Citrus Sinensis ID: 042759

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050-----

MTHQARRDSFPGQLAGPATADSDLAWPFGKLEGIDSDDIRETAYEVFFTSCRSSPGFGGRNAISFYSSHDNNNNNGGGDGGVGGGSGTGSGSPTARVNGGGVVQMTPTSRVKRALGLKMLKRSPCRRMSSVGASSNNPTSPGSHAPNNHLHNNSNNNFGHGHGHGGTSPAGNTNNYSTVPPPSRPRRPLTSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPIDKSNNFAIRLREIVRASETKPIDTGKNSDTMRALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVSITEGGLERGDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKESETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSGIGVVGTGQKLPMPPTTGRWNRADPNTILRVLCHRNDRAANQFLKKSFQLAKRR

cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccccc

cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHccHcccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHcHHHcHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHccccccc

mthqarrdsfpgqlagpatadsdlawpfgklegidsddiRETAYEVFFTscrsspgfggrnaISFYsshdnnnnngggdggvgggsgtgsgsptarvngggvvqmtptSRVKRALGlkmlkrspcrrmssvgassnnptspgshapnnhlhnnsnnnfghghghggtspagntnnystvpppsrprrpltSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLEllrhlkpsefndgheyhLWQRRQLKILEAGllqhpsvpidksnnFAIRLREIVRasetkpidtgknsdtMRALCNSVVSLswrsangtptdvchwadgfplNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWstlginrpihnVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELAndakkpdrEAIYVRMLSSVLASMQGWAEKRLLRYHdyfhrgtvgqienlLPLALLASKilgedvsitegglergdtkvvmdstgdrvdHYIRSSVKNAFTNIiengnlrtedsdgndlgeTGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEdsaecddggkgivremipYEVDSIILRQLRLWIQERINRGKECYLRakesetwnpksksepYAQSAVELMRHAkdtvddffeipigitdDLVHDLADGLQQLFREYTTFVascgarqsylptlppltrcnrdskfsklwkkaspctvavedvqqingsneghhprpstsrgtqRLYIRLNTLHYLVSHIHSldktlslspkivpssrsrfanhrrhtnsnsyfEHATNAIQSACQHVSEVAAYRLIFLdsnsvfyeslyvgdvanarVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGssrvfyrsdhEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILscetsgigvvgtgqklpmppttgrwnradpnTILRVLCHRNDRAANQFLKKSFQLAKRR

mthqarrdsfpgqlagpatadsdlawpFGKLEGIDSDDIRETAYEVFFtscrsspgfGGRNAISFYSSHDNNNNNGGGDGGVGGGSGTGSGSPTArvngggvvqmtptsrvkralglkmlkrspcrrmssvgassnnptSPGSHAPNNHLHNNSNNNFGHGHGHGGTSPAGNTNNYSTVPPPSRPRRPLTSAEIMRQQmkvteqsdnrlrKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLlqhpsvpidksnnFAIRLREivrasetkpidtgknsdtmrALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTwstlginrPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVsitegglergdtkvvmdstgdrvdhyirssVKNAFTNIIEngnlrtedsdgndLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVedsaecddggkgiVREMIPYEVDSIILRQLRLWIQERINRGKECylrakesetwnpksksePYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCgarqsylptlppltrCNRDSKFSKLWKKASPCTVAVEDVQQingsneghhprpstsrgTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSgigvvgtgqklpmppttgrwnradPNTILRVLCHRNDRAANQFLKKSFQLAKRR

MTHQARRDSFPGQLAGPATADSDLAWPFGKLEGIDSDDIRETAYEVFFTSCRSSPGFGGRNAISFYsshdnnnnngggdggvgggsgtgsgsPTARVNGGGVVQMTPTSRVKRALGLKMLKRSPCRRMSSVGASSNNPTSPGSHAPnnhlhnnsnnnfghghghggTSPAGNTNNYSTVpppsrprrpLTSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPIDKSNNFAIRLREIVRASETKPIDTGKNSDTMRALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRdetlvldevdellelMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENllplallaSKILGEDVSITEGGLERGDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKESETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSGIGVVGTGQKLPMPPTTGRWNRADPNTILRVLCHRNDRAANQFLKKSFQLAKRR

***********************LAWPFGKLEGIDSDDIRETAYEVFFTSCRSSPGFGG*********************************************************************************************************************************************************LMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPIDKSNNFAIRLREIVRA**************MRALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVSITEGGLERGDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENG***************GALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRA*********************LMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVED**********************RLYIRLNTLHYLVSHIHSLDKTLS************************YFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSGIGVVGTGQKLPMPPTTGRWNRADPNTILRVLCHRNDRAANQF***********

**********************DLAWPFGKLEGIDSDDIRETAYEVFFTSCRS***********************************************************RALG************************************************************************************VTE*SDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSV***********************************LCNS***********TPTDVCHWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAEL***********IYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVS******************GDRVDHYIRSSVKNAFT*******************ETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKES***************AVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLT****************************************TSRGTQRLYIRLNTLHYLVSHIHSLDKTLS*************************FEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTI**************************NRADPNTILRVLCHRNDRAANQFLKKSFQL****

**********PGQLAGPATADSDLAWPFGKLEGIDSDDIRETAYEVFFTSCRSSPGFGGRNAISFYSSHDNNNNNGGGDGGVGGGSGTGSGSPTARVNGGGVVQMTPTSRVKRALGLKMLKRSPC*****************SHAPNNHLHNNSNNNFGHGHGHGGTSPAGNTNNY***********PLTSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPIDKSNNFAIRLREIVRASETKPIDTGKNSDTMRALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVSITEGGLERGDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAK**************AQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGS*************TQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSGIGVVGTGQKLPMPPTTGRWNRADPNTILRVLCHRNDRAANQFLKKSFQLAKRR

*********************SDLAWPFGKLEGIDSDDIRETAYEVFFTSCRSSPGFGGRNAISFY*************************************************************************************************************************PLTSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPIDKSNNFAIRLREIVRASETKPIDTGKNSDTMRALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVSITE*********VVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTE**D**DLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKESETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKA***************************RGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSR***AN****TNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETS****************TGRWNRADPNTILRVLCHRNDRAANQFLKKSFQLA***

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1055
224110616		1028	predicted protein [Populus trichocarpa]	0.966	0.992	0.716	0.0
297823135		1040	hypothetical protein ARALYDRAFT_345092 [	0.977	0.991	0.723	0.0
15226107		1039	uncharacterized protein [Arabidopsis tha	0.976	0.991	0.722	0.0
26451960		1039	unknown protein [Arabidopsis thaliana] g	0.976	0.991	0.721	0.0
224102215		1028	predicted protein [Populus trichocarpa]	0.968	0.994	0.715	0.0
449433231		1016	PREDICTED: uncharacterized protein LOC10	0.953	0.990	0.721	0.0
449486765		1016	PREDICTED: uncharacterized LOC101210328	0.953	0.990	0.721	0.0
255575827		1057	conserved hypothetical protein [Ricinus	0.981	0.980	0.710	0.0
62319005		1035	hypothetical protein [Arabidopsis thalia	0.980	0.999	0.697	0.0
30678889		1035	uncharacterized protein [Arabidopsis tha	0.980	0.999	0.696	0.0

>gi\|224110616\|ref\|XP_002315579.1\| predicted protein [Populus trichocarpa] gi\|222864619\|gb\|EEF01750.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1570 bits (4066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/1063 (71%), Positives = 890/1063 (83%), Gaps = 43/1063 (4%)

Query: 1    MTHQARRDSFPGQLAGPAT---ADSDLAWPFGKLEGIDSDDIRETAYEVFFTSCRSSPGF 57
            M  Q+RR+SF G L   ++    D+DL+WPFG LEG+D DD+ ETAYEVFFT+CRSSPGF
Sbjct: 1    MAQQSRRESFSGTLTISSSIDPEDNDLSWPFGDLEGLDKDDVSETAYEVFFTACRSSPGF 60

Query: 58   GG-RNAISFYSSHDNNNNNGGGDGGVGGGSGTGSGSPTARVNGGGVVQMTPTSRVKRALG 116
            GG RNAI+FYSSH +  ++G          G G+GSP+ R+ GG VV M+PTSR+KRALG
Sbjct: 61   GGGRNAINFYSSHQHQQHDG---------DGAGTGSPSGRMGGGPVVVMSPTSRIKRALG 111

Query: 117  LKMLKRSPCRRMSSVGASS--NNPTSPGSHAPNNHLHNNSNNNFGHGHGHGGTSPAGNTN 174
            +KMLK+SP RRMS+VG     + P SP    P NH               GGTSPA    
Sbjct: 112  MKMLKKSPTRRMSAVGGGGGGSAPVSPT--GPLNH---------------GGTSPA---M 151

Query: 175  NYSTVPPPSRPRRPLTSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLEL 234
             ++TVP   RPRRPLTSAEIMR QM+VTE SDNRLRKT+MRTLVGQMGRRAETIILPLEL
Sbjct: 152  GFATVPISGRPRRPLTSAEIMRAQMRVTEHSDNRLRKTIMRTLVGQMGRRAETIILPLEL 211

Query: 235  LRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPIDKSNNFAIRLREIVRASETKPI 294
            LRHLKPSEFND  EYHLWQRRQLKILEAGLL HPS+P+DKS+ +AIRLREI+RASETKPI
Sbjct: 212  LRHLKPSEFNDSQEYHLWQRRQLKILEAGLLLHPSIPLDKSSPYAIRLREIIRASETKPI 271

Query: 295  DTGKNSDTMRALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRDETL 354
            DTGKNSDTMR LCNSVVSLSWRSANGTPTDVCHWADGFPLN+HLY++LLQSIFDFRDETL
Sbjct: 272  DTGKNSDTMRTLCNSVVSLSWRSANGTPTDVCHWADGFPLNIHLYVSLLQSIFDFRDETL 331

Query: 355  VLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLA-EL 413
            VLDEVDEL+ELMKKTWSTLGINRPIHN+CF WVLFQQYV+TS  EPDLL A H ML+ E+
Sbjct: 332  VLDEVDELVELMKKTWSTLGINRPIHNLCFAWVLFQQYVLTSQVEPDLLSATHAMLSTEV 391

Query: 414  ANDAKKPDREAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKI 473
            ANDAKKPDREA+YV++LSS+LASMQGWAE+RLL YHD+F RG    IENLLPLAL ASKI
Sbjct: 392  ANDAKKPDREAMYVKLLSSMLASMQGWAERRLLHYHDHFQRGNFVLIENLLPLALSASKI 451

Query: 474  LGEDVSITEG-GLERGDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDL 532
            LGEDV+I EG G E+GDT++V DS+GDRVDHYIR S+KNAF  IIE G+ ++   +  D 
Sbjct: 452  LGEDVTIAEGIGKEKGDTQIV-DSSGDRVDHYIRGSIKNAFAKIIETGSYKSTSLEVKDE 510

Query: 533  GETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGT 592
              + ALLQLAKEAEDLALRERE FSPILK+WHSIAA +AAVTLHQCYGAVLKQYLA   T
Sbjct: 511  A-SEALLQLAKEAEDLALREREVFSPILKKWHSIAASIAAVTLHQCYGAVLKQYLAGVST 569

Query: 593  LKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQE 652
            L N+TV VLQ AGKLEKVLVQM+VEDSAEC+DGGK IVREM+PYEVDS+ILR ++ WI E
Sbjct: 570  LNNETVSVLQSAGKLEKVLVQMLVEDSAECEDGGKTIVREMVPYEVDSVILRLMKKWIGE 629

Query: 653  RINRGKECYLRAKESETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDL 712
            R+ RG+EC  RAK+SETWNPKSK+EP+A SA EL++ AK+ VDDFFEIP+GITDDL++DL
Sbjct: 630  RLKRGQECLNRAKDSETWNPKSKNEPHATSAAELIKIAKEAVDDFFEIPVGITDDLINDL 689

Query: 713  ADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQI 772
            A+G + LF++Y+  V +CG++QSY+PTLPPLTRCN DSKF K+WK+A+PCT+  E + Q 
Sbjct: 690  AEGFENLFKDYSNLVTACGSKQSYVPTLPPLTRCNGDSKFLKMWKRAAPCTINSEYMHQ- 748

Query: 773  NGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRR 832
            +G N+ HHPRPSTSRGTQRLYIRLNTL+YL SH+HSL+K L+L+P+   ++ SR  + R 
Sbjct: 749  HGLNDAHHPRPSTSRGTQRLYIRLNTLYYLQSHLHSLEKNLALAPR---TTASRGYHRRN 805

Query: 833  HTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTL 892
            H NS+SYF+ A  +IQSAC HVSEVAAYRLIFLDSNSVFY++LYV DVANAR++PALR L
Sbjct: 806  HINSSSYFDLALASIQSACHHVSEVAAYRLIFLDSNSVFYDTLYVADVANARIKPALRIL 865

Query: 893  KQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLK 952
            KQNL LL+AILTD+AQ +A++EVMKASFEAFLMVLLAGG SR+FYRSD+ MIEED ++LK
Sbjct: 866  KQNLNLLTAILTDRAQPVAMREVMKASFEAFLMVLLAGGCSRIFYRSDYPMIEEDCENLK 925

Query: 953  RVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSGIGVVGTGQKL 1012
            R FCTCGEGL+ ED V++EAE V+GVI LMG  TEQL+EDF+IL+CE SGIG  G+GQKL
Sbjct: 926  RTFCTCGEGLMNEDAVEKEAEIVEGVIALMGDSTEQLMEDFSILTCEASGIGSAGSGQKL 985

Query: 1013 PMPPTTGRWNRADPNTILRVLCHRNDRAANQFLKKSFQLAKRR 1055
            PMPPTTGRWNRADPNTILRVLCHR+D+AANQFLKK+FQLAKRR
Sbjct: 986  PMPPTTGRWNRADPNTILRVLCHRDDKAANQFLKKTFQLAKRR 1028

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297823135\|ref\|XP_002879450.1\| hypothetical protein ARALYDRAFT_345092 [Arabidopsis lyrata subsp. lyrata] gi\|297325289\|gb\|EFH55709.1\| hypothetical protein ARALYDRAFT_345092 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15226107\|ref\|NP_180900.1\| uncharacterized protein [Arabidopsis thaliana] gi\|2459424\|gb\|AAB80659.1\| unknown protein [Arabidopsis thaliana] gi\|330253738\|gb\|AEC08832.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|26451960\|dbj\|BAC43072.1\| unknown protein [Arabidopsis thaliana] gi\|29029070\|gb\|AAO64914.1\| At2g33420 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224102215\|ref\|XP_002312593.1\| predicted protein [Populus trichocarpa] gi\|222852413\|gb\|EEE89960.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449433231\|ref\|XP_004134401.1\| PREDICTED: uncharacterized protein LOC101210328 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449486765\|ref\|XP_004157395.1\| PREDICTED: uncharacterized LOC101210328 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255575827\|ref\|XP_002528811.1\| conserved hypothetical protein [Ricinus communis] gi\|223531723\|gb\|EEF33545.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|62319005\|dbj\|BAD94120.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30678889\|ref\|NP_171941.2\| uncharacterized protein [Arabidopsis thaliana] gi\|1903347\|gb\|AAB70427.1\| EST gb\|ATTS5672 comes from this gene [Arabidopsis thaliana] gi\|332189580\|gb\|AEE27701.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1055
TAIR\|locus:2050997		1039	AT2G33420 "AT2G33420" [Arabido	0.818	0.830	0.744	0.0
TAIR\|locus:2018339		1035	AT1G04470 "AT1G04470" [Arabido	0.885	0.902	0.684	0.0
TAIR\|locus:2043515		987	AT2G25800 "AT2G25800" [Arabido	0.845	0.903	0.393	1.6e-184
TAIR\|locus:2061619		952	AT2G20010 "AT2G20010" [Arabido	0.745	0.826	0.389	2e-155
TAIR\|locus:2169424		1101	AT5G06970 "AT5G06970" [Arabido	0.779	0.746	0.302	1.2e-100
TAIR\|locus:2139707		1117	AT4G11670 "AT4G11670" [Arabido	0.727	0.687	0.239	1e-40

TAIR\|locus:2050997 AT2G33420 "AT2G33420" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3401 (1202.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 647/869 (74%), Positives = 747/869 (85%)

Query:   189 LTSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHE 248
             LTSAEIMRQQMKVTEQSD+RLRKTL+RTLVGQ GRRAETIILPLELLRHLK SEF D HE
Sbjct:   175 LTSAEIMRQQMKVTEQSDSRLRKTLLRTLVGQTGRRAETIILPLELLRHLKTSEFGDIHE 234

Query:   249 YHLWQRRQLKILEAGLLQHPSVPIDKSNNFAIRLREIVRASETKPIDTGKNSDTMRALCN 308
             Y LWQRRQLK+LEAGLL HPS+P+DK+NNFA+RLRE+VR SETKPIDT K SDTMR L N
Sbjct:   235 YQLWQRRQLKVLEAGLLLHPSIPLDKTNNFAMRLREVVRQSETKPIDTSKTSDTMRTLTN 294

Query:   309 SVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRXXXXXXXXXXXXXXXMKK 368
              VVSLSWR  NG PTDVCHWADG+PLN+HLY+ALLQSIFD R               MKK
Sbjct:   295 VVVSLSWRGTNGNPTDVCHWADGYPLNIHLYVALLQSIFDVRDETLVLDEIDELLELMKK 354

Query:   369 TWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVR 428
             TWSTLGI RPIHN+CFTWVLF QYVVTS  EPDLL A+H MLAE+ANDAKK DREA+YV+
Sbjct:   355 TWSTLGITRPIHNLCFTWVLFHQYVVTSQMEPDLLGASHAMLAEVANDAKKLDREALYVK 414

Query:   429 MLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENXXXXXXXXSKILGEDVSITEG-GLER 487
             +L+S LASMQGW EKRLL YHDYF RG VG IEN        S+ILGEDV+I++G G E+
Sbjct:   415 LLNSTLASMQGWTEKRLLSYHDYFQRGNVGLIENLLPLALSSSRILGEDVTISQGKGQEK 474

Query:   488 GDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAED 547
             GD K+V D +GDRVD+YIRSS+KNAF+ +IEN   +   +D  +    G LLQLAKE E+
Sbjct:   475 GDVKLV-DHSGDRVDYYIRSSIKNAFSKVIENTKAKIAATDEGEEA-AGTLLQLAKETEE 532

Query:   548 LALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKL 607
             LALRERECFSPILKRWHS+AAGVA+V+LHQCYG++L QYLA    +  DTV+VLQ AGKL
Sbjct:   533 LALRERECFSPILKRWHSVAAGVASVSLHQCYGSILMQYLAGRSFISRDTVEVLQTAGKL 592

Query:   608 EKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKES 667
             EKVLVQMV EDS EC+DGGKG+VREM+PYEVDSIILR LR W++E++   +EC  RAKE+
Sbjct:   593 EKVLVQMVAEDSEECEDGGKGLVREMVPYEVDSIILRLLRQWVEEKLKAVQECLFRAKET 652

Query:   668 ETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV 727
             ETWNPKSKSEPYAQSA ELM+ AKDT+D+FFEIPIGIT+DLVHD+A+GL+QLF+EYTTFV
Sbjct:   653 ETWNPKSKSEPYAQSAGELMKLAKDTIDEFFEIPIGITEDLVHDIAEGLEQLFQEYTTFV 712

Query:   728 ASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGS-NEGHHPRPSTS 786
             ASCGARQSY+PTLPPLTRCNRDS+F KLWK+A+PCT + ED++      ++GHHPRPSTS
Sbjct:   713 ASCGARQSYIPTLPPLTRCNRDSRFVKLWKRATPCTTSNEDLKYTTSVISDGHHPRPSTS 772

Query:   787 RGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNA 846
             RGTQRLYIRLNTLH+L SHIHSL+KTLSL+P+I+P++R R+  HR + NS+SYF+     
Sbjct:   773 RGTQRLYIRLNTLHFLSSHIHSLNKTLSLNPRILPATRKRY-RHRNN-NSSSYFDFTYAG 830

Query:   847 IQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDK 906
             I+SACQHVSEVAAYRLIFLDSNSV YESLYVG+VANAR+RPALR +KQNLTL+SAIL D+
Sbjct:   831 IESACQHVSEVAAYRLIFLDSNSVLYESLYVGEVANARIRPALRIMKQNLTLMSAILADR 890

Query:   907 AQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVED 966
             AQ+LA++EVMK+SFEAFLMVLLAGG SRVFYRSDH +IEEDF++LKRVFCTCGEGLI E+
Sbjct:   891 AQSLAMREVMKSSFEAFLMVLLAGGYSRVFYRSDHSIIEEDFENLKRVFCTCGEGLIPEE 950

Query:   967 VVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSGIGVVGTGQKLPMPPTTGRWNRADP 1026
             VVDREAETV+GVI LM Q TEQL+EDF+I++CETSG+G+VG+GQKLPMPPTTGRWNR+DP
Sbjct:   951 VVDREAETVEGVIQLMSQPTEQLMEDFSIVTCETSGMGMVGSGQKLPMPPTTGRWNRSDP 1010

Query:  1027 NTILRVLCHRNDRAANQFLKKSFQLAKRR 1055
             NTILRVLCHRNDR ANQFLKKSFQL KRR
Sbjct:  1011 NTILRVLCHRNDRVANQFLKKSFQLPKRR 1039

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009860 "pollen tube growth" evidence=RCA

TAIR\|locus:2018339 AT1G04470 "AT1G04470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043515 AT2G25800 "AT2G25800" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061619 AT2G20010 "AT2G20010" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2169424 AT5G06970 "AT5G06970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139707 AT4G11670 "AT4G11670" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_X000132	hypothetical protein (1028 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1055
pfam05664		677	pfam05664, DUF810, Protein of unknown function (DU	0.0

>gnl\|CDD\|218680 pfam05664, DUF810, Protein of unknown function (DUF810)	Back alignment and domain information

 Score =  782 bits (2021), Expect = 0.0
 Identities = 342/798 (42%), Positives = 451/798 (56%), Gaps = 140/798 (17%)

Query: 33  GIDSDDIRETAYEVFFTSCRSSPGFGGRNAISFYSSHDNNNNNGGGDGGVGGGSGTGSGS 92
           G+  DD+RETAYE+   +CRSS        I       +                     
Sbjct: 1   GLSDDDLRETAYEILVAACRSSGP-----LIYPSKEKKSEK------------------- 36

Query: 93  PTARVNGGGVVQMTPTSRVKRALGLKMLKRSPCRRMSSVGASSNNPTSPGSHAPNNHLHN 152
                           SRVK+ALGLK  K                               
Sbjct: 37  ----------------SRVKKALGLKRSKSG----------------------------- 51

Query: 153 NSNNNFGHGHGHGGTSPAGNTNNYSTVPPPSRPRRPLTSAEIMRQQMKVTEQSDNRLRKT 212
                                   S+   P R RRP+T  EIMR QM+++EQ D+R+R+ 
Sbjct: 52  ------------------------SSSSQPQRSRRPVTQLEIMRIQMRISEQMDSRIRRG 87

Query: 213 LMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPI 272
           L+R  VGQ+GRR E+I+LPLELL+ LK SEF D  EY  WQ+RQLK+LE GL+ HP VP+
Sbjct: 88  LLRAAVGQVGRREESIVLPLELLQQLKASEFPDPKEYEAWQKRQLKLLEEGLILHPCVPL 147

Query: 273 DKSNNFAIRLREIVRA-----SETKPIDTGKNSDTMRALCNSVVSLSWR-SANGTPTDVC 326
           DKSN  A RLREI+RA     S  +P DT K S+ +R+L + V+SL+WR S  G   D C
Sbjct: 148 DKSNRSAQRLREIIRAIDESDSLPRPTDTNKRSEILRSLRSVVMSLAWRPSRGGMTGDSC 207

Query: 327 HWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTW 386
           HWADG+PLN+ LY  LL+++FD  D+  + +EVDE+LEL+KKTWS LGI   IHNVC  W
Sbjct: 208 HWADGYPLNIRLYEKLLEAVFDQVDDGSLAEEVDEILELLKKTWSILGITETIHNVCLAW 267

Query: 387 VLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVR------------MLSSVL 434
            LF+QYVVT   EPDLL AA   LAE+A DAK+  +EA+Y++            +L+S L
Sbjct: 268 ALFRQYVVT--GEPDLLAAAIAQLAEVALDAKRGTKEALYLKSLARSVTTIHSPLLASAL 325

Query: 435 ASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVSITEGGLERGDTKVVM 494
           +S+ GW+EKRLL YHD F  G +G +E+++ +A  A++ILGED+S          T    
Sbjct: 326 SSILGWSEKRLLDYHDTFDEGNIGVMEDIVSIAYSAARILGEDISAEL--RRARKT---- 379

Query: 495 DSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERE 554
               DR+D YIRSS+KNAF    ++  +   D+  N L     L QLA+E  DLA +E E
Sbjct: 380 -CARDRIDEYIRSSLKNAFA---KDAKVADGDATTNPL---HVLAQLAEETADLAKKELE 432

Query: 555 CFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQM 614
            FSPILKRWH  AAGVAA TLH+CYG  LKQ+LA    L  D V+VL  A KLEK LVQ+
Sbjct: 433 RFSPILKRWHPQAAGVAAATLHKCYGNDLKQFLAGGTELTEDAVEVLWAADKLEKALVQI 492

Query: 615 VVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKESETWNPKS 674
               + +CDDGGK ++REM PYEV+S+I   ++ WI E+I+R KE   RA E ETW PKS
Sbjct: 493 A---AVDCDDGGKAVIREMEPYEVESVIGNLVKTWINEKIDRLKEWVDRAIEQETWKPKS 549

Query: 675 KSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV-ASCGAR 733
             + YA SAVE++R  ++T+D FF +PI     L+  L +G+   F++YT+ V +S G+R
Sbjct: 550 NDQRYAPSAVEVLRIVEETLDGFFGLPIPAHVSLLRALTEGIDAAFQKYTSKVVSSLGSR 609

Query: 734 QSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLY 793
           +  +P LPPLTRC + S    LWKK    +   ++ +  N              G   L 
Sbjct: 610 EDLVPPLPPLTRCKKASGIVDLWKKKFKPSSPPDERKSQNI----------DELGVPALC 659

Query: 794 IRLNTLHYLVSHIHSLDK 811
           +RLNTLHYL S + SL+K
Sbjct: 660 VRLNTLHYLRSQLSSLEK 677

This family consists of several plant proteins of unknown function. Length = 677

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1055
PF05664		677	DUF810: Protein of unknown function (DUF810); Inte	100.0
PF10540		137	Membr_traf_MHD: Munc13 (mammalian uncoordinated) h	98.91
KOG1328		1103	consensus Synaptic vesicle protein BAIAP3, involve	98.5
PF06046		566	Sec6: Exocyst complex component Sec6; InterPro: IP	98.3
KOG1011		1283	consensus Neurotransmitter release regulator, UNC-	97.64
KOG2180		793	consensus Late Golgi protein sorting complex, subu	94.84
KOG2286		667	consensus Exocyst complex subunit SEC6 [Intracellu	93.95
PF04437		494	RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00	92.47
PF04091		311	Sec15: Exocyst complex subunit Sec15-like ; InterP	89.12

>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function	Back alignment and domain information

Probab=100.00  E-value=3.8e-214  Score=1856.51  Aligned_cols=657  Identities=55%  Similarity=0.921  Sum_probs=616.4

Q ss_pred             CCChhhHHHHHHHHhhhhccCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccchhHHH
Q 042759           33 GIDSDDIRETAYEVFFTSCRSSPGFGGRNAISFYSSHDNNNNNGGGDGGVGGGSGTGSGSPTARVNGGGVVQMTPTSRVK  112 (1055)
Q Consensus        33 ~l~~~dlretayeif~~acrs~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~srvk  112 (1055)
                      +||+||||||||||||||||+|      ++++|++....                                  ...||||
T Consensus         1 ~ls~~dlRetAYEi~~a~~~~s------~~~~~~~~~~~----------------------------------~~~s~~k   40 (677)
T PF05664_consen    1 GLSDDDLRETAYEILLASCRSS------GGLIYFSQSKK----------------------------------KEKSRVK   40 (677)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcc------CCCccCccccc----------------------------------cchhHHH
Confidence            6999999999999999999988      45677663211                                  1138999


Q ss_pred             HhhcccccccCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccHH
Q 042759          113 RALGLKMLKRSPCRRMSSVGASSNNPTSPGSHAPNNHLHNNSNNNFGHGHGHGGTSPAGNTNNYSTVPPPSRPRRPLTSA  192 (1055)
Q Consensus       113 ~alglk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrp~t~~  192 (1055)
                      ||||||++++..            +                                         +++|+|+|||+|++
T Consensus        41 ~~lgl~~~~~~~------------~-----------------------------------------~~~~~~~~~~~~~~   67 (677)
T PF05664_consen   41 KALGLKSSKSGS------------S-----------------------------------------VSSPGRPRRPMTSA   67 (677)
T ss_pred             HHhcCCCCCCCC------------C-----------------------------------------CCCCCCCCCcchHH
Confidence            999999987621            1                                         12344889999999


Q ss_pred             HHHHHHhhchhhhhHHHHHHHHHHHHHhhhcccccccccHHHhhccCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCccC
Q 042759          193 EIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPI  272 (1055)
Q Consensus       193 eimR~QM~VsE~~D~R~Rr~Llr~~vgq~Grr~etivlPLELL~~lk~SdF~d~~eY~~Wq~RqlkvLEaGLl~hP~vpl  272 (1055)
                      ||||+|||||||+|+||||+|||+++||+|||+|+|+|||||||+||+|||+|++||++||||||||||||||+||++|+
T Consensus        68 e~~r~qm~vse~~d~r~r~~l~~~~~~~~g~r~e~~~lpLeLl~~~~~sdF~d~~ey~~WqkRql~~Le~gL~~hp~~~l  147 (677)
T PF05664_consen   68 EIMRVQMRVSEQMDARIRRALLRAAAGQVGRRAESIVLPLELLQQLKPSDFSDEKEYEQWQKRQLKVLEAGLLNHPSVPL  147 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhCCHhhCCCHHHHHHHHHHHHHHHHHHHHhCcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHh-----cccCCCCCCCchHHHHHHHHHHhhhhcc-CCCCCCCCccccCCCCCchHHHHHHHHhhc
Q 042759          273 DKSNNFAIRLREIVRA-----SETKPIDTGKNSDTMRALCNSVVSLSWR-SANGTPTDVCHWADGFPLNVHLYIALLQSI  346 (1055)
Q Consensus       273 dks~~~a~rLR~ii~~-----a~~~~~dtgk~se~mr~L~~av~sLA~R-s~~G~~~e~CHWADGypLNvrLYe~LL~ai  346 (1055)
                      |++|.+|++||++|+.     ++.+|++||||+|+||+||++|++|||| +.+|.++|+||||||||||+||||+||++|
T Consensus       148 ~~s~~~a~~lr~~~~~~~~~~~~~~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~  227 (677)
T PF05664_consen  148 DKSNASAQRLRQIIAKIREDEAEDKPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSV  227 (677)
T ss_pred             cccchhHHHHHHHHHhcccccccCCcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHH
Confidence            9999999999999999     9999999999999999999999999999 557789999999999999999999999999


Q ss_pred             cccCCCcchhhhHHHHHHHHHhhhhccCCchhhhHHHHHHHhHHhhhhcCCChhHHHHHHHHHHHHHHHhhCCCCcchhH
Q 042759          347 FDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIY  426 (1055)
Q Consensus       347 FD~~dEg~vidEvDElLELiKkTW~iLGI~q~lHn~CfaWVLF~QyV~Tgq~E~dLL~aa~~~L~eVa~Dak~~~rd~~y  426 (1055)
                      ||++|||+||||||||||+|||||++||||||+||+||+||||||||+||  |+|||+||++||+||++|+|+.++|+.|
T Consensus       228 FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tg--e~~LL~~a~~~L~ev~~d~~~~~~~~~y  305 (677)
T PF05664_consen  228 FDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATG--EPDLLKAAIQQLQEVAKDAKRATKDPLY  305 (677)
T ss_pred             hcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhccccccchhh
Confidence            99999999999999999999999999999999999999999999999999  9999999999999999999977999999


Q ss_pred             HH------------HHHHHHHhHHHHHHHHhhhhHhhhcCCcchhhhhHHhHHHHHhhhhccccccccCCCCCCCccccc
Q 042759          427 VR------------MLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVSITEGGLERGDTKVVM  494 (1055)
Q Consensus       427 ~k------------~L~S~L~sI~~W~ekrLldYH~~F~~g~~~~me~llsla~~aakiL~ed~s~~~~~~~~~~~~~~~  494 (1055)
                      ++            +|+|+|++|++|+||||+|||+||++++++.||++++|++.++||++||++.+.    +. ...  
T Consensus       306 ~~sl~~~~~~~~l~ll~s~L~si~~W~ekrL~dYH~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~----~~-~~~--  378 (677)
T PF05664_consen  306 LKSLRCSVETSDLSLLSSVLSSIQGWAEKRLLDYHDHFSEGNIGVMEGLLSLAVSAAKILGEDVSREY----RR-KRS--  378 (677)
T ss_pred             hhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhhchhHHH----Hh-hhc--
Confidence            99            999999999999999999999999999998999999999999999999988553    22 111  


Q ss_pred             ccccchhhHHHHhhHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccchhHHHHHH
Q 042759          495 DSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVT  574 (1055)
Q Consensus       495 d~a~~rId~YIrsSir~AF~~~~e~~~~~~~~~~~~~~~~~~~L~~LA~e~~~LA~~E~~~FSPiLkrWhP~A~~VAa~t  574 (1055)
                      .++++|||+|||||||+||+|+.+..+.+.      +.++.|+|++||+||++||++|+++|||||+||||+|++|||+|
T Consensus       379 ~~~~~~ie~YIrsSi~~Af~~~~~~~~~~~------~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~  452 (677)
T PF05664_consen  379 KVARSRIESYIRSSIKAAFARMASSVDSRS------DSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAAT  452 (677)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhhhhhhcc------cccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHH
Confidence            278999999999999999999988877663      78899999999999999999999999999999999999999999


Q ss_pred             hHHhHHHHHHHHHhhcCCCChhHHHHHHHhhhHHHHHHHHhhhcccccCCCCcccccccCcchhhHHhHHHHHHHHHHHH
Q 042759          575 LHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERI  654 (1055)
Q Consensus       575 LH~cYG~~LKqfL~g~s~LT~d~v~VL~AAd~LEk~Lvq~~vEdsvd~ddggksvirem~PYeve~~i~~Lv~~Wi~~ql  654 (1055)
                      ||.|||++|||||+++++||+|+++||+||++|||+||||+   ++|||||||+++|+|+||++|+++++||++||++|+
T Consensus       453 LH~~Yg~~Lk~~L~~~~~LT~d~v~VL~aA~~LEk~Lvq~~---~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~  529 (677)
T PF05664_consen  453 LHSCYGNELKQFLSGVTHLTPDVVEVLQAADKLEKALVQMV---SVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQL  529 (677)
T ss_pred             HHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHH---HhhccccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999   788999999999999999999999999999999999


Q ss_pred             hhhhhHHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-hccCCC
Q 042759          655 NRGKECYLRAKESETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV-ASCGAR  733 (1055)
Q Consensus       655 ~~l~ewv~Ra~q~E~W~P~S~~e~~A~SaVEvlRiveETvD~FF~lpvp~~~~ll~~L~~Gld~~lq~Y~~~v-~~cGsk  733 (1055)
                      ++++|||+||++||+|+|+|++|+||+|+||||||++||||+||+||+||+++++++|++|||++||+|+++| ++||+|
T Consensus       530 ~~l~ewv~ra~~qE~W~P~S~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk  609 (677)
T PF05664_consen  530 ERLNEWVDRAIKQEKWNPRSKEERHSPSVVEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKVEQSCGSK  609 (677)
T ss_pred             HHHHHHHHHHHhhccCCcCCCCCCCcchHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             CcccCCCCCCcccccCcchhhhhhhcCCCCC-cccccccccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhhhhh
Q 042759          734 QSYLPTLPPLTRCNRDSKFSKLWKKASPCTV-AVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDK  811 (1055)
Q Consensus       734 ~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~-p~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~LEk  811 (1055)
                      ++||||+|||||||++++|+++|||+.++.. +.+....           ..+++++|+|||||||||||++||++|||
T Consensus       610 ~~liP~~P~LTR~~~~sk~~~~~Kk~~~~~~~~~~~~~~-----------~~~~~~~~~lcVrLNtL~yil~qL~~LEK  677 (677)
T PF05664_consen  610 QSLIPPLPPLTRCKKDSKFKKLWKKKWKSSTNPDERFSS-----------KINSQFTPRLCVRLNTLEYILSQLDKLEK  677 (677)
T ss_pred             cccCCCCchhhhhhhhhhHHHHHHHHhcCcccccccccc-----------CcccCccCceeeeecHHHHHHHHHHhhcC
Confidence            9999999999999999999999999965544 4433311           13499999999999999999999999997

>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p	Back alignment and domain information

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]	Back alignment and domain information

>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex	Back alignment and domain information

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases	Back alignment and domain information

>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1055
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3swh_A		341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	1e-09
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 68.3 bits (166), Expect = 9e-12
 Identities = 105/667 (15%), Positives = 204/667 (30%), Gaps = 171/667 (25%)

Query: 327 HWADGFPLNVHLYIALL--QSIFDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCF 384
            + D   +    ++     + + D     L  +E+D ++        TL +        F
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--------F 68

Query: 385 TWVL-------FQQYVVTSLSEPDLLCAAHTMLAE-LANDAKKPDREA-IYVRMLSSVLA 435
            W L        Q++V   L   +     +  L   +  + ++P     +Y+        
Sbjct: 69  -WTLLSKQEEMVQKFVEEVL-RIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRD---- 117

Query: 436 SMQGWAEKRLLRYHDYFHRGTVGQIENLLPL--ALLASKILGEDVSITEGGLERGDT--- 490
                   RL   +  F +  V +++  L L  ALL  +   ++V I +G L  G T   
Sbjct: 118 --------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLI-DGVLGSGKTWVA 167

Query: 491 -KVVMDST-----GDRVDHYIRSSVKNAFTNIIENGN--LRTEDSDGNDLGETGALLQLA 542
             V +          ++  ++     N+   ++E     L   D +     +  + ++L 
Sbjct: 168 LDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 543 KEAEDLALRERECFSPILKR--------WHSIAAGVAAVTLHQCYGAVLKQYLAETGTLK 594
             +    LR R   S   +          ++ A    A  L  C      + L  T   +
Sbjct: 227 IHSIQAELR-RLLKSKPYENCLLVLLNVQNAKA--WNAFNL-SC------KILLTT---R 273

Query: 595 NDTV-DVLQRAGKLEKVLVQMVVEDSAECDDG----GK--GIVREMIPYEVDSIILRQLR 647
              V D L         +       +   D+      K      + +P EV +   R+L 
Sbjct: 274 FKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 648 LWIQERINRGKECYLRAKESETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEI--PIGIT 705
           + I E I  G           TW      + +     + +      ++    +  P    
Sbjct: 332 I-IAESIRDGLA---------TW------DNWKHVNCDKLTT---IIESSLNVLEP---- 368

Query: 706 DDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVA 765
                      +++F   + F  S     +++PT             S +W         
Sbjct: 369 --------AEYRKMFDRLSVFPPS-----AHIPT----------ILLSLIWFDVIK---- 401

Query: 766 VEDVQQINGSNEGHHPRPS-TSRGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPS-- 822
             DV  +   N+ H  + S   +  +   I + ++ YL   +   ++  +L   IV    
Sbjct: 402 -SDVMVV--VNKLH--KYSLVEKQPKESTISIPSI-YLELKVKLENEY-ALHRSIVDHYN 454

Query: 823 -SRSRFANHRRHTNSNSYF-----EHATNAIQSACQHVSEVAAYRLIFLDSNSVFYES-- 874
             ++  ++       + YF      H  N      +H   +  +R++FLD    F E   
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-----EHPERMTLFRMVFLDFR--FLEQKI 507

Query: 875 LYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSR 934
            +     NA     L TL Q L      + D        E +  +   FL          
Sbjct: 508 RHDSTAWNAS-GSILNTL-QQLKFYKPYICDNDPKY---ERLVNAILDFLP-----KIEE 557

Query: 935 VFYRSDH 941
               S +
Sbjct: 558 NLICSKY 564

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Length = 341	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1055
3swh_A		341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	99.94
2fji_1		399	Exocyst complex component SEC6; exocytosis, tandem	98.41

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}	Back alignment and structure

Probab=99.94  E-value=1.1e-25  Score=247.94  Aligned_cols=289  Identities=15%  Similarity=0.245  Sum_probs=204.2

Q ss_pred             HHhHHHHHHHHHHHHhhhhhHHHhhhhccccCCCC---CCCCCchhHHHHHHHHHHHHHhhhcCCCCCCh---hHHHHHH
Q 042759          640 SIILRQLRLWIQERINRGKECYLRAKESETWNPKS---KSEPYAQSAVELMRHAKDTVDDFFEIPIGITD---DLVHDLA  713 (1055)
Q Consensus       640 ~~i~~Lv~~Wi~~ql~~l~ewv~Ra~q~E~W~P~S---~~e~~A~SaVEvlRiveETvD~FF~lpvp~~~---~ll~~L~  713 (1055)
                      ....+.|.+|+++.-++..+||++|++.++|.|..   .+.+|..|+|++|+++.++++.+.+|.-|-..   .....|+
T Consensus         9 ~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~l~   88 (341)
T 3swh_A            9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFA   88 (341)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999998875   67899999999999999999999999988664   4566788


Q ss_pred             HHHHHHHHHHHHHH-hccCCCCcccCCCCCCcccccCcchhhhhhhcCCCCCcccccccccCCCCCCCCCCCCcccccch
Q 042759          714 DGLQQLFREYTTFV-ASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRL  792 (1055)
Q Consensus       714 ~Gld~~lq~Y~~~v-~~cGsk~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~~t~~L  792 (1055)
                      .-|-+++-.|+..+ ...                      ...                +.            ..++..+
T Consensus        89 ~~i~~~~~~Y~~~l~~~~----------------------~~~----------------~~------------~e~~~~~  118 (341)
T 3swh_A           89 KTISNVLLQYADIVSKDF----------------------ASY----------------CS------------KEKEKVP  118 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------------------HHH----------------CC------------TTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----------------------Hhh----------------hh------------hhcccch
Confidence            89999999998887 332                      000                00            0013358


Q ss_pred             hhhhhhHHHHHHhHhhhhhhcccCCCccCCccccccccccCCCCCchhHHHHHHHHHHHHHHHHhhceeeeeeccch-hh
Q 042759          793 YIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNS-VF  871 (1055)
Q Consensus       793 cVRLNTL~yi~~~l~~LEk~i~~~~~~~~S~~~~~~~~~~~~~~~~~Fd~ar~a~~~ai~~l~E~~AyrlVF~Dlr~-~f  871 (1055)
                      ||-||-++|++.+|+.+-+.+  .|....+            ......+..+..++..+++++...+-|+. -+++. ++
T Consensus       119 Cv~lNNie~lR~~L~~l~~~l--~~~~l~~------------~~~~~~~~lq~~l~~vl~~l~~~~~~~~~-~~i~~~v~  183 (341)
T 3swh_A          119 CILMNNTQQLRVQLEKMFEAM--GGKELDA------------EASGTLKELQVKLNNVLDELSHVFATSFQ-PHIEECVR  183 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--TTTTSCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHH
T ss_pred             hhhcccHHHHHHHHHHHHHhc--chhhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            999999999999999998866  2221111            11224444555555555555543333321 00000 00


Q ss_pred             --Hhhhc--c--Ccc-----------ccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH-------
Q 042759          872 --YESLY--V--GDV-----------ANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVL-------  927 (1055)
Q Consensus       872 --~d~LY--~--g~V-----------a~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VL-------  927 (1055)
                        -..|+  .  |.+           .+.+|+|+++.||++|..+.+.+++.+.++++++||++++++|..++       
T Consensus       184 ~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~  263 (341)
T 3swh_A          184 QMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFS  263 (341)
T ss_dssp             HHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred             HHHHHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence              00111  0  111           25799999999999999999999999999999999999999999998       


Q ss_pred             -----HcCCCCcccccchhhhHHHHHHHHHHHHhhCCCCCChhHHHHH--HHHhHHHHHhhhcccHHHHHHHHH
Q 042759          928 -----LAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDR--EAETVDGVIGLMGQQTEQLIEDFT  994 (1055)
Q Consensus       928 -----LaGGPsRaF~~~D~~miEEDf~~LK~lF~a~GeGL~p~evVek--ea~~v~~Vl~Lm~~~Te~LIe~f~  994 (1055)
                           ++||+.|.|++.++++++++|+.||++|+|+|+|| |.+.+|+  +...++.+|.|+.++|++||+.|-
T Consensus       264 ~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL-~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~  336 (341)
T 3swh_A          264 KLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGL-KKTFLEKSPDLQSLRYALSLYTQATDLLIKTFV  336 (341)
T ss_dssp             SSSCC----------CTTHHHHHHHHHHHHHHHHGGGTSC-CHHHHHTCHHHHHHHHHHHHC------------
T ss_pred             hhHhhhcccccCCCCHHHHHHHHHHHHHHHHHhccCCCCC-CHHHHccChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence                 79999999999999999999999999999999999 9999997  688999999999999999999884

PyMOL of 3swh

>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00