Citrus Sinensis ID: 042780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
DNNNGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEccccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHcccEEEEEcccHHHHHHHHHHHHHcccccEEEEEccccccEEEEEccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
DNNNGDVLVQYVVLRRDlidawplgsvvtqgcHASVSAiwshkddphtlqycspqninsMHKVTLEVKGETQIVNLSEKLNAGGIAhklwieqpeniptclatkpypkstVSLVFKKLKLCK
Flexible Loop (DISEMBL)
DNNNGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWieqpeniptclatkpypkstvslvfkklklck
Low Complexity Region (SEG)
DNNNGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK
Disordered region (IsUnstruct)
*****DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLK***
Disordered Region (DISOPRED)
****GDV*VQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK
Disordered Region (DISEMBL)
DNNNGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK
Disordered Region (DISPRO)
****GDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
DNNNGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q3SZ85	140	Putative peptidyl-tRNA hy	yes	no	0.942	0.821	0.5	2e-23
Q6GMV3	140	Putative peptidyl-tRNA hy	yes	no	0.942	0.821	0.491	1e-22
D3Z4S3	140	Putative peptidyl-tRNA hy	yes	no	0.942	0.821	0.483	4e-22
Q54ZD0	210	Probable peptidyl-tRNA hy	yes	no	0.868	0.504	0.316	0.0005

>sp|Q3SZ85|PTRD1_BOVIN Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus GN=PTRHD1 PE=2 SV=2

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 5/120 (4%)

Query: 6   DVLVQYVVLRRDLID---AWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHK 62
            +LVQY+VLR+DL     +WP G+VV Q CHA+ +A+  H+D PHT  Y   + +  M K
Sbjct: 23  QILVQYLVLRKDLTQPPFSWPAGAVVAQACHAATAALHLHRDHPHTAAYL--RELERMRK 80

Query: 63  VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           V LE   ET +  L+E L    I HKLW+EQPENIPTC+A +PYPK  VS   KK +L K
Sbjct: 81  VVLEAPDETTLKLLAETLQQKNIDHKLWMEQPENIPTCIALRPYPKEEVSQYLKKFRLFK 140

Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q6GMV3|PTRD1_HUMAN Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sapiens GN=PTRHD1 PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 6   DVLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHK 62
            VLVQY+VLR+DL  A   WP G++V Q CHA+ +A+ +H+D PHT  Y   Q +  M K
Sbjct: 23  QVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYL--QELGRMRK 80

Query: 63  VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           V LE   ET +  L+E L    I H LW+EQPENI TC+A +PYPK  V    KK +L K
Sbjct: 81  VVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRLFK 140

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|D3Z4S3|PTRD1_MOUSE Putative peptidyl-tRNA hydrolase PTRHD1 OS=Mus musculus GN=Ptrhd1 PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 6   DVLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHK 62
            +LVQY+VLR+DL  A   WP G++V Q CHA+ +A+  H+D PHT  Y   + +  M K
Sbjct: 23  QILVQYLVLRKDLSQAPFSWPTGALVAQACHAATAALHLHRDHPHTAAYL--RELGRMRK 80

Query: 63  VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           V LE   ET +  L+E L    I H LW+EQPENI TC+A +PYPK  VS   KK +L K
Sbjct: 81  VVLEAADETTLKELAETLQQKNIDHTLWLEQPENIATCIALRPYPKEEVSQYLKKFRLFK 140

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q54ZD0|PTH2_DICDI Probable peptidyl-tRNA hydrolase 2 OS=Dictyostelium discoideum GN=pth2 PE=3 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 11/117 (9%)

Query: 10  QYVVLRRDLIDAWPLGSVVTQGCHASVSAIW-SHKDDPHTLQYCSPQNINSMHKVTLEVK 68
           Q +V+R DL      G ++ Q CHAS+ A   + KD    L+    +N     K+TL+  
Sbjct: 98  QVLVIRTDL--GMTKGKIIAQCCHASLGARQKALKDSKKVLR--QWENFGCA-KITLKAN 152

Query: 69  GETQIVNLSEKLNAGGIAHKLWIEQ-----PENIPTCLATKPYPKSTVSLVFKKLKL 120
            + ++V+L  K    G+   L ++      P    T LA  P PK  V  V K LKL
Sbjct: 153 SKEELVDLRNKAKELGVVSYLVLDSGHTQIPSGSATVLAVGPAPKEAVDAVTKHLKL 209

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224105759	140	predicted protein [Populus trichocarpa]	0.983	0.857	0.883	7e-58
255561474	135	conserved hypothetical protein [Ricinus	0.959	0.866	0.880	5e-57
225429752	197	PREDICTED: putative peptidyl-tRNA hydrol	0.975	0.604	0.831	4e-55
255548576	186	conserved hypothetical protein [Ricinus	0.959	0.629	0.846	6e-55
15238224	200	Peptidyl-tRNA hydrolase II (PTH2) family	0.959	0.585	0.846	2e-54
297811175	197	protein tyrosine phosphatase [Arabidopsi	0.959	0.593	0.837	4e-54
449441996	192	PREDICTED: putative peptidyl-tRNA hydrol	0.967	0.614	0.847	2e-53
356507829	143	PREDICTED: putative peptidyl-tRNA hydrol	0.975	0.832	0.840	2e-53
356515539	167	PREDICTED: putative peptidyl-tRNA hydrol	0.991	0.724	0.826	7e-53
449499288	192	PREDICTED: LOW QUALITY PROTEIN: putative	0.967	0.614	0.838	7e-53

>gi|224105759|ref|XP_002333769.1| predicted protein [Populus trichocarpa] gi|224142079|ref|XP_002324386.1| predicted protein [Populus trichocarpa] gi|222838441|gb|EEE76806.1| predicted protein [Populus trichocarpa] gi|222865820|gb|EEF02951.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query: 3   NNGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHK 62
           N+ +VLVQYVVLRRDLID WP+GSVVTQGCHASVSAIWSHK+DPHTLQYCSP+NI+SMHK
Sbjct: 21  NSDEVLVQYVVLRRDLIDTWPMGSVVTQGCHASVSAIWSHKEDPHTLQYCSPENIDSMHK 80

Query: 63  VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           VTLEVKGE QI+NLSEKL AGGIAHKLWIEQPENIPTCLATKPYPKS V+L FKKLKLCK
Sbjct: 81  VTLEVKGEPQILNLSEKLKAGGIAHKLWIEQPENIPTCLATKPYPKSVVALFFKKLKLCK 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561474|ref|XP_002521747.1| conserved hypothetical protein [Ricinus communis] gi|223538960|gb|EEF40557.1| conserved hypothetical protein [Ricinus communis]

 Score =  224 bits (571), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/117 (88%), Positives = 112/117 (95%)

Query: 6   DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
           DVLVQYVVLRRDLIDAWP+GSVVTQGCHASVSAIW +KDDPHTLQYCSP+NI+SMHKVTL
Sbjct: 19  DVLVQYVVLRRDLIDAWPMGSVVTQGCHASVSAIWGNKDDPHTLQYCSPENIDSMHKVTL 78

Query: 66  EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           EVKGE Q++NL+EKL AGGI HKLWIEQPENIPTCLATKPYPKSTV+L FKKLKLC+
Sbjct: 79  EVKGEVQMLNLAEKLTAGGIVHKLWIEQPENIPTCLATKPYPKSTVALFFKKLKLCR 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429752|ref|XP_002280461.1| PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Vitis vinifera] gi|296081751|emb|CBI20756.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 110/119 (92%)

Query: 4   NGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
           N D+LVQYVVLRRDLI+ WPLGS+VTQGCHASV AIW++KDDPHT++YCSP+NI+SMHKV
Sbjct: 78  NPDILVQYVVLRRDLIEKWPLGSIVTQGCHASVCAIWAYKDDPHTIEYCSPENIDSMHKV 137

Query: 64  TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           TLEVKGETQ+ NL EKL AGGIAHKLWIEQPENIPTCLATKPYPKS VS  F+KLKLCK
Sbjct: 138 TLEVKGETQMENLVEKLRAGGIAHKLWIEQPENIPTCLATKPYPKSIVSPFFRKLKLCK 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548576|ref|XP_002515344.1| conserved hypothetical protein [Ricinus communis] gi|223545288|gb|EEF46793.1| conserved hypothetical protein [Ricinus communis]

 Score =  217 bits (553), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 99/117 (84%), Positives = 108/117 (92%)

Query: 6   DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
           DVLVQYVVLRRDLID WP+GSVVTQGCHASVSAIW +KDDPHTLQYCSP+NI+ MHKVTL
Sbjct: 70  DVLVQYVVLRRDLIDTWPMGSVVTQGCHASVSAIWENKDDPHTLQYCSPENIDFMHKVTL 129

Query: 66  EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           EVKGE Q++NLSEKL A GI HKLWIEQPENIPTCLAT+PYPKS ++L FKKLKLCK
Sbjct: 130 EVKGEAQMLNLSEKLTAAGIVHKLWIEQPENIPTCLATRPYPKSALTLFFKKLKLCK 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238224|ref|NP_196631.1| Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana] gi|10129648|emb|CAC08244.1| putative protein [Arabidopsis thaliana] gi|332004201|gb|AED91584.1| Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/117 (84%), Positives = 109/117 (93%)

Query: 6   DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
           DV+VQYVVLRRDLID+WPLGSVVTQGCHASV+AIWS KDDP TLQYC PQ+I+SMHKVTL
Sbjct: 69  DVVVQYVVLRRDLIDSWPLGSVVTQGCHASVAAIWSFKDDPVTLQYCDPQHIDSMHKVTL 128

Query: 66  EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           EVKGETQ++NLSEKL  GGI+HKLW+EQPENIPTC+ATKPYPKS VS  FKKLKLCK
Sbjct: 129 EVKGETQMMNLSEKLKLGGISHKLWMEQPENIPTCIATKPYPKSQVSSFFKKLKLCK 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811175|ref|XP_002873471.1| protein tyrosine phosphatase [Arabidopsis lyrata subsp. lyrata] gi|297319308|gb|EFH49730.1| protein tyrosine phosphatase [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/117 (83%), Positives = 109/117 (93%)

Query: 6   DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
           DV+VQYVVLRRDLID+WPLGSVVTQGCHASV+AIWS KDDP TLQYC PQ+I+SMHKVTL
Sbjct: 69  DVVVQYVVLRRDLIDSWPLGSVVTQGCHASVAAIWSFKDDPVTLQYCDPQHIDSMHKVTL 128

Query: 66  EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           EVKGETQ++NL+EKL  GGI+HKLW+EQPENIPTC+ATKPYPKS VS  FKKLKLCK
Sbjct: 129 EVKGETQMMNLAEKLKLGGISHKLWMEQPENIPTCIATKPYPKSQVSSFFKKLKLCK 185

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441996|ref|XP_004138768.1| PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1-like [Cucumis sativus]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/118 (84%), Positives = 106/118 (89%)

Query: 5   GDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVT 64
            DVL+QYVVLRRDLID+WPLGSVVTQGCHASVSAIW +KDDPHT  YC+P NI+SMHKVT
Sbjct: 75  ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSDYCNPHNIDSMHKVT 134

Query: 65  LEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           LEVKGETQ+VNLSEKL A  I HKLWIEQPENIPTCLATKPYPKS VS  FKKLKLCK
Sbjct: 135 LEVKGETQMVNLSEKLKANSIVHKLWIEQPENIPTCLATKPYPKSVVSPFFKKLKLCK 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507829|ref|XP_003522666.1| PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1-like [Glycine max]

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/119 (84%), Positives = 107/119 (89%)

Query: 4   NGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
           N DV+VQYVVLRRDLID WPLGSVVTQGCHASVSA+WS+K+DP T+ YCSP  I+SMHKV
Sbjct: 25  NADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKEDPFTVDYCSPDKIDSMHKV 84

Query: 64  TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           TLEVKGE QI NLSEKL AGGI HKLWIEQPENIPTCLATKPYPKS+VS  FKKLKLCK
Sbjct: 85  TLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSSVSSYFKKLKLCK 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515539|ref|XP_003526457.1| PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1-like [Glycine max]

 Score =  210 bits (535), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 106/121 (87%)

Query: 2   NNNGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMH 61
            N+ DV+VQYVVLRRDLID WPLGSVVTQGCHASVSA+W +KDDP T+ YCSP  I+SMH
Sbjct: 47  TNHADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWFNKDDPFTVDYCSPDKIDSMH 106

Query: 62  KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121
           KVTLEVKGE QI NLSEKL AGGI HKLWIEQPENIPTCLATKPYPKS VS  FKKLKLC
Sbjct: 107 KVTLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSIVSSYFKKLKLC 166

Query: 122 K 122
           K
Sbjct: 167 K 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499288|ref|XP_004160777.1| PREDICTED: LOW QUALITY PROTEIN: putative peptidyl-tRNA hydrolase PTRHD1-like [Cucumis sativus]

 Score =  210 bits (535), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/118 (83%), Positives = 105/118 (88%)

Query: 5   GDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVT 64
            DVL+QYVVLRRDLID+WPLGSVVTQGCHASVSAIW +KDDPHT  YC+P NI+SMHKVT
Sbjct: 75  ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSDYCNPHNIDSMHKVT 134

Query: 65  LEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           LEVKGETQ+VNLSEKL A  I HKLWIEQPENIPTCLATKPYP S VS  FKKLKLCK
Sbjct: 135 LEVKGETQMVNLSEKLKANSIVHKLWIEQPENIPTCLATKPYPXSVVSPFFKKLKLCK 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2159659	200	AT5G10700 [Arabidopsis thalian	0.959	0.585	0.846	7.2e-52
ZFIN|ZDB-GENE-081110-2	126	ptrhd1 "peptidyl-tRNA hydrolas	0.926	0.896	0.564	7.9e-30
FB|FBgn0038446	119	CG14903 [Drosophila melanogast	0.926	0.949	0.529	6.4e-28
UNIPROTKB|Q3SZ85	140	PTRHD1 "Putative peptidyl-tRNA	0.934	0.814	0.504	3.5e-27
UNIPROTKB|F1SDL0	140	PTRHD1 "Uncharacterized protei	0.934	0.814	0.495	4.5e-27
UNIPROTKB|Q6GMV3	140	PTRHD1 "Putative peptidyl-tRNA	0.934	0.814	0.495	1.9e-26
MGI|MGI:1916959	140	Ptrhd1 "peptidyl-tRNA hydrolas	0.934	0.814	0.487	5.2e-26
RGD|1561792	140	Ptrhd1 "peptidyl-tRNA hydrolas	0.934	0.814	0.478	6.6e-26
UNIPROTKB|E2RBH9	140	PTRHD1 "Uncharacterized protei	0.934	0.814	0.478	1.1e-25
WB|WBGene00050885	120	Y94H6A.12 [Caenorhabditis eleg	0.885	0.9	0.482	1.8e-23

TAIR|locus:2159659 AT5G10700 [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 99/117 (84%), Positives = 109/117 (93%)

Query:     6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
             DV+VQYVVLRRDLID+WPLGSVVTQGCHASV+AIWS KDDP TLQYC PQ+I+SMHKVTL
Sbjct:    69 DVVVQYVVLRRDLIDSWPLGSVVTQGCHASVAAIWSFKDDPVTLQYCDPQHIDSMHKVTL 128

Query:    66 EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
             EVKGETQ++NLSEKL  GGI+HKLW+EQPENIPTC+ATKPYPKS VS  FKKLKLCK
Sbjct:   129 EVKGETQMMNLSEKLKLGGISHKLWMEQPENIPTCIATKPYPKSQVSSFFKKLKLCK 185

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

ZFIN|ZDB-GENE-081110-2 ptrhd1 "peptidyl-tRNA hydrolase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 66/117 (56%), Positives = 79/117 (67%)

Query:     8 LVQYVVLRRDLIDA--WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
             LVQYV++R DLI +  WPLG+V+TQ CHA+ +AI  H  DP T QY +   ++SMHKV L
Sbjct:    12 LVQYVIVRSDLIHSLSWPLGAVITQACHAATAAIHLHYSDPDTQQYLA--ELDSMHKVVL 69

Query:    66 EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
             +   E  +  LS  L    IAHKLW+EQPENIPTCLA KPYPK TV    KK KL K
Sbjct:    70 QAPDEASLSTLSSTLEEKDIAHKLWMEQPENIPTCLALKPYPKETVQPYLKKFKLFK 126

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

FB|FBgn0038446 CG14903 [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 62/117 (52%), Positives = 80/117 (68%)

Query:     8 LVQYVVLRRDLIDA--WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
             +VQY+V+R DL  A  WPLG+V+ Q CHA+ + I  + +D  T+ Y +  ++++MHKV L
Sbjct:     4 IVQYIVVRSDLRSALSWPLGAVIAQSCHATAAVIHLNSEDADTVAYLN--DLDNMHKVVL 61

Query:    66 EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
             E K E+ +V LSEKL    I HKLWIEQPENIPTC+A KPY K TV    K LKL K
Sbjct:    62 EAKDESALVKLSEKLKENEIKHKLWIEQPENIPTCIALKPYVKDTVHKYVKHLKLLK 118

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|Q3SZ85 PTRHD1 "Putative peptidyl-tRNA hydrolase PTRHD1" [Bos taurus (taxid:9913)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 60/119 (50%), Positives = 77/119 (64%)

Query:     7 VLVQYVVLRRDLID---AWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
             +LVQY+VLR+DL     +WP G+VV Q CHA+ +A+  H+D PHT  Y   + +  M KV
Sbjct:    24 ILVQYLVLRKDLTQPPFSWPAGAVVAQACHAATAALHLHRDHPHTAAYL--RELERMRKV 81

Query:    64 TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
              LE   ET +  L+E L    I HKLW+EQPENIPTC+A +PYPK  VS   KK +L K
Sbjct:    82 VLEAPDETTLKLLAETLQQKNIDHKLWMEQPENIPTCIALRPYPKEEVSQYLKKFRLFK 140

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F1SDL0 PTRHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 59/119 (49%), Positives = 78/119 (65%)

Query:     7 VLVQYVVLRRDLID---AWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
             +LVQY+VLR+DL     +WP G++V QGCHA+ +A+  ++D PHT  Y   Q++  M KV
Sbjct:    24 ILVQYLVLRKDLSQTPFSWPAGALVAQGCHAATAALHIYRDHPHTAAYL--QDLERMRKV 81

Query:    64 TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
              LE   ET +  L+E L    I HKLW+EQPENIPTC+A +PYPK  V    KK +L K
Sbjct:    82 VLEAPDETTLKALAETLQEKNIDHKLWLEQPENIPTCIALRPYPKEEVGQYLKKFRLFK 140

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

UNIPROTKB|Q6GMV3 PTRHD1 "Putative peptidyl-tRNA hydrolase PTRHD1" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 59/119 (49%), Positives = 75/119 (63%)

Query:     7 VLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
             VLVQY+VLR+DL  A   WP G++V Q CHA+ +A+ +H+D PHT  Y   Q +  M KV
Sbjct:    24 VLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYL--QELGRMRKV 81

Query:    64 TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
              LE   ET +  L+E L    I H LW+EQPENI TC+A +PYPK  V    KK +L K
Sbjct:    82 VLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRLFK 140

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

MGI|MGI:1916959 Ptrhd1 "peptidyl-tRNA hydrolase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 58/119 (48%), Positives = 75/119 (63%)

Query:     7 VLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
             +LVQY+VLR+DL  A   WP G++V Q CHA+ +A+  H+D PHT  Y   + +  M KV
Sbjct:    24 ILVQYLVLRKDLSQAPFSWPTGALVAQACHAATAALHLHRDHPHTAAYL--RELGRMRKV 81

Query:    64 TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
              LE   ET +  L+E L    I H LW+EQPENI TC+A +PYPK  VS   KK +L K
Sbjct:    82 VLEAADETTLKELAETLQQKNIDHTLWLEQPENIATCIALRPYPKEEVSQYLKKFRLFK 140

GO:0003674 "molecular_function" evidence=ND

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1561792 Ptrhd1 "peptidyl-tRNA hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/119 (47%), Positives = 75/119 (63%)

Query:     7 VLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
             +LVQY+VLR+DL  A   WP G++V Q CHA+ +A+  H+D PHT  Y   + +  M KV
Sbjct:    24 ILVQYLVLRKDLSQAPFSWPTGALVAQACHAATAALHLHRDHPHTAAYL--RELGRMRKV 81

Query:    64 TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
              LE   ET +  L+E L    + H LW+EQPENI TC+A +PYPK  VS   KK +L K
Sbjct:    82 VLEAADETTLKELAETLQQKNVDHTLWLEQPENIATCIALRPYPKEEVSQYLKKFRLFK 140

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|E2RBH9 PTRHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 57/119 (47%), Positives = 76/119 (63%)

Query:     7 VLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKV 63
             +LVQY+VLR+DL  A   WP G++V Q CHA+ +A+  H+D PHT  Y   Q++  M KV
Sbjct:    24 ILVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHLHRDHPHTAAYL--QDLGRMRKV 81

Query:    64 TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
              LE   E+ +  L+E L    I H LW+EQPENI TC+A +PYPK  V+   KK +L K
Sbjct:    82 VLEAADESTLKELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVNQYLKKYRLFK 140

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

WB|WBGene00050885 Y94H6A.12 [Caenorhabditis elegans (taxid:6239)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 55/114 (48%), Positives = 74/114 (64%)

Query:     9 VQYVVLRRDLID--AWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLE 66
             V YV+LRRDL     WPLG+V TQ  HA+ +++W  ++DP+T  Y S  N++SMHKVTL 
Sbjct:    10 VMYVILRRDLQTKLGWPLGAVCTQAAHAASASMWIFRNDPNTEAYTS--NLDSMHKVTLG 67

Query:    67 VKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKL 120
             V  E +I  +++KL A  + HK+WIE  +  P C+A KPYPK  V    K LKL
Sbjct:    68 VDSEEEIKKVADKLTARNVDHKVWIE--DGFPVCIALKPYPKEEVKNALKGLKL 119

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZ85	PTRD1_BOVIN	3, ., 1, ., 1, ., 2, 9	0.5	0.9426	0.8214	yes	no
D3Z4S3	PTRD1_MOUSE	3, ., 1, ., 1, ., 2, 9	0.4833	0.9426	0.8214	yes	no
Q6GMV3	PTRD1_HUMAN	3, ., 1, ., 1, ., 2, 9	0.4916	0.9426	0.8214	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	LOW CONFIDENCE prediction!
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0753000101 hypothetical protein (140 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
cd02429	116	cd02429, PTH2_like, Peptidyl-tRNA hydrolase, type	1e-61
cd02407	115	cd02407, PTH2_family, Peptidyl-tRNA hydrolase, typ	7e-40
PRK04322	113	PRK04322, PRK04322, peptidyl-tRNA hydrolase; Provi	6e-05
pfam01981	116	pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2	2e-04
cd02430	115	cd02430, PTH2, Peptidyl-tRNA hydrolase, type 2 (PT	0.001

>gnl|CDD|239107 cd02429, PTH2_like, Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

 Score =  183 bits (467), Expect = 1e-61
 Identities = 67/116 (57%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 8   LVQYVVLRRDLIDA--WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
           LVQYV+LRRDL     WPLG+V+ Q CHA+V+ I   + DP T +Y    N+++MHKV L
Sbjct: 1   LVQYVILRRDLQTKLSWPLGAVIAQACHAAVAVIHLFRSDPDTKKYAYLSNLDNMHKVVL 60

Query: 66  EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121
           EV  E  + NLS KL    I HKLWIEQPENIPTC+A KPYPK TV+   KKLKL 
Sbjct: 61  EVPDEAALKNLSSKLTENSIKHKLWIEQPENIPTCIALKPYPKETVASYLKKLKLL 116

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup. Length = 116

>gnl|CDD|239091 cd02407, PTH2_family, Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

 Score =  128 bits (325), Expect = 7e-40
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 8   LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEV 67
               +V+R DL      G +  Q  HA+++A      DP T        +    KV L+V
Sbjct: 1   YKMVIVVRNDL--KMGKGKIAAQCAHAALAAYKKAMKDPPT--LLRAWELEGQKKVVLKV 56

Query: 68  KGETQIVNLSEKLNAGGIAHKLWIE-----QPENIPTCLATKPYPKSTVSLVFKKLKLC 121
             E +++ L++K    G+ H L  +      P   PT LA  P PK  V  V   LKL 
Sbjct: 57  PSEEELLELAKKAKELGLPHSLIQDAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL 115

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. Length = 115

>gnl|CDD|235280 PRK04322, PRK04322, peptidyl-tRNA hydrolase; Provisional

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 15/119 (12%)

Query: 10  QYVVLRRDLIDAWPLGSVVTQGCHASVSA-IWSHKDDPHTLQYCSPQNINS-MHKVTLEV 67
           Q +V+R DL      G +  Q  HA+VSA   + K +   L+    + +N    KV L+V
Sbjct: 1   QVIVVRTDL--KMGKGKLAAQVAHAAVSAYEKADKSNREWLE----EWLNEGQKKVVLKV 54

Query: 68  KGETQIVNLSEKLNAGGIAHKLWI------EQPENIPTCLATKPYPKSTVSLVFKKLKL 120
             E +++ L EK    G+   L I      + P    T L   P P+  +  +   LKL
Sbjct: 55  NSEEELLELKEKAERLGLPTAL-IRDAGLTQLPPGTVTALGIGPAPEEKIDKITGDLKL 112

Length = 113

>gnl|CDD|190182 pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 8   LVQYVVLRRDLIDAWPLGSVVTQGCHASVSA-IWSHKDDPHTLQ--YCSPQNINSMHKVT 64
               +V+R DL      G +  Q  HA+V A   + K +P  L+      Q      K+ 
Sbjct: 2   YKMVLVVRTDL--KMGKGKIAAQCAHAAVGAYKKALKANPELLKAWLREGQK-----KIV 54

Query: 65  LEVKGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLK 119
           L+V  E +++ L EK  + G+   L       +      T L   P PK  +  V   LK
Sbjct: 55  LKVNSEEELLELKEKAKSLGLPTSLIQDAGRTQIAPGTVTVLGIGPAPKELIDKVTGHLK 114

Query: 120 L 120
           L
Sbjct: 115 L 115

Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation. Length = 116

>gnl|CDD|239108 cd02430, PTH2, Peptidyl-tRNA hydrolase, type 2 (PTH2)

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 21/122 (17%)

Query: 10  QYVVLRRDLIDAWPL--GSVVTQGCHASVSA-IWSHKDDPHTLQ---YCSPQNINSMHKV 63
             +V+R DL     +  G +  Q  HA++ A   + K +P  L+       +      K+
Sbjct: 3   MVLVVRNDL----KMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQK------KI 52

Query: 64  TLEVKGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKL 118
            L+V  E +++ L +K  + G+   L       +      T L   P P+  +  V   L
Sbjct: 53  VLKVNSEEELLELKKKAKSLGLPTSLIQDAGRTQIAPGTITVLGIGPAPEELIDKVTGHL 112

Query: 119 KL 120
           KL
Sbjct: 113 KL 114

Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes. Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
cd02429	116	PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_l	100.0
TIGR00283	115	arch_pth2 peptidyl-tRNA hydrolase. This model desc	100.0
PF01981	116	PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR0	100.0
cd02430	115	PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Pepti	100.0
cd02407	115	PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)	100.0
PRK04322	113	peptidyl-tRNA hydrolase; Provisional	100.0
KOG3282	190	consensus Uncharacterized conserved protein [Funct	100.0
COG1990	122	pth2 Peptidyl-tRNA hydrolase [Translation, ribosom	100.0
KOG3305	121	consensus Uncharacterized conserved protein [Funct	100.0
PF09391	133	DUF2000: Protein of unknown function (DUF2000); In	98.69
COG4954	135	Uncharacterized protein conserved in bacteria [Fun	96.46
PF11823	73	DUF3343: Protein of unknown function (DUF3343); In	88.49

>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

Probab=100.00  E-value=3.2e-47  Score=272.36  Aligned_cols=111  Identities=59%  Similarity=0.912  Sum_probs=103.0

Q ss_pred             eEEEEEEeCCC----CCCCCcchHHHhHHHHHHHHHHHhcCChhH-hhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Q 042780            8 LVQYVVLRRDL----IDAWPLGSVVTQGCHASVSAIWSHKDDPHT-LQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNA   82 (122)
Q Consensus         8 ~kmvivVR~DL----~m~w~~GkiaAQ~~HAa~~~~~~~~~~~~~-~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~   82 (122)
                      +.||||||+||    +|  |+||++|||||||+++|+.+++++.+ ++|+- ++++||+||||+|+||++|.+|.++|++
T Consensus         1 ~vq~ivVR~DL~~~~~m--~kGkiaAQ~aHAav~a~~~~~~~~~~~~~~~~-~~~~g~~KVVLkv~~e~eL~~L~~~a~~   77 (116)
T cd02429           1 LVQYVILRRDLQTKLSW--PLGAVIAQACHAAVAVIHLFRSDPDTKKYAYL-SNLDNMHKVVLEVPDEAALKNLSSKLTE   77 (116)
T ss_pred             CEEEEEEeccccccCCC--CccHHHHHHHHHHHHHHHHHhhCchHHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            58999999999    88  99999999999999999888887765 55632 3448999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           83 GGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        83 ~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      .||+|++|+|+||||.|||||||+|++.||++|||||||
T Consensus        78 ~gi~~~l~te~p~gt~T~LaigP~~~~~id~it~~LkLl  116 (116)
T cd02429          78 NSIKHKLWIEQPENIPTCIALKPYPKETVASYLKKLKLL  116 (116)
T ss_pred             cCCCeEEEEEcCCCCceEEEeCCCCHHHHHHHhCCCcCC
Confidence            999999999999999999999999999999999999997

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.

>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase

Probab=100.00  E-value=4.9e-45  Score=260.58  Aligned_cols=108  Identities=21%  Similarity=0.352  Sum_probs=101.9

Q ss_pred             eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCChhH-hhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780            8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDPHT-LQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI   85 (122)
Q Consensus         8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~~~-~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi   85 (122)
                      +||||+||+||+|  |+||+||||||||+++|... ++++.+ ++|++    .||+||||+++|+++|++|.++|++.|+
T Consensus         1 ~k~vlvVr~DL~M--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~G~~KVvlk~~~~~el~~l~~~a~~~~l   74 (115)
T TIGR00283         1 MKMVIVIRDDLGM--GKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLD----EGQKKVVLKVNSLEELLEIYHKAESLGL   74 (115)
T ss_pred             CeEEEEEeCCCCC--ChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            6999999999999  99999999999999999765 455554 89998    9999999999999999999999999999


Q ss_pred             CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ++++|     +|+||||.|||||||+|++.||+||||||||
T Consensus        75 ~~~~v~DAG~Tei~pgs~TvlaigP~~~~~id~itg~LkLl  115 (115)
T TIGR00283        75 VTGLIRDAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL  115 (115)
T ss_pred             CEEEEEcCCcceeCCCCcEEEEECCCCHHHHHHHhCCCccC
Confidence            99999     5999999999999999999999999999997

This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.

>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation

Probab=100.00  E-value=1.5e-44  Score=256.65  Aligned_cols=109  Identities=30%  Similarity=0.412  Sum_probs=99.6

Q ss_pred             eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhc--CChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCC
Q 042780            7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHK--DDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGG   84 (122)
Q Consensus         7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~--~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~g   84 (122)
                      ++|||||||+||+|  |+||++|||||||+++|..+.  +.+.+.+|..    .||+||||+++|+++|++|.++|++.|
T Consensus         1 ~~k~vivVr~DL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~Kivlkv~~e~~L~~l~~~a~~~g   74 (116)
T PF01981_consen    1 ELKMVIVVRKDLKM--SKGKIAAQCAHAAVAAYAKLHEDDPEWLREWEN----NGQKKIVLKVPSEEELLELAKKAKEAG   74 (116)
T ss_dssp             SEEEEEEEESSSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEEEECCCCC--CcchHHHHHHHHHHHHHHHhhhcCHHHHHHHhc----CCCceEEEEeCCHHHHHHHHHHHHHCC
Confidence            58999999999999  999999999999999998873  2345678887    999999999999999999999999999


Q ss_pred             CCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           85 IAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        85 i~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      +++++|+     |+||||.|||||||+|++.||+||||||||
T Consensus        75 l~~~~i~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~LkL~  116 (116)
T PF01981_consen   75 LPHYLIRDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHLKLL  116 (116)
T ss_dssp             -SEEEEEETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTSEB-
T ss_pred             CCEEEEEECCCCcCCCCCeEEEEECcCCHHHHHHHhCcCcCC
Confidence            9999998     899999999999999999999999999997

; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.

>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2)

Probab=100.00  E-value=9.3e-44  Score=253.94  Aligned_cols=108  Identities=25%  Similarity=0.343  Sum_probs=101.2

Q ss_pred             eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCChh-HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780            8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDPH-TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI   85 (122)
Q Consensus         8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~~-~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi   85 (122)
                      +||||+||+||+|  |+||++|||||||+++|... ++++. +++|.+    .||+||||+++|+++|.+|.++|++.||
T Consensus         1 ~K~vivVr~DL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~G~~KiVl~~~~~~el~~l~~~a~~~~l   74 (115)
T cd02430           1 YKMVLVVRNDLKM--GKGKIAAQCAHAALGAYKKAMKSNPELLRAWER----EGQKKIVLKVNSEEELLELKKKAKSLGL   74 (115)
T ss_pred             CEEEEEEeCCCCC--CcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHh----cCCcEEEEecCCHHHHHHHHHHHHHcCC
Confidence            6999999999999  99999999999999999765 45554 577887    9999999999999999999999999999


Q ss_pred             CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ++++|     +|+||||.||||+||+|++.||+||||||||
T Consensus        75 ~~~~v~DAG~Tev~~gt~T~laigP~~~~~i~~itg~LkL~  115 (115)
T cd02430          75 PTSLIQDAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL  115 (115)
T ss_pred             CeEEEEeCCCcccCCCCceEEEeCCCCHHHHHHhhCCCcCC
Confidence            99999     4999999999999999999999999999997

Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.

>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

Probab=100.00  E-value=1.2e-43  Score=253.15  Aligned_cols=108  Identities=31%  Similarity=0.413  Sum_probs=101.3

Q ss_pred             eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCCh--hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780            8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDP--HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI   85 (122)
Q Consensus         8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~--~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi   85 (122)
                      +||||+||+||+|  |+||++|||||||+++|..+++++  .+.+|..    .||+||||+++|+++|++|.++|++.||
T Consensus         1 ~k~vivVr~dl~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~KvVl~v~~~~~l~~l~~~a~~~gl   74 (115)
T cd02407           1 YKMVIVVRNDLKM--GKGKIAAQCAHAALAAYKKAMKDPPTLLRAWEL----EGQKKVVLKVPSEEELLELAKKAKELGL   74 (115)
T ss_pred             CEEEEEEECCCCC--ChhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHh----CCCcEEEEECCCHHHHHHHHHHHHHcCC
Confidence            6999999999999  999999999999999999886543  3566776    9999999999999999999999999999


Q ss_pred             CeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           86 AHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        86 ~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ++++|+     |+||||.|||||||+|++.||+||||||||
T Consensus        75 ~~~~v~DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~LkL~  115 (115)
T cd02407          75 PHSLIQDAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL  115 (115)
T ss_pred             CeEEEEECCCcccCCCCceEEEECCCCHHHHHHHcCcCcCC
Confidence            999998     599999999999999999999999999997

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.

>PRK04322 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=1.8e-43  Score=251.80  Aligned_cols=106  Identities=29%  Similarity=0.384  Sum_probs=98.9

Q ss_pred             EEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCCh-hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780           10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDP-HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAH   87 (122)
Q Consensus        10 mvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~-~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~   87 (122)
                      |||+||+||+|  |+||++|||||||+++|... ++++ .+++|..    .||+||||+++|+++|++|.++|++.||++
T Consensus         1 ~vivVr~DL~M--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~   74 (113)
T PRK04322          1 QVIVVRTDLKM--GKGKLAAQVAHAAVSAYEKADKSNREWLEEWLN----EGQKKVVLKVNSEEELLELKEKAERLGLPT   74 (113)
T ss_pred             CEEEEeCCCCC--CcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCcEEEEeCCCHHHHHHHHHHHHHcCCCE
Confidence            89999999999  99999999999999999665 4444 3467776    999999999999999999999999999999


Q ss_pred             EEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           88 KLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        88 ~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ++|     +|+||||.|||||||+|++.||+||||||||
T Consensus        75 ~~v~DAG~Tei~~gs~TvlaigP~~~~~i~~itg~LkLl  113 (113)
T PRK04322         75 ALIRDAGLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL  113 (113)
T ss_pred             EEEEeCCCcccCCCCcEEEEeCCCCHHHHHHhhCCCcCC
Confidence            999     5999999999999999999999999999997

>KOG3282 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.5e-42  Score=261.59  Aligned_cols=112  Identities=21%  Similarity=0.254  Sum_probs=106.1

Q ss_pred             CCceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCCh-hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHH
Q 042780            4 NGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDP-HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLN   81 (122)
Q Consensus         4 ~~~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~-~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~   81 (122)
                      ..+++||+||||+||+|  ++||||||||||++++|+++ +.+| .+++|.+    .||.|||||++||++|.+|++.|+
T Consensus        72 ~~~~~KMvLVVR~DLkM--gkGKIAAQc~HAalg~Y~~l~~~~p~ll~~We~----~GQ~KIvvk~~~e~~l~~l~~~A~  145 (190)
T KOG3282|consen   72 LKGNFKMVLVVRNDLKM--GKGKIAAQCAHAALGVYKHLMQRDPELLRRWEN----CGQAKIVVKAESEEELMELQKDAK  145 (190)
T ss_pred             cCCceEEEEEEeccCCC--ccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHH----cCCceEEEEcCCHHHHHHHHHHHH
Confidence            45669999999999999  99999999999999999998 4555 5799999    999999999999999999999999


Q ss_pred             HCCCCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           82 AGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        82 ~~gi~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ..|++++++.     ||+|||.||++|||+|.+.||+||||||||
T Consensus       146 ~~gl~t~~i~DAGrTQIa~gS~TVl~Igpg~~~~id~VTG~LKL~  190 (190)
T KOG3282|consen  146 KLGLYTHLIQDAGRTQIAPGSRTVLGIGPGPVEVIDSVTGHLKLY  190 (190)
T ss_pred             HcCCcEEEEEcCCccccCCCCeEEEEEcCccHHHHhhcCcceeeC
Confidence            9999999997     999999999999999999999999999997

>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-40  Score=238.68  Aligned_cols=111  Identities=23%  Similarity=0.277  Sum_probs=103.0

Q ss_pred             CceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCCh----hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHH
Q 042780            5 GDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDP----HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKL   80 (122)
Q Consensus         5 ~~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~----~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a   80 (122)
                      ...+||+|+||+||+|  ++||++||||||++.++....+..    .+++|++    .||+||||||+|+++|+++.++|
T Consensus         3 ~~~~k~vIvVr~Dl~m--~kGKiaaQvaHaa~~~~~~~~~~~~~~~~~~eWl~----~Gq~Kivlkv~~~~eL~~~~~~A   76 (122)
T COG1990           3 RGQYKMVIVVRDDLKM--SKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLR----EGQKKIVLKVGSLDELLELHQKA   76 (122)
T ss_pred             cccceeEEEEeccccc--ccchHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH----cCCceEEEEcCCHHHHHHHHHHH
Confidence            3468999999999999  999999999999999998875433    4567776    99999999999999999999999


Q ss_pred             HHCCCCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           81 NAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        81 ~~~gi~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      +..|+++++++     |+||||+|||++||+|++.+|+|||+||||
T Consensus        77 ~~~gl~~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~lkL~  122 (122)
T COG1990          77 ESLGLPTALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL  122 (122)
T ss_pred             HHcCChHHHHHhcCccccCCCCeEEEEECCCchhhhcccccccccC
Confidence            99999999996     999999999999999999999999999997

>KOG3305 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.7e-35  Score=205.52  Aligned_cols=118  Identities=68%  Similarity=1.163  Sum_probs=113.9

Q ss_pred             CceeEEEEEEeCCCCCC--CCcchHHHhHHHHHHHHHHHhcCChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Q 042780            5 GDVLVQYVVLRRDLIDA--WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNA   82 (122)
Q Consensus         5 ~~~~kmvivVR~DL~m~--w~~GkiaAQ~~HAa~~~~~~~~~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~   82 (122)
                      ++.++||||+|+||.-.  ||.|.++||.|||+.++++.+++|+.+.+|+++.++++|+||+|++++|.+|.+|.++++.
T Consensus         1 ~~~ivqyivlr~dl~~alswplgaviaq~chas~a~i~~~~dd~~tl~y~dpq~id~mhkv~le~k~es~lm~lseklk~   80 (121)
T KOG3305|consen    1 DDNIVQYIVLRRDLIDALSWPLGAVIAQGCHASAAAIHLFKDDADTLAYCDPQDIDNMHKVTLEAKDESALMKLSEKLKE   80 (121)
T ss_pred             CCcceeEeeehHhhhhhccCchhHHHHhhhhHHHHHHHhccCCcchhhcCChhhhhhhhheeeeecChHHHHhHHHHHhc
Confidence            36789999999999764  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCceEEEEcCCCCcchhhhhCCCCCCC
Q 042780           83 GGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK  122 (122)
Q Consensus        83 ~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~itg~LkLl~  122 (122)
                      .+|.|.+|+|+|+|++||||+.|+|++.+.++++||||+|
T Consensus        81 ~~i~hklwieqpeniptcia~kpy~k~~v~~f~k~lkl~k  120 (121)
T KOG3305|consen   81 GEIKHKLWIEQPENIPTCIALKPYPKDQVHKFFKHLKLCK  120 (121)
T ss_pred             CCchhhhhhcCccCCCceeecCCCcHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999975

>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function

Probab=98.69  E-value=1e-07  Score=69.74  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcC-------ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHH
Q 042780            7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKD-------DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEK   79 (122)
Q Consensus         7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~-------~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~   79 (122)
                      +.|.|+|||.||    +.|.++-=++|-+++.-....+       |.+=..|.   .+..+.=+||+. |.++|.++.++
T Consensus         1 d~K~viVv~~~L----p~g~~~NaaA~L~~~Lg~~~p~l~G~~~~D~~g~~h~---gi~~~PipIL~a-~~~~L~~l~~~   72 (133)
T PF09391_consen    1 DTKCVIVVDEDL----PPGLAANAAAVLGLGLGAAHPELVGEDYRDADGNAHP---GISHIPIPILKA-NSEQLRELRQK   72 (133)
T ss_dssp             SEEEEEEEETTS-----HHHHHHHHHHHHHHHHHH-GGGB-S-EE-TTS-EE------BSS-EEEEEE--HHHHHHHHHH
T ss_pred             CcEEEEEECCCC----hHHHHHHHHHHHHHHHhccCccccCCcccCCCCCCCC---CCCCcCeEEEEc-CHHHHHHHHHH
Confidence            369999999999    8899999999999887765411       22222332   257888899999 56799999999


Q ss_pred             HHHCCCCeEEEE-----------------EeCCCCceEEEEcC-CCCcchhhhhCCCCCCC
Q 042780           80 LNAGGIAHKLWI-----------------EQPENIPTCLATKP-YPKSTVSLVFKKLKLCK  122 (122)
Q Consensus        80 a~~~gi~~~l~~-----------------e~~~gt~TvlaigP-~~~~~i~~itg~LkLl~  122 (122)
                      |.+.++.+..+.                 +.++.....+||+= +|+..|+++||+|+|||
T Consensus        73 a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~y~Gi~L~G~kk~V~kltg~l~L~r  133 (133)
T PF09391_consen   73 ALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLEYVGIALFGPKKAVDKLTGSLPLLR  133 (133)
T ss_dssp             HHHTT---EEEEGGGGG---HHHHHHHHTT--TTT--EEEEEEEEEHHHHHHHCTT-EE--
T ss_pred             HHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhccEEEEEEECCHHHHHHHhcCCCCCC
Confidence            999999888886                 45666655555542 58899999999999986

The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.

>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.46  E-value=0.012  Score=42.34  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCChhH----hhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780            8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHT----LQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG   83 (122)
Q Consensus         8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~~~----~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~   83 (122)
                      .|..||+|.||.. |.|=-+-|=-.-..++..-+...+|.-    .-|-   .+.=|.-|||.. |.+.|..+-+.+-++
T Consensus         4 tkiaivlrddlav-wqklnvtaflmsgivaq~peiigepyrd~agn~yn---plsiqpvivls~-dqetl~aihrraler   78 (135)
T COG4954           4 TKIAIVLRDDLAV-WQKLNVTAFLMSGIVAQSPEIIGEPYRDAAGNTYN---PLSIQPVIVLSG-DQETLKAIHRRALER   78 (135)
T ss_pred             ceEEEEEecchHH-HHHhhHHHHHHhhhhhcCchhcCcccccccCCccC---ccccceEEEEeC-CHHHHHHHHHHHHhc
Confidence            4788999999954 776555332222222222111111211    1121   235677777765 477999999999999


Q ss_pred             CCCeEEEE-----------------EeCCCCceEEEEcC-CCCcchhhhhCCCCC
Q 042780           84 GIAHKLWI-----------------EQPENIPTCLATKP-YPKSTVSLVFKKLKL  120 (122)
Q Consensus        84 gi~~~l~~-----------------e~~~gt~TvlaigP-~~~~~i~~itg~LkL  120 (122)
                      ++++.+++                 |..|.+.-|++|.- ..+..+|+||+.-++
T Consensus        79 ~vttslyieemfstghdaanravfa~f~pd~akvvgialraekkivdkitkgarm  133 (135)
T COG4954          79 KVTTSLYIEEMFSTGHDAANRAVFAEFGPDSAKVVGIALRAEKKIVDKITKGARM  133 (135)
T ss_pred             CCCcceeHHHHHhccchHHHHHHHHhhCCCcceeeeeehhhhhHHHHHHcccccc
Confidence            99999995                 77889988887753 344568999998665

>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised

Probab=88.49  E-value=2.2  Score=27.36  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=48.2

Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEcCCCCcchhhhhCCC
Q 042780           60 MHKVTLEVKGETQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATKPYPKSTVSLVFKKL  118 (122)
Q Consensus        60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~---e~~~gt~TvlaigP~~~~~i~~itg~L  118 (122)
                      |.+.++-.+|..+-..+.+.++++|+++.++-   |+..|=-.+|.+-+...+.+..+.+.-
T Consensus         1 m~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~   62 (73)
T PF11823_consen    1 MKYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEEN   62 (73)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHC
Confidence            45677778889999999999999999999885   888888889999887767676665543

This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1wn2_A	121	Peptidyl-tRNA hydrolase; riken structural genomics	1e-24
1xty_A	120	PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.	6e-23
2zv3_A	115	PTH, peptidyl-tRNA hydrolase; cytoplasm, structura	6e-23
1q7s_A	117	BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapi	2e-22
1rlk_A	117	Hypothetical protein TA0108; structural genomics,	4e-22
1rzw_A	123	Protein AF2095(GR4); beta-sheet of 4 parallel, ant	4e-21

>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A Length = 121

 Score = 89.5 bits (222), Expect = 1e-24
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 4   NGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIW-SHKDDPHTLQYCSPQNINSMHK 62
                 Q +V R DL      G +  Q  H +V+A + ++K      +           K
Sbjct: 3   KMFKYKQVIVARADL--KLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAW---FREGQKK 57

Query: 63  VTLEVKGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKK 117
           V ++V+ E ++  L  +    G+ + L       E P    T LA  P P+  V  V   
Sbjct: 58  VVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGN 117

Query: 118 LKL 120
           LKL
Sbjct: 118 LKL 120

>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi} Length = 120

 Score = 85.3 bits (211), Expect = 6e-23
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 7   VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIW--SHKDDPHTLQYCSPQNINSMHKVT 64
           ++   +V+R D+      G +  Q  HA+V+ +    + ++    ++ +        K+ 
Sbjct: 1   MIKMVIVVRSDI--KMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKII 58

Query: 65  LEVKGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLK 119
           ++V    +I++ ++K     +   +       +      TCL   P P++ V  +   LK
Sbjct: 59  VKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLK 118

Query: 120 L 120
           L
Sbjct: 119 L 119

>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Length = 115

 Score = 85.2 bits (211), Expect = 6e-23
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 10  QYVVLRRDLIDAWPLGSVVTQGCHASVSAIW-SHKDDPHTLQYCSPQNINSMHKVTLEVK 68
             VV+R DL      G +V QG HA + A   + + +P  +            KV ++V 
Sbjct: 3   MVVVIRNDL--GMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEW---LREGQKKVVVKVN 57

Query: 69  GETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKL 120
            E +++++  K  + G+   +       +      T +A  P     +  +   LKL
Sbjct: 58  SEKELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKL 114

>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1 Length = 117

 Score = 84.1 bits (208), Expect = 2e-22
 Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 11/119 (9%)

Query: 8   LVQYVVLRRDLIDAWPLGSVVTQGCHASVSA-IWSHKDDPHTLQYCSPQNINSMHKVTLE 66
               +V+R DL      G V  Q  HA+VSA     + +P  L+           KV ++
Sbjct: 3   YKMILVVRNDL--KMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCG---QPKVVVK 57

Query: 67  VKGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKL 120
              E  ++ L       G+   L       +      T L   P P   +  V   LKL
Sbjct: 58  APDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1 Length = 117

 Score = 83.4 bits (206), Expect = 4e-22
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 8   LVQYVVLRRDLIDAWPLGSVVTQGCHASVSA-IWSHKDDPHTLQYCSPQNINSMHKVTLE 66
               + +R+DL      G +  Q  HA+V+  I S K +         +      K+ ++
Sbjct: 3   KKMVIAVRKDL--DMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEG---QRKIVVK 57

Query: 67  VKGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKL 120
           V    +I+ +    ++ GI +++       +      TC+   P  +  +  +  K KL
Sbjct: 58  VNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKL 116

>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A Length = 123

 Score = 80.7 bits (199), Expect = 4e-21
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 8   LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEV 67
           L Q +V+R DL      G +  Q  HA++      K D    +           KV L+V
Sbjct: 3   LKQVIVVRDDL--KLSRGKLAVQVAHAAIIGYL--KSDSSLRRK---WLDEGQKKVVLKV 55

Query: 68  KGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
           K   +++ +  K  + G+   L       E P    T +   P  +  +  V   L L K
Sbjct: 56  KSLEELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLLK 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1rzw_A	123	Protein AF2095(GR4); beta-sheet of 4 parallel, ant	100.0
1xty_A	120	PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.	100.0
1rlk_A	117	Hypothetical protein TA0108; structural genomics,	100.0
2zv3_A	115	PTH, peptidyl-tRNA hydrolase; cytoplasm, structura	100.0
1wn2_A	121	Peptidyl-tRNA hydrolase; riken structural genomics	100.0
1q7s_A	117	BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapi	100.0
2gax_A	135	Hypothetical protein ATU0240; MCSG, structural gen	99.89

>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A

Probab=100.00  E-value=3.7e-45  Score=262.85  Aligned_cols=110  Identities=25%  Similarity=0.306  Sum_probs=104.1

Q ss_pred             ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780            6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI   85 (122)
Q Consensus         6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi   85 (122)
                      .++|||||||+||+|  |+||+||||||||+++|+.+ +.+.+++|..    .||+||||+++|+++|.+|.++|++.||
T Consensus         1 ~~~k~vivVr~DL~M--~~GKiaAQ~~HAa~~~~~~~-~~~~l~~W~~----~G~~Kvvlk~~~e~el~~L~~~a~~~gl   73 (123)
T 1rzw_A            1 MTLKQVIVVRDDLKL--SRGKLAVQVAHAAIIGYLKS-DSSLRRKWLD----EGQKKVVLKVKSLEELLGIKHKAESLGL   73 (123)
T ss_dssp             CCCEEEEEEECCCSS--CTTHHHHHHHHHHHHHHHHH-HTTHHHHTGG----GCSSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEEEECCCCC--CcchHHHHHHHHHHHHHHHc-CHHHHHHHHH----CCCcEEEEecCCHHHHHHHHHHHHHCCC
Confidence            368999999999999  99999999999999999998 5566788887    9999999999999999999999999999


Q ss_pred             CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCCC
Q 042780           86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLCK  122 (122)
Q Consensus        86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl~  122 (122)
                      ++++|     +|+||||.|||||||+|++.||+|||+||||+
T Consensus        74 ~~~~I~DAG~Tei~pgt~TvlaigP~p~~~vd~itg~LkL~~  115 (123)
T 1rzw_A           74 VTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLLK  115 (123)
T ss_dssp             CEEEECCTTCCSCSTTSCEEEEEEEECHHHHHHHHTCSCCCC
T ss_pred             CEEEEECCCCcccCCCCEEEEEeCcCCHHHHHHhcCCCeecc
Confidence            99998     49999999999999999999999999999996

>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}

Probab=100.00  E-value=3.9e-45  Score=261.10  Aligned_cols=113  Identities=19%  Similarity=0.270  Sum_probs=103.0

Q ss_pred             eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cC-ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCC
Q 042780            7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KD-DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGG   84 (122)
Q Consensus         7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~-~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~g   84 (122)
                      ++|||||||+||+|  |+||++|||||||+++|+.+ ++ ++++.+|+..|+..||+||||+++|+++|++|.++|++.|
T Consensus         1 ~~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~g   78 (120)
T 1xty_A            1 MIKMVIVVRSDIKM--GKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMN   78 (120)
T ss_dssp             CEEEEEEEESSSCC--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCC
Confidence            58999999999999  99999999999999999887 43 3444455555555999999999999999999999999999


Q ss_pred             CCeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           85 IAHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        85 i~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      |++++|     +|+||||.|||||||+|++.||+||||||||
T Consensus        79 l~~~~i~DAG~Tei~~gs~TvlaigP~~~~~vd~itg~LkL~  120 (120)
T 1xty_A           79 LPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL  120 (120)
T ss_dssp             CCEEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHTTCEEC
T ss_pred             CCEEEEEcCCccccCCCCeEEEEeccCCHHHHHHHhCCCCCC
Confidence            999999     5999999999999999999999999999997

>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1

Probab=100.00  E-value=4.4e-44  Score=254.67  Aligned_cols=110  Identities=19%  Similarity=0.262  Sum_probs=102.3

Q ss_pred             ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCC-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780            6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDD-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG   83 (122)
Q Consensus         6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~   83 (122)
                      +++|||||||+||+|  |+||++|||||||+++|..+ +++ +.+++|..    .||+||||+++|+++|.+|.++|++.
T Consensus         1 ~e~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~kiVlk~~~e~~l~~l~~~a~~~   74 (117)
T 1rlk_A            1 MVKKMVIAVRKDLDM--GKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYD----EGQRKIVVKVNDLDEIMEIKRMADSM   74 (117)
T ss_dssp             -CEEEEEEEESTTCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCeEEEEecCCHHHHHHHHHHHHHC
Confidence            479999999999999  99999999999999999876 333 45678887    99999999999999999999999999


Q ss_pred             CCCeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           84 GIAHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        84 gi~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ||++++|     +|+||||.|||||||+|++.||+||||||||
T Consensus        75 gl~~~~v~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~  117 (117)
T 1rlk_A           75 GIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL  117 (117)
T ss_dssp             TCCEEEEECCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             CCCEEEEEeCCccCcCCCCEEEEEeCcCCHHHHHHHcCCCCCC
Confidence            9999999     5999999999999999999999999999997

>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=7e-44  Score=252.96  Aligned_cols=108  Identities=22%  Similarity=0.333  Sum_probs=95.8

Q ss_pred             eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCC-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780            8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDD-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI   85 (122)
Q Consensus         8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi   85 (122)
                      +|||||||+||+|  |+||++|||||||+++|..+ +++ +.+++|..    .||+||||+++|+++|.+|.++|++.||
T Consensus         1 ~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~kivlk~~~e~~l~~l~~~a~~~gl   74 (115)
T 2zv3_A            1 MKMVVVIRNDLGM--GKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLR----EGQKKVVVKVNSEKELIDIYNKARSEGL   74 (115)
T ss_dssp             CEEEEEEESSSCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCeEEEEecCCHHHHHHHHHHHHHcCC
Confidence            6999999999999  99999999999999999876 334 45678887    9999999999999999999999999999


Q ss_pred             CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ++++|     +|+||||.|||||||+|++.||+||||||||
T Consensus        75 ~~~~i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~  115 (115)
T 2zv3_A           75 PCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL  115 (115)
T ss_dssp             CEEEEEECC-------EEEEEEEEEECHHHHHHHHTTSCBC
T ss_pred             CEEEEEeCCceecCCCCEEEEEeCcCCHHHHHHHhCCCCCC
Confidence            99999     5999999999999999999999999999997

>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A

Probab=100.00  E-value=6.1e-44  Score=255.46  Aligned_cols=110  Identities=27%  Similarity=0.330  Sum_probs=102.9

Q ss_pred             ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCC-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780            6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDD-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG   83 (122)
Q Consensus         6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~   83 (122)
                      .++|||||||+||+|  |+||++|||||||+++|+.+ +++ +.+++|..    .||+||||+++|+++|.+|.++|++.
T Consensus         5 ~~~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~Kvvlk~~~e~el~~l~~~a~~~   78 (121)
T 1wn2_A            5 FKYKQVIVARADLKL--SKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFR----EGQKKVVVKVESEEELFKLKAEAEKL   78 (121)
T ss_dssp             CCEEEEEEEESSSCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHT
T ss_pred             ccceEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCcEEEEecCCHHHHHHHHHHHHHC
Confidence            578999999999999  99999999999999999886 433 45678887    99999999999999999999999999


Q ss_pred             CCCeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           84 GIAHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        84 gi~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ||++++|     +|+||||.|||||||+|++.||+||||||||
T Consensus        79 gl~~~~i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~LkL~  121 (121)
T 1wn2_A           79 GLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL  121 (121)
T ss_dssp             TCCEEEEECTTCTTSCTTCEEEEEEEEEEHHHHHHHHTTSEEC
T ss_pred             CCCEEEEEcCCccccCCCCEEEEEeccCCHHHHHHhcCCCCCC
Confidence            9999999     4999999999999999999999999999997

>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1

Probab=100.00  E-value=1e-43  Score=252.82  Aligned_cols=110  Identities=25%  Similarity=0.260  Sum_probs=103.5

Q ss_pred             ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCCh-hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780            6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDP-HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG   83 (122)
Q Consensus         6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~-~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~   83 (122)
                      +++|||||||+||+|  |+||++|||||||+++|+.+ ++++ .+.+|..    .||+||||+++|+++|.+|.++|++.
T Consensus         1 ~~~K~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~KVvlk~~~e~~l~~l~~~a~~~   74 (117)
T 1q7s_A            1 GEYKMILVVRNDLKM--GKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEY----CGQPKVVVKAPDEETLIALLAHAKML   74 (117)
T ss_dssp             CCEEEEEEEEGGGCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHh----CCCeeEEEEcCCHHHHHHHHHHHHHC
Confidence            479999999999999  99999999999999999988 4444 4688887    99999999999999999999999999


Q ss_pred             CCCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           84 GIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        84 gi~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ||+|++|+     |+||||.|||||||+|++.||+||||||||
T Consensus        75 gl~~~~i~DAG~Tqi~~gt~TvlaigP~~~~~vd~itg~lkL~  117 (117)
T 1q7s_A           75 GLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY  117 (117)
T ss_dssp             TCCEEEEEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             CCCEEEEEECCCcccCCCCeEEEEeccCCHHHHHHhcCCCCCC
Confidence            99999998     599999999999999999999999999997

>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1

Probab=99.89  E-value=2.3e-23  Score=151.12  Aligned_cols=111  Identities=12%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcC----ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Q 042780            7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKD----DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNA   82 (122)
Q Consensus         7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~----~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~   82 (122)
                      +.|||||||+||.|    |++++||||+++++...+.+    +-.-..+..-|.+.||+++||++++ ++|.+|.++|.+
T Consensus         3 ~~K~viVv~~dL~~----g~~aN~aA~l~~gl~~~~~~~~G~~~~d~~g~~~~~~~~~p~~VL~a~~-~~L~~l~~~a~~   77 (135)
T 2gax_A            3 DTKIAVILRDDLAV----WQKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQ-EALRKIHQRSLE   77 (135)
T ss_dssp             SEEEEEEEETTSCH----HHHHHHHHHHHHHHHHHCGGGBCSCEECTTSCEECCCBSSCEEEEEECH-HHHHHHHHHHHH
T ss_pred             CcEEEEEEcCCChH----HHHHHHHHHHHHHHHHhChhhcCCcccCcccccccccCCCcEEEEEECH-HHHHHHHHHHHH
Confidence            47999999999966    59999999999999987621    1011233333456999999999998 899999999999


Q ss_pred             CCCCeEEEE-----------------EeCCCCceEEEEc-CCCCcchhhhhCCCCCCC
Q 042780           83 GGIAHKLWI-----------------EQPENIPTCLATK-PYPKSTVSLVFKKLKLCK  122 (122)
Q Consensus        83 ~gi~~~l~~-----------------e~~~gt~Tvlaig-P~~~~~i~~itg~LkLl~  122 (122)
                      .||++.+++                 |+++++.|++||| |+|++.||++||+|+|..
T Consensus        78 ~~l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~l~~~GI~l~Gp~k~VdklTg~L~L~~  135 (135)
T 2gax_A           78 RDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLHA  135 (135)
T ss_dssp             TTCCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEECC
T ss_pred             CCCcEEeccHHhhhCCCHHHHHHHHhcCCcccceEEEEEEECCHHHHHHHhCCCCCCC
Confidence            999999997                 6899999999999 899999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1q7sa_	117	c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens	6e-31
d3erja1	116	c.131.1.1 (A:2-117) Hypothetical protein AF2095 {A	2e-27
d1rlka_	116	c.131.1.1 (A:) Hypothetical protein TA0108 {Archae	7e-27

>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Bit1 (Cgi-147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 6e-31
 Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 9/118 (7%)

Query: 8   LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEV 67
               +V+R DL      G V  Q  HA+VSA    +                  KV ++ 
Sbjct: 3   YKMILVVRNDL--KMGKGKVAAQCSHAAVSAYKQIQRRNPE--MLKQWEYCGQPKVVVKA 58

Query: 68  KGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKL 120
             E  ++ L       G+   L       +      T L   P P   +  V   LKL
Sbjct: 59  PDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein AF2095
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 95.2 bits (237), Expect = 2e-27
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 12/118 (10%)

Query: 10  QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKG 69
           Q +V+R DL      G +  Q  HA++                         KV L+VK 
Sbjct: 4   QVIVVRDDL--KLSRGKLAVQVAHAAIIGYLKSDSSLRRKWLD-----EGQKKVVLKVKS 56

Query: 70  ETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
             +++ +  K  + G+   L       E P    T +   P  +  +  V   L L K
Sbjct: 57  LEELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLLK 114

>d1rlka_ c.131.1.1 (A:) Hypothetical protein TA0108 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein TA0108
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 94.1 bits (234), Expect = 7e-27
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 7   VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIW-SHKDDPHTLQYCSPQNINSMHKVTL 65
           V    + +R+DL      G +  Q  HA+V+    S K +                K+ +
Sbjct: 1   VKKMVIAVRKDL--DMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEW---YDEGQRKIVV 55

Query: 66  EVKGETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKL 120
           +V    +I+ +    ++ GI +++       +      TC+   P  +  +  +  K KL
Sbjct: 56  KVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKL 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1q7sa_	117	Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]	100.0
d3erja1	116	Hypothetical protein AF2095 {Archaeoglobus fulgidu	100.0
d1rlka_	116	Hypothetical protein TA0108 {Archaeon Thermoplasma	100.0
d2gaxa1	135	Hypothetical protein Atu0240 {Agrobacterium tumefa	98.54
d1hska1	194	Uridine diphospho-N-Acetylenolpyruvylglucosamine r	88.14
d1uxya1	198	Uridine diphospho-N-Acetylenolpyruvylglucosamine r	85.47
d2eyqa2	117	Transcription-repair coupling factor, TRCF {Escher	84.57

>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Bit1 (Cgi-147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-46  Score=263.74  Aligned_cols=110  Identities=25%  Similarity=0.232  Sum_probs=103.0

Q ss_pred             ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcC-C-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780            6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKD-D-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG   83 (122)
Q Consensus         6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~-~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~   83 (122)
                      +++|||||||+||+|  |+||++|||||||+++|..+++ + ..+.+|..    .||+||||+++|+++|++|.++|++.
T Consensus         1 ge~K~vivVR~DL~m--s~GKiaAQ~~HAav~~~~~~~~~~~~~~~~W~~----~g~~KIvl~v~~e~~l~~l~~~a~~~   74 (117)
T d1q7sa_           1 GEYKMILVVRNDLKM--GKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEY----CGQPKVVVKAPDEETLIALLAHAKML   74 (117)
T ss_dssp             CCEEEEEEEEGGGCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEEECCCCC--ChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCcEEEEecCCHHHHHHHHHHHHHC
Confidence            469999999999999  9999999999999999988843 3 34677777    99999999999999999999999999


Q ss_pred             CCCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           84 GIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        84 gi~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ||++++|+     |+||||.|||||||+|++.||+||||||||
T Consensus        75 ~l~~~~i~DAG~Tei~~gt~TvlaigP~~~~~id~itg~LkLy  117 (117)
T d1q7sa_          75 GLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY  117 (117)
T ss_dssp             TCCEEEEEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             CCCEEEEEcCCCcccCCCCeEEEEECCCCHHHHHHHhCCCCCC
Confidence            99999998     999999999999999999999999999998

>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein AF2095
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.2e-45  Score=261.39  Aligned_cols=109  Identities=25%  Similarity=0.314  Sum_probs=102.8

Q ss_pred             eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCC
Q 042780            7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIA   86 (122)
Q Consensus         7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~   86 (122)
                      .+|||||||+||+|  |+||++|||||||+.+|.+. +.+.+.+|.+    .||+||||+++||++|++|.++|++.||+
T Consensus         1 ~~K~vivvR~DL~M--s~GKiaAQ~~HAav~~~~~~-~~~~~~~W~~----~g~~KIvl~v~~e~~L~~l~~~a~~~~l~   73 (116)
T d3erja1           1 TLKQVIVVRDDLKL--SRGKLAVQVAHAAIIGYLKS-DSSLRRKWLD----EGQKKVVLKVKSLEELLGIKHKAESLGLV   73 (116)
T ss_dssp             CEEEEEEEESSSCC--CHHHHHHHHHHHHHHHHHHS-CHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHHTCC
T ss_pred             CeeEEEEEECCCCC--CcchHHHHHHHHHHHHHHHh-CcHHHHHHHh----CCceEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence            48999999999999  99999999999999999764 3456788988    99999999999999999999999999999


Q ss_pred             eEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCCC
Q 042780           87 HKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLCK  122 (122)
Q Consensus        87 ~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl~  122 (122)
                      +++|+     |+||||.|||||||+|++.||+|||||||||
T Consensus        74 ~~~i~DAG~Tei~~gt~TvlaigP~~~~~id~itg~LkLlk  114 (116)
T d3erja1          74 TGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLLK  114 (116)
T ss_dssp             EEEECCTTCSSSCTTCCCEEEEEEEEHHHHHHHHTTCCBCC
T ss_pred             EEEEEcCCCcccCCCCeEEEEECCCCHHHHHHHhCcCcccc
Confidence            99997     9999999999999999999999999999997

>d1rlka_ c.131.1.1 (A:) Hypothetical protein TA0108 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein TA0108
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.7e-45  Score=258.78  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=101.7

Q ss_pred             eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhc-CC-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780            8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHK-DD-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI   85 (122)
Q Consensus         8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~-~~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi   85 (122)
                      +|||||||+||+|  |+||+||||||||+++|..++ ++ ..+.+|..    .||+||||+++|+++|++|.++|++.||
T Consensus         2 ~KmvivVR~DL~M--s~GKiaAQ~~HAav~~~~~~~~~~~~~~~~W~~----~g~~KIvl~v~~e~~L~~l~~~a~~~~l   75 (116)
T d1rlka_           2 KKMVIAVRKDLDM--GKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYD----EGQRKIVVKVNDLDEIMEIKRMADSMGI   75 (116)
T ss_dssp             EEEEEEEESTTCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHHTC
T ss_pred             eeEEEEEeCCCCC--CcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHh----CCceEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            6999999999999  999999999999999998873 33 34678887    9999999999999999999999999999


Q ss_pred             CeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780           86 AHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC  121 (122)
Q Consensus        86 ~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl  121 (122)
                      ++++|+     |+||||.|||||||+|++.||+||||||||
T Consensus        76 ~~~~v~DAG~Tei~pgt~TvlaigP~~~~~id~itg~LkLL  116 (116)
T d1rlka_          76 VNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL  116 (116)
T ss_dssp             CEEEEECCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             CEEEEECCCCcccCCCCeEEEEECCCCHHHHHHHhCcCcCC
Confidence            999998     999999999999999999999999999997

>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein Atu0240
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.54  E-value=2.1e-07  Score=65.44  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=83.1

Q ss_pred             eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhc-------CChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHH
Q 042780            7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHK-------DDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEK   79 (122)
Q Consensus         7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~-------~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~   79 (122)
                      +.|.++|||.||    +.|.++-=++|-+++.-...-       .|.+=..|.   .+.+++=+||+.+ .++|.++.++
T Consensus         3 dtK~viVi~~~L----~~g~~lN~~A~L~~glg~~~peliG~~y~D~~G~~h~---~i~~~Pv~VL~a~-~~~L~~l~~~   74 (135)
T d2gaxa1           3 DTKIAVILRDDL----AVWQKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYN---PLSIQPIVVMATD-QEALRKIHQR   74 (135)
T ss_dssp             SEEEEEEEETTS----CHHHHHHHHHHHHHHHHHHCGGGBCSCEECTTSCEEC---CCBSSCEEEEEEC-HHHHHHHHHH
T ss_pred             ccEEEEEECCCC----HHHHHHHHHHHHHHHHhhcCccccCCcccCCCCCccc---ccCCCCEEEEECC-HHHHHHHHHH
Confidence            469999999999    889999999999988776541       122223333   2578999999996 6799999999


Q ss_pred             HHHCCCCeEEEE-----------------EeCCCCc--eEEEEcCCCCcchhhhhCCCCCCC
Q 042780           80 LNAGGIAHKLWI-----------------EQPENIP--TCLATKPYPKSTVSLVFKKLKLCK  122 (122)
Q Consensus        80 a~~~gi~~~l~~-----------------e~~~gt~--TvlaigP~~~~~i~~itg~LkLl~  122 (122)
                      |.+++|++...+                 +.++...  -.||+. +|+..||++||+|+|+.
T Consensus        75 al~~~i~~~~f~~~m~~t~~~~~~~~~~~~~~~~dl~~vGial~-G~kk~Vdklt~~l~Lh~  135 (135)
T d2gaxa1          75 SLERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALR-ADRKIVDKITKGAKLHA  135 (135)
T ss_dssp             HHHTTCCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEE-EEHHHHHHHTTTCEECC
T ss_pred             HhcCCCceeechHHHHhcCCHHHHHHHHhccChhhccEEEEEEE-CCHHHHHHHhcCCCCCC
Confidence            999999999997                 3344443  456665 68999999999999973

>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
domain: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.14  E-value=0.36  Score=33.64  Aligned_cols=45  Identities=7%  Similarity=0.043  Sum_probs=38.9

Q ss_pred             ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780           45 DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW   90 (122)
Q Consensus        45 ~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~   90 (122)
                      +..+.+|-. +...|..+.+++..|+++|.++.+.|+++++|..++
T Consensus        20 ~~~L~~~tt-~~vGG~a~~~v~p~s~~el~~~~~~a~~~~ip~~v~   64 (194)
T d1hska1          20 DEPLKRYTY-TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYL   64 (194)
T ss_dssp             EEEGGGTCT-TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcchhccE-eeeCeEEEEEEecCCHHHHHHHHHHhhhcccceEEe
Confidence            444667664 677999999999999999999999999999999765

>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
domain: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.47  E-value=0.88  Score=31.87  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780           55 QNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW   90 (122)
Q Consensus        55 ~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~   90 (122)
                      ....|..+...++.|+++|.++.+.++..++|..++
T Consensus         9 ~~igG~A~~~~~p~s~edl~~~l~~~~~~~~p~~vl   44 (198)
T d1uxya1           9 FGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLIL   44 (198)
T ss_dssp             TCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcCeEeeEEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence            567999999999999999999999999999998764

>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=84.57  E-value=0.4  Score=30.90  Aligned_cols=60  Identities=18%  Similarity=0.088  Sum_probs=47.4

Q ss_pred             hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEcCCCCcch
Q 042780           47 HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATKPYPKSTV  111 (122)
Q Consensus        47 ~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~---e~~~gt~TvlaigP~~~~~i  111 (122)
                      .+..|..    ....+|++-++++.....|.+.+++.||+...+.   ++.++. ..|.+||.....+
T Consensus        25 ~L~~~i~----~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~~~~~~~~-~~i~~~~l~~GF~   87 (117)
T d2eyqa2          25 ALRKFLE----TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG-RYLMIGAAEHGFV   87 (117)
T ss_dssp             HHHHHHT----TCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGGGCCTTC-CEEEECCCCSCEE
T ss_pred             HHHHHHH----hCCCeEEEEECCccHHHHHHHHHHHcCCCceEecChhhhcCce-EEEEEecCccccc
Confidence            3688886    5567899999999999999999999999987765   554444 4577898876653