Citrus Sinensis ID: 042751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MGTSSRKLKAIFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccHcccccccccccccEccccEEEccccccccccccccccccccEEcccccccc
Coil and Loop (DISEMBL)
MGTSSRKLKAIFSSLAVTLLFMISHsqvafsfdfedvdeeevyvldrpvpdhsprsrLLLSSIrkgaqcsadhknicngvsanngtsLLHCCKMHCrnilgdknncgkcgskckfgqlccngtctnvfdneahcgkcnkkcprgvrcefgncgya
Flexible Loop (DISEMBL)
MGTSSRKLKAIFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYvldrpvpdhsprsRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGkcnkkcprgvrcefgncgya
Low Complexity Region (SEG)
MGTSSRKLKAIFSSLAVTLLFMISHSQvafsfdfedvdeeevyvldRPVPDHSPrsrlllssirKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNcgkcgskckfgQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA
Disordered region (IsUnstruct)
********KAIFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYVLDR***********LLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG**
Disordered Region (DISOPRED)
******K***IFSSLAVTLLFMISHSQV***************************************QCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA
Disordered Region (DISEMBL)
MGTSSRKLKAIFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA
Disordered Region (DISPRO)
****SRKLKAIFSSLAVTLLFMISHSQ*************EVYVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTSSRKLKAIFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
15219205	168	Stigma-specific Stig1 family protein [Ar	0.922	0.851	0.509	1e-33
297830086	166	hypothetical protein ARALYDRAFT_897805 [	0.941	0.879	0.509	1e-33
255634094	158	unknown [Glycine max] gi|255639523|gb|AC	0.864	0.848	0.570	6e-33
356544048	158	PREDICTED: uncharacterized protein LOC10	0.864	0.848	0.570	7e-33
357452973	143	hypothetical protein MTR_2g085360 [Medic	0.851	0.923	0.489	6e-32
388512499	160	unknown [Lotus japonicus]	0.729	0.706	0.601	2e-30
388509016	160	unknown [Lotus japonicus]	0.729	0.706	0.601	3e-30
224128107	88	predicted protein [Populus trichocarpa]	0.567	1.0	0.693	2e-27
357452975	154	BIP1 [Medicago truncatula] gi|355485812|	0.709	0.714	0.601	3e-27
224114920	88	predicted protein [Populus trichocarpa]	0.567	1.0	0.659	6e-26

>gi|15219205|ref|NP_175721.1| Stigma-specific Stig1 family protein [Arabidopsis thaliana] gi|9454544|gb|AAF87867.1|AC022520_11 Unknown protein [Arabidopsis thaliana] gi|51970222|dbj|BAD43803.1| unknown protein [Arabidopsis thaliana] gi|332194773|gb|AEE32894.1| Stigma-specific Stig1 family protein [Arabidopsis thaliana]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 100/155 (64%), Gaps = 12/155 (7%)

Query: 13  SSLAVTLLFMISHSQVAFSFDFEDV----DEEEVYVLDRPVP-----DHSPRSRLLLS-- 61
           S L++ L F+I  +  + S   ++V    D+ E Y+LD           S ++RLL+S  
Sbjct: 14  SLLSLILYFLIIATSKSNSVLADEVVDQEDDPEYYILDETPSILSNVTISSKTRLLVSHY 73

Query: 62  -SIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCC 120
             I+KG +C  +  NICNGV AN GTSLLHCCK HCRN+LGD+NNCG+CG KC FGQ CC
Sbjct: 74  KKIKKGMRCHVESYNICNGVKANKGTSLLHCCKKHCRNVLGDRNNCGRCGHKCGFGQRCC 133

Query: 121 NGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
            G CT V  N  HCGKC +KC  GV+CE+G CGYA
Sbjct: 134 GGVCTYVNFNPNHCGKCTRKCASGVKCEYGYCGYA 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830086|ref|XP_002882925.1| hypothetical protein ARALYDRAFT_897805 [Arabidopsis lyrata subsp. lyrata] gi|297328765|gb|EFH59184.1| hypothetical protein ARALYDRAFT_897805 [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 100/159 (62%), Gaps = 13/159 (8%)

Query: 7   KLKAIFSSLAVTLLFMI--SHSQVAFSFDFEDVDEEEVYVLDRPVPDHS-----PRSRLL 59
           KL  + S +  +L+     +HS +A     ED    E Y+LD     HS      ++RLL
Sbjct: 11  KLMPLISLILYSLIIATVNTHSVLAEEVTKED---PEFYILDETPTIHSNLTISSKTRLL 67

Query: 60  LS---SIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFG 116
           +S    IRKG +C     NIC+GV A+ GTSLL+CCK HCRNILGD NNCG+CG KC+FG
Sbjct: 68  VSHYKKIRKGMRCHVAGYNICDGVKADKGTSLLYCCKKHCRNILGDMNNCGRCGHKCRFG 127

Query: 117 QLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
           Q CC G CT V  N  HCGKCNKKC  G++CE+G CGYA
Sbjct: 128 QRCCGGICTYVGFNPKHCGKCNKKCKSGIKCEYGYCGYA 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634094|gb|ACU17410.1| unknown [Glycine max] gi|255639523|gb|ACU20056.1| unknown [Glycine max]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 91/135 (67%), Gaps = 1/135 (0%)

Query: 21  FMISHSQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGV 80
           F++S + +    DF + +EEE YVLD P+P   PRSR L + I+KG QC  +  NICNGV
Sbjct: 25  FVVSSTDIDQDHDF-NEEEEEEYVLDTPIPHLGPRSRFLATIIKKGRQCDRETNNICNGV 83

Query: 81  SANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKK 140
            AN G  LL CCK HCRN+L DKNNC  CG+KCK G+ CCNG CTNV  N  HCGKCNK+
Sbjct: 84  RANKGRDLLFCCKKHCRNVLSDKNNCSVCGNKCKQGERCCNGVCTNVLSNVRHCGKCNKQ 143

Query: 141 CPRGVRCEFGNCGYA 155
           C  G  C  G CGYA
Sbjct: 144 CSPGDSCGNGVCGYA 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544048|ref|XP_003540467.1| PREDICTED: uncharacterized protein LOC100795151 [Glycine max]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 91/135 (67%), Gaps = 1/135 (0%)

Query: 21  FMISHSQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGV 80
           F++S + +    DF + +EEE YVLD P+P   PRSR L + I+KG QC  +  NICNGV
Sbjct: 25  FVVSSTDIDQDHDF-NEEEEEEYVLDTPIPHLGPRSRFLATIIKKGRQCDRETNNICNGV 83

Query: 81  SANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKK 140
            AN G  LL CCK HCRN+L DKNNC  CG+KCK G+ CCNG CTNV  N  HCGKCNK+
Sbjct: 84  RANKGRDLLFCCKKHCRNVLSDKNNCSVCGNKCKQGERCCNGVCTNVLSNVRHCGKCNKQ 143

Query: 141 CPRGVRCEFGNCGYA 155
           C  G  C  G CGYA
Sbjct: 144 CSPGDSCGNGVCGYA 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452973|ref|XP_003596763.1| hypothetical protein MTR_2g085360 [Medicago truncatula] gi|355485811|gb|AES67014.1| hypothetical protein MTR_2g085360 [Medicago truncatula]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 93/145 (64%), Gaps = 13/145 (8%)

Query: 11  IFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLSSIRKGAQCS 70
           +FS + +TL     H Q+AFS           + LD P P +  RSR L ++I+KG++C+
Sbjct: 12  LFSFITLTL-----HYQIAFS--------TSTFELDSPFPHYKSRSRFLATTIKKGSKCN 58

Query: 71  ADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDN 130
              KNICNG+ AN GT LL CCK  C +++GD N+CG+CG KCK G+ CC G CTN+  N
Sbjct: 59  PIGKNICNGILANKGTELLQCCKKKCVDVIGDMNHCGQCGKKCKQGERCCGGVCTNILYN 118

Query: 131 EAHCGKCNKKCPRGVRCEFGNCGYA 155
             +CGKCNKKC RG+ C  G CGYA
Sbjct: 119 VNNCGKCNKKCKRGIPCRIGFCGYA 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512499|gb|AFK44311.1| unknown [Lotus japonicus]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 76/113 (67%)

Query: 43  YVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGD 102
           YVLD P+P   PRSR L S I+KG  C  +  NICNGV AN G  +L CCK HCRN+L D
Sbjct: 48  YVLDTPLPHLGPRSRFLASVIKKGTHCDRETNNICNGVPANKGRDMLFCCKKHCRNVLSD 107

Query: 103 KNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
           KNNCG CG+KCK G+ CC G CTNV  N  HCGKC K+C  G  C  G CGYA
Sbjct: 108 KNNCGVCGNKCKHGERCCGGVCTNVLSNVHHCGKCKKECSPGDLCGNGFCGYA 160

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509016|gb|AFK42574.1| unknown [Lotus japonicus]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 76/113 (67%)

Query: 43  YVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGD 102
           YVLD P+P   PRSR L S I+KG  C  +  NICNGV AN G  +L CCK HCRN+L D
Sbjct: 48  YVLDTPLPHLGPRSRFLASVIKKGTHCDRETNNICNGVPANKGRDMLFCCKKHCRNVLSD 107

Query: 103 KNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
           KNNCG CG+KCK G+ CC G CTNV  N  HCGKC K+C  G  C  G CGYA
Sbjct: 108 KNNCGVCGNKCKHGERCCGGVCTNVLSNVHHCGKCKKECSPGDLCGNGFCGYA 160

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128107|ref|XP_002329083.1| predicted protein [Populus trichocarpa] gi|222869752|gb|EEF06883.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 71/88 (80%)

Query: 68  QCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNV 127
           +C+A+  NICNGVSAN GT LL+CCK HCRN+LGDKNNCG CG+KCKF + CCNG CT++
Sbjct: 1   RCNAERNNICNGVSANKGTGLLYCCKKHCRNVLGDKNNCGMCGNKCKFAESCCNGRCTDI 60

Query: 128 FDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
             N  HCGKCNKKC  GVRC +G CGYA
Sbjct: 61  ISNVNHCGKCNKKCAPGVRCHYGTCGYA 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452975|ref|XP_003596764.1| BIP1 [Medicago truncatula] gi|355485812|gb|AES67015.1| BIP1 [Medicago truncatula] gi|388496310|gb|AFK36221.1| unknown [Medicago truncatula]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 3/113 (2%)

Query: 43  YVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGD 102
           YVLD     H  RSR L S I+KG QC+ +  NICNGV AN G  LL CCK HCRN+L D
Sbjct: 45  YVLD---THHGSRSRFLASIIKKGRQCNRETNNICNGVRANKGNDLLFCCKKHCRNVLSD 101

Query: 103 KNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
           KNNC  CG+KCK G+ CCNG CTNV  N  HCGKC K+C  G  C  G CGYA
Sbjct: 102 KNNCNVCGNKCKQGERCCNGVCTNVLSNVRHCGKCKKECSNGDPCGNGFCGYA 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114920|ref|XP_002316893.1| predicted protein [Populus trichocarpa] gi|222859958|gb|EEE97505.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 72/88 (81%)

Query: 68  QCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNV 127
           +C+A+  N CNGVSAN GT LL+CCK HCRN+LGD+NNCG+CG+KCK G+ CCNG CTNV
Sbjct: 1   RCNAERYNKCNGVSANKGTGLLYCCKKHCRNVLGDENNCGQCGNKCKLGESCCNGKCTNV 60

Query: 128 FDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
             N ++CGKCN KC  GV+C++G CGYA
Sbjct: 61  IYNASNCGKCNNKCSPGVKCQYGTCGYA 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2037037	168	GRI "GRIM REAPER" [Arabidopsis	0.587	0.541	0.582	5e-28
TAIR|locus:2116407	152	AT4G26880 "AT4G26880" [Arabido	0.554	0.565	0.344	1e-11
TAIR|locus:2008006	174	AT1G50650 "AT1G50650" [Arabido	0.432	0.385	0.343	1.2e-10
TAIR|locus:2161605	163	AT5G55110 "AT5G55110" [Arabido	0.554	0.527	0.318	1.2e-10
TAIR|locus:504956323	140	AT1G11925 "AT1G11925" [Arabido	0.554	0.614	0.318	2e-10
TAIR|locus:2015863	154	AT1G50720 "AT1G50720" [Arabido	0.541	0.545	0.333	6.6e-10

TAIR|locus:2037037 GRI "GRIM REAPER" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 53/91 (58%), Positives = 60/91 (65%)

Query:    65 KGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNXXXXXXXXXXXQLCCNGTC 124
             KG +C  +  NICNGV AN GTSLLHCCK HCRN+LGD+NN           Q CC G C
Sbjct:    78 KGMRCHVESYNICNGVKANKGTSLLHCCKKHCRNVLGDRNNCGRCGHKCGFGQRCCGGVC 137

Query:   125 TNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
             T V  N  HCGKC +KC  GV+CE+G CGYA
Sbjct:   138 TYVNFNPNHCGKCTRKCASGVKCEYGYCGYA 168

GO:0005576 "extracellular region" evidence=ISM

GO:0005615 "extracellular space" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0010942 "positive regulation of cell death" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0080141 "regulation of jasmonic acid biosynthetic process" evidence=IMP

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IMP

TAIR|locus:2116407 AT4G26880 "AT4G26880" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/90 (34%), Positives = 39/90 (43%)

Query:    70 SADHKN----ICNGVSANNGTSLLHCCKMHCRNILGDKNNXXXXXXXXXXXQLCCNGTCT 125
             +ADH N    IC         S + CC   C ++  D NN           Q CC G C 
Sbjct:    63 AADHCNRNPEICTPYGGGGSNSTMTCCNNKCIDVSSDDNNCGACKNKCKFSQTCCRGQCV 122

Query:   126 NVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
              V  ++ HCG+CN  C  G  C +G C YA
Sbjct:   123 YVAYDKRHCGQCNHPCELGEFCVYGLCNYA 152

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008006 AT1G50650 "AT1G50650" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query:    89 LHCCKMHCRNILGDKNNXXXXXXXXXXXQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCE 148
             + CC+  C ++L D N+             CC+G C +   + ++CG+C  +C  G  CE
Sbjct:    72 MRCCRNQCVDVLSDPNHCRFCFKSCRFALSCCDGDCVDTNTDPSNCGQCGNECESGAPCE 131

Query:   149 FGNCGYA 155
             FG CGYA
Sbjct:   132 FGMCGYA 138

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2161605 AT5G55110 "AT5G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 28/88 (31%), Positives = 42/88 (47%)

Query:    69 CSADHKNICNGVSANNGTSL-LHCCKMHCRNILGDKNNXXXXXXXXXXXQLCCNGTCTNV 127
             C+ D++ IC+    + G +  + CC   C ++  D  N           Q CC G C  V
Sbjct:    77 CNKDNE-ICSSSDYSTGANATMACCNNKCMDLSTDDKNCGLCKNKCKFGQTCCRGQCVYV 135

Query:   128 FDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
               ++ HCG+CN +C  G  C +G C YA
Sbjct:   136 AYDKRHCGECNHRCDLGEFCVYGLCNYA 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504956323 AT1G11925 "AT1G11925" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/91 (31%), Positives = 44/91 (48%)

Query:    66 GAQCSADHKN-ICNGVSANNGTSLLHCCKMHCRNILGDKNNXXXXXXXXXXXQLCCNGTC 124
             GA  + D  + +C  +  + G +   CC+  C ++  +K N           ++CCNG C
Sbjct:    54 GATLTCDKSSKVCR-LKGSPGRN---CCRKKCVDLRTNKLNCGRCGKSCQYSEVCCNGYC 109

Query:   125 TNVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
              N   +  HCG C KKC +G  C +G C YA
Sbjct:   110 VNPMFDRRHCGGCFKKCKKGRSCAYGMCSYA 140

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015863 AT1G50720 "AT1G50720" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 30/90 (33%), Positives = 40/90 (44%)

Query:    70 SADHKN----ICNGVSANNGTSLLHCCKMHCRNILGDKNNXXXXXXXXXXXQLCCNGTCT 125
             +ADH N    IC      N T  + CC   C ++  D +N           Q CC G C 
Sbjct:    67 AADHCNKEEEICKSQGMYNST--MACCSNKCVDLAYDNDNCGACKNQCKFTQTCCRGECV 124

Query:   126 NVFDNEAHCGKCNKKCPRGVRCEFGNCGYA 155
              +  ++ HCG+CN  C  G  C +G C YA
Sbjct:   125 YLAYDKRHCGECNHSCLVGEFCVYGLCNYA 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.454    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       115   0.00091  102 3  11 22  0.44    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.09u 0.19s 10.28t   Elapsed:  00:00:01
  Total cpu time:  10.09u 0.19s 10.28t   Elapsed:  00:00:01
  Start:  Fri May 10 22:30:59 2013   End:  Fri May 10 22:31:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GRI	GRI (GRIM REAPER); Encodes GRIM REAPER (GRI), involved in the regulation of cell death induced by extracellular ROS (reactive oxygen species). Secreted into the extracellular space. (168 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT4G06656	transposable element gene; gypsy-like retrotransposon family (Athila), has a 3.5e-294 P-value b [...] (2808 aa)							•		0.821
	AT5G50040	invertase/pectin methylesterase inhibitor family protein; invertase/pectin methylesterase inhib [...] (175 aa)							•		0.571
	LCR57	LCR57 (Low-molecular-weight cysteine-rich 57); Encodes a member of a family of small,secreted, [...] (120 aa)			•						0.481
	SNX2b	SNX2b (SORTING NEXIN 2b); phosphoinositide binding / protein binding; SORTING NEXIN 2b (SNX2b); [...] (572 aa)				•					0.461
	PER9	peroxidase, putative; peroxidase, putative; FUNCTIONS IN- electron carrier activity, peroxidase [...] (346 aa)				•					0.456
	AT1G25330	basic helix-loop-helix (bHLH) family protein; basic helix-loop-helix (bHLH) family protein; FUN [...] (223 aa)				•					0.456
	AT1G72520	lipoxygenase, putative; lipoxygenase, putative; FUNCTIONS IN- electron carrier activity, oxidor [...] (926 aa)							•		0.408
	AT3G11990	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (172 aa)				•					0.407

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
pfam04885	136	pfam04885, Stig1, Stigma-specific protein, Stig1	9e-24

>gnl|CDD|218310 pfam04885, Stig1, Stigma-specific protein, Stig1

 Score = 89.8 bits (223), Expect = 9e-24
 Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 75  NICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAHC 134
            IC      +    + CC+  C ++  D+NNCG CG KCKFGQ CC G C ++  +  +C
Sbjct: 58  EICKTSGGLS--PGMTCCRNKCVDVSTDRNNCGSCGKKCKFGQTCCGGQCVDLNFDRRNC 115

Query: 135 GKCNKKCPRGVRCEFGNCGYA 155
           GKCN KC  G +C FG C YA
Sbjct: 116 GKCNNKCKSGEKCVFGLCNYA 136

This family represents the Stig1 cysteine rich plant protein. The STIG1 gene is developmentally regulated and expressed specifically in the stigmatic secretory zone. Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PF04885	136	Stig1: Stigma-specific protein, Stig1; InterPro: I	100.0
PF04885	136	Stig1: Stigma-specific protein, Stig1; InterPro: I	99.3
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	95.26
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	93.11
PF06459	274	RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR	86.95
PF11359	235	gpUL132: Glycoprotein UL132; InterPro: IPR021023 G	81.5
PF15240	179	Pro-rich: Proline-rich	81.31

>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein

Probab=100.00  E-value=7.7e-38  Score=243.89  Aligned_cols=97  Identities=41%  Similarity=1.035  Sum_probs=90.0

Q ss_pred             CCCCCCchhhcccccccccCCcccCcccCCCCCCCCcccccccceeeccccCCCCccccCCCCCCCccccCCeecccccC
Q 042751           51 DHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDN  130 (155)
Q Consensus        51 ~~~~~sRfLa~~~~~~~~C~k~~~~IC~~~~~~~g~~g~~cC~~~Cvd~~tD~~NCG~Cg~~C~~g~~CCgG~CVdl~tD  130 (155)
                      ...+.+|||++     ++|+++ |+||+..+  +.+++++||+++|||+.+|++|||+||++|++|++||+|+|||+.+|
T Consensus        40 ~~~~~~~~~~~-----~~C~~~-~~iC~~~~--~~~~~~~CC~~~Cvdv~~d~~nCG~Cg~~C~~g~~cC~G~Cvd~~~d  111 (136)
T PF04885_consen   40 VSSRPSRFLAH-----DTCNKD-PWICSAKG--KCSPGPTCCNNKCVDVSSDRNNCGACGNKCPYGQTCCGGQCVDLNSD  111 (136)
T ss_pred             ccCCccccccc-----cccCCC-chhhcCCC--CCCCCCcccCCcCCccCCCccccHhhcCCCCCCceecCCEeECCCCC
Confidence            34566899987     799997 79999776  44778999999999999999999999999999999999999999999


Q ss_pred             CCcchhcCCCCCCCCccCCceecCC
Q 042751          131 EAHCGKCNKKCPRGVRCEFGNCGYA  155 (155)
Q Consensus       131 ~~nCG~Cg~~C~~G~~C~~G~C~Ya  155 (155)
                      ++|||+||++|+.|+.|++|+|.||
T Consensus       112 ~~~CG~Cg~~C~~G~~C~~G~C~ya  136 (136)
T PF04885_consen  112 PRHCGACGNKCPPGQKCVYGMCGYA  136 (136)
T ss_pred             ccccCCCCCcCCCcCCcCCeECCCC
Confidence            9999999999999999999999998

The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.

>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein

Probab=99.30  E-value=5.8e-12  Score=98.71  Aligned_cols=44  Identities=36%  Similarity=0.840  Sum_probs=40.7

Q ss_pred             CCCCcccccccceeeccccCCCCccccCCCCCCCccccCCeecc
Q 042751           83 NNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTN  126 (155)
Q Consensus        83 ~~g~~g~~cC~~~Cvd~~tD~~NCG~Cg~~C~~g~~CCgG~CVd  126 (155)
                      .+..++++||+|+|||+.+|+.|||+||++|+.|+.|=.|.|..
T Consensus        92 ~~C~~g~~cC~G~Cvd~~~d~~~CG~Cg~~C~~G~~C~~G~C~y  135 (136)
T PF04885_consen   92 NKCPYGQTCCGGQCVDLNSDPRHCGACGNKCPPGQKCVYGMCGY  135 (136)
T ss_pred             CCCCCCceecCCEeECCCCCccccCCCCCcCCCcCCcCCeECCC
Confidence            45678899999999999999999999999999999999999864

The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=95.26  E-value=0.021  Score=42.42  Aligned_cols=16  Identities=25%  Similarity=0.314  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHh
Q 042751            9 KAIFSSLAVTLLFMIS   24 (155)
Q Consensus         9 ~~~~~l~~~~al~~~~   24 (155)
                      +|||.||+++.|||+|
T Consensus         6 ~llL~l~LA~lLlisS   21 (95)
T PF07172_consen    6 FLLLGLLLAALLLISS   21 (95)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4455555555555544

Some of them may be involved in resistance to environmental stress [].

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=93.11  E-value=0.086  Score=39.13  Aligned_cols=26  Identities=12%  Similarity=0.082  Sum_probs=17.1

Q ss_pred             CC-chhhHHHHHHHHHHHHHHHHHhhc
Q 042751            1 MG-TSSRKLKAIFSSLAVTLLFMISHS   26 (155)
Q Consensus         1 ~~-~~~~~l~~~~~l~~~~al~~~~~~   26 (155)
                      |+ |+++.|.++|++|++++.-|++..
T Consensus         1 MaSK~~llL~l~LA~lLlisSevaa~~   27 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISSEVAARE   27 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhhhhHH
Confidence            44 455666677777777777666654

Some of them may be involved in resistance to environmental stress [].

>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions

Probab=86.95  E-value=0.44  Score=41.36  Aligned_cols=20  Identities=25%  Similarity=0.394  Sum_probs=10.9

Q ss_pred             cccccCCCCCCCCCCchhhc
Q 042751           42 VYVLDRPVPDHSPRSRLLLS   61 (155)
Q Consensus        42 ~~~ld~~~~~~~~~sRfLa~   61 (155)
                      .|+|++.+-.--+.=||||=
T Consensus       233 ~~~LeEstgYMep~Lr~lAv  252 (274)
T PF06459_consen  233 YFVLEESTGYMEPALRILAV  252 (274)
T ss_pred             EEEEeccchhHHHHHHHHHH
Confidence            38888744332334466654

In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane

>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []

Probab=81.50  E-value=2.5  Score=36.34  Aligned_cols=16  Identities=19%  Similarity=0.135  Sum_probs=12.2

Q ss_pred             cCCCCCCCCCCchhhc
Q 042751           46 DRPVPDHSPRSRLLLS   61 (155)
Q Consensus        46 d~~~~~~~~~sRfLa~   61 (155)
                      .+|.+..+||+||-|-
T Consensus       106 ssl~g~~SRR~~ipa~  121 (235)
T PF11359_consen  106 SSLFGSGSRRGRIPAG  121 (235)
T ss_pred             cccCCCCcccccCCCC
Confidence            4566778888999876

The function of this protein is not fully understood.

>PF15240 Pro-rich: Proline-rich

Probab=81.31  E-value=1.2  Score=36.83  Aligned_cols=22  Identities=23%  Similarity=0.239  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHhhccccccc
Q 042751           11 IFSSLAVTLLFMISHSQVAFSF   32 (155)
Q Consensus        11 ~~~l~~~~al~~~~~~~~~~~~   32 (155)
                      |||||.|..|+|+||-.++||-
T Consensus         2 LlVLLSvALLALSSAQ~~dEdv   23 (179)
T PF15240_consen    2 LLVLLSVALLALSSAQSTDEDV   23 (179)
T ss_pred             hhHHHHHHHHHhhhcccccccc
Confidence            3444444444556666555544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1jlza_	26	alpha-KTX, K+-channel blocker {Scorpion (Tityus ca	86.61

>d1jlza_ g.3.7.2 (A:) alpha-KTX, K+-channel blocker {Scorpion (Tityus cambridgei) [TaxId: 184226]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Short-chain scorpion toxins
domain: alpha-KTX, K+-channel blocker
species: Scorpion (Tityus cambridgei) [TaxId: 184226]

Probab=86.61  E-value=0.029  Score=30.76  Aligned_cols=20  Identities=45%  Similarity=1.150  Sum_probs=16.7

Q ss_pred             chhcCCCCCCCCccCCceec
Q 042751          134 CGKCNKKCPRGVRCEFGNCG  153 (155)
Q Consensus       134 CG~Cg~~C~~G~~C~~G~C~  153 (155)
                      ||+|-++|+....|.+|.|.
T Consensus         2 cgscrkkckgsgkcingrck   21 (26)
T d1jlza_           2 CGSCRKKCKGSGKCINGRCK   21 (26)
T ss_dssp             CSSHHHHTTSSEEEETTEEE
T ss_pred             ccchhhhcCCCCceECCcee
Confidence            78888888887888888884