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999975 49999999999999999999999999999887654
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure