Citrus Sinensis ID: 042724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MTSCCRCSPTALQFHCRFGKEQEESPCGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMCL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHEccccccccccHHcccHHHccccHccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtsccrcsptalqfhcrfgkeqeespcgfsgdacdgaedgrDLYEVLRVEPTTTILEIKMAYQSLAKVYHLdlsgngrdfieiqnsyatlsdptaRAVYDMCL
Flexible Loop (DISEMBL)
mtsccrcsptaLQFHCRFGKEQEESPCGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQnsyatlsdptaRAVYDMCL
Low Complexity Region (SEG)
MTSCCRCSPTALQFHCRFGKEQEESPCGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMCL
Disordered region (IsUnstruct)
***CCRCSPTALQFHCRFG*******CGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTA*AV*****
Disordered Region (DISOPRED)
******************************************LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMCL
Disordered Region (DISEMBL)
MTSCCRCSPTALQFHCRFG********GFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMCL
Disordered Region (DISPRO)
******C*PTALQFHCR***********************RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSCCRCSPTALQFHCRFGKEQEESPCGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q50312	309	DnaJ-like protein MG002 h	yes	no	0.592	0.197	0.5	1e-09
P47248	310	DnaJ-like protein MG002 O	yes	no	0.601	0.2	0.460	6e-09
Q05646	370	Chaperone protein DnaJ OS	yes	no	0.601	0.167	0.476	5e-08
Q9SDN0	197	Chaperone protein dnaJ 20	no	no	0.689	0.360	0.410	6e-08
B4F2V6	378	Chaperone protein DnaJ OS	yes	no	0.592	0.161	0.461	9e-08
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.582	0.156	0.468	1e-07
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.582	0.160	0.460	1e-07
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.582	0.159	0.476	1e-07
C1KVB9	376	Chaperone protein DnaJ OS	yes	no	0.582	0.159	0.476	1e-07
P0DJM1	377	Chaperone protein DnaJ OS	yes	no	0.582	0.159	0.460	2e-07

>sp|Q50312|DNAJL_MYCPN DnaJ-like protein MG002 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_002 PE=4 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-FIEIQNSYATLSDPTARAVYDM 101
           LY++L +  T T+ EIK AY+ LAK YH D++  G D F++I N+YA LSD T +A YD 
Sbjct: 3   LYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYDA 62

Query: 102 CL 103
            L
Sbjct: 63  ML 64

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|P47248|DNAJL_MYCGE DnaJ-like protein MG002 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG002 PE=4 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-RDFIEIQNSYATLSDPTARAVYD 100
           +LY++L +  T +I EIK+AY+ LAK YH D++  G + F+EI N+Y+ LSDP  +  YD
Sbjct: 2   NLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKYD 61

Query: 101 MCL 103
             L
Sbjct: 62  SML 64

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

>sp|Q05646|DNAJ_ERYRH Chaperone protein DnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 39  DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTA 95
           D RD YE+L V  + T  EIK AY+ LAK YH D++   G    F E+Q +Y  LSD   
Sbjct: 3   DKRDFYEILGVSKSATDAEIKKAYRQLAKKYHPDINKEDGAEAKFKEVQEAYEVLSDSQK 62

Query: 96  RAVYD 100
           RA YD
Sbjct: 63  RANYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Erysipelothrix rhusiopathiae (taxid: 1648)

>sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 32  DACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGR------DFIEIQN 85
           D    +ED    Y++L V  + T+ EIK AY+ LA+ YH D+S   R       FI +Q 
Sbjct: 57  DPVKQSEDL-SFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQE 115

Query: 86  SYATLSDPTARAVYDMCL 103
           +Y TLSDP  R +YD  L
Sbjct: 116 AYETLSDPRRRVLYDRDL 133

Have a continuous role in plant development probably in the structural organization of compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|B4F2V6|DNAJ_PROMH Chaperone protein DnaJ OS=Proteus mirabilis (strain HI4320) GN=dnaJ PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           RD YEVL +  T    EIK AY+ LA  YH D +   +D    F EI+ +Y  LSDP  R
Sbjct: 4   RDFYEVLGLSKTADEKEIKRAYKRLAMKYHPDRNQGDKDSESKFKEIKEAYEVLSDPQKR 63

Query: 97  AVYDM 101
           A YD 
Sbjct: 64  AAYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           +DLYE+L V+   +  EIK AY+ LAK YH DL+   ++    F EI  +Y  LSDP  R
Sbjct: 4   KDLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKR 63

Query: 97  AVYD 100
           A YD
Sbjct: 64  AQYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARA 97
           RD YE+L V  +    E+K AY+ LA+ YH D++   G    F EI  +Y  LSDP ARA
Sbjct: 3   RDFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARA 62

Query: 98  VYD 100
            YD
Sbjct: 63  NYD 65

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL---SGNGRDFIEIQNSYATLSDPTARA 97
           RD YEVL V  + +  EIK AY+ L+K YH D+   +G    F EI  +Y  LSDP  RA
Sbjct: 4   RDYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 98  VYD 100
            YD
Sbjct: 64  QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=dnaJ PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL---SGNGRDFIEIQNSYATLSDPTARA 97
           RD YEVL V  + +  EIK AY+ L+K YH D+   +G    F EI  +Y  LSDP  RA
Sbjct: 4   RDYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 98  VYD 100
            YD
Sbjct: 64  QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL---SGNGRDFIEIQNSYATLSDPTARA 97
           RD YEVL +  + +  EIK AY+ L+K YH D+   +G    F EI  +Y  LSDP  RA
Sbjct: 4   RDYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRA 63

Query: 98  VYD 100
            YD
Sbjct: 64  QYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
224061637	99	predicted protein [Populus trichocarpa]	0.592	0.616	0.617	3e-14
225462060	148	PREDICTED: chaperone protein dnaJ 11, ch	0.592	0.412	0.625	6e-14
255579560	168	chaperone protein DNAj, putative [Ricinu	0.592	0.363	0.552	1e-13
15231204	157	chaperone DnaJ-domain containing protein	0.601	0.394	0.603	1e-13
297834156	157	DNAJ heat shock N-terminal domain-contai	0.601	0.394	0.603	1e-13
357460317	161	Chaperone protein dnaJ [Medicago truncat	0.592	0.378	0.552	1e-12
224122088	171	predicted protein [Populus trichocarpa]	0.592	0.356	0.541	2e-12
118487648	171	unknown [Populus trichocarpa]	0.592	0.356	0.541	2e-12
224093380	142	predicted protein [Populus trichocarpa]	0.679	0.492	0.506	2e-12
356552398	142	PREDICTED: chaperone protein dnaJ 11, ch	0.728	0.528	0.481	3e-12

>gi|224061637|ref|XP_002300579.1| predicted protein [Populus trichocarpa] gi|222847837|gb|EEE85384.1| predicted protein [Populus trichocarpa]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 47/68 (69%), Gaps = 7/68 (10%)

Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLDL-------SGNGRDFIEIQNSYATLSDPTA 95
           LYE+LRV PT + +EIK AY+SLAKVYH D           G DFIEI N+Y TLSDP A
Sbjct: 2   LYEILRVNPTASQVEIKTAYRSLAKVYHPDAMLDRDDEPSEGVDFIEIHNAYETLSDPAA 61

Query: 96  RAVYDMCL 103
           RAVYDM L
Sbjct: 62  RAVYDMSL 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462060|ref|XP_002275924.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera] gi|296090000|emb|CBI39819.3| unnamed protein product [Vitis vinifera]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 49/64 (76%), Gaps = 3/64 (4%)

Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARAVY 99
           LYEVLRV+ T +  EIK AY+SLAK+YH D S    +GR+FI+I N+Y TLSDP ARAVY
Sbjct: 50  LYEVLRVKQTASPTEIKTAYRSLAKMYHPDASPVDSDGRNFIQIHNAYETLSDPAARAVY 109

Query: 100 DMCL 103
           D+ L
Sbjct: 110 DLSL 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579560|ref|XP_002530622.1| chaperone protein DNAj, putative [Ricinus communis] gi|223529832|gb|EEF31765.1| chaperone protein DNAj, putative [Ricinus communis]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 51/67 (76%), Gaps = 6/67 (8%)

Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLD------LSGNGRDFIEIQNSYATLSDPTAR 96
           LYE+LR++ T +++EIK AY+SLAK+YH D      +  +GRDF+EI N+Y TLSDP AR
Sbjct: 73  LYEILRIKRTASLMEIKTAYRSLAKLYHPDAAVREDVETDGRDFMEIHNAYETLSDPAAR 132

Query: 97  AVYDMCL 103
           A+YD+ L
Sbjct: 133 ALYDLSL 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231204|ref|NP_187939.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9294537|dbj|BAB02800.1| DnaJ-like protein [Arabidopsis thaliana] gi|21592683|gb|AAM64632.1| DnaJ protein, putative [Arabidopsis thaliana] gi|32815917|gb|AAP88343.1| At3g13310 [Arabidopsis thaliana] gi|332641811|gb|AEE75332.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRDFIEIQNSYATLSDPTARAVYD 100
            LYE+L+V  T ++ EIK AY+SLAKVYH D S  +GRDF+EI  +YATL+DPT RA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 101 MCL 103
             L
Sbjct: 124 STL 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834156|ref|XP_002884960.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330800|gb|EFH61219.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRDFIEIQNSYATLSDPTARAVYD 100
            LYE+L+V  T ++ EIK AY+SLAKVYH D S  +GRDF+EI  +YATL+DPT RA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 101 MCL 103
             L
Sbjct: 124 STL 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460317|ref|XP_003600440.1| Chaperone protein dnaJ [Medicago truncatula] gi|358349362|ref|XP_003638707.1| Chaperone protein dnaJ [Medicago truncatula] gi|355489488|gb|AES70691.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504642|gb|AES85845.1| Chaperone protein dnaJ [Medicago truncatula] gi|388517361|gb|AFK46742.1| unknown [Medicago truncatula]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 48/67 (71%), Gaps = 6/67 (8%)

Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG------NGRDFIEIQNSYATLSDPTAR 96
           LYEVLR+ P  + +EIK AY+SLAKVYH D +       N  DFIEI+N+Y TLSDP++R
Sbjct: 60  LYEVLRLNPGASAMEIKSAYRSLAKVYHPDAAARRLQECNDGDFIEIRNAYETLSDPSSR 119

Query: 97  AVYDMCL 103
            +YD+ L
Sbjct: 120 QIYDLSL 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122088|ref|XP_002330538.1| predicted protein [Populus trichocarpa] gi|222872096|gb|EEF09227.1| predicted protein [Populus trichocarpa]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 11/72 (15%)

Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLDL-----------SGNGRDFIEIQNSYATLS 91
           LY+VLRV P  + +EIK AY+SLAK+YH D              +G DFIEI ++Y TLS
Sbjct: 70  LYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETLS 129

Query: 92  DPTARAVYDMCL 103
           DPTARAVYD+ L
Sbjct: 130 DPTARAVYDLSL 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487648|gb|ABK95649.1| unknown [Populus trichocarpa]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 11/72 (15%)

Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLDL-----------SGNGRDFIEIQNSYATLS 91
           LY+VLRV P  + +EIK AY+SLAK+YH D              +G DFIEI ++Y TLS
Sbjct: 70  LYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETLS 129

Query: 92  DPTARAVYDMCL 103
           DPTARAVYD+ L
Sbjct: 130 DPTARAVYDLSL 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093380|ref|XP_002309904.1| predicted protein [Populus trichocarpa] gi|222852807|gb|EEE90354.1| predicted protein [Populus trichocarpa]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 7/77 (9%)

Query: 34  CDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG-------NGRDFIEIQNS 86
            D       LYE+L+V+ T ++ EIK A++SLAKVYH D+SG       +G DF+EI N+
Sbjct: 38  VDPGRKSLSLYEILQVKRTASLTEIKGAFRSLAKVYHPDVSGSDGGEQLDGLDFVEICNA 97

Query: 87  YATLSDPTARAVYDMCL 103
           Y TLSDP ARA+YD+ L
Sbjct: 98  YETLSDPAARAMYDLSL 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552398|ref|XP_003544555.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 6/81 (7%)

Query: 28  GFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-----GNGRDFIE 82
            F+  A D +     LYEVLR++   + +EIK AY++LAKVYH D +      + RDFIE
Sbjct: 27  AFTATAID-SRRAASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSALRRSESDERDFIE 85

Query: 83  IQNSYATLSDPTARAVYDMCL 103
           I ++Y TLSDP+ARA+YD+ L
Sbjct: 86  IHDAYETLSDPSARALYDLSL 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.592	0.388	0.612	3.3e-15
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.563	0.362	0.468	3.6e-09
GENEDB_PFALCIPARUM|PF11_0099	540	PF11_0099 "heat shock protein	0.601	0.114	0.492	6.9e-09
UNIPROTKB|Q8IIR6	540	PF11_0099 "Heat shock protein	0.601	0.114	0.492	6.9e-09
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.873	0.456	0.37	1.2e-08
FB|FBgn0032474	389	DnaJ-H "DnaJ homolog" [Drosoph	0.601	0.159	0.476	6.1e-08
DICTYBASE|DDB_G0282313	363	DDB_G0282313 "heat shock prote	0.592	0.168	0.403	8.9e-08
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.563	0.360	0.430	1.1e-07
ZFIN|ZDB-GENE-081021-2	199	dnajc5ab "DnaJ (Hsp40) homolog	0.592	0.306	0.446	1.1e-07
POMBASE|SPCC830.07c	379	psi1 "DNAJ domain protein, inv	0.563	0.153	0.457	5.6e-07

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    43 LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRDFIEIQNSYATLSDPTARAVYDM 101
             LYE+L+V  T ++ EIK AY+SLAKVYH D S  +GRDF+EI  +YATL+DPT RA+YD 
Sbjct:    65 LYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYDS 124

Query:   102 CL 103
              L
Sbjct:   125 TL 126

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/64 (46%), Positives = 41/64 (64%)

Query:    43 LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD------FIEIQNSYATLSDPTAR 96
             LYE+L +   +T  EIK AY+ LA++ H D++ N RD      F++I  +Y TLSDP  R
Sbjct:    69 LYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEKR 128

Query:    97 AVYD 100
             AVYD
Sbjct:   129 AVYD 132

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GENEDB_PFALCIPARUM|PF11_0099 PF11_0099 "heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum (taxid:5833)]

 Score = 142 (55.0 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query:    40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-RDFIEIQNSYATLSDPTARAV 98
             G D Y+ L V+   T  +I  AY+ LAK YH D++ +  +DFIEI N+Y TLSDP  R +
Sbjct:    33 GMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRKM 92

Query:    99 YDM 101
             YDM
Sbjct:    93 YDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8IIR6 PF11_0099 "Heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 142 (55.0 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query:    40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-RDFIEIQNSYATLSDPTARAV 98
             G D Y+ L V+   T  +I  AY+ LAK YH D++ +  +DFIEI N+Y TLSDP  R +
Sbjct:    33 GMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRKM 92

Query:    99 YDM 101
             YDM
Sbjct:    93 YDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/100 (37%), Positives = 52/100 (52%)

Query:     9 PTALQF--HCRFGKEQEESPCGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLA 66
             PT + +    RF   + +S      D    +ED    Y++L V  + T+ EIK AY+ LA
Sbjct:    33 PTTISYPTRTRFSSTRIQSRLTHD-DPVKQSED-LSFYDLLGVTESVTLPEIKQAYKQLA 90

Query:    67 KVYHLDLSGNGR-----D-FIEIQNSYATLSDPTARAVYD 100
             + YH D+S   R     D FI +Q +Y TLSDP  R +YD
Sbjct:    91 RKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYD 130

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

FB|FBgn0032474 DnaJ-H "DnaJ homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 30/63 (47%), Positives = 38/63 (60%)

Query:    39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-FIEIQNSYATLSDPTARA 97
             D  +LY+VLRV P  T  EIK  Y+ LAK +H D + +  D F EI  +Y  LSDP  R 
Sbjct:     2 DNLNLYDVLRVAPDATDEEIKKNYRKLAKEFHPDKNPDAGDKFKEISFAYEVLSDPEKRR 61

Query:    98 VYD 100
             +YD
Sbjct:    62 IYD 64

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

DICTYBASE|DDB_G0282313 DDB_G0282313 "heat shock protein DnaJ family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 8.9e-08, P = 8.9e-08
 Identities = 25/62 (40%), Positives = 41/62 (66%)

Query:    40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-FIEIQNSYATLSDPTARAV 98
             GRD Y++L +   ++  +IK +Y+ L+  YH D + + +D +IEI ++Y TLSDP  R +
Sbjct:    23 GRDFYDILGITRDSSPADIKRSYRKLSVKYHPDKNPDKKDMYIEINSAYETLSDPEKRRI 82

Query:    99 YD 100
             YD
Sbjct:    83 YD 84

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 28/65 (43%), Positives = 40/65 (61%)

Query:    43 LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGR-------DFIEIQNSYATLSDPTA 95
             LY+VL V    T  +IK AY+ LA++ H D++G  R       +F++I  +Y TLSDP  
Sbjct:    66 LYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEK 125

Query:    96 RAVYD 100
             R+VYD
Sbjct:   126 RSVYD 130

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

ZFIN|ZDB-GENE-081021-2 dnajc5ab "DnaJ (Hsp40) homolog, subfamily C, member 5ab" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:    40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTA 95
             G  LY VL VE  T   +IK +Y+ LA  +H D + N  +    F EI N++A LSDPT 
Sbjct:    14 GESLYVVLGVEKNTAQEDIKKSYRKLALKFHPDKNPNNPEAADKFKEINNAHAILSDPTK 73

Query:    96 RAVYD 100
             R +YD
Sbjct:    74 RNIYD 78

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPCC830.07c psi1 "DNAJ domain protein, involved in translation initiation Psi1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 27/59 (45%), Positives = 35/59 (59%)

Query:    43 LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-RDFIEIQNSYATLSDPTARAVYD 100
             LY+ L V P  +  E+K AY+ LA  YH D + NG + F EI  +Y  LSDP  R +YD
Sbjct:     7 LYDCLEVRPEASEAELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQRRKLYD 65

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006413 "translational initiation" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0034605 "cellular response to heat" evidence=IEP

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.6196.1	hypothetical protein (99 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0261001401	hypothetical protein (124 aa)			•						0.503
	eugene3.02610008	hypothetical protein (132 aa)			•						0.503
	eugene3.00190466	hypothetical protein (110 aa)			•						0.503
	gw1.XIII.1526.1	annotation not avaliable (81 aa)			•						0.502
	eugene3.00190401	hypothetical protein (334 aa)			•						0.502
	estExt_fgenesh4_pm.C_1330037	hypothetical protein (160 aa)			•						0.502
	estExt_Genewise1_v1.C_LG_XIII0656	hypothetical protein (163 aa)			•						0.502
	eugene3.00860035	hypothetical protein (705 aa)			•						0.500
	eugene3.00130164	hypothetical protein (660 aa)			•						0.500
	estExt_fgenesh4_pg.C_1500058	hypothetical protein (706 aa)			•						0.500

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-15
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-14
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-12
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-11
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-11
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-11
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	3e-11
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	9e-11
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-10
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-10
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-10
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	5e-10
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	6e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-09
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-09
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-09
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-09
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-09
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	5e-09
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	6e-09
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-08
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-08
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	4e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-08
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	6e-08
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	7e-08
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-07
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-07
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-07
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	8e-06
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-05
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	3e-05
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-04
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	2e-04
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	0.001
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG----RDFIEIQNSYATLSDPTARA 97
           D YE+L V    +  EIK AY+ LA  YH D +         F EI  +Y  LSDP  RA
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 98  VYD 100
           +YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 65.7 bits (161), Expect = 4e-14
 Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS----GNGRDFIEIQNSYATLSDPTAR 96
           RD YE+L V    +  EIK AY+ LAK YH D +         F EI  +Y  LSDP  R
Sbjct: 4   RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63

Query: 97  AVYDM 101
           A YD 
Sbjct: 64  AAYDQ 68

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 55.3 bits (134), Expect = 7e-12
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-----RDFIEIQNSYATLSDPT 94
           D YE+L V    ++ EIK AY+ LA  YH D +          F EI  +Y  LSDP 
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 39  DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNG---RDFIEIQNSYATLSDPT 94
             +D YE+L V+   T  EIK AY+ LAK YH DL+ G+    + F EI  +Y  LSDP 
Sbjct: 3   AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQ 62

Query: 95  ARAVYD 100
            RA YD
Sbjct: 63  KRAQYD 68

Length = 386

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---RDFIEIQNSYATLSDPTARA 97
           +D YE+L V    T  EIK AY+ LA+ YH D + N      F EI  +Y  LSDP  R 
Sbjct: 3   KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62

Query: 98  VYDM 101
           +YD 
Sbjct: 63  LYDQ 66

Length = 382

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARA 97
           RD YEVL V  + +  EIK AY+ L+K YH D++   G    F EI  +Y  LSD   RA
Sbjct: 4   RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63

Query: 98  VYD 100
            YD
Sbjct: 64  QYD 66

Length = 376

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARAV 98
           D YE+L V    +  EIK AY+ LAK YH D +        F EI  +Y  LSDP  RA 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 99  YDM 101
           YD 
Sbjct: 61  YDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARA 97
            + Y+ L V    +  EIK AY+ L+K YH D++   G    + E+Q +Y TLSDP  RA
Sbjct: 4   TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63

Query: 98  VYD 100
            YD
Sbjct: 64  AYD 66

Length = 380

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 28/62 (45%), Positives = 34/62 (54%)

Query: 39  DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAV 98
           D   LYEVL +    T  EIK AY+ LA  +H D  G+   F EI  +Y  LSDP  R +
Sbjct: 26  DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKI 85

Query: 99  YD 100
           YD
Sbjct: 86  YD 87

Length = 421

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 39  DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTA 95
           + RD YEVL V+      EIK AY+ LA+ YH D+S   G    F EI  +YA LSD   
Sbjct: 3   EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEK 62

Query: 96  RAVYD 100
           R  YD
Sbjct: 63  RQRYD 67

Length = 378

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 50.6 bits (122), Expect = 3e-10
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG----RDFIEIQNSYATLSD 92
          D Y++L V P  +  EIK AY+ LA  YH D + +       F EI  +Y  LSD
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 53.7 bits (128), Expect = 5e-10
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-----FIEIQNSYATLSDPTA 95
            D YE+L V P  ++ EIK AY+ LA  YH D +          F EI  +Y  LSDP  
Sbjct: 6   LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65

Query: 96  RAVYD 100
           RA YD
Sbjct: 66  RAEYD 70

Length = 237

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 54.0 bits (130), Expect = 6e-10
 Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-----FIEIQNSYATLSDPTA 95
           +D YE+L V    T  EIK AY+ L K +H D     R      F EIQ +Y  LSDP  
Sbjct: 4   KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQK 63

Query: 96  RAVYD 100
           RA+YD
Sbjct: 64  RAMYD 68

Length = 369

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---RDFIEIQNSYATLSDPTARA 97
           +D Y ++ V+PT  +  IK AY+ LA+ YH D+S        F E+  ++  LSD   RA
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63

Query: 98  VYD 100
            YD
Sbjct: 64  EYD 66

Length = 306

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG--NGRD-FIEIQNSYATLSDPTARA 97
           RD YEVL V+   ++ E+K AY+ LA+ YH D++   +  D F E++ +Y TLSDP  +A
Sbjct: 4   RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63

Query: 98  VYD 100
            YD
Sbjct: 64  HYD 66

Length = 371

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL---SGNGRDFIEIQNSYATLSDPTARA 97
           +D YEVL V  T +  EI+ AY+ LAK YH DL          +EI  +   L D   R 
Sbjct: 4   KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63

Query: 98  VYD 100
            YD
Sbjct: 64  QYD 66

Length = 372

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARA 97
           +D Y +L V    +  EIK A++ LA+ YH D++   G    F EI  +Y  LSDP  R 
Sbjct: 4   KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR 63

Query: 98  VYD 100
           +YD
Sbjct: 64  IYD 66

Length = 291

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 31/66 (46%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD------FIEIQNSYATLSDPT 94
           RD YEVL V    +  EIK AY+ LA  YH D   N  D      F EI+ +Y  LSDP 
Sbjct: 4   RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKEAEEKFKEIKEAYEVLSDPQ 61

Query: 95  ARAVYD 100
            RA YD
Sbjct: 62  KRAAYD 67

Length = 371

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           RD YEVL V  T T+ EIK AY+  A  YH D +   ++    F E   +Y  LSDP  R
Sbjct: 5   RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKR 64

Query: 97  AVYD 100
           + YD
Sbjct: 65  SRYD 68

Length = 386

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           RD YEVL ++      EIK A++ LAK YH D      D    F EI  +   LS+P  R
Sbjct: 2   RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPD-RNKAPDAASIFAEINEANDVLSNPKKR 60

Query: 97  AVYD 100
           A YD
Sbjct: 61  ANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARA 97
           RD YE+L +    ++ +IK AY+ LA  YH D +        F EI  +YA LSD   RA
Sbjct: 5   RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64

Query: 98  VYD 100
            YD
Sbjct: 65  QYD 67

Length = 377

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARA 97
            D YE+L V       E+K AY+ LA+ YH D++   G    F EI  +Y  LSDP  RA
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 98  VYD 100
            YD
Sbjct: 63  RYD 65

Length = 374

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARA 97
           RD Y +L V    +  EIK AY+ LA+  H D++ +      F EI  +Y  LSDP  R 
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 98  VYDM 101
           + D+
Sbjct: 63  IVDL 66

Length = 378

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARAV 98
           D YE+L V  T +  EIK AY+ LA  YH D +   G    F +I  +YA LSD   RA 
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 99  YD 100
           YD
Sbjct: 63  YD 64

Length = 371

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           +D YEVL +E   +  EIK A++ LA  YH D +   ++    F EI  +Y  LSDP  +
Sbjct: 4   KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63

Query: 97  AVYD 100
           A YD
Sbjct: 64  AQYD 67

Length = 380

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRD----FIEIQNSYATLSDPTA 95
           +D Y++L V+   +  +IK A++ LAK +H DL  GN  +    F EI  +Y  LSDP  
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 96  RAVYD 100
           R  YD
Sbjct: 63  RRQYD 67

Length = 365

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL-SGNG---RDFIEIQNSYATLSDPTARA 97
           D Y +L V  T +  EIK AY+ LA  YH D   G+    + F E+  +Y  LSD   R 
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 98  VYD 100
            YD
Sbjct: 62  SYD 64

Length = 391

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 48.3 bits (115), Expect = 7e-08
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGR---DFIEIQNSYATLSDPTAR 96
           +D Y+VL V    T  EIK AY+ LA+ YH D + G+ +    F EI  +Y  LSD   R
Sbjct: 9   KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKR 68

Query: 97  AVYD 100
             YD
Sbjct: 69  KEYD 72

Length = 389

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           RD YEVL V  +    EIK AY+ LA  YH D + + ++    F E+  +Y  LS+   R
Sbjct: 3   RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62

Query: 97  AVYD 100
             YD
Sbjct: 63  RRYD 66

Length = 397

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---RDFIEIQNSYATLSDPTARA 97
           +D Y++L V  T +  ++K AY  LAK YH D +      + F EI  +Y  L D   RA
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62

Query: 98  VYD 100
            YD
Sbjct: 63  AYD 65

Length = 372

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           RD YE+L V    +  EIK +Y+ LA  YH D +   ++    F E   +Y  LSDP  R
Sbjct: 4   RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKR 63

Query: 97  AVYD 100
            +YD
Sbjct: 64  GIYD 67

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           RD YEVL V    +  EIK AY+ LA  YH D + +  +    F E   +Y  L D   R
Sbjct: 4   RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63

Query: 97  AVYD 100
           A YD
Sbjct: 64  ARYD 67

Length = 373

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           RD YE+L +    +  EIK AY+ +A  YH D +   ++    F E   +Y  L D   R
Sbjct: 3   RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKR 62

Query: 97  AVYD 100
           A YD
Sbjct: 63  AQYD 66

Length = 365

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           R  Y++L V  +    EIK AY+ LA  YH D +   ++    F E   +Y  L DP  R
Sbjct: 4   RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63

Query: 97  AVYD 100
             YD
Sbjct: 64  QAYD 67

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 44  YEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTARAVY 99
           YE+L VE  +    IK +Y+ LA  YH D +   ++    F  I  +Y  LSD   RA+Y
Sbjct: 6   YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALY 65

Query: 100 D 100
           D
Sbjct: 66  D 66

Length = 369

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GN---GRDFIEIQNSYATLSDPTAR 96
           +D Y+ L V    +  EIK AY+ LA+  H D + G+      F  +  ++  LSDP  R
Sbjct: 9   KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 97  AVYD 100
             YD
Sbjct: 69  KEYD 72

Length = 392

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 35  DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---------RDFIEIQN 85
                G D YE+L ++  T+  +IK  Y+ L+  +H D +              +  I  
Sbjct: 92  IEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITK 151

Query: 86  SYATLSDPTARAVY 99
           +Y  L+D   R  Y
Sbjct: 152 AYGLLTDKKRRENY 165

Length = 610

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 42  DLYEVL-----RVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD------FIEIQNSYATL 90
           DLY +L     R +      +I  A++     YH D +  G +      F  IQ +   L
Sbjct: 44  DLYALLGLSKYRTKAIPP--QILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVL 101

Query: 91  SDPTARAVYDMC 102
            D   R  YD  
Sbjct: 102 GDRKLRLQYDSN 113

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.93
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.91
PRK14288	369	chaperone protein DnaJ; Provisional	99.87
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.87
PRK14296	372	chaperone protein DnaJ; Provisional	99.87
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.86
PRK14279	392	chaperone protein DnaJ; Provisional	99.85
PRK14286	372	chaperone protein DnaJ; Provisional	99.85
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.84
PRK14282	369	chaperone protein DnaJ; Provisional	99.84
PRK14287	371	chaperone protein DnaJ; Provisional	99.84
PRK14299	291	chaperone protein DnaJ; Provisional	99.84
PRK14276	380	chaperone protein DnaJ; Provisional	99.83
PRK14283	378	chaperone protein DnaJ; Provisional	99.83
PRK14298	377	chaperone protein DnaJ; Provisional	99.83
PRK14285	365	chaperone protein DnaJ; Provisional	99.83
PRK14295	389	chaperone protein DnaJ; Provisional	99.83
PRK14278	378	chaperone protein DnaJ; Provisional	99.83
PRK14291	382	chaperone protein DnaJ; Provisional	99.82
PRK14277	386	chaperone protein DnaJ; Provisional	99.82
PRK14280	376	chaperone protein DnaJ; Provisional	99.82
PRK14294	366	chaperone protein DnaJ; Provisional	99.82
PRK14297	380	chaperone protein DnaJ; Provisional	99.82
PRK14284	391	chaperone protein DnaJ; Provisional	99.82
PRK14301	373	chaperone protein DnaJ; Provisional	99.82
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK10767	371	chaperone protein DnaJ; Provisional	99.81
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK14281	397	chaperone protein DnaJ; Provisional	99.81
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.8
PRK14300	372	chaperone protein DnaJ; Provisional	99.8
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.79
PRK14290	365	chaperone protein DnaJ; Provisional	99.79
PRK14292	371	chaperone protein DnaJ; Provisional	99.79
PRK14289	386	chaperone protein DnaJ; Provisional	99.79
PRK14293	374	chaperone protein DnaJ; Provisional	99.78
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.78
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.78
PHA03102	153	Small T antigen; Reviewed	99.75
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.75
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.75
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.74
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.74
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.72
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.69
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.68
PRK05014	171	hscB co-chaperone HscB; Provisional	99.68
PRK01356	166	hscB co-chaperone HscB; Provisional	99.67
PRK03578	176	hscB co-chaperone HscB; Provisional	99.63
PRK00294	173	hscB co-chaperone HscB; Provisional	99.63
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.63
PTZ00100	116	DnaJ chaperone protein; Provisional	99.62
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.57
PHA02624	647	large T antigen; Provisional	99.55
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.48
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.46
PRK01773	173	hscB co-chaperone HscB; Provisional	99.46
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.44
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.43
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.37
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.27
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.21
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.09
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.8
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.66
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.64
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.31
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.52
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.43
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.43
KOG0431	453	consensus Auxilin-like protein and related protein	96.87
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	95.55
PF13446	62	RPT: A repeated domain in UCH-protein	94.53
KOG0724	335	consensus Zuotin and related molecular chaperones	93.04
KOG3442	132	consensus Uncharacterized conserved protein [Funct	90.31
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	90.3
COG5552	88	Uncharacterized conserved protein [Function unknow	89.62
PF10041	78	DUF2277: Uncharacterized conserved protein (DUF227	80.78

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.6e-26  Score=172.04  Aligned_cols=64  Identities=45%  Similarity=0.671  Sum_probs=60.6

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-c---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG-N---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..+|||+||||+++|+.+|||+|||+|+++||||+++ +   +++|++|++||+||+||++|++||+.
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~f   69 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQF   69 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhcc
Confidence            4679999999999999999999999999999999997 3   77999999999999999999999974

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.4e-24  Score=160.68  Aligned_cols=65  Identities=43%  Similarity=0.640  Sum_probs=61.1

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ...+|||+||||+++|+..|||+|||+|+++||||++++    .+.|+.|+.||+||+||++|+.||+.
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~   81 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY   81 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            456899999999999999999999999999999999976    67899999999999999999999974

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=1.6e-22  Score=153.13  Aligned_cols=62  Identities=37%  Similarity=0.546  Sum_probs=58.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.    +++|++|++||+||+||.+|+.||+
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~   67 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDR   67 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4699999999999999999999999999999999862    5799999999999999999999997

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.87  E-value=1.7e-22  Score=155.15  Aligned_cols=63  Identities=44%  Similarity=0.656  Sum_probs=60.6

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ...|||+||||+++|+.+|||+|||+|+++||||++++.++|++|++||++|+||.+|+.||+
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~   88 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE   88 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence            357999999999999999999999999999999999888999999999999999999999996

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.1e-22  Score=152.64  Aligned_cols=63  Identities=40%  Similarity=0.571  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .+|||+||||+++|+.+|||+|||+|+++||||++++   +++|++|++||++|+||++|+.||+.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~   68 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQF   68 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence            4699999999999999999999999999999999854   67999999999999999999999973

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=5.4e-22  Score=147.91  Aligned_cols=64  Identities=42%  Similarity=0.706  Sum_probs=60.3

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .+..||+||||+++|+.+|||+|||+|+++||||++++ .++|++|.+||++|+||++|..||+.
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~   66 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQY   66 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            35689999999999999999999999999999999987 68999999999999999999999973

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1e-21  Score=149.78  Aligned_cols=63  Identities=33%  Similarity=0.501  Sum_probs=59.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .+|||+||||+++|+.+|||+|||+|+++||||++++    +++|++|++||++|+||++|+.||+.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~   74 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET   74 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence            4799999999999999999999999999999999863    57999999999999999999999973

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.9e-21  Score=147.38  Aligned_cols=62  Identities=37%  Similarity=0.576  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++    +++|++|++||+||+||.+|+.||+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~   68 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQ   68 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4699999999999999999999999999999999853    5799999999999999999999996

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.84  E-value=3.1e-21  Score=112.68  Aligned_cols=59  Identities=41%  Similarity=0.669  Sum_probs=55.6

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-H----HHHHHHHHHHHHcCChhhHHhhh
Q 042724           42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-G----RDFIEIQNSYATLSDPTARAVYD  100 (103)
Q Consensus        42 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~----~~~~~i~~Ay~~L~d~~~R~~Yd  100 (103)
                      |||+||||+++++.++|+++|+++++++|||+.+. .    +.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999999644 3    68999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.3e-21  Score=145.28  Aligned_cols=62  Identities=45%  Similarity=0.670  Sum_probs=58.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.     +++|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~   69 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR   69 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence            4699999999999999999999999999999999853     5699999999999999999999996

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5e-21  Score=145.04  Aligned_cols=62  Identities=44%  Similarity=0.728  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~   67 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ   67 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence            4699999999999999999999999999999999854   5789999999999999999999996

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=6.6e-21  Score=140.37  Aligned_cols=62  Identities=39%  Similarity=0.655  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~   67 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDT   67 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            4699999999999999999999999999999999864   6799999999999999999999996

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=6.1e-21  Score=144.93  Aligned_cols=62  Identities=40%  Similarity=0.660  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~   67 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQ   67 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence            4699999999999999999999999999999999864   6799999999999999999999996

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=7e-21  Score=144.50  Aligned_cols=62  Identities=47%  Similarity=0.677  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~   68 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ   68 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence            5799999999999999999999999999999999853   6799999999999999999999996

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=7.4e-21  Score=144.39  Aligned_cols=63  Identities=41%  Similarity=0.632  Sum_probs=59.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .+|||+||||+++|+.+|||+|||+|+++||||++++   +++|++|++||++|+||.+|+.||+.
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~   69 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRF   69 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhc
Confidence            4699999999999999999999999999999999854   67999999999999999999999963

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1e-20  Score=143.11  Aligned_cols=63  Identities=37%  Similarity=0.496  Sum_probs=58.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++    +++|++|++||++|+||.+|..||+.
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~   68 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRF   68 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhc
Confidence            3699999999999999999999999999999999863    56899999999999999999999973

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.1e-20  Score=143.94  Aligned_cols=62  Identities=42%  Similarity=0.600  Sum_probs=58.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++    +++|++|++||++|+||.+|+.||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            4699999999999999999999999999999999853    5799999999999999999999997

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.1e-20  Score=143.41  Aligned_cols=61  Identities=39%  Similarity=0.614  Sum_probs=58.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .|||+||||+++|+.+|||+|||+|+++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~   66 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDL   66 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence            699999999999999999999999999999999875   5689999999999999999999996

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.4e-20  Score=143.00  Aligned_cols=63  Identities=44%  Similarity=0.705  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|||+||||+++|+.++||+|||+|+++||||++++   +++|++|++||++|+||.+|+.||+.
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~   67 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQF   67 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence            3699999999999999999999999999999999864   67999999999999999999999963

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.5e-20  Score=143.02  Aligned_cols=62  Identities=48%  Similarity=0.724  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+++++||||++++    +++|++|++||++|+||.+|+.||+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~   69 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ   69 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4699999999999999999999999999999999863    5689999999999999999999996

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.5e-20  Score=142.66  Aligned_cols=62  Identities=45%  Similarity=0.670  Sum_probs=58.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~   67 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQ   67 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence            3699999999999999999999999999999999853   6899999999999999999999997

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.6e-20  Score=142.05  Aligned_cols=62  Identities=40%  Similarity=0.606  Sum_probs=58.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++    ++.|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~   68 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQ   68 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            4799999999999999999999999999999999863    5789999999999999999999996

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.5e-20  Score=142.77  Aligned_cols=63  Identities=41%  Similarity=0.605  Sum_probs=58.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.    +++|++|++||++|+||.+|+.||+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~   69 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQF   69 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence            3699999999999999999999999999999999863    57899999999999999999999963

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.3e-20  Score=142.21  Aligned_cols=62  Identities=39%  Similarity=0.565  Sum_probs=58.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .|||+||||+++|+.+|||+|||+++++||||++++    +++|++|++||++|+||.+|+.||+.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~   66 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRY   66 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence            489999999999999999999999999999999864    67899999999999999999999963

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.2e-20  Score=141.60  Aligned_cols=63  Identities=41%  Similarity=0.560  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|||+||||+++|+.++||+|||+++++||||++++    +++|++|++||++|+||.+|+.||+.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~   69 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRF   69 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence            4699999999999999999999999999999999863    56999999999999999999999963

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.3e-20  Score=142.83  Aligned_cols=65  Identities=43%  Similarity=0.534  Sum_probs=61.0

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           37 AEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        37 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ....+.||+||||..+++..+||++||+|+++||||++++     .++|+.|+.||+|||||..|++||.
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~   73 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDS   73 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHH
Confidence            3567899999999999999999999999999999999876     6799999999999999999999995

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.3e-20  Score=139.84  Aligned_cols=62  Identities=47%  Similarity=0.665  Sum_probs=58.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++    ++.|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~   68 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQ   68 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence            4699999999999999999999999999999999863    5789999999999999999999996

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.7e-20  Score=135.85  Aligned_cols=65  Identities=40%  Similarity=0.618  Sum_probs=60.0

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMCL  103 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~l  103 (103)
                      ...|||+||||+++|+..|||+||++|+++||||.+.+   .+.|++|.+||++|+|+++|.+||..+
T Consensus        41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~  108 (288)
T KOG0715|consen   41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYG  108 (288)
T ss_pred             CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            33399999999999999999999999999999999855   779999999999999999999999753

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.2e-20  Score=141.05  Aligned_cols=62  Identities=40%  Similarity=0.578  Sum_probs=58.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .|||+||||+++|+.+|||+|||+|+++||||++++    ++.|++|++||++|+||.+|+.||+.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~   68 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQF   68 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            699999999999999999999999999999999864    57899999999999999999999963

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=3.9e-20  Score=133.81  Aligned_cols=63  Identities=51%  Similarity=0.699  Sum_probs=59.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|+|+||||+++|+.++|||+||+|+++||||++++    .++|++||+||+||+||.+|..||+.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~   96 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY   96 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence            6789999999999999999999999999999999876    67999999999999999999999975

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.80  E-value=1.2e-19  Score=134.55  Aligned_cols=62  Identities=39%  Similarity=0.639  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++++.+|||+|||+++++||||++++   +++|++|++||++|+||.+|+.||.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~   67 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ   67 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3699999999999999999999999999999999853   6799999999999999999999996

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.1e-19  Score=137.85  Aligned_cols=61  Identities=39%  Similarity=0.636  Sum_probs=58.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .|||+||||+++|+.+|||+|||+++++||||++++   +++|++|++||++|+|+.+|+.||+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   66 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDR   66 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence            699999999999999999999999999999999853   6799999999999999999999997

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.79  E-value=1.4e-19  Score=136.14  Aligned_cols=60  Identities=47%  Similarity=0.695  Sum_probs=57.1

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        42 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      |||+||||+++|+.++||+||++++++||||++++   ++.|++|++||++|+||.+|..||+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~   63 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQ   63 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence            79999999999999999999999999999999853   6799999999999999999999996

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.5e-19  Score=136.65  Aligned_cols=61  Identities=39%  Similarity=0.662  Sum_probs=57.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .|||+||||+++|+.+|||+|||+|+++||||++++     +++|++|++||++|+||.+|+.||+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~   68 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ   68 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence            699999999999999999999999999999999853     4789999999999999999999996

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.6e-19  Score=136.69  Aligned_cols=61  Identities=44%  Similarity=0.618  Sum_probs=58.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .|||+||||+++|+.++||+||++++++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~   65 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDR   65 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence            589999999999999999999999999999999864   6799999999999999999999996

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.1e-19  Score=136.72  Aligned_cols=62  Identities=45%  Similarity=0.624  Sum_probs=58.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+||++|||+++++||||+++.    +++|++|++||++|+||.+|+.||+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~   69 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQ   69 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4699999999999999999999999999999999863    5789999999999999999999996

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.6e-19  Score=135.73  Aligned_cols=62  Identities=42%  Similarity=0.653  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   +++|++|++||++|+||.+|+.||.
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~   66 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQ   66 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence            3699999999999999999999999999999999854   6899999999999999999999996

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.8e-19  Score=131.82  Aligned_cols=63  Identities=37%  Similarity=0.549  Sum_probs=60.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|||+||||+.+++..+|++||+..+++||||++++    .+.|+.|.+||++|+|+.+|..||+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~   70 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKL   70 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            6799999999999999999999999999999999976    67899999999999999999999975

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.78  E-value=6e-19  Score=101.49  Aligned_cols=55  Identities=42%  Similarity=0.624  Sum_probs=51.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhh
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG-----NGRDFIEIQNSYATLSDPTA   95 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-----~~~~~~~i~~Ay~~L~d~~~   95 (103)
                      .|||+||||+++++.++|+++|+++++.+|||+++     .++.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            48999999999999999999999999999999987     36799999999999999853

>PHA03102 Small T antigen; Reviewed

Probab=99.75  E-value=1.4e-18  Score=117.72  Aligned_cols=62  Identities=15%  Similarity=0.265  Sum_probs=59.3

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ...+|+||||+++|  +.++||+|||++++++|||++++++.|++|++||++|+|+.+|..||.
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~   67 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLD   67 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccc
Confidence            45689999999999  999999999999999999999999999999999999999999999986

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.9e-18  Score=123.10  Aligned_cols=66  Identities=42%  Similarity=0.564  Sum_probs=60.4

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           37 AEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN------GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        37 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .....|+|+||||.++|+.++|++||+++++++|||+++.      .+.|+.|+.||.||+|.++|+.||++
T Consensus        10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDet   81 (264)
T KOG0719|consen   10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDET   81 (264)
T ss_pred             cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence            3456699999999999999999999999999999999843      56899999999999999999999974

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.75  E-value=3.4e-18  Score=96.66  Aligned_cols=51  Identities=43%  Similarity=0.658  Sum_probs=48.2

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCC
Q 042724           42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSD   92 (103)
Q Consensus        42 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d   92 (103)
                      |||+||||+++++.++|+++|+++++++|||+.++    .+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999874    6799999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.74  E-value=3.8e-18  Score=139.89  Aligned_cols=64  Identities=23%  Similarity=0.338  Sum_probs=59.9

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ....+||+||||+++|+..+||+|||+|+++||||++++   ..+|+.|++||++|+||.+|+.||+
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~  636 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNK  636 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence            456899999999999999999999999999999999864   5689999999999999999999996

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.2e-18  Score=132.36  Aligned_cols=64  Identities=39%  Similarity=0.622  Sum_probs=59.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .++.|||.+|+|+++|+.+||++|||++++.||||++-+       ++.|+.|.+||++|+||.+|..||.
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~   76 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN   76 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            456699999999999999999999999999999999843       6789999999999999999999995

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=7.9e-18  Score=118.68  Aligned_cols=64  Identities=33%  Similarity=0.535  Sum_probs=59.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS----GNGRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~----~~~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ...-|+|+||||+++++..|||+|||+|+++||||+.    ++++.|..|.+||+.|+|+..|..|..
T Consensus        96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ek  163 (230)
T KOG0721|consen   96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEK  163 (230)
T ss_pred             hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            5667999999999999999999999999999999995    458899999999999999999999875

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=4.1e-17  Score=112.33  Aligned_cols=63  Identities=46%  Similarity=0.675  Sum_probs=59.2

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ...+||+||||.++++.+||+++|++++++||||+++.     .+.|..|++||++|+|+..|..||+
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~   71 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDK   71 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence            46799999999999999999999999999999999864     3789999999999999999999996

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.68  E-value=8.3e-17  Score=129.68  Aligned_cols=62  Identities=42%  Similarity=0.596  Sum_probs=58.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .|||+||||+++|+.++||++||+|+++||||++++   ..+|+.|++||++|+||.+|+.||..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~f   66 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKY   66 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhh
Confidence            589999999999999999999999999999999864   55899999999999999999999963

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.68  E-value=1.1e-16  Score=110.19  Aligned_cols=61  Identities=25%  Similarity=0.394  Sum_probs=54.5

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           41 RDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        41 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .|||+||||++.  ++..+|+++|+++++++|||+..+         .+.+..||+||++|+||.+|..|+-
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            389999999996  678999999999999999999743         3478999999999999999999974

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.67  E-value=1.8e-16  Score=108.80  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=54.5

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           41 RDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        41 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .|||++|||++.  ++..+|+++|+++++++|||++.+       ...+..|++||++|+||.+|..|.-
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            589999999987  689999999999999999999854       1247899999999999999999964

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.63  E-value=7.5e-16  Score=106.57  Aligned_cols=62  Identities=21%  Similarity=0.282  Sum_probs=54.7

Q ss_pred             ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..|||+||||++.  ++..+|+++|+++++++|||++..         .+.+..||+||++|+||.+|..|.-
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            4799999999986  578999999999999999999753         2346899999999999999999974

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.63  E-value=7.8e-16  Score=106.24  Aligned_cols=63  Identities=21%  Similarity=0.359  Sum_probs=56.2

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           39 DGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        39 ~~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ...|||++|||++.  .+..+|+++|+++++++|||++.+         .+.+..||+||++|+||.+|..|+-
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            46799999999998  567999999999999999999743         3468999999999999999999974

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.63  E-value=3e-16  Score=118.10  Aligned_cols=64  Identities=34%  Similarity=0.549  Sum_probs=60.1

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ...+|||+||||.++|+..||.||||+++.+||||.+.+       +.+|..|..|-++|+||++|+.||.
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn  461 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN  461 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence            567899999999999999999999999999999999866       4589999999999999999999996

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.62  E-value=7e-16  Score=100.08  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=50.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLS   91 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~   91 (103)
                      ....++|+||||+++++.+||+++||++++++|||+.++.+.|++|++||++|.
T Consensus        62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            345799999999999999999999999999999999988999999999999985

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.3e-15  Score=115.48  Aligned_cols=66  Identities=23%  Similarity=0.322  Sum_probs=61.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMCL  103 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~l  103 (103)
                      .+.+|+|.+|||+++++.++||+.||+++...||||+..   ++.|+.|+.||++|+|+++|..||..|
T Consensus       232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            458899999999999999999999999999999999843   889999999999999999999999653

>PHA02624 large T antigen; Provisional

Probab=99.55  E-value=5.7e-15  Score=117.38  Aligned_cols=62  Identities=21%  Similarity=0.378  Sum_probs=59.0

Q ss_pred             CCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724           38 EDGRDLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY   99 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y   99 (103)
                      .+..++|++|||+++|  +.++||+|||+++++||||++++++.|++|++||++|+|+.+|..|
T Consensus         8 ee~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          8 EESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            3466899999999999  9999999999999999999999999999999999999999999988

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.9e-14  Score=104.20  Aligned_cols=64  Identities=31%  Similarity=0.497  Sum_probs=58.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ...|.|+||||++.++..||.+|||+|++++|||++.+   .+.|..|..||++|.|.+.|..||=.
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence            34689999999999999999999999999999999865   56899999999999999999999843

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.46  E-value=6.7e-14  Score=102.31  Aligned_cols=55  Identities=31%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHcCC
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYATLSD   92 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~d   92 (103)
                      ....++|+||||+++++.++||++||+++++||||+..+           +++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            456799999999999999999999999999999999521           4689999999999975

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.46  E-value=2.1e-13  Score=94.15  Aligned_cols=60  Identities=20%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhh
Q 042724           41 RDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYD  100 (103)
Q Consensus        41 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd  100 (103)
                      .|||++|||++.  .+..+++++|+++.+++|||+...         .+....||+||.+|+||.+|+.|-
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL   72 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI   72 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence            589999999987  789999999999999999999743         336799999999999999999994

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=8.1e-14  Score=106.42  Aligned_cols=64  Identities=34%  Similarity=0.530  Sum_probs=59.2

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      .+.+|||.||||...++..||+++||++++.+|||++..     +..|+++-+||.||+||.+|..||.
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds  438 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS  438 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence            457899999999999999999999999999999999843     5589999999999999999999985

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.1e-13  Score=99.27  Aligned_cols=63  Identities=38%  Similarity=0.658  Sum_probs=57.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|+|.||||.+.|+.++|++||+++++++|||+++.     +.+|++|.+||++|+|+.+|..||+.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~   69 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQY   69 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence            4689999999999999999999999999999999754     24699999999999999999999964

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.37  E-value=5e-13  Score=103.05  Aligned_cols=64  Identities=28%  Similarity=0.444  Sum_probs=58.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ...-|+|+||||+.+++..+||++||+|+.++||||.+.         ++.+.+|++||+.|+|...|+.|-.
T Consensus        95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~  167 (610)
T COG5407          95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLN  167 (610)
T ss_pred             HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            345599999999999999999999999999999999755         6789999999999999999999854

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.27  E-value=1.2e-11  Score=84.22  Aligned_cols=50  Identities=28%  Similarity=0.458  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           53 TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        53 a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .+..+|+++|+++++++|||+..+         ...+..||+||++|+||.+|+.|.-.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            467899999999999999998632         35799999999999999999999743

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.9e-11  Score=85.89  Aligned_cols=60  Identities=25%  Similarity=0.396  Sum_probs=54.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHh
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAV   98 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~   98 (103)
                      =+.|+|+||.|.|..+.++|++.||++++..|||++++     ...|..|.+||..|-|+..|..
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            46799999999999999999999999999999999987     4689999999999999986654

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.2e-10  Score=85.29  Aligned_cols=65  Identities=28%  Similarity=0.273  Sum_probs=57.3

Q ss_pred             CCccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCC---c---cHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEP---TTTILEIKMAYQSLAKVYHLDLS---G---NGRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~---~a~~~eIk~ayr~l~~~~hPD~~---~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|+|.+|||+.   .+.+.+|.++.++.+.+||||+.   |   ..+.|..|+.||++|+|+..|.+||..
T Consensus        40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~  113 (379)
T COG5269          40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN  113 (379)
T ss_pred             hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence            34579999999984   57888999999999999999996   2   278999999999999999999999953

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.3e-08  Score=64.97  Aligned_cols=56  Identities=21%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDP   93 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~   93 (103)
                      +..++--.||||++.++.+.||.++|++++..|||+.++...-..||+|+++|...
T Consensus        53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence            45556778999999999999999999999999999999999999999999999754

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.8e-08  Score=71.69  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=48.1

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHH-HcCC
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYA-TLSD   92 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~-~L~d   92 (103)
                      .-..+|.||||..+++.++++.+|..|++++|||.+..   .+.|.+|.+||. +|+.
T Consensus        45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999854   679999999999 6653

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=4.4e-08  Score=82.38  Aligned_cols=54  Identities=28%  Similarity=0.318  Sum_probs=47.3

Q ss_pred             CCccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcC
Q 042724           38 EDGRDLYEVLRVEPT----TTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLS   91 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~----a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~   91 (103)
                      ....+.|+||.|+-+    ...++||++|++++.+|||||++. .++|..+++||+.|+
T Consensus      1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            455678999999843    456899999999999999999986 789999999999998

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=7.6e-07  Score=60.45  Aligned_cols=63  Identities=27%  Similarity=0.422  Sum_probs=52.4

Q ss_pred             CCccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhh
Q 042724           38 EDGRDLYEVLRVEP--TTTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYD  100 (103)
Q Consensus        38 ~~~~d~y~iLgv~~--~a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd  100 (103)
                      ....+||.++|...  ..++..+...|....+++|||+.+.         .+....|++||.+|.||.+|+.|=
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34568999998764  4567777779999999999999532         567999999999999999999994

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=5.6e-05  Score=52.11  Aligned_cols=50  Identities=32%  Similarity=0.388  Sum_probs=43.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHc
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYATL   90 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L   90 (103)
                      .+.|.+||+.......+|+++|+++....|||+-..           .+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999998522           56788888888754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=9.7e-05  Score=50.92  Aligned_cols=59  Identities=29%  Similarity=0.465  Sum_probs=47.7

Q ss_pred             CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhh
Q 042724           42 DLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYD  100 (103)
Q Consensus        42 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd  100 (103)
                      +++..+|..+.+  ..+.++..|+.+.+.+|||+.+.         -..+..++.||.+|.||..|..|-
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~   71 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYL   71 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            455566666554  45568999999999999999754         247899999999999999999984

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.43  E-value=0.00036  Score=46.08  Aligned_cols=57  Identities=16%  Similarity=0.084  Sum_probs=43.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPT   94 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~   94 (103)
                      +....-..||||++..+.++|.+.|..|-...+|+++|+...-..|..|.+.|..+.
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            444577899999999999999999999999999999999888888888888876443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.87  E-value=0.0014  Score=51.48  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHH
Q 042724           49 VEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYAT   89 (103)
Q Consensus        49 v~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~   89 (103)
                      +.-=.+.++||++||+.++..||||...           ++.|-.+.+||..
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            3344689999999999999999999733           3455566666554

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=95.55  E-value=0.039  Score=38.87  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 042724           50 EPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLS   91 (103)
Q Consensus        50 ~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~   91 (103)
                      +++|++|||..|+..+..+|    .+|++.-..|..||+.+.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence            47899999999999999998    556788899999999865

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=94.53  E-value=0.091  Score=30.00  Aligned_cols=44  Identities=18%  Similarity=0.196  Sum_probs=33.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLS   91 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~   91 (103)
                      .+.|++|||+++.+.+.|-.+|+.... -.|      .....+.+|..++.
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia   48 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA   48 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence            457999999999999999999999887 222      34455566666554

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.12  Score=38.63  Aligned_cols=48  Identities=25%  Similarity=0.391  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHHHHHcCChhhHHhhh
Q 042724           53 TTILEIKMAYQSLAKVYHLDLSG--------NGRDFIEIQNSYATLSDPTARAVYD  100 (103)
Q Consensus        53 a~~~eIk~ayr~l~~~~hPD~~~--------~~~~~~~i~~Ay~~L~d~~~R~~Yd  100 (103)
                      ++..+|..+|++.++..||++..        .++.++.|.+||++|.+.+.|..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~   59 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPD   59 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence            56788999999999999999873        2667999999999999866655554

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.31  E-value=0.57  Score=30.93  Aligned_cols=51  Identities=18%  Similarity=0.128  Sum_probs=38.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATL   90 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L   90 (103)
                      -..--+||+|+...+.++|.+.|..|-....+.++|+...-..|-.|-+-|
T Consensus        58 lqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl  108 (132)
T KOG3442|consen   58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL  108 (132)
T ss_pred             HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence            345679999999999999999999999999999988843333344444433

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=90.30  E-value=0.8  Score=29.54  Aligned_cols=43  Identities=14%  Similarity=0.186  Sum_probs=33.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHcCCh
Q 042724           51 PTTTILEIKMAYQSLAKVYHLDLSGN--------GRDFIEIQNSYATLSDP   93 (103)
Q Consensus        51 ~~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~i~~Ay~~L~d~   93 (103)
                      +..+..+++.+.|..-++.|||..++        ++-++.|+.-.+.|..+
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            34567789999999999999998754        45677777776766654

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=89.62  E-value=2.2  Score=25.78  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=29.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN   76 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~   76 (103)
                      ++|.-+++|++|.++..||+.+-++.+++..=-..++
T Consensus         2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS   38 (88)
T COG5552           2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS   38 (88)
T ss_pred             ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence            4566788999999999999999999998885544443

>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function

Probab=80.78  E-value=10  Score=22.95  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=29.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN   76 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~   76 (103)
                      ++|.-.+.|+.|.++.+||+.|-.+.+++..=-..++
T Consensus         2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps   38 (78)
T PF10041_consen    2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS   38 (78)
T ss_pred             CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence            4456677899999999999999999999886554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		6e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-06
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		3e-06
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-06
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		7e-06
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		9e-06
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-05
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-05
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		7e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-04
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-04
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		4e-04
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		6e-04
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		8e-04

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 44  YEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLSDPTARAVYD 100
           Y+VL V+P  T  E+K AY+ LA  YH D + N G  F +I  +Y  LSD   R +YD
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           +D YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI+ +Y  L+D   R
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 97  AVYDM 101
           A YD 
Sbjct: 63  AAYDQ 67

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           +D YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI+ +Y  L+D   R
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 97  AVYDM 101
           A YD 
Sbjct: 63  AAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           +D YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI+ +Y  L+D   R
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 97  AVYDM 101
           A YD 
Sbjct: 63  AAYDQ 67

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS----GNGRDFIEIQNSYATLSDPTAR 96
           +D Y ++ V+PT  +  IK AY+ LA+ YH D+S       R F E+  ++  LSD   R
Sbjct: 5   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRR 63
Query: 97  AVYDMCL 103
           A YD   
Sbjct: 64  AEYDQMW 70

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 40  GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTA 95
           G  LY VL ++   T  +IK +Y+ LA  YH D + +  +    F EI N++A L+D T 
Sbjct: 16  GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75
Query: 96  RAVYD 100
           R +YD
Sbjct: 76  RNIYD 80

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 43  LYEVLRVEPTTTILEIKMAYQSLAKVYHLDL-SGNGRDFIEIQNSYATLSDPTARAVYDM 101
           LY++L V P+    E+K  Y+  A  YH D  +G+   F EI  ++  L+DP  R +YD 
Sbjct: 10  LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---RDFIEIQNSYATLSDPTARA 97
           +D Y +L V+PT  +  IK AY+ LA+ YH D+S        F ++  ++  L D   RA
Sbjct: 28  KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 98  VYD 100
            YD
Sbjct: 88  EYD 90

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 44  YEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-FIEIQNSYATLSDPTARAVYD 100
           Y+VL V+P  +  E+K AY+ +A  +H D + +G + F +I  +Y  LSD   R +YD
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 40  GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTAR 96
           G+D Y+ L +    +  EIK AY+  A  YH D +   G    F EI  +Y  LSDP  R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 97  AVYD 100
            ++D
Sbjct: 62  EIFD 65

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARAV 98
           D Y VL V  T +  +IK AY+ LA+ +H D +   G    FI+I  +Y  LS+   R  
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 99  YD 100
           YD
Sbjct: 78  YD 79

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARA 97
           D Y++L V    +  EIK AY  LAK YH D + +       F ++  +Y  LSD   R 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 98  VYD 100
            YD
Sbjct: 68  QYD 70

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-----FIEIQNSYATLSDPTAR 96
           + YEVL V+ + +  +IK AY+ LA  +H D + + ++     F  +  +Y  LSD   R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 97  AVYDMC 102
           ++YD  
Sbjct: 70  SLYDRA 75

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARAV 98
           D YE+L V    +  ++K AY+ LA  +H D +   G    F  I  +YA LS+P  R  
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 99  YDM 101
           YD 
Sbjct: 68  YDQ 70

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 42  DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-----RDFIEIQNSYATLSDPTAR 96
           D YEVL V    +   IK AY+ LA  +H D +        R F ++  +Y  LSD   R
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 97  AVYD 100
            +YD
Sbjct: 70  DIYD 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	6e-16
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-15
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-15
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-15
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-14
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-14
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	1e-14
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-14
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	6e-14
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	7e-14
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	7e-14
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-13
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-13
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-13
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-13
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-13
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	5e-13
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	6e-13
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	8e-13
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	9e-13
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-12
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-12
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	3e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-09
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	3e-09
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	4e-09
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	9e-09
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-06
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-05
2guz_A	71	Mitochondrial import inner membrane translocase su	4e-05

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 65.8 bits (161), Expect = 6e-16
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRDFIEIQNSYATLSDPTARAVY 99
             LY++L V P+    E+K  Y+  A  YH D   G+   F EI  ++  L+DP  R +Y
Sbjct: 8   TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67

Query: 100 D 100
           D
Sbjct: 68  D 68

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 65.9 bits (161), Expect = 1e-15
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 40  GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTA 95
           G  LY VL ++   T  +IK +Y+ LA  YH D + +  +    F EI N++A L+D T 
Sbjct: 16  GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75

Query: 96  RAVYD 100
           R +YD
Sbjct: 76  RNIYD 80

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 66.0 bits (161), Expect = 1e-15
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 38  EDGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTA 95
           E+   L ++L +E +    I  ++ AY    K +H D  G+     ++   Y  + D   
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVK 64

Query: 96  RAVYD 100
            A   
Sbjct: 65  YAHQP 69

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 64.2 bits (157), Expect = 2e-15
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-FIEIQNSYATLSDPTARAVY 99
              Y+VL V+P  +  E+K AY+ +A  +H D + +G + F +I  +Y  LSD   R +Y
Sbjct: 8   TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67

Query: 100 D 100
           D
Sbjct: 68  D 68

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 64.5 bits (157), Expect = 1e-14
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLD-LSGNGRD---------FIEIQNSYATL 90
           +D Y +L  +P+  I ++K  YQ L  +YH D  S +            FIEI  ++  L
Sbjct: 10  KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69

Query: 91  SDPTARAVYDM 101
            +   +  YD+
Sbjct: 70  GNEETKREYDL 80

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 62.8 bits (153), Expect = 1e-14
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 28  GFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQ 84
           G SG     +    D Y VL V  T +  +IK AY+ LA+ +H D +   G    FI+I 
Sbjct: 4   GSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQIS 63

Query: 85  NSYATLSDPTARAVYD 100
            +Y  LS+   R  YD
Sbjct: 64  KAYEILSNEEKRTNYD 79

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.4 bits (152), Expect = 1e-14
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 30  SGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQN 85
           SG   D +     LY++L V  T T  +IK AY     +YH D +    +    F  I  
Sbjct: 6   SGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQ 65

Query: 86  SYATLSDPTARAVYD 100
           +Y  L   T R  YD
Sbjct: 66  AYVVLGSATLRRKYD 80

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 62.4 bits (152), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL-SGNGRD---------FIEIQNSYATL 90
           +D Y +L  +P+  + ++K  YQ L  +YH D  S +            FIEI  ++  L
Sbjct: 16  KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

Query: 91  SDPTARAVYDM 101
            +   +  YD+
Sbjct: 76  GNEETKKKYDL 86

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 60.3 bits (147), Expect = 6e-14
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
            D Y++L V    +  EIK AY  LAK YH D + +       F ++  +Y  LSD   R
Sbjct: 7   GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66

Query: 97  AVYD 100
             YD
Sbjct: 67  KQYD 70

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 60.3 bits (147), Expect = 7e-14
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARA 97
            D YE+L V    +  ++K AY+ LA  +H D +   G    F  I  +YA LS+P  R 
Sbjct: 7   GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66

Query: 98  VYD 100
            YD
Sbjct: 67  QYD 69

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 61.3 bits (149), Expect = 7e-14
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 37  AEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSD 92
           +ED  D Y +L  +  +++ +I   ++  A   H D           F ++Q +   L++
Sbjct: 16  SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN 75

Query: 93  PTARAVYD 100
             +RA YD
Sbjct: 76  EESRARYD 83

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 62.2 bits (151), Expect = 1e-13
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 38  EDGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTA 95
           E+   L ++L +E +    I  ++ AY    K +H D  G+     ++   Y  + D   
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVK 67

Query: 96  RAVYD 100
            A   
Sbjct: 68  YAHQP 72

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 63.0 bits (153), Expect = 1e-13
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           ++ Y +L V  T +  EI+ A++ LA   H D + N  +    F++I  +Y  L D   R
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 97  AVYD 100
             YD
Sbjct: 62  KKYD 65

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 59.5 bits (145), Expect = 1e-13
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 40  GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL---SGNGRDFIEIQNSYATLSDPTAR 96
           G+D Y+ L +    +  EIK AY+  A  YH D     G    F EI  +Y  LSDP  R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 97  AVYD 100
            ++D
Sbjct: 62  EIFD 65

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 59.2 bits (144), Expect = 2e-13
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 35  DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRD----FIEIQNSYAT 89
            G+    D YEVL V    +   IK AY+ LA  +H D +  N  +    F ++  +Y  
Sbjct: 3   SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEV 62

Query: 90  LSDPTARAVYD 100
           LSD   R +YD
Sbjct: 63  LSDAKKRDIYD 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 59.4 bits (144), Expect = 4e-13
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 41  RDLYEVLRVEPT-TTILEIKMAYQSLAKVYHLDLSGNGRD-------FIEIQNSYATLSD 92
            + Y+VL V        ++  AY++LA+ +H D   N  +       F  I  +Y TL D
Sbjct: 15  ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74

Query: 93  PTARAVYD 100
             A+  YD
Sbjct: 75  DEAKTNYD 82

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 58.1 bits (141), Expect = 5e-13
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---RDFIEIQNSYATLSDPTARA 97
              Y++L V  + +  +IK A+  LA  YH D + +      F EI  +Y TLSD   R 
Sbjct: 7   GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK 66

Query: 98  VYD 100
            YD
Sbjct: 67  EYD 69

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 58.1 bits (141), Expect = 6e-13
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 35  DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRD----FIEIQNSYAT 89
            G+    + YEVL V+ + +  +IK AY+ LA  +H D +  N  +    F  +  +Y  
Sbjct: 3   SGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEV 62

Query: 90  LSDPTARAVYD 100
           LSD   R++YD
Sbjct: 63  LSDSKKRSLYD 73

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 58.1 bits (141), Expect = 8e-13
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-----FIEIQNSYATLSDPTA 95
              YE+L V  + +  +IK AY+  A  +H D + + ++     F E+  +Y  LSD   
Sbjct: 2   ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

Query: 96  RAVYD 100
           R +YD
Sbjct: 62  REIYD 66

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 61.1 bits (149), Expect = 9e-13
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS-GNGRD--FIEIQNSYATLSDPTARA 97
           +D Y +L V+PT  +  IK AY+ LA+ YH D+S  N  +  F ++  ++  L D   RA
Sbjct: 28  KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87

Query: 98  VYD 100
            YD
Sbjct: 88  EYD 90

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 57.6 bits (140), Expect = 1e-12
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           +D YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI+ +Y  L+D   R
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 97  AVYD 100
           A YD
Sbjct: 63  AAYD 66

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 37  AEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSD 92
               ++ Y +L V  T +  EI+ A++ LA   H D + N  +    F++I  +Y  L D
Sbjct: 17  GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 76

Query: 93  PTARAVYDM 101
              R  YD 
Sbjct: 77  EDLRKKYDK 85

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 56.7 bits (137), Expect = 3e-12
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-GRD--FIEIQNSYATLSDPTARA 97
           +D +++L V+P  +  E+  AY+ LA + H D     G +  F  + N+   L       
Sbjct: 27  KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86

Query: 98  VYD 100
              
Sbjct: 87  PSS 89

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 36  GAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-------RDFIEIQNSYA 88
                RD Y++L V+      EI  AY+ LA  +H D   N        + FI+I  +  
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436

Query: 89  TLSDPTARAVYDM 101
            LSDP  R  +D 
Sbjct: 437 VLSDPEMRKKFDD 449

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 48.8 bits (116), Expect = 3e-09
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 38  EDGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTA 95
            D   L E+L++          ++ AY+  + + H D  G+     E+ + + T      
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVY 67

Query: 96  RAVYDM 101
               ++
Sbjct: 68  NLRMNL 73

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 42  DLYEVLRVEPTTTI--LEIKMAYQSLAKVYHLDLSGNGRD---------FIEIQNSYATL 90
           D + +  +     +    + + +Q L + YH D   +G              I  ++ TL
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 91  SDPTARAVYDMCL 103
             P  RA Y + L
Sbjct: 62  RHPLMRAEYLLSL 74

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 47.4 bits (113), Expect = 9e-09
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-----FIEIQNSYATLSDPTA 95
           +++  V+         E K   + L   +H D +    D     F  +QN    L     
Sbjct: 16  KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK--- 72

Query: 96  RAVYD 100
           +A  D
Sbjct: 73  QAFLD 77

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 41  RDLYEVLRVEPTTTIL-------EIKMAYQSLAKVYHLDLSGNGRD-FIEIQNSYATLSD 92
              YE+        +         ++  Y+ L   +H D++  G +    +  +Y TL D
Sbjct: 11  STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKD 70

Query: 93  PTARAVYDMCL 103
           P  R+ Y + L
Sbjct: 71  PLRRSQYMLKL 81

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 42.9 bits (100), Expect = 2e-06
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 39  DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLD-LSGNGRD------FIEIQNSYATLS 91
            G   ++ + +    T  ++K  Y+    V H D  +G   +      F+E+ ++++   
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174

Query: 92  DPTARAVY 99
           +   + +Y
Sbjct: 175 NQGQKPLY 182

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 41  RDLYEVLRVEPTTTI--LEIKMAYQSLAKVYHLDLSGNGRD---------FIEIQNSYAT 89
           RD + ++    +  +   +++  YQ L ++ H D                   + ++Y T
Sbjct: 43  RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102

Query: 90  LSDPTARAVYDM 101
           L  P +R +Y +
Sbjct: 103 LLAPLSRGLYLL 114

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 37.3 bits (87), Expect = 4e-05
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 41 RDLYEVLRVEPTT-TILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTAR 96
          ++  ++L +   T T  ++K  ++ +    H D  G+     +I  +   L      
Sbjct: 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.9
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.89
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.89
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.89
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.89
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.89
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.88
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.88
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.88
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.88
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.88
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.88
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.87
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.86
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.86
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.86
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.85
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.83
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.82
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.82
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.82
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.81
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.81
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.81
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.8
2guz_A	71	Mitochondrial import inner membrane translocase su	99.8
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.78
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.77
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.77
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.73
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.72
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.7
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.68
2guz_B	65	Mitochondrial import inner membrane translocase su	99.33
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.29
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.71

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=5e-24  Score=133.95  Aligned_cols=69  Identities=33%  Similarity=0.473  Sum_probs=63.1

Q ss_pred             CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724           35 DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMCL  103 (103)
Q Consensus        35 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~l  103 (103)
                      .......|||+||||+++++.++||++|+++++++|||++++    .+.|+.|++||++|+||.+|..||+.|
T Consensus        11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            334667899999999999999999999999999999999864    679999999999999999999999864

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.89  E-value=2.4e-23  Score=125.20  Aligned_cols=63  Identities=37%  Similarity=0.578  Sum_probs=59.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|||+||||+++++.++||++|+++++++|||++++   .+.|+.|++||++|+||.+|..||..
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   67 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRY   67 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            4689999999999999999999999999999999853   68999999999999999999999975

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.89  E-value=2.3e-23  Score=124.15  Aligned_cols=65  Identities=32%  Similarity=0.543  Sum_probs=60.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||+++++.++|+++|+++++++|||++++ .+.|+.|++||++|+||.+|..||+.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   70 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQG   70 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            356799999999999999999999999999999999875 78999999999999999999999974

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=125.39  Aligned_cols=65  Identities=35%  Similarity=0.545  Sum_probs=60.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||+++++.++||++|+++++++|||++++    .+.|+.|++||++|+||.+|..||..
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   72 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAY   72 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            456799999999999999999999999999999999864    67999999999999999999999975

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=2.4e-23  Score=125.47  Aligned_cols=65  Identities=34%  Similarity=0.504  Sum_probs=60.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||..
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   71 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQF   71 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence            356799999999999999999999999999999999854   67999999999999999999999975

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.89  E-value=1.6e-23  Score=130.14  Aligned_cols=66  Identities=27%  Similarity=0.531  Sum_probs=61.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----------GRDFIEIQNSYATLSDPTARAVYDMCL  103 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~d~~~R~~Yd~~l  103 (103)
                      ....|||+||||+++++.++||++|+++++++|||+++.          .+.|+.|++||++|+||.+|..||..|
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   88 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            567899999999999999999999999999999999752          578999999999999999999999764

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=5.9e-23  Score=126.49  Aligned_cols=65  Identities=35%  Similarity=0.513  Sum_probs=60.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||+++++.++||++|+++++++|||++++   ++.|+.|++||++|+||.+|..||..
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   81 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHY   81 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence            456799999999999999999999999999999999864   68999999999999999999999974

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=4.2e-23  Score=125.39  Aligned_cols=64  Identities=36%  Similarity=0.520  Sum_probs=59.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ...|||+||||+++++.++||++|+++++++|||+++.     .+.|+.|++||++|+||.+|..||..
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   75 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRY   75 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHT
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence            45799999999999999999999999999999999865     46899999999999999999999975

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=3.6e-23  Score=127.45  Aligned_cols=65  Identities=34%  Similarity=0.508  Sum_probs=60.8

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||+++++.++||++|+++++++|||++++   .+.|+.|++||++|+||.+|..||..
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~   71 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTL   71 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHT
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            456799999999999999999999999999999999875   67899999999999999999999975

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=6.4e-23  Score=131.46  Aligned_cols=65  Identities=25%  Similarity=0.361  Sum_probs=61.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||+++++.++||++|+++++++|||++++    .+.|+.|++||++|+||.+|..||+.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   85 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW   85 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            456899999999999999999999999999999999874    78999999999999999999999974

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.5e-23  Score=127.29  Aligned_cols=64  Identities=33%  Similarity=0.597  Sum_probs=60.3

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG-NGRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ...|||+||||+++++.++||++|+++++++|||+++ +.+.|++|++||++|+||.+|..||..
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   70 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY   70 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            5679999999999999999999999999999999984 578999999999999999999999974

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=2.2e-22  Score=128.50  Aligned_cols=65  Identities=38%  Similarity=0.588  Sum_probs=60.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|+|+||||+++++.++||++|+++++++|||++++    .+.|+.|++||++|+||.+|..||..
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   82 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKY   82 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            456799999999999999999999999999999999875    67899999999999999999999974

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.1e-22  Score=126.06  Aligned_cols=64  Identities=33%  Similarity=0.530  Sum_probs=59.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ...|||+||||+++++.++||++|+++++++|||+++.     ++.|+.|++||++|+||.+|..||..
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~   75 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRA   75 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            45799999999999999999999999999999999864     56899999999999999999999974

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.86  E-value=2.6e-22  Score=126.31  Aligned_cols=62  Identities=32%  Similarity=0.532  Sum_probs=58.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .|||+||||+++++.++||++|+++++++|||++++     .+.|+.|++||++|+||.+|..||..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~   68 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRY   68 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            589999999999999999999999999999999864     46899999999999999999999964

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.86  E-value=1.9e-22  Score=127.43  Aligned_cols=63  Identities=40%  Similarity=0.598  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ..|||+||||+++++.++||++|+++++++|||++++    ++.|++|++||++|+||.+|..||..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   68 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY   68 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            4689999999999999999999999999999999863    67899999999999999999999975

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.86  E-value=2.2e-22  Score=128.26  Aligned_cols=65  Identities=31%  Similarity=0.415  Sum_probs=60.5

Q ss_pred             CCccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTT-TILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a-~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||++++ +.++||++|+++++++|||++++       .+.|++|++||++|+||.+|..||..
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~   84 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY   84 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            4567999999999999 99999999999999999999864       57899999999999999999999975

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.85  E-value=7.8e-22  Score=132.46  Aligned_cols=65  Identities=29%  Similarity=0.567  Sum_probs=59.8

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----------GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||||+++++.++||++|+++++++|||+++.          .+.|+.|++||++|+||.+|+.||..
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~   81 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQ   81 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456799999999999999999999999999999999854          37899999999999999999999964

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.83  E-value=2.1e-21  Score=117.65  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724           39 DGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD  100 (103)
Q Consensus        39 ~~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd  100 (103)
                      +..++|+||||+++  ++.++||++||++++++|||++++.+.|++|++||++|+|+.+|..++
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            44689999999999  999999999999999999999999999999999999999999998754

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=3.9e-21  Score=118.92  Aligned_cols=61  Identities=23%  Similarity=0.347  Sum_probs=56.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhhHHh
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG---NGRDFIEIQNSYATLSDPTARAV   98 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~---~~~~~~~i~~Ay~~L~d~~~R~~   98 (103)
                      ....|||+||||+++++.++||++|++++++||||+++   ..+.|++|++||++|+||.+|..
T Consensus        24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            45689999999999999999999999999999999984   47899999999999999998864

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=132.05  Aligned_cols=64  Identities=20%  Similarity=0.446  Sum_probs=57.6

Q ss_pred             CCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ....|||+||||+++  ++.++||++||++++++|||++++         .+.|+.|++||++|+||.+|..||.
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            346799999999986  789999999999999999999853         3478999999999999999999985

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.82  E-value=3.5e-22  Score=128.65  Aligned_cols=63  Identities=19%  Similarity=0.257  Sum_probs=59.7

Q ss_pred             CccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           39 DGRDLYEVLRVEPTTTI--LEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      +..++|+||||+++++.  ++||++||++++++|||++++.++|++|++||++|+||.+|+.||.
T Consensus         6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A            6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhh
Confidence            45689999999999998  9999999999999999999999999999999999999999999983

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.81  E-value=1.8e-20  Score=129.48  Aligned_cols=62  Identities=34%  Similarity=0.538  Sum_probs=58.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .|||+||||+++++.++||+|||++++++|||++++    .+.|+.|++||++|+||.+|+.||+.
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~   67 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY   67 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            589999999999999999999999999999999853    67899999999999999999999963

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.81  E-value=1.4e-21  Score=133.89  Aligned_cols=64  Identities=20%  Similarity=0.293  Sum_probs=57.5

Q ss_pred             CccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTT--ILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      +..|+|+||||+++|+  .++||+|||++++++|||++++++.|++|++||++|+||.+|+.||+.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~   74 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF   74 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            4579999999999998  699999999999999999999999999999999999999999999963

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.80  E-value=2e-20  Score=127.80  Aligned_cols=62  Identities=23%  Similarity=0.404  Sum_probs=57.3

Q ss_pred             CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724           42 DLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDMCL  103 (103)
Q Consensus        42 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~~l  103 (103)
                      |||+||||++++  +.++||++|++++++||||++++         .+.|..|++||++|+||.+|..||..|
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  99999999999999999999754         258999999999999999999999653

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.2e-20  Score=110.96  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=54.7

Q ss_pred             CCccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhH
Q 042724           38 EDGRDLYEVLRVEP-TTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTAR   96 (103)
Q Consensus        38 ~~~~d~y~iLgv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R   96 (103)
                      +...++|+||||++ +++.++|+++||++++++|||++++.+.|++|++||++|+|+..|
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            34568999999999 799999999999999999999999999999999999999998765

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.78  E-value=9e-21  Score=140.72  Aligned_cols=65  Identities=35%  Similarity=0.601  Sum_probs=0.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      +...|||+||||+++|+.+|||+|||+++++||||++++   +++|++|++||++|+||.+|+.||+.
T Consensus        25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   92 (329)
T 3lz8_A           25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQL   92 (329)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence            456799999999999999999999999999999999854   67899999999999999999999974

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.77  E-value=7.2e-20  Score=112.98  Aligned_cols=64  Identities=16%  Similarity=0.061  Sum_probs=56.7

Q ss_pred             CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHh
Q 042724           35 DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAV   98 (103)
Q Consensus        35 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~   98 (103)
                      .......++|+||||+++++.++||++||+++++||||++++     ++.|+.|++||++|+|...|..
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            334566799999999999999999999999999999999875     5789999999999999877643

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.77  E-value=1.1e-19  Score=125.25  Aligned_cols=65  Identities=22%  Similarity=0.370  Sum_probs=59.0

Q ss_pred             CCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           38 EDGRDLYEVL------RVEP-TTTILEIKMAYQSLAKVYHLDLSG-NGRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        38 ~~~~d~y~iL------gv~~-~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ....|||+||      |+.+ +++.++||++||++++++|||+++ ..+.|..|++||++|+||.+|..||..
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            4567999999      4655 899999999999999999999987 578999999999999999999999964

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.73  E-value=5e-19  Score=121.87  Aligned_cols=59  Identities=15%  Similarity=0.313  Sum_probs=55.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhh
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVY   99 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Y   99 (103)
                      .|+|+||||++.++.++||++||++++++|||++++       ++.|+.|++||++|+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            699999999999999999999999999999999743       45899999999999999999887

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.72  E-value=1.3e-18  Score=110.65  Aligned_cols=56  Identities=14%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHcCChhh
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYATLSDPTA   95 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~d~~~   95 (103)
                      ...|||+|||++. |+.++||+|||++++++|||++++           ++.|+.|++||++|+|+..
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            3479999999996 999999999999999999999642           5689999999999999863

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.70  E-value=1.6e-18  Score=138.53  Aligned_cols=68  Identities=31%  Similarity=0.475  Sum_probs=40.0

Q ss_pred             CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           35 DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        35 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .......|||+||||+++|+.++||+|||++++++|||++++    .+.|++|++||++|+||.+|+.||+.
T Consensus        15 ~~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~   86 (780)
T 3apo_A           15 IEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY   86 (780)
T ss_dssp             --------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhh
Confidence            344567899999999999999999999999999999999853    66899999999999999999999974

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.68  E-value=6.1e-18  Score=105.09  Aligned_cols=52  Identities=13%  Similarity=0.233  Sum_probs=47.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCC
Q 042724           41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSD   92 (103)
Q Consensus        41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d   92 (103)
                      .++|++|||++.++.++||+|||+++++||||++++       ++.|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999753       4589999999999964

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.2e-12  Score=76.26  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 042724           42 DLYEVLRVEPT---TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDP   93 (103)
Q Consensus        42 d~y~iLgv~~~---a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~   93 (103)
                      +-|.||||+++   ++.++|+++||+|....|||++++......|++|++.|...
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            56899999999   99999999999999999999999999999999999998643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.29  E-value=2.1e-12  Score=94.25  Aligned_cols=62  Identities=37%  Similarity=0.530  Sum_probs=52.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+.       ++.|+.|.+||++|+||++|..||+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            3489999999999999999999999999999999864       4589999999999999999999996

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.71  E-value=0.049  Score=42.79  Aligned_cols=47  Identities=15%  Similarity=0.160  Sum_probs=37.0

Q ss_pred             CccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 042724           39 DGRDLYEVLRVEPTTTI--LEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYAT   89 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~   89 (103)
                      ...|+|.+||++.....  .+|+++||++++..+++    .+++..|..|+.|
T Consensus       627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV  675 (681)
T ss_dssp             CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence            34459999999766544  67999999999966654    4788889988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-15
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	4e-13
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-11
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-10
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-10
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	3e-10
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	8e-08
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-07

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 62.3 bits (151), Expect = 4e-15
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 38  EDGRDLYEVLRVEP--TTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTA 95
            D   L E+L++          ++ AY+  + + H D  G+     E+ + + T      
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVY 67

Query: 96  RAVYDM 101
               ++
Sbjct: 68  NLRMNL 73

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (139), Expect = 4e-13
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----------FIEIQNSYATL 90
           +D Y +L  +P+  + ++K  YQ L  +YH D                 FIEI  ++  L
Sbjct: 16  KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

Query: 91  SDPTARAVYDM 101
            +   +  YD+
Sbjct: 76  GNEETKKKYDL 86

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.8 bits (129), Expect = 1e-11
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLS 91
           G   ++ + +    T  ++K  Y+    V H D +            F+E+ ++++   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 92 DPTARAVY 99
          +   + +Y
Sbjct: 91 NQGQKPLY 98

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 51.7 bits (123), Expect = 1e-10
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 38  EDGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTA 95
           E+   L ++L +E +    I  ++ AY    K +H D  G+     ++   Y  + D   
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVK 64

Query: 96  RAVYD 100
            A   
Sbjct: 65  YAHQP 69

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (120), Expect = 2e-10
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
           +D YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI+ +Y  L+D   R
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 97  AVYDM 101
           A YD 
Sbjct: 63  AAYDQ 67

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 50.0 bits (119), Expect = 3e-10
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 42  DLYEVLRVEPTTTI--LEIKMAYQSLAKVYHLDLSGNGRD---------FIEIQNSYATL 90
           D + +  +     +    + + +Q L + YH D   +G              I  ++ TL
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 91  SDPTARAVYDMCL 103
             P  RA Y + L
Sbjct: 62  RHPLMRAEYLLSL 74

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 8e-08
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 40  GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDF---IEIQNSYATLSDPTAR 96
           G+D Y+ L +    +  EIK AY+  A  YH D +          EI  +Y  LSDP  R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 97  AVYDM 101
            ++D 
Sbjct: 62  EIFDR 66

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 1e-07
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 8/66 (12%)

Query: 41  RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIE-----IQNSYATLSDPTA 95
           +++  V+         E K   + L   +H D +    D        +QN    L     
Sbjct: 16  KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK--- 72

Query: 96  RAVYDM 101
           +A  D 
Sbjct: 73  QAFLDQ 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.91
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.89
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.89
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.85
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.82
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.72
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	90.94

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.1e-25  Score=131.02  Aligned_cols=63  Identities=40%  Similarity=0.598  Sum_probs=58.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .+|||+||||+++|+.++||+||+++++++|||++++    ++.|..|++||+||+||.+|..||+.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~   68 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY   68 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            4699999999999999999999999999999999754    56799999999999999999999964

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-24  Score=127.46  Aligned_cols=63  Identities=37%  Similarity=0.578  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      .+|||+||||+++++.++|++||+++++++|||++.+   .+.|..|++||+||+||.+|+.||+.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~   67 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRY   67 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            4699999999999999999999999999999999855   57899999999999999999999974

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=5.4e-24  Score=131.48  Aligned_cols=64  Identities=28%  Similarity=0.559  Sum_probs=58.6

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----------GRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ...|||+||||+++++.++||++|++++++||||++..          ++.|+.|++||++|+||.+|+.||..
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~   87 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ   87 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            44699999999999999999999999999999999743          46799999999999999999999964

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.89  E-value=4.1e-25  Score=140.68  Aligned_cols=64  Identities=20%  Similarity=0.313  Sum_probs=60.5

Q ss_pred             CccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724           39 DGRDLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMC  102 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~  102 (103)
                      ...+||+||||+++|  +.++||+||++|++++|||++++.+.|++|++||+||+||.+|+.||..
T Consensus         6 ~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            456899999999998  7889999999999999999999999999999999999999999999964

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.85  E-value=1.1e-22  Score=121.97  Aligned_cols=64  Identities=17%  Similarity=0.273  Sum_probs=60.4

Q ss_pred             CCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724           38 EDGRDLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM  101 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~  101 (103)
                      ....++|+||||++++  +.++||+||+++++++|||++++.+.|++|++||++|+|+.+|..||.
T Consensus         8 ~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~   73 (79)
T d1fafa_           8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHcc
Confidence            3567899999999988  999999999999999999999999999999999999999999999985

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.8e-21  Score=114.76  Aligned_cols=63  Identities=22%  Similarity=0.389  Sum_probs=55.2

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724           41 RDLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDMCL  103 (103)
Q Consensus        41 ~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~~l  103 (103)
                      .|||+||||++.+  +.++|+++|+++++++|||+...         ...|..|++||++|+||.+|+.|+-.|
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            3899999999864  58999999999999999999632         457899999999999999999998543

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1.2e-19  Score=112.56  Aligned_cols=61  Identities=16%  Similarity=0.337  Sum_probs=55.5

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhh
Q 042724           39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVY   99 (103)
Q Consensus        39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Y   99 (103)
                      ...+.|++|||+..++.++||+||+++++.+|||++++       ++.|+.|++||++|+||.+|..|
T Consensus        31 ~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            34578999999999999999999999999999998653       45799999999999999999987

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.8e-19  Score=107.83  Aligned_cols=59  Identities=17%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhH
Q 042724           38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTAR   96 (103)
Q Consensus        38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R   96 (103)
                      ....++|+||||+.+++.+|||+||++++++||||++++     ++.|+.|++||++|+++..+
T Consensus        13 ~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~~   76 (88)
T d1iura_          13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            345799999999999999999999999999999999864     56899999999999754433

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.94  E-value=0.2  Score=26.37  Aligned_cols=46  Identities=17%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcc-HHHHHHH---HHHHHHc-CCh-hhHHhhhhc
Q 042724           57 EIKMAYQSLAKVYHLDLSGN-GRDFIEI---QNSYATL-SDP-TARAVYDMC  102 (103)
Q Consensus        57 eIk~ayr~l~~~~hPD~~~~-~~~~~~i---~~Ay~~L-~d~-~~R~~Yd~~  102 (103)
                      |.+++|++|.+..+=+-.-. ++.++.|   ..-|..| +|| ++++.||..
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y   52 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY   52 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHH
Confidence            56889999999876655544 5566643   3789999 688 789999865