Citrus Sinensis ID: 042714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVIDGCGMSGGRAAREKIRGLLR
Secondary Structure (PSIPRED)
cccEEEEEEEEEccccccccccEEEEEEEEccccEEEEcccccccccccccccEEcccEEEEEEEccccccccEEEEEEEccccccccEEEEEEEEEEccccccccEEEEEccEEcccccccccEEEEEcccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEccccccccEEEEEcHHHcccccccccEEEEEccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
DDYCVYTLYVktgsgiksgtdskISIAlgdavgrsvwvpdlkswglmgphhdyyergnvdvfsgrgpcigspicnlnvssdgsgmfpsWYCEYVEvtstgphrscdqsafyvdqwlssrmppfestavidgcgmsggrAAREKIRGLLR
Flexible Loop (DISEMBL)
DDYCVYTLYvktgsgiksgtdsKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTavidgcgmsggrAAREKIRGLLR
Low Complexity Region (SEG)
DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVIDGCGMSGGRAAREKIRGLLR
Disordered region (IsUnstruct)
**YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVIDGC*****************
Disordered Region (DISOPRED)
DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAV***************IRG***
Disordered Region (DISEMBL)
DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVIDGCGMSGGRAAREKIRGLLR
Disordered Region (DISPRO)
DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVIDGCGMSGG************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVIDGCGMSGGRAAREKIRGLLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
C8YR32	2068	Lipoxygenase homology dom	yes	no	0.704	0.050	0.294	4e-05
Q8IVV2	1947	Lipoxygenase homology dom	no	no	0.704	0.053	0.294	6e-05

>sp|C8YR32|LOXH1_MOUSE Lipoxygenase homology domain-containing protein 1 OS=Mus musculus GN=Loxhd1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 2    DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRS--VWVPDLKSWGLMGPHHDYYERGNV 59
            ++  YT+ VKT   + +GTD+ + I +    G S  + +    +W       + +ER N 
Sbjct: 1678 EWTSYTVSVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANW-------NKFERNNT 1730

Query: 60   DVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQS-AFYVDQWLS 117
            D F+         +C L V  D  G+FP W+  YV+V       S D++  F  D WLS
Sbjct: 1731 DTFNFSDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDN----SRDETFRFQCDCWLS 1785

Required for normal function of hair cells in the inner ear.
Mus musculus (taxid: 10090)

>sp|Q8IVV2|LOXH1_HUMAN Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3

 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 2    DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRS--VWVPDLKSWGLMGPHHDYYERGNV 59
            ++  YT+ VKT   + +GTD+ + I +    G S  + +    +W       + +ER N 
Sbjct: 1605 EWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANW-------NKFERNNT 1657

Query: 60   DVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQS-AFYVDQWLS 117
            D F+         +C L V  D  G+FP W+  YV+V       S D++  F  D WLS
Sbjct: 1658 DTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDN----SRDETFHFQCDCWLS 1712

Involved in hearing. Required for normal function of hair cells in the inner ear.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
255539833	181	conserved hypothetical protein [Ricinus	0.899	0.740	0.708	2e-52
224071497	130	predicted protein [Populus trichocarpa]	0.865	0.992	0.705	2e-51
296085917	211	unnamed protein product [Vitis vinifera]	0.986	0.696	0.637	4e-49
225439241	183	PREDICTED: lipoxygenase homology domain-	0.986	0.803	0.637	4e-49
449456466	170	PREDICTED: lipoxygenase homology domain-	0.986	0.864	0.604	2e-47
449526962	163	PREDICTED: lipoxygenase homology domain-	0.986	0.901	0.604	2e-47
359496362	175	PREDICTED: uncharacterized protein LOC10	0.953	0.811	0.531	2e-38
217071160	191	unknown [Medicago truncatula] gi|3885152	0.966	0.753	0.496	2e-37
357463395	191	Elicitor-inducible protein EIG-J7 [Medic	0.966	0.753	0.496	3e-37
255584854	177	conserved hypothetical protein [Ricinus	0.865	0.728	0.523	6e-37

>gi|255539833|ref|XP_002510981.1| conserved hypothetical protein [Ricinus communis] gi|223550096|gb|EEF51583.1| conserved hypothetical protein [Ricinus communis]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/134 (70%), Positives = 114/134 (85%)

Query: 1   DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVD 60
           DD CVYTLYVKTGS IK+GTDSKIS+ LGD+ GRSVWV DL+SWGLMGP HDYYERGN+D
Sbjct: 23  DDECVYTLYVKTGSIIKAGTDSKISLTLGDSQGRSVWVTDLESWGLMGPKHDYYERGNLD 82

Query: 61  VFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120
           +FSGRG CIG+PIC LN++SDGSG    WYC+Y+EVTSTG H+ C Q+ FYVDQWL++ +
Sbjct: 83  IFSGRGRCIGTPICRLNLTSDGSGPHHGWYCDYIEVTSTGLHKECSQTIFYVDQWLATDV 142

Query: 121 PPFESTAVIDGCGM 134
            P++ TA IDGCG+
Sbjct: 143 APYKLTAEIDGCGL 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071497|ref|XP_002303488.1| predicted protein [Populus trichocarpa] gi|222840920|gb|EEE78467.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 110/129 (85%)

Query: 4   CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFS 63
           C+Y LYVKTGS +K+GTDSKIS+ LGDA GRSVWVPDL+SWGLM P HDYYER N+D+FS
Sbjct: 2   CIYALYVKTGSIMKAGTDSKISLTLGDAQGRSVWVPDLQSWGLMEPKHDYYERANLDIFS 61

Query: 64  GRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPF 123
           GRGPCI +PIC LN++SDG G    WYC+YVEVTSTGPH+ C Q+ FYVDQWL++ +PPF
Sbjct: 62  GRGPCISAPICRLNLTSDGQGSHHGWYCDYVEVTSTGPHKECSQTIFYVDQWLAADVPPF 121

Query: 124 ESTAVIDGC 132
           + TA++DGC
Sbjct: 122 KLTALLDGC 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085917|emb|CBI31241.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 115/149 (77%), Gaps = 2/149 (1%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
           D CVY LYVKTGS  K+GTDS ISI L D  G+SV V DL+SWGLMG +H+YYERGN+DV
Sbjct: 58  DNCVYALYVKTGSVPKAGTDSNISITLSDPGGKSVRVSDLESWGLMGSNHNYYERGNMDV 117

Query: 62  FSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP 121
           FSGRGPCIG+PIC LN++SDGSG    WYC+YVEVT+TGPHR C Q+ FYVDQWL+S  P
Sbjct: 118 FSGRGPCIGAPICRLNLTSDGSGEHHGWYCDYVEVTATGPHRPCGQTIFYVDQWLASDAP 177

Query: 122 PFESTAVIDGCGMS--GGRAAREKIRGLL 148
           P++ TAV+DGC +     ++ R  +R  L
Sbjct: 178 PYQLTAVVDGCRLENIAAKSGRLVLRNSL 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439241|ref|XP_002277128.1| PREDICTED: lipoxygenase homology domain-containing protein 1-like [Vitis vinifera]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 115/149 (77%), Gaps = 2/149 (1%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
           D CVY LYVKTGS  K+GTDS ISI L D  G+SV V DL+SWGLMG +H+YYERGN+DV
Sbjct: 30  DNCVYALYVKTGSVPKAGTDSNISITLSDPGGKSVRVSDLESWGLMGSNHNYYERGNMDV 89

Query: 62  FSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP 121
           FSGRGPCIG+PIC LN++SDGSG    WYC+YVEVT+TGPHR C Q+ FYVDQWL+S  P
Sbjct: 90  FSGRGPCIGAPICRLNLTSDGSGEHHGWYCDYVEVTATGPHRPCGQTIFYVDQWLASDAP 149

Query: 122 PFESTAVIDGCGMS--GGRAAREKIRGLL 148
           P++ TAV+DGC +     ++ R  +R  L
Sbjct: 150 PYQLTAVVDGCRLENIAAKSGRLVLRNSL 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456466|ref|XP_004145970.1| PREDICTED: lipoxygenase homology domain-containing protein 1-like [Cucumis sativus]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 115/149 (77%), Gaps = 2/149 (1%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
           + CVYTLYVKTGS +K GTDSKIS+ LGD+ G+SV + DL+SWGLM   HDY+ER N+D+
Sbjct: 10  EKCVYTLYVKTGSILKGGTDSKISVTLGDSRGQSVEISDLESWGLMKQGHDYFERDNIDI 69

Query: 62  FSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP 121
           FSGRG C+ SP+C LN++SDGSG    W+C+YVEVTS GPHR+C Q+AFYVDQWL++  P
Sbjct: 70  FSGRGVCLESPVCRLNLTSDGSGSHHGWFCDYVEVTSAGPHRACSQTAFYVDQWLATDAP 129

Query: 122 PFESTAVIDGCG--MSGGRAAREKIRGLL 148
           PF+ T ++DGC   +SG  A+R    G L
Sbjct: 130 PFQLTTILDGCDDWLSGHGASRHMHSGKL 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526962|ref|XP_004170482.1| PREDICTED: lipoxygenase homology domain-containing protein 1-like [Cucumis sativus]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 115/149 (77%), Gaps = 2/149 (1%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
           + CVYTLYVKTGS +K GTDSKIS+ LGD+ G+SV + DL+SWGLM   HDY+ER N+D+
Sbjct: 3   EKCVYTLYVKTGSILKGGTDSKISVTLGDSRGQSVEISDLESWGLMKQGHDYFERDNIDI 62

Query: 62  FSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP 121
           FSGRG C+ SP+C LN++SDGSG    W+C+YVEVTS GPHR+C Q+AFYVDQWL++  P
Sbjct: 63  FSGRGVCLESPVCRLNLTSDGSGSHHGWFCDYVEVTSAGPHRACSQTAFYVDQWLATDAP 122

Query: 122 PFESTAVIDGCG--MSGGRAAREKIRGLL 148
           PF+ T ++DGC   +SG  A+R    G L
Sbjct: 123 PFQLTTILDGCDDWLSGHGASRHMHSGKL 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496362|ref|XP_003635219.1| PREDICTED: uncharacterized protein LOC100854560 [Vitis vinifera] gi|296090614|emb|CBI40998.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 4   CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWG-LMGPHHDYYERGNVDVF 62
           CV+T+YV+TGS IK GTDS IS+ L DA G  V +P+L++WG +M P H+YYERGN+D+F
Sbjct: 26  CVFTVYVRTGSAIKGGTDSIISLRLYDANGWYVEIPNLEAWGGIMEPGHNYYERGNLDIF 85

Query: 63  SGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP 122
           SGR PC+ +P C LN++SDGSG    WYC YVEVT+TGPH  C Q  F V+QWL++ + P
Sbjct: 86  SGRAPCLTAPACALNLTSDGSGDNHGWYCNYVEVTTTGPHVPCAQQLFTVEQWLATDISP 145

Query: 123 FESTAVIDGCGMSGGRAAREKIR 145
           FE TA+ + C     R +   ++
Sbjct: 146 FELTAIRNSCSYGVDRLSHAVMK 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071160|gb|ACJ83940.1| unknown [Medicago truncatula] gi|388515293|gb|AFK45708.1| unknown [Medicago truncatula]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 104/145 (71%), Gaps = 1/145 (0%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWG-LMGPHHDYYERGNVD 60
           D CVYT+YV+TGS IK+GTDS +++ L +A G  + + DL++WG LMG  ++Y+ERGN+D
Sbjct: 25  DDCVYTVYVRTGSIIKAGTDSIMTLTLYNANGYGILIRDLEAWGGLMGSGYNYFERGNLD 84

Query: 61  VFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120
           +FSGRGPC+  P+CN+N++SDGSG    WYC YVEVT+TG H  C Q  F V+QWL++  
Sbjct: 85  IFSGRGPCLDGPVCNMNLTSDGSGSHHGWYCNYVEVTTTGAHIPCAQQQFEVEQWLATDT 144

Query: 121 PPFESTAVIDGCGMSGGRAAREKIR 145
            P+E +A+ + C  +    A  K++
Sbjct: 145 SPYELSAIRNNCQYNNLGQAHHKLK 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463395|ref|XP_003601979.1| Elicitor-inducible protein EIG-J7 [Medicago truncatula] gi|355491027|gb|AES72230.1| Elicitor-inducible protein EIG-J7 [Medicago truncatula] gi|388500744|gb|AFK38438.1| unknown [Medicago truncatula]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 104/145 (71%), Gaps = 1/145 (0%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWG-LMGPHHDYYERGNVD 60
           D CVYT+YV+TGS IK+GTDS +++ L +A G  + + DL++WG LMG  ++Y+ERGN+D
Sbjct: 25  DDCVYTVYVRTGSIIKAGTDSIMTLTLYNADGYGILIRDLEAWGGLMGSGYNYFERGNLD 84

Query: 61  VFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120
           +FSGRGPC+  P+CN+N++SDGSG    WYC YVEVT+TG H  C Q  F V+QWL++  
Sbjct: 85  IFSGRGPCLDGPVCNMNLTSDGSGSHHGWYCNYVEVTTTGAHIPCAQQQFEVEQWLATDT 144

Query: 121 PPFESTAVIDGCGMSGGRAAREKIR 145
            P+E +A+ + C  +    A  K++
Sbjct: 145 SPYELSAIRNNCQYNNLGQAHHKLK 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584854|ref|XP_002533143.1| conserved hypothetical protein [Ricinus communis] gi|223527054|gb|EEF29239.1| conserved hypothetical protein [Ricinus communis]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/130 (52%), Positives = 99/130 (76%), Gaps = 1/130 (0%)

Query: 4   CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWG-LMGPHHDYYERGNVDVF 62
           CVY +Y++TGS IK GTDS IS+   DA G  V +P+L++WG LMGP+++Y+ERGN+D+F
Sbjct: 26  CVYNVYIRTGSIIKGGTDSIISVRFYDAYGEYVEIPNLETWGGLMGPNYNYFERGNLDIF 85

Query: 63  SGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP 122
           SGR PC+ +P+C +N++SDG+G    WYC YVEV+++G H +C Q  F V+QWL++  PP
Sbjct: 86  SGRAPCLSAPVCAMNLTSDGTGPNHGWYCNYVEVSTSGVHATCSQQQFTVEQWLATDAPP 145

Query: 123 FESTAVIDGC 132
           +E TA+ + C
Sbjct: 146 YELTAIRNYC 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2060410	183	PLAT2 "AT2G22170" [Arabidopsis	0.885	0.721	0.503	5.1e-35
TAIR|locus:2135217	181	PLAT1 "AT4G39730" [Arabidopsis	0.885	0.729	0.503	2.8e-34
TAIR|locus:1009023406	104	PLAT3 "AT5G65158" [Arabidopsis	0.677	0.971	0.524	1.2e-26
TAIR|locus:2182865	213	ATS3 "AT5G07190" [Arabidopsis	0.604	0.422	0.346	5.4e-08
MGI|MGI:1914609	2068	Loxhd1 "lipoxygenase homology	0.718	0.051	0.307	8.1e-06
UNIPROTKB|Q8IVV2	1947	LOXHD1 "Lipoxygenase homology	0.718	0.054	0.307	1.2e-05
TAIR|locus:4515102981	179	AT2G41475 "AT2G41475" [Arabido	0.563	0.469	0.322	3.6e-05
UNIPROTKB|E1BC86	4301	LOC504986 "Uncharacterized pro	0.697	0.024	0.321	0.00066

TAIR|locus:2060410 PLAT2 "AT2G22170" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 67/133 (50%), Positives = 95/133 (71%)

Query:     4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWG-LMGPHHDYYERGNVDVF 62
             CVYT +++TGS  K+GTDS IS  + D  G  + + +L++WG LMGP ++YYERGN+D+F
Sbjct:    31 CVYTFFLRTGSTFKAGTDSIISARVYDKYGDYIGIRNLEAWGGLMGPGYNYYERGNLDIF 90

Query:    63 SGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP 122
             SG+ PC+ SP+C+LN++SDGSG    WY  YVEVT+ G H  C   +F V+QWL+S   P
Sbjct:    91 SGKAPCLPSPVCSLNLTSDGSGDHHGWYVNYVEVTTAGVHAKCSYQSFDVEQWLASDTSP 150

Query:   123 FESTAVIDGCGMS 135
             +E +AV + C +S
Sbjct:   151 YELSAVRNNCPVS 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2135217 PLAT1 "AT4G39730" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 67/133 (50%), Positives = 92/133 (69%)

Query:     1 DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSW-GLMGPHHDYYERGNV 59
             D  CVYT Y++TGS  K+GTDS IS  + D  G  + + +L++W GLMGP ++Y+ERGN+
Sbjct:    26 DPDCVYTFYLRTGSIWKAGTDSIISARIYDKDGDYIGIKNLQAWAGLMGPDYNYFERGNL 85

Query:    60 DVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
             D+FSGR PC+ SPIC LN++SDGSG    WY  YVE+T+ G H  C    F ++QWL++ 
Sbjct:    86 DIFSGRAPCLPSPICALNLTSDGSGDHHGWYVNYVEITTAGVHAQCSTQDFEIEQWLATD 145

Query:   120 MPPFESTAVIDGC 132
               P+E TAV + C
Sbjct:   146 TSPYELTAVRNNC 158

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:1009023406 PLAT3 "AT5G65158" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 54/103 (52%), Positives = 70/103 (67%)

Query:    24 ISIALGDAVGRSVWVPDLKSWG-LMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDG 82
             +S+ L D+ G+   + DL SWG LMGP HDY+ERGN+D+FSG G C+  P+C +N++SDG
Sbjct:     1 MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60

Query:    83 SGMFPSWYCEYVEVT-STGPHRSCDQSAFYVDQWLSSRMPPFE 124
             SG    WYC YVEVT S    RSC Q  F V+QWL+    P+E
Sbjct:    61 SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYE 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2182865 ATS3 "AT5G07190" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 34/98 (34%), Positives = 48/98 (48%)

Query:     4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLM-GPHHDYYERGNVDVF 62
             C YT+ V T       T  +ISI  GDA G  V+ P L   GL+ GP      + + + F
Sbjct:    34 CPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLG--GLVRGPGG--LGKCSTNTF 89

Query:    63 SGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTG 100
               RG C+  PIC+L ++ +G      W  E +E+ S G
Sbjct:    90 QVRGQCLNDPICSLYINRNGPD---GWVPESIEIYSEG 124

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

MGI|MGI:1914609 Loxhd1 "lipoxygenase homology domains 1" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 36/117 (30%), Positives = 55/117 (47%)

Query:     2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
             ++  YT+ VKT   + +GTD+ + I +    G S  +  LK       + + +ER N D 
Sbjct:  1678 EWTSYTVSVKTSDILGAGTDANVFIIIFGENGDSGTLA-LKQ----SANWNKFERNNTDT 1732

Query:    62 FSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQS-AFYVDQWLS 117
             F+         +C L V  D  G+FP W+  YV+V       S D++  F  D WLS
Sbjct:  1733 FNFSDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDN----SRDETFRFQCDCWLS 1785

GO:0003674 "molecular_function" evidence=ND

GO:0007605 "sensory perception of sound" evidence=ISO;IMP

GO:0032420 "stereocilium" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q8IVV2 LOXHD1 "Lipoxygenase homology domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 36/117 (30%), Positives = 55/117 (47%)

Query:     2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
             ++  YT+ VKT   + +GTD+ + I +    G S  +  LK       + + +ER N D 
Sbjct:  1605 EWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLA-LKQ----SANWNKFERNNTDT 1659

Query:    62 FSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSA-FYVDQWLS 117
             F+         +C L V  D  G+FP W+  YV+V       S D++  F  D WLS
Sbjct:  1660 FNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDN----SRDETFHFQCDCWLS 1712

GO:0032420 "stereocilium" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=IMP

TAIR|locus:4515102981 AT2G41475 "AT2G41475" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 30/93 (32%), Positives = 43/93 (46%)

Query:     4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFS 63
             C YT+ +KT     S T  KISI+ GD  G  V+V  L       P    +E+ + D + 
Sbjct:    48 CSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRLDD-----PSSRTFEKCSSDTYK 102

Query:    64 GRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEV 96
               GPC+   +C L +   GS     W  E V++
Sbjct:   103 ISGPCMRD-VCYLYLLRQGSD---GWKPENVKI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|E1BC86 LOC504986 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 0.00066, P = 0.00066
 Identities = 37/115 (32%), Positives = 53/115 (46%)

Query:     6 YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
             Y + VKTG G  SGT + + I L  A GRS     L   G        ++R ++DVF   
Sbjct:  3118 YEILVKTGWGRGSGTTAHVGIMLYGADGRSGH-RHLDGDGA-------FQRNSLDVFQIA 3169

Query:    66 GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120
              P     +  + V  D  G+ P+W+ ++V V      RS   + F V+ WLS  M
Sbjct:  3170 TPHSLGRLWKIRVWHDNKGLSPAWFLQHVIVRDLQSARS---TFFLVNDWLSVEM 3221


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      149       149   0.00078  104 3  11 22  0.50    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.44u 0.12s 14.56t   Elapsed:  00:00:00
  Total cpu time:  14.44u 0.12s 14.56t   Elapsed:  00:00:00
  Start:  Fri May 10 20:31:53 2013   End:  Fri May 10 20:31:53 2013

GO:0060674 "placenta blood vessel development" evidence=IEA

GO:0050982 "detection of mechanical stimulus" evidence=IEA

GO:0042994 "cytoplasmic sequestering of transcription factor" evidence=IEA

GO:0032092 "positive regulation of protein binding" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007259 "JAK-STAT cascade" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005261 "cation channel activity" evidence=IEA

GO:0002133 "polycystin complex" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001502 "cartilage condensation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.2154.1 hypothetical protein (130 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
cd01754	129	cd01754, PLAT_plant_stress, PLAT/LH2 domain of pla	2e-52
cd00113	116	cd00113, PLAT, PLAT (Polycystin-1, Lipoxygenase, A	4e-20
cd01756	120	cd01756, PLAT_repeat, PLAT/LH2 domain repeats of f	4e-15
pfam01477	115	pfam01477, PLAT, PLAT/LH2 domain	8e-12
cd01752	120	cd01752, PLAT_polycystin, PLAT/LH2 domain of polyc	8e-09
pfam06232	126	pfam06232, ATS3, Embryo-specific protein 3, (ATS3)	1e-06
cd01753	113	cd01753, PLAT_LOX, PLAT domain of 12/15-lipoxygena	2e-04

>gnl|CDD|238852 cd01754, PLAT_plant_stress, PLAT/LH2 domain of plant-specific single domain protein family with unknown function

 Score =  162 bits (411), Expect = 2e-52
 Identities = 69/129 (53%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 4   CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWG-LMGPHHDYYERGNVDVF 62
           CVYT+YV+TGS  K+GTDS+IS+ + DA G  + + +L++WG LMG  HDY+ERGN+D F
Sbjct: 1   CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRF 60

Query: 63  SGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP 122
           SGRGPC+ SP C +N++SDG+G  P WY  YVEVT  G H  C Q  F V+QWL++   P
Sbjct: 61  SGRGPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESP 120

Query: 123 FESTAVIDG 131
           +  TAV + 
Sbjct: 121 YMLTAVRNN 129

Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins. Length = 129

>gnl|CDD|238061 cd00113, PLAT, PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain

 Score = 79.3 bits (196), Expect = 4e-20
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 4   CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFS 63
           C YT+ +KTG    +GTDS IS+AL    G S  +P L   G        +ERG+ D F 
Sbjct: 1   CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPG-------SFERGSTDTFQ 53

Query: 64  GRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP 122
                    I  + +  DGSG+   WYCE + V + G  +      F V++W+      
Sbjct: 54  IDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYT---FPVNRWVLGGKWY 109

It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. Length = 116

>gnl|CDD|238854 cd01756, PLAT_repeat, PLAT/LH2 domain repeats of family of proteins with unknown function

 Score = 66.4 bits (163), Expect = 4e-15
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 5   VYTLYVKTGSGIKSGTDSKISIAL----GDAVGRSVWVPDLKSWGLMGPHHDYYERGNVD 60
            Y + VKTG    +GTD+ + I L    GD   R      LK       + + +ERG  D
Sbjct: 2   TYEVTVKTGDVKGAGTDANVFITLYGENGDTGKRK-----LKKSN----NKNKFERGQTD 52

Query: 61  VFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
            F+     +G  +  + +  D SG+   W+ + VE+   G     D+  F  ++WL   
Sbjct: 53  KFTVEAVDLG-KLKKIRIGHDNSGLGAGWFLDKVEIREPGTG---DEYTFPCNRWLDKD 107

In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins. Length = 120

>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain

 Score = 57.8 bits (140), Expect = 8e-12
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 6   YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
           Y + VKTG  + +GTD+ + I+L    G+S   P L+      P     +RG+ D F+  
Sbjct: 1   YQVKVKTGDELGAGTDANVYISLYGTHGKSGEYPLLE------PELKPDDRGSTDSFTFD 54

Query: 66  GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLS 117
                  +  + +  + +G    W+ + + V S           F  + W+ 
Sbjct: 55  TDEDLGDLGAIKIRWEINGHSDEWFLKSILVKSGPTGG---TYTFPCNSWVY 103

This domain is found in a variety of membrane or lipid associated proteins. It is called the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain. The known structure of pancreatic lipase shows this domain binds to procolipase pfam01114, which mediates membrane association. So it appears possible that this domain mediates membrane attachment via other protein binding partners. The structure of this domain is known for many members of the family and is composed of a beta sandwich. Length = 115

>gnl|CDD|238850 cd01752, PLAT_polycystin, PLAT/LH2 domain of polycystin-1 like proteins

 Score = 50.4 bits (121), Expect = 8e-09
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 6   YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVF--S 63
           Y + V TG    +GT +K++I L  A G S    +     L  P    +ERG+VD F  +
Sbjct: 3   YLVTVFTGWRRGAGTTAKVTITLYGAEGES----EPHH--LRDPEKPIFERGSVDSFLLT 56

Query: 64  GRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEV--TSTGPHRSCDQSAFYVDQWLS 117
              P +G  + ++ +  D SG+ PSWY   V V    TG      +  F  + WLS
Sbjct: 57  TPFP-LGE-LQSIRLWHDNSGLSPSWYLSRVIVRDLQTG-----KKWFFLCNDWLS 105

Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins. Length = 120

>gnl|CDD|218949 pfam06232, ATS3, Embryo-specific protein 3, (ATS3)

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 36/100 (36%), Positives = 44/100 (44%), Gaps = 14/100 (14%)

Query: 4   CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFS 63
           C YT+ +KT     + T  +ISIA GDA G  V+VP L      G     +ER   D F 
Sbjct: 15  CSYTVIIKTSCSSPAYTTDQISIAFGDAYGNQVYVPRLDDPSSGGG----FERCTTDTFQ 70

Query: 64  GRGPCIGSPICNL---NVSSDGSGMFPSWYCEYVEVTSTG 100
             GPC   PIC L      +DG      W  E V +   G
Sbjct: 71  VSGPCT-YPICYLYLYRSGTDG------WIPETVTIYGYG 103

Family of plant seed-specific proteins. Length = 126

>gnl|CDD|238851 cd01753, PLAT_LOX, PLAT domain of 12/15-lipoxygenase

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 5   VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSG 64
            Y + V TGS + +GTD  I + L    G S     L   G        +ERG VD +  
Sbjct: 2   EYKVTVATGSSLFAGTDDYIYLTLVGTAGESEKQL-LDRPGYD------FERGAVDEYKV 54

Query: 65  RGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLS 117
           + P     +  + +      +F +W+C Y+ V  TGP         Y  +W+ 
Sbjct: 55  KVPEDLGELLLVRLRKRKYLLFDAWFCNYITV--TGPGGDEYHFPCY--RWIE 103

As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
cd01754	129	PLAT_plant_stress PLAT/LH2 domain of plant-specifi	100.0
cd01752	120	PLAT_polycystin PLAT/LH2 domain of polycystin-1 li	100.0
cd01756	120	PLAT_repeat PLAT/LH2 domain repeats of family of p	100.0
cd01753	113	PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u	100.0
cd01757	114	PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter	99.98
cd00113	116	PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin	99.97
cd02899	109	PLAT_SR Scavenger receptor protein. A subfamily of	99.97
PF01477	113	PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg	99.96
smart00308	105	LH2 Lipoxygenase homology 2 (beta barrel) domain.	99.96
PF06232	125	ATS3: Embryo-specific protein 3, (ATS3); InterPro:	99.89
cd01755	120	PLAT_lipase PLAT/ LH2 domain present in connection	99.83
cd01758	137	PLAT_LPL PLAT/ LH2 domain present in lipoprotein l	99.7
KOG2080	1295	consensus Uncharacterized conserved protein, conta	99.44
cd01759	113	PLAT_PL PLAT/LH2 domain of pancreatic triglyceride	99.09
TIGR03230	442	lipo_lipase lipoprotein lipase. Members of this pr	98.48
cd01751	137	PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase re	89.47

>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function

Probab=100.00  E-value=9.1e-41  Score=241.81  Aligned_cols=127  Identities=54%  Similarity=1.037  Sum_probs=114.9

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEeccccc-CccCCCccccccCCccEEEeecCCCCCCcEEEEEEecC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSW-GLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDG   82 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~-~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~   82 (149)
                      |.|+|+|+||++++|||+|||+|.|+|++|++.++.++++| +|.++..+.||||++|+|.|+.++++|+|++|+||||+
T Consensus         1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn   80 (129)
T cd01754           1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG   80 (129)
T ss_pred             CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence            78999999999999999999999999999999998765444 45566788999999999999999989999999999999


Q ss_pred             CCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEEe
Q 042714           83 SGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVID  130 (149)
Q Consensus        83 ~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~~  130 (149)
                      +|..|+|||++|+|++.+++..++.|+|||+|||+.|+.|+.++++++
T Consensus        81 ~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~~~~~~~~~~  128 (129)
T cd01754          81 TGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESPYMLTAVRN  128 (129)
T ss_pred             CCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCCcceeEEEec
Confidence            999999999999999987622245899999999999999999998875

Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins

Probab=100.00  E-value=2.4e-36  Score=216.30  Aligned_cols=117  Identities=29%  Similarity=0.373  Sum_probs=107.3

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      +.|+|+|+||+..+|||+|+|+|+|+|++|++.++.      |.++..+.||||++++|.+..+.++|+|.+|+||||++
T Consensus         1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s~~~~------L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~   74 (120)
T cd01752           1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGESEPHH------LRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNS   74 (120)
T ss_pred             CEEEEEEEECCCCCCCcccEEEEEEEeCCCCcccEE------cCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCC
Confidence            579999999999999999999999999999998886      45566689999999999999987799999999999999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714           84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI  129 (149)
Q Consensus        84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~  129 (149)
                      |..++|||++|+|++.++   ++.|.|||++||+.+++|+...++.
T Consensus        75 g~~~~W~l~~V~V~~~~t---~~~~~F~~~rWl~~~~~d~~~~r~~  117 (120)
T cd01752          75 GLSPSWYLSRVIVRDLQT---GKKWFFLCNDWLSVEEGDGTVERTF  117 (120)
T ss_pred             CCCCCeEEEEEEEEECCC---CcEEEEEeCcEECCcCCCCEEEEEE
Confidence            999999999999999886   8999999999999999987654443

Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.

>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function

Probab=100.00  E-value=9.9e-35  Score=207.85  Aligned_cols=115  Identities=24%  Similarity=0.395  Sum_probs=104.6

Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCC-CccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGP-HHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~-~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      .|+|+|.||++.+|||+|+|+|+|+|++|++..+.      |+++ ..+.||||++|+|.+++ .++|+|++|+||||+.
T Consensus         2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s~~~~------L~~~~~~~~FerGs~d~F~i~~-~~lG~l~~i~i~~d~~   74 (120)
T cd01756           2 TYEVTVKTGDVKGAGTDANVFITLYGENGDTGKRK------LKKSNNKNKFERGQTDKFTVEA-VDLGKLKKIRIGHDNS   74 (120)
T ss_pred             EEEEEEEECCCcCCCCCcEEEEEEEeCCCccccEE------ccCCCcCCcccCCCeEEEEEEe-cCCCCeEEEEEEECCC
Confidence            79999999999999999999999999999998887      4444 67899999999999999 4599999999999999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714           84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI  129 (149)
Q Consensus        84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~  129 (149)
                      |..++|||++|+|+++++   ++.|.|||++||+.+++|+...++.
T Consensus        75 g~~~~W~~~~V~V~~~~~---~~~~~F~~~~Wl~~~~~dg~~~r~~  117 (120)
T cd01756          75 GLGAGWFLDKVEIREPGT---GDEYTFPCNRWLDKDEDDGQIVREL  117 (120)
T ss_pred             CCCCCcEEeEEEEEECCC---ceEEEEEeCCccCCCCCCCEEEEEE
Confidence            999999999999999886   8999999999999999986654443

In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase

Probab=100.00  E-value=2.6e-34  Score=204.00  Aligned_cols=105  Identities=29%  Similarity=0.451  Sum_probs=96.5

Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714            5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG   84 (149)
Q Consensus         5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g   84 (149)
                      .|+|+|+||+..+|||+|+|+|.|+|++|+|.++.      |+++.. +||||++|+|.++.+.++|+|++|+||||++|
T Consensus         2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S~~~~------L~~~~~-~FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g   74 (113)
T cd01753           2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGESEKQL------LDRPGY-DFERGAVDEYKVKVPEDLGELLLVRLRKRKYL   74 (113)
T ss_pred             EEEEEEEECCCcCCccccEEEEEEEECCCcccCEE------cCCCCC-ccCCCCeeEEEEecccCCCCcEEEEEEECCCC
Confidence            69999999999999999999999999999998887      444443 59999999999999888999999999999999


Q ss_pred             CCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714           85 MFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        85 ~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      ..|+|||++|+|++++    ++.|.|||++||++++
T Consensus        75 ~~~~W~l~~V~V~~~~----~~~~~F~c~rWl~~~~  106 (113)
T cd01753          75 LFDAWFCNYITVTGPG----GDEYHFPCYRWIEGYG  106 (113)
T ss_pred             CCCCeeecEEEEEcCC----CCEEEEEhHHeECCCC
Confidence            9999999999999875    6899999999998764

As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.

>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family

Probab=99.98  E-value=1.8e-31  Score=189.38  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=91.2

Q ss_pred             EEEEEEEcCCC-CCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            5 VYTLYVKTGSG-IKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         5 ~Y~V~V~Tg~~-~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      .|+|+|+||+. ++|||+|||+|.|+|++|+|.+..      |++   +.|      .|.+.. .+||+|.+|+||||++
T Consensus         2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s~~~~------L~~---~~f------~~~v~~-~~LG~L~~irIwHDns   65 (114)
T cd01757           2 PYHVVIVPSKKLGGSMFTANPWICVSGELGETPPLQ------IPK---NSL------EMTFDC-QNLGKLTTVQIGHDNS   65 (114)
T ss_pred             eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCcCCEE------ecC---Cce------EEEEec-CCcCCcEEEEEEECCC
Confidence            69999999999 599999999999999999998886      322   233      466655 5599999999999999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCC-----CceEEE
Q 042714           84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP-----FESTAV  128 (149)
Q Consensus        84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~-----~~~~~~  128 (149)
                      |..|+|||++|+|+++++   ++.|+|||+|||+.+++|     +++.++
T Consensus        66 G~~~~Wfl~~V~V~d~~t---~~~~~FpC~rWLa~~~~D~~~~~g~~~r~  112 (114)
T cd01757          66 GLLAKWLVEYVMVRNEIT---GHTYKFPCGRWLGEGVDDGNGEDGSLERV  112 (114)
T ss_pred             CCCCCeeeeEEEEEeCCC---CCEEEEecCceecCCCCcccccCCeEEEE
Confidence            999999999999999876   899999999999999998     665554

PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.

>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain

Probab=99.97  E-value=6.4e-31  Score=186.02  Aligned_cols=109  Identities=34%  Similarity=0.507  Sum_probs=98.8

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      |.|+|+|+||++.+|||+++|+|.|+|++|++.++.++      ++... ||||++++|.++.+.++|+|++|+|+||+.
T Consensus         1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~------~~~~~-f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~   73 (116)
T cd00113           1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPIL------DGPGS-FERGSTDTFQIDLKLDIGDITKVYLRRDGS   73 (116)
T ss_pred             CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEcc------CCCCc-ccCCCceEEEEeccCCCcCeEEEEEEECCC
Confidence            68999999999999999999999999999999988742      22222 999999999999997799999999999999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCC
Q 042714           84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP  122 (149)
Q Consensus        84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~  122 (149)
                      |..|+|||++|+|++.++   ++.+.|+|++||+.+..+
T Consensus        74 g~~~~W~l~~V~V~~~~~---~~~~~F~~~~Wl~~~~~~  109 (116)
T cd00113          74 GLSDGWYCESITVQALGT---KKVYTFPVNRWVLGGKWY  109 (116)
T ss_pred             CCCCCEEEeEEEEEeCCC---CCEEEEEeCCCcccCCCC
Confidence            999999999999999876   789999999999987663

It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.

>cd02899 PLAT_SR Scavenger receptor protein

Probab=99.97  E-value=7.6e-31  Score=184.91  Aligned_cols=105  Identities=28%  Similarity=0.457  Sum_probs=91.1

Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714            5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG   84 (149)
Q Consensus         5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g   84 (149)
                      .|+|+|.||+..+|||+++|+|+|+|++|++.+..+      .    +.|+||++|+|.++ +.+||+|..|+|.  +.+
T Consensus         2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S~~~~L------~----~~F~~G~~d~F~v~-~~dLG~l~~i~l~--n~g   68 (109)
T cd02899           2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRSNPKTL------S----QGFYPGSLKRIRFR-AADVGDINAIILS--NTA   68 (109)
T ss_pred             eEEEEEEECCCCCCCccceEEEEEEECCCCcCCEEc------c----CccCCCceEEEEEC-ccccCceEEEEEE--CCC
Confidence            699999999999999999999999999999998873      2    35999999999999 7779999999995  445


Q ss_pred             CCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714           85 MFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI  129 (149)
Q Consensus        85 ~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~  129 (149)
                      ..++|||++|+|+++ +   ++.|.|||+|||+.   ||...+..
T Consensus        69 ~~~~Wf~~~V~V~~~-~---g~~~~Fpc~rWla~---~~~~~v~~  106 (109)
T cd02899          69 LNDPWYCDYVRIKSE-D---GKVFAFNVKRWIGY---PYEQSVEV  106 (109)
T ss_pred             CCCCceeeEEEEECC-C---CCEEEEEcceeeCC---chhceEEE
Confidence            899999999999984 3   78999999999994   44444443

A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.

>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1

Probab=99.96  E-value=2.8e-29  Score=175.94  Aligned_cols=112  Identities=30%  Similarity=0.462  Sum_probs=98.4

Q ss_pred             EEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCCC
Q 042714            6 YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGM   85 (149)
Q Consensus         6 Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g~   85 (149)
                      |+|+|+||+..+|||+|+|+|.|+|++|++....+++      +....+  |++|+|.++.+.++|+|.+|+|+|++.+.
T Consensus         1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~~l~~------~~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~   72 (113)
T PF01477_consen    1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEIELLD------PSGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGP   72 (113)
T ss_dssp             EEEEEEEESSTEEEESSEEEEEEEETTEEEEEEEEEE------EEETST--TEEEEEEEEESSCGCSEEEEEEEEESSSS
T ss_pred             CEEEEEECCCCCCCcCCeEEEEEEECCCCcceEEEee------eeeccc--CceEEeeeeecccCCCCcEEEEEEccCCC
Confidence            9999999999999999999999999999999887532      222222  99999999997779999999999999999


Q ss_pred             CCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714           86 FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI  129 (149)
Q Consensus        86 ~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~  129 (149)
                      .++|||++|+|.+..+   ++.|.|||++||..+. ++..+++.
T Consensus        73 ~~~W~l~~V~V~~~~~---~~~~~F~~~~Wl~~~~-~~~~~rvf  112 (113)
T PF01477_consen   73 SPSWYLDSVVVTDGET---GRTYTFPCNRWLDPDK-DYKTERVF  112 (113)
T ss_dssp             SSEEEEEEEEEEETTT---SEEEEEEEEEEESTTE-GCSSEEEE
T ss_pred             ccceEEEEEEEEeCCC---CcEEEEEcCCEECCCC-CCCCccEE
Confidence            9999999999999765   8999999999999887 66666653

13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....

>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain

Probab=99.96  E-value=1.9e-28  Score=170.65  Aligned_cols=104  Identities=17%  Similarity=0.219  Sum_probs=90.8

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      +.|+|+|.||+..+|||+|+|+|.|+|++|.+.....      .......|+||++++|.++.+.++|+|.+|+|+||++
T Consensus         1 ~~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s~~~~~------~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~   74 (105)
T smart00308        1 GKYKVTVTTGGLDFAGTTASVSLSLVGAEGDGKESKL------DYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHR   74 (105)
T ss_pred             CEEEEEEEECCccCCCccceEEEEEEeCCCCCcceec------cccCCccccCCceEEEEEecccCCCCcEEEEEEeCCC
Confidence            4799999999999999999999999999976554432      1112345999999999999988899999999999997


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeec
Q 042714           84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSS  118 (149)
Q Consensus        84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~  118 (149)
                        .++|||++|+|++.++   ++.+.|||++||..
T Consensus        75 --~~~w~l~~V~V~~~~~---~~~~~F~c~~Wl~~  104 (105)
T smart00308       75 --HPEWFLKSITVKDLPT---GGKYHFPCNSWVYP  104 (105)
T ss_pred             --CCCeEEEEEEEEECCC---CCEEEEEcCceeCC
Confidence              7999999999999865   78999999999975

>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress)

Probab=99.89  E-value=3.1e-22  Score=143.23  Aligned_cols=109  Identities=38%  Similarity=0.688  Sum_probs=98.2

Q ss_pred             CceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCc-cccccCCccEEEeecCCCCCCcEEEEEEe
Q 042714            2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHH-DYYERGNVDVFSGRGPCIGSPICNLNVSS   80 (149)
Q Consensus         2 ~~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~-~~FerG~~d~F~v~~~~~lG~i~~i~l~~   80 (149)
                      +.|.|+|+|+|++...|||+++|.|.|.++.|+......     |++|.. ..|||+++|+|.+.++| +..||+|.|.+
T Consensus        12 ~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~-----Ld~p~~~~~FErCs~DtF~v~G~C-~~~IC~lyL~r   85 (125)
T PF06232_consen   12 GSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPR-----LDDPGSGDTFERCSTDTFQVTGPC-LYQICYLYLYR   85 (125)
T ss_pred             CCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEcc-----CCCCCccCchhcCCcceeEeeccc-CCcccEEEEEE
Confidence            569999999999999999999999999999999998887     677877 89999999999999999 78999999999


Q ss_pred             cCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCc
Q 042714           81 DGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFE  124 (149)
Q Consensus        81 d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~  124 (149)
                      .+.   ++|++++|+|....    .+...|.+++||..+ .+|+
T Consensus        86 ~G~---dGW~Pe~V~Iy~~~----~~~~~F~~~~~lp~~-vwyG  121 (125)
T PF06232_consen   86 SGS---DGWKPEWVQIYGSG----SKPVTFYFNTFLPNG-VWYG  121 (125)
T ss_pred             ccC---CCCEeCeEEEEEcC----CCCeEEECCCcCCCC-Cccc
Confidence            765   79999999999864    467999999999964 4444

ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].

>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain

Probab=99.83  E-value=1.3e-19  Score=129.85  Aligned_cols=95  Identities=12%  Similarity=0.079  Sum_probs=85.2

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      +.|+|+|.||...+|||+++|+|.|+|++|++..+.+      ..   ..|++|++++|.|..+.++|+|.+|++|||++
T Consensus         1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s~~~~l------~~---~~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~   71 (120)
T cd01755           1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGETEQLPI------VL---GELKPNKTYSFLIDTEVDIGDLLKVKFKWENN   71 (120)
T ss_pred             CEEEEEEEEeCccccCcCccEEEEEEcCCCCcccEEE------eC---CcccCCCEEEEEEEcCCCccceEEEEEEEcCC
Confidence            5899999999999999999999999999999999874      22   24799999999999999999999999999999


Q ss_pred             C--C-----CCCeEEEEEEEEeCCCCCCCceEEE
Q 042714           84 G--M-----FPSWYCEYVEVTSTGPHRSCDQSAF  110 (149)
Q Consensus        84 g--~-----~~~W~l~~V~V~~~~t~~~~~~~~F  110 (149)
                      +  .     .|+|++++|.|++.++   ++.+.|
T Consensus        72 ~~~~~~~~~~p~~~~~~I~Vq~get---~~~~~F  102 (120)
T cd01755          72 VINSNSGETLPKLGARKIRVKSGET---QKKFTF  102 (120)
T ss_pred             CcccccccCCCcEEEEEEEEEECCC---CCEEEE
Confidence            8  3     6899999999999886   565655

This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL)

Probab=99.70  E-value=3.2e-16  Score=114.61  Aligned_cols=96  Identities=18%  Similarity=0.143  Sum_probs=83.4

Q ss_pred             eEEEEEEEcCCCCCCC-CCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEE-Eec
Q 042714            4 CVYTLYVKTGSGIKSG-TDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNV-SSD   81 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AG-T~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l-~~d   81 (149)
                      |.|+|+|.|+....|| |+++|+|.|+|++|++..+.+      ..+  ..+++|++++|.|+++.++|+|.+|++ ||+
T Consensus         1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S~~~~l------~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~   72 (137)
T cd01758           1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGESENLPL------TLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEG   72 (137)
T ss_pred             CeEEEEEEEecccCCCcccceEEEEEEcCCCcccCEEE------ecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeC
Confidence            6899999999999999 999999999999999999874      222  456999999999999999999999999 999


Q ss_pred             CCCCCCCeE------------------EEEEEEEeCCCCCCCceEEE
Q 042714           82 GSGMFPSWY------------------CEYVEVTSTGPHRSCDQSAF  110 (149)
Q Consensus        82 ~~g~~~~W~------------------l~~V~V~~~~t~~~~~~~~F  110 (149)
                      +.+..++|+                  +++|.|+..++   .+.+.|
T Consensus        73 n~~~~~sW~~~~~~~~~~~~~~~p~l~~~~I~Vk~GEt---q~~~~F  116 (137)
T cd01758          73 SSLWSNSWWTVQTIIPWSGWWRGSGLTIRKIRVKAGET---QKKMTF  116 (137)
T ss_pred             CCCCChhhhccccccccccccCCCeEEEEEEEEEeCCC---ccEEEE
Confidence            999888885                  78899998765   455555

LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.

>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]

Probab=99.44  E-value=8e-14  Score=124.09  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=83.1

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      -.|.|.|.||  .+.|+.+||||.+.|+.+++.++.+.       ++        +-.|.+.... +|.+..++|+||++
T Consensus       974 ~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT~~i~~~-------~n--------~~~f~F~~kN-LG~LtT~rIGHdnS 1035 (1295)
T KOG2080|consen  974 MDYQVVIVTG--SGRGAIPAIWVTVEGSLCSTPPIMLK-------PN--------TPLFKFDHKN-LGILSTLRIGHQQS 1035 (1295)
T ss_pred             cceEEEEEeC--CCCcccCceEEEEecccCCCCceeeC-------CC--------CceeEEeccc-cceeeeEEecccCC
Confidence            3599999999  68899999999999999999888741       11        1235555555 99999999999999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCC
Q 042714           84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP  122 (149)
Q Consensus        84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~  122 (149)
                      |+...||+++|.|++.-|   |++|.|||.+|++..+..
T Consensus      1036 ~~~~kW~vEyV~vRNEiT---G~TYKFPCGrw~G~gedi 1071 (1295)
T KOG2080|consen 1036 EKPVQWFLEYVLVRNEIT---GQTYKFPCGRWFGNGEDI 1071 (1295)
T ss_pred             CcchHHHHHHhhhhceec---cceeccccccccCCcccc
Confidence            999999999999999876   999999999999876543

>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase

Probab=99.09  E-value=2.2e-09  Score=76.16  Aligned_cols=95  Identities=15%  Similarity=0.061  Sum_probs=77.6

Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714            5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG   84 (149)
Q Consensus         5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g   84 (149)
                      +|+|+|.-++...  ++..++|.|+|.+|++..+.+      .   ...|++|++.+|.|+.+.++|+|.+|.+.+++..
T Consensus         2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s~~~~i------~---~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~   70 (113)
T cd01759           2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNTRQYEI------F---KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNV   70 (113)
T ss_pred             eEEEEEEEecccc--cCceEEEEEEcCCCCccceEE------E---eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCc
Confidence            6999998877643  889999999999999998874      1   2359999999999999999999999999998887


Q ss_pred             CC---CCeEEEEEEEEeCCCCCCCceEEEecce
Q 042714           85 MF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQ  114 (149)
Q Consensus        85 ~~---~~W~l~~V~V~~~~t~~~~~~~~F~~~~  114 (149)
                      .+   |.-++++|.|+..++   ++.+.| |.+
T Consensus        71 ~n~~~p~~~~~~I~Vq~Ge~---~~~~~F-C~~   99 (113)
T cd01759          71 INITLPKVGAEKITVQSGKD---GKVFNF-CSS   99 (113)
T ss_pred             cCCCCCeEEEEEEEEEeCCC---ccEEEE-CCC
Confidence            65   455599999998764   454544 543

Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.

>TIGR03230 lipo_lipase lipoprotein lipase

Probab=98.48  E-value=2.4e-06  Score=73.31  Aligned_cols=96  Identities=14%  Similarity=0.060  Sum_probs=78.6

Q ss_pred             ceEEEEEEEcCCCCC-CCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEec
Q 042714            3 YCVYTLYVKTGSGIK-SGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSD   81 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~-AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d   81 (149)
                      .+.|+|+|...+... ++++..++|.|+|.+|++..+.+      .   ...++.|.+.+|.|+.+.++|+|.+|.+.++
T Consensus       308 ~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~------~---~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~  378 (442)
T TIGR03230       308 VFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEKENIPF------T---LPEVSTNKTYSFLITTDVDIGELLMVKLKWE  378 (442)
T ss_pred             EEEEEEEEEEeccccccccCCcEEEEEEcCCCCccceEE------e---eeeecCCCeEEEEEecccCCCceEEEEEEEe
Confidence            468999999987643 47899999999999999998874      1   2359999999999999999999999999998


Q ss_pred             CCCC--------CCCeEEEEEEEEeCCCCCCCceEEE
Q 042714           82 GSGM--------FPSWYCEYVEVTSTGPHRSCDQSAF  110 (149)
Q Consensus        82 ~~g~--------~~~W~l~~V~V~~~~t~~~~~~~~F  110 (149)
                      +...        .|.-++++|+|+..++   .+.+.|
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~i~v~~ge~---~~~~~f  412 (442)
T TIGR03230       379 KDTYISWSDWWSSPGFHIRKLRIKSGET---QSKVIF  412 (442)
T ss_pred             CCCcccchhhhcCCceeEEEEEEEeCCC---ccEEEE
Confidence            7753        3555699999998765   555555

Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.

>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins

Probab=89.47  E-value=2.3  Score=31.09  Aligned_cols=54  Identities=11%  Similarity=0.308  Sum_probs=39.9

Q ss_pred             EEEee--cCCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714           61 VFSGR--GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        61 ~F~v~--~~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      .|.++  .+.++|.+=.|.|...-.   .--||..|+|.+...   .....|+||.|+....
T Consensus        71 ~y~~~F~v~~~fG~pGAi~V~N~h~---~EffLksitLe~~p~---~g~v~F~CNSWVyp~~  126 (137)
T cd01751          71 AYEAEFEVPASFGPPGAVLVKNEHH---SEFFLKSITLEGFGG---SGTITFVCNSWVYPKK  126 (137)
T ss_pred             EEEEEEEeecccCCccEEEEEECCC---ceEEEEEEEEeCCCC---CccEEEEccccCccCC
Confidence            56643  446689999999975433   688999999976431   2569999999998654

Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
2fnq_A	699	Insights From The X-Ray Crystal Structure Of Coral		2e-04
3dy5_A	1066	Allene Oxide Synthase 8r-Lipoxygenase From Plexaura		3e-04

>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r- Lipoxygenase: Calcium Activation Via A C2-Like Domain And A Structural Basis Of Product Chirality Length = 699

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 3   YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVF 62
           + +Y + V+TG    +GTD+ I+I +  A GR+ ++  L  W      H+ +E G+ + +
Sbjct: 6   HAIYNVEVETGDREHAGTDATITIRITGAKGRTDYL-KLDKW-----FHNDFEAGSKEQY 59
Query: 63  SGRGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
           + +G  +G  I  + + SDG G +   P W+   V + S+   R      F   +W+   
Sbjct: 60  TVQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCF---RWVIKD 115
Query: 120 MPPFESTAVI 129
           M  F   A +
Sbjct: 116 MVLFPGEATL 125

>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 5   VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSG 64
           +Y + V+TG    +GTD+ I+I +  A GR+ ++  L  W      H+ +E G+ + ++ 
Sbjct: 375 IYNVEVETGDREHAGTDATITIRITGAKGRTDYL-KLDKW-----FHNDFEAGSKEQYTV 428
Query: 65  RGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP 121
           +G  +G  I  + + SDG G +   P W+   V + S+   R      F   +W+   M 
Sbjct: 429 QGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCF---RWVIKDMV 484
Query: 122 PFESTAVI 129
            F   A +
Sbjct: 485 LFPGEATL 492

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3vf1_A	698	11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik	6e-21
1lox_A	662	15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot	5e-15
3fg1_A	696	Allene oxide synthase-lipoxygenase protein; arichi	9e-14
3v98_A	691	Arachidonate 5-lipoxygenase; dioxygenase, oxidored	2e-12
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	3e-11
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	7e-10
3dy5_A	1066	Allene oxide synthase-lipoxygenase protein; fusion	2e-07
3cwz_B	384	RAB6IP1, RAB6-interacting protein 1; RAB small GTP	2e-06

>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698

 Score = 86.9 bits (214), Expect = 6e-21
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
            +  Y + V+TG    +GTD+ +SI L    G         ++ L    H+ +E G  D 
Sbjct: 18  HHMKYKITVETGDLRGAGTDASVSIKLTGKDGAET-----SAFSLDKYFHNDFESGGTDT 72

Query: 62  FSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSA-FYVDQWLSSRM 120
           +   G  +G  I  + +  +G G+   WY   V +              F   +W+  ++
Sbjct: 73  YDQSGVDVG-EIAMITLKENGFGLKSDWYIAKVIIEKIDEATGFSNKYIFPCYRWVIKQL 131

Query: 121 PPFESTA 127
             +E  A
Sbjct: 132 VVYEGKA 138

>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662

 Score = 69.9 bits (170), Expect = 5e-15
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 5   VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSG 64
           VY + V TG+ I +G+ +K+ + L    G                      R   + F  
Sbjct: 2   VYRVCVSTGASIYAGSKNKVELWLVGQHGEVEL-----------GSCLRPTRNKEEEFKV 50

Query: 65  RGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
                   +  + +         +W+C ++ V + G          Y  +W+   
Sbjct: 51  NVSKYLGSLLFVRLRKKHFLKEDAWFCNWISVQALGAAEDKYWFPCY--RWVVGD 103

>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696

 Score = 66.4 bits (161), Expect = 9e-14
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 16/122 (13%)

Query: 2   DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDV 61
            + +Y + V+TG    +GTD+ I+I +  A GR+           +      +E G+ + 
Sbjct: 5   HHAIYNVEVETGDREHAGTDATITIRITGAKGRT---------DYLKLDKGSFEAGSKEQ 55

Query: 62  FSGRGPCIGSPICNLNVSSDGSGMFP---SWYCEYVEVTSTGPHRSCDQSAFYVDQWLSS 118
           ++ +G  +G  I  + + SDG G +     W+   V + S+   R      F   +W+  
Sbjct: 56  YTVQGFDVG-DIQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYS---FPCFRWVIK 111

Query: 119 RM 120
            M
Sbjct: 112 DM 113

>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691

 Score = 62.6 bits (151), Expect = 2e-12
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 6   YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
           YT+ V TGS   +GTD  I ++L  + G S                  +ERG VD +   
Sbjct: 24  YTVTVATGSQEHAGTDDYIYLSLVGSAGCS---------EKHLLDKGSFERGAVDSYDVT 74

Query: 66  GP-CIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120
               +G  I  + +     G    WY +Y+ + +       D   F   +W++  +
Sbjct: 75  VDEELG-EIQLVRIEKRKYGSNDDWYLKYITLKTPH----GDYIEFPCYRWITGDV 125

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3 Length = 370

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 6   YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
             + +KT     +GTD+ I   +    G        + W L  P +D + R     ++ +
Sbjct: 258 IVVMIKTADVQDAGTDNYIYFGIETKDGVK------EEWALDNPGND-FTRNQEGTYTLK 310

Query: 66  GPCIG---SPICNLNVSSDGSGMFPS-WYCEYVEVTSTGPHRSCDQSAFYVDQWLS 117
                   S I N+ +  +   +    W   YV+V +        +    +++W+S
Sbjct: 311 LKNKNTKYSDIKNMWIRDEKLTVATDGWKPSYVKVIAGDK----VRLEKNINEWIS 362

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A Length = 370

 Score = 55.0 bits (131), Expect = 7e-10
 Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 15/116 (12%)

Query: 6   YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
              Y+ T     +GTD  +   +    G++      + W +  P +D +  G+ D ++ +
Sbjct: 258 LVAYISTSGEKDAGTDDYMYFGIKTKDGKT------QEWEMDNPGND-FMTGSKDTYTFK 310

Query: 66  GPCIG---SPICNLNVSSDGSGMFPS-WYCEYVEVTSTGPHRSCDQSAFYVDQWLS 117
                     I N+ +       FP  +  E +++ + G           +++W+S
Sbjct: 311 LKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGK----VVVDKDINEWIS 362

>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 1   DDYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVD 60
               +Y + V+TG    +GTD+ I+I +  A GR+ ++   K +      H+ +E G+ +
Sbjct: 371 GQNAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLKLDKWF------HNDFEAGSKE 424

Query: 61  VFSGRGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLS 117
            ++ +G  +G     + + SDG G +   P W+   V + S+   R      F   +W+ 
Sbjct: 425 QYTVQGFDVGDIQ-LIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYS---FPCFRWVI 480

Query: 118 SRMPPFESTA 127
             M  F   A
Sbjct: 481 KDMVLFPGEA 490

>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Length = 384

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 20/118 (16%)

Query: 1   DDYCVYTLYVKTGSGIK-SGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNV 59
                Y + +     +  S   +   I +   +G +                      NV
Sbjct: 245 TILIPYHILIVPSKKLGGSMFTANPWICISGELGET------------QILQI---PRNV 289

Query: 60  DVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLS 117
              +     +G  +  + +  D SG++  W  E V V +     +     F   +WL 
Sbjct: 290 LEMTFECQNLG-KLTTVQIGHDNSGLYAKWLVECVMVRNEVTGHTYK---FPCGRWLG 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3vf1_A	698	11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik	99.96
3v98_A	691	Arachidonate 5-lipoxygenase; dioxygenase, oxidored	99.96
3cwz_B	384	RAB6IP1, RAB6-interacting protein 1; RAB small GTP	99.95
3dy5_A	1066	Allene oxide synthase-lipoxygenase protein; fusion	99.95
3fg1_A	696	Allene oxide synthase-lipoxygenase protein; arichi	99.95
1lox_A	662	15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot	99.94
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	99.91
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	99.91
1hpl_A	449	Lipase; hydrolase(carboxylic esterase); 2.30A {Equ	99.49
1bu8_A	452	Protein (pancreatic lipase related protein 2); hyd	99.44
1rp1_A	450	Pancreatic lipase related protein 1; hydrolase, li	99.43
1gpl_A	432	RP2 lipase; serine esterase, hydrolase, lipid degr	99.38
1w52_X	452	Pancreatic lipase related protein 2; detergent, cl	99.25
2iuj_A	853	Lipoxygenase L-5; dioxygenase, metal-binding, oxid	96.96
2iuk_A	864	SEED lipoxygenase; iron, dioxygenase, metal-bindin	90.49
1f8n_A	839	Lipoxygenase-1; dioxygenase, metalloprotein, fatty	87.98

>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}

Probab=99.96  E-value=2.3e-29  Score=222.14  Aligned_cols=111  Identities=23%  Similarity=0.364  Sum_probs=101.0

Q ss_pred             CceEEEEEEEcCCCCCCCCCceeEEEEEeCCCC-eeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEe
Q 042714            2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGR-SVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSS   80 (149)
Q Consensus         2 ~~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~-s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~   80 (149)
                      ++|.|+|+|+||++.+|||||+|+|+|+|++|+ +..+.      |+++.++.||||++|+|.+++. ++|+|++|+|||
T Consensus        18 ~~~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~~S~~~~------L~~~~~~~FeRGs~D~F~v~~~-~LG~L~~IrI~h   90 (698)
T 3vf1_A           18 HHMKYKITVETGDLRGAGTDASVSIKLTGKDGAETSAFS------LDKYFHNDFESGGTDTYDQSGV-DVGEIAMITLKE   90 (698)
T ss_dssp             -CEEEEEEEEECSCCCSCSBCCEEEEEEETTSCBCCCEE------ECCBCSSSSCCCCEEEEEEEEC-CCSSEEEEEEEE
T ss_pred             CcceEEEEEEECCCCCCCCCceeEEEEEECCCCeecceE------eCCCCCCccccCCeeEEEEEec-ccCCceEEEEEE
Confidence            679999999999999999999999999999999 87776      5677779999999999999994 499999999999


Q ss_pred             cCCCCCCCeEEEEEEEEeCCC-CCCCceEEEecceeeecc
Q 042714           81 DGSGMFPSWYCEYVEVTSTGP-HRSCDQSAFYVDQWLSSR  119 (149)
Q Consensus        81 d~~g~~~~W~l~~V~V~~~~t-~~~~~~~~F~~~~Wl~~d  119 (149)
                      |++|.+++|||++|+|+++++ +..++.|.|||++||+.+
T Consensus        91 DnsG~~~~Wfl~~V~V~~~~t~~~~g~~~~Fpc~rWL~~d  130 (698)
T 3vf1_A           91 NGFGLKSDWYIAKVIIEKIDEATGFSNKYIFPCYRWVIKQ  130 (698)
T ss_dssp             CCCSSBCCCEEEEEEEEEECTTTCCEEEEEEEEEEECSSE
T ss_pred             CCCCCCCCeEEeEEEEEcCCCCCCCCcEEEEEhhhcccCC
Confidence            999999999999999999874 223688999999999986

>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B

Probab=99.96  E-value=2.5e-28  Score=215.29  Aligned_cols=107  Identities=25%  Similarity=0.336  Sum_probs=97.4

Q ss_pred             CceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEec
Q 042714            2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSD   81 (149)
Q Consensus         2 ~~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d   81 (149)
                      ..|.|+|+|+||++.+|||+|+|+|+|+|++|++..+.      |++   +.||||++|+|.++++.++|+|++|+||||
T Consensus        20 ~~~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~S~~~~------L~~---~~FeRG~~D~F~v~~~~~LG~L~~IrI~hD   90 (691)
T 3v98_A           20 HMPSYTVTVATGSQEHAGTDDYIYLSLVGSAGCSEKHL------LDK---GSFERGAVDSYDVTVDEELGEIQLVRIEKR   90 (691)
T ss_dssp             ---CEEEEEEECCSTTCCBCSEEEEEEEESSCBCCCEE------CCS---SCBCTTCEEEEEECCSSCCCSEEEEEEEEE
T ss_pred             CceeEEEEEEECCCCCCCCCceeEEEEEECCCceeeEE------ecC---CcccCCCeeEEEEEeccCCCCceEEEEEEC
Confidence            46899999999999999999999999999999998876      443   899999999999999888999999999999


Q ss_pred             CCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccC
Q 042714           82 GSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP  121 (149)
Q Consensus        82 ~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~  121 (149)
                      ++|.+++|||++|+|++++    ++.|.|||++||+.++.
T Consensus        91 nsG~~~~Wfl~~V~V~~~~----g~~~~Fpc~rWL~~d~~  126 (691)
T 3v98_A           91 KYGSNDDWYLKYITLKTPH----GDYIEFPCYRWITGDVE  126 (691)
T ss_dssp             CSSSCCCEEEEEEEEECTT----SCEEEEEEEEEECSSSC
T ss_pred             CCCCCCCeEEeEEEEECCC----CcEEEEehHHhcCCCCE
Confidence            9999999999999999985    68899999999998643

>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}

Probab=99.95  E-value=1.1e-27  Score=199.21  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=97.1

Q ss_pred             CceEEEEEEEcCCCCC-CCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEe
Q 042714            2 DYCVYTLYVKTGSGIK-SGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSS   80 (149)
Q Consensus         2 ~~~~Y~V~V~Tg~~~~-AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~   80 (149)
                      ..+.|+|+|+||++.+ |||+|||+|.|+|++|++..+.      |++         +.|.|.++..+ ||+|++|+|||
T Consensus       246 t~~~Y~V~V~TG~~~gaAGT~anV~I~L~G~~G~S~~~~------L~~---------~~d~F~v~~~~-LG~L~~I~I~H  309 (384)
T 3cwz_B          246 ILIPYHILIVPSKKLGGSMFTANPWICISGELGETQILQ------IPR---------NVLEMTFECQN-LGKLTTVQIGH  309 (384)
T ss_dssp             SEEEEEEEEEECCCCCSCCCCSCEEEEEEESSCBCCCEE------CCT---------TCCEEEEEEEC-CCSEEEEEEEE
T ss_pred             cceeEEEEEEeCCCCCCCCCCCcEEEEEEeCCCCcccEE------ecc---------cCceEEEeccc-CCCceEEEEEE
Confidence            4589999999999998 7999999999999999998886      332         15789999555 99999999999


Q ss_pred             cCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714           81 DGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI  129 (149)
Q Consensus        81 d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~  129 (149)
                      |++|.+|+|||++|+|+++++   ++.|+|||++||+.+++|+.++++.
T Consensus       310 DnsG~~p~Wfl~~V~V~d~~t---g~~~~Fpc~rWL~~d~~DG~i~R~l  355 (384)
T 3cwz_B          310 DNSGLYAKWLVECVMVRNEVT---GHTYKFPCGRWLGKGMDDGSLERVL  355 (384)
T ss_dssp             CCCSSCCCEEEEEEEEEETTT---CCEEEEEEEEEESTTSTTCCSEEEE
T ss_pred             CCCCCCCceeEeEEEEEeCCC---CcEEEEECceeCCCCCCCCeEEEEE
Confidence            999999999999999999986   8999999999999999988766555

>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}

Probab=99.95  E-value=6.4e-28  Score=220.65  Aligned_cols=108  Identities=26%  Similarity=0.445  Sum_probs=94.3

Q ss_pred             CceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEec
Q 042714            2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSD   81 (149)
Q Consensus         2 ~~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d   81 (149)
                      ..|.|+|+|+||++.+|||+|+|+|+|+|++|+|..+.      |+++.++.||||++|+|.+++ .++|+|++|+||||
T Consensus       372 ~~~~Y~V~V~TG~~~~AGTda~V~i~L~G~~G~S~~~~------L~~~~~~~FeRGs~d~F~v~~-~~LG~L~~IrI~hD  444 (1066)
T 3dy5_A          372 QNAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLK------LDKWFHNDFEAGSKEQYTVQG-FDVGDIQLIELHSD  444 (1066)
T ss_dssp             -CCEEEEEEEECCSTTCCCCSCCEEEEEESSCBCCCEE------C-------CCTTCEEEEEEEC-SCCSSEEEEEEECC
T ss_pred             CceeEEEEEEECCCCCCCCCceeEEEEEECCCceeeEE------eCCCCcCccccCCcceEEEEE-ecCCCceEEEEEEC
Confidence            35899999999999999999999999999999998876      566777999999999999999 66999999999999


Q ss_pred             CCCC---CCCeEEEEEEEEeCCCCCCCceEEEecceeeecc
Q 042714           82 GSGM---FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR  119 (149)
Q Consensus        82 ~~g~---~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d  119 (149)
                      ++|.   .++|||++|+|+++++   ++.|.|||++||+.+
T Consensus       445 nsG~~~~~~~Wfl~~V~V~~~~t---g~~~~Fpc~rWL~~d  482 (1066)
T 3dy5_A          445 GGGYWSGDPDWFVNRVIIISSTQ---DRVYSFPCFRWVIKD  482 (1066)
T ss_dssp             CCC--CCCCCEEEEEEEEEESSS---SSCEEEEEEEEESSE
T ss_pred             CCCCCCCCCCeEEeEEEEEeCCC---CCEEEEehhhhccCC
Confidence            9986   8999999999999986   899999999999986

>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A

Probab=99.95  E-value=1.3e-27  Score=210.99  Aligned_cols=104  Identities=25%  Similarity=0.412  Sum_probs=97.1

Q ss_pred             ceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecC
Q 042714            3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDG   82 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~   82 (149)
                      ...|.|+|+||++.+|||+|+|+|+|+|++|+|..+.      |++   +.||||++|+|.+++ .++|+|++|+||||+
T Consensus         6 ~~~~~~~V~TG~~~~AGTda~V~I~L~G~~G~S~~~~------L~~---~~FeRGs~d~F~v~~-~dLG~L~~IrI~hDn   75 (696)
T 3fg1_A            6 HAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLK------LDK---GSFEAGSKEQYTVQG-FDVGDIQLIELHSDG   75 (696)
T ss_dssp             EEEEEEEEEECSSTTCCBCSCEEEEEEETTEECCCEE------ECS---SCBCTTCEEEEEEEE-ECCSSEEEEEEEECC
T ss_pred             cceeeEEEEeCCCCCCCCCceeEEEEEECCCceeeEE------eCC---CCcCCCCccEEEEEE-ccCCCceEEEEEECC
Confidence            4689999999999999999999999999999998776      443   899999999999999 669999999999999


Q ss_pred             C--CC-CCCeEEEEEEEEeCCCCCCCceEEEecceeeecc
Q 042714           83 S--GM-FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR  119 (149)
Q Consensus        83 ~--g~-~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d  119 (149)
                      +  |. .++|||++|+|+++++   ++.|.|||++||+.+
T Consensus        76 sg~G~~~~~Wf~~~V~V~~~~t---g~~~~Fpc~rWL~~d  112 (696)
T 3fg1_A           76 GGYWSGDPDWFVNRVIIISSTQ---DRVYSFPCFRWVIKD  112 (696)
T ss_dssp             CCTTCSCCCEEEEEEEEEETTC---SSCEEEEEEEEESSE
T ss_pred             cCCCCCCCCeEeeEEEEEeCCC---CcEEEeEhhhhccCC
Confidence            9  88 9999999999999986   889999999999986

>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*

Probab=99.94  E-value=7.9e-26  Score=198.92  Aligned_cols=101  Identities=19%  Similarity=0.311  Sum_probs=93.4

Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714            5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG   84 (149)
Q Consensus         5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g   84 (149)
                      .|+|+|+||++.+|||+|+|+|+|+|++|++.++.      |+     .||||++|+|.++.++++|+|++|+|+||+.|
T Consensus         2 ~Y~V~V~TG~~~~AGTda~V~i~L~G~~G~s~~~~------L~-----~FerG~~d~F~v~~~~dlG~l~~I~I~~d~~g   70 (662)
T 1lox_A            2 VYRVCVSTGASIYAGSKNKVELWLVGQHGEVELGS------CL-----RPTRNKEEEFKVNVSKYLGSLLFVRLRKKHFL   70 (662)
T ss_dssp             EEEEEEEECCSTTCCCSSEEEEEEEESSCEEEEEE------EE-----CCCTTCEEEEEEECSSCCCSEEEEEEEEECSS
T ss_pred             eEEEEEEECCCcCCCcCCcEEEEEEECCCCccCee------CC-----CcCCCCccEEEEEecCCCCcceEEEEEeCCCC
Confidence            69999999999999999999999999999999887      43     89999999999999888999999999999999


Q ss_pred             CCCCeEEEEEEEEeCCCCCCCceEEEecceeeec
Q 042714           85 MFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSS  118 (149)
Q Consensus        85 ~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~  118 (149)
                      .+++|||++|+|+++++  .++.+.|||++||+.
T Consensus        71 ~~~~Wfl~~V~V~~p~~--~g~~~~F~Cn~WL~~  102 (662)
T 1lox_A           71 KEDAWFCNWISVQALGA--AEDKYWFPCYRWVVG  102 (662)
T ss_dssp             SCCCEEEEEEEEEESSS--CCCCEEEEEEEEECS
T ss_pred             CCCCcEEeEEEEecCCC--CCcEEEEEeceEecC
Confidence            99999999999999642  145699999999997

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=99.91  E-value=7.1e-24  Score=174.87  Aligned_cols=106  Identities=13%  Similarity=0.168  Sum_probs=96.6

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeec---CCCCCCcEEEEEEe
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRG---PCIGSPICNLNVSS   80 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~---~~~lG~i~~i~l~~   80 (149)
                      -.|+|+|+||+..+|||+++|+|.|+|.+|++....      |++ .+++||||++|+|.|..   +.++|+|..|+|++
T Consensus       256 ~~y~V~V~Tg~~~~AGT~~~V~~~lvg~~Ges~~~~------LD~-~gndFe~G~~d~y~v~~~~~~~~lg~l~~v~l~K  328 (370)
T 2wxu_A          256 KELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWE------MDN-PGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRK  328 (370)
T ss_dssp             CEEEEEEEECCSTTCSCCSEEEEEEEETTCCEEEEE------CCC-SSCTTCTTCEEEEEEECSCTTCCGGGEEEEEEEE
T ss_pred             eeEEEEEEcCCcccCCCcceEEEEEEcCCCccchhh------hhC-cCCCcCCCCeeeEEEecCCCccCcCceEEEEEEc
Confidence            469999999999999999999999999999998886      455 46999999999999999   77899999999999


Q ss_pred             cCC-CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714           81 DGS-GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        81 d~~-g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      +.. .+.++|||++|+|+.++    +..+.|||++||.++.
T Consensus       329 ~~~~~~~D~Wfc~~i~V~~p~----~~~~~FP~y~Wi~g~~  365 (370)
T 2wxu_A          329 RKYTAFPDAYKPENIKIIANG----KVVVDKDINEWISGNS  365 (370)
T ss_dssp             ECSSSSCCCBCEEEEEEEETT----EEEEEEECCSCBCTTC
T ss_pred             cCCCCCCccceeeeEEEEcCC----CcEEEeccceeeeCCe
Confidence            888 78999999999999986    6779999999998654

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=99.91  E-value=1.2e-23  Score=173.48  Aligned_cols=106  Identities=17%  Similarity=0.176  Sum_probs=96.7

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeec---CCCCCCcEEEEEEe
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRG---PCIGSPICNLNVSS   80 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~---~~~lG~i~~i~l~~   80 (149)
                      -.|+|+|+||+..+|||+++|+|.|+|.+|++....      |++ .+++||||++|+|.|..   +.++|+|..|+|++
T Consensus       256 n~y~V~V~Tg~~~~AGT~~~V~~~lvg~~Ges~~~~------LD~-~gndFe~G~~d~y~v~~~~~~~dlg~l~~v~l~K  328 (370)
T 1olp_A          256 NEIVVMIKTADVQDAGTDNYIYFGIETKDGVKEEWA------LDN-PGNDFTRNQEGTYTLKLKNKNTKYSDIKNMWIRD  328 (370)
T ss_dssp             SEEEEEEEECSSTTCCCCSEEEEEEEETTCCEEEEE------CCC-SSCCSCTTCEEEEEEECSCSSCCGGGEEEEEEEE
T ss_pred             ceEEEEEEcCCcccCCCcceEEEEEEcCCCccchhh------hhC-cCCccCCCCeeEEEEeccCCcCCcCceEEEEEEc
Confidence            469999999999999999999999999999998887      555 56999999999999999   78899999999999


Q ss_pred             cCC-CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714           81 DGS-GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        81 d~~-g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      ... .+.++|||++|+|+.++    +..+.|||++||.++.
T Consensus       329 ~~~~~~~D~Wfc~~i~V~~p~----~~~~~FP~y~Wi~g~~  365 (370)
T 1olp_A          329 EKLTVATDGWKPSYVKVIAGD----KVRLEKNINEWISGGT  365 (370)
T ss_dssp             ECSSSSCCEECEEEEEEEETT----EEEEEEECCSCEETTE
T ss_pred             CCCCCCCccceeeeEEEEcCC----CcEEEeccceeeeCce
Confidence            887 78999999999999986    6779999999998654

>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19

Probab=99.49  E-value=9.5e-14  Score=117.49  Aligned_cols=99  Identities=9%  Similarity=-0.031  Sum_probs=86.6

Q ss_pred             ceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEE-EEec
Q 042714            3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLN-VSSD   81 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~-l~~d   81 (149)
                      .+.|.|+|.|++   ++|+++|+|+|+|++|++..+.+      ..   ..|++|++++|.++.+.++|+|.+|+ +||+
T Consensus       338 ~~~Y~VtV~~~~---~~t~g~i~v~L~G~~g~s~~~~l------~~---~~~~~g~~~s~li~~~~dlG~l~~v~~~W~~  405 (449)
T 1hpl_A          338 RWRYRVDVTLSG---KKVTGHVLVSLFGNKGNSRQYEI------FQ---GTLKPDNTYSNEFDSDVEVGDLEKVKFIWYN  405 (449)
T ss_dssp             CEEEEEEEEEEE---CCEEEEEEEEEEETTEECCCEEE------EE---EEECSSCEEEEEEEESSCCCSEEEEEEEEEE
T ss_pred             cceeEEEEEEcC---CceeEEEEEEEEcCCCCceeEEe------cc---cccCCCcEEEEEEeCCCCCCCceEEEEEEEC
Confidence            578999999998   89999999999999999987763      22   26999999999999998899999999 7888


Q ss_pred             CCCC--CCCeEEEEEEEEeCCCCCCCceEEEecceeeec
Q 042714           82 GSGM--FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSS  118 (149)
Q Consensus        82 ~~g~--~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~  118 (149)
                      +.+.  .+.|++++|+|++ ++   ++.+.| |.+|+-.
T Consensus       406 ~~~~~~~p~~~i~~I~V~~-e~---~~~~~f-C~~~~~~  439 (449)
T 1hpl_A          406 NVINLTLPKVGASKITVER-ND---GSVFNF-CSEETVR  439 (449)
T ss_dssp             CSCCTTCCCEEEEEEEEEC-TT---SCEEEE-ECCCCBC
T ss_pred             CCCCCCCCeEEEEEEEEEe-CC---CCeeee-cCCCccc
Confidence            8763  6999999999999 76   677777 9999965

>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*

Probab=99.44  E-value=5.1e-13  Score=112.85  Aligned_cols=103  Identities=13%  Similarity=-0.024  Sum_probs=87.5

Q ss_pred             ceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEE-EEec
Q 042714            3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLN-VSSD   81 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~-l~~d   81 (149)
                      .+.|.|+|.|+.  .++|+++|.|+|+|++|++....+      ..   ..|++|++++|.++.+.++|+|.+|+ +||+
T Consensus       339 ~~~Y~v~V~~~~--~~~t~g~i~v~L~G~~g~s~~~~l------~~---~~~~~g~~~s~li~~~~dlG~l~~v~~~W~~  407 (452)
T 1bu8_A          339 RWRYKVSVTLSG--AKKLSGYILVALYGNNGNSKQYEI------FK---GSLKPEARHVRDIDVDINVGEIQKVKFLWNN  407 (452)
T ss_dssp             CEEEEEEEEEEC--SSCEEEEEEEEEEETTEECCCEEE------EE---EEECTTCEEEEEEEESSCCCSEEEEEEEEEC
T ss_pred             ceeeEEEEEEcC--CCceeeEEEEEEEcCCCCcceEEe------cc---cccCCCCEEEEEEeCCCCCCCceEEEEEEEC
Confidence            578999999976  579999999999999999987763      22   25999999999999998899999999 7898


Q ss_pred             CCCC--CCCeEEEEEEEEeCCCCCCCceEEEecceeeecc
Q 042714           82 GSGM--FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR  119 (149)
Q Consensus        82 ~~g~--~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d  119 (149)
                      +.+.  .+.|++++|+|++.++   ++.+.|=++.|+..+
T Consensus       408 ~~~~~~~p~~~i~~I~V~~~e~---~~~~~FC~~~~~~~~  444 (452)
T 1bu8_A          408 KVINLFRPTLGASQITVQSGVD---GKEYNFCSSDTVRED  444 (452)
T ss_dssp             ------CCCBEEEEEEEEETTT---CCEEEEECCCCBCTT
T ss_pred             CCCCCCCCeEEEEEEEEEeCCC---CCeEEecCCCccccC
Confidence            8763  5999999999999886   788999999999843

>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A

Probab=99.43  E-value=4.8e-13  Score=113.20  Aligned_cols=102  Identities=10%  Similarity=0.043  Sum_probs=88.3

Q ss_pred             ceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEE-EEec
Q 042714            3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLN-VSSD   81 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~-l~~d   81 (149)
                      .+.|.|+|.|++   ++|++.|+|+|+|++|++....+      ..   ..|++|++.+|.+..+.++|+|.+|+ +|++
T Consensus       338 ~~~Y~VtV~~~~---~~t~g~i~v~L~G~~g~s~~~~l------~~---~~~~~g~t~s~li~~~~dlG~l~~v~~~W~~  405 (450)
T 1rp1_A          338 RWRYGVSITLSG---KRATGQAKVALFGSKGNTHQFNI------FK---GILKPGSTHSNEFDAKLDVGTIEKVKFLWNN  405 (450)
T ss_dssp             CEEEEEEEEEEE---SCEEEEEEEEEEETTEECCCEEE------EE---EEECTTCEEEEEEEESSCCSSEEEEEEEEEE
T ss_pred             cceeEEEEEEcC---CceeEEEEEEEEcCCCCcceEEe------cc---cccCCCCEEEEEEECCCCCCCceEEEEEEEC
Confidence            578999999998   89999999999999999987763      22   26999999999999998899999999 6888


Q ss_pred             CCCC--CCCeEEEEEEEEeCCCCCCCceEEEecceeeecc
Q 042714           82 GSGM--FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR  119 (149)
Q Consensus        82 ~~g~--~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d  119 (149)
                      +.+.  .+.|++++|+|++.++   ++.+.|=++.|+..+
T Consensus       406 ~~~~~~~p~~~i~~I~V~~~e~---~~~~~FC~~~~~~~~  442 (450)
T 1rp1_A          406 NVVNPTFPKVGAAKITVQKGEE---KTVHSFCSESTVRED  442 (450)
T ss_dssp             C--CTTCCCEEEEEEEEEETTC---SSCEEEECSCEECTT
T ss_pred             CCCCCCCCeEEEEEEEEEeCCC---CCeEEecCCCccccC
Confidence            7663  6999999999999886   778999999999843

>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A

Probab=99.38  E-value=1.6e-12  Score=109.01  Aligned_cols=95  Identities=8%  Similarity=-0.048  Sum_probs=82.0

Q ss_pred             ceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEE-EEec
Q 042714            3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLN-VSSD   81 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~-l~~d   81 (149)
                      .+.|.|+|.|++   ++|++.|+|+|+|++|++..+.+      ..   ..|++|++++|.++.+.++|+|.+|+ +||+
T Consensus       321 ~~~Y~v~v~~~~---~~~~g~i~v~L~G~~g~s~~~~l------~~---~~~~~g~~~s~li~~~~~lG~l~~v~~~W~~  388 (432)
T 1gpl_A          321 RWRYKVSVTLSG---KKVTGHILVSLFGNKGNSKQYEI------FK---GTLKPDSTHSNEFDSDVDVGDLQMVKFIWYN  388 (432)
T ss_dssp             CEEEEEEEEEEE---CCEEEEEEEEEEESSCEEEEEEE------EE---EEECTTCEEEEEEEESSCCCSEEEEEEEEEE
T ss_pred             cceeEEEEEEcC---CceeEEEEEEEEcCCCCceeEEe------cc---cccCCCcEEEEEEeCCCCCCCceEEEEEEEc
Confidence            578999999998   89999999999999999988764      22   25999999999999998899999999 7898


Q ss_pred             CCCC--CCCeEEEEEEEEeCCCCCCCceEEEecce
Q 042714           82 GSGM--FPSWYCEYVEVTSTGPHRSCDQSAFYVDQ  114 (149)
Q Consensus        82 ~~g~--~~~W~l~~V~V~~~~t~~~~~~~~F~~~~  114 (149)
                      +.+.  .+.|++++|+|++.++   ++  .|.|.+
T Consensus       389 ~~~~~~~~~~~i~~I~v~~~e~---~~--~~fC~~  418 (432)
T 1gpl_A          389 NVINPTLPRVGASKIIVETNVG---KQ--FNFCSP  418 (432)
T ss_dssp             SSCCTTCCEEEEEEEEEECTTS---CE--EEEECS
T ss_pred             CCCCCCCCeEEEEEEEEEeCCC---CC--ceecCC
Confidence            7763  5999999999999875   44  677764

>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus}

Probab=99.25  E-value=4.9e-13  Score=112.97  Aligned_cols=103  Identities=11%  Similarity=0.025  Sum_probs=89.8

Q ss_pred             ceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEE-EEec
Q 042714            3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLN-VSSD   81 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~-l~~d   81 (149)
                      .+.|.|+|.|+.  .++|++.|+|+|+|++|++....+      ..   ..|++|++++|.+..+.++|+|.+|+ +||+
T Consensus       339 ~~~Y~v~v~~~~--~~~t~g~i~v~L~G~~g~s~~~~l------~~---~~~~~g~~~s~li~~~~dlG~l~~v~~~W~~  407 (452)
T 1w52_X          339 SWRYRVSITLAG--SGKANGYLKVTLRGSNGNSKQYEI------FK---GSLQPDSSYTLDVDVNFIIGKIQEVKFVWNK  407 (452)
T ss_dssp             CEEEEECCBCCS--SSCCEECBCCCBCCSSCCCCCCCC------CC---EECCSSCCCCEEEEESSCCCCCCCBCCCBCC
T ss_pred             ceeeEEEEEEcC--CcceeeEEEEEEEcCCCCcceEec------cc---cccCCCCEEEEEEECCCCCCCceEEEEEEEC
Confidence            578999999986  579999999999999999987663      22   36999999999999998899999999 7888


Q ss_pred             CCCC--CCCeEEEEEEEEeCCCCCCCceEEEecceeeecc
Q 042714           82 GSGM--FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR  119 (149)
Q Consensus        82 ~~g~--~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d  119 (149)
                      +.+.  .+.|++++|+|++.++   ++.+.|=+++|+..+
T Consensus       408 ~~~~~~~~~~~i~~I~V~~~e~---~~~~~fC~~~~~~~~  444 (452)
T 1w52_X          408 TVLNLSKPQLGASRITVQSGAD---GTEYKFCGSGTVQDN  444 (452)
T ss_dssp             SSCCSCCCCCCCSBCCCCBSSS---CCCCCEECCSCCCSS
T ss_pred             CCCCCCCCeEEEEEEEEEeCCC---CCeEEecCCCccccC
Confidence            7663  6999999999999876   778999999999844

>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max}

Probab=96.96  E-value=0.0026  Score=57.43  Aligned_cols=87  Identities=11%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             eeEEEEEeC----CCCe--eEEecccccCccCCCccccccCCccEEEe--ecCCCCCCcEEEEEEecCCCCCCCeEEEEE
Q 042714           23 KISIALGDA----VGRS--VWVPDLKSWGLMGPHHDYYERGNVDVFSG--RGPCIGSPICNLNVSSDGSGMFPSWYCEYV   94 (149)
Q Consensus        23 nV~i~l~G~----~G~s--~~~~~l~~~~l~~~~~~~FerG~~d~F~v--~~~~~lG~i~~i~l~~d~~g~~~~W~l~~V   94 (149)
                      +|.++|+.+    .|..  +....++.| +.   ......| ...|.+  ..+.++|.+-.|.|.....   +.|||++|
T Consensus        55 ~v~lqlvs~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~-~~~~~v~f~~~~~~G~~gav~v~n~~~---~e~fl~~i  126 (853)
T 2iuj_A           55 SISIQLISATKADGGKGKVGKATNLRGK-IT---LPTIGAK-EEAYDAQFDWDSDFGIPGAFYIKNYMQ---NEFYLKSL  126 (853)
T ss_dssp             SEEEEEEEEEEESSSSEEEEEEEECCCC-CC---CSSCCTT-EEEEEEEEECCSSSCCEEEEEEEECSS---SCEEEEEE
T ss_pred             eEEEEEEEeeeCCCCCcccCCccccccc-cC---CCCCCCC-ceEEEEEeeccccCCCceEEEEEecCC---ccceEeEE
Confidence            588888766    2322  223334444 21   1122333 456888  5577899999999975443   79999999


Q ss_pred             EEEeCCCCCCCceEEEecceeeeccc
Q 042714           95 EVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        95 ~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      +|.....  .+. +.||||+|+....
T Consensus       127 ~l~~~p~--~g~-~~F~c~sWv~~~~  149 (853)
T 2iuj_A          127 ILEDIPN--HGT-IHFICNSWVYNSK  149 (853)
T ss_dssp             EECCCTT--SCC-EEEEEEEEECBTT
T ss_pred             EEeecCC--CCc-EEEEecccccCCC
Confidence            9976321  033 8899999998643

>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}

Probab=90.49  E-value=2.4  Score=38.40  Aligned_cols=55  Identities=11%  Similarity=0.052  Sum_probs=40.7

Q ss_pred             cEEEee--cCCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714           60 DVFSGR--GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        60 d~F~v~--~~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      ..|.++  .+.++|.+-.|.|.....   ..+||..|+|.+...   ....+|+||.|+....
T Consensus       105 ~~~~~~f~~~~~fg~pgA~~v~n~~~---~e~~l~~~~l~~~~~---~~~~~f~cnswv~~~~  161 (864)
T 2iuk_A          105 DAFSIFFEWDASFGIPGAFYIKNFMT---DEFFLVSVKLEDIPN---HGTIEFVCNSWVYNFR  161 (864)
T ss_dssp             EEEEEEECCCSTTCCEEEEEEEECSS---SCEEEEEEEEECCSS---SCCEEEEEEEEECBGG
T ss_pred             EEEEEEEEeeccCCCcceEEEEeCCC---CceEEEEEEEecCCC---CCcEEEecCccccCCC
Confidence            356654  456799999999985443   679999999976531   2457799999998654

>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...

Probab=87.98  E-value=2.2  Score=38.60  Aligned_cols=55  Identities=5%  Similarity=0.059  Sum_probs=38.8

Q ss_pred             cEEEee--cCCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714           60 DVFSGR--GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        60 d~F~v~--~~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      ..|.++  .+.++|.+-.|.|.....   ..+||..|+|.+...   ....+|+||.|+....
T Consensus        79 ~~~~~~f~~~~~fg~pga~~v~n~~~---~e~~l~~~~l~~~~~---~~~~~f~cnswv~~~~  135 (839)
T 1f8n_A           79 SAFNIHFEWDGSMGIPGAFYIKNYMQ---VEFFLKSLTLEAISN---QGTIRFVCNSWVYNTK  135 (839)
T ss_dssp             EEEEEEEECCGGGCCEEEEEEEECSS---SCEEEEEEEECC-------CCEEEEEEEEECBGG
T ss_pred             eEEEEEEEeccccCCceeEEEEeCCC---CceEEEEEEEecCCC---CCcEEEecccccCCCC
Confidence            356543  455689999999985443   679999999965431   2456799999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d2p0ma2	111	b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Orycto	2e-18
d1ca1a2	121	b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domai	8e-12
d1olpa2	121	b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domai	8e-12
d1bu8a1	114	b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal	6e-07
d1rp1a1	113	b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal	4e-05
d1gpla1	112	b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal	4e-04

>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 111

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Lipoxigenase N-terminal domain
domain: 15-Lipoxygenase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 73.5 bits (180), Expect = 2e-18
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 5   VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSG 64
           VY + V TG+ I +G+ +K+ + L    G                      R   + F  
Sbjct: 2   VYRVCVSTGASIYAGSKNKVELWLVGQHGEVELG-----------SCLRPTRNKEEEFKV 50

Query: 65  RGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLS 117
                   +  + +         +W+C ++ V +     + D+  F   +W+ 
Sbjct: 51  NVSKYLGSLLFVRLRKKHFLKEDAWFCNWISVQA--LGAAEDKYWFPCYRWVV 101

>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]} Length = 121

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

 Score = 56.5 bits (136), Expect = 8e-12
 Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 15/122 (12%)

Query: 6   YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
              Y+ T     +GTD  +   +    G++      + W +  P +D +  G+ D ++ +
Sbjct: 9   LVAYISTSGEKDAGTDDYMYFGIKTKDGKT------QEWEMDNPGND-FMTGSKDTYTFK 61

Query: 66  GPCIG---SPICNLNVSSDG-SGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP 121
                     I N+ +     +    ++  E ++V + G           +++W+S    
Sbjct: 62  LKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKVIANGKVVVD----KDINEWISGNST 117

Query: 122 PF 123
             
Sbjct: 118 YN 119

>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]} Length = 121

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium absonum [TaxId: 29369]

 Score = 56.6 bits (136), Expect = 8e-12
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 1   DDYCV--YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGN 58
            DY +    + +KT     +GTD+ I   +    G        + W L  P  + + R  
Sbjct: 2   KDYDLNEIVVMIKTADVQDAGTDNYIYFGIETKDGVK------EEWALDNP-GNDFTRNQ 54

Query: 59  VDVFSGRGPCIG---SPICNLNVSSDGSGMFPS-WYCEYVEVTSTGPHRSCDQSAFYVDQ 114
              ++ +        S I N+ +  +   +    W   YV+V +    R        +++
Sbjct: 55  EGTYTLKLKNKNTKYSDIKNMWIRDEKLTVATDGWKPSYVKVIAGDKVRLE----KNINE 110

Query: 115 WLS 117
           W+S
Sbjct: 111 WIS 113

>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (102), Expect = 6e-07
 Identities = 9/91 (9%), Positives = 15/91 (16%), Gaps = 11/91 (12%)

Query: 6  YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
          Y + V             I +AL    G S                   +     V    
Sbjct: 4  YKVSVTLSG--AKKLSGYILVALYGNNGNS---------KQYEIFKGSLKPEARHVRDID 52

Query: 66 GPCIGSPICNLNVSSDGSGMFPSWYCEYVEV 96
                 I  +    +   +           
Sbjct: 53 VDINVGEIQKVKFLWNNKVINLFRPTLGASQ 83

>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Length = 113

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Dog (Canis familiaris) [TaxId: 9615]

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 7/90 (7%), Positives = 21/90 (23%), Gaps = 12/90 (13%)

Query: 6  YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
          Y + +            +  +AL  + G +                   + G+       
Sbjct: 4  YGVSITLSG---KRATGQAKVALFGSKGNT---------HQFNIFKGILKPGSTHSNEFD 51

Query: 66 GPCIGSPICNLNVSSDGSGMFPSWYCEYVE 95
                 I  +    + + + P++      
Sbjct: 52 AKLDVGTIEKVKFLWNNNVVNPTFPKVGAA 81

>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 112

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 7/93 (7%), Positives = 18/93 (19%), Gaps = 18/93 (19%)

Query: 6  YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHH---DYYERGNVDVF 62
          Y + V             I ++L    G S              +       +  +    
Sbjct: 4  YKVSVTLSG---KKVTGHILVSLFGNKGNS------------KQYEIFKGTLKPDSTHSN 48

Query: 63 SGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVE 95
                    +  +      + + P+       
Sbjct: 49 EFDSDVDVGDLQMVKFIWYNNVINPTLPRVGAS 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2p0ma2	111	15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T	100.0
d1olpa2	121	Alpha-toxin, C-terminal domain {Clostridium absonu	99.97
d1ca1a2	121	Alpha-toxin, C-terminal domain {Clostridium perfri	99.97
d1rp1a1	113	Pancreatic lipase, C-terminal domain {Dog (Canis f	99.93
d1bu8a1	114	Pancreatic lipase, C-terminal domain {Rat (Rattus	99.93
d1gpla1	112	Pancreatic lipase, C-terminal domain {Guinea pig (	99.88
d3bnea2	143	Plant lipoxigenase {Soybean (Glycine max), isozyme	90.98

>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Lipoxigenase N-terminal domain
domain: 15-Lipoxygenase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.9e-33  Score=192.91  Aligned_cols=102  Identities=19%  Similarity=0.285  Sum_probs=93.1

Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714            5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG   84 (149)
Q Consensus         5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g   84 (149)
                      .|+|+|+||+.++|||+|+|+|+|+|++|.+....      |     +.|+||++|.|.+..+.++|+|.+|+|+||+.|
T Consensus         2 ~Y~I~v~TG~~~~AGT~a~V~i~l~G~~G~s~~~~------l-----~~f~rg~~d~F~~~~~~~lG~i~~i~i~~d~~g   70 (111)
T d2p0ma2           2 VYRVCVSTGASIYAGSKNKVELWLVGQHGEVELGS------C-----LRPTRNKEEEFKVNVSKYLGSLLFVRLRKKHFL   70 (111)
T ss_dssp             EEEEEEEECSSSSCCCSSEEEEEEEESSCEEEEEE------E-----ECCCTTCEEEEEEECSSCCCSEEEEEEEEECSS
T ss_pred             eEEEEEEECCCCCCCCCCeEEEEEEECCCCCCCcC------c-----cccccCcEEEEEEEeeccccceEEEEEEECCCC
Confidence            69999999999999999999999999999988765      2     459999999999999877999999999999999


Q ss_pred             CCCCeEEEEEEEEeCCCCCCCceEEEecceeeecc
Q 042714           85 MFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR  119 (149)
Q Consensus        85 ~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d  119 (149)
                      ..++|||++|+|+++++  +++.|.|||++||+.|
T Consensus        71 ~~~~W~l~~V~V~~~~~--~~~~~~Fpc~~Wl~~d  103 (111)
T d2p0ma2          71 KEDAWFCNWISVQALGA--AEDKYWFPCYRWVVGD  103 (111)
T ss_dssp             SCCCEEEEEEEEEESSS--SCCCEEEEEEEEECSS
T ss_pred             CCCCeEEEEEEEEecCC--CCeEEEEEcCceECCC
Confidence            99999999999999753  2678999999999754

>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=99.97  E-value=8.2e-31  Score=185.33  Aligned_cols=109  Identities=18%  Similarity=0.221  Sum_probs=95.0

Q ss_pred             CceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCC---CCCCcEEEEE
Q 042714            2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPC---IGSPICNLNV   78 (149)
Q Consensus         2 ~~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~---~lG~i~~i~l   78 (149)
                      +...|.|+|+||+.++|||+|+|+|.|+|++|.+.++.      |+++ .+.||||++|+|.+..++   .+|+|.+|+|
T Consensus         5 ~~~~~~V~v~Tg~~~~AGT~a~V~i~l~G~~g~s~~~~------L~~~-~~~Ferg~~d~F~v~~~d~~~~lG~i~~i~i   77 (121)
T d1olpa2           5 DLNEIVVMIKTADVQDAGTDNYIYFGIETKDGVKEEWA------LDNP-GNDFTRNQEGTYTLKLKNKNTKYSDIKNMWI   77 (121)
T ss_dssp             CCSEEEEEEEECSSTTCCCCSEEEEEEEETTCCEEEEE------CCCS-SCCSCTTCEEEEEEECSCSSCCGGGEEEEEE
T ss_pred             cccEEEEEEEECCCCCCCCcceEEEEEEECCCCcccEE------ecCC-CcccccCCeEEEEEEeCCccCCcCceEEEEE
Confidence            34679999999999999999999999999999998887      4444 578999999999999875   5899999999


Q ss_pred             EecCCCC-CCCeEEEEEEEEeCCCCCCCceEEEecceeeecccC
Q 042714           79 SSDGSGM-FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP  121 (149)
Q Consensus        79 ~~d~~g~-~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~  121 (149)
                      +||+.|. .++|||++|+|... +   ++.|.|||++||+.++.
T Consensus        78 ~hd~~g~~~~~W~l~~V~v~~~-~---~~~~~F~~nrWl~~~~~  117 (121)
T d1olpa2          78 RDEKLTVATDGWKPSYVKVIAG-D---KVRLEKNINEWISGGTT  117 (121)
T ss_dssp             EEECSSSSCCEECEEEEEEEET-T---EEEEEEECCSCEETTEE
T ss_pred             EEcCCCCCCcceeEEEEEEECC-C---CeEEEEECCEEECCCcE
Confidence            9999886 45699999999654 2   68899999999997653

>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=99.97  E-value=1.9e-30  Score=183.49  Aligned_cols=108  Identities=14%  Similarity=0.148  Sum_probs=95.3

Q ss_pred             ceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCC---CCCCcEEEEEE
Q 042714            3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPC---IGSPICNLNVS   79 (149)
Q Consensus         3 ~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~---~lG~i~~i~l~   79 (149)
                      .-.|.|.|+||+.++|||+|+|+|.|+|.+|.+..+.      |+++ .+.||||++|+|.+..++   .+|+|.+|+|+
T Consensus         6 ~~~~~v~V~TG~~~~AGTda~V~i~l~G~~G~s~~~~------L~~~-~~~Ferg~~d~F~v~~~d~~~~lG~i~ki~i~   78 (121)
T d1ca1a2           6 VKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWE------MDNP-GNDFMTGSKDTYTFKLKDENLKIDDIQNMWIR   78 (121)
T ss_dssp             CCEEEEEEEECCSTTCCCCSEEEEEEEETTSCEEEEE------CCCS-SSCSCTTCEEEEEEECSCSSCCGGGEEEEEEE
T ss_pred             ceeEEEEEEeCCCCCCCCCCeEEEEEEeCCCCeeeEE------ecCC-CccccCCcEEEEEEEeCCcCCCcCCceEEEEE
Confidence            3579999999999999999999999999999998886      5554 578999999999999876   48999999999


Q ss_pred             ecCCCC-CCCeEEEEEEEEeCCCCCCCceEEEecceeeecccC
Q 042714           80 SDGSGM-FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP  121 (149)
Q Consensus        80 ~d~~g~-~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~  121 (149)
                      ||+.|. .++|||++|+|... +   ++.|.|+|++||+.++.
T Consensus        79 hd~~g~~~~~W~l~~V~v~~~-~---~~~~~F~~nrWl~~~~~  117 (121)
T d1ca1a2          79 KRKYTAFPDAYKPENIKVIAN-G---KVVVDKDINEWISGNST  117 (121)
T ss_dssp             EECSSSSCCCBCEEEEEEEET-T---EEEEEEECCSCBCSSCE
T ss_pred             EcCccccCchhheEEEEEECC-C---CeEEEeECCEEECCCCE
Confidence            999986 56799999999754 3   78899999999997754

>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.93  E-value=9.7e-27  Score=162.33  Aligned_cols=103  Identities=9%  Similarity=0.036  Sum_probs=91.0

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      +.|+|+|+||   +|||+|+|+|+|+|++|++.++.+         ..+.||||++|+|.|+.+.+||+|.+|+|+||++
T Consensus         2 ~rY~V~V~t~---gagT~a~v~i~L~G~~g~t~~~~l---------~~~~f~~g~~~~f~i~~~~~lG~l~~v~i~hdn~   69 (113)
T d1rp1a1           2 WRYGVSITLS---GKRATGQAKVALFGSKGNTHQFNI---------FKGILKPGSTHSNEFDAKLDVGTIEKVKFLWNNN   69 (113)
T ss_dssp             EEEEEEEEEE---ESCEEEEEEEEEEETTEECCCEEE---------EEEEECTTCEEEEEEEESSCCSSEEEEEEEEEEC
T ss_pred             eEEEEEEEEC---CCCccceEEEEEEcCCCCcccEEE---------cceeEcCCCEEEEEEEeCCCCCCcEEEEEEECCC
Confidence            6899999998   699999999999999999988873         2367999999999999987799999999999999


Q ss_pred             CCCCCe---EEEEEEEEeCCCCCCCceEEEecceeeecccC
Q 042714           84 GMFPSW---YCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP  121 (149)
Q Consensus        84 g~~~~W---~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~  121 (149)
                      |.+++|   |+++|+|++.++   ++.|.|.+++|+..+..
T Consensus        70 g~~~~w~~~~v~~V~V~~~~~---g~~~~Fc~~~~v~~~v~  107 (113)
T d1rp1a1          70 VVNPTFPKVGAAKITVQKGEE---KTVHSFCSESTVREDVL  107 (113)
T ss_dssp             --CTTCCCEEEEEEEEEETTC---SSC-EEECSCEECTTCC
T ss_pred             CCCCccccceeEEEEEEcCCC---CcEEEECcCceEccCce
Confidence            999999   999999999886   89999999999987643

>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3e-26  Score=159.94  Aligned_cols=104  Identities=12%  Similarity=-0.053  Sum_probs=88.0

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      +.|+|+|+||+.  +||+|+|+|.|+|++|++.++.+         ..+.|+||++|+|.++.+.++|+|.+|+|+||++
T Consensus         2 ~rY~V~V~t~~~--~gT~~~V~i~L~G~~G~s~~~~l---------~~~~f~rG~~~~f~~~~~~~lG~l~~i~i~hdn~   70 (114)
T d1bu8a1           2 WRYKVSVTLSGA--KKLSGYILVALYGNNGNSKQYEI---------FKGSLKPEARHVRDIDVDINVGEIQKVKFLWNNK   70 (114)
T ss_dssp             EEEEEEEEEECS--SCEEEEEEEEEEETTEECCCEEE---------EEEEECTTCEEEEEEEESSCCCSEEEEEEEEEC-
T ss_pred             cEEEEEEEECCC--CCcCceEEEEEEeCCCCcccCcc---------chhhccCCCceEEEEecCcCCCCcEEEEEEECCC
Confidence            689999999985  59999999999999999988863         2467999999999999987799999999999999


Q ss_pred             CCCCCe---EEEEEEEEeCCCCCCCceEEEecceeeecccC
Q 042714           84 GMFPSW---YCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP  121 (149)
Q Consensus        84 g~~~~W---~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~  121 (149)
                      |.+++|   ++++|+|.+..+   ++.|.|.+++|+..+..
T Consensus        71 g~~~~W~~~~l~~V~V~~~~~---g~~~~Fc~~~~v~~~~~  108 (114)
T d1bu8a1          71 VINLFRPTLGASQITVQSGVD---GKEYNFCSSDTVREDVL  108 (114)
T ss_dssp             -----CCCBEEEEEEEEETTT---CCEEEEECCCCBCTTCC
T ss_pred             cCCCcccccceEEEEEEeCCC---CCEEEEecCceEcCCce
Confidence            999999   599999999876   89999999999986643

>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.88  E-value=5.8e-23  Score=142.89  Aligned_cols=101  Identities=10%  Similarity=-0.045  Sum_probs=89.4

Q ss_pred             eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714            4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS   83 (149)
Q Consensus         4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~   83 (149)
                      +.|+|+|+|+   +|||+|+|+|.|+|++|++.++.+      .   ...|+||++|+|.++++.++|+|.+|+++||++
T Consensus         2 ~rY~V~V~t~---g~~T~~~V~i~L~G~~G~s~~~~L------~---~~~f~~g~t~tf~i~~~~~lG~l~~v~~~hdns   69 (112)
T d1gpla1           2 WRYKVSVTLS---GKKVTGHILVSLFGNKGNSKQYEI------F---KGTLKPDSTHSNEFDSDVDVGDLQMVKFIWYNN   69 (112)
T ss_dssp             EEEEEEEEEE---ECCEEEEEEEEEEESSCEEEEEEE------E---EEEECTTCEEEEEEEESSCCCSEEEEEEEEEES
T ss_pred             cEEEEEEEEc---CCCccceEEEEEEECCCCcccEEE------c---CccccCCCEEEEEEEeCCCCCCcEEEEEEECCC
Confidence            6899999997   689999999999999999988874      2   356999999999999998899999999999999


Q ss_pred             CCCCCeE---EEEEEEEeCCCCCCCceEEEecceeeecccC
Q 042714           84 GMFPSWY---CEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP  121 (149)
Q Consensus        84 g~~~~W~---l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~  121 (149)
                      |.+|+|+   +++|+|++.+    ++.|.| |.++.-..+.
T Consensus        70 g~~~~w~~~~~~~I~V~~g~----g~~~~F-C~~~~v~~~~  105 (112)
T d1gpla1          70 VINPTLPRVGASKIIVETNV----GKQFNF-CSPETVREEV  105 (112)
T ss_dssp             SCCTTCCEEEEEEEEEECTT----SCEEEE-ECSCCEETTC
T ss_pred             CCCCCcccccCEEEEEECCC----CeEEEe-cCcccccCCc
Confidence            9999999   8999999764    577888 9999865544

>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Lipoxigenase N-terminal domain
domain: Plant lipoxigenase
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=90.98  E-value=0.57  Score=31.81  Aligned_cols=56  Identities=5%  Similarity=0.023  Sum_probs=39.5

Q ss_pred             ccEEEeec--CCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714           59 VDVFSGRG--PCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM  120 (149)
Q Consensus        59 ~d~F~v~~--~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~  120 (149)
                      ...|.++.  +.++|.+=.|.|...-   ..--||+.|++.+...   .-..+|+||.|+....
T Consensus        72 ~~~y~v~F~vd~~fG~PGAi~V~N~h---~~EffL~sitle~~p~---~g~vhF~CNSWVyp~~  129 (143)
T d3bnea2          72 ESAFNIHFEWDGSMGIPGAFYIKNYM---QVEFFLKSLTLEAISN---QGTIRFVCNSWVYNTK  129 (143)
T ss_dssp             CEEEEEEECCCGGGCCEEEEEEEECS---SSCEEEEEEEECCC-------CEEEEEEEEECBGG
T ss_pred             cEEEEEEEEecccCCCccEEEEEecC---CccEEEEEEEEecCCC---CcCEEEeCCCcEeECC
Confidence            34566543  4558999999997543   3689999999976531   2469999999997543