Citrus Sinensis ID: 042788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MLNFELLKKDFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEEcccEEEEEEEccccccccccccccEEEEEEEcccccEEEEEEccccccccccEEEEEEEEcccccccccccccccccEEEEEccccccccccccccEEEEEEccccHHHHHHHHHHHHcccccccEEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEccccEEEEEEcccccccEcccccccEEEEEEEEcccEEEEEEEccccccccccEEEEEEEccccccHHHHHHHcccccEEEEEccccEEEEcEEEccEEEEEEEHHHHHHHHHHHHHHHHccccccEEEEEEEEEEHHHcccHHHHHHHHHHcHHHEEEEEEEEEcccccccEEccccHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MLNFELLKKDFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIkksrgsldpenfkefkltkrtpishntakfrfalpkstsilglpvgqhilcrgkdsegnevirpytpitldsdiGYFELVVKMypkgrmahhfremhegeylpvkgpkgrlkykvGQARAfgmiaggtgitpMFQLTRAilenpkdktnvHLIYANVTVGDILLKdeldsfatnspnRFKVYYVLSqptevwnggighVSKEMIqmhcptpapdiq
Flexible Loop (DISEMBL)
MLNFELLKKDFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSrgsldpenfkefkltkrtpishntAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPytpitldsdiGYFELVVKMYPKGRMAHHFRemhegeylpvkgpkgRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ
Low Complexity Region (SEG)
MLNFELLKKDFMQMQVSQaaffgllvavaamiitiavYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ
Disordered region (IsUnstruct)
*****LLKKDFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKS********FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ***********
Disordered Region (DISOPRED)
**NFELLKKDFMQMQVSQAAFFGLLVAVAAMIITIAV****************FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQM***T******
Disordered Region (DISEMBL)
MLNFELLKKDFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ
Disordered Region (DISPRO)
MLNFELLKKDFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNFELLKKDFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9ZNT1	281	NADH--cytochrome b5 reduc	yes	no	0.856	0.786	0.714	5e-94
Q6BUX2	284	NADH-cytochrome b5 reduct	yes	no	0.887	0.806	0.482	1e-59
Q59P03	294	NADH-cytochrome b5 reduct	N/A	no	0.930	0.816	0.456	1e-58
A3GF86	284	NADH-cytochrome b5 reduct	yes	no	0.891	0.809	0.458	4e-57
Q6CID0	281	NADH-cytochrome b5 reduct	yes	no	0.856	0.786	0.452	1e-56
Q54NC1	286	NADH-cytochrome b5 reduct	yes	no	0.813	0.734	0.490	2e-56
O74557	301	NADH-cytochrome b5 reduct	yes	no	0.868	0.744	0.458	2e-56
A5DQ25	284	NADH-cytochrome b5 reduct	N/A	no	0.844	0.767	0.481	1e-55
Q4X0B5	309	NADH-cytochrome b5 reduct	yes	no	0.934	0.779	0.437	4e-55
A1DHW1	309	NADH-cytochrome b5 reduct	N/A	no	0.934	0.779	0.437	4e-55

>sp|Q9ZNT1|NB5R1_ARATH NADH--cytochrome b5 reductase 1 OS=Arabidopsis thaliana GN=CBR1 PE=1 SV=1

 Score =  343 bits (881), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 158/221 (71%), Positives = 183/221 (82%)

Query: 38  YLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKD 97
           +L S KK R  LDPENFKEFKL KR  +SHN AKF F LP STS+LGLP+GQHI CRGKD
Sbjct: 31  FLTSSKKRRVCLDPENFKEFKLVKRHQLSHNVAKFVFELPTSTSVLGLPIGQHISCRGKD 90

Query: 98  SEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKV 157
            +G +VI+PYTP TLDSD+G FELV+KMYP+GRM+HHFREM  G++L VKGPKGR KY+ 
Sbjct: 91  GQGEDVIKPYTPTTLDSDVGRFELVIKMYPQGRMSHHFREMRVGDHLAVKGPKGRFKYQP 150

Query: 158 GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS 217
           GQ RAFGM+AGG+GITPMFQ+ RAILENP DKT VHLIYANVT  DILLK+EL+   TN 
Sbjct: 151 GQFRAFGMLAGGSGITPMFQVARAILENPTDKTKVHLIYANVTYDDILLKEELEGLTTNY 210

Query: 218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           P +FK++YVL+QP EVW+GG+G VSKEMIQ HCP PA DIQ
Sbjct: 211 PEQFKIFYVLNQPPEVWDGGVGFVSKEMIQTHCPAPASDIQ 251

Reductase transfering electrons from NADH to cytochrome b5. Required for the NADH-dependent electron transfer involved in the desaturation and hydroxylation of fatty acids and in the desaturation of sterol precursors. No activity with NADPH as electron donor.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 2EC: .EC: 2

>sp|Q6BUX2|NCB5R_DEBHA NADH-cytochrome b5 reductase 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CBR1 PE=3 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/232 (48%), Positives = 154/232 (66%), Gaps = 3/232 (1%)

Query: 22  FGLLVAVAAMIIT-IAVYLCSI-KKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKS 79
           F +   VAA+I + +A Y   + +K+   L P +F++F L ++T +SHNT  +RF LP+S
Sbjct: 9   FIIFATVAAIISSAVAYYFFQLSRKNAPVLKPNDFQKFPLIEKTRVSHNTCVYRFGLPRS 68

Query: 80  TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMH 139
           T  LGLP+GQHI   G      EV+R YTPI+ D ++GYF+L++K Y  G ++ H     
Sbjct: 69  TDRLGLPIGQHIAI-GATINDKEVVRSYTPISTDDELGYFDLLIKAYENGNISRHVESKK 127

Query: 140 EGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANV 199
            GE + ++GPKG   Y  G   +FGMIAGGTGITPM+Q+  AIL NP+DKT V L+YANV
Sbjct: 128 IGETIDIRGPKGFFTYTPGMVESFGMIAGGTGITPMYQILTAILRNPEDKTKVSLVYANV 187

Query: 200 TVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP 251
           T  DILLK+EL+  A   P+RFK+YYVL+ P E W GG+G V+ E++  H P
Sbjct: 188 TEDDILLKEELNKMAREHPDRFKIYYVLNTPPENWTGGVGFVTPEIMDKHLP 239

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q59P03|NCB5R_CANAL NADH-cytochrome b5 reductase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBR1 PE=3 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 157/243 (64%), Gaps = 3/243 (1%)

Query: 16  VSQAAFFGLLVAVAAMIITIAVY--LCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFR 73
           VS+   F +   VA +I     Y  L   KK    L P+ F++F L ++  +SHN+A +R
Sbjct: 13  VSEPNPFIVFATVATIISAFIGYYFLQQSKKHTPVLKPDEFQKFPLIEKIRVSHNSAIYR 72

Query: 74  FALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133
           F LPKST  LGLP+GQHI   G   +G EV+R YTPI+ D  +G+F+L++K Y  G ++ 
Sbjct: 73  FGLPKSTDRLGLPIGQHISI-GATIDGKEVVRSYTPISTDDQLGHFDLLIKTYENGNISR 131

Query: 134 HFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVH 193
           H    + GE++ ++GPKG   Y     ++FGMIAGGTGI PM+Q+  AIL+NP+DKT +H
Sbjct: 132 HVAGKNVGEHIEIRGPKGFFTYTPNMVKSFGMIAGGTGIAPMYQIITAILKNPEDKTKIH 191

Query: 194 LIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253
           L+YANVT  DILLK+ELD+FA   P+R K++YVL++    W G +G V+ E+I  H P  
Sbjct: 192 LVYANVTESDILLKEELDNFAARHPDRLKIHYVLNEAPANWQGSVGFVTPEIIDTHLPKA 251

Query: 254 APD 256
           + D
Sbjct: 252 SND 254

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|A3GF86|NCB5R_PICST NADH-cytochrome b5 reductase 1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=CBR1 PE=3 SV=2

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/231 (45%), Positives = 147/231 (63%), Gaps = 1/231 (0%)

Query: 26  VAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGL 85
           +A+      I  ++   KK+   L P+ F++F L ++T +SHN++ +RF LPKST  LGL
Sbjct: 15  IAIIISTFVIFYFVQQSKKNTPVLKPDTFQKFPLIEKTRVSHNSSVYRFGLPKSTDRLGL 74

Query: 86  PVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLP 145
           P+GQHI   G    G EV+R YTPI+ D ++GYF+L++K Y  G ++ H      GEY+ 
Sbjct: 75  PIGQHI-SIGATIGGKEVVRSYTPISTDDELGYFDLLIKTYENGNISKHVDSKKVGEYVE 133

Query: 146 VKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDIL 205
           ++GPKG   Y     ++FGMIAGGTGI PM+Q+  AIL NP DKT + LIYANVT  DIL
Sbjct: 134 IRGPKGFFTYTPNMVKSFGMIAGGTGIAPMYQIITAILRNPADKTKISLIYANVTESDIL 193

Query: 206 LKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
           LK ELD +A   P+ F V+YVL++  E W G +G V+ E+I    P  + D
Sbjct: 194 LKSELDKWAEEHPDNFSVHYVLNEAPENWKGSVGFVTPEIIDSKLPKASDD 244

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q6CID0|NCB5R_KLULA NADH-cytochrome b5 reductase 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CBR1 PE=3 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/232 (45%), Positives = 151/232 (65%), Gaps = 11/232 (4%)

Query: 37  VYLCSI---------KKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPV 87
           V LC+I         KK +  LD E  +EF L  +T ++HNTA +RF LPKST +LGLP+
Sbjct: 13  VLLCTIIAVVLEYQSKKDKPVLDKEKLQEFPLVAKTVLTHNTAIYRFGLPKSTQVLGLPI 72

Query: 88  GQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKMYPKGRMAHHFREMHEGEYLPV 146
           GQHI  +  +  G +++R YTP +LDSD +G+FEL++K Y KG ++ HF +++ G+ + V
Sbjct: 73  GQHISVQA-NINGKDILRSYTPTSLDSDAVGHFELLIKSYEKGNISKHFAQLNIGDKIKV 131

Query: 147 KGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILL 206
           +GPKG   Y+       GMIAGGTGI PM+Q+ ++I  N  DKT V L+Y N T  DILL
Sbjct: 132 RGPKGFYHYQPNMNEEIGMIAGGTGIAPMYQIMKSIFANDSDKTKVSLVYGNQTEEDILL 191

Query: 207 KDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           K ELD+F    P++FKVYY+L +  E W GG+G+++ + ++   P PA  +Q
Sbjct: 192 KKELDAFVERKPDQFKVYYLLDKAPEAWTGGVGYITVDTMKERLPAPAEGVQ 243

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q54NC1|NCB5R_DICDI NADH-cytochrome b5 reductase 1 OS=Dictyostelium discoideum GN=cyb5r1 PE=3 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/212 (49%), Positives = 146/212 (68%), Gaps = 2/212 (0%)

Query: 43  KKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNE 102
           K+   +LDP+ +++F+L ++  ++HNT  FRFALP    ILGLP+GQHI  R     G E
Sbjct: 43  KQVEKALDPQEYRKFQLKEKFIVNHNTRIFRFALPNEDDILGLPIGQHISLRAVVG-GKE 101

Query: 103 VIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARA 162
           V RPYTPI+ D + GYF+L++K+Y KG M+ +   M  G+ + VKGPKG+  Y+    ++
Sbjct: 102 VYRPYTPISSDEERGYFDLLIKVYEKGAMSGYVDNMFIGDSIEVKGPKGKFNYQPNMRKS 161

Query: 163 FGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFK 222
            GM+AGGTGITPM Q+ +AIL+NP DKT + L++ N+T  DILLK ELD  A   P +FK
Sbjct: 162 IGMLAGGTGITPMLQVIKAILKNPSDKTEISLVFGNITEEDILLKKELDELAEKHP-QFK 220

Query: 223 VYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA 254
           VYYVL+ P + W  G+G VSKE+I+   P+P+
Sbjct: 221 VYYVLNNPPKGWTQGVGFVSKEIIESRLPSPS 252

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|O74557|NCB5R_SCHPO NADH-cytochrome b5 reductase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbr1 PE=3 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 156/229 (68%), Gaps = 5/229 (2%)

Query: 33  ITIAVYLCSIKKSRGSLD---PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQ 89
           I +A  L   K  RG +     +  ++F+L+ +  ++HNTA +RF LP++  +LGLP+GQ
Sbjct: 37  IVVAFSLGFHKFWRGRVRKVLSDKIQQFELSDKAVLNHNTAIYRFRLPRANDVLGLPIGQ 96

Query: 90  HILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGP 149
           H+     D +G E  R YTP++ D+D GYF+L+VK YP G+++  F E+  G+ + V+GP
Sbjct: 97  HLKVF-VDVDGKEYSRSYTPLSSDADKGYFDLLVKSYPNGKVSKKFSELKIGDTIGVRGP 155

Query: 150 KGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209
           KG  K++ G AR FGMIAGGTGITPM Q+ RA+L N +D T + L+YANV+ GDI+L+DE
Sbjct: 156 KGNWKHRTGLARHFGMIAGGTGITPMLQIIRAVLSNFEDPTEITLLYANVSEGDIVLRDE 215

Query: 210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           +D+ A   P RF V+YVL+ P E W G +G V++E+I+ H P P+P+ +
Sbjct: 216 IDALAKKDP-RFTVHYVLNNPPENWKGSVGFVTQELIKAHFPAPSPETK 263

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|A5DQ25|NCB5R_PICGU NADH-cytochrome b5 reductase 1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=CBR1 PE=3 SV=1

 Score =  216 bits (550), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/220 (48%), Positives = 143/220 (65%), Gaps = 2/220 (0%)

Query: 38  YLCSIKKSRGS-LDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGK 96
           Y+  + K  G  L P+ F++F L ++T +SHNT  +RF LPKST  LGLP+GQHI   G 
Sbjct: 26  YVVKLNKKNGPVLKPDVFQKFPLIEKTRLSHNTCIYRFGLPKSTDRLGLPIGQHISI-GA 84

Query: 97  DSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYK 156
              G EV+R YTPI+ D ++GYF+L++K Y +G ++ H      G+++ V+GPKG   Y 
Sbjct: 85  TINGKEVVRSYTPISRDDELGYFDLLIKTYEQGNISRHVDSKSVGDHIEVRGPKGFFTYT 144

Query: 157 VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
                  GMIAGGTGI PM+Q+  AIL NP DKT + L+YANVT  DILL+ ELD FA  
Sbjct: 145 PNMVEHLGMIAGGTGIAPMYQVLTAILTNPDDKTKISLVYANVTEEDILLRAELDLFAKE 204

Query: 217 SPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
            P+RFKV+YVL+   E WNG +G V+ E+++ H P    D
Sbjct: 205 HPDRFKVHYVLNNAPENWNGSVGFVTPEIMEKHLPNKDQD 244

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q4X0B5|NCB5R_ASPFU NADH-cytochrome b5 reductase 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cbr1 PE=3 SV=2

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/249 (43%), Positives = 158/249 (63%), Gaps = 8/249 (3%)

Query: 16  VSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFA 75
           + +  F    VAV A++  + ++     K R  L+P  F+EF L ++  +SHN   +RFA
Sbjct: 25  IVKKEFVPYAVAVTAILAGLKLFTGG-NKPRKVLNPTEFQEFVLKEKIDVSHNVCIYRFA 83

Query: 76  LPKSTSILGLPVGQHI-LCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH 134
           LP+ T ILGLP+GQHI L    + +  EV+R YTPI+ D++ GYF+L+VK YP+G ++ +
Sbjct: 84  LPRPTDILGLPIGQHISLAATIEGQPKEVVRSYTPISSDNEAGYFDLLVKAYPQGNISKY 143

Query: 135 FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN-PK----DK 189
              +  G+ + V+GPKG + Y     R  GMIAGGTGITPM Q+ +A++ N P+    D 
Sbjct: 144 LTTLKIGDTMKVRGPKGAMVYTPNMCRHIGMIAGGTGITPMLQIIKAVIRNRPRNGGNDT 203

Query: 190 TNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249
           T + LI+ANV   DILLK+ELD  A   P+ F +YYVL+ P + W GG+G V+ EMI+ H
Sbjct: 204 TKLDLIFANVNPDDILLKEELDMLAAEDPD-FNIYYVLNNPPQGWTGGVGFVTPEMIKEH 262

Query: 250 CPTPAPDIQ 258
            P PA D++
Sbjct: 263 LPAPASDVK 271

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|A1DHW1|NCB5R_NEOFI NADH-cytochrome b5 reductase 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=cbr1 PE=3 SV=2

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/249 (43%), Positives = 158/249 (63%), Gaps = 8/249 (3%)

Query: 16  VSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFA 75
           + +  F    VA+ A++  + ++     K R  L+P  F+EF L ++T ISHN   +RFA
Sbjct: 25  IVKKEFVPYAVALTAILAGLKLFTGG-SKPRKVLNPTEFQEFVLKEKTDISHNVCIYRFA 83

Query: 76  LPKSTSILGLPVGQHI-LCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH 134
           LP+   ILGLP+GQHI L    + +  EV+R YTPI+ D++ GYF+L+VK YP+G ++ +
Sbjct: 84  LPRPADILGLPIGQHISLAATIEGQPKEVVRSYTPISSDNEAGYFDLLVKAYPQGNISKY 143

Query: 135 FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN-PK----DK 189
              +  G+ + V+GPKG + Y     R  GMIAGGTGITPM Q+ +A++ N P+    D 
Sbjct: 144 LTTLKIGDTMKVRGPKGAMVYTPNMCRHIGMIAGGTGITPMLQIIKAVIRNRPRNGGNDT 203

Query: 190 TNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249
           T + LI+ANV   DILLK+ELD  A   P+ F +YYVL+ P + W GG+G V+ EMI+ H
Sbjct: 204 TKLDLIFANVNPDDILLKEELDKLAAEDPD-FNIYYVLNNPPQGWTGGVGFVTPEMIKEH 262

Query: 250 CPTPAPDIQ 258
            P PA D++
Sbjct: 263 LPAPASDVK 271

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
224131714	278	predicted protein [Populus trichocarpa]	0.953	0.884	0.699	1e-100
296085353	289	unnamed protein product [Vitis vinifera]	0.914	0.816	0.711	1e-99
225449782	292	PREDICTED: NADH-cytochrome b5 reductase	0.914	0.808	0.711	2e-99
55979111	280	NADH:cytochrome b5 reductase [Vernicia f	0.957	0.882	0.68	4e-98
255573283	279	NADH-cytochrome B5 reductase, putative [	0.949	0.878	0.682	1e-97
225436003	278	PREDICTED: NADH-cytochrome b5 reductase	0.910	0.845	0.719	4e-97
356504288	278	PREDICTED: NADH-cytochrome b5 reductase	0.957	0.888	0.674	4e-96
255637950	278	unknown [Glycine max]	0.957	0.888	0.674	5e-96
224110072	280	predicted protein [Populus trichocarpa]	0.957	0.882	0.681	4e-95
449437668	280	PREDICTED: NADH--cytochrome b5 reductase	0.949	0.875	0.672	4e-95

>gi|224131714|ref|XP_002328090.1| predicted protein [Populus trichocarpa] gi|222837605|gb|EEE75970.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 199/246 (80%)

Query: 13  QMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKF 72
            +Q  +A   G+ VA+ A+  + A Y    KK +G LDPENFKEFKL KRT +SHN AKF
Sbjct: 3   NLQSHRAEMIGIAVALVAIGASTAFYFYITKKPKGCLDPENFKEFKLVKRTELSHNVAKF 62

Query: 73  RFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132
           +FALPK  S+LGLP+GQH+ CRGKDS G EVI+PYTP TLDSD+G FELV+KMYP+GRM+
Sbjct: 63  KFALPKPNSVLGLPIGQHMSCRGKDSAGEEVIKPYTPTTLDSDLGCFELVIKMYPQGRMS 122

Query: 133 HHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNV 192
           HHFREM EG+YL VKGPKGR KY+  Q RAFGMIAGGTGITPMFQ+TRAILENP DKTN+
Sbjct: 123 HHFREMREGDYLAVKGPKGRFKYQPNQVRAFGMIAGGTGITPMFQVTRAILENPNDKTNI 182

Query: 193 HLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252
           HLIYANVT  DILLK+E+D+ AT  PNRFKVYYVL+QP E W GGIG +SKEMIQ HCP 
Sbjct: 183 HLIYANVTYEDILLKEEIDNLATTFPNRFKVYYVLNQPPEGWEGGIGFISKEMIQSHCPP 242

Query: 253 PAPDIQ 258
           PA D+Q
Sbjct: 243 PAADVQ 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085353|emb|CBI29085.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 197/236 (83%)

Query: 23  GLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSI 82
           G  V +AA+ +    +    +K +G LDPE F++FKL ++T ISHN  +FRFALP  TS+
Sbjct: 24  GFAVGLAAVGLAAVYFFYGRRKPKGCLDPERFQDFKLVQKTRISHNVGRFRFALPTPTSV 83

Query: 83  LGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGE 142
            GLPVGQHI+CRGKD +G EVIRPYTPITLDSD+G++ELVVKMYPKG+M+HHFR+M EG+
Sbjct: 84  FGLPVGQHIICRGKDDQGAEVIRPYTPITLDSDVGFYELVVKMYPKGQMSHHFRKMREGD 143

Query: 143 YLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVG 202
            L VKGP+GRL YK GQA+AFGM+AGGTGITPMFQLTRAILENPKDKTNVHLIYAN++  
Sbjct: 144 TLAVKGPRGRLIYKPGQAKAFGMLAGGTGITPMFQLTRAILENPKDKTNVHLIYANISYD 203

Query: 203 DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           DILLKDELD FA   PNRFKV+YVLSQP E WNGGIGH+SKEMI+ HCP PAPDIQ
Sbjct: 204 DILLKDELDGFARKFPNRFKVFYVLSQPPEAWNGGIGHISKEMIEKHCPAPAPDIQ 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449782|ref|XP_002271202.1| PREDICTED: NADH-cytochrome b5 reductase 1-like [Vitis vinifera]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 197/236 (83%)

Query: 23  GLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSI 82
           G  V +AA+ +    +    +K +G LDPE F++FKL ++T ISHN  +FRFALP  TS+
Sbjct: 27  GFAVGLAAVGLAAVYFFYGRRKPKGCLDPERFQDFKLVQKTRISHNVGRFRFALPTPTSV 86

Query: 83  LGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGE 142
            GLPVGQHI+CRGKD +G EVIRPYTPITLDSD+G++ELVVKMYPKG+M+HHFR+M EG+
Sbjct: 87  FGLPVGQHIICRGKDDQGAEVIRPYTPITLDSDVGFYELVVKMYPKGQMSHHFRKMREGD 146

Query: 143 YLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVG 202
            L VKGP+GRL YK GQA+AFGM+AGGTGITPMFQLTRAILENPKDKTNVHLIYAN++  
Sbjct: 147 TLAVKGPRGRLIYKPGQAKAFGMLAGGTGITPMFQLTRAILENPKDKTNVHLIYANISYD 206

Query: 203 DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           DILLKDELD FA   PNRFKV+YVLSQP E WNGGIGH+SKEMI+ HCP PAPDIQ
Sbjct: 207 DILLKDELDGFARKFPNRFKVFYVLSQPPEAWNGGIGHISKEMIEKHCPAPAPDIQ 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55979111|gb|AAV69019.1| NADH:cytochrome b5 reductase [Vernicia fordii] gi|55979115|gb|AAV69021.1| NADH:cytochrome b5 reductase [Vernicia fordii]

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 170/250 (68%), Positives = 200/250 (80%), Gaps = 3/250 (1%)

Query: 12  MQMQVSQAAFFGLLVAVAAMIITI---AVYLCSIKKSRGSLDPENFKEFKLTKRTPISHN 68
           M ++  Q     +LV VA  ++ I   AV+L S KK +G LDPENFK+FKL  RT +SHN
Sbjct: 1   MDLEFLQTLDVQILVGVAVAVLAIGIGAVFLFSSKKPKGCLDPENFKDFKLVNRTQLSHN 60

Query: 69  TAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK 128
            AKF FALP  TS+LGLP+GQHI CRGKDS+G EVI+PYTP TLDSD+G+FELV+KMYP+
Sbjct: 61  VAKFSFALPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ 120

Query: 129 GRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKD 188
           GRM+HHFREM  G+YL VKGPKGR +Y+ GQ RAFGM+AGG+GITPMFQ+ RAILENP D
Sbjct: 121 GRMSHHFREMRVGDYLSVKGPKGRFRYQPGQVRAFGMLAGGSGITPMFQVARAILENPND 180

Query: 189 KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQM 248
           KT V+LIYANVT  DILLK ELD  A N P+RFKVYYVL+QP EVW+GG+G VSKEMI+ 
Sbjct: 181 KTKVYLIYANVTYEDILLKQELDGLAANYPDRFKVYYVLNQPPEVWDGGVGFVSKEMIEN 240

Query: 249 HCPTPAPDIQ 258
           HCP PA DIQ
Sbjct: 241 HCPAPASDIQ 250

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573283|ref|XP_002527570.1| NADH-cytochrome B5 reductase, putative [Ricinus communis] gi|223533062|gb|EEF34822.1| NADH-cytochrome B5 reductase, putative [Ricinus communis]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/246 (68%), Positives = 198/246 (80%), Gaps = 1/246 (0%)

Query: 14  MQVSQAAFFGLLVAVAAMIITIAVYL-CSIKKSRGSLDPENFKEFKLTKRTPISHNTAKF 72
           +Q  +A    + VA+ A+    A Y   + KK +G LDPENFKEFKL KRT +SHN A F
Sbjct: 4   LQSHKAEMISIAVALLAVGAGTAYYFYLTSKKPKGCLDPENFKEFKLVKRTELSHNVASF 63

Query: 73  RFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132
           +FALP  TS+LGLP+GQH+ CRGKDS G +V++PYTP TLDSD+GYFELV+KMYPKGRM+
Sbjct: 64  KFALPLPTSVLGLPIGQHMSCRGKDSLGEDVVKPYTPTTLDSDVGYFELVIKMYPKGRMS 123

Query: 133 HHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNV 192
           HHFREM EG+YL VKGPKGR KY+  Q RAFGM+AGGTGITPMFQ+ RAILENP DKTN+
Sbjct: 124 HHFREMREGDYLAVKGPKGRFKYQPNQVRAFGMLAGGTGITPMFQVARAILENPSDKTNI 183

Query: 193 HLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252
           HLIYANVT GDILLK+ELD+ A N PNRF VYYVL++P E W+GG+G VSKEMIQ HCP 
Sbjct: 184 HLIYANVTYGDILLKEELDNLAHNFPNRFSVYYVLNEPPEGWDGGVGFVSKEMIQHHCPP 243

Query: 253 PAPDIQ 258
           PA D+Q
Sbjct: 244 PASDVQ 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436003|ref|XP_002273225.1| PREDICTED: NADH-cytochrome b5 reductase 1 [Vitis vinifera] gi|296083963|emb|CBI24351.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 169/235 (71%), Positives = 194/235 (82%)

Query: 24  LLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSIL 83
           + VA+AA+    A Y   IKK +G LDPENFKEFKL KRT +SHN AKF FALP  TS+L
Sbjct: 14  IAVALAAIGAGTAYYFYFIKKPKGCLDPENFKEFKLIKRTQLSHNVAKFIFALPTPTSVL 73

Query: 84  GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEY 143
           GLP+GQH+ C+GKDS G +V++PYTP TLDSD+GYFELV+KMYP+GRM+HHFREM EG+Y
Sbjct: 74  GLPIGQHMSCKGKDSLGEDVVKPYTPTTLDSDLGYFELVIKMYPQGRMSHHFREMCEGDY 133

Query: 144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGD 203
           L VKGPKGR KY+ GQ  AFGM+AGGTGITPMFQ+TRAILENP D T VHLIYANVT  D
Sbjct: 134 LAVKGPKGRFKYQPGQVIAFGMLAGGTGITPMFQVTRAILENPSDNTKVHLIYANVTYED 193

Query: 204 ILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           ILLK+ELD+FA N PNRF VYYVL+QP E WNGG+G VSKEMIQ HCP PA +IQ
Sbjct: 194 ILLKEELDNFAANFPNRFTVYYVLNQPPEGWNGGVGFVSKEMIQTHCPPPATNIQ 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504288|ref|XP_003520929.1| PREDICTED: NADH-cytochrome b5 reductase 1-like [Glycine max]

 Score =  357 bits (915), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 168/249 (67%), Positives = 198/249 (79%), Gaps = 2/249 (0%)

Query: 10  DFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNT 69
           DF+Q Q +Q      +      I   AVYL S KK++G LDPENFK FKL KR  +SHN 
Sbjct: 2   DFLQAQENQILV--GVAVAVVAIGLGAVYLYSSKKTKGCLDPENFKAFKLVKRAQLSHNV 59

Query: 70  AKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKG 129
           AKF FALP  TS+LGLP+GQHI CRGKD++G EVI+PYTP TLDSD+G+FELV+KMYP+G
Sbjct: 60  AKFTFALPTPTSVLGLPIGQHISCRGKDAQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG 119

Query: 130 RMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDK 189
           RM+HHFREM  G+YL VKGPKGR KY+ G+ RAFGM+AGG+GITPMFQ+ RAILENP D+
Sbjct: 120 RMSHHFREMRVGDYLSVKGPKGRFKYQPGEVRAFGMLAGGSGITPMFQVARAILENPNDR 179

Query: 190 TNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249
           T VHLIYANVT  DILLK+ELD  A+N P+RFK+YYVL+QP EVW+GG G VSKEMIQ H
Sbjct: 180 TKVHLIYANVTYEDILLKEELDGLASNYPDRFKIYYVLNQPPEVWDGGEGFVSKEMIQTH 239

Query: 250 CPTPAPDIQ 258
           CP PA DI+
Sbjct: 240 CPAPAQDIK 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637950|gb|ACU19291.1| unknown [Glycine max]

 Score =  356 bits (914), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 168/249 (67%), Positives = 198/249 (79%), Gaps = 2/249 (0%)

Query: 10  DFMQMQVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNT 69
           DF+Q Q +Q      +      I   AVYL S KK++G LDPENFK FKL KR  +SHN 
Sbjct: 2   DFLQAQENQILV--GVAVAVVAIGLGAVYLYSSKKTKGCLDPENFKAFKLVKRAQLSHNV 59

Query: 70  AKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKG 129
           AKF FALP  TS+LGLP+GQHI CRGKD++G EVI+PYTP TLDSD+G+FELV+KMYP+G
Sbjct: 60  AKFTFALPTPTSVLGLPIGQHISCRGKDAQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG 119

Query: 130 RMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDK 189
           RM+HHFREM  G+YL VKGPKGR KY+ G+ RAFGM+AGG+GITPMFQ+ RAILENP D+
Sbjct: 120 RMSHHFREMRVGDYLSVKGPKGRFKYQPGEVRAFGMLAGGSGITPMFQVARAILENPNDR 179

Query: 190 TNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249
           T VHLIYANVT  DILLK+ELD  A+N P+RFK+YYVL+QP EVW+GG G VSKEMIQ H
Sbjct: 180 TKVHLIYANVTYEDILLKEELDGLASNYPDRFKIYYVLNQPPEVWDGGEGFVSKEMIQTH 239

Query: 250 CPTPAPDIQ 258
           CP PA DI+
Sbjct: 240 CPAPAQDIK 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110072|ref|XP_002315404.1| predicted protein [Populus trichocarpa] gi|222864444|gb|EEF01575.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/251 (68%), Positives = 197/251 (78%), Gaps = 4/251 (1%)

Query: 10  DFMQMQVSQAAFFGLLVAVAAM--IITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISH 67
           DFM +    A   G+L+A+ ++  I   + Y    +K +G LDP+ FKEFKL K+T IS 
Sbjct: 2   DFMPL--PSADVLGVLIAIFSVTAIAAASSYYFLSRKPKGCLDPQKFKEFKLIKKTQISP 59

Query: 68  NTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYP 127
           + A+FRF+LP   S+LGLPVG H++CRGKDSEG EV RPYTPITLDS  GYFELVVKMYP
Sbjct: 60  DVARFRFSLPTPKSVLGLPVGTHVVCRGKDSEGQEVTRPYTPITLDSQAGYFELVVKMYP 119

Query: 128 KGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPK 187
           KGRM+HH+REM EG+YL VKGP+GR  YK GQ RAFGMIAGG+GITPMFQLT AILENPK
Sbjct: 120 KGRMSHHYREMREGDYLAVKGPQGRFNYKPGQVRAFGMIAGGSGITPMFQLTGAILENPK 179

Query: 188 DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247
           DKT V LIYAN T  DILLK++LD FAT  PNRFKVYYVLSQP E W+GG GHVSKEMIQ
Sbjct: 180 DKTIVRLIYANTTFEDILLKEDLDDFATKFPNRFKVYYVLSQPPEAWSGGGGHVSKEMIQ 239

Query: 248 MHCPTPAPDIQ 258
            HCP PAPDI+
Sbjct: 240 NHCPPPAPDIR 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437668|ref|XP_004136613.1| PREDICTED: NADH--cytochrome b5 reductase 1-like [Cucumis sativus]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 168/250 (67%), Positives = 201/250 (80%), Gaps = 5/250 (2%)

Query: 14  MQVSQAAFFGLLVAVAAMIITI---AVYLCSIKK--SRGSLDPENFKEFKLTKRTPISHN 68
           M+V QA    +L+ +AA ++ I   AV+L S +K  SR  LDPE FKEFKL KRT +SHN
Sbjct: 1   MEVLQALDSQVLIGLAAALVAIVVGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHN 60

Query: 69  TAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK 128
            AKF F LPK+ SILGLP+GQH+ CRGKDS+G EVI+ YTP TLDSD+GYFELV+KMYP+
Sbjct: 61  VAKFTFILPKTDSILGLPIGQHLSCRGKDSQGEEVIKSYTPTTLDSDVGYFELVIKMYPQ 120

Query: 129 GRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKD 188
           GRM+HHFREM  GE L VKGPKGR KY+ GQ  AFGM+AGG+GITPM+Q++RAILENP D
Sbjct: 121 GRMSHHFREMRLGESLAVKGPKGRFKYQPGQVSAFGMLAGGSGITPMYQVSRAILENPDD 180

Query: 189 KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQM 248
           KT VHLIYANVT+ DILLK+ELD  A   P+RFK+YYVL+QP EVW+GG+G VSKEMI+ 
Sbjct: 181 KTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKA 240

Query: 249 HCPTPAPDIQ 258
           HCP PA DI+
Sbjct: 241 HCPAPAADIK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2176001	281	CBR "NADH:cytochrome B5 reduct	0.856	0.786	0.714	1.3e-86
CGD|CAL0001574	294	CBR1 [Candida albicans (taxid:	0.844	0.741	0.474	1.8e-55
UNIPROTKB|Q59P03	294	CBR1 "NADH-cytochrome b5 reduc	0.844	0.741	0.474	1.8e-55
DICTYBASE|DDB_G0285399	286	cyb5r1 "NADH-cytochrome b5 red	0.813	0.734	0.490	7e-54
POMBASE|SPCC970.03	301	SPCC970.03 "cytochrome b5 redu	0.786	0.674	0.482	3.8e-53
ASPGD|ASPL0000000398	310	AN6366 [Emericella nidulans (t	0.829	0.690	0.475	8.3e-51
UNIPROTKB|A4R935	309	CBR1 "NADH-cytochrome b5 reduc	0.829	0.692	0.466	2.9e-48
TAIR|locus:2147680	328	AT5G20080 "AT5G20080" [Arabido	0.841	0.661	0.444	1.4e-46
SGD|S000001305	284	CBR1 "Microsomal cytochrome b	0.821	0.746	0.414	5.6e-45
ASPGD|ASPL0000017615	510	AN3862 [Emericella nidulans (t	0.813	0.411	0.419	2.4e-44

TAIR|locus:2176001 CBR "NADH:cytochrome B5 reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 158/221 (71%), Positives = 183/221 (82%)

Query:    38 YLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKD 97
             +L S KK R  LDPENFKEFKL KR  +SHN AKF F LP STS+LGLP+GQHI CRGKD
Sbjct:    31 FLTSSKKRRVCLDPENFKEFKLVKRHQLSHNVAKFVFELPTSTSVLGLPIGQHISCRGKD 90

Query:    98 SEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKV 157
              +G +VI+PYTP TLDSD+G FELV+KMYP+GRM+HHFREM  G++L VKGPKGR KY+ 
Sbjct:    91 GQGEDVIKPYTPTTLDSDVGRFELVIKMYPQGRMSHHFREMRVGDHLAVKGPKGRFKYQP 150

Query:   158 GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS 217
             GQ RAFGM+AGG+GITPMFQ+ RAILENP DKT VHLIYANVT  DILLK+EL+   TN 
Sbjct:   151 GQFRAFGMLAGGSGITPMFQVARAILENPTDKTKVHLIYANVTYDDILLKEELEGLTTNY 210

Query:   218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
             P +FK++YVL+QP EVW+GG+G VSKEMIQ HCP PA DIQ
Sbjct:   211 PEQFKIFYVLNQPPEVWDGGVGFVSKEMIQTHCPAPASDIQ 251

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

GO:0022900 "electron transport chain" evidence=IDA

CGD|CAL0001574 CBR1 [Candida albicans (taxid:5476)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 104/219 (47%), Positives = 148/219 (67%)

Query:    38 YLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKD 97
             +L   KK    L P+ F++F L ++  +SHN+A +RF LPKST  LGLP+GQHI   G  
Sbjct:    37 FLQQSKKHTPVLKPDEFQKFPLIEKIRVSHNSAIYRFGLPKSTDRLGLPIGQHISI-GAT 95

Query:    98 SEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKV 157
              +G EV+R YTPI+ D  +G+F+L++K Y  G ++ H    + GE++ ++GPKG   Y  
Sbjct:    96 IDGKEVVRSYTPISTDDQLGHFDLLIKTYENGNISRHVAGKNVGEHIEIRGPKGFFTYTP 155

Query:   158 GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS 217
                ++FGMIAGGTGI PM+Q+  AIL+NP+DKT +HL+YANVT  DILLK+ELD+FA   
Sbjct:   156 NMVKSFGMIAGGTGIAPMYQIITAILKNPEDKTKIHLVYANVTESDILLKEELDNFAARH 215

Query:   218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
             P+R K++YVL++    W G +G V+ E+I  H P  + D
Sbjct:   216 PDRLKIHYVLNEAPANWQGSVGFVTPEIIDTHLPKASND 254

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|Q59P03 CBR1 "NADH-cytochrome b5 reductase 1" [Candida albicans SC5314 (taxid:237561)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 104/219 (47%), Positives = 148/219 (67%)

Query:    38 YLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKD 97
             +L   KK    L P+ F++F L ++  +SHN+A +RF LPKST  LGLP+GQHI   G  
Sbjct:    37 FLQQSKKHTPVLKPDEFQKFPLIEKIRVSHNSAIYRFGLPKSTDRLGLPIGQHISI-GAT 95

Query:    98 SEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKV 157
              +G EV+R YTPI+ D  +G+F+L++K Y  G ++ H    + GE++ ++GPKG   Y  
Sbjct:    96 IDGKEVVRSYTPISTDDQLGHFDLLIKTYENGNISRHVAGKNVGEHIEIRGPKGFFTYTP 155

Query:   158 GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS 217
                ++FGMIAGGTGI PM+Q+  AIL+NP+DKT +HL+YANVT  DILLK+ELD+FA   
Sbjct:   156 NMVKSFGMIAGGTGIAPMYQIITAILKNPEDKTKIHLVYANVTESDILLKEELDNFAARH 215

Query:   218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
             P+R K++YVL++    W G +G V+ E+I  H P  + D
Sbjct:   216 PDRLKIHYVLNEAPANWQGSVGFVTPEIIDTHLPKASND 254

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0285399 cyb5r1 "NADH-cytochrome b5 reductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 104/212 (49%), Positives = 146/212 (68%)

Query:    43 KKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNE 102
             K+   +LDP+ +++F+L ++  ++HNT  FRFALP    ILGLP+GQHI  R     G E
Sbjct:    43 KQVEKALDPQEYRKFQLKEKFIVNHNTRIFRFALPNEDDILGLPIGQHISLRAVVG-GKE 101

Query:   103 VIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARA 162
             V RPYTPI+ D + GYF+L++K+Y KG M+ +   M  G+ + VKGPKG+  Y+    ++
Sbjct:   102 VYRPYTPISSDEERGYFDLLIKVYEKGAMSGYVDNMFIGDSIEVKGPKGKFNYQPNMRKS 161

Query:   163 FGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFK 222
              GM+AGGTGITPM Q+ +AIL+NP DKT + L++ N+T  DILLK ELD  A   P +FK
Sbjct:   162 IGMLAGGTGITPMLQVIKAILKNPSDKTEISLVFGNITEEDILLKKELDELAEKHP-QFK 220

Query:   223 VYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA 254
             VYYVL+ P + W  G+G VSKE+I+   P+P+
Sbjct:   221 VYYVLNNPPKGWTQGVGFVSKEIIESRLPSPS 252

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPCC970.03 SPCC970.03 "cytochrome b5 reductase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 99/205 (48%), Positives = 147/205 (71%)

Query:    52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPIT 111
             +  ++F+L+ +  ++HNTA +RF LP++  +LGLP+GQH+     D +G E  R YTP++
Sbjct:    59 DKIQQFELSDKAVLNHNTAIYRFRLPRANDVLGLPIGQHLKVF-VDVDGKEYSRSYTPLS 117

Query:   112 LDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTG 171
              D+D GYF+L+VK YP G+++  F E+  G+ + V+GPKG  K++ G AR FGMIAGGTG
Sbjct:   118 SDADKGYFDLLVKSYPNGKVSKKFSELKIGDTIGVRGPKGNWKHRTGLARHFGMIAGGTG 177

Query:   172 ITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPT 231
             ITPM Q+ RA+L N +D T + L+YANV+ GDI+L+DE+D+ A   P RF V+YVL+ P 
Sbjct:   178 ITPMLQIIRAVLSNFEDPTEITLLYANVSEGDIVLRDEIDALAKKDP-RFTVHYVLNNPP 236

Query:   232 EVWNGGIGHVSKEMIQMHCPTPAPD 256
             E W G +G V++E+I+ H P P+P+
Sbjct:   237 ENWKGSVGFVTQELIKAHFPAPSPE 261

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IC

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IC

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISM

GO:0051287 "NAD binding" evidence=ISM

ASPGD|ASPL0000000398 AN6366 [Emericella nidulans (taxid:162425)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 105/221 (47%), Positives = 143/221 (64%)

Query:    44 KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHI-LCRGKDSEGNE 102
             K R  L+P  F+ F L ++  ISHN   +RFALP+ T ILGLP+GQHI L    + +  E
Sbjct:    53 KPRKVLNPNEFQNFVLKEKNDISHNVTIYRFALPRPTDILGLPIGQHISLAATIEGQPKE 112

Query:   103 VIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARA 162
             V+R YTPI+ D++ GYF+L+VK YP+G ++ +   +  G+ + V+GPKG + Y     R 
Sbjct:   113 VVRSYTPISSDNEAGYFDLLVKAYPQGNISKYLTTLKVGDTMKVRGPKGAMVYTPNMCRH 172

Query:   163 FGMIAGGTGITPMFQLTRAILEN-PK----DKTNVHLIYANVTVGDILLKDELDSFATNS 217
              GMIAGGTGITPM Q+ +AI+ N P+    D T V LI+ANV   DILLKDEL+  A   
Sbjct:   173 IGMIAGGTGITPMLQIIKAIIRNRPRNGGNDTTQVDLIFANVNPDDILLKDELEKLAAED 232

Query:   218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
                F++YYVL+ P E W GG+G V+ +MI+   P PA DI+
Sbjct:   233 DG-FRIYYVLNNPPEGWTGGVGFVTPDMIKERLPAPASDIK 272

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|A4R935 CBR1 "NADH-cytochrome b5 reductase 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 103/221 (46%), Positives = 139/221 (62%)

Query:    44 KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGK----DSE 99
             K +  LDP  F+EF+L ++T ISHN A +R  LP  +SILGLP+GQHI         D  
Sbjct:    52 KPKKVLDPTKFQEFELKEKTIISHNVAIYRIQLPSPSSILGLPIGQHISIGADIPQPDGS 111

Query:   100 GNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQ 159
               EV+R YTPI+ D   GY +L++K YP G ++ +   +  G+ + V+GPKG   Y+   
Sbjct:   112 SKEVVRSYTPISGDEQPGYVDLLIKSYPTGNISKYMAGLSVGQSIRVRGPKGAFVYQPNM 171

Query:   160 ARAFGMIAGGTGITPMFQLTRAILENPK--DKTNVHLIYANVTVGDILLKDELDSFATNS 217
              R FGMIAGGTGITPM Q+ RAI+      D T V LI+ANVT  DILLK++LD+ A   
Sbjct:   172 VRHFGMIAGGTGITPMLQVVRAIVRGRAAGDTTQVDLIFANVTKEDILLKEDLDALAAED 231

Query:   218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
                F+V+YVL +P E W GG+G V+++MI    P PA D++
Sbjct:   232 KG-FRVHYVLDRPPEGWTGGVGFVTQDMITKWLPKPADDVK 271

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TAIR|locus:2147680 AT5G20080 "AT5G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 101/227 (44%), Positives = 139/227 (61%)

Query:    38 YLCSIKKSRG---SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCR 94
             YL   K+  G   +L+P+ + EFKL     +SHNT  FRF+   S   LGL V   +L R
Sbjct:    59 YLDQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFDPSAE-LGLHVASCLLTR 117

Query:    95 ---GKDSEGNE--VIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGP 149
                G ++EG    VIRPYTPI+     GYF+L++K+YP G+M+ HF  +  G+ L VKGP
Sbjct:   118 APLGYNAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKPGDVLEVKGP 177

Query:   150 KGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209
               + KY     +  GMIAGG+GITPM Q+  AI++NP+D T + L+YANV+  DILLK +
Sbjct:   178 VEKFKYSPNMKKHIGMIAGGSGITPMLQVIDAIVKNPEDNTQISLLYANVSPDDILLKQK 237

Query:   210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
             LD    N PN  K++Y +  PT+ W GG+G++SK+M     P P  D
Sbjct:   238 LDVLQANHPN-LKIFYTVDNPTKNWKGGVGYISKDMALKGLPLPTDD 283

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

SGD|S000001305 CBR1 "Microsomal cytochrome b reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 90/217 (41%), Positives = 138/217 (63%)

Query:    44 KSRGSLDPE--NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN 101
             K++  LDP+  +F+ F L ++T ++HNT+ ++F LP +  +LGLP+GQHI+ +  +  G 
Sbjct:    28 KTKPVLDPKRNDFQSFPLVEKTILTHNTSMYKFGLPHADDVLGLPIGQHIVIKA-NINGK 86

Query:   102 EVIRPYTPITLDSDI-GYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQA 160
             ++ R YTP +LD D  G FEL+VK YP G ++    E+  G+ + +KGP+G   Y+    
Sbjct:    87 DITRSYTPTSLDGDTKGNFELLVKSYPTGNVSKMIGELKIGDSIQIKGPRGNYHYERNCR 146

Query:   161 RAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220
                GMIAGGTGI PM+Q+ +AI  +P D T V L++ NV   DILLK EL++     P++
Sbjct:   147 SHLGMIAGGTGIAPMYQIMKAIAMDPHDTTKVSLVFGNVHEEDILLKKELEALVAMKPSQ 206

Query:   221 FKVYYVLSQPT-EVWNGGIGHVSKEMIQMHCPTPAPD 256
             FK+ Y L  P  E W GG+G+++K++I+ H P    D
Sbjct:   207 FKIVYYLDSPDREDWTGGVGYITKDVIKEHLPAATMD 243

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000017615 AN3862 [Emericella nidulans (taxid:162425)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/212 (41%), Positives = 130/212 (61%)

Query:    46 RGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIR 105
             +G LDP+ +K   L ++  ++ N  KF F LP    ++GLP+GQH+  +  + EG  V R
Sbjct:   260 KGFLDPKEYKSLPLVQKKTLAPNVYKFVFQLPGRQDVIGLPIGQHVAIKA-NIEGKTVSR 318

Query:   106 PYTPITLDSDIGYFELVVKMYPKGRMA-HHFREMHEGEYLPVKGPKGRLKYKVGQARAFG 164
              YTP + + D G  ELV+K YP G +   +   +  G+ +  +GPKG +KY  G  +  G
Sbjct:   319 SYTPTSNNIDRGVLELVIKCYPDGLLTGKYLANLQVGDKVEFRGPKGAMKYTKGLCKKIG 378

Query:   165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
             MIAGGTGITPM+QL RAI E+P D T + LIYAN +  DIL++ EL+ FA N P   K++
Sbjct:   379 MIAGGTGITPMYQLIRAICEDPTDTTEISLIYANRSEEDILMRSELEEFARNFPKNLKIW 438

Query:   225 YVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
             Y+L  P E W+ G G+++ E+++ H P    D
Sbjct:   439 YMLDTPPEKWSFGTGYITAEIMREHLPMADKD 470

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3GF86	NCB5R_PICST	1, ., 6, ., 2, ., 2	0.4588	0.8914	0.8098	yes	no
P0CP14	NCB5R_CRYNJ	1, ., 6, ., 2, ., 2	0.4404	0.9418	0.8265	yes	no
Q2UFN3	NCB5R_ASPOR	1, ., 6, ., 2, ., 2	0.4545	0.9069	0.8013	yes	no
Q9ZNT1	NB5R1_ARATH	1, ., 6, ., 2, ., 2	0.7149	0.8565	0.7864	yes	no
Q6BUX2	NCB5R_DEBHA	1, ., 6, ., 2, ., 2	0.4827	0.8875	0.8063	yes	no
Q6CA86	NCB5R_YARLI	1, ., 6, ., 2, ., 2	0.4176	0.9302	0.8275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.2	0.766
4th Layer	1.6.2.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
cd06183	234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	2e-97
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	6e-70
PTZ00319	300	PTZ00319, PTZ00319, NADH-cytochrome B5 reductase;	6e-62
PTZ00274	325	PTZ00274, PTZ00274, cytochrome b5 reductase; Provi	4e-36
pfam00970	99	pfam00970, FAD_binding_6, Oxidoreductase FAD-bindi	5e-36
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	7e-29
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	2e-28
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	2e-28
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	3e-24
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	7e-21
cd06214	241	cd06214, PA_degradation_oxidoreductase_like, NAD(P	4e-20
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	4e-19
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	2e-16
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	4e-14
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	9e-14
cd06190	232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	1e-13
cd06196	218	cd06196, FNR_like_1, Ferredoxin reductase-like pro	2e-13
cd06184	247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	3e-13
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	4e-13
cd06191	231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	2e-12
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	4e-12
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	6e-12
cd06211	238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	5e-11
cd06221	253	cd06221, sulfite_reductase_like, Anaerobic sulfite	7e-11
cd06209	228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	2e-10
cd06213	227	cd06213, oxygenase_e_transfer_subunit, The oxygena	2e-09
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	3e-09
cd06210	236	cd06210, MMO_FAD_NAD_binding, Methane monooxygenas	7e-09
PRK08221	263	PRK08221, PRK08221, anaerobic sulfite reductase su	1e-06
cd06220	233	cd06220, DHOD_e_trans_like2, FAD/NAD binding domai	1e-06
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	1e-06
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	3e-06
cd06197	220	cd06197, FNR_like_2, FAD/NAD(P) binding domain of	4e-06
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	5e-06
COG4097	438	COG4097, COG4097, Predicted ferric reductase [Inor	5e-06
PRK13289	399	PRK13289, PRK13289, bifunctional nitric oxide diox	5e-06
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	1e-05
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	2e-05
PRK10684	332	PRK10684, PRK10684, HCP oxidoreductase, NADH-depen	2e-05
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	1e-04
cd06192	243	cd06192, DHOD_e_trans_like, FAD/NAD binding domain	2e-04
TIGR02911	261	TIGR02911, sulfite_red_B, sulfite reductase, subun	3e-04
PRK00054	250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	0.001
cd06218	246	cd06218, DHOD_e_trans, FAD/NAD binding domain in t	0.002

>gnl|CDD|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

 Score =  284 bits (729), Expect = 2e-97
 Identities = 104/201 (51%), Positives = 144/201 (71%), Gaps = 2/201 (0%)

Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
           FKL  +  ISH+T  FRF LP    +LGLPVGQH+  +  D +G +V+RPYTPI+ D D 
Sbjct: 1   FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPD-DGEQVVRPYTPISPDDDK 59

Query: 117 GYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPM 175
           GYF+L++K+YP G+M+ +   +  G+ + ++GP G+ +YK  G+ +  GMIAGGTGITPM
Sbjct: 60  GYFDLLIKIYPGGKMSQYLHSLKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPM 119

Query: 176 FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWN 235
            QL RAIL++P+DKT + L+YAN T  DILL++ELD  A   P+RFKV+YVLS+P E W 
Sbjct: 120 LQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEGWK 179

Query: 236 GGIGHVSKEMIQMHCPTPAPD 256
           GG+G ++KEMI+ H P P  +
Sbjct: 180 GGVGFITKEMIKEHLPPPPSE 200

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. Length = 234

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score =  230 bits (588), Expect = 6e-70
 Identities = 89/223 (39%), Positives = 132/223 (59%), Gaps = 21/223 (9%)

Query: 49  LDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYT 108
           L+P      +L ++  +SH+   FRFALP    +LGLPVG+H+        G   +R YT
Sbjct: 629 LNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCA-TINGKLCMRAYT 687

Query: 109 PITLDSDIGYFELVVKMYPK---------GRMAHHFREMHEGEYLPVKGPKGRLKY---- 155
           P + D ++G+FELV+K+Y K         G M+ +   +  G+ + VKGP G ++Y    
Sbjct: 688 PTSSDDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRG 747

Query: 156 ------KVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209
                 K   A+   M+AGGTGITPM+Q+ +AIL +P+DKT + L+YAN T  DILL++E
Sbjct: 748 SFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREE 807

Query: 210 LDSFATNSPNRFKVYYVLSQP-TEVWNGGIGHVSKEMIQMHCP 251
           LD +A   P+R KV+YV+SQ   E W   +G V++ M++ H P
Sbjct: 808 LDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLP 850

Length = 888

>gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional

 Score =  196 bits (500), Expect = 6e-62
 Identities = 102/262 (38%), Positives = 143/262 (54%), Gaps = 33/262 (12%)

Query: 25  LVAVAAMIITIAVYLCSIKKSRG---SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTS 81
           +V +A +I        +   SR    +LDP+ F+ FKL K+T ++H+T  FRFAL   T 
Sbjct: 1   MVVLAVIIALGVAAFFAFMFSRSPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQ 60

Query: 82  ILGLPVGQHILCRGK-DSEGNE--VIRPYTPITLDSDIGYFELVVKMYPK---------G 129
            LGLP+GQHI+ R    + G    V   YTPI+ D + GY + ++K+Y K         G
Sbjct: 61  RLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFKGVHPSFPNGG 120

Query: 130 RMAHHFREMHEGEYLPVKGPKGRLKY---------------KVGQARAFGMIAGGTGITP 174
           R++ H   M  G+ + ++GP G+ +Y               K     AF MIAGGTGITP
Sbjct: 121 RLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITP 180

Query: 175 MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP-TEV 233
           M Q+  AI +N +D+T V L+YAN T  DILL+ ELD  A +   RF V+Y L +  T  
Sbjct: 181 MLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAAKDP--RFHVWYTLDREATPE 238

Query: 234 WNGGIGHVSKEMIQMHCPTPAP 255
           W  G G+V +EM++ H P P P
Sbjct: 239 WKYGTGYVDEEMLRAHLPVPDP 260

Length = 300

>gnl|CDD|140300 PTZ00274, PTZ00274, cytochrome b5 reductase; Provisional

 Score =  130 bits (328), Expect = 4e-36
 Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 43  KKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG-N 101
           K   G +  + ++ ++L +  PI+H+TA FRF L         P      C     +  +
Sbjct: 41  KPRPGRVFSQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMD 100

Query: 102 EVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQAR 161
           +  R YTP+T +   GYF+++VK    G M +H   MH G+ L  +    +++Y+  + +
Sbjct: 101 QCQRFYTPVTANHTKGYFDIIVKRKKDGLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWK 160

Query: 162 AFGMIAGGTGITPMFQLTRAILENP-----KDKTNVHLIYANVTVGDILLKDELDSFATN 216
             GMIAGGTG TPM Q+ R  L  P      D+T +  ++ N T   ILLK   D  A  
Sbjct: 161 HVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARR 220

Query: 217 SPNRFKVYYVLSQPTE--VWNGGIGHVSKEMIQMHCPTP 253
             NRFKVYY + Q  E   WN  +G+V+KEM++   P P
Sbjct: 221 YSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAP 259

Length = 325

>gnl|CDD|216220 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding domain

 Score =  123 bits (311), Expect = 5e-36
 Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
            KL ++  +SH+  +FRFALP    +LGLP GQHI  R    +G  V+R Y+P +   D+
Sbjct: 2   AKLVEKESLSHDVRRFRFALPSPDQVLGLPPGQHIFLRLP-IDGKLVVRAYSPASSPDDV 60

Query: 117 GYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155
           G  EL+VK+YP G+M+ +   +  G+ + VKGP G  +Y
Sbjct: 61  GELELLVKVYPGGKMSQYLDSLKIGDTVEVKGPLGHFEY 99

Length = 99

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score =  114 bits (288), Expect = 7e-29
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 14/197 (7%)

Query: 73   RFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132
            RF LP +    GL +GQ I  RG D +G ++I  Y+PITL  D+G   ++ +   KG + 
Sbjct: 936  RFNLPGALQRSGLTLGQFIAIRG-DWDGQQLIGYYSPITLPDDLGVISILARG-DKGTLK 993

Query: 133  HHFREMHEGEYLPVKGPKG----------RLKYKVGQARAFGMIAGGTGITPMFQLTRAI 182
                 +  G+ + +K   G          +  ++    R   +IAGGTG+ PM Q+ RA 
Sbjct: 994  EWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAA 1053

Query: 183  LENPKDKT--NVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGH 240
            L+ P   +  ++ LIYA   V ++  ++ L+S+   +P +FK ++VL+ P E W  G+G 
Sbjct: 1054 LKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGF 1113

Query: 241  VSKEMIQMHCPTPAPDI 257
            V + ++Q     P+ D+
Sbjct: 1114 VDRALLQSALQPPSKDL 1130

Length = 1167

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score =  107 bits (269), Expect = 2e-28
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 60  TKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYF 119
                ++ +   FR  LP   S      GQ++       +G  + R Y+  +   + G  
Sbjct: 1   VATEDVTDDVRLFRLQLPNGFSFKP---GQYVDLHL-PGDGRGLRRAYSIASSPDEEGEL 56

Query: 120 ELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLT 179
           EL VK+ P G  +    ++  G+ + V GP G     + ++    +IAGG GITP   + 
Sbjct: 57  ELTVKIVPGGPFSAWLHDLKPGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSML 116

Query: 180 RAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIG 239
           R +  + K    + L+Y   T  D+L  DEL+  A      F++   LS+ +E   G  G
Sbjct: 117 RHLAAD-KPGGEITLLYGARTPADLLFLDELEELA-KEGPNFRLVLALSRESEAKLGPGG 174

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  108 bits (271), Expect = 2e-28
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 15/195 (7%)

Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
           +K+ ++  IS +T   R  LP   ++   P GQ ++ R     G    RPY+  +   D 
Sbjct: 10  YKVVEKEEISPDTFLLRLRLP-FVALTFKP-GQFVMLR--VPGGVR--RPYSLASAPDDK 63

Query: 117 GYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMF 176
           G  EL +++Y  G++  +   + EG+ + V+GP G    +    +   +IAGGTGI P++
Sbjct: 64  GELELHIRVYEVGKVTKYIFGLKEGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLY 123

Query: 177 QLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNG 236
            + + + E   D   V L+Y   T  D+LL DEL+  A       +V+ V       W G
Sbjct: 124 AIAKELKEKG-DANKVTLLYGARTAKDLLLLDELEELAEK-----EVHPVTDDG---WKG 174

Query: 237 GIGHVSKEMIQMHCP 251
             G V+ ++++    
Sbjct: 175 RKGFVTTDVLKELLD 189

Length = 252

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 6/193 (3%)

Query: 61  KRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFE 120
           K    + +   FRFA P  +     P GQ +     + +G  V R YT  +  S      
Sbjct: 5   KIIQETPDVKTFRFAAPDGSLFAYKP-GQFLTL-ELEIDGETVYRAYTLSSSPSRPDSLS 62

Query: 121 LVVKMYPKGRMAHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLT 179
           + VK  P G +++     +  G+ L   GP G        A    +++ G+GITPM  + 
Sbjct: 63  ITVKRVPGGLVSNWLHDNLKVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMA 122

Query: 180 RAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP-TEVWNGGI 238
           R +L+   D  ++  I++  +  DI+  DEL+  A   PN F+++ +L QP    W G  
Sbjct: 123 RWLLDTRPD-ADIVFIHSARSPADIIFADELEELARRHPN-FRLHLILEQPAPGAWGGYR 180

Query: 239 GHVSKEMIQMHCP 251
           G ++ E++ +  P
Sbjct: 181 GRLNAELLALLVP 193

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score = 84.3 bits (209), Expect = 7e-21
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           MIAGGTGI P++ + +A+LE+ +D T V+L+Y N T  D+LL++EL+  A   PN  KV 
Sbjct: 1   MIAGGTGIAPLYSVLKALLED-EDGTEVYLVYGNRTEDDLLLREELEELAKKYPN-LKVV 58

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
            V S+  + W G  G+V+  +++ H      D
Sbjct: 59  AV-SRTDDGWYGRKGYVTDALLEEHLSEDLGD 89

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

 Score = 86.1 bits (214), Expect = 4e-20
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 88  GQHILCRGKDSEGNEVIRPY----TPITLDSDIGYFELVVKMYPKGRM---AHHFREMHE 140
           GQ +  R    +G EV R Y    +P           + VK  P GR    A+   E+  
Sbjct: 36  GQFLTLR-VPIDGEEVRRSYSICSSP-----GDDELRITVKRVPGGRFSNWAND--ELKA 87

Query: 141 GEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANV 199
           G+ L V  P GR        AR + + A G+GITP+  + +  L        V L+Y N 
Sbjct: 88  GDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASR-VTLVYGNR 146

Query: 200 TVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247
           T   ++ ++EL       P+R  V +VLS+     +   G +    + 
Sbjct: 147 TEASVIFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLN 194

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 6/182 (3%)

Query: 69  TAK-FRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYP 127
           T K FR A+P       L  GQH+  R    +G    R Y+  +  +  G  EL VK  P
Sbjct: 15  TVKTFRLAVPDGVPPPFLA-GQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVP 73

Query: 128 KGRMAHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP 186
            G ++ +   E+  G+ L V+GP G   +         ++AGG+GI P+  + R   +  
Sbjct: 74  GGEVSPYLHDEVKVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDL- 132

Query: 187 KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP-TEVWNGGIGHVSKEM 245
                  L+Y+  T  D++ +DEL+  A   PN   V   L++     W G  G ++ ++
Sbjct: 133 GWPVPFRLLYSARTAEDVIFRDELEQLARRHPN-LHVTEALTRAAPADWLGPAGRITADL 191

Query: 246 IQ 247
           I 
Sbjct: 192 IA 193

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 18/187 (9%)

Query: 51  PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYT-- 108
              F+   +T   P + +   F    P    +   P GQ+I   G  + G  ++R Y+  
Sbjct: 2   SAGFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEP-GQYITV-GLPNGGEPLLRAYSLS 59

Query: 109 --PITLDSDIGYFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGM 165
             P     +   + + VK    G  ++     +  G+ L V  P G         R   +
Sbjct: 60  SAP----DEDSLYRISVKREDGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLPERKLLL 115

Query: 166 IAGGTGITPMFQLTRAILENPKDK--TNVHLIYANVTVGDILLKDELDSFATNSPNRFKV 223
           +AGG GITP      ++L    D+   +V L++A  T  D+  +DE    A   PN   +
Sbjct: 116 LAGGIGITPF----LSMLRTLLDRGPADVVLVHAARTPADLAFRDE-LELAAELPNALLL 170

Query: 224 YYVLSQP 230
                + 
Sbjct: 171 GLYTERG 177

Length = 266

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 88  GQHILCRGKDSEGNEVIRPYTPITLDSDI-GYFELVVKMYPKGRMAHHFREMHE-GEYLP 145
           GQH+   G + +G    R Y+  +  +   G   L VK  P G +++        G+ + 
Sbjct: 49  GQHVRL-GVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDGLVSNWLVNHLAPGDVVE 107

Query: 146 VKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDIL 205
           +  P+G             +IA G+GITP+  + R +L       +V L+Y   T  D++
Sbjct: 108 LSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTREDVI 166

Query: 206 LKDELDSFATNSPN-RFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP 251
             DEL + A   PN R  + Y             G +S   +    P
Sbjct: 167 FADELRALAAQHPNLRLHLLYTRE-------ELDGRLSAAHLDAVVP 206

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score = 68.0 bits (167), Expect = 9e-14
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 16/183 (8%)

Query: 64  PISHNTAKFRFALPKSTSILGLPV----GQHILCRGKDSEGNEVIRPYTPITLDSDIGYF 119
            ++H+ A  R  L +       P+    GQ++             R Y+P    ++ G  
Sbjct: 6   RLTHDIAVVRLQLDQ-------PLPFWAGQYVNVT--VPGRPRTWRAYSPANPPNEDGEI 56

Query: 120 ELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQL 178
           E  V+  P GR+++    E+  G+ + + GP G    +    R    IAGGTG+ P+  +
Sbjct: 57  EFHVRAVPGGRVSNALHDELKVGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAI 116

Query: 179 TRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGI 238
               L    +   VHL +   T  D+   + L + A   P   +V  V+S     W G  
Sbjct: 117 VEDALRRG-EPRPVHLFFGARTERDLYDLEGLLALAARHPW-LRVVPVVSHEEGAWTGRR 174

Query: 239 GHV 241
           G V
Sbjct: 175 GLV 177

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 13/189 (6%)

Query: 59  LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGY 118
           L     ++H+ A+FRFAL        LP GQ+ L       G E  R Y+   L +  G 
Sbjct: 1   LVDVRELTHDVAEFRFAL--DGPADFLP-GQYALL---ALPGVEGARAYSMANLANASGE 54

Query: 119 FELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQ 177
           +E ++K  P G  ++  F  +  G+ L + GP G    +  + R    IAGG+G+ PM  
Sbjct: 55  WEFIIKRKPGGAASNALFDNLEPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLS 114

Query: 178 LTRAILENPKDKT-NVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTE---- 232
           + R    +P      V L Y   T  D+   DEL +       R +V   +S        
Sbjct: 115 ILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSA-LVALGARLRVTPAVSDAGSGSAA 173

Query: 233 VWNGGIGHV 241
            W+G  G V
Sbjct: 174 GWDGPTGFV 182

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. Length = 232

>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 40/205 (19%)

Query: 58  KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHI---LCRGKDSEG-NEVIRPYTPITLD 113
            L    P++H+  + RF  P+         GQ     +    D  G  +  RP+T  +L 
Sbjct: 4   TLLSIEPVTHDVKRLRFDKPEG---YDFTPGQATEVAI----DKPGWRDEKRPFTFTSLP 56

Query: 114 SDIGYFELVVKMYPKGRMAHH-----FREMHEGEYLPVKGPKGRLKYKVGQARAFG---M 165
            D    E V+K YP     H         +  G+ L ++ P G ++YK       G    
Sbjct: 57  ED-DVLEFVIKSYPD----HDGVTEQLGRLQPGDTLLIEDPWGAIEYK-------GPGVF 104

Query: 166 IAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYY 225
           IAGG GITP   + R +    K + N  LI+AN T  DI+LKDEL+          K   
Sbjct: 105 IAGGAGITPFIAILRDLAAKGKLEGN-TLIFANKTEKDIILKDELEKMLGL-----KFIN 158

Query: 226 VLS-QPTEVWNGGIGHVSKEMIQMH 249
           V++ +    +    G + K  ++ H
Sbjct: 159 VVTDEKDPGYAH--GRIDKAFLKQH 181

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 218

>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 15/213 (7%)

Query: 54  FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPV---GQHILCRGK-DSEGNEVIRPYTP 109
           F+ F + ++   S +   F     +      LP    GQ++  R K    G   IR Y+ 
Sbjct: 6   FRPFVVARKVAESEDITSFYL---EPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYS- 61

Query: 110 ITLDSDIGYFELVVKMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAG 168
           ++   +  Y+ + VK  P G ++++    +  G+ L V  P G         R   +I+ 
Sbjct: 62  LSDAPNGDYYRISVKREPGGLVSNYLHDNVKVGDVLEVSAPAGDFVLDEASDRPLVLISA 121

Query: 169 GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLS 228
           G GITPM  +  A+      +  V  I+A         +DEL+  A   PN  K++   S
Sbjct: 122 GVGITPMLSMLEALAAEGPGR-PVTFIHAARNSAVHAFRDELEELAARLPN-LKLHVFYS 179

Query: 229 QPTEVWNGGI----GHVSKEMIQMHCPTPAPDI 257
           +P            G +   +++        D 
Sbjct: 180 EPEAGDREEDYDHAGRIDLALLRELLLPADADF 212

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 88  GQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE-MHEGEYLPV 146
           GQH+  R ++ +G E+ R Y+ I      G   + VK  P G  +    + +  G+ L V
Sbjct: 36  GQHLTLR-REVDGEELRRSYS-ICSAPAPGEIRVAVKKIPGGLFSTWANDEIRPGDTLEV 93

Query: 147 KGPKGRLKYKVGQARA--FGMIAGGTGITPMFQLTRAIL-ENPKDKTNVHLIYANVTVGD 203
             P+G     +    A  +  +A G+GITPM  +   +L   P+  +   L+Y N     
Sbjct: 94  MAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR--STFTLVYGNRRTAS 151

Query: 204 ILLKDELDSFATNSPNRFKVYYVLSQPT---EVWNGGI 238
           ++  +EL       P RF + +VLS+      + +G +
Sbjct: 152 VMFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRL 189

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 66  SHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKM 125
           + +     FA+P        P GQH+  +  D +G E+ R Y+ +          + VK 
Sbjct: 10  TPDAVTIVFAVPGPLQYGFRP-GQHVTLK-LDFDGEELRRCYS-LCSSPAPDEISITVKR 66

Query: 126 YPKGRMAHHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILE 184
            P GR++++ RE +  G  + V GP+G   Y+      + ++A G+GITP+  + RA L+
Sbjct: 67  VPGGRVSNYLREHIQPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQ 126

Query: 185 NPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQ 229
              + ++  LI++  T  D++   EL   A       ++  + ++
Sbjct: 127 TAPE-SDFTLIHSARTPADMIFAQELRELADKPQR-LRLLCIFTR 169

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 231

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 63.3 bits (155), Expect = 4e-12
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 24/192 (12%)

Query: 58  KLTKRTPISHNTAKFRFALPKSTSILGLPVGQH--ILCRGKDSEGNEVIRPYTPITLDSD 115
           K+    P++ +  + R   P     L    GQ+  +L    D       RP++  +   +
Sbjct: 2   KVESIEPLNDDVYRVRLKPPAPLDFLA---GQYLDLLLDDGDK------RPFSIASAPHE 52

Query: 116 IGYFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITP 174
            G  EL ++  P G  + + F E+ E   + ++GP G    +    R   +IAGGTG  P
Sbjct: 53  DGEIELHIRAVPGGSFSDYVFEELKENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAP 112

Query: 175 MFQLTRAILEN---PKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYY--VLSQ 229
           +    ++ILE+      K  +HL +   T  D+ L + L+++A   PN     Y  VLS+
Sbjct: 113 I----KSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAHPN---FTYVPVLSE 165

Query: 230 PTEVWNGGIGHV 241
           P E W G  G V
Sbjct: 166 PEEGWQGRTGLV 177

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 100 GNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVG 158
           G E  R ++     +D G  E ++K YP G  +      +  G+ + V GP G    +  
Sbjct: 42  GTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDDGLAVGDPVTVTGPYGTCTLRES 101

Query: 159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218
           + R   +I GG+G+ P+  L R +  +  D+  V   Y   T  D+   +E+ +     P
Sbjct: 102 RDRPIVLIGGGSGMAPLLSLLRDMAASGSDRP-VRFFYGARTARDLFYLEEIAALGEKIP 160

Query: 219 NRFKVYYVLSQ--PTEVWNGGIGHVSKEMIQMHCPTPA 254
           + F     LS+    E W+G  G V+ E++Q +  T A
Sbjct: 161 D-FTFIPALSESPDDEGWSGETGLVT-EVVQRNEATLA 196

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 17/197 (8%)

Query: 53  NFKEFK--LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPI 110
           N K+F+  + +   ++      R  L +   I     GQ++  +   + G E  R ++  
Sbjct: 3   NVKDFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQA-GQYVNLQ---APGYEGTRAFSIA 58

Query: 111 TLDSDIGYFELVVKMYPKGRMAHHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGG 169
           +  SD G  EL +++ P G    +  + + EG+ L + GP G    +    R    IAGG
Sbjct: 59  SSPSDAGEIELHIRLVPGGIATTYVHKQLKEGDELEISGPYGDFFVRDSDQRPIIFIAGG 118

Query: 170 TGITPMFQLTRAI---LENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYV 226
           +G++      R++   L    D   + L +   T  ++   DE ++   + PN FK    
Sbjct: 119 SGLSSP----RSMILDLLERGDTRKITLFFGARTRAELYYLDEFEALEKDHPN-FKYVPA 173

Query: 227 LSQPTEV--WNGGIGHV 241
           LS+      W G  G V
Sbjct: 174 LSREPPESNWKGFTGFV 190

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238

>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 109 PITLDSD---IGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGM 165
           PI++ SD    G  EL ++    GR+     E+  G+ + ++GP G   + V + +  G 
Sbjct: 45  PISISSDPTRRGPLELTIRR--VGRVTEALHELKPGDTVGLRGPFGN-GFPVEEMK--GK 99

Query: 166 ----IAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRF 221
               +AGG G+ P+  L   IL+N +D   V L+Y   T  D+L K+EL  +A    +  
Sbjct: 100 DLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWA-KRSD-V 157

Query: 222 KVYYVLSQPTEVWNGGIGHV 241
           +V   + +  E W G +G V
Sbjct: 158 EVILTVDRAEEGWTGNVGLV 177

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. Length = 253

>gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 12/195 (6%)

Query: 65  ISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVK 124
           +S +T      L ++ ++  LP GQ++  +     G +  R Y+  +   D    E +++
Sbjct: 12  LSDSTIGLTLELDEAGALAFLP-GQYVNLQ---VPGTDETRSYSFSSAPGD-PRLEFLIR 66

Query: 125 MYPKGRMAHHFREMHE-GEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAIL 183
           + P G M+ + R+  + G+ L + GP G    +  + R   M+AGGTG+ P   +   + 
Sbjct: 67  LLPGGAMSSYLRDRAQPGDRLTLTGPLGSFYLREVK-RPLLMLAGGTGLAPFLSMLDVLA 125

Query: 184 ENPKDKTNVHLIYANVTVGDILLK-DELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVS 242
           E+      VHL+Y  VT    L++ D L++ A   P  F    V++ P + W+   G+V+
Sbjct: 126 EDGSAHP-VHLVYG-VTRDADLVELDRLEALAERLPG-FSFRTVVADP-DSWHPRKGYVT 181

Query: 243 KEMIQMHCPTPAPDI 257
             +          D+
Sbjct: 182 DHLEAEDLNDGDVDV 196

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228

>gnl|CDD|99809 cd06213, oxygenase_e_transfer_subunit, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 11/159 (6%)

Query: 99  EGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKV 157
            G    R Y+        G     ++  P G  +   F     GE L V+GP G    + 
Sbjct: 39  PGLPAARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGADRTGERLTVRGPFGDFWLRP 98

Query: 158 GQARAFGMIAGGTGITPMFQLTRAILENPK---DKTNVHLIYANVTVGDILLKDELDSFA 214
           G A     IAGG+G+ P+     AILE  +    K +V L++   T  D+   DE+ + A
Sbjct: 99  GDAPIL-CIAGGSGLAPI----LAILEQARAAGTKRDVTLLFGARTQRDLYALDEIAAIA 153

Query: 215 TNSPNRFKVYYVLSQ--PTEVWNGGIGHVSKEMIQMHCP 251
                RF+   VLS+      W G  G V++ + ++   
Sbjct: 154 ARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEVLLA 192

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 227

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 12/192 (6%)

Query: 59  LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGY 118
           +     +S +  + R    +    L    GQ++  R          R Y+P +L      
Sbjct: 1   VVSLQRLSPDVLRVRLEPDRPLPYLP---GQYVNLRRAGGLA----RSYSPTSLPDGDNE 53

Query: 119 FELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVG-QARAFGMIAGGTGITPMF 176
            E  ++  P G  +     E   G  L ++GP G+  Y+         ++  GTG+ P++
Sbjct: 54  LEFHIRRKPNGAFSGWLGEEARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLW 113

Query: 177 QLTR-AILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWN 235
            + R A+ +  + +  + L++      D+ L   L   A   PN   +  V         
Sbjct: 114 GIARAALRQGHQGE--IRLVHGARDPDDLYLHPALLWLAREHPNFRYIPCVSEGSQGDPR 171

Query: 236 GGIGHVSKEMIQ 247
              G ++  +  
Sbjct: 172 VRAGRIAAHLPP 183

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|99806 cd06210, MMO_FAD_NAD_binding, Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 3/143 (2%)

Query: 100 GNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVG 158
           G +  R Y+     +  G  E ++++ P G  + +       G+ L ++GP G    +  
Sbjct: 47  GTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQRLNLRGPLGAFGLREN 106

Query: 159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218
             R    +AGGTG+ P+  + R + E   +     L +   T  ++   DEL   A + P
Sbjct: 107 GLRPRWFVAGGTGLAPLLSMLRRMAEW-GEPQEARLFFGVNTEAELFYLDELKRLADSLP 165

Query: 219 NRFKVYYVLSQPTEVWNGGIGHV 241
           N   V   + +P   W G  G V
Sbjct: 166 N-LTVRICVWRPGGEWEGYRGTV 187

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. Length = 236

>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B; Provisional

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 166 IAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYY 225
           +AGGTG+ P+  L R   ENP++  ++ LI       DIL K++L  +         +  
Sbjct: 107 VAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDLKRWREK----INLIL 162

Query: 226 VLSQPTEVWNGGIGHVSK 243
            L +  E + G +G V+K
Sbjct: 163 TLDEGEEGYRGNVGLVTK 180

Length = 263

>gnl|CDD|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 109 PITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAG 168
           P++L    G   + VK   +   A H  ++ EG+ L ++GP G   +++   +   +I G
Sbjct: 41  PMSLSYIDGPNSITVKKVGEATSALH--DLKEGDKLGIRGPYGN-GFELVGGKVL-LIGG 96

Query: 169 GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS 212
           G GI P+      + E  K   +V ++    T  ++L  D L  
Sbjct: 97  GIGIAPLA----PLAERLKKAADVTVLLGARTKEELLFLDRLRK 136

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 233

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 146 VKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKT---NVHLIYANVTVG 202
           V+GP GR  +   +AR    IAGG GITP      A+LE    +     V L Y      
Sbjct: 82  VEGPYGRFTFDDRRARQI-WIAGGIGITPF----LALLEALAARGDARPVTLFYCVRDPE 136

Query: 203 DILLKDELDSFATNSPNRFKVYYVLSQPTEVW 234
           D +  DEL + A        V +V+  P++  
Sbjct: 137 DAVFLDELRALAA---AAGVVLHVIDSPSDGR 165

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 4/145 (2%)

Query: 100 GNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHE-GEYLPVKGPKGRLKYKVG 158
           G +  R Y+     +     + ++++ P G M+++ RE  + G+ +  + P G   Y   
Sbjct: 149 GTDDWRSYSFANRPNATNQLQFLIRLLPDGVMSNYLRERCQVGDEILFEAPLGAF-YLRE 207

Query: 159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218
             R    +AGGTG++    +   + E       VHL Y      D+     L ++A   P
Sbjct: 208 VERPLVFVAGGTGLSAFLGMLDELAEQGCSPP-VHLYYGVRHAADLCELQRLAAYAERLP 266

Query: 219 NRFKVYYVLSQPTEVWNGGIGHVSK 243
           N F+ + V+S+ +  W G  G++ +
Sbjct: 267 N-FRYHPVVSKASADWQGKRGYIHE 290

Length = 340

>gnl|CDD|99794 cd06197, FNR_like_2, FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 24/175 (13%)

Query: 60  TKRTPISHNTAKFRFALPKSTSILGLPVGQHIL--CRGKDSEGNEVIRPYTPITLDSD-I 116
            K   I+    +F F L     +     GQ+I      +   G   +    P +L+ D +
Sbjct: 1   IKSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFV 60

Query: 117 GYF-------------ELVVKMYPKGRMAHHFREMHE-----GEYLPVKGPKGRLKYK-- 156
             F             E  + +  KG +     ++       G  +PV G  G       
Sbjct: 61  RTFTVSSAPPHDPATDEFEITVRKKGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLP 120

Query: 157 -VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL 210
             G  R    IAGG GITP   + RAIL +     ++ L+++       L+ D L
Sbjct: 121 GEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITLLWSLREDDLPLVMDTL 175

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 220

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 165 MIAGGTGITPMFQLTRAIL----ENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220
           MIA GTGI P     R +      + K      L +       +L  DEL+ +    P+ 
Sbjct: 140 MIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDN 199

Query: 221 FKVYYVLS 228
           F++ Y  S
Sbjct: 200 FRIDYAFS 207

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 141 GEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVT 200
           G  L V GP G+  ++ G       IAGG GITP   +   + E   D   VHL Y +  
Sbjct: 297 GTKLEVDGPYGKFDFERGLN-TQVWIAGGIGITPFISMLFTLAERKSDPP-VHLFYCSRN 354

Query: 201 VGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249
             + L  +EL + A   PN      VL     + +   G++ +E ++ +
Sbjct: 355 WEEALYAEELRALAQKLPN-----VVL---HIIDSSKDGYLDQEDLERY 395

Length = 438

>gnl|CDD|237337 PRK13289, PRK13289, bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 54  FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPV-----GQHILCRGK-DSEGNEVIRPY 107
           +++F++ K+ P S     F    P      G PV     GQ++  R   + E  + IR Y
Sbjct: 154 WRDFRVVKKVPESEVITSFYLE-PVD----GGPVADFKPGQYLGVRLDPEGEEYQEIRQY 208

Query: 108 TPITLDSDIGYFELVVKMYPKGRMAHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMI 166
           + ++   +  Y+ + VK    G+++++    ++ G+ L +  P G     V       +I
Sbjct: 209 S-LSDAPNGKYYRISVKREAGGKVSNYLHDHVNVGDVLELAAPAGDFFLDVASDTPVVLI 267

Query: 167 AGGTGITPMFQ-LTRAILENPKDKTNVHLIYA--NVTVGDILLKDELDSFATNSPNRFKV 223
           +GG GITPM   L     + PK    VH I+A  N  V     +DE+++ A   PN  K 
Sbjct: 268 SGGVGITPMLSMLETLAAQQPKRP--VHFIHAARNGGVH--AFRDEVEALAARHPN-LKA 322

Query: 224 YYVLSQPTE 232
           +    +PTE
Sbjct: 323 HTWYREPTE 331

Length = 399

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 9/120 (7%)

Query: 118 YFELVVKMYPKGRMAHHFREMHEGEYLPV-KGPKGRLKYK-VGQARAFGMIAGGTGITPM 175
             E  + + P G +     ++  G+ + V K P G L    V   +   ++A GTGI P 
Sbjct: 57  NLEFYIILVPDGPLTPRLFKLKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPF 116

Query: 176 FQLTRAILENP---KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTE 232
                ++L +    +    + L++      ++  +DE+++ A     +F+   ++S+  E
Sbjct: 117 ----LSMLRDLEIWERFDKIVLVHGVRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKE 172

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 120 ELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQL 178
           EL ++  P G    H F  + E + L ++GP G    +    +   ++A GTG  P+   
Sbjct: 163 ELHIRHMPGGVFTDHVFGALKERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPI--- 219

Query: 179 TRAILE---NPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPT--EV 233
            ++I+E       +  V L +      D+ L    + +A   PN F+   V+S     + 
Sbjct: 220 -KSIVEHLRAKGIQRPVTLYWGARRPEDLYLSALAEQWAEELPN-FRYVPVVSDALDDDA 277

Query: 234 WNGGIGHV 241
           W G  G V
Sbjct: 278 WTGRTGFV 285

Length = 339

>gnl|CDD|236735 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 20/176 (11%)

Query: 88  GQHILCRGKDSEGNEVIRPYTPITLDSDIG---YFELVVKMYPKGRMAHHF-REMHEGEY 143
           GQ+ L   ++S   E +R YT   L S  G   +  L V+    G  +    R++  G+Y
Sbjct: 40  GQYALVSIRNSA--ETLRAYT---LSSTPGVSEFITLTVRRIDDGVGSQWLTRDVKRGDY 94

Query: 144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGD 203
           L +    G           + ++A G G+TP+  + R +L+N + + +V +I+   T  D
Sbjct: 95  LWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKN-RPQADVQVIFNVRTPQD 153

Query: 204 ILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGI--GHVSKEMIQMHCPTPAPDI 257
           ++  DE        P +  +  V          G   G +++E++Q       PD+
Sbjct: 154 VIFADEWRQLKQRYP-QLNLTLVAENNA---TEGFIAGRLTRELLQQA----VPDL 201

Length = 332

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 117 GYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPM 175
           G+FEL ++    GR+      + EG+ + V+GP G        +     +IAGG G+ P+
Sbjct: 66  GFFELCIRR--AGRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPL 123

Query: 176 FQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL 210
             +    ++N     N+ LIY      D+L  DEL
Sbjct: 124 RSVLLYAMDNRWKYGNITLIYGAKYYEDLLFYDEL 158

Length = 289

>gnl|CDD|99789 cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 12/160 (7%)

Query: 59  LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGY 118
           + K+  +  N        P +   L  P GQ +  R  +S G E I P +   +D + G 
Sbjct: 1   IVKKEQLEPNLVLLTIKAPLAAR-LFRP-GQFVFLRNFESPGLERI-PLSLAGVDPEEGT 57

Query: 119 FELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR--LKYKVGQARAFGMIAGGTGITPMF 176
             L+V+   +G       E+  GE L V GP G      K G       +AGG G+ P+ 
Sbjct: 58  ISLLVE--IRGPKTKLIAELKPGEKLDVMGPLGNGFEGPKKGGTVLL--VAGGIGLAPLL 113

Query: 177 QLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
            + +       +   V ++       +  L +  +  A  
Sbjct: 114 PIAKK---LAANGNKVTVLAGAKKAKEEFLDEYFELPADV 150

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 243

>gnl|CDD|131957 TIGR02911, sulfite_red_B, sulfite reductase, subunit B

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 12/144 (8%)

Query: 109 PITLDSDIG--YFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMI 166
           PI++ S IG  Y +L ++    G++      + EG+ L ++GP G   + V   +   ++
Sbjct: 48  PISV-SGIGEGYIDLTIRRV--GKVTDEVFTLKEGDNLFLRGPYGN-GFDVDNYKHKELV 103

Query: 167 --AGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
             AGGTG+ P+  +    ++NPK+  +++LI    T  DIL K+++  +  N      + 
Sbjct: 104 VVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKGN----INLT 159

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQM 248
             L +  E + G IG V+K + ++
Sbjct: 160 LTLDEAEEDYKGNIGLVTKYIPEL 183

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum [Central intermediary metabolism, Sulfur metabolism]. Length = 261

>gnl|CDD|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 109 PITL-DSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR---LKYKVGQARAFG 164
           PI++ D D     ++ +   +G       ++ EG+ L ++GP G    L+   G+     
Sbjct: 52  PISISDIDKNEITILYRKVGEGTKKLS--KLKEGDELDIRGPLGNGFDLEEIGGKVLL-- 107

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215
            + GG G+ P+++L + + +   + T   ++ A  T  +++ ++E      
Sbjct: 108 -VGGGIGVAPLYELAKELKKKGVEVT--TVLGA-RTKDEVIFEEEFAKVGD 154

Length = 250

>gnl|CDD|99814 cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 117 GYFELVVKMYPKG--RMAHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGIT 173
           G   L+ K+  KG   ++    E+  G+ L V GP G          +   ++ GG GI 
Sbjct: 57  GTITLLYKVVGKGTRLLS----ELKAGDELDVLGPLGNGFDLPDDDGKVL-LVGGGIGIA 111

Query: 174 PMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS 212
           P+  L + + E       V ++    +  D+ L +E ++
Sbjct: 112 PLLFLAKQLAERGI---KVTVLLGFRSADDLFLVEEFEA 147

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 246

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	100.0
PTZ00274	325	cytochrome b5 reductase; Provisional	100.0
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	100.0
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	100.0
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	100.0
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	100.0
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	100.0
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	100.0
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	100.0
PLN02252	888	nitrate reductase [NADPH]	100.0
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	100.0
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	100.0
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	100.0
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	100.0
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	100.0
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	100.0
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	100.0
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	100.0
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	100.0
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	100.0
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	100.0
PRK08051	232	fre FMN reductase; Validated	100.0
PRK10926	248	ferredoxin-NADP reductase; Provisional	100.0
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	100.0
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	100.0
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	100.0
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	100.0
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	100.0
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	100.0
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	100.0
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	100.0
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	100.0
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	100.0
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	100.0
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	100.0
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	100.0
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	100.0
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	100.0
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	100.0
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	100.0
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	100.0
PRK05713	312	hypothetical protein; Provisional	100.0
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.98
PRK05802	320	hypothetical protein; Provisional	99.97
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	99.97
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	99.97
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.97
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	99.97
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.97
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.97
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	99.97
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	99.97
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.97
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.97
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	99.97
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.96
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	99.96
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.96
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.96
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.96
PLN02292	702	ferric-chelate reductase	99.95
cd06193	235	siderophore_interacting Siderophore interacting pr	99.95
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.94
PLN02631	699	ferric-chelate reductase	99.94
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.94
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.94
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.92
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.92
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.89
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.89
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.89
cd06203	398	methionine_synthase_red Human methionine synthase	99.88
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.87
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.87
PRK06214	530	sulfite reductase; Provisional	99.85
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.84
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.84
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	99.83
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	99.77
KOG3378	385	consensus Globins and related hemoproteins [Energy	99.7
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.68
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.66
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.65
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	99.56
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	99.52
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	99.4
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	99.36
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.34
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.02
COG1465	376	Predicted alternative 3-dehydroquinate synthase [A	85.38
PF00677	85	Lum_binding: Lumazine binding domain; InterPro: IP	82.7
PRK12446	352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	80.68

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=100.00  E-value=7e-43  Score=296.37  Aligned_cols=212  Identities=48%  Similarity=0.962  Sum_probs=201.4

Q ss_pred             CCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEE
Q 042788           44 KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVV  123 (258)
Q Consensus        44 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~V  123 (258)
                      ..+...++..|.++++++++.+++|+..++|..|.....++...|||+.+.++ .+|....|||||.|.+.+.|.++|.|
T Consensus        41 ~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~-i~g~~vvRpYTPvs~~~~~g~~~l~V  119 (286)
T KOG0534|consen   41 GKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAP-IGGKLVVRPYTPVSLDDDKGYFDLVV  119 (286)
T ss_pred             CcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEec-CCCcEEEEecCCccCccccceEEEEE
Confidence            45667778789999999999999999999999998877899999999999999 88899999999999998889999999


Q ss_pred             EEecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcc
Q 042788          124 KMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGD  203 (258)
Q Consensus       124 k~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d  203 (258)
                      |.|++|.+|++|+++++||+|+++||.|.|.+++..++++.|||||||||||++++++++.+..+.+++.|+|+|++.+|
T Consensus       120 K~Y~~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~te~D  199 (286)
T KOG0534|consen  120 KVYPKGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANKTEDD  199 (286)
T ss_pred             EeccCCcccHHHhcCCCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecCCccc
Confidence            99999999999999999999999999999999888899999999999999999999999999878899999999999999


Q ss_pred             cccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCCCCC
Q 042788          204 ILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD  256 (258)
Q Consensus       204 ~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~~~~  256 (258)
                      +++++||+++++++|.||++++++++++..|.+..|||++++++++++.+.++
T Consensus       200 ILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~  252 (286)
T KOG0534|consen  200 ILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEG  252 (286)
T ss_pred             cchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCC
Confidence            99999999999999988999999999999999999999999999999988763

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=100.00  E-value=1.6e-37  Score=272.37  Aligned_cols=202  Identities=36%  Similarity=0.617  Sum_probs=176.1

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC--CCCeeeeeccccccCCCCCEEEEEEEEecC
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS--EGNEVIRPYTPITLDSDIGYFELVVKMYPK  128 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~  128 (258)
                      +..|++++|++++.+++++++++|+.+... .+.|.||||+.+.++..  ++....|+|||+|.|.+++.++|+||++++
T Consensus        49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~-~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~  127 (325)
T PTZ00274         49 SQRYEPYQLGEVIPITHDTALFRFLLHSEE-EFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKD  127 (325)
T ss_pred             CCceEEEEEEEEEEeCCCeEEEEEeCCccc-ccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCC
Confidence            778999999999999999999999987532 47899999999877621  234678999999999877899999999999


Q ss_pred             CccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC-----CCCCeEEEEEEeCCCcc
Q 042788          129 GRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP-----KDKTNVHLIYANVTVGD  203 (258)
Q Consensus       129 G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~-----~~~~~v~l~~~~r~~~d  203 (258)
                      |.+|.||+++++||+|.++||.|.+.++++..++++||||||||||+++|+++++.++     .+..+++|+|++|+.+|
T Consensus       128 G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~d  207 (325)
T PTZ00274        128 GLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERH  207 (325)
T ss_pred             CcccHHHhcCCCCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHH
Confidence            9999999999999999999998887766565689999999999999999999988753     13458999999999999


Q ss_pred             cccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhhCCCC
Q 042788          204 ILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       204 ~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                      ++|.+||++|++++|++|+++++++++  ++.|.+..|+++++++.+.++++
T Consensus       208 i~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~  259 (325)
T PTZ00274        208 ILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAP  259 (325)
T ss_pred             hhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCC
Confidence            999999999999999779999999965  46688889999999888877654

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=100.00  E-value=2.5e-37  Score=269.58  Aligned_cols=210  Identities=44%  Similarity=0.787  Sum_probs=179.8

Q ss_pred             hccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC----eeeeeccccccCCCC
Q 042788           41 SIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN----EVIRPYTPITLDSDI  116 (258)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~----~~~R~ySi~s~~~~~  116 (258)
                      +....+..+++..|+.++|++++.+++++..++|+.+++.....|+||||+.|+++ ..+.    ...|+|||++.+.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~-~~~~~~~~~~~R~YS~~s~~~~~   98 (300)
T PTZ00319         20 FSRSPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCD-CTTPGKPETVQHSYTPISSDDEK   98 (300)
T ss_pred             hccCCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEE-eCCCCccceEEeeeccCCCcccC
Confidence            44556778899999999999999999999999999875544578999999999987 3332    578999999999877


Q ss_pred             CEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCC---------------CCceEEEEEcCccH
Q 042788          117 GYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVG---------------QARAFGMIAGGTGI  172 (258)
Q Consensus       117 ~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~---------------~~~~vvliagGtGI  172 (258)
                      +.++|+||.+         ++|.+|+||+.+++||+|.++||+|.|.+..+               ..++++||||||||
T Consensus        99 ~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGI  178 (300)
T PTZ00319         99 GYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGI  178 (300)
T ss_pred             CEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCccc
Confidence            8999999987         67999999999999999999999999866421               12579999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC-CCCCCCccccccHHHHhhhCC
Q 042788          173 TPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP-TEVWNGGIGHVSKEMIQMHCP  251 (258)
Q Consensus       173 tp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~-~~~~~~~~G~i~~~~l~~~~~  251 (258)
                      ||+++|++++.++..+..+++++|++|+.++++|.+||+++ +++++ ++++++++++ ++.|.+..|++++..+++.++
T Consensus       179 aP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~-~~~~~-~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~  256 (300)
T PTZ00319        179 TPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEA-AKDPR-FHVWYTLDREATPEWKYGTGYVDEEMLRAHLP  256 (300)
T ss_pred             CHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHH-hhCCC-EEEEEEECCCCCCCcccccceeCHHHHHhhcC
Confidence            99999999998764445689999999999999999999995 45666 9999999874 467888899999999988877


Q ss_pred             CC
Q 042788          252 TP  253 (258)
Q Consensus       252 ~~  253 (258)
                      +.
T Consensus       257 ~~  258 (300)
T PTZ00319        257 VP  258 (300)
T ss_pred             Cc
Confidence            44

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=4.2e-36  Score=253.32  Aligned_cols=196  Identities=26%  Similarity=0.466  Sum_probs=172.7

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      |++++|++++.+++++++++|+.++.. ...|+||||+.+++++.++...+|+|||++.+.+.+.++|+||..++|.+|.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~   79 (235)
T cd06217           1 WRVLRVTEIIQETPTVKTFRLAVPDGV-PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSP   79 (235)
T ss_pred             CceEEEEEEEecCCCeEEEEEECCCCC-cCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchH
Confidence            678999999999999999999988754 4689999999999974455566799999999987789999999988899999


Q ss_pred             ccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788          134 HFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS  212 (258)
Q Consensus       134 ~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~  212 (258)
                      ||. .+++||.|.+.||+|.|.+.....++++|||||+||||++++++++...+ ...+++++|++|+.+++++.+||++
T Consensus        80 ~l~~~l~~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~el~~  158 (235)
T cd06217          80 YLHDEVKVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG-WPVPFRLLYSARTAEDVIFRDELEQ  158 (235)
T ss_pred             HHHhcCCCCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhHHHHHHH
Confidence            997 58999999999999998876545689999999999999999999998864 4568999999999999999999999


Q ss_pred             HHhhCCCCeEEEEEEcCC-CCCCCCccccccHHHHhhhCCC
Q 042788          213 FATNSPNRFKVYYVLSQP-TEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       213 l~~~~~~~~~v~~~~s~~-~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +++++++ ++++.+++++ .++|.+..|+++++.+++..++
T Consensus       159 ~~~~~~~-~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~  198 (235)
T cd06217         159 LARRHPN-LHVTEALTRAAPADWLGPAGRITADLIAELVPP  198 (235)
T ss_pred             HHHHCCC-eEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC
Confidence            9998888 9999999987 5677788999999888776543

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=100.00  E-value=6.6e-36  Score=265.15  Aligned_cols=195  Identities=20%  Similarity=0.312  Sum_probs=171.6

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR  130 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~  130 (258)
                      +.++.+++|++++.++++++.++|+.+.......|+||||+.|+++   +...+|+|||++.|.+.+.++|+||.+++|.
T Consensus       103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySias~p~~~~~l~~~ik~~~~G~  179 (340)
T PRK11872        103 DTLKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIP---GTDDWRSYSFANRPNATNQLQFLIRLLPDGV  179 (340)
T ss_pred             ccceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeC---CCCceeecccCCCCCCCCeEEEEEEECCCCc
Confidence            4456689999999999999999999875433578999999999987   3445899999999877789999999999999


Q ss_pred             cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788          131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE  209 (258)
Q Consensus       131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e  209 (258)
                      +|.||+ .+++||+|.++||+|.|.++. ..++++||||||||||++++++++...+ ..++++|+|++|+.+|++|.++
T Consensus       180 ~s~~L~~~l~~G~~v~i~gP~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~dl~~~~e  257 (340)
T PRK11872        180 MSNYLRERCQVGDEILFEAPLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG-CSPPVHLYYGVRHAADLCELQR  257 (340)
T ss_pred             chhhHhhCCCCCCEEEEEcCcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC-CCCcEEEEEecCChHHhccHHH
Confidence            999995 799999999999999988764 3489999999999999999999998864 3468999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCC
Q 042788          210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP  251 (258)
Q Consensus       210 L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~  251 (258)
                      |++|++++|+ |+++.++++++++|.+..|++++.+.+..+.
T Consensus       258 l~~~~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~  298 (340)
T PRK11872        258 LAAYAERLPN-FRYHPVVSKASADWQGKRGYIHEHFDKAQLR  298 (340)
T ss_pred             HHHHHHHCCC-cEEEEEEeCCCCcCCCceeeccHHHHHhhcC
Confidence            9999999998 9999999988888999999999876655443

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=100.00  E-value=1.3e-35  Score=250.60  Aligned_cols=189  Identities=22%  Similarity=0.387  Sum_probs=166.3

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCC---CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKS---TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~---~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      +++|++++.++++++.++|+.++.   .....|+||||+.|+++   +...+|+|||++.+.+++.++|+||.+++|.+|
T Consensus         3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s   79 (236)
T cd06210           3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIP---GTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFS   79 (236)
T ss_pred             eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcC---CCccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence            789999999999999999998764   12478999999999977   334579999999998678999999998889999


Q ss_pred             ccccc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788          133 HHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD  211 (258)
Q Consensus       133 ~~L~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~  211 (258)
                      .+|.+ +++||+|.++||+|.|.++....++++||||||||||++++++++.... ...+++|+|++|+.+++++.++|+
T Consensus        80 ~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~  158 (236)
T cd06210          80 TYLETRAKVGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG-EPQEARLFFGVNTEAELFYLDELK  158 (236)
T ss_pred             hhhhhCcCCCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhhHHHHH
Confidence            99975 9999999999999999887655688999999999999999999998763 346899999999999999999999


Q ss_pred             HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                      ++++++++ ++++++++++.++|.+..|++.+.+ .+.+
T Consensus       159 ~l~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~l-~~~l  195 (236)
T cd06210         159 RLADSLPN-LTVRICVWRPGGEWEGYRGTVVDAL-REDL  195 (236)
T ss_pred             HHHHhCCC-eEEEEEEcCCCCCcCCccCcHHHHH-HHhh
Confidence            99999998 9999999987778888899998754 4444

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=100.00  E-value=1.6e-35  Score=249.39  Aligned_cols=195  Identities=52%  Similarity=0.984  Sum_probs=171.9

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      ++|++++.+++++..++|+.++......++||||+.|+++ .++....|+|||++.+.+.+.++|+||.+++|.+|+||+
T Consensus         1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~-~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~   79 (234)
T cd06183           1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAP-DDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLH   79 (234)
T ss_pred             CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEec-CCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHh
Confidence            3689999999999999999887533578999999999988 556677899999999877779999999988899999999


Q ss_pred             cCCCCCEEEEecccceeeecCCCC-ceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          137 EMHEGEYLPVKGPKGRLKYKVGQA-RAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       137 ~l~~Gd~v~v~gP~G~f~~~~~~~-~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      ++++||+|.++||+|.|.+.+... +++|||||||||||++++++++..+.....+++++|++|+.++.++.+||+++++
T Consensus        80 ~~~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l~~~~~  159 (234)
T cd06183          80 SLKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAK  159 (234)
T ss_pred             cCCCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhhHHHHHHHHH
Confidence            999999999999999988765554 7999999999999999999999876333578999999999999999999999998


Q ss_pred             hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +++++++++++++++++.|.+..|+++++.+++.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  196 (234)
T cd06183         160 KHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPP  196 (234)
T ss_pred             hCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCC
Confidence            8655599999999888888889999999888877653

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=2.1e-35  Score=248.40  Aligned_cols=193  Identities=26%  Similarity=0.483  Sum_probs=170.8

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      .+|++++.++++++.++|+.++.. ...|+||||+.|+++ ..+....|+|||++.+.+.+.++|+||..++|.+|.||+
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~-~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~   78 (231)
T cd06215           1 LRCVKIIQETPDVKTFRFAAPDGS-LFAYKPGQFLTLELE-IDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLH   78 (231)
T ss_pred             CeEEEEEEcCCCeEEEEEECCCCC-cCCcCCCCeEEEEEe-cCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHH
Confidence            378999999999999999998763 368999999999988 556667899999999987788999999988899999995


Q ss_pred             -cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          137 -EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       137 -~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                       ++++||++.+.||+|.|.+.....++++||||||||||++++++++.+.+ ...+++++|++|+.+++++.++|+++++
T Consensus        79 ~~~~~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~  157 (231)
T cd06215          79 DNLKVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR-PDADIVFIHSARSPADIIFADELEELAR  157 (231)
T ss_pred             hcCCCCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCcEEEEEecCChhhhhHHHHHHHHHH
Confidence             79999999999999998876554689999999999999999999998764 4468999999999999999999999999


Q ss_pred             hCCCCeEEEEEEcCCCCC-CCCccccccHHHHhhhCCCC
Q 042788          216 NSPNRFKVYYVLSQPTEV-WNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~-~~~~~G~i~~~~l~~~~~~~  253 (258)
                      ++++ ++++++++++++. |.+..|+++.+.+++..++.
T Consensus       158 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  195 (231)
T cd06215         158 RHPN-FRLHLILEQPAPGAWGGYRGRLNAELLALLVPDL  195 (231)
T ss_pred             HCCC-eEEEEEEccCCCCcccccCCcCCHHHHHHhcCCc
Confidence            8888 9999999987664 78889999998888776654

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=100.00  E-value=2.4e-35  Score=249.46  Aligned_cols=194  Identities=23%  Similarity=0.383  Sum_probs=168.3

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR  130 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~  130 (258)
                      +.....++|++++.++++++.++|+.++.. ...|+||||+.|+++   +....|+|||++.+.+.+.++|+||.+++|.
T Consensus         3 ~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~   78 (238)
T cd06211           3 NVKDFEGTVVEIEDLTPTIKGVRLKLDEPE-EIEFQAGQYVNLQAP---GYEGTRAFSIASSPSDAGEIELHIRLVPGGI   78 (238)
T ss_pred             CceEEeEEEEEEEecCCCEEEEEEEcCCCC-cCccCCCCeEEEEcC---CCCCccccccCCCCCCCCEEEEEEEECCCCc
Confidence            345568999999999999999999988763 258999999999977   3335799999999877789999999988899


Q ss_pred             cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788          131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE  209 (258)
Q Consensus       131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e  209 (258)
                      +|++|+ .+++||+|.++||+|.|.+..+..++++||||||||||++++++++.+++ ...+++|+|++|+.++++|.+|
T Consensus        79 ~s~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~  157 (238)
T cd06211          79 ATTYVHKQLKEGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG-DTRKITLFFGARTRAELYYLDE  157 (238)
T ss_pred             chhhHhhcCCCCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC-CCCcEEEEEecCChhhhccHHH
Confidence            999996 79999999999999998776555589999999999999999999998874 3468999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhCC
Q 042788          210 LDSFATNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHCP  251 (258)
Q Consensus       210 L~~l~~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~~  251 (258)
                      |+++++++++ ++++.+++++.  +.|.+..|++++ .+++.++
T Consensus       158 l~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~g~v~~-~l~~~~~  199 (238)
T cd06211         158 FEALEKDHPN-FKYVPALSREPPESNWKGFTGFVHD-AAKKHFK  199 (238)
T ss_pred             HHHHHHhCCC-eEEEEEECCCCCCcCcccccCcHHH-HHHHhcc
Confidence            9999999998 99999999753  568888999987 4666654

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>PLN02252 nitrate reductase [NADPH]

Probab=100.00  E-value=2.1e-35  Score=286.39  Aligned_cols=208  Identities=42%  Similarity=0.771  Sum_probs=183.6

Q ss_pred             CCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEE
Q 042788           46 RGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKM  125 (258)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~  125 (258)
                      ...+++.+|.+++|++++.++++++.|+|+++.......++||||+.|+++ .++....|+|||+|.+.+.+.++|+||.
T Consensus       626 ~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~-~~g~~~~R~YSpaS~~~~~g~lel~VK~  704 (888)
T PLN02252        626 PVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCAT-INGKLCMRAYTPTSSDDEVGHFELVIKV  704 (888)
T ss_pred             ccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEe-cCCeEEEeeeEecccCCCCCEEEEEEEE
Confidence            346778889999999999999999999999987654578999999999987 5677789999999999877899999999


Q ss_pred             e---------cCCccccccccCCCCCEEEEecccceeeec--------C--CCCceEEEEEcCccHHHHHHHHHHHHhCC
Q 042788          126 Y---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYK--------V--GQARAFGMIAGGTGITPMFQLTRAILENP  186 (258)
Q Consensus       126 ~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~--------~--~~~~~vvliagGtGItp~~sil~~l~~~~  186 (258)
                      +         ++|.+|++|+++++||+|.++||+|.|.+.        .  ...++++||||||||||+++++++++.++
T Consensus       705 ~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~  784 (888)
T PLN02252        705 YFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP  784 (888)
T ss_pred             EeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhcc
Confidence            8         569999999999999999999999987542        1  13478999999999999999999998765


Q ss_pred             CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCC-CCCCCccccccHHHHhhhCCCCC
Q 042788          187 KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPT-EVWNGGIGHVSKEMIQMHCPTPA  254 (258)
Q Consensus       187 ~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~-~~~~~~~G~i~~~~l~~~~~~~~  254 (258)
                      .+.++++|+|++|+.+|++|++||+++++++|++|+++++++++. ++|.+..|+++++++++.++.+.
T Consensus       785 ~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~  853 (888)
T PLN02252        785 EDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGG  853 (888)
T ss_pred             CCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCC
Confidence            456789999999999999999999999999987799999999875 78999999999999988886543

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=100.00  E-value=7.3e-36  Score=258.77  Aligned_cols=200  Identities=21%  Similarity=0.372  Sum_probs=169.8

Q ss_pred             CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------C
Q 042788           48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------E   99 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~   99 (258)
                      .+.. ++.+++|++++.+++++++++|+.++.. ...|+||||+.|+++..                            +
T Consensus         4 ~~~~-~~~~~~v~~~~~~~~d~~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (283)
T cd06188           4 VLGA-KKWECTVISNDNVATFIKELVLKLPSGE-EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKH   81 (283)
T ss_pred             cccc-ceEEEEEEEcccccchhhheEEecCCCc-eeeecCCceEEEEcCCccccccccccchhhhhHHhhhccccccccc
Confidence            4443 4557999999999999999999988753 25899999999998721                            0


Q ss_pred             CCeeeeeccccccCCCCCEEEEEEEE---------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCc
Q 042788          100 GNEVIRPYTPITLDSDIGYFELVVKM---------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGT  170 (258)
Q Consensus       100 g~~~~R~ySi~s~~~~~~~l~~~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGt  170 (258)
                      +....|+|||+|.|.+.+.++|+||.         .++|.+|+||+++++||+|.++||+|.|.+.. ..+++|||||||
T Consensus        82 ~~~~~R~ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~~vlIAgGt  160 (283)
T cd06188          82 DEPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD-TDREMVFIGGGA  160 (283)
T ss_pred             CCccccccCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECccccccccC-CCCcEEEEEecc
Confidence            23356999999999777899999996         45799999999999999999999999987753 457999999999


Q ss_pred             cHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhh
Q 042788          171 GITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQM  248 (258)
Q Consensus       171 GItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~  248 (258)
                      ||||+++|+++++.......+++|+|++|+.++++|.+||+++++++|+ ++++++++++.  +.|.+..|++++.+++.
T Consensus       161 GItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~  239 (283)
T cd06188         161 GMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPN-FKYHPVLSEPQPEDNWDGYTGFIHQVLLEN  239 (283)
T ss_pred             cHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCC-eEEEEEECCCCccCCCCCcceeecHHHHHH
Confidence            9999999999987764334689999999999999999999999999998 99999988765  67888899999987776


Q ss_pred             hCC
Q 042788          249 HCP  251 (258)
Q Consensus       249 ~~~  251 (258)
                      .+.
T Consensus       240 ~~~  242 (283)
T cd06188         240 YLK  242 (283)
T ss_pred             Hhc
Confidence            553

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=100.00  E-value=1.2e-34  Score=262.53  Aligned_cols=202  Identities=25%  Similarity=0.412  Sum_probs=171.7

Q ss_pred             CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCe--eeeeccccccCCCCCEEEEEEEE
Q 042788           48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNE--VIRPYTPITLDSDIGYFELVVKM  125 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~--~~R~ySi~s~~~~~~~l~~~Vk~  125 (258)
                      ...+..|++++|++++.++++++.++|+.++......|+||||+.|+++ .+|..  .+|+|||++.|.+ +.++|+||+
T Consensus       148 ~~~~~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~ySias~p~~-~~l~~~Vk~  225 (399)
T PRK13289        148 PGGWRGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLD-PEGEEYQEIRQYSLSDAPNG-KYYRISVKR  225 (399)
T ss_pred             cCCCCCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEe-cCCccccceeEEEeeeCCCC-CeEEEEEEE
Confidence            4445789999999999999999999999876433468999999999987 44533  3599999998864 789999999


Q ss_pred             ecCCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccc
Q 042788          126 YPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDI  204 (258)
Q Consensus       126 ~~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~  204 (258)
                      .++|.+|.||+ .+++||+|.++||+|.|.++....+++|||||||||||+++|++++.... ...+++++|++|+.+++
T Consensus       226 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~  304 (399)
T PRK13289        226 EAGGKVSNYLHDHVNVGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-PKRPVHFIHAARNGGVH  304 (399)
T ss_pred             CCCCeehHHHhhcCCCCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCChhhc
Confidence            88899999997 59999999999999999887655689999999999999999999998763 45789999999999999


Q ss_pred             ccHHHHHHHHhhCCCCeEEEEEEcCCCC-CCC----CccccccHHHHhhhCCCC
Q 042788          205 LLKDELDSFATNSPNRFKVYYVLSQPTE-VWN----GGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       205 ~~~~eL~~l~~~~~~~~~v~~~~s~~~~-~~~----~~~G~i~~~~l~~~~~~~  253 (258)
                      +|.+||+++++++|+ ++++++++++.+ .+.    +..|+++.+.+.+.++..
T Consensus       305 ~~~~eL~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~~  357 (399)
T PRK13289        305 AFRDEVEALAARHPN-LKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPDP  357 (399)
T ss_pred             hHHHHHHHHHHhCCC-cEEEEEECCCccccccCCcccccCcccHHHHHhhCCCC
Confidence            999999999999998 999999987643 222    246999988887776533

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=100.00  E-value=1.9e-35  Score=247.79  Aligned_cols=184  Identities=27%  Similarity=0.467  Sum_probs=163.8

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      ++|++++.+++++++++|+.++   ...|.||||+.|.++ . +  ..|+|||++.+.+++.++|+||.+++|.+|++|.
T Consensus         1 ~~v~~~~~~t~~~~~l~l~~~~---~~~~~pGQ~v~l~~~-~-~--~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~   73 (224)
T cd06189           1 CKVESIEPLNDDVYRVRLKPPA---PLDFLAGQYLDLLLD-D-G--DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVF   73 (224)
T ss_pred             CEEEEEEeCCCceEEEEEecCC---CcccCCCCEEEEEcC-C-C--CceeeecccCCCCCCeEEEEEEecCCCccHHHHH
Confidence            4789999999999999999876   378999999999987 2 2  3799999999876789999999988899999885


Q ss_pred             -cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          137 -EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       137 -~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                       .+++||+|.++||+|.|.+.+...++++|||||+||||++++++++.... ...+++|+|++|+.+++++.+||+++++
T Consensus        74 ~~l~~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~  152 (224)
T cd06189          74 EELKENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG-SKRPIHLYWGARTEEDLYLDELLEAWAE  152 (224)
T ss_pred             HhccCCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhccCHHHHHHHHH
Confidence             69999999999999998876655689999999999999999999998874 4468999999999999999999999999


Q ss_pred             hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhh
Q 042788          216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH  249 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~  249 (258)
                      ++++ ++++.++++++++|.+..|++++.+++..
T Consensus       153 ~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~~~  185 (224)
T cd06189         153 AHPN-FTYVPVLSEPEEGWQGRTGLVHEAVLEDF  185 (224)
T ss_pred             hCCC-eEEEEEeCCCCcCCccccccHHHHHHhhc
Confidence            8888 99999999988889888999998766554

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=100.00  E-value=5.6e-35  Score=248.37  Aligned_cols=197  Identities=22%  Similarity=0.354  Sum_probs=170.3

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC--CeeeeeccccccCCCCCEEEEEEEEecC
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--NEVIRPYTPITLDSDIGYFELVVKMYPK  128 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g--~~~~R~ySi~s~~~~~~~l~~~Vk~~~~  128 (258)
                      +..|+.++|++++.+++++.+++|+.+.......|.||||+.|.++ ..+  ....|+|||++.+.+ +.++|.||.+++
T Consensus         3 ~~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~~~   80 (247)
T cd06184           3 WRGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVK-LPGLGYRQIRQYSLSDAPNG-DYYRISVKREPG   80 (247)
T ss_pred             CCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEe-cCCCCCceeEEeEeccCCCC-CeEEEEEEEcCC
Confidence            4678999999999999999999999876533368999999999987 334  467899999999866 589999999888


Q ss_pred             Ccccccccc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccH
Q 042788          129 GRMAHHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLK  207 (258)
Q Consensus       129 G~~S~~L~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~  207 (258)
                      |.+|+||.+ +++||++.+.||+|.|.++....++++||||||||||++++++++..+. ...+++|+|++|+.++++|.
T Consensus        81 G~~s~~l~~~~~~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~-~~~~i~l~~~~r~~~~~~~~  159 (247)
T cd06184          81 GLVSNYLHDNVKVGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG-PGRPVTFIHAARNSAVHAFR  159 (247)
T ss_pred             CcchHHHHhcCCCCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC-CCCcEEEEEEcCchhhHHHH
Confidence            999999976 9999999999999998876545689999999999999999999998762 35789999999999999999


Q ss_pred             HHHHHHHhhCCCCeEEEEEEcCCCCCC----CCccccccHHHHhhhCC
Q 042788          208 DELDSFATNSPNRFKVYYVLSQPTEVW----NGGIGHVSKEMIQMHCP  251 (258)
Q Consensus       208 ~eL~~l~~~~~~~~~v~~~~s~~~~~~----~~~~G~i~~~~l~~~~~  251 (258)
                      ++|+++++++++ ++++++++++.+.+    .+..|+++.+.+.+..+
T Consensus       160 ~~l~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~~~  206 (247)
T cd06184         160 DELEELAARLPN-LKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLL  206 (247)
T ss_pred             HHHHHHHhhCCC-eEEEEEECCCCcccccccccccCccCHHHHhhccC
Confidence            999999988888 99999999876543    56789999887776443

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=100.00  E-value=1e-34  Score=244.41  Aligned_cols=190  Identities=22%  Similarity=0.397  Sum_probs=165.5

Q ss_pred             EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc-
Q 042788           58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-  136 (258)
Q Consensus        58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~-  136 (258)
                      +|++++.+++++++++|+.++.. ...|+||||+.|+++ .++...+|+|||++.+. .+.++|.||.+++|.+|.||+ 
T Consensus         2 ~v~~i~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~~s~~l~~   78 (231)
T cd06191           2 RVAEVRSETPDAVTIVFAVPGPL-QYGFRPGQHVTLKLD-FDGEELRRCYSLCSSPA-PDEISITVKRVPGGRVSNYLRE   78 (231)
T ss_pred             EEEEEEecCCCcEEEEEeCCCCC-CCCCCCCCeEEEEEe-cCCeEEeeeeeccCCCC-CCeEEEEEEECCCCccchHHHh
Confidence            68999999999999999987653 357999999999987 55667789999999887 588999999988899999997 


Q ss_pred             cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788          137 EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN  216 (258)
Q Consensus       137 ~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~  216 (258)
                      ++++||++.++||+|.|.+++...++++||||||||||++++++++.... ...+++++|++|+.++++|.+||++++++
T Consensus        79 ~~~~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~  157 (231)
T cd06191          79 HIQPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA-PESDFTLIHSARTPADMIFAQELRELADK  157 (231)
T ss_pred             cCCCCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhHHHHHHHHHHh
Confidence            79999999999999999887666689999999999999999999998763 34789999999999999999999999988


Q ss_pred             CCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhCCC
Q 042788          217 SPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       217 ~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +++ +++++++++++  ++|.+..|++..++.+...++
T Consensus       158 ~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~  194 (231)
T cd06191         158 PQR-LRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPD  194 (231)
T ss_pred             CCC-eEEEEEECCCCCCccccCCcccccHHHHHHhCcc
Confidence            888 99999998753  567777888887766655544

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=1.5e-34  Score=245.30  Aligned_cols=193  Identities=21%  Similarity=0.347  Sum_probs=169.3

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCC
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKG  129 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G  129 (258)
                      ..+...++|++++.+++++++++|+.++.  ...|+||||+.|.++ .+|....|+|||++.+. +.+.++|.||.+++|
T Consensus        14 ~~~~~~~~v~~i~~~~~~~~~i~l~~~~~--~~~~~pGQ~i~l~~~-~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~~G   90 (243)
T cd06216          14 SARELRARVVAVRPETADMVTLTLRPNRG--WPGHRAGQHVRLGVE-IDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDG   90 (243)
T ss_pred             ccceeEEEEEEEEEcCCCcEEEEEecCCC--CCCcCCCceEEEEEE-ECCeEEEEEEeccCCCcCCCCeEEEEEEEcCCC
Confidence            34666899999999999999999997764  468999999999987 55667789999999987 568999999998889


Q ss_pred             ccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHH
Q 042788          130 RMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKD  208 (258)
Q Consensus       130 ~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~  208 (258)
                      .+|.||+ .+++||+|.+.||+|.|.++.+..++++|||||+||||++++++++...+ +..++.++|++|+.+++++.+
T Consensus        91 ~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r~~~~~~~~~  169 (243)
T cd06216          91 LVSNWLVNHLAPGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTREDVIFAD  169 (243)
T ss_pred             cchhHHHhcCCCCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcCChhhhHHHH
Confidence            9999997 59999999999999998877655689999999999999999999998874 457899999999999999999


Q ss_pred             HHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788          209 ELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       209 eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                      ||+++++++++ ++++++++++     +..|+++.+.+++..++.
T Consensus       170 el~~l~~~~~~-~~~~~~~s~~-----~~~g~~~~~~l~~~~~~~  208 (243)
T cd06216         170 ELRALAAQHPN-LRLHLLYTRE-----ELDGRLSAAHLDAVVPDL  208 (243)
T ss_pred             HHHHHHHhCCC-eEEEEEEcCC-----ccCCCCCHHHHHHhccCc
Confidence            99999988888 9999888865     457899988888876654

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=100.00  E-value=8e-35  Score=244.62  Aligned_cols=187  Identities=25%  Similarity=0.449  Sum_probs=163.4

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      +++|++++.+++++++++|+.++.. ...|+||||+.|+++   +....|+|||++.+.+ +.++|+||.+++|.+|+||
T Consensus         3 ~~~V~~~~~~t~~~~~l~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~s~~l   77 (228)
T cd06209           3 EATVTEVERLSDSTIGLTLELDEAG-ALAFLPGQYVNLQVP---GTDETRSYSFSSAPGD-PRLEFLIRLLPGGAMSSYL   77 (228)
T ss_pred             eEEEEEEEEcCCCeEEEEEEcCCCC-cCccCCCCEEEEEeC---CCCcccccccccCCCC-CeEEEEEEEcCCCcchhhH
Confidence            6899999999999999999988742 478999999999987   3345799999998877 8999999998899999999


Q ss_pred             cc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788          136 RE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA  214 (258)
Q Consensus       136 ~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~  214 (258)
                      ++ +++||+|.++||+|.+.+... .++++||||||||||++++++++.... ...+++++|++|+.+++++.++|++++
T Consensus        78 ~~~l~~G~~v~v~gP~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~  155 (228)
T cd06209          78 RDRAQPGDRLTLTGPLGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVTRDADLVELDRLEALA  155 (228)
T ss_pred             HhccCCCCEEEEECCcccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecCCHHHhccHHHHHHHH
Confidence            76 999999999999999876544 488999999999999999999998874 456899999999999999999999999


Q ss_pred             hhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCC
Q 042788          215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP  251 (258)
Q Consensus       215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~  251 (258)
                      +++|+ ++++.++++++. |.+..|++++.+.+..++
T Consensus       156 ~~~~~-~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~  190 (228)
T cd06209         156 ERLPG-FSFRTVVADPDS-WHPRKGYVTDHLEAEDLN  190 (228)
T ss_pred             HhCCC-eEEEEEEcCCCc-cCCCcCCccHHHHHhhcc
Confidence            99998 999999997654 777889998865554443

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=100.00  E-value=1.2e-34  Score=247.24  Aligned_cols=193  Identities=21%  Similarity=0.348  Sum_probs=168.4

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR  130 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~  130 (258)
                      +..|.+++|++++.++++++.++|+.++.... .|+||||+.|.++ .++....|.||++|.|.+++.+.|.||+.++|.
T Consensus         2 ~~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~-~f~pGQ~i~v~l~-~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~   79 (266)
T COG1018           2 SAGFRRVTVTSVEPETDDVFSFTLEPPDGLRL-DFEPGQYITVGLP-NGGEPLLRAYSLSSAPDEDSLYRISVKREDGGG   79 (266)
T ss_pred             CCceEEEEEEEEEEecCceEEEEEEcCCCCcc-ccCCCCeEEEEec-CCCceeeEEEEeccCCCCCceEEEEEEEeCCCc
Confidence            35788999999999999999999999987422 7999999999999 667789999999999988789999999998899


Q ss_pred             cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788          131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE  209 (258)
Q Consensus       131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e  209 (258)
                      +|+||+ ++++||+|.+.+|.|.|.++.....+++|+|||+||||++||++.+...+ . .++.++|++|+.+++.|+||
T Consensus        80 ~S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-~-~~v~l~h~~R~~~~~af~de  157 (266)
T COG1018          80 GSNWLHDHLKVGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-P-ADVVLVHAARTPADLAFRDE  157 (266)
T ss_pred             ccHHHHhcCCCCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC-C-CCEEEEEecCChhhcchhhH
Confidence            999998 99999999999999999998766668999999999999999999998874 4 78999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788          210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       210 L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                       +.+.+++|+...+..+.+     |....|+++...+....++.
T Consensus       158 -~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~~  195 (266)
T COG1018         158 -LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLSAAPDG  195 (266)
T ss_pred             -HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhccCCCC
Confidence             999999998666666665     33445777777666555443

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=100.00  E-value=9.8e-35  Score=259.04  Aligned_cols=194  Identities=23%  Similarity=0.425  Sum_probs=168.1

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCC-CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKS-TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~-~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      |+.++|++++.+++++++++|+.++. ...+.|+||||+.|.++ .++....|+|||+|.|. ++.++|+||++++|.+|
T Consensus         1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~p~-~~~l~i~vk~~~~G~~S   78 (352)
T TIGR02160         1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRRE-VDGEELRRSYSICSAPA-PGEIRVAVKKIPGGLFS   78 (352)
T ss_pred             CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEe-cCCcEeeeeccccCCCC-CCcEEEEEEEeCCCcch
Confidence            56899999999999999999998764 22368999999999987 55667789999999885 47899999999899999


Q ss_pred             cccc-cCCCCCEEEEecccceeeecCCC--CceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788          133 HHFR-EMHEGEYLPVKGPKGRLKYKVGQ--ARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE  209 (258)
Q Consensus       133 ~~L~-~l~~Gd~v~v~gP~G~f~~~~~~--~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e  209 (258)
                      .||+ ++++||+|.+.||+|.|.++...  .++++||||||||||+++|+++++.++ ...+++|+|++|+.++++|.+|
T Consensus        79 ~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~e  157 (352)
T TIGR02160        79 TWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE-PRSTFTLVYGNRRTASVMFAEE  157 (352)
T ss_pred             HHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC-CCceEEEEEEeCCHHHHHHHHH
Confidence            9995 89999999999999998876432  378999999999999999999998763 3468999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       210 L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                      |+++++++|++++++++++++++.|.+..|+++...+.+.+
T Consensus       158 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l  198 (352)
T TIGR02160       158 LADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALL  198 (352)
T ss_pred             HHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHH
Confidence            99999988877999999998877776678898876665554

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=100.00  E-value=6.9e-35  Score=258.80  Aligned_cols=192  Identities=21%  Similarity=0.379  Sum_probs=168.0

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR  130 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~  130 (258)
                      +.+..+++|++++.++++++.++|+.+... .+.|+||||+.|.++ . +  ..|+|||+|.|.+.+.++|+||.+++|.
T Consensus        99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~~-~~~~~pGQfv~l~~~-~-~--~~R~ySias~p~~~~~l~~~ik~~~~G~  173 (339)
T PRK07609         99 PVKKLPCRVASLERVAGDVMRLKLRLPATE-RLQYLAGQYIEFILK-D-G--KRRSYSIANAPHSGGPLELHIRHMPGGV  173 (339)
T ss_pred             cceEEEEEEEEEEcCCCcEEEEEEEcCCCC-CCccCCCCeEEEECC-C-C--ceeeeecCCCCCCCCEEEEEEEecCCCc
Confidence            345568999999999999999999987542 478999999999987 2 3  3699999999977789999999998999


Q ss_pred             cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788          131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE  209 (258)
Q Consensus       131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e  209 (258)
                      +|+||. .+++||+|.++||+|.|.++....++++||||||||||+++|++++...+ ..++++|+|++|+.+++++.++
T Consensus       174 ~s~~l~~~l~~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~-~~~~i~l~~g~r~~~dl~~~e~  252 (339)
T PRK07609        174 FTDHVFGALKERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG-IQRPVTLYWGARRPEDLYLSAL  252 (339)
T ss_pred             cHHHHHHhccCCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEecCChHHhccHHH
Confidence            999995 79999999999999999876556689999999999999999999998764 4468999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhh
Q 042788          210 LDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMH  249 (258)
Q Consensus       210 L~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~  249 (258)
                      |++|++++|+ ++++++++++  ++.|.+..|++++.+++..
T Consensus       253 l~~~~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~  293 (339)
T PRK07609        253 AEQWAEELPN-FRYVPVVSDALDDDAWTGRTGFVHQAVLEDF  293 (339)
T ss_pred             HHHHHHhCCC-eEEEEEecCCCCCCCccCccCcHHHHHHhhc
Confidence            9999999998 9999999974  5678888999999766554

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=100.00  E-value=1.3e-34  Score=256.24  Aligned_cols=192  Identities=18%  Similarity=0.301  Sum_probs=164.7

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      ...++|++++.++++++.++|+.++.   ..|+||||+.|+++ . +....|+|||+|.|.+.+.++|+||++++|.+|+
T Consensus         9 ~~~~~V~~i~~~t~~v~~l~l~~~~~---~~f~pGQfv~l~~~-~-~~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~   83 (332)
T PRK10684          9 PNRMQVHSIVQETPDVWTISLICHDF---YPYRAGQYALVSIR-N-SAETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQ   83 (332)
T ss_pred             ceeEEEEEEEccCCCeEEEEEcCCCC---CCcCCCCEEEEEec-C-CCEeeeeecccCCCCCCCcEEEEEEEcCCCcchh
Confidence            44899999999999999999987653   78999999999987 2 3356799999999977788999999999999999


Q ss_pred             ccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788          134 HFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS  212 (258)
Q Consensus       134 ~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~  212 (258)
                      ||+ ++++||+|.++||+|.|.++....++++||||||||||+++|++++..+. ...+++|+|++|+.++++|.+||++
T Consensus        84 ~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~-~~~~v~l~y~~r~~~~~~~~~el~~  162 (332)
T PRK10684         84 WLTRDVKRGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR-PQADVQVIFNVRTPQDVIFADEWRQ  162 (332)
T ss_pred             HHHhcCCCCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCCEEEEEeCCChHHhhhHHHHHH
Confidence            995 89999999999999999876555678999999999999999999998763 3468999999999999999999999


Q ss_pred             HHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788          213 FATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       213 l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                      +++++++ ++++++.+++. ......|+++.+.+++.++++
T Consensus       163 l~~~~~~-~~~~~~~~~~~-~~~~~~grl~~~~l~~~~~~~  201 (332)
T PRK10684        163 LKQRYPQ-LNLTLVAENNA-TEGFIAGRLTRELLQQAVPDL  201 (332)
T ss_pred             HHHHCCC-eEEEEEeccCC-CCCccccccCHHHHHHhcccc
Confidence            9999998 88887776532 122257999998888766654

>PRK08051 fre FMN reductase; Validated

Probab=100.00  E-value=8.9e-35  Score=245.06  Aligned_cols=188  Identities=21%  Similarity=0.299  Sum_probs=163.8

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      +.+++|++++.++++++.++|+.++.   ..|+||||+.++++ .   ...|+|||+|.|.+++.++|.|+..+.|..+.
T Consensus         2 ~~~~~v~~i~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~-~---~~~r~ySias~p~~~~~l~~~v~~~~~~~~~~   74 (232)
T PRK08051          2 TLSCKVTSVEAITDTVYRVRLVPEAP---FSFRAGQYLMVVMG-E---KDKRPFSIASTPREKGFIELHIGASELNLYAM   74 (232)
T ss_pred             eeEEEEEEEecCCCCeEEEEEecCCC---CccCCCCEEEEEcC-C---CcceeecccCCCCCCCcEEEEEEEcCCCcchH
Confidence            35799999999999999999987653   68999999999986 2   24699999999876688999999987777666


Q ss_pred             cc-ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788          134 HF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS  212 (258)
Q Consensus       134 ~L-~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~  212 (258)
                      ++ .++++||+|.+.||+|.|.+.++..+++||||||+||||++++++++...+ ...++.++|++|+.++++|.+||++
T Consensus        75 ~~~~~l~~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~-~~~~v~l~~g~r~~~~~~~~~el~~  153 (232)
T PRK08051         75 AVMERILKDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG-PNRPITLYWGGREEDHLYDLDELEA  153 (232)
T ss_pred             HHHHHcCCCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC-CCCcEEEEEEeccHHHhhhhHHHHH
Confidence            65 699999999999999998776555678999999999999999999998864 4468999999999999999999999


Q ss_pred             HHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          213 FATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       213 l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                      +++++++ ++++.+++++++.|.+..|++++.+++...
T Consensus       154 l~~~~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~  190 (232)
T PRK08051        154 LALKHPN-LHFVPVVEQPEEGWQGKTGTVLTAVMQDFG  190 (232)
T ss_pred             HHHHCCC-cEEEEEeCCCCCCcccceeeehHHHHhhcc
Confidence            9999988 999999998888898889999987665443

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=100.00  E-value=2.4e-34  Score=244.69  Aligned_cols=183  Identities=17%  Similarity=0.221  Sum_probs=156.6

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      .|.+++|++++.+++++++++|+.+.    ..|+||||+.|.++ .+|....|+|||+|.|.+ +.++|+||.+++|.+|
T Consensus         3 ~~~~~~V~~i~~~t~~v~~l~l~~~~----~~~~pGQfv~l~~~-~~g~~~~R~ySias~p~~-~~l~~~ik~~~~G~~S   76 (248)
T PRK10926          3 DWVTGKVTKVQNWTDALFSLTVHAPV----DPFTAGQFTKLGLE-IDGERVQRAYSYVNAPDN-PDLEFYLVTVPEGKLS   76 (248)
T ss_pred             ccEEEEEEEEEEcCCCeEEEEEeCCC----CCCCCCCEEEEEEe-cCCcEEEeeecccCCCCC-CeEEEEEEEeCCCCcC
Confidence            68899999999999999999998752    36999999999987 557677899999999865 5899999999999999


Q ss_pred             cccccCCCCCEEEEeccc-ceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788          133 HHFREMHEGEYLPVKGPK-GRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL  210 (258)
Q Consensus       133 ~~L~~l~~Gd~v~v~gP~-G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL  210 (258)
                      +||+++++||+|.++||. |.|.++.. ..++++||||||||||+++|++++.... ...+++|+|++|+.+|++|.+||
T Consensus        77 ~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~~el  155 (248)
T PRK10926         77 PRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE-RFKNLVLVHAARYAADLSYLPLM  155 (248)
T ss_pred             hHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC-CCCcEEEEEeCCcHHHHHHHHHH
Confidence            999999999999999987 44665533 3379999999999999999999987543 44689999999999999999999


Q ss_pred             HHHHhhCCCCeEEEEEEcCCCCCCCCccccccH
Q 042788          211 DSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSK  243 (258)
Q Consensus       211 ~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~  243 (258)
                      ++|++++|++++++.++++++. +.+..|++++
T Consensus       156 ~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~  187 (248)
T PRK10926        156 QELEQRYEGKLRIQTVVSRETA-PGSLTGRVPA  187 (248)
T ss_pred             HHHHHhCcCCEEEEEEECCCCC-CCCcCCccch
Confidence            9999988744999999998542 3345788876

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=100.00  E-value=1.2e-34  Score=245.59  Aligned_cols=182  Identities=18%  Similarity=0.286  Sum_probs=159.6

Q ss_pred             EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc
Q 042788           58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE  137 (258)
Q Consensus        58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~  137 (258)
                      +|++++.+++++++++|+.+.   ...|+||||+.|+++..++...+|+|||++.+.+ +.++|.||++++|.+|+||++
T Consensus         1 ~v~~~~~~t~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~~s~~l~~   76 (241)
T cd06195           1 TVLKRRDWTDDLFSFRVTRDI---PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILVPDGPLTPRLFK   76 (241)
T ss_pred             CeEEEEEcCCCEEEEEEcCCC---CCccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEecCCCCchHHhc
Confidence            478999999999999999876   3789999999999983336678899999998876 899999999889999999999


Q ss_pred             CCCCCEEEEe-cccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          138 MHEGEYLPVK-GPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       138 l~~Gd~v~v~-gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      +++||.|.+. ||+|.|.+++. ..++++||||||||||++++++++.... ...+++++|++|+.+|+++.+||+++++
T Consensus        77 l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~  155 (241)
T cd06195          77 LKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFDKIVLVHGVRYAEELAYQDEIEALAK  155 (241)
T ss_pred             CCCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-CCCcEEEEEccCCHHHhhhHHHHHHHHh
Confidence            9999999999 99999987654 4689999999999999999999998652 4468999999999999999999999988


Q ss_pred             h-CCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788          216 N-SPNRFKVYYVLSQPTEVWNGGIGHVSKEMI  246 (258)
Q Consensus       216 ~-~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l  246 (258)
                      + +++ ++++++++++++.| +..|++++.+.
T Consensus       156 ~~~~~-~~~~~~~s~~~~~~-~~~g~v~~~l~  185 (241)
T cd06195         156 QYNGK-FRYVPIVSREKENG-ALTGRIPDLIE  185 (241)
T ss_pred             hcCCC-EEEEEEECcCCccC-CCceEhHHhhh
Confidence            7 455 99999999887777 67899987543

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=2.4e-34  Score=242.34  Aligned_cols=190  Identities=23%  Similarity=0.447  Sum_probs=164.6

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      +++|++++.+++++++++|+.+.+. ...|+||||+.++++   +....|+|||++.|.+.+.++|+||.+++|.+|.+|
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l   77 (232)
T cd06212           2 VGTVVAVEALTHDIRRLRLRLEEPE-PIKFFAGQYVDITVP---GTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFL   77 (232)
T ss_pred             ceEEEEEeecCCCeEEEEEEcCCCC-cCCcCCCCeEEEEcC---CCCcccccccCCCCCCCCEEEEEEEECCCCchhhHH
Confidence            5799999999999999999987653 468999999999987   333679999999997778999999998889999999


Q ss_pred             c-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788          136 R-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA  214 (258)
Q Consensus       136 ~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~  214 (258)
                      . .+++||+|.+.||+|.|.+.....++++|||||+||||++++++++...+ ...+++++|++|+.+++++.+||++++
T Consensus        78 ~~~l~~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~  156 (232)
T cd06212          78 DDGLAVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-SDRPVRFFYGARTARDLFYLEEIAALG  156 (232)
T ss_pred             hhcCCCCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-CCCcEEEEEeccchHHhccHHHHHHHH
Confidence            7 49999999999999998776555689999999999999999999999874 446899999999999999999999999


Q ss_pred             hhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhCCC
Q 042788          215 TNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       215 ~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +++++ ++++++++++.  +.|.+..|++++. +.+.+++
T Consensus       157 ~~~~~-~~~~~~~s~~~~~~~~~~~~g~~~~~-~~~~~~~  194 (232)
T cd06212         157 EKIPD-FTFIPALSESPDDEGWSGETGLVTEV-VQRNEAT  194 (232)
T ss_pred             HhCCC-EEEEEEECCCCCCCCCcCCcccHHHH-HHhhccC
Confidence            88887 99998998764  5677788999874 5555544

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=100.00  E-value=9.4e-34  Score=239.91  Aligned_cols=193  Identities=24%  Similarity=0.396  Sum_probs=169.2

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCc-cCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTS-ILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~-~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      +.++|++++.+++++++++|+.+.+.. ...|+||||+.|.++ ..|....|+||+++.+.+ +.++|+|+.+++|.+|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~-~~g~~~~r~ysi~s~~~~-~~l~~~i~~~~~G~~s~   79 (241)
T cd06214           2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVP-IDGEEVRRSYSICSSPGD-DELRITVKRVPGGRFSN   79 (241)
T ss_pred             ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEee-cCCCeeeeeeeecCCCCC-CcEEEEEEEcCCCccch
Confidence            578999999999999999999986521 257999999999998 556678899999998766 48999999988999999


Q ss_pred             ccc-cCCCCCEEEEecccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788          134 HFR-EMHEGEYLPVKGPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD  211 (258)
Q Consensus       134 ~L~-~l~~Gd~v~v~gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~  211 (258)
                      ||. ++++||++.+.||+|.|.+.++ ..++++||||||||||++++++++.... ...+++++|++|+.+++++.+||+
T Consensus        80 ~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~  158 (241)
T cd06214          80 WANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE-PASRVTLVYGNRTEASVIFREELA  158 (241)
T ss_pred             hHHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhHHHHHH
Confidence            996 8999999999999999887765 5689999999999999999999998764 357899999999999999999999


Q ss_pred             HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                      ++++.+++++++.+++++++..|.+..|+++++.+.+.+
T Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  197 (241)
T cd06214         159 DLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALL  197 (241)
T ss_pred             HHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhh
Confidence            999888866999999998777787788999987776654

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=8.6e-34  Score=238.23  Aligned_cols=186  Identities=22%  Similarity=0.367  Sum_probs=159.3

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      +++|++++.+++++++++|+.++.   ..|+||||+.|+++   +....|+|||++.|.+.+.++|+||..++|.+|++|
T Consensus         2 ~~~v~~~~~~t~~~~~~~l~~~~~---~~~~pGQ~~~l~~~---~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l   75 (227)
T cd06213           2 RGTIVAQERLTHDIVRLTVQLDRP---IAYKAGQYAELTLP---GLPAARSYSFANAPQGDGQLSFHIRKVPGGAFSGWL   75 (227)
T ss_pred             eEEEEEEeecCCCEEEEEEecCCC---CCcCCCCEEEEEeC---CCCcccccccCCCCCCCCEEEEEEEECCCCcchHHH
Confidence            578999999999999999998653   68999999999987   223689999999987778999999998889999998


Q ss_pred             -ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788          136 -REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA  214 (258)
Q Consensus       136 -~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~  214 (258)
                       ..+++||+|.++||+|.|.+.. ..++++||||||||||++++++++..++ ..++++++|++|+.+|+++.+||++++
T Consensus        76 ~~~l~~G~~v~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~~l~~l~  153 (227)
T cd06213          76 FGADRTGERLTVRGPFGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG-TKRDVTLLFGARTQRDLYALDEIAAIA  153 (227)
T ss_pred             HhcCCCCCEEEEeCCCcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhccHHHHHHHH
Confidence             5799999999999999988754 3478999999999999999999998864 456799999999999999999999999


Q ss_pred             hhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhC
Q 042788          215 TNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       215 ~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~  250 (258)
                      ++++.+++++.++++++  ..|.+..|++++. +.+..
T Consensus       154 ~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~-l~~~~  190 (227)
T cd06213         154 ARWRGRFRFIPVLSEEPADSSWKGARGLVTEH-IAEVL  190 (227)
T ss_pred             HhccCCeEEEEEecCCCCCCCccCCcccHHHH-HHhhc
Confidence            77544499999888754  3477888998875 44443

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=100.00  E-value=7.3e-34  Score=237.97  Aligned_cols=182  Identities=24%  Similarity=0.413  Sum_probs=160.3

Q ss_pred             EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc-
Q 042788           59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE-  137 (258)
Q Consensus        59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~-  137 (258)
                      |++++.+++++++++|+.++.   ..|+||||+.|+++ ..+ ...|+|||+|.+.+.+.++|+||..++|.+|+||++ 
T Consensus         1 v~~~~~~~~~~~~~~l~~~~~---~~~~pGq~i~l~~~-~~~-~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~   75 (224)
T cd06187           1 VVSVERLTHDIAVVRLQLDQP---LPFWAGQYVNVTVP-GRP-RTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDE   75 (224)
T ss_pred             CeeeeecCCCEEEEEEEeCCC---CCcCCCceEEEEcC-CCC-CcceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhc
Confidence            468899999999999998875   78999999999987 222 367999999998877899999999888999999976 


Q ss_pred             CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhC
Q 042788          138 MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS  217 (258)
Q Consensus       138 l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~  217 (258)
                      +++||+|.+.||+|.|.+.+...++++|||||+||||++++++++..++ ...++.++|++|+.+++++.++|+++++++
T Consensus        76 l~~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~  154 (224)
T cd06187          76 LKVGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGARTERDLYDLEGLLALAARH  154 (224)
T ss_pred             CccCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhhcChHHHHHHHHhC
Confidence            9999999999999998876655688999999999999999999998864 446899999999999999999999999998


Q ss_pred             CCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       218 ~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      ++ ++++++++++++.|.+..|++++.+.+
T Consensus       155 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~  183 (224)
T cd06187         155 PW-LRVVPVVSHEEGAWTGRRGLVTDVVGR  183 (224)
T ss_pred             CC-eEEEEEeCCCCCccCCCcccHHHHHHH
Confidence            88 999999988776688888999886543

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=100.00  E-value=8.4e-34  Score=238.95  Aligned_cols=186  Identities=27%  Similarity=0.452  Sum_probs=159.2

Q ss_pred             EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc-c
Q 042788           59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-E  137 (258)
Q Consensus        59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~-~  137 (258)
                      |++++.+++++++++|+.++.   ..|+||||+.|+++   +....|+|||++.+.+.+.++|+||..++|.+|.+|+ .
T Consensus         1 ~~~~~~~t~~~~~~~l~~~~~---~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~   74 (232)
T cd06190           1 LVDVRELTHDVAEFRFALDGP---ADFLPGQYALLALP---GVEGARAYSMANLANASGEWEFIIKRKPGGAASNALFDN   74 (232)
T ss_pred             CCceEEcCCCEEEEEEEcCCc---cccCCCCEEEEECC---CCCcccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhc
Confidence            467889999999999998764   57999999999987   2335799999999877789999999988899999997 4


Q ss_pred             CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC-CCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788          138 MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP-KDKTNVHLIYANVTVGDILLKDELDSFATN  216 (258)
Q Consensus       138 l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~-~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~  216 (258)
                      +++||+|.++||+|.+.+.++..++++|||||+||||++++++++.... ....+++++|++|+.+++++.+||+++++.
T Consensus        75 ~~~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~  154 (232)
T cd06190          75 LEPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSALVAL  154 (232)
T ss_pred             CCCCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHHHHHHHHh
Confidence            7999999999999997765555689999999999999999999998752 234789999999999999999999999988


Q ss_pred             CCCCeEEEEEEcCCCC----CCCCccccccHHHHhhhCCC
Q 042788          217 SPNRFKVYYVLSQPTE----VWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       217 ~~~~~~v~~~~s~~~~----~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +++ ++++++++++.+    .|.+..|++++ .+++.+++
T Consensus       155 ~~~-~~~~~~~s~~~~~~~~~~~~~~g~v~~-~l~~~~~~  192 (232)
T cd06190         155 GAR-LRVTPAVSDAGSGSAAGWDGPTGFVHE-VVEATLGD  192 (232)
T ss_pred             CCC-EEEEEEeCCCCCCcCCCccCCcCcHHH-HHHhhccC
Confidence            777 999999887643    47788899987 56666544

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=100.00  E-value=1.2e-33  Score=247.36  Aligned_cols=191  Identities=19%  Similarity=0.246  Sum_probs=159.8

Q ss_pred             CCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecC----CCC-eeeeeccccccCCCC----
Q 042788           51 PENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDS----EGN-EVIRPYTPITLDSDI----  116 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----~g~-~~~R~ySi~s~~~~~----  116 (258)
                      +....+++|++++.++     +++++++|+.+..   +.|.||||+.|.++..    +|. ...|+|||+|.|.++    
T Consensus        21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~---~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~   97 (307)
T PLN03116         21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDG   97 (307)
T ss_pred             CCCCEEEEEEeeEEcccCCCCCceEEEEEecCCC---CceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCC
Confidence            3445589999999999     8999999998754   7899999999976521    122 247999999998432    


Q ss_pred             CEEEEEEEEe-------------cCCccccccccCCCCCEEEEecccceeeecC--CCCceEEEEEcCccHHHHHHHHHH
Q 042788          117 GYFELVVKMY-------------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV--GQARAFGMIAGGTGITPMFQLTRA  181 (258)
Q Consensus       117 ~~l~~~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--~~~~~vvliagGtGItp~~sil~~  181 (258)
                      ..++|+||+.             ++|.+|.||+++++||+|.++||+|.|.+.+  +..+++|||||||||||+++|+++
T Consensus        98 ~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~  177 (307)
T PLN03116         98 KTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRR  177 (307)
T ss_pred             CEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHH
Confidence            3799999986             6899999998899999999999999977632  345789999999999999999998


Q ss_pred             HHhCCC----CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          182 ILENPK----DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       182 l~~~~~----~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      ++....    ...+++|+|++|+.+|++|.+||++|++++|++|+++.+++++++.|.+..|++++.
T Consensus       178 ~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~  244 (307)
T PLN03116        178 MFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDK  244 (307)
T ss_pred             HHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhH
Confidence            876431    125799999999999999999999999999844999999999888888778888874

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=100.00  E-value=1.2e-33  Score=245.41  Aligned_cols=175  Identities=21%  Similarity=0.358  Sum_probs=148.9

Q ss_pred             CCCCcEEEEEEEEEEeCCCEeEEEEECCCC--CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEec
Q 042788           50 DPENFKEFKLTKRTPISHNTAKFRFALPKS--TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYP  127 (258)
Q Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~--~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~  127 (258)
                      +|..+++++|++++++++++..++|+...+  .....|+||||+.|+++ ..+   .||||++|.|.+++.++|+||.  
T Consensus         1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~-~~~---~~pySias~p~~~~~l~l~Ik~--   74 (289)
T PRK08345          1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIP-GVG---EVPISICSSPTRKGFFELCIRR--   74 (289)
T ss_pred             CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcC-CCC---ceeeEecCCCCCCCEEEEEEEe--
Confidence            356678999999999999977777775432  22467999999999987 323   3899999998777899999998  


Q ss_pred             CCccccccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccccc
Q 042788          128 KGRMAHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILL  206 (258)
Q Consensus       128 ~G~~S~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~  206 (258)
                      .|.+|++|+++++||+|.++||+|. |..+....++++||||||||||+++|+++++.+.....+++|+|++|+.+|++|
T Consensus        75 ~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~~~  154 (289)
T PRK08345         75 AGRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLF  154 (289)
T ss_pred             CChHHHHHHhCCCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHhhH
Confidence            6999999999999999999999998 655444457899999999999999999998876434578999999999999999


Q ss_pred             HHHHHHHHhhCCCCeEEEEEEcCCC
Q 042788          207 KDELDSFATNSPNRFKVYYVLSQPT  231 (258)
Q Consensus       207 ~~eL~~l~~~~~~~~~v~~~~s~~~  231 (258)
                      .|||++|++++++ +++++++++++
T Consensus       155 ~deL~~l~~~~~~-~~~~~~~s~~~  178 (289)
T PRK08345        155 YDELIKDLAEAEN-VKIIQSVTRDP  178 (289)
T ss_pred             HHHHHHHHhcCCC-EEEEEEecCCC
Confidence            9999999888888 99999999753

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=100.00  E-value=3.5e-33  Score=242.23  Aligned_cols=192  Identities=21%  Similarity=0.299  Sum_probs=161.1

Q ss_pred             CCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecC---CCC-eeeeeccccccCCC----CC
Q 042788           51 PENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDS---EGN-EVIRPYTPITLDSD----IG  117 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~---~g~-~~~R~ySi~s~~~~----~~  117 (258)
                      +.....++|++++.++     +++++++|+.+.   ...|+||||+.|.++..   +|. ...|+|||+|.|.+    ++
T Consensus         5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~   81 (286)
T cd06208           5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG---KLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGK   81 (286)
T ss_pred             CCCCeEEEEEeceeccCCCCCcceEEEEEeCCC---cccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCC
Confidence            4556679999999999     699999999854   37899999999986510   122 34799999998743    47


Q ss_pred             EEEEEEEEecC----------CccccccccCCCCCEEEEecccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCC
Q 042788          118 YFELVVKMYPK----------GRMAHHFREMHEGEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENP  186 (258)
Q Consensus       118 ~l~~~Vk~~~~----------G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~  186 (258)
                      .++|+||..+.          |.+|.||+++++||+|.+.||+|.|.+.+ ...++++||||||||||++++++++....
T Consensus        82 ~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~  161 (286)
T cd06208          82 TLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREK  161 (286)
T ss_pred             EEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh
Confidence            89999999765          99999999999999999999999976543 33468999999999999999999988651


Q ss_pred             ----CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHH
Q 042788          187 ----KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEM  245 (258)
Q Consensus       187 ----~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~  245 (258)
                          ....+++|+|++|+.++++|.++|++++++++++++++++++++++.|.+..|++++.+
T Consensus       162 ~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i  224 (286)
T cd06208         162 HADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRI  224 (286)
T ss_pred             hcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHH
Confidence                23467999999999999999999999999988669999999998888888889988754

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=100.00  E-value=1.3e-32  Score=276.19  Aligned_cols=213  Identities=29%  Similarity=0.598  Sum_probs=186.0

Q ss_pred             ccCCCCCCCCCCcEEEEEEEEE---EeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCE
Q 042788           42 IKKSRGSLDPENFKEFKLTKRT---PISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGY  118 (258)
Q Consensus        42 ~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~  118 (258)
                      .+..+..+++.+|.+++|++++   ..+++++.++|+.|+....+.|.|||||.|+++ .++....|+|||+|.|.+.+.
T Consensus       902 ~~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~-~~g~~~~R~YS~~S~p~~~~~  980 (1167)
T PTZ00306        902 LQKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGD-WDGQQLIGYYSPITLPDDLGV  980 (1167)
T ss_pred             HhccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEee-eCCeEEEEEeccCCCCCCCCe
Confidence            5567889999999999999998   468999999999987644568999999999987 567778899999999987789


Q ss_pred             EEEEEEEecCCccccccccCCCCCEEEEecccc----------eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC--
Q 042788          119 FELVVKMYPKGRMAHHFREMHEGEYLPVKGPKG----------RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP--  186 (258)
Q Consensus       119 l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G----------~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~--  186 (258)
                      ++|+|| .++|.+|+||+++++||+|.++||+|          .|.++....++++||||||||||+++|++++++++  
T Consensus       981 i~l~Vr-~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~ 1059 (1167)
T PTZ00306        981 ISILAR-GDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYV 1059 (1167)
T ss_pred             EEEEEE-cCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCccc
Confidence            999998 46899999999999999999999877          35555555689999999999999999999998764  


Q ss_pred             CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCCCCC
Q 042788          187 KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD  256 (258)
Q Consensus       187 ~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~~~~  256 (258)
                      .+.++++|+|++|+.++++|++||++|++++|++|++++++++++++|.+..|++++.++++.++++..+
T Consensus      1060 ~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~ 1129 (1167)
T PTZ00306       1060 DSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKD 1129 (1167)
T ss_pred             CCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCC
Confidence            1346899999999999999999999999999988999999999888898889999999999888765433

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=100.00  E-value=6.8e-33  Score=231.46  Aligned_cols=176  Identities=27%  Similarity=0.481  Sum_probs=155.6

Q ss_pred             EEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCC
Q 042788           61 KRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHE  140 (258)
Q Consensus        61 ~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~  140 (258)
                      +++.++++++.++|+.++   ...|+||||+.|.++ ..+....|+|||++.|.+.+.++|+||.+++|.+|+||+++++
T Consensus         2 ~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~~   77 (223)
T cd00322           2 ATEDVTDDVRLFRLQLPN---GFSFKPGQYVDLHLP-GDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLKP   77 (223)
T ss_pred             ceEEecCCeEEEEEecCC---CCCcCCCcEEEEEec-CCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCCC
Confidence            467889999999999876   378999999999998 5556788999999999777899999999888999999999999


Q ss_pred             CCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCC
Q 042788          141 GEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR  220 (258)
Q Consensus       141 Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~  220 (258)
                      ||++.++||+|.|.......++++||||||||||++++++++.... ...+++++|++|+.+++++.+||+++++.+++ 
T Consensus        78 G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~-  155 (223)
T cd00322          78 GDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGARTPADLLFLDELEELAKEGPN-  155 (223)
T ss_pred             CCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecCCHHHhhHHHHHHHHHHhCCC-
Confidence            9999999999998655556789999999999999999999998863 44789999999999999999999999998877 


Q ss_pred             eEEEEEEcCCCCCCCCcccccc
Q 042788          221 FKVYYVLSQPTEVWNGGIGHVS  242 (258)
Q Consensus       221 ~~v~~~~s~~~~~~~~~~G~i~  242 (258)
                      ++++++++++...+.+..+++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~  177 (223)
T cd00322         156 FRLVLALSRESEAKLGPGGRID  177 (223)
T ss_pred             eEEEEEecCCCCCCCcccceee
Confidence            9999999988777766666655

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=100.00  E-value=5.3e-33  Score=252.21  Aligned_cols=195  Identities=21%  Similarity=0.373  Sum_probs=166.5

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------CCCeee
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------EGNEVI  104 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~g~~~~  104 (258)
                      ...+++|++++.+++++++++|+.++.. ...|+||||+.|+++..                            .+....
T Consensus       132 ~~~~~~V~~~~~ls~~i~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (409)
T PRK05464        132 KKWECTVISNDNVATFIKELVLKIPEGE-EVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVI  210 (409)
T ss_pred             eEEEEEEEEcccCCchhheEEEecCCCC-cccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCcee
Confidence            3347999999999999999999998542 35899999999998621                            123568


Q ss_pred             eeccccccCCCCCEEEEEEEE---------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHH
Q 042788          105 RPYTPITLDSDIGYFELVVKM---------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPM  175 (258)
Q Consensus       105 R~ySi~s~~~~~~~l~~~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~  175 (258)
                      |+|||+|.|.+++.++|+||.         .++|.+|.||+++++||+|.+.||+|.|.+.. ..++++||||||||||+
T Consensus       211 R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~ivlIAgGtGIaP~  289 (409)
T PRK05464        211 RAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPM  289 (409)
T ss_pred             eeeccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcEecC-CCceEEEEEeccChhHH
Confidence            999999999877899999997         36799999999999999999999999987653 45899999999999999


Q ss_pred             HHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhhC
Q 042788          176 FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       176 ~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~~  250 (258)
                      ++++++++++.....+++|+|++|+.++++|.+||+++++++|+ ++++++++++  ++.|.+..|++++.+.++.+
T Consensus       290 ~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l  365 (409)
T PRK05464        290 RSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPN-FKWHVALSDPLPEDNWTGYTGFIHNVLYENYL  365 (409)
T ss_pred             HHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCC-eEEEEEEcCCCCCCCCCCccceeCHHHHHhhh
Confidence            99999887764345689999999999999999999999999998 9999998865  35688889999987766554

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=6.3e-33  Score=231.49  Aligned_cols=182  Identities=27%  Similarity=0.483  Sum_probs=154.2

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecC-Cccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK-GRMAHH  134 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~-G~~S~~  134 (258)
                      +++|++++.+++++++++|+.++.   ..|+||||+.|+++..++....|+|||+|.+.+ +.++|+||.+++ |.+|++
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~~g~~s~~   77 (218)
T cd06196           2 TVTLLSIEPVTHDVKRLRFDKPEG---YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSYPDHDGVTEQ   77 (218)
T ss_pred             ceEEEEEEEcCCCeEEEEEcCCCc---CCCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEcCCCCcHhHH
Confidence            578999999999999999998764   689999999999873222357899999999875 899999999865 788999


Q ss_pred             cccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788          135 FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA  214 (258)
Q Consensus       135 L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~  214 (258)
                      |+++++||++.++||+|.|...    ++++||||||||||++++++++...+ ...+++|+|++|+.++++|.+||+++.
T Consensus        78 l~~l~~G~~v~i~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~  152 (218)
T cd06196          78 LGRLQPGDTLLIEDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG-KLEGNTLIFANKTEKDIILKDELEKML  152 (218)
T ss_pred             HHhCCCCCEEEEECCccceEec----CceEEEecCCCcChHHHHHHHHHhCC-CCceEEEEEecCCHHHHhhHHHHHHhh
Confidence            9999999999999999998653    57899999999999999999998863 446899999999999999999999984


Q ss_pred             hhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                          + +++++++++++.. ....|+++.+.+++.+++
T Consensus       153 ----~-~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~~  184 (218)
T cd06196         153 ----G-LKFINVVTDEKDP-GYAHGRIDKAFLKQHVTD  184 (218)
T ss_pred             ----c-ceEEEEEcCCCCC-CeeeeEECHHHHHHhcCC
Confidence                3 7777788875432 225799998888877654

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=100.00  E-value=1.3e-32  Score=244.07  Aligned_cols=192  Identities=20%  Similarity=0.258  Sum_probs=158.5

Q ss_pred             CCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEec--CCCCe-eeeeccccccCC----CCCEE
Q 042788           52 ENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKD--SEGNE-VIRPYTPITLDS----DIGYF  119 (258)
Q Consensus        52 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~g~~-~~R~ySi~s~~~----~~~~l  119 (258)
                      ..-..++|+++..++.     ++++++|+.+.   .+.|.||||+.|..+.  .+|.. ..|+|||+|.+.    +++.+
T Consensus        88 ~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~---~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l  164 (367)
T PLN03115         88 KEPYTGRCLLNTKITGDDAPGETWHMVFSTEG---EIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTV  164 (367)
T ss_pred             CCCeEEEEEeecccccCCCCCceEEEEEcCCC---CCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEE
Confidence            3345789999999977     89999998665   3789999999998751  23433 579999999873    24689


Q ss_pred             EEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCC-
Q 042788          120 ELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENPKD-  188 (258)
Q Consensus       120 ~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~-  188 (258)
                      +|+||+.         ..|.+|+||+++++||+|.+.||+|.|.+.+ +..++++||||||||||++++++++...... 
T Consensus       165 ~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~  244 (367)
T PLN03115        165 SLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDD  244 (367)
T ss_pred             EEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhcccc
Confidence            9999975         3688999999999999999999999965433 4456899999999999999999987543211 


Q ss_pred             ---CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788          189 ---KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI  246 (258)
Q Consensus       189 ---~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l  246 (258)
                         ..+++|+|++|+.+|++|.+||+++++++|++|++++++|++++.|.|..|++++.+.
T Consensus       245 ~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~  305 (367)
T PLN03115        245 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMA  305 (367)
T ss_pred             ccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHH
Confidence               3579999999999999999999999999885599999999999889888999987543

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=100.00  E-value=6.9e-33  Score=251.14  Aligned_cols=195  Identities=20%  Similarity=0.378  Sum_probs=165.7

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------CCCeee
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------EGNEVI  104 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~g~~~~  104 (258)
                      ...+++|++++.+++++++++|+.++.. ...|+||||+.++++..                            .+....
T Consensus       128 ~~~~~~v~~~~~~s~~i~~l~l~~~~~~-~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (405)
T TIGR01941       128 KKWECEVISNDNVATFIKELVLKLPDGE-SVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETV  206 (405)
T ss_pred             ceeeeEEEEcccccchhheEEEecCCCc-eeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccc
Confidence            3347999999999999999999987643 35899999999998721                            123467


Q ss_pred             eeccccccCCCCCEEEEEEEE---------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHH
Q 042788          105 RPYTPITLDSDIGYFELVVKM---------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPM  175 (258)
Q Consensus       105 R~ySi~s~~~~~~~l~~~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~  175 (258)
                      |+|||+|.|.+++.++|+||.         .++|.+|.||+++++||+|.++||+|.|.+.+ ..++++||||||||||+
T Consensus       207 R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~lvlIAgGtGIaP~  285 (405)
T TIGR01941       207 RAYSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPM  285 (405)
T ss_pred             eeecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC-CCCCEEEEecCcCcchH
Confidence            999999999877899999997         47799999999999999999999999987754 45789999999999999


Q ss_pred             HHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhhC
Q 042788          176 FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       176 ~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~~  250 (258)
                      ++|+++++.+.....+++++|++|+.++++|.+||+++++++|+ ++++++++++  ++.|.+..|++++.+.++.+
T Consensus       286 lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l  361 (405)
T TIGR01941       286 RSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPN-FVWHVALSDPQPEDNWTGYTGFIHNVLYENYL  361 (405)
T ss_pred             HHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCC-eEEEEEeCCCCccCCCCCccceeCHHHHHhhh
Confidence            99999877653345689999999999999999999999999998 9999998864  36688889999887655544

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=100.00  E-value=1.1e-32  Score=235.11  Aligned_cols=183  Identities=23%  Similarity=0.440  Sum_probs=156.4

Q ss_pred             EEEEEEeCCCEeEEEEECCCCC-ccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc
Q 042788           59 LTKRTPISHNTAKFRFALPKST-SILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE  137 (258)
Q Consensus        59 v~~~~~~~~~~~~l~l~~~~~~-~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~  137 (258)
                      |++++.+++++..++|+.+.+. ....|+||||+.|+++ ..+   .|+|||++.|.+++.++|+||.  .|.+|++|++
T Consensus         1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~-~~~---~~pySi~s~~~~~~~l~~~Ik~--~G~~S~~L~~   74 (253)
T cd06221           1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLP-GVG---EAPISISSDPTRRGPLELTIRR--VGRVTEALHE   74 (253)
T ss_pred             CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcC-CCC---ccceEecCCCCCCCeEEEEEEe--CChhhHHHHc
Confidence            5688999999999999987653 2378999999999987 333   3899999999867899999998  6999999999


Q ss_pred             CCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788          138 MHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN  216 (258)
Q Consensus       138 l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~  216 (258)
                      +++||++.++||+|. |..+....+++||||||+||||+++|++++.+...+.++++|+|++|+.+++++.++|++++++
T Consensus        75 l~~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~~l~~~  154 (253)
T cd06221          75 LKPGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAKR  154 (253)
T ss_pred             CCCCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHHHHHhc
Confidence            999999999999999 5544335689999999999999999999999864345789999999999999999999999987


Q ss_pred             CCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          217 SPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       217 ~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                       ++ +++.++++++.+.|.+..|++++. +.+..
T Consensus       155 -~~-~~~~~~~s~~~~~~~~~~g~v~~~-l~~~~  185 (253)
T cd06221         155 -SD-VEVILTVDRAEEGWTGNVGLVTDL-LPELT  185 (253)
T ss_pred             -CC-eEEEEEeCCCCCCccCCccccchh-HHhcC
Confidence             66 999999998887787788999884 44443

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=100.00  E-value=6e-32  Score=226.20  Aligned_cols=167  Identities=22%  Similarity=0.379  Sum_probs=146.4

Q ss_pred             EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc-
Q 042788           59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE-  137 (258)
Q Consensus        59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~-  137 (258)
                      |++++.+++++++++|+.++.   ..|+||||+.|+++ . +  ..|+|||+|.+.+.+.++|+||..++|.+|.||.+ 
T Consensus         1 V~~~~~~~~~~~~i~l~~~~~---~~~~pGQ~v~l~~~-~-~--~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~   73 (222)
T cd06194           1 VVSLQRLSPDVLRVRLEPDRP---LPYLPGQYVNLRRA-G-G--LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEE   73 (222)
T ss_pred             CceeeecCCCEEEEEEecCCC---CCcCCCCEEEEEcC-C-C--CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhc
Confidence            567889999999999998764   78999999999987 2 2  45999999999776899999999888999999976 


Q ss_pred             CCCCCEEEEecccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788          138 MHEGEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN  216 (258)
Q Consensus       138 l~~Gd~v~v~gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~  216 (258)
                      +++||.|.+.||+|.+...+ ...++++|||||+||||++++++++.... ...+++++|++|+.+++++.+||++++++
T Consensus        74 ~~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~  152 (222)
T cd06194          74 ARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG-HQGEIRLVHGARDPDDLYLHPALLWLARE  152 (222)
T ss_pred             cCCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-CCccEEEEEecCChhhccCHHHHHHHHHH
Confidence            79999999999999976653 45578999999999999999999998763 45789999999999999999999999988


Q ss_pred             CCCCeEEEEEEcCCCCCC
Q 042788          217 SPNRFKVYYVLSQPTEVW  234 (258)
Q Consensus       217 ~~~~~~v~~~~s~~~~~~  234 (258)
                      +++ ++++.+++++++.+
T Consensus       153 ~~~-~~~~~~~~~~~~~~  169 (222)
T cd06194         153 HPN-FRYIPCVSEGSQGD  169 (222)
T ss_pred             CCC-eEEEEEEccCCCCC
Confidence            888 99999998865544

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=100.00  E-value=6.4e-32  Score=231.59  Aligned_cols=175  Identities=24%  Similarity=0.422  Sum_probs=150.0

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      +++|++++.++++++.++|+.+     ..|+||||+.|+++ ..+   .|||||++.+  ++.++|+||.  .|.+|++|
T Consensus         9 ~~~v~~i~~~t~~~~~~~l~~~-----~~~~pGQfi~l~~~-~~~---~~pySi~~~~--~~~~~~~Ik~--~G~~S~~L   75 (263)
T PRK08221          9 AYKILDITKHTDIEYTFRVEVD-----GPVKPGQFFEVSLP-KVG---EAPISVSDYG--DGYIDLTIRR--VGKVTDEI   75 (263)
T ss_pred             cEEEEEEeccCCcEEEEEecCC-----CCCCCCceEEEEeC-CCC---cceeeccCCC--CCEEEEEEEe--CCchhhHH
Confidence            5999999999999999999864     36899999999988 333   3899998865  4789999998  59999999


Q ss_pred             ccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788          136 REMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA  214 (258)
Q Consensus       136 ~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~  214 (258)
                      +++++||+|.++||+|+ |.++....++++||||||||||++++++++..+..+.++++|+|++|+.+++++.+||++|+
T Consensus        76 ~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~el~~~~  155 (263)
T PRK08221         76 FNLKEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDLKRWR  155 (263)
T ss_pred             HhCCCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHHHHHh
Confidence            99999999999999998 77765556799999999999999999999987644456899999999999999999999998


Q ss_pred             hhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      ++    +.++++++++++.|.+..|++++.+.+
T Consensus       156 ~~----~~~~~~~~~~~~~~~~~~G~v~~~l~~  184 (263)
T PRK08221        156 EK----INLILTLDEGEEGYRGNVGLVTKYIPE  184 (263)
T ss_pred             hc----CcEEEEecCCCCCCccCccccChhhHh
Confidence            75    345666777777888889999975443

>PRK05713 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=235.27  Aligned_cols=166  Identities=21%  Similarity=0.381  Sum_probs=146.6

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH  134 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~  134 (258)
                      .+++|++++.++++++.++|+.+.   ...|+||||+.|+++   + ...|+|||+|.|.+.+.++|+||.+++|.+|.+
T Consensus        92 ~~~~V~~~~~~t~dv~~l~l~~~~---~~~~~~GQfv~l~~~---~-~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~  164 (312)
T PRK05713         92 LPARVVALDWLGGDVLRLRLEPER---PLRYRAGQHLVLWTA---G-GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDA  164 (312)
T ss_pred             CCeEEEEEecCCCCEEEEEEccCC---cCCcCCCCEEEEecC---C-CcccccccCcCCCCCCeEEEEEEEcCCCccchh
Confidence            479999999999999999998754   378999999999875   2 257999999998777899999999889999999


Q ss_pred             cccCCCCCEEEEecccce-eeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788          135 FREMHEGEYLPVKGPKGR-LKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS  212 (258)
Q Consensus       135 L~~l~~Gd~v~v~gP~G~-f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~  212 (258)
                      |+++++||+|.+++|.|. |.++++ ..+++|||||||||||+++|++++.+.+ ...+++|+|++|+.+|++|.+||++
T Consensus       165 l~~l~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~~el~~  243 (312)
T PRK05713        165 ARQLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG-HQGPIRLLHLARDSAGHYLAEPLAA  243 (312)
T ss_pred             hhcCCCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEEcCchHHhhhHHHHHH
Confidence            999999999999999985 655543 4578999999999999999999998874 4468999999999999999999999


Q ss_pred             HHhhCCCCeEEEEEEcC
Q 042788          213 FATNSPNRFKVYYVLSQ  229 (258)
Q Consensus       213 l~~~~~~~~~v~~~~s~  229 (258)
                      |++++|+ +++++++++
T Consensus       244 l~~~~~~-~~~~~~~~~  259 (312)
T PRK05713        244 LAGRHPQ-LSVELVTAA  259 (312)
T ss_pred             HHHHCCC-cEEEEEECc
Confidence            9999998 999887764

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.98  E-value=3.4e-31  Score=225.44  Aligned_cols=182  Identities=30%  Similarity=0.524  Sum_probs=161.7

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      .++|.+++.+++++..++|+.+...  +.++||||+.|+.| .   ...||||+++.+.+.+.++|.|+.++.|.+|.++
T Consensus         9 ~~~I~~~~~is~~~~~l~~~~~~~~--~~~~pGQfv~l~~~-~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i   82 (252)
T COG0543           9 SYKVVEKEEISPDTFLLRLRLPFVA--LTFKPGQFVMLRVP-G---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYI   82 (252)
T ss_pred             ccEEEEEEEecCceEEEEEeccccc--cccCCCcEEEEEeC-C---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHH
Confidence            5899999999999999999998764  78999999999988 2   5689999999998889899999998999999999


Q ss_pred             ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          136 REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       136 ~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      ..+++||.|.++||+|++...++..+++++||||||+||++++++++.+++ +..+++++|++|+++++++.+||++++.
T Consensus        83 ~~~k~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~~~~dl~~~~el~~~~~  161 (252)
T COG0543          83 FGLKEGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGARTAKDLLLLDELEELAE  161 (252)
T ss_pred             hhccCCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEeccChhhcccHHHHHHhhc
Confidence            999999999999999995555445566999999999999999999999987 7789999999999999999999999986


Q ss_pred             hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +     +++++++   ++|.|.+|+++.+.++++++.
T Consensus       162 ~-----~~~~~~~---~~~~G~~G~v~~~~~~~~~~~  190 (252)
T COG0543         162 K-----EVHPVTD---DGWKGRKGFVTTDVLKELLDL  190 (252)
T ss_pred             C-----cEEEEEC---CCCCccCcceeHHHHhhhccc
Confidence            4     3454554   889999999988888888765

>PRK05802 hypothetical protein; Provisional

Probab=99.97  E-value=3.9e-31  Score=232.00  Aligned_cols=178  Identities=16%  Similarity=0.257  Sum_probs=151.2

Q ss_pred             HHHhhhhhhccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeecccccc
Q 042788           33 ITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITL  112 (258)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~  112 (258)
                      -|.|.|..+.+..++...+....+++|++++.++++++.++|+.|+......++||||+.|+++ ..+....|||||++.
T Consensus        43 ~g~c~~~~~~~~~~~~~~~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~-~~~~~~~rP~SI~~~  121 (320)
T PRK05802         43 KGVCIYQEFIWNGNKAKEGRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNK-NSSSFFDVPISIMEA  121 (320)
T ss_pred             eeEEehHhhhhccchhcCccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEc-CCCCEeEEeeEeccc
Confidence            3567777776677777777777899999999999999999999876422235799999999987 445566799999999


Q ss_pred             CCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccce--eeec---CCCCceEEEEEcCccHHHHHHHHHHHHhCCC
Q 042788          113 DSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR--LKYK---VGQARAFGMIAGGTGITPMFQLTRAILENPK  187 (258)
Q Consensus       113 ~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~--f~~~---~~~~~~vvliagGtGItp~~sil~~l~~~~~  187 (258)
                      +.+++.++|+||.  .|.+|++|+++++||++.++||+|+  |.+.   ....+++++||||+||||++++++++.+++ 
T Consensus       122 ~~~~g~l~l~ik~--~G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-  198 (320)
T PRK05802        122 DTEENIIKVAIEI--RGVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-  198 (320)
T ss_pred             CCCCCEEEEEEEe--cChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-
Confidence            8777999999999  7999999999999999999999965  5442   234468999999999999999999998875 


Q ss_pred             CCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788          188 DKTNVHLIYANVTVGDILLKDELDSFATN  216 (258)
Q Consensus       188 ~~~~v~l~~~~r~~~d~~~~~eL~~l~~~  216 (258)
                        .+++++|++|+.+++++.++|+++..+
T Consensus       199 --~~v~li~g~r~~~~~~~~~el~~~~~~  225 (320)
T PRK05802        199 --NKIIVIIDKGPFKNNFIKEYLELYNIE  225 (320)
T ss_pred             --CcEEEEEeCCCHHHHHHHHHHHHhhCc
Confidence              479999999999999999999998654

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=99.97  E-value=1.3e-30  Score=223.33  Aligned_cols=175  Identities=23%  Similarity=0.404  Sum_probs=147.7

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      +++|+++..++++++.++++.+     ..|+||||+.|+++ ..+   .||||+++.+  ++.++|+||.  .|.+|.+|
T Consensus         7 ~~~v~~~~~~t~~~~~~~~~~~-----~~~~pGQ~v~l~~~-~~~---~~pySi~~~~--~~~l~~~Vk~--~G~~S~~L   73 (261)
T TIGR02911         7 KSEILEIIKHTDIEYTFRMSYD-----GPVKPGQFFEVSLP-KYG---EAPISVSGIG--EGYIDLTIRR--VGKVTDEV   73 (261)
T ss_pred             eEEEEEEeeccCCEEEEEcCCC-----CCCCCCcEEEEEec-CCC---ccceecCCCC--CCeEEEEEEe--CchhhHHH
Confidence            6899999999999988888653     46999999999988 323   4899998843  4789999998  59999999


Q ss_pred             ccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788          136 REMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA  214 (258)
Q Consensus       136 ~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~  214 (258)
                      +++++||+|.++||+|. |.+++...++++||||||||||++++++++.++....++++|+|++|+.+++++.+||++++
T Consensus        74 ~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~eL~~l~  153 (261)
T TIGR02911        74 FTLKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWK  153 (261)
T ss_pred             HcCCCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHHHHHH
Confidence            99999999999999999 77665556899999999999999999999987644446899999999999999999999998


Q ss_pred             hhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      ++    ..++++++++++.|.+..|+++..+.+
T Consensus       154 ~~----~~~~~~~~~~~~~~~~~~g~v~~~l~~  182 (261)
T TIGR02911       154 GN----INLTLTLDEAEEDYKGNIGLVTKYIPE  182 (261)
T ss_pred             hc----CcEEEEEcCCCCCCcCCeeccCHhHHh
Confidence            74    334555666677788888999986544

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=99.97  E-value=2e-30  Score=225.10  Aligned_cols=171  Identities=23%  Similarity=0.361  Sum_probs=146.0

Q ss_pred             CCCcEEEEEEEEEEeC----CCEeEEEEECCCC----CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEE
Q 042788           51 PENFKEFKLTKRTPIS----HNTAKFRFALPKS----TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELV  122 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~----~~~~~l~l~~~~~----~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~  122 (258)
                      ...+.+++|++++.++    ++++.++|+.++.    .....|.||||+.|..+   |....|+|||+|.|.+ +.++|+
T Consensus        42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~---g~~~~R~YSias~p~~-g~l~l~  117 (289)
T cd06201          42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPP---GSDVPRFYSLASSSSD-GFLEIC  117 (289)
T ss_pred             CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecC---CCCCCceEecCCCCCC-CeEEEE
Confidence            3467799999999999    6999999998862    12467999999999743   5556799999999854 899999


Q ss_pred             EEEecCCccccccccCCCCCEEEEe-cccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCC
Q 042788          123 VKMYPKGRMAHHFREMHEGEYLPVK-GPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTV  201 (258)
Q Consensus       123 Vk~~~~G~~S~~L~~l~~Gd~v~v~-gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~  201 (258)
                      ||.+++|.+|.||+++++||+|.+. +|.|.|..+ ...++++||||||||||+++|+++...    .++++|+|++|+.
T Consensus       118 Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~----~~~v~L~~g~r~~  192 (289)
T cd06201         118 VRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA----RRPMHLYWGGRDP  192 (289)
T ss_pred             EEeCCCccchhhHhhCCCcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc----cCCEEEEEEecCc
Confidence            9999899999999999999999998 578888865 345789999999999999999998632    3579999999998


Q ss_pred             c-ccccHHHHHHHHhhCCCCeEEEEEEcCCC
Q 042788          202 G-DILLKDELDSFATNSPNRFKVYYVLSQPT  231 (258)
Q Consensus       202 ~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~  231 (258)
                      + |++|.+||+++++++++ ++++++++++.
T Consensus       193 ~~d~~~~~eL~~l~~~~~~-~~~~~~~s~~~  222 (289)
T cd06201         193 ASDFLYEDELDQYLADGRL-TQLHTAFSRTP  222 (289)
T ss_pred             ccchHHHHHHHHHHHcCCC-ceEEEEECCCC
Confidence            5 89999999999998887 88888888753

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=99.97  E-value=2.5e-30  Score=223.71  Aligned_cols=177  Identities=20%  Similarity=0.356  Sum_probs=147.0

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      ++|++++.++++++.++|+.|+.  ...++||||+.|+++ ..+  ..|||||++.+.+++.++|+||.  .|.+|++|+
T Consensus         2 ~~I~~~~~~t~~~~~l~l~~~~~--~~~~~pGQfv~l~~~-~~~--~~rpySias~~~~~~~i~l~vk~--~G~~T~~L~   74 (281)
T PRK06222          2 YKILEKEELAPNVFLMEIEAPRV--AKKAKPGQFVIVRID-EKG--ERIPLTIADYDREKGTITIVFQA--VGKSTRKLA   74 (281)
T ss_pred             cEEEEEEEecCCEEEEEEeCchh--hccCCCCeEEEEEeC-CCC--CceeeEeeEEcCCCCEEEEEEEe--CCcHHHHHh
Confidence            57999999999999999998764  357999999999987 333  36899999988777899999998  699999999


Q ss_pred             cCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          137 EMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       137 ~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      ++++||+| .+.||+|++.... ..+++++||||+||||++++++++.+++   .+++++|++|+.+++++.+||++++.
T Consensus        75 ~l~~Gd~v~~i~GP~G~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r~~~d~~~~~el~~~~~  150 (281)
T PRK06222         75 ELKEGDSILDVVGPLGKPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGARNKDLLILEDEMKAVSD  150 (281)
T ss_pred             cCCCCCEEeeEEcCCCCCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecCCHHHhhcHHHHHhhCC
Confidence            99999999 7999999954433 3579999999999999999999988764   57999999999999999999998864


Q ss_pred             hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCCC
Q 042788          216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA  254 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~~  254 (258)
                      +    +.   +.+  +++|.+..|++++ .+++.+++..
T Consensus       151 ~----~~---v~~--~d~~~g~~G~v~~-~l~~~~~~~~  179 (281)
T PRK06222        151 E----LY---VTT--DDGSYGRKGFVTD-VLKELLESGK  179 (281)
T ss_pred             e----EE---EEc--CCCCcCcccchHH-HHHHHhhcCC
Confidence            3    21   222  3567788999988 5666665543

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=99.97  E-value=3.8e-30  Score=218.68  Aligned_cols=176  Identities=20%  Similarity=0.380  Sum_probs=145.0

Q ss_pred             EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccC
Q 042788           59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREM  138 (258)
Q Consensus        59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l  138 (258)
                      |++++.+++++++++|+.++.  ...|+||||+.|+++..++....|+||++|.+.+++.++|+||.  .|.+|++|.++
T Consensus         1 V~~~~~~t~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~--~G~~s~~l~~l   76 (246)
T cd06218           1 VLSNREIADDIYRLVLEAPEI--AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKV--VGKGTRLLSEL   76 (246)
T ss_pred             CcceeEecCCeEEEEEeCcch--hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEE--ECcchHHHhcC
Confidence            567899999999999998873  47899999999999832344578999999998766899999998  58899999999


Q ss_pred             CCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhC
Q 042788          139 HEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS  217 (258)
Q Consensus       139 ~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~  217 (258)
                      ++||+|.+.||+|. |..+. ..++++||||||||||++++++++....   .+++|+|++|+.++++|.+||+++..  
T Consensus        77 ~~Gd~v~i~gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~~eL~~l~~--  150 (246)
T cd06218          77 KAGDELDVLGPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG---IKVTVLLGFRSADDLFLVEEFEALGA--  150 (246)
T ss_pred             CCCCEEEEEecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC---CceEEEEEccchhhhhhHHHHHhhCC--
Confidence            99999999999997 66543 4689999999999999999999998743   68999999999999999999998853  


Q ss_pred             CCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       218 ~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                          ++.+ .+  .++|.+..|++++ .+++..++
T Consensus       151 ----~~~~-~~--~~~~~~~~g~v~~-~l~~~~~~  177 (246)
T cd06218         151 ----EVYV-AT--DDGSAGTKGFVTD-LLKELLAE  177 (246)
T ss_pred             ----cEEE-Ec--CCCCCCcceehHH-HHHHHhhc
Confidence                2222 22  2346667889988 46555544

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.6e-30  Score=221.80  Aligned_cols=181  Identities=22%  Similarity=0.288  Sum_probs=156.1

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      ..+.++|+..++.+.++.+++.....+   ..++||||..++++..++...+|||||+++... .+++|.||.  -|+.|
T Consensus       214 ~~y~~~vt~~~r~~~~t~eit~~l~~~---~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~-sel~FsIK~--LGD~T  287 (438)
T COG4097         214 FPYLGKVTAPQRGNVDTLEITIGLQGP---WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEG-SELRFSIKA--LGDFT  287 (438)
T ss_pred             cccceEEechhhcCcchheeecccCCc---ccccCCceEEEEeccccccCCCCCeeeeeCCCC-ceEEEEehh--hhhhh
Confidence            345789999999999998888887766   449999999999985455567899999998866 489999998  89999


Q ss_pred             cccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788          133 HHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD  211 (258)
Q Consensus       133 ~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~  211 (258)
                      +-|+ ++++|++++++||||.|.++... ++-|+||||+||||++|+++.+..+ .++.+|+|+|++|+.++..|.+||+
T Consensus       288 k~l~dnLk~G~k~~vdGPYG~F~~~~g~-~~QVWIAGGIGITPFis~l~~l~~~-~s~~~V~L~Y~~~n~e~~~y~~eLr  365 (438)
T COG4097         288 KTLKDNLKVGTKLEVDGPYGKFDFERGL-NTQVWIAGGIGITPFISMLFTLAER-KSDPPVHLFYCSRNWEEALYAEELR  365 (438)
T ss_pred             HHHHHhccCCceEEEecCcceeecccCC-cccEEEecCcCcchHHHHHHhhccc-ccCCceEEEEEecCCchhHHHHHHH
Confidence            9996 79999999999999999987654 4479999999999999999999985 3567999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhh
Q 042788          212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH  249 (258)
Q Consensus       212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~  249 (258)
                      ++++++|+ +.+|..       |++..|+++.+.+++.
T Consensus       366 ~~~qkl~~-~~lHii-------DSs~~g~l~~e~ler~  395 (438)
T COG4097         366 ALAQKLPN-VVLHII-------DSSKDGYLDQEDLERY  395 (438)
T ss_pred             HHHhcCCC-eEEEEe-------cCCCCCccCHHHhhcc
Confidence            99999999 888862       2234678888888876

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=99.97  E-value=7.7e-30  Score=216.40  Aligned_cols=169  Identities=19%  Similarity=0.262  Sum_probs=141.1

Q ss_pred             EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccC
Q 042788           59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREM  138 (258)
Q Consensus        59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l  138 (258)
                      |++++.+++++++++|+.|+.  ...|+||||+.|+++ ..+....|||||++.+.+.+.++|+||.  .|.+|+||.++
T Consensus         1 i~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~-~~~~~~~rpySi~s~~~~~~~l~l~i~~--~G~~t~~l~~~   75 (243)
T cd06192           1 IVKKEQLEPNLVLLTIKAPLA--ARLFRPGQFVFLRNF-ESPGLERIPLSLAGVDPEEGTISLLVEI--RGPKTKLIAEL   75 (243)
T ss_pred             CceEEEecCCEEEEEEEccch--hhcCCCCCeEEEecC-CCCCceeeeeEeeecCCCCCEEEEEEEE--cCchHHHHHhC
Confidence            467899999999999998764  368999999999987 3445578999999998777899999998  68999999999


Q ss_pred             CCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCC
Q 042788          139 HEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP  218 (258)
Q Consensus       139 ~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~  218 (258)
                      ++||++.++||+|++...+...++++||||||||||++++++++.+++   .+++++|++|+.+|+++.+||+++.    
T Consensus        76 ~~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~~~----  148 (243)
T cd06192          76 KPGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAKKAKEEFLDEYFELPA----  148 (243)
T ss_pred             CCCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecCcHHHHHHHHHHHhhc----
Confidence            999999999999996554444589999999999999999999998763   6899999999999999999998872    


Q ss_pred             CCeEEEEEEcCCCCCCCCccccccHH
Q 042788          219 NRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       219 ~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                        ..+. +++  +++|.+..|+++..
T Consensus       149 --~~~~-~~~--~~~~~~~~g~v~~~  169 (243)
T cd06192         149 --DVEI-WTT--DDGELGLEGKVTDS  169 (243)
T ss_pred             --CeEE-EEe--cCCCCccceeechh
Confidence              1222 233  24566677888764

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.97  E-value=8.8e-30  Score=218.68  Aligned_cols=169  Identities=17%  Similarity=0.193  Sum_probs=142.6

Q ss_pred             CCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEEecC---------Cccccccc
Q 042788           67 HNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKMYPK---------GRMAHHFR  136 (258)
Q Consensus        67 ~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~~~~---------G~~S~~L~  136 (258)
                      +++++++|+.++.. ...|.||||+.|.++   +....|+|||+|.|.+ .+.++|+||..+.         |.+|.+|+
T Consensus        15 ~~v~~l~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~   90 (267)
T cd06182          15 RSTRHLEFDLSGNS-VLKYQPGDHLGVIPP---NPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLA   90 (267)
T ss_pred             CceEEEEEecCCCC-cCccCCCCEEEEecC---CCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHh
Confidence            46999999988521 478999999999876   3456799999999854 5899999999755         99999999


Q ss_pred             cCCCCCEEEEecccc-eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHH
Q 042788          137 EMHEGEYLPVKGPKG-RLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELD  211 (258)
Q Consensus       137 ~l~~Gd~v~v~gP~G-~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~  211 (258)
                      ++++||.|.+.||+| .|.++.+..+++|||||||||||+++++++++..   .....+++++|++|+. ++++|.++|+
T Consensus        91 ~lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~  170 (267)
T cd06182          91 GLQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQ  170 (267)
T ss_pred             hCCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHH
Confidence            999999999999999 7988766568999999999999999999999872   2234689999999999 9999999999


Q ss_pred             HHHhhCCCCeEEEEEEcCCCCCCCCccccccH
Q 042788          212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSK  243 (258)
Q Consensus       212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~  243 (258)
                      ++++++++ +++++++|+++..   ..|++++
T Consensus       171 ~~~~~~~~-~~~~~~~S~~~~~---~~~~v~~  198 (267)
T cd06182         171 EALKDGAL-TRLDVAFSREQAE---PKVYVQD  198 (267)
T ss_pred             HHHhCCCc-ceEEEEEccCCCC---CceehHH
Confidence            99987777 9999999976543   2466654

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=99.97  E-value=1.7e-29  Score=228.72  Aligned_cols=186  Identities=16%  Similarity=0.202  Sum_probs=149.0

Q ss_pred             CCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEec--CCCC-eeeeeccccccCCCC----CE
Q 042788           51 PENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKD--SEGN-EVIRPYTPITLDSDI----GY  118 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~g~-~~~R~ySi~s~~~~~----~~  118 (258)
                      +.....++|++++.+++     +++.++|+.++.  .+.|.||||+.|.+|.  .+|. ...|+|||+|.++++    +.
T Consensus       139 ~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~--~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~  216 (411)
T TIGR03224       139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSH--PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNN  216 (411)
T ss_pred             CCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCC--cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCE
Confidence            34456799999999954     999999998764  4789999999998762  1233 357999999986321    47


Q ss_pred             EEEEEEEec--------CCccccccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhC--CC
Q 042788          119 FELVVKMYP--------KGRMAHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILEN--PK  187 (258)
Q Consensus       119 l~~~Vk~~~--------~G~~S~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~--~~  187 (258)
                      ++|+||+++        +|.+|+||+++++||+|.++||+|+ |.++....+++||||||||||||++|++++...  ..
T Consensus       217 l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~  296 (411)
T TIGR03224       217 LALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG  296 (411)
T ss_pred             EEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC
Confidence            999999975        5899999999999999999999998 555433357899999999999999999998753  12


Q ss_pred             CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          188 DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       188 ~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      ...+++|+|++|+.++++|.+||+++.+.+   +++++++++++++   ..|++++.
T Consensus       297 ~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~---~~~~~~~sr~~~~---~~g~V~d~  347 (411)
T TIGR03224       297 EGGKLMLFFGARTKEELPYFGPLQKLPKDF---IDINFAFSRTPEQ---PKRYVQDA  347 (411)
T ss_pred             CCCCEEEEEecCccccchHHHHHHHHHhcC---ceEEEEeccCCcc---CcccHhhH
Confidence            346899999999999999999999998766   4456677875443   36788774

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=99.97  E-value=1.5e-29  Score=210.85  Aligned_cols=156  Identities=25%  Similarity=0.355  Sum_probs=135.7

Q ss_pred             eCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc-cCCCCCE
Q 042788           65 ISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-EMHEGEY  143 (258)
Q Consensus        65 ~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~-~l~~Gd~  143 (258)
                      ++.+++.++|+.++..  ..|+||||+.|+++ ..+....|+|||++.|.+++.++|+||.  .|.+|++|. ++++||+
T Consensus         5 ~~~~~~~i~l~~~~~~--~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~~~~l~l~vk~--~G~~t~~l~~~l~~G~~   79 (216)
T cd06198           5 EVRPTTTLTLEPRGPA--LGHRAGQFAFLRFD-ASGWEEPHPFTISSAPDPDGRLRFTIKA--LGDYTRRLAERLKPGTR   79 (216)
T ss_pred             EecceEEEEEeeCCCC--CCcCCCCEEEEEeC-CCCCCCCCCcEEecCCCCCCeEEEEEEe--CChHHHHHHHhCCCCCE
Confidence            4457889999876642  78999999999988 4455678999999998877899999998  688999997 9999999


Q ss_pred             EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEE
Q 042788          144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKV  223 (258)
Q Consensus       144 v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v  223 (258)
                      |.++||+|.|.++.. .++++|||||+||||++++++++..+. ...+++++|++|+.++++|.++|+++.+++ + +++
T Consensus        80 v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~-~~~  155 (216)
T cd06198          80 VTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCVRDPEDAVFLDELRALAAAA-G-VVL  155 (216)
T ss_pred             EEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-CCceEEEEEEECCHHHhhhHHHHHHHHHhc-C-eEE
Confidence            999999999887655 689999999999999999999998764 356899999999999999999999998887 5 888


Q ss_pred             EEEEcC
Q 042788          224 YYVLSQ  229 (258)
Q Consensus       224 ~~~~s~  229 (258)
                      +++.++
T Consensus       156 ~~~~~~  161 (216)
T cd06198         156 HVIDSP  161 (216)
T ss_pred             EEEeCC
Confidence            876554

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.97  E-value=1.7e-29  Score=214.86  Aligned_cols=173  Identities=21%  Similarity=0.378  Sum_probs=143.3

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      ++|+++++++++++.++|+.++.  ...|+||||+.|+++ ..+  ..|||||++.+.+.+.++|+||.  .|..|.+|.
T Consensus         1 ~~v~~~~~~t~d~~~~~l~~~~~--~~~~~pGQf~~l~~~-~~~--~~~pySi~s~~~~~~~~~~~vk~--~G~~t~~l~   73 (248)
T cd06219           1 YKILEKEELAPNVKLFEIEAPLI--AKKAKPGQFVIVRAD-EKG--ERIPLTIADWDPEKGTITIVVQV--VGKSTRELA   73 (248)
T ss_pred             CEEEEEEEeCCCeEEEEEEChhh--hccCCCCcEEEEEcC-CCC--CccceEeEEEcCCCCEEEEEEEe--CCchHHHHH
Confidence            47899999999999999998764  357999999999976 333  35899999998777899999998  688999999


Q ss_pred             cCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          137 EMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       137 ~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      ++++||++ .++||+|.+.... ..++++|||||+||||++++++++.+.+   .+++++|++|+.++++|.+||+++++
T Consensus        74 ~l~~G~~v~~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~  149 (248)
T cd06219          74 TLEEGDKIHDVVGPLGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGARTKDLVILEDEFRAVSD  149 (248)
T ss_pred             hcCCCCEeeeeecCCCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHHhhcC
Confidence            99999999 6999999965543 3579999999999999999999988764   58999999999999999999999964


Q ss_pred             hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                      +    .  .+ .+  ++.|.+..|++++. +++.+
T Consensus       150 ~----~--~~-~~--~~~~~~~~g~v~~~-l~~~~  174 (248)
T cd06219         150 E----L--II-TT--DDGSYGEKGFVTDP-LKELI  174 (248)
T ss_pred             e----E--EE-Ee--CCCCCCccccchHH-HHHHH
Confidence            3    2  22 22  23466678888874 55555

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=99.97  E-value=4.9e-29  Score=212.36  Aligned_cols=171  Identities=16%  Similarity=0.334  Sum_probs=144.0

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      +++.++|++++.++++++.++|+.+.   ...|+||||+.|+++ ..+....|+||+++.+  ++.++|.||.  .|.+|
T Consensus         3 ~~~~~~V~~~~~~t~d~~~l~l~~~~---~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~--~~~l~l~Vk~--~G~~t   74 (250)
T PRK00054          3 KPENMKIVENKEIAPNIYTLVLDGEK---VFDMKPGQFVMVWVP-GVEPLLERPISISDID--KNEITILYRK--VGEGT   74 (250)
T ss_pred             CceEEEEEEEEEecCCeEEEEEeCcc---ccCCCCCcEEEEEeC-CCCCcCceeeEEeeeC--CCEEEEEEEE--cChHH
Confidence            56789999999999999999999653   478999999999988 4455568999999988  4799999998  69999


Q ss_pred             cccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788          133 HHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD  211 (258)
Q Consensus       133 ~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~  211 (258)
                      ++|+++++||+|.+.||+|. |.++. ..+++++|||||||||++++++++...+   .+++++|++|+.+|++|.+||+
T Consensus        75 ~~l~~l~~G~~v~i~gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~  150 (250)
T PRK00054         75 KKLSKLKEGDELDIRGPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGARTKDEVIFEEEFA  150 (250)
T ss_pred             HHHhcCCCCCEEEEEcccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcCCHHHhhhHHHHH
Confidence            99999999999999999998 76653 5589999999999999999999998754   5799999999999999999999


Q ss_pred             HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHH
Q 042788          212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEM  245 (258)
Q Consensus       212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~  245 (258)
                      ++++     +.+   .+  +++|.+..|++++.+
T Consensus       151 ~~~~-----~~~---~~--~~~~~~~~g~v~~~l  174 (250)
T PRK00054        151 KVGD-----VYV---TT--DDGSYGFKGFVTDVL  174 (250)
T ss_pred             hcCC-----EEE---Ee--cCCCCCcccchhHhH
Confidence            8431     221   12  345666778888753

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.96  E-value=4.3e-29  Score=208.75  Aligned_cols=153  Identities=25%  Similarity=0.371  Sum_probs=128.4

Q ss_pred             EEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCC---------------CCeeeeeccccccCCCC---CEEEEE
Q 042788           61 KRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSE---------------GNEVIRPYTPITLDSDI---GYFELV  122 (258)
Q Consensus        61 ~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~---------------g~~~~R~ySi~s~~~~~---~~l~~~  122 (258)
                      +++.+++++++++|+.++......|+||||+.|+++...               ++...|+|||+|.|.++   +.++|.
T Consensus         2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~   81 (220)
T cd06197           2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT   81 (220)
T ss_pred             cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence            467899999999999987644589999999999987311               22457999999998653   789999


Q ss_pred             EEEecCCccccccccCC--C---CCEEEEecccceeeecC---CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEE
Q 042788          123 VKMYPKGRMAHHFREMH--E---GEYLPVKGPKGRLKYKV---GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHL  194 (258)
Q Consensus       123 Vk~~~~G~~S~~L~~l~--~---Gd~v~v~gP~G~f~~~~---~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l  194 (258)
                      ||.  .|.+|++|.+..  .   |+++.+.||+|.|.++.   +..++++||||||||||++++++++........+++|
T Consensus        82 vk~--~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v~l  159 (220)
T cd06197          82 VRK--KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITL  159 (220)
T ss_pred             EEe--CCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccCCCcEEE
Confidence            999  599999997543  3   99999999999998764   3457899999999999999999999876434578999


Q ss_pred             EEEeCCCcccccHHHHHHHHh
Q 042788          195 IYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       195 ~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      +|++|+.+++++.+||+++.+
T Consensus       160 ~~~~r~~~~~~~~~el~~~~~  180 (220)
T cd06197         160 LWSLREDDLPLVMDTLVRFPG  180 (220)
T ss_pred             EEEecchhhHHHHHHHHhccC
Confidence            999999999999999988754

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=99.96  E-value=3.3e-28  Score=206.64  Aligned_cols=163  Identities=16%  Similarity=0.218  Sum_probs=134.7

Q ss_pred             CEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecC-----Cccccccc-cCCCC
Q 042788           68 NTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK-----GRMAHHFR-EMHEG  141 (258)
Q Consensus        68 ~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~-----G~~S~~L~-~l~~G  141 (258)
                      ++++++|+.++.  ...|+||||+.|.++   +....|+|||+|.|.+ +.++|+||..++     |.+|.+|+ .+++|
T Consensus        17 ~v~~l~l~~~~~--~~~f~pGQ~v~l~~~---~~~~~R~YSIas~p~~-~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~~G   90 (245)
T cd06200          17 PLWRLRLTPPDA--GAQWQAGDIAEIGPR---HPLPHREYSIASLPAD-GALELLVRQVRHADGGLGLGSGWLTRHAPIG   90 (245)
T ss_pred             ceEEEEEecCCC--CCCccCCcEEEecCC---CCCCCcceEeccCCCC-CEEEEEEEEeccCCCCCeeechhhhhCCCCC
Confidence            599999998753  478999999999865   2346799999999864 789999999866     77999996 56999


Q ss_pred             CEEEEecccc-eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCC
Q 042788          142 EYLPVKGPKG-RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVG-DILLKDELDSFATNSPN  219 (258)
Q Consensus       142 d~v~v~gP~G-~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~  219 (258)
                      |+|.+.||.| .|.++. ..+++|||||||||||+++|++++..++  ..+++++|++|+.+ +++|.+||+++++++++
T Consensus        91 d~v~i~gp~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~  167 (245)
T cd06200          91 ASVALRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGERQAAHDFFCREELEAWQAAGHL  167 (245)
T ss_pred             CEEEEEecCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecCCccccHhHHHHHHHHHHCCCc
Confidence            9999999866 577654 4578999999999999999999998763  25789999999984 99999999999998888


Q ss_pred             CeEEEEEEcCCCCCCCCccccccHH
Q 042788          220 RFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       220 ~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                       +++++++++++.    ..|++++.
T Consensus       168 -~~~~~~~s~~~~----~~~~v~~~  187 (245)
T cd06200         168 -ARLDLAFSRDQA----QKRYVQDR  187 (245)
T ss_pred             -ceEEEEEccCCC----CCcchHHH
Confidence             899888887543    24566553

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.96  E-value=3.4e-29  Score=208.02  Aligned_cols=203  Identities=19%  Similarity=0.388  Sum_probs=177.4

Q ss_pred             CCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEec----------------------------
Q 042788           46 RGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKD----------------------------   97 (258)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~----------------------------   97 (258)
                      +.++...+| +++|++..+.+.-+.++.++.|+.. ...|+||-|+.+.+|.                            
T Consensus       127 Ee~fgvkkW-ectViSNdN~ATFIKEL~laip~g~-~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs  204 (410)
T COG2871         127 EEVFGVKKW-ECTVISNDNKATFIKELKLAIPEGE-EVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVS  204 (410)
T ss_pred             HHhcCccce-eEEEEeCCchhhhhhhheeeCCCCC-ccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeec
Confidence            445666677 7999999999999999999999886 5789999999999871                            


Q ss_pred             CCCCeeeeeccccccCCCCCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEc
Q 042788           98 SEGNEVIRPYTPITLDSDIGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAG  168 (258)
Q Consensus        98 ~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliag  168 (258)
                      ...+...|.||.+|.|++.+.+.|-||..         |.|.+|.|+.+|++||+|.++||+|.|..+++ ..++|||+|
T Consensus       205 ~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKdt-daemvFigG  283 (410)
T COG2871         205 KVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDT-DAEMVFIGG  283 (410)
T ss_pred             cccHHHHHHhhhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhccC-CCceEEEec
Confidence            01123469999999999999999999975         56889999999999999999999999776654 488999999


Q ss_pred             CccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHH
Q 042788          169 GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMI  246 (258)
Q Consensus       169 GtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l  246 (258)
                      |.|.+|++|.+-.++.+-...+++.+.|++|+..+.+|.++++++++++|| |+.|+++|++  +++|.+.+|++...+.
T Consensus       284 GAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pN-F~wH~aLSdplpEDnW~g~TgFihnv~~  362 (410)
T COG2871         284 GAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPN-FHWHLALSDPLPEDNWDGYTGFIHNVLY  362 (410)
T ss_pred             CcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCC-cEEEEEecCCCCcCCcccchhHHHHHHH
Confidence            999999999998888776677899999999999999999999999999999 9999999976  5889999999999888


Q ss_pred             hhhCCC
Q 042788          247 QMHCPT  252 (258)
Q Consensus       247 ~~~~~~  252 (258)
                      +..+.+
T Consensus       363 en~Lk~  368 (410)
T COG2871         363 ENYLKD  368 (410)
T ss_pred             hhhhhc
Confidence            777654

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=99.96  E-value=2e-28  Score=203.24  Aligned_cols=153  Identities=22%  Similarity=0.358  Sum_probs=131.6

Q ss_pred             EEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc-cccccc-cC
Q 042788           61 KRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR-MAHHFR-EM  138 (258)
Q Consensus        61 ~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~-~S~~L~-~l  138 (258)
                      +++.+++++++++|+.+.......|+||||+.|+++ .   ...|+|||++.+.+.+.++|+||.+++|. +|.||. .+
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~-~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~   77 (211)
T cd06185           2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLP-N---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL   77 (211)
T ss_pred             ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcC-C---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC
Confidence            578999999999999987643348999999999987 2   35799999999877789999999987665 799985 68


Q ss_pred             CCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCC
Q 042788          139 HEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP  218 (258)
Q Consensus       139 ~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~  218 (258)
                      ++||+|.++||+|.|.+.+. .++++||||||||||++++++++.+..   .+++++|++|+.+++++.++|++++  .+
T Consensus        78 ~~Gd~v~i~gP~g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~--~~  151 (211)
T cd06185          78 RVGDELEVSAPRNLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGRSREDAAFLDELAALP--GD  151 (211)
T ss_pred             CCCCEEEEcCCccCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeCCCcchhHHHHHhhhc--CC
Confidence            99999999999999887653 578999999999999999999998753   5799999999999999999999987  33


Q ss_pred             CCeEEE
Q 042788          219 NRFKVY  224 (258)
Q Consensus       219 ~~~~v~  224 (258)
                      + +++.
T Consensus       152 ~-~~~~  156 (211)
T cd06185         152 R-VHLH  156 (211)
T ss_pred             c-EEEE
Confidence            3 6655

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.96  E-value=1.4e-27  Score=201.34  Aligned_cols=162  Identities=20%  Similarity=0.315  Sum_probs=134.6

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      .+|++++++++++++++|+.+     ..|+||||+.|+++ ..+   .|+||+++.|   +.++|+||.  .|.+|+||+
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~-----~~~~pGQ~v~l~~~-~~~---~~~~Si~s~~---~~l~~~v~~--~G~~s~~L~   66 (233)
T cd06220           1 VTIKEVIDETPTVKTFVFDWD-----FDFKPGQFVMVWVP-GVD---EIPMSLSYID---GPNSITVKK--VGEATSALH   66 (233)
T ss_pred             CEEEEEEEEcCCEEEEEEecC-----CCCCCCceEEEEeC-CCC---cceeEEecCC---CeEEEEEEe--cChHHHHHH
Confidence            378999999999999999864     47999999999987 222   4899999987   689999998  599999999


Q ss_pred             cCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          137 EMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       137 ~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      ++++||++.+.||+|. |.++   .++++||||||||||++++++++..+    ++++++|++|+.+|+++.+||++.  
T Consensus        67 ~l~~Gd~v~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r~~~d~~~~~eL~~~--  137 (233)
T cd06220          67 DLKEGDKLGIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGARTKEELLFLDRLRKS--  137 (233)
T ss_pred             hcCCCCEEEEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecCChHHChhHHHHhhC--
Confidence            8999999999999998 7654   57999999999999999999999875    589999999999999999999972  


Q ss_pred             hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                        .. +.+  +.+   ++|.+..|++++. +++..
T Consensus       138 --~~-~~~--~~~---~~~~~~~g~~~~~-l~~~~  163 (233)
T cd06220         138 --DE-LIV--TTD---DGSYGFKGFVTDL-LKELD  163 (233)
T ss_pred             --Cc-EEE--EEe---CCCCcccceehHH-Hhhhc
Confidence              12 332  222   3466678999874 54443

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PLN02292 ferric-chelate reductase

Probab=99.95  E-value=1.4e-26  Score=219.05  Aligned_cols=190  Identities=16%  Similarity=0.275  Sum_probs=151.4

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCCcccc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G~~S~  133 (258)
                      ..+++++++.+++++.+++++.++.   ..++||||+++++| ..+..++|||||+|.|. +++.+++.||.  .|.+|+
T Consensus       325 ~~~~Iv~~~~l~~dvv~L~~~~~~~---~~~~PGQ~vfL~~P-~~s~~q~HPFTIaSsp~~~~~~l~l~IK~--~G~~T~  398 (702)
T PLN02292        325 NNVKLVSARVLPCDTVELNFSKNPM---LMYSPTSIMFVNIP-SISKLQWHPFTITSSSKLEPEKLSVMIKS--QGKWST  398 (702)
T ss_pred             cceEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCeEEEEEc-cCCccceeeeEeeccCCCCCCEEEEEEEc--CCchhH
Confidence            4688999999999999999987753   68999999999998 55567899999999874 56789999997  799998


Q ss_pred             ccc-cCCCCCE-----EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCC----CCeEEEEEEeCCCcc
Q 042788          134 HFR-EMHEGEY-----LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKD----KTNVHLIYANVTVGD  203 (258)
Q Consensus       134 ~L~-~l~~Gd~-----v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~----~~~v~l~~~~r~~~d  203 (258)
                      +|. .+++||.     |.++||||.+..+...++++++||||+||||++++++++.++..+    .++++++|++|+.+|
T Consensus       399 ~L~~~l~~gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~D  478 (702)
T PLN02292        399 KLYHMLSSSDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSD  478 (702)
T ss_pred             HHHHhCCCCCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHH
Confidence            884 6788884     679999998654444568999999999999999999999876321    268999999999999


Q ss_pred             cccHHHHHH-------HHhhCCCCeEEEEEEcCCCCCC-CCccccccHHHHhhhCCCCC
Q 042788          204 ILLKDELDS-------FATNSPNRFKVYYVLSQPTEVW-NGGIGHVSKEMIQMHCPTPA  254 (258)
Q Consensus       204 ~~~~~eL~~-------l~~~~~~~~~v~~~~s~~~~~~-~~~~G~i~~~~l~~~~~~~~  254 (258)
                      +.+.|++..       ++++. + +++..+++++++.. .+..|  +++++++..+.|.
T Consensus       479 l~~ld~l~~e~~~~~~l~~~~-~-~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~  533 (702)
T PLN02292        479 LSMLDLILPTSGLETELSSFI-D-IQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPN  533 (702)
T ss_pred             hhHHHHHHHhhhhHHHHhhcC-C-ceEEEEEeCCCCCCCccccc--chhhhhhhcCCCC
Confidence            998876543       22333 3 77887787765432 33445  8888988877666

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.95  E-value=5.4e-27  Score=198.05  Aligned_cols=158  Identities=13%  Similarity=0.173  Sum_probs=130.9

Q ss_pred             EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC-------------------CeeeeeccccccCCCCCEE
Q 042788           59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG-------------------NEVIRPYTPITLDSDIGYF  119 (258)
Q Consensus        59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g-------------------~~~~R~ySi~s~~~~~~~l  119 (258)
                      |++++.+++++++++|+.++......|.||||+.|.++ .++                   ....|+||+++.+.+.+.+
T Consensus         1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l   79 (235)
T cd06193           1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFP-DPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGEL   79 (235)
T ss_pred             CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEec-CCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEE
Confidence            57899999999999999887532367899999999987 332                   4678999999998777999


Q ss_pred             EEEEEEecC-CccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEe
Q 042788          120 ELVVKMYPK-GRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYAN  198 (258)
Q Consensus       120 ~~~Vk~~~~-G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~  198 (258)
                      +|.|+.+++ |.+|+|++++++||+|.+.||+|.|...+ ..+++|||||||||||+++|++++...    .+++++|++
T Consensus        80 ~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~----~~~~~~~~~  154 (235)
T cd06193          80 DIDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD----ARGTALIEV  154 (235)
T ss_pred             EEEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC----CeEEEEEEE
Confidence            999998877 99999999999999999999999987654 457899999999999999999988653    589999999


Q ss_pred             CCCcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788          199 VTVGDILLKDELDSFATNSPNRFKVYYVLSQP  230 (258)
Q Consensus       199 r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~  230 (258)
                      ++.+|+...++       .++ ++++++.+++
T Consensus       155 ~~~~d~~~l~~-------~~~-~~~~~~~~~~  178 (235)
T cd06193         155 PDAADEQPLPA-------PAG-VEVTWLHRGG  178 (235)
T ss_pred             CCHHHccccCC-------CCC-cEEEEEeCCC
Confidence            99866543322       224 7777776644

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.94  E-value=1.8e-26  Score=223.97  Aligned_cols=175  Identities=21%  Similarity=0.302  Sum_probs=147.4

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      ++|++++.++++++.++|+.|..  ...++||||+.|+++ ..+  ..|||||++.+.+.+.++|+||.  .|.+|.+|+
T Consensus         2 ~~I~~~~~~t~~v~~l~l~~p~~--~~~~~pGQFv~l~~~-~~~--~~rp~Si~~~~~~~g~i~~~vk~--vG~~T~~L~   74 (752)
T PRK12778          2 NKIVEKEIFSEKVFLLEIEAPLI--AKSRKPGQFVIVRVG-EKG--ERIPLTIADADPEKGTITLVIQE--VGLSTTKLC   74 (752)
T ss_pred             CEEEEEEEEcCCEEEEEEeCCch--hccCCCCeeEEEEeC-CCC--CeeEEEeeeeCCCCCEEEEEEEE--cCchHHHHh
Confidence            47999999999999999998754  357999999999987 444  36899999999877999999998  699999999


Q ss_pred             cCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788          137 EMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT  215 (258)
Q Consensus       137 ~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~  215 (258)
                      ++++||.+ .+.||+|++.... ..++++|||||+||||++++++++.+++   .+++++|++|+.+++++.+||++++.
T Consensus        75 ~l~~Gd~v~~v~GP~G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r~~~~l~~~~el~~~~~  150 (752)
T PRK12778         75 ELNEGDYITDVVGPLGNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGRSKELIILEDEMRESSD  150 (752)
T ss_pred             cCCCCCEeCeEeCCCCCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccCCHHHhhhHHHHHhhcC
Confidence            99999999 7999999965443 3479999999999999999999998875   58999999999999999999998864


Q ss_pred             hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +    +.+   .+  +++|.|..|++++ .+++.+++
T Consensus       151 ~----~~~---~t--~dg~~g~~G~v~~-~l~~~~~~  177 (752)
T PRK12778        151 E----VII---MT--DDGSYGRKGLVTD-GLEEVIKR  177 (752)
T ss_pred             e----EEE---EE--CCCCCCCcccHHH-HHHHHhhc
Confidence            3    322   22  4668888999988 46666543

>PLN02631 ferric-chelate reductase

Probab=99.94  E-value=1.7e-25  Score=211.28  Aligned_cols=171  Identities=14%  Similarity=0.279  Sum_probs=139.1

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCCccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKGRMAHH  134 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G~~S~~  134 (258)
                      ..++++.+.+++++.++++..+..   ..+.||||+.+++| ..+..++||||++|.|+ +++.++|.||.  .|.+|++
T Consensus       309 ~~~lv~~~~l~~d~l~l~~~~~~~---~~~~PGQfvfL~~p-~~s~~q~HPFSIaSsp~~~~~~L~~~IK~--~Gg~T~~  382 (699)
T PLN02631        309 RSRLVSARILPSDNLELTFSKTPG---LHYTPTSILFLHVP-SISKLQWHPFTITSSSNLEKDTLSVVIRR--QGSWTQK  382 (699)
T ss_pred             eEEEEEEEEeCCCeEEEEEEcCCC---CcCCCCceEEEEec-cCCccceEEEEEeccCCCCCCEEEEEEEc--CChHHHH
Confidence            467888888999999999986543   68999999999999 55667899999999874 45789999998  7999999


Q ss_pred             cc-cCCC-CC--EEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCC----CCeEEEEEEeCCCccccc
Q 042788          135 FR-EMHE-GE--YLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKD----KTNVHLIYANVTVGDILL  206 (258)
Q Consensus       135 L~-~l~~-Gd--~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~----~~~v~l~~~~r~~~d~~~  206 (258)
                      |. .++. |+  ++.++||||.+..+...++++||||||+||||++++++++..+..+    .++++|+|++|+.+|+.+
T Consensus       383 L~~~l~~~g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f  462 (699)
T PLN02631        383 LYTHLSSSIDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAF  462 (699)
T ss_pred             HHHhhhcCCCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhh
Confidence            84 4654 45  6888899998655545678999999999999999999999865321    247999999999999999


Q ss_pred             HHHHHHHH-----hhCCCCeEEEEEEcCCCCC
Q 042788          207 KDELDSFA-----TNSPNRFKVYYVLSQPTEV  233 (258)
Q Consensus       207 ~~eL~~l~-----~~~~~~~~v~~~~s~~~~~  233 (258)
                      .|||+.+.     -+..+ +++..++||+++.
T Consensus       463 ~deL~~l~~~~~~l~~~n-i~i~iyVTR~~~~  493 (699)
T PLN02631        463 LDLIFPLDISVSDISRLN-LRIEAYITREDKK  493 (699)
T ss_pred             HHHHhhhccchhhhhcCc-eEEEEEEcCCCCC
Confidence            99998631     11235 9999999997543

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.94  E-value=4.6e-26  Score=188.93  Aligned_cols=147  Identities=21%  Similarity=0.293  Sum_probs=122.7

Q ss_pred             EEEEeC-CCEeEEEEECCCCCccCCCCCCcEEEEEEecCC-CCeeeeeccccccCCC-CCEEEEEEEEecCCcccccccc
Q 042788           61 KRTPIS-HNTAKFRFALPKSTSILGLPVGQHILCRGKDSE-GNEVIRPYTPITLDSD-IGYFELVVKMYPKGRMAHHFRE  137 (258)
Q Consensus        61 ~~~~~~-~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~-g~~~~R~ySi~s~~~~-~~~l~~~Vk~~~~G~~S~~L~~  137 (258)
                      .++.+. +++++++|+.+..   ..|.||||+.|+++ .. +...+|||||++.+.+ .+.++|+||.. +|..++.+..
T Consensus         3 ~~~~~~~~~~~~l~~~~~~~---~~~~pGq~v~l~~~-~~~~~~~~hpfsias~~~~~~~~i~~~vk~~-~G~~t~~~~~   77 (210)
T cd06186           3 TVELLPDSDVIRLTIPKPKP---FKWKPGQHVYLNFP-SLLSFWQSHPFTIASSPEDEQDTLSLIIRAK-KGFTTRLLRK   77 (210)
T ss_pred             EEEEecCCCEEEEEEecCCC---CccCCCCEEEEEeC-CCCCCcccCCcEeeeCCCCCCCEEEEEEEec-CChHHHHHHH
Confidence            344555 8999999998753   78999999999998 44 5567899999999876 58999999985 3777777777


Q ss_pred             CC------CCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCC---CCCeEEEEEEeCCCccc-ccH
Q 042788          138 MH------EGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPK---DKTNVHLIYANVTVGDI-LLK  207 (258)
Q Consensus       138 l~------~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~---~~~~v~l~~~~r~~~d~-~~~  207 (258)
                      ++      .|+++.++||+|.+......+++++|||||+||||++++++++..+..   ...+++++|++|+.+++ .|.
T Consensus        78 ~~~~~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~  157 (210)
T cd06186          78 ALKSPGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFL  157 (210)
T ss_pred             HHhCcCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHH
Confidence            76      899999999999976334457899999999999999999999987632   35789999999999995 789


Q ss_pred             HHHHH
Q 042788          208 DELDS  212 (258)
Q Consensus       208 ~eL~~  212 (258)
                      ++|++
T Consensus       158 ~~l~~  162 (210)
T cd06186         158 DELRA  162 (210)
T ss_pred             HHHHh
Confidence            99975

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.94  E-value=3e-25  Score=218.13  Aligned_cols=184  Identities=19%  Similarity=0.288  Sum_probs=150.5

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      .+..++|++++.++++++.++|+.|..  ...++||||+.|+++ .++.  .|||||++.+.+++.++|+||.  .|.+|
T Consensus       647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~--~~~~~PGQFv~L~~~-~~ge--~rP~SIas~~~~~g~i~l~Vk~--vG~~T  719 (944)
T PRK12779        647 GQIPQTIVGKVQLAGGIVEFTVRAPMV--ARSAQAGQFVRVLPW-EKGE--LIPLTLADWDAEKGTIDLVVQG--MGTSS  719 (944)
T ss_pred             cceEEEEEEEEEecCCEEEEEEeCCCc--cccCCCCceEEEEeC-CCCC--EEeEEccCCCCCCCEEEEEEEe--eccHH
Confidence            467899999999999999999998764  357999999999976 4443  5899999988777899999998  58888


Q ss_pred             cccccCCCCCEEE-Eecccceee-ecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788          133 HHFREMHEGEYLP-VKGPKGRLK-YKV-GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE  209 (258)
Q Consensus       133 ~~L~~l~~Gd~v~-v~gP~G~f~-~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e  209 (258)
                      .+|+++++||.+. +.||+|.+. ++. ...++++|||||+||||++++++++.+.+   .+++++|++|+.+++++.++
T Consensus       720 ~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~Rs~edl~~~de  796 (944)
T PRK12779        720 LEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFRAKEFLFWTGD  796 (944)
T ss_pred             HHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeCCHHHhhhHHH
Confidence            8899999999995 999999953 332 22368999999999999999999998765   57999999999999998766


Q ss_pred             ---HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788          210 ---LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       210 ---L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~  250 (258)
                         |++|+++++++++++++.   +++|.|.+|++++. +++.+
T Consensus       797 l~~L~~la~~~~~~~~v~~tt---ddgs~G~~G~Vt~~-l~~ll  836 (944)
T PRK12779        797 DERVGKLKAEFGDQLDVIYTT---NDGSFGVKGFVTGP-LEEML  836 (944)
T ss_pred             HHHHHHHHHHcCCCeEEEEEe---cCCCCCCccccChH-HHHHH
Confidence               566777788656666542   35677888999974 44443

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.92  E-value=1.6e-24  Score=214.49  Aligned_cols=175  Identities=18%  Similarity=0.316  Sum_probs=145.2

Q ss_pred             EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc-
Q 042788           57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF-  135 (258)
Q Consensus        57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L-  135 (258)
                      ++|++++.++++++.++|+.|+.  ...++||||+.|+++ ..+  ..|||||++.+.+.+.++|.|+.  .|.+|++| 
T Consensus         2 ~~I~~~~~l~~~~~~l~l~ap~~--a~~~~PGQFV~l~~~-~~~--errplSIa~~~~~~g~i~l~vk~--vG~~T~~L~   74 (1006)
T PRK12775          2 YSIVRREAFSDTTFLWEVEAPDV--AASAEPGHFVMLRLY-EGA--ERIPLTVADFDRKKGTITMVVQA--LGKTTREMM   74 (1006)
T ss_pred             cEEEEEEEecCCEEEEEEecCCc--ccCCCCCeeEEEEeC-CCC--eeEEEEecCcCCCCCEEEEEEEe--cCcHHHHHH
Confidence            47999999999999999998876  378999999999986 333  36999999988777899999998  69999998 


Q ss_pred             ccCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788          136 REMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA  214 (258)
Q Consensus       136 ~~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~  214 (258)
                      .++++||.+ .+.||+|.+.... ..++++|||||+||||++++++++.+.+   .+++++|++|+.+++++.+||+++.
T Consensus        75 ~~lk~Gd~l~~v~GPlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R~~~~l~~~del~~~~  150 (1006)
T PRK12775         75 TKFKAGDTFEDFVGPLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFRNKDLVFWEDKFGKYC  150 (1006)
T ss_pred             hcCCCCCEEeeeecCCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCCChHHcccHHHHHhhc
Confidence            699999999 7999999854322 3478999999999999999999998875   5799999999999999999998765


Q ss_pred             hhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      .+    +.+.   +  +++|.|.+|++++. +.+.+++
T Consensus       151 ~~----~~v~---t--ddgs~G~~G~vt~~-l~~~l~~  178 (1006)
T PRK12775        151 DD----LIVC---T--DDGSYGKPGFVTAA-LKEVCEK  178 (1006)
T ss_pred             Cc----EEEE---E--CCCCCCCCCChHHH-HHHHhcc
Confidence            32    3222   2  45678889999884 5666544

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.92  E-value=2.6e-23  Score=197.46  Aligned_cols=168  Identities=17%  Similarity=0.249  Sum_probs=132.2

Q ss_pred             EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCCccccccc
Q 042788           58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKGRMAHHFR  136 (258)
Q Consensus        58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G~~S~~L~  136 (258)
                      .+++.+..++++.++++..+..   ..|+||||+++++| ..+..++|||||+|.|. +++.+++.||.  .|.+|+.|.
T Consensus       315 ~vvs~~~~~~~~v~l~i~r~~~---~~f~PGQfV~L~vp-~~s~~q~HPFSIaS~p~~~~~~l~~~IK~--~gG~T~~L~  388 (722)
T PLN02844        315 CILSARLFPCKAIELVLPKDPG---LKYAPTSVIFMKIP-SISRFQWHPFSITSSSNIDDHTMSVIIKC--EGGWTNSLY  388 (722)
T ss_pred             EEEEEEEecCCEEEEEEECCCC---CCcCCCeeEEEEEC-CCCceeEEEEEeecCCCCCCCeEEEEEEe--CCCchHHHH
Confidence            4556677788998888876543   78999999999998 55667899999999763 55789999998  567776652


Q ss_pred             -c----CCCC------CEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCC----CCCeEEEEEEeCCC
Q 042788          137 -E----MHEG------EYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPK----DKTNVHLIYANVTV  201 (258)
Q Consensus       137 -~----l~~G------d~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~----~~~~v~l~~~~r~~  201 (258)
                       .    +++|      .++.++||||.+..+...++++++||||+||||++++++++.+++.    ..+++.|+|++|+.
T Consensus       389 ~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~  468 (722)
T PLN02844        389 NKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKS  468 (722)
T ss_pred             HHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCH
Confidence             2    3345      3789999999976555567899999999999999999999987532    13579999999999


Q ss_pred             cccccHHHHHH-----HHhhCCCCeEEEEEEcCCCCC
Q 042788          202 GDILLKDELDS-----FATNSPNRFKVYYVLSQPTEV  233 (258)
Q Consensus       202 ~d~~~~~eL~~-----l~~~~~~~~~v~~~~s~~~~~  233 (258)
                      +|+.+.|++..     +.++ .+ +++++++||++..
T Consensus       469 ~dL~~~del~~~l~~~~~~~-~~-lkl~iyVTRE~~~  503 (722)
T PLN02844        469 QDICLLNPISSLLLNQSSNQ-LN-LKLKVFVTQEEKP  503 (722)
T ss_pred             HHhhhHHHHHHHhHHhHHHh-cC-ceEEEEECCCCCC
Confidence            99999999863     2222 24 8999999987654

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.89  E-value=5.3e-23  Score=183.79  Aligned_cols=151  Identities=17%  Similarity=0.187  Sum_probs=124.5

Q ss_pred             CCCCCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEEe--------cCCcccccccc-CCCCCEEEEeccc-c
Q 042788           83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKMY--------PKGRMAHHFRE-MHEGEYLPVKGPK-G  151 (258)
Q Consensus        83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~gP~-G  151 (258)
                      ..+.||||+.+..+     ...|+|||+|.|.. ++.++|+|+..        +.|.+|.||++ +++||+|.+.+|. |
T Consensus       130 ~~~~~gq~l~l~~~-----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~  204 (360)
T cd06199         130 ARLTAEELLDLLRP-----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNP  204 (360)
T ss_pred             CCCCHHHHHHhCcC-----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEecCC
Confidence            57899999999633     25799999999964 57899999875        57999999986 4699999999755 5


Q ss_pred             eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788          152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQP  230 (258)
Q Consensus       152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~  230 (258)
                      .|.++.+...+++|||+||||||+++++++..... ...+++|+|++|+. +|++|.+||+++++++++ ++++.++|++
T Consensus       205 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~-~~~~~a~Sr~  282 (360)
T cd06199         205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVL-TRLDTAFSRD  282 (360)
T ss_pred             CcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCC-eEEEEEEccC
Confidence            69887665689999999999999999999887653 34689999999997 699999999999988777 8999999986


Q ss_pred             CCCCCCccccccHH
Q 042788          231 TEVWNGGIGHVSKE  244 (258)
Q Consensus       231 ~~~~~~~~G~i~~~  244 (258)
                      .+.    .+++++.
T Consensus       283 ~~~----~~yVq~~  292 (360)
T cd06199         283 QAE----KVYVQDR  292 (360)
T ss_pred             CCC----CccHHHH
Confidence            542    4566553

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=99.89  E-value=1.5e-22  Score=148.18  Aligned_cols=99  Identities=31%  Similarity=0.655  Sum_probs=90.2

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      +++|++++.++++++.++|+.++......|.||||+.|+++ .++....|+|||++.+.+++.++|+||.+++|.+|+||
T Consensus         1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~-~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L   79 (99)
T PF00970_consen    1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVP-INGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYL   79 (99)
T ss_dssp             EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEE-ETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHH
T ss_pred             CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEc-cCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHH
Confidence            58999999999999999999987655678999999999999 67778999999999998888999999999999999999


Q ss_pred             ccCCCCCEEEEecccceeee
Q 042788          136 REMHEGEYLPVKGPKGRLKY  155 (258)
Q Consensus       136 ~~l~~Gd~v~v~gP~G~f~~  155 (258)
                      +++++||+|.++||+|+|.+
T Consensus        80 ~~l~~Gd~v~i~gP~G~f~y   99 (99)
T PF00970_consen   80 HQLKPGDEVEIRGPYGNFTY   99 (99)
T ss_dssp             HTSCTTSEEEEEEEESSEEE
T ss_pred             HhCCCCCEEEEEEcccccCC
Confidence            99999999999999999875

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.89  E-value=1.7e-22  Score=182.06  Aligned_cols=139  Identities=17%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             CeeeeeccccccCCC-CCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCc
Q 042788          101 NEVIRPYTPITLDSD-IGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGT  170 (258)
Q Consensus       101 ~~~~R~ySi~s~~~~-~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGt  170 (258)
                      ....|+|||+|+|.. ++.++|+|+..         +.|.+|+||+++++||+|.+.+|.|.|.++.+..+++||||+||
T Consensus       161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~~~~~plImIa~Gt  240 (382)
T cd06207         161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPKDPKKPIIMVGPGT  240 (382)
T ss_pred             CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCCCCCCCCEEEEcCCc
Confidence            356799999999963 58999999976         46999999999999999999999999988766568999999999


Q ss_pred             cHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          171 GITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       171 GItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      ||||+++++++....   +....++.|+|++|+. +|++|.+||+++++..+. +++++++|+++..    +|++++.
T Consensus       241 GIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~Srd~~~----~~yVq~~  313 (382)
T cd06207         241 GLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVL-TTLGTAFSRDQPK----KVYVQDL  313 (382)
T ss_pred             cHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCC-ceEEEEecCCCCC----ceEhHHH
Confidence            999999999987532   2245789999999999 899999999999988777 8999999986542    4666653

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.88  E-value=3.6e-22  Score=180.59  Aligned_cols=143  Identities=16%  Similarity=0.215  Sum_probs=120.2

Q ss_pred             eeeeeccccccCCC-CCEEEEEEEEecC---CccccccccCC-----CCCEEEEec-ccceeeecCC-CCceEEEEEcCc
Q 042788          102 EVIRPYTPITLDSD-IGYFELVVKMYPK---GRMAHHFREMH-----EGEYLPVKG-PKGRLKYKVG-QARAFGMIAGGT  170 (258)
Q Consensus       102 ~~~R~ySi~s~~~~-~~~l~~~Vk~~~~---G~~S~~L~~l~-----~Gd~v~v~g-P~G~f~~~~~-~~~~vvliagGt  170 (258)
                      ...|+|||+|+|.. ++.++|+|+..+.   |.+|.||++++     +|++|.+.+ |.|.|.++.+ ...+++|||+||
T Consensus       172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~Gt  251 (398)
T cd06203         172 LQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPGT  251 (398)
T ss_pred             CCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCCc
Confidence            45799999999854 5899999998764   99999999887     999999998 6777988655 457999999999


Q ss_pred             cHHHHHHHHHHHHhC-----CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          171 GITPMFQLTRAILEN-----PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       171 GItp~~sil~~l~~~-----~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      ||||+++++++....     .....++.|+|++|+. +|++|.+||++++++.+. +++++++|++++.| +.+|||++.
T Consensus       252 GIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~-~~~~~a~SRd~~~~-g~k~yVqd~  329 (398)
T cd06203         252 GVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL-TRLIVAFSRDENDG-STPKYVQDK  329 (398)
T ss_pred             ChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC-ceEEEEECCCCCCC-CCceecchH
Confidence            999999999987651     2234689999999999 699999999999988777 88999999976654 568999875


Q ss_pred             HH
Q 042788          245 MI  246 (258)
Q Consensus       245 ~l  246 (258)
                      +.
T Consensus       330 l~  331 (398)
T cd06203         330 LE  331 (398)
T ss_pred             HH
Confidence            44

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.87  E-value=3.2e-22  Score=180.29  Aligned_cols=151  Identities=19%  Similarity=0.242  Sum_probs=121.0

Q ss_pred             CCCCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEEec----------CCccccccccCCCCCEEEE--eccc
Q 042788           84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKMYP----------KGRMAHHFREMHEGEYLPV--KGPK  150 (258)
Q Consensus        84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~~~----------~G~~S~~L~~l~~Gd~v~v--~gP~  150 (258)
                      ....||++.+. |    ....|+|||+|+|.. ++.++++|+..+          .|.+|+||+++++||+|.+  .+|.
T Consensus       146 ~~~~~~~l~~~-p----~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~  220 (384)
T cd06206         146 ALPLATFLAML-P----PMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSH  220 (384)
T ss_pred             CCCHHHHHHhC-c----ccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCC
Confidence            45679999885 4    136799999999843 566777776642          6889999999999999985  5899


Q ss_pred             ceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEE
Q 042788          151 GRLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYV  226 (258)
Q Consensus       151 G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~  226 (258)
                      |.|.++.+..++++||||||||||+++++++....   +....+++|+|++|+. +|++|.+||+++++ .++ ++++++
T Consensus       221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~-~~~-~~l~~a  298 (384)
T cd06206         221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEA-AGV-VSVRRA  298 (384)
T ss_pred             CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHH-CCC-eEEEEE
Confidence            99988766668999999999999999999987642   2234689999999999 79999999999987 455 999999


Q ss_pred             EcCCCCCCCCccccccHH
Q 042788          227 LSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       227 ~s~~~~~~~~~~G~i~~~  244 (258)
                      +|+++++   .+|++++.
T Consensus       299 ~Sr~~~~---~~~yVq~~  313 (384)
T cd06206         299 YSRPPGG---GCRYVQDR  313 (384)
T ss_pred             ecccCCC---CCEechhh
Confidence            9986543   24677654

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.87  E-value=3e-22  Score=189.16  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=125.8

Q ss_pred             CCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEe--------cCCcccccccc-CCCCCEEEEeccc-c
Q 042788           83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMY--------PKGRMAHHFRE-MHEGEYLPVKGPK-G  151 (258)
Q Consensus        83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~gP~-G  151 (258)
                      ..+.||||+.+..+     ...|+|||+|+|. .++.++|+|+..        +.|.+|.||.+ +++||+|.+.+|. |
T Consensus       367 ~~~~~gq~v~ll~~-----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~  441 (597)
T TIGR01931       367 ADLDAEQLISLLRP-----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPND  441 (597)
T ss_pred             CCCCHHHHHHhCcc-----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCC
Confidence            57899999998654     2579999999985 357899999854        57999999975 9999999999865 4


Q ss_pred             eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788          152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQP  230 (258)
Q Consensus       152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~  230 (258)
                      .|.++.+..++++|||+||||||+++++++....+ ...+++|+|++|+ .+|++|.+||+++.++... .++..++||+
T Consensus       442 ~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l-~~l~~afSRd  519 (597)
T TIGR01931       442 NFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVL-TKMDLAFSRD  519 (597)
T ss_pred             cccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCC-ceeEEEEecC
Confidence            69887666689999999999999999999988763 3468999999999 7799999999999888766 6788888884


Q ss_pred             CCCCCCccccccHHHH
Q 042788          231 TEVWNGGIGHVSKEMI  246 (258)
Q Consensus       231 ~~~~~~~~G~i~~~~l  246 (258)
                      .    +.+||+++.+.
T Consensus       520 ~----~~k~yVqd~l~  531 (597)
T TIGR01931       520 Q----AEKIYVQHRIR  531 (597)
T ss_pred             C----CCCccHHHHHH
Confidence            2    23577776543

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>PRK06214 sulfite reductase; Provisional

Probab=99.85  E-value=1.5e-19  Score=167.34  Aligned_cols=133  Identities=17%  Similarity=0.209  Sum_probs=107.0

Q ss_pred             eeeccccccCC-CCCEEEEEEEEe--------cCCccccccc-cCCCCCEEEEec--ccceeeecCCCCceEEEEEcCcc
Q 042788          104 IRPYTPITLDS-DIGYFELVVKMY--------PKGRMAHHFR-EMHEGEYLPVKG--PKGRLKYKVGQARAFGMIAGGTG  171 (258)
Q Consensus       104 ~R~ySi~s~~~-~~~~l~~~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~g--P~G~f~~~~~~~~~vvliagGtG  171 (258)
                      .|+|||+|.|. +++.++|+|+..        ..|.+|.||+ ++++||+|.+.+  |.| |.++.+...++||||+|||
T Consensus       316 pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp~~~~~PiImIg~GTG  394 (530)
T PRK06214        316 PRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG-FALPADPNTPIIMVGPGTG  394 (530)
T ss_pred             cEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCC-CccCCCCCCCEEEEcCCee
Confidence            59999999985 368899999864        4699999996 799999998864  445 8876555579999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccH
Q 042788          172 ITPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSK  243 (258)
Q Consensus       172 Itp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~  243 (258)
                      ||||++++++..... ...+++|+|++|+ .+|++|.+||+++.+..+. .+++..+||+...    ++|+++
T Consensus       395 IAPfrsfLq~r~~~~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l-~~l~~afSRd~~~----k~YVQ~  461 (530)
T PRK06214        395 IAPFRAFLHERAATK-APGRNWLFFGHQRSATDFFYEDELNGLKAAGVL-TRLSLAWSRDGEE----KTYVQD  461 (530)
T ss_pred             HHHHHHHHHHHHHhc-CCCCeEEEEEecCChhhhHHHHHHHHHHHhCCc-eEEEEEEecCCCC----CCchhh
Confidence            999999999876542 2367899999965 6699999999999988776 7788888886432    345554

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.84  E-value=1.3e-20  Score=171.38  Aligned_cols=138  Identities=16%  Similarity=0.183  Sum_probs=113.2

Q ss_pred             eeeeeccccccCC-CCCEEEEEEEEecC---------CccccccccCC---------------------CCCEEEEeccc
Q 042788          102 EVIRPYTPITLDS-DIGYFELVVKMYPK---------GRMAHHFREMH---------------------EGEYLPVKGPK  150 (258)
Q Consensus       102 ~~~R~ySi~s~~~-~~~~l~~~Vk~~~~---------G~~S~~L~~l~---------------------~Gd~v~v~gP~  150 (258)
                      ...|+|||+|+|. +++.++++|+..+.         |.+|+||+++.                     +||.|.+..|.
T Consensus       176 ~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~  255 (416)
T cd06204         176 LQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR  255 (416)
T ss_pred             CCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEec
Confidence            3579999999995 45789999887543         88999998666                     89999999999


Q ss_pred             ceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEE
Q 042788          151 GRLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYV  226 (258)
Q Consensus       151 G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~  226 (258)
                      |.|.++.+...++||||+||||||+++++++....   +....+++|+|++|+. +|++|.+||++|++.+++ ++++.+
T Consensus       256 g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~~l~~a  334 (416)
T cd06204         256 SNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGL-LELVTA  334 (416)
T ss_pred             CCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCc-eEEEEE
Confidence            99988766668999999999999999999976432   2234689999999998 799999999999887776 999999


Q ss_pred             EcCCCCCCCCccccccHH
Q 042788          227 LSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       227 ~s~~~~~~~~~~G~i~~~  244 (258)
                      +|++++    .+|++++.
T Consensus       335 ~Sr~~~----~k~yVq~~  348 (416)
T cd06204         335 FSREQP----KKVYVQHR  348 (416)
T ss_pred             ECcCCC----CCcchHHH
Confidence            998644    24555543

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=99.84  E-value=2.1e-20  Score=169.39  Aligned_cols=140  Identities=17%  Similarity=0.159  Sum_probs=112.8

Q ss_pred             eeeeeccccccCC-CCCEEEEEEEEe-----------cCCccccccccCCCCCEEEEeccc-ceeeecCCCCceEEEEEc
Q 042788          102 EVIRPYTPITLDS-DIGYFELVVKMY-----------PKGRMAHHFREMHEGEYLPVKGPK-GRLKYKVGQARAFGMIAG  168 (258)
Q Consensus       102 ~~~R~ySi~s~~~-~~~~l~~~Vk~~-----------~~G~~S~~L~~l~~Gd~v~v~gP~-G~f~~~~~~~~~vvliag  168 (258)
                      ...|+|||+|+|. .++.++|+|+..           ..|.+|+||+++++||+|.+.++. |.|.++.+..+++||||+
T Consensus       175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~  254 (406)
T cd06202         175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGP  254 (406)
T ss_pred             cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCCCCCCCEEEEcC
Confidence            4589999999985 356777777653           258899999999999999998754 468887666689999999


Q ss_pred             CccHHHHHHHHHHHHhC-------CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcccc
Q 042788          169 GTGITPMFQLTRAILEN-------PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGH  240 (258)
Q Consensus       169 GtGItp~~sil~~l~~~-------~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~  240 (258)
                      |||||||++++++....       .....++.|+|++|+. +|.+|.+||+++.+..+. ++++.++|++++.   .+||
T Consensus       255 GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~~~~a~SR~~~~---~k~y  330 (406)
T cd06202         255 GTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVL-TEVYTALSREPGK---PKTY  330 (406)
T ss_pred             CcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCC-ceEEEEEcCCCCC---CCee
Confidence            99999999999975421       1234689999999999 799999999999988776 7899999986542   3578


Q ss_pred             ccHHH
Q 042788          241 VSKEM  245 (258)
Q Consensus       241 i~~~~  245 (258)
                      |++.+
T Consensus       331 Vq~~l  335 (406)
T cd06202         331 VQDLL  335 (406)
T ss_pred             hhhHH
Confidence            87743

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=99.83  E-value=1.7e-20  Score=176.71  Aligned_cols=153  Identities=15%  Similarity=0.129  Sum_probs=123.4

Q ss_pred             CCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEe--------cCCccccccc-cCCCCCEEEEecccc-
Q 042788           83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMY--------PKGRMAHHFR-EMHEGEYLPVKGPKG-  151 (258)
Q Consensus        83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~gP~G-  151 (258)
                      ..+.+|||+.+..+     ..+|+|||+|+|. .++.++|+|+..        ..|.+|.||. .+++||+|.+.+|.| 
T Consensus       370 ~~~~~~q~l~ll~~-----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~  444 (600)
T PRK10953        370 AQLDAEQLIGLLRP-----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEHND  444 (600)
T ss_pred             CCCCHHHHHHhCCC-----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEeccCC
Confidence            36789999988644     2579999999984 456788887542        3688899996 699999999999876 


Q ss_pred             eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788          152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQP  230 (258)
Q Consensus       152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~  230 (258)
                      .|.++.+...++||||+||||||+++++++....+ ...+++|+|++|+ ..|++|.+||+++.+.... .++...+||+
T Consensus       445 ~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l-~~l~~afSRd  522 (600)
T PRK10953        445 NFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLL-TRIDLAWSRD  522 (600)
T ss_pred             cccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCc-ceEEEEECCC
Confidence            59887666689999999999999999999988763 3468999999999 6799999999999988664 5688888886


Q ss_pred             CCCCCCccccccHHHH
Q 042788          231 TEVWNGGIGHVSKEMI  246 (258)
Q Consensus       231 ~~~~~~~~G~i~~~~l  246 (258)
                      +.    .++||++.+.
T Consensus       523 ~~----~k~YVQ~~l~  534 (600)
T PRK10953        523 QK----EKIYVQDKLR  534 (600)
T ss_pred             CC----CCCcHHHHHH
Confidence            43    3567766443

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=2.8e-18  Score=162.99  Aligned_cols=167  Identities=16%  Similarity=0.246  Sum_probs=130.6

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH  134 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~  134 (258)
                      ...++.+...+..++.+++++.|.   .+.|+||||++|.+| .-...++|||||+|+| +++.+.++||.  .|++|+.
T Consensus       355 ~~~~i~~~~llp~~vi~L~~~Kp~---~f~y~~Gqyifv~~p-~ls~~qwHPFTItSsp-~dd~lsvhIk~--~g~wT~~  427 (646)
T KOG0039|consen  355 KNVKIAKVVLLPSDVLELIMSKPP---GFKYKPGQYIFVNCP-SLSKLEWHPFTITSAP-EDDFLSVHIKA--LGDWTEK  427 (646)
T ss_pred             cCceEEEEEEcCCCeEEEEEeCCC---CCCCCCCCEEEEECc-cccccccCCceeecCC-CCCEEEEEEEe--cCcHHHH
Confidence            458899999999999999999885   389999999999999 6677899999999999 56899999999  8999987


Q ss_pred             cc-cCC------------CCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCC--------------
Q 042788          135 FR-EMH------------EGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPK--------------  187 (258)
Q Consensus       135 L~-~l~------------~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~--------------  187 (258)
                      |. .+.            ..-++.++||||.-..+-..++.+++||||+|+||+.|+++++..+..              
T Consensus       428 L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~  507 (646)
T KOG0039|consen  428 LRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDS  507 (646)
T ss_pred             HHHHHhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCcccccccc
Confidence            73 222            133689999999966555678899999999999999999999986521              


Q ss_pred             -CCCeEEEEEEeCCCcccc-cHHHHHHHHhhCCCC-eEEEEEEc
Q 042788          188 -DKTNVHLIYANVTVGDIL-LKDELDSFATNSPNR-FKVYYVLS  228 (258)
Q Consensus       188 -~~~~v~l~~~~r~~~d~~-~~~eL~~l~~~~~~~-~~v~~~~s  228 (258)
                       ...++.++|.+|...+.. +.+.+.++...+..+ .+++.+.+
T Consensus       508 ~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t  551 (646)
T KOG0039|consen  508 LKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVT  551 (646)
T ss_pred             ceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehh
Confidence             224688999988887765 455555554322111 45555554

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=99.70  E-value=4.2e-17  Score=135.25  Aligned_cols=135  Identities=21%  Similarity=0.278  Sum_probs=108.7

Q ss_pred             CCCCCcEEEEEEEEEEeCCCEeEEEEECCCCC-ccCCCCCCcEEEEEEecCCCC--eeeeeccccccC-CCCCEEEEEEE
Q 042788           49 LDPENFKEFKLTKRTPISHNTAKFRFALPKST-SILGLPVGQHILCRGKDSEGN--EVIRPYTPITLD-SDIGYFELVVK  124 (258)
Q Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~-~~~~~~pGQ~v~l~~~~~~g~--~~~R~ySi~s~~-~~~~~l~~~Vk  124 (258)
                      -.|++|.+++|++.+.++.|++.+.+.+.++. ......|||||.+.-. ..|.  ..-|-|+.+++. ...+.+.|.||
T Consensus       144 ~~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~-~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr  222 (385)
T KOG3378|consen  144 RGWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWE-IPGLSHKTLREYSLSNRVDTCRNQFRISVR  222 (385)
T ss_pred             cCCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeec-CCccchhHHHHHHHhhhhhhhccceeEEEe
Confidence            34678999999999999999999999987763 2356789999998644 4443  223444544433 23478999999


Q ss_pred             EecCCccccccc-cCCCCCEEEEecccceeeecC---CCCceEEEEEcCccHHHHHHHHHHHHh
Q 042788          125 MYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKV---GQARAFGMIAGGTGITPMFQLTRAILE  184 (258)
Q Consensus       125 ~~~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~---~~~~~vvliagGtGItp~~sil~~l~~  184 (258)
                      +...|.+|+|+| ++++||.|.++.|-|+|.++.   +...+++++|||+||||+++|++..+.
T Consensus       223 ~~A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~  286 (385)
T KOG3378|consen  223 RVAGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL  286 (385)
T ss_pred             ehhchhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh
Confidence            999999999996 899999999999999998753   345889999999999999999987665

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.68  E-value=4.9e-16  Score=150.70  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=106.9

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC--C-eeeeeccccccCCCCCEEEEEEEEecCCcc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--N-EVIRPYTPITLDSDIGYFELVVKMYPKGRM  131 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g--~-~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~  131 (258)
                      ..++|++++.++++++.++++.|..  ...++||||+.|+.+ ..+  . ...||+|+++.+.+.+.++|+++.  .|.+
T Consensus       791 l~~~Vv~~~~lap~i~~L~l~aP~i--A~~~kPGQFVmL~~~-~~g~~~l~~p~P~SI~~vD~e~g~It~i~rv--VGkg  865 (1028)
T PRK06567        791 LTSRVNKINILDDKTFELIIHSPLA--AKNFKFGQFFRLQNY-SEDAAKLIEPVALSPIDIDVEKGLISFIVFE--VGKS  865 (1028)
T ss_pred             hceEEEEEEEecCCEEEEEEeCcch--hhcCCCCceEEEEeC-CCCCccccCceeEEeeccCCCCCEEEEEEEE--EChH
Confidence            4789999999999999999998864  246899999999975 223  2 245799999998888999999999  7999


Q ss_pred             ccccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEE
Q 042788          132 AHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYA  197 (258)
Q Consensus       132 S~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~  197 (258)
                      |+.|+++++||.+.+.||+|+ |..+.  .+++++||||+|+||   +++++.+.+   .++..+..
T Consensus       866 T~~Ls~l~~Gd~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp---Lak~Lk~~G---~~V~~~~~  924 (1028)
T PRK06567        866 TSLCKTLSENEKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG---LLKVLKENN---NEVIFVTY  924 (1028)
T ss_pred             HHHHhcCCCCCEEEEEcccCCCCCCCC--CCeEEEEEccccHHH---HHHHHHHCC---CeEEEEEc
Confidence            999999999999999999998 66542  478999999999997   557776654   44544443

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.66  E-value=5e-16  Score=115.25  Aligned_cols=85  Identities=42%  Similarity=0.782  Sum_probs=75.7

Q ss_pred             EEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       165 liagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      ||||||||||++++++++.++ ....+++|+|++|+.+|++|.++|+++++++++++++..+ ++++++|.+..|++++.
T Consensus         1 lIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~   78 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLER-NDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDL   78 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHH-TCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHH
T ss_pred             CeecceeHHHHHHHHHHHHHh-CCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHH
Confidence            799999999999999999987 4568999999999999999999999999999987887777 66678888999999998


Q ss_pred             HHhhhCC
Q 042788          245 MIQMHCP  251 (258)
Q Consensus       245 ~l~~~~~  251 (258)
                      ++++.++
T Consensus        79 ~~~~~~~   85 (109)
T PF00175_consen   79 LLEDLLP   85 (109)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhcc
Confidence            8776654

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=99.65  E-value=1.3e-15  Score=142.20  Aligned_cols=135  Identities=18%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             eeeccccccCCCC-CEEEEEEEEe--------cCCccccccccCCC-CCEEEEecccc-eeeecCCCCceEEEEEcCccH
Q 042788          104 IRPYTPITLDSDI-GYFELVVKMY--------PKGRMAHHFREMHE-GEYLPVKGPKG-RLKYKVGQARAFGMIAGGTGI  172 (258)
Q Consensus       104 ~R~ySi~s~~~~~-~~l~~~Vk~~--------~~G~~S~~L~~l~~-Gd~v~v~gP~G-~f~~~~~~~~~vvliagGtGI  172 (258)
                      +|.|||+|++... +.++++|...        ..|.+|.||.++.+ ||++.+....+ +|.++.+..++++|||.||||
T Consensus       373 PR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGI  452 (587)
T COG0369         373 PRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGTGI  452 (587)
T ss_pred             CeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCCCc
Confidence            6999999998543 6677766554        23678999976665 99999997777 588887767999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          173 TPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       173 tp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      |||++++++...++ ...+.+|+||+|+ ..|++|.+|++++.+..-. +++....||++..    +-||++.
T Consensus       453 APFRafvq~r~~~~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~-~~l~~AfSRdq~~----KiYVQd~  519 (587)
T COG0369         453 APFRAFVQERAANG-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVL-TRLDLAFSRDQEE----KIYVQDR  519 (587)
T ss_pred             hhHHHHHHHHHhcc-ccCceEEEecCCCCccchhhHHHHHHHHhcCCc-eeEEEEEeecCCC----CccHHHH
Confidence            99999999998875 3458999999999 6699999999998776434 8888999987643    3455554

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=99.56  E-value=1.1e-14  Score=136.18  Aligned_cols=130  Identities=18%  Similarity=0.248  Sum_probs=100.6

Q ss_pred             eeeeeccccccCC-CCCEEEEEEEE--ecC--------CccccccccCCCCCEEEEecccce--eeecCCCCceEEEEEc
Q 042788          102 EVIRPYTPITLDS-DIGYFELVVKM--YPK--------GRMAHHFREMHEGEYLPVKGPKGR--LKYKVGQARAFGMIAG  168 (258)
Q Consensus       102 ~~~R~ySi~s~~~-~~~~l~~~Vk~--~~~--------G~~S~~L~~l~~Gd~v~v~gP~G~--f~~~~~~~~~vvliag  168 (258)
                      ..+|+|||+|++. .++.+.+++-.  ++.        |..|+||.++++|+.+..-.|.+.  |.++++...+++|||.
T Consensus       420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~PiIMIGp  499 (645)
T KOG1158|consen  420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPSTPIIMIGP  499 (645)
T ss_pred             ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceecCCCCCCcEEEEcC
Confidence            4689999999873 33555554433  322        778999999999999986666776  6777667789999999


Q ss_pred             CccHHHHHHHHHHHHhCCC----CCCeEEEEEEeCCCccc-ccHHHHHHHHhhCCCCeEEEEEEcCCCC
Q 042788          169 GTGITPMFQLTRAILENPK----DKTNVHLIYANVTVGDI-LLKDELDSFATNSPNRFKVYYVLSQPTE  232 (258)
Q Consensus       169 GtGItp~~sil~~l~~~~~----~~~~v~l~~~~r~~~d~-~~~~eL~~l~~~~~~~~~v~~~~s~~~~  232 (258)
                      |||||||++++++......    -...++|+||+|+.++. +|.+|++++.+..-. +++...+||++.
T Consensus       500 GTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l-~~l~~A~SReq~  567 (645)
T KOG1158|consen  500 GTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGIL-TRLDVAFSREQT  567 (645)
T ss_pred             CCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcc-hhheeeeeccCC
Confidence            9999999999998876421    11228999999998855 899999999665444 788899999874

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=99.52  E-value=4.4e-13  Score=112.78  Aligned_cols=148  Identities=18%  Similarity=0.246  Sum_probs=117.9

Q ss_pred             CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCc-EEEEEEecCCCC-------------------eeeeeccccc
Q 042788           52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQ-HILCRGKDSEGN-------------------EVIRPYTPIT  111 (258)
Q Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ-~v~l~~~~~~g~-------------------~~~R~ySi~s  111 (258)
                      ...+.++|+.++.++++..+++|..++........+|+ |+.|.+|...+.                   ...|.|||.+
T Consensus        15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~   94 (265)
T COG2375          15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRA   94 (265)
T ss_pred             ccceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeee
Confidence            35678999999999999999999998874322335554 999999843222                   3489999999


Q ss_pred             cCCCCCEEEEEEEEe-cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCC
Q 042788          112 LDSDIGYFELVVKMY-PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKT  190 (258)
Q Consensus       112 ~~~~~~~l~~~Vk~~-~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~  190 (258)
                      .+.+.+++.+-+-.+ +.|.+|.|..+.++||++.+.||.|.+..++ ..+.++|+|.-|++..+..+|+++...    .
T Consensus        95 ~d~~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~p~~-~~~~~lLigDetAlPAIa~iLE~lp~~----~  169 (265)
T COG2375          95 VDAAAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLVPPE-AADWYLLIGDETALPAIARILETLPAD----T  169 (265)
T ss_pred             ecccccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCCCCC-CcceEEEeccccchHHHHHHHHhCCCC----C
Confidence            988889999977666 8899999999999999999999999965544 468889999999999999999998765    2


Q ss_pred             eEEEEEEeCCCccc
Q 042788          191 NVHLIYANVTVGDI  204 (258)
Q Consensus       191 ~v~l~~~~r~~~d~  204 (258)
                      +.+.+-.+.+.+|.
T Consensus       170 ~~~a~lev~d~ad~  183 (265)
T COG2375         170 PAEAFLEVDDAADR  183 (265)
T ss_pred             ceEEEEEeCChHHh
Confidence            44555555555543

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=99.40  E-value=6.5e-13  Score=118.44  Aligned_cols=121  Identities=19%  Similarity=0.317  Sum_probs=96.0

Q ss_pred             eeeccccccCCCCCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHH
Q 042788          104 IRPYTPITLDSDIGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITP  174 (258)
Q Consensus       104 ~R~ySi~s~~~~~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp  174 (258)
                      +|.|||+|.+.. ..++++|..+         ..|.+|+||.+|++|+++.+.---|.+..+.....+++|||-|||+||
T Consensus       368 PR~fSIas~~~~-~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAP  446 (574)
T KOG1159|consen  368 PRAFSIASSPGA-HHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAP  446 (574)
T ss_pred             cceeeeccCCCC-CceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccCCCCCCCeEEEcCCCCccc
Confidence            699999999876 3488766543         469999999999999999888777887666555689999999999999


Q ss_pred             HHHHHHHHHhCCCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCCCeEEEEEEcCCCC
Q 042788          175 MFQLTRAILENPKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNRFKVYYVLSQPTE  232 (258)
Q Consensus       175 ~~sil~~l~~~~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~  232 (258)
                      +++++++-..++  .....|+||||+.+ |.+|.+|..++..     ..++..+||+++
T Consensus       447 fRa~i~er~~q~--~~~~~lFfGCR~K~~Df~y~~eW~~~~~-----~~~~~AFSRDqe  498 (574)
T KOG1159|consen  447 FRALIQERIYQG--DKENVLFFGCRNKDKDFLYEDEWTELNK-----RAFHTAFSRDQE  498 (574)
T ss_pred             HHHHHHHHHhhc--cCCceEEEecccCCccccccchhhhhhc-----chhhhhcccccc
Confidence            999999887543  23447899999987 8889988777654     334446777655

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=99.36  E-value=2.7e-12  Score=96.48  Aligned_cols=96  Identities=18%  Similarity=0.291  Sum_probs=65.5

Q ss_pred             EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC--------------------eeeeeccccccCCCCC
Q 042788           58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN--------------------EVIRPYTPITLDSDIG  117 (258)
Q Consensus        58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~--------------------~~~R~ySi~s~~~~~~  117 (258)
                      +|++++.+++++++++|..++........+|||+.|.+|.....                    ...|.||+.+.+.+.+
T Consensus         1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~   80 (117)
T PF08021_consen    1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG   80 (117)
T ss_dssp             EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred             CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence            68999999999999999998765444457999999999833222                    2689999999998889


Q ss_pred             EEEEEEEEecC-CccccccccCCCCCEEEEeccccee
Q 042788          118 YFELVVKMYPK-GRMAHHFREMHEGEYLPVKGPKGRL  153 (258)
Q Consensus       118 ~l~~~Vk~~~~-G~~S~~L~~l~~Gd~v~v~gP~G~f  153 (258)
                      ++.|.+-.+.. |.++.|+.++++||+|.+.||.|+|
T Consensus        81 ~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~~  117 (117)
T PF08021_consen   81 ELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGSF  117 (117)
T ss_dssp             EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE---
T ss_pred             EEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence            99997777766 9999999999999999999999986

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.34  E-value=9.6e-14  Score=102.58  Aligned_cols=91  Identities=16%  Similarity=0.230  Sum_probs=6.4

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC--CeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--NEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g--~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      .+++.+++.+.++++++++..+..  ...|+||||++|++| ..+  ..++|||||++.+.+ +.++|.||.  .|.+|+
T Consensus         3 ~~~~~~v~~~~~~~v~i~i~~~~~--~~~~~pGq~v~l~~p-~~s~~~~q~HPFTIas~~~~-~~i~l~ik~--~g~~T~   76 (105)
T PF08022_consen    3 NVRIASVELLPDDVVEITIPKPSS--PFKWKPGQYVFLSFP-SISKWFWQWHPFTIASSPED-NSITLIIKA--RGGWTK   76 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEEEcCCCEEEEEEECCCC--CCCCCCceEEEEEEc-CcCcCcccccccEeeccCCC-CEEEEEEEe--CCCchH
Confidence            356788888999999999987764  278999999999998 545  458999999999874 899999998  788998


Q ss_pred             ccccC--------CCCCEEEEecccce
Q 042788          134 HFREM--------HEGEYLPVKGPKGR  152 (258)
Q Consensus       134 ~L~~l--------~~Gd~v~v~gP~G~  152 (258)
                      .|.+.        ..+-++.|+||||.
T Consensus        77 ~L~~~~~~~~~~~~~~~~v~idGPYG~  103 (105)
T PF08022_consen   77 RLYEHLSESPSKQGNRLRVFIDGPYGA  103 (105)
T ss_dssp             --------------------TTSTTSH
T ss_pred             HHHHHHhhhcccCCCceEEEEECCCCC
Confidence            87532        23457889999996

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.02  E-value=3.8e-10  Score=88.97  Aligned_cols=73  Identities=18%  Similarity=0.395  Sum_probs=51.3

Q ss_pred             CceEEEEEcCccHHHHHHHHHHHHhCC----CCCCeEEEEEEeCCCcccc-cHHHHHHHHhhCC-CCeEEEEEEcCCCC
Q 042788          160 ARAFGMIAGGTGITPMFQLTRAILENP----KDKTNVHLIYANVTVGDIL-LKDELDSFATNSP-NRFKVYYVLSQPTE  232 (258)
Q Consensus       160 ~~~vvliagGtGItp~~sil~~l~~~~----~~~~~v~l~~~~r~~~d~~-~~~eL~~l~~~~~-~~~~v~~~~s~~~~  232 (258)
                      ++++||||||+||||++++++++....    ...++++|+|.+|+.+++. +.++|.++....+ ..+++.++++++.+
T Consensus         1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~   79 (156)
T PF08030_consen    1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS   79 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred             CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence            478999999999999999999997642    2457899999999999885 4545554433222 23999999987653

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]

Probab=85.38  E-value=3.6  Score=35.61  Aligned_cols=106  Identities=16%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             CcEEEEEEEEEEeCCC--EeEEEEECCCCCccCCCCCCcEEEEE--EecC---CCCeeeeeccccccCCCCCEEEEEEEE
Q 042788           53 NFKEFKLTKRTPISHN--TAKFRFALPKSTSILGLPVGQHILCR--GKDS---EGNEVIRPYTPITLDSDIGYFELVVKM  125 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~--~~~l~l~~~~~~~~~~~~pGQ~v~l~--~~~~---~g~~~~R~ySi~s~~~~~~~l~~~Vk~  125 (258)
                      ....++|++++++...  ++.=+..+-..  .-....|.+-.-.  +.+.   +-....|||-+     +.|.+.-.|+.
T Consensus       198 eL~~a~vt~ieplG~gDRVCVDTcsLm~~--gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRV-----NAG~VhaYi~v  270 (376)
T COG1465         198 ELVTATVTEIEPLGSGDRVCVDTCSLMTR--GEGMLVGSQSRGMFLVHSESEESPYVAARPFRV-----NAGAVHAYIRV  270 (376)
T ss_pred             EEEEEEEEEEeecCCCceEEEeeeccccc--CCceEeecccCcEEEEecccccCcccccCceee-----cccceeEEEEc
Confidence            3567899999998654  33222222111  1122222221111  1101   11123444442     23668889998


Q ss_pred             ecCCccccccccCCCCCEEEEecccceee------ecCCCCceEEEEEc
Q 042788          126 YPKGRMAHHFREMHEGEYLPVKGPKGRLK------YKVGQARAFGMIAG  168 (258)
Q Consensus       126 ~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~------~~~~~~~~vvliag  168 (258)
                        .|.-|+||+.|+.||+|.+---.|.-.      .+-. .+++++|-+
T Consensus       271 --Pg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIE-rRPl~lIeA  316 (376)
T COG1465         271 --PGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIE-RRPLMLIEA  316 (376)
T ss_pred             --CCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEee-cCceEEEEE
Confidence              788999999999999998875555421      1222 367777654

>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2

Probab=82.70  E-value=12  Score=26.14  Aligned_cols=77  Identities=14%  Similarity=0.263  Sum_probs=50.1

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      .++|.+++.. ++-.+++++.|+.. ...+..|++|.+.     |.    ..|+.+..+  +.+++.+-.  .-.....|
T Consensus         7 ~g~I~~i~~~-~~~~~~~i~~~~~~-~~~~~~g~SIavn-----Gv----cLTV~~~~~--~~f~~~l~~--eTl~~T~l   71 (85)
T PF00677_consen    7 TGKIISIEKN-GDSQRLRIEIPDKI-LSDLKIGGSIAVN-----GV----CLTVTDINE--DWFEVDLIP--ETLRRTTL   71 (85)
T ss_dssp             EEEEEEEEEE-SSEEEEEEEESTGG-GGTG-TTSEEEET-----TE----EEEEEEEET--TEEEEEEEH--HHHHCSSG
T ss_pred             EEEEEEEEEC-CCCEEEEEEcCHHH-HhhCccCcEEEEC-----Ce----eeEEEEecC--CEEEEechH--HHhhhchh
Confidence            4678888866 55778999988442 4678999987762     52    456777663  467776654  22223457


Q ss_pred             ccCCCCCEEEEe
Q 042788          136 REMHEGEYLPVK  147 (258)
Q Consensus       136 ~~l~~Gd~v~v~  147 (258)
                      ..+++||+|.++
T Consensus        72 ~~~~~G~~VNlE   83 (85)
T PF00677_consen   72 GNLKVGDRVNLE   83 (85)
T ss_dssp             GG--TTSEEEEE
T ss_pred             ccCCCCCEEEEe
Confidence            789999999886

5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed

Probab=80.68  E-value=2.8  Score=37.48  Aligned_cols=25  Identities=20%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             ceEEEEEcCcc--HHHHHHHHHHHHhC
Q 042788          161 RAFGMIAGGTG--ITPMFQLTRAILEN  185 (258)
Q Consensus       161 ~~vvliagGtG--Itp~~sil~~l~~~  185 (258)
                      +++++.|||||  |.|.+++++++.+.
T Consensus         2 ~~i~~~~GGTGGHi~Pala~a~~l~~~   28 (352)
T PRK12446          2 KKIVFTGGGSAGHVTPNLAIIPYLKED   28 (352)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence            47899999998  99999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
2eix_A	243	The Structure Of Physarum Polycephalum Cytochrome B		2e-55
1umk_A	275	The Structure Of Human Erythrocyte Nadh-Cytochrome		6e-45
1ndh_A	272	Crystal Structure Of Nadh-Cytochrome B5 Reductase F		7e-43
1ib0_A	274	Crystal Structure Of Rat B5r In Complex With Fad An		6e-42
1qx4_A	274	Structrue Of S127p Mutant Of Cytochrome B5 Reductas		1e-41
1cne_A	270	Structural Studies On Corn Nitrate Reductase: Refin		3e-39
1cnf_A	270	Structural Studies On Corn Nitrate Reductase: Refin		3e-39
1tvc_A	250	Fad And Nadh Binding Domain Of Methane Monooxygenas		9e-09
2b5o_A	402	Ferredoxin-nadp Reductase Length = 402		1e-04
1krh_A	338	X-Ray Stucture Of Benzoate Dioxygenase Reductase Le		3e-04
2bmw_A	304	Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl		8e-04
1h42_A	304	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		8e-04
2vyq_A	304	Ferredoxin:nadp Reductase Mutant With Thr 155 Repla		8e-04
1ogi_A	303	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		9e-04

>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5 Reductase Length = 243

Iteration: 1
 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 146/215 (67%), Gaps = 2/215 (0%)
Query: 44  KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEV 103
           K   +L+P  +K+F L ++  I+HNT  FRF L     ++GLP+GQH+  +    +G E+
Sbjct: 1   KREPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKAT-VDGKEI 59
Query: 104 IRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAF 163
            RPYTP++ D + GYF+L++K+Y KG+M+ +   ++ G++L V+GPKG+  YK    +  
Sbjct: 60  YRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEM 119
Query: 164 GMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKV 223
           GMIAGGTGITPM Q+ RAI++NPK+KT ++LI+ANV   DILL+ ELD  A    N FKV
Sbjct: 120 GMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILLRTELDDMAKKYSN-FKV 178
Query: 224 YYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           YYVL+ P   W GG+G VS +MI+ H   P+ DI+
Sbjct: 179 YYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIK 213

>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5 Reductase Length = 275

Iteration: 1
 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 131/222 (59%), Gaps = 26/222 (11%)
Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
            +L  R  ISH+T +FRFALP    ILGLPVGQHI    +  +GN V+RPYTPI+ D D 
Sbjct: 19  LRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDK 77
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
           G+ +LV+K+Y     PK    G+M+ +   M  G+ +  +GP G L Y+           
Sbjct: 78  GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDK 137
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
                +   ++ GMIAGGTGITPM Q+ RAI+++P D T  HL++AN T  DILL+ EL+
Sbjct: 138 KSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELE 197
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253
                   RFK++Y L +  E W+ G G V++EMI+ H P P
Sbjct: 198 ELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPP 239

>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig Liver At 2.4 Angstroms Resolution Length = 272

Iteration: 1
 Score =  170 bits (431), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 130/222 (58%), Gaps = 26/222 (11%)
Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
            +L  +  ++H+T +FRFALP    ILGLPVGQHI    +  +GN VIRPYTP++ D D 
Sbjct: 16  LRLIDKEVVNHDTRRFRFALPSPEHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDK 74
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
           G+ +LV+K+Y     PK    G+M+ +   M  G+ +  +GP G L Y+           
Sbjct: 75  GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDK 134
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
                +   ++ GMIAGGTGITPM Q+ RAI+++P D T  HL++AN T  DILL+ EL+
Sbjct: 135 KSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELE 194
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253
                   RFK++Y + +  E W+   G V++EMI+ H P P
Sbjct: 195 ELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLPPP 236

>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad Length = 274

Iteration: 1
 Score =  167 bits (423), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 132/223 (59%), Gaps = 26/223 (11%)
Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
            +L  +  +SH+T +FRFALP    ILGLP+GQHI    +  +GN VIRPYTP++ D D 
Sbjct: 18  LRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDK 76
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
           G+ +LVVK+Y     PK    G+M+ +   M+ G+ +  +GP G L Y+           
Sbjct: 77  GFVDLVVKVYFKETHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRADK 136
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
                V   ++ GMIAGGTGITPM Q+ RA+L++P D T  +L++AN +  DILL+ EL+
Sbjct: 137 KSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLRPELE 196
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA 254
                  +RFK++Y + +  + W+   G V++EMI+ H P P 
Sbjct: 197 ELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPG 239

>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase Length = 274

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 26/223 (11%)
Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
            +L  +  +SH+T +FRFALP    ILGLP+GQHI    +  +GN VIRPYTP++ D D 
Sbjct: 18  LRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDK 76
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
           G+ +LVVK+Y     PK    G+M  +   M+ G+ +  +GP G L Y+           
Sbjct: 77  GFVDLVVKVYFKETHPKFPAGGKMPQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRADK 136
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
                V   ++ GMIAGGTGITPM Q+ RA+L++P D T  +L++AN +  DILL+ EL+
Sbjct: 137 KSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLRPELE 196
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA 254
                  +RFK++Y + +  + W+   G V++EMI+ H P P 
Sbjct: 197 ELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPG 239

>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined Structure Of The Cytochrome B Reductase Fragment At 2.5 Angstroms, Its Adp Complex And An Active Site Mutant And Modeling Of The Cytochrome B Domain Length = 270

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 130/230 (56%), Gaps = 24/230 (10%)
Query: 50  DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTP 109
           +P      +L  +  +S +   FRF+LP    +LGLP+G+HI       EG   +R YTP
Sbjct: 8   NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT-IEGKLCMRAYTP 66
Query: 110 ITLDSDIGYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKY----- 155
            ++  +IG+F+L+VK+Y     PK    G M  +   +  G Y+ VKGP G ++Y     
Sbjct: 67  TSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGS 126
Query: 156 -----KVGQARAFGMIAGGTGITPMFQLTRAIL-ENPKDKTNVHLIYANVTVGDILLKDE 209
                K   AR   MI GG+GITPM+Q+ +A+L + P+D T +HL+YAN T  DILL+DE
Sbjct: 127 FVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDE 186
Query: 210 LDSFATNSPNRFKVYYVLSQ---PTEVWNGGIGHVSKEMIQMHCPTPAPD 256
           LD +A   P+R KV+YV+ Q   P E W   +G V++ +++ H P    D
Sbjct: 187 LDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD 236

>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined Structure Of The Cytochrome B Reductase Fragment At 2.5 Angstroms, Its Adp Complex And An Active Site Mutant And Modeling Of The Cytochrome B Domain Length = 270

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 129/230 (56%), Gaps = 24/230 (10%)
Query: 50  DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTP 109
           +P      +L  +  +S +   FRF+LP    +LGLP+G+HI       EG   +R YTP
Sbjct: 8   NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT-IEGKLCMRAYTP 66
Query: 110 ITLDSDIGYFELVVKMYPK---------GRMAHHFREMHEGEYLPVKGPKGRLKY----- 155
            ++  +IG+F+L+VK+Y K         G M  +   +  G Y+ VKGP G ++Y     
Sbjct: 67  TSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGS 126
Query: 156 -----KVGQARAFGMIAGGTGITPMFQLTRAIL-ENPKDKTNVHLIYANVTVGDILLKDE 209
                K   AR   MI GG+GITPM+Q+ +A+L + P+D T +HL+YAN T  DILL+DE
Sbjct: 127 FVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDE 186
Query: 210 LDSFATNSPNRFKVYYVLSQ---PTEVWNGGIGHVSKEMIQMHCPTPAPD 256
           LD +A   P+R KV+YV+ Q   P E W   +G V++ +++ H P    D
Sbjct: 187 LDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD 236

>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase Reductase From Methylococcus Capsulatus (Bath) Length = 250

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 100 GNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVG 158
           G +V R Y+P  L +  G  E ++++ P+GR + + R +   G+ L VKGP G    K  
Sbjct: 56  GTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKER 115
Query: 159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANV-TVGDILLKDELDSFATNS 217
                  +AGGTG+ P+  + R + E      N   IY  V T  ++   DEL S   + 
Sbjct: 116 GMAPRYFVAGGTGLAPVVSMVRQMQE--WTAPNETRIYFGVNTEPELFYIDELKSLERSM 173
Query: 218 PNRFKVYYVLSQPTEVWNGGIGH 240
            N   V   +  P+  W G  G 
Sbjct: 174 RN-LTVKACVWHPSGDWEGEQGS 195

>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 165 MIAGGTGITP----MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220
           M+A GTGI P    ++++ +   E+ K K    LI+      +IL KD+ +  A  +P+ 
Sbjct: 255 MLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDN 314
Query: 221 FKVYYVLSQPTEVWNGG 237
           F++ Y +S+  +  +GG
Sbjct: 315 FRLTYAISREQKTADGG 331

>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase Length = 338

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 121 LVVKMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLT 179
            VV+  P+G+M+ +   +   G+ +   GP G   Y     R   M+AGGTGI P   + 
Sbjct: 171 FVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSF-YLRDVKRPVLMLAGGTGIAPFLSML 229
Query: 180 RAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218
           + +LE    +  V L++      D++  ++LD+     P
Sbjct: 230 Q-VLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLP 267

>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVH--------LIYANVTVGDILLKDELDSFATN 216
           M+AGGTGITPM      + ++ +   N          L++   T  +IL K+EL+     
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
            P+ F++ Y +S+  +   GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233

>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
           M+AGGTGITPM      + ++ +   N          L++   T  +IL K+EL+     
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
            P+ F++ Y +S+  +   GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233

>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
           M+AGGTGITPM      + ++ +   N          L++   T  +IL K+EL+     
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
            P+ F++ Y +S+  +   GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233

>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
           M+AGGTGITPM      + ++ +   N          L++   T  +IL K+EL+     
Sbjct: 152 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
            P+ F++ Y +S+  +   GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	1e-111
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	4e-93
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	2e-88
1tvc_A	250	Methane monooxygenase component C, methane monooxy	6e-29
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	3e-26
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	2e-24
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	3e-24
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	3e-23
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	9e-22
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	9e-21
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	1e-18
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	5e-17
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	8e-17
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	2e-14
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	7e-10
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	5e-09
2gpj_A	252	Siderophore-interacting protein; structural genomi	1e-06
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	6e-06
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	2e-04
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	7e-04
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	8e-04

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score =  320 bits (822), Expect = e-111
 Identities = 101/215 (46%), Positives = 146/215 (67%), Gaps = 2/215 (0%)

Query: 44  KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEV 103
           K   +L+P  +K+F L ++  I+HNT  FRF L     ++GLP+GQH+  +    +G E+
Sbjct: 1   KREPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATV-DGKEI 59

Query: 104 IRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAF 163
            RPYTP++ D + GYF+L++K+Y KG+M+ +   ++ G++L V+GPKG+  YK    +  
Sbjct: 60  YRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEM 119

Query: 164 GMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKV 223
           GMIAGGTGITPM Q+ RAI++NPK+KT ++LI+ANV   DILL+ ELD  A    N FKV
Sbjct: 120 GMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILLRTELDDMAKKYSN-FKV 178

Query: 224 YYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           YYVL+ P   W GG+G VS +MI+ H   P+ DI+
Sbjct: 179 YYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIK 213

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score =  274 bits (703), Expect = 4e-93
 Identities = 94/241 (39%), Positives = 133/241 (55%), Gaps = 26/241 (10%)

Query: 43  KKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNE 102
             +     P+     +L  R  ISH+T +FRFALP    ILGLPVGQHI    +  +GN 
Sbjct: 5   TPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARI-DGNL 63

Query: 103 VIRPYTPITLDSDIGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRL 153
           V+RPYTPI+ D D G+ +LV+K+Y           G+M+ +   M  G+ +  +GP G L
Sbjct: 64  VVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLL 123

Query: 154 KYK----------------VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYA 197
            Y+                +   ++ GMIAGGTGITPM Q+ RAI+++P D T  HL++A
Sbjct: 124 VYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFA 183

Query: 198 NVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDI 257
           N T  DILL+ EL+        RFK++Y L +  E W+ G G V++EMI+ H P P  + 
Sbjct: 184 NQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEP 243

Query: 258 Q 258
            
Sbjct: 244 L 244

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score =  262 bits (671), Expect = 2e-88
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 24/238 (10%)

Query: 44  KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEV 103
           ++    +P      +L  +  +S +   FRF+LP    +LGLP+G+HI       EG   
Sbjct: 2   RAPALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATI-EGKLC 60

Query: 104 IRPYTPITLDSDIGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLK 154
           +R YTP ++  +IG+F+L+VK+Y           G M  +   +  G Y+ VKGP G ++
Sbjct: 61  MRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVE 120

Query: 155 Y----------KVGQARAFGMIAGGTGITPMFQLTRAILEN-PKDKTNVHLIYANVTVGD 203
           Y          K   AR   MI GG+GITPM+Q+ +A+L + P+D T +HL+YAN T  D
Sbjct: 121 YTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDD 180

Query: 204 ILLKDELDSFATNSPNRFKVYYVLSQ---PTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           ILL+DELD +A   P+R KV+YV+ Q   P E W   +G V++ +++ H P    D  
Sbjct: 181 ILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTL 238

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score =  108 bits (273), Expect = 6e-29
 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 11/195 (5%)

Query: 58  KLTKRTPISHNTAKFRFALPKSTSILG----LPVGQHILCRGKDSEGNEVIRPYTPITLD 113
           ++     +S NT +F                 P GQ +        G +V R Y+P  L 
Sbjct: 14  EVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEP-GQFMDLT---IPGTDVSRSYSPANLP 69

Query: 114 SDIGYFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGI 172
           +  G  E ++++ P+GR + +   +   G+ L VKGP G    K         +AGGTG+
Sbjct: 70  NPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMAPRYFVAGGTGL 129

Query: 173 TPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTE 232
            P+  + R + E         + +   T  ++   DEL S   +  N   V   +  P+ 
Sbjct: 130 APVVSMVRQMQEW-TAPNETRIYFGVNTEPELFYIDELKSLERSMRN-LTVKACVWHPSG 187

Query: 233 VWNGGIGHVSKEMIQ 247
            W G  G     + +
Sbjct: 188 DWEGEQGSPIDALRE 202

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score =  104 bits (261), Expect = 3e-26
 Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 10/213 (4%)

Query: 52  ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHI-LCRGKDSEGNEVIRPYTPI 110
           E  ++F++  +TP S     F        ++     GQ++ +    +   ++ IR Y+  
Sbjct: 150 EGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLT 209

Query: 111 TLDSDIGYFELVVKMYPKGRMAHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGG 169
                   + + VK    G++++      + G+ + +  P G     V       +I+ G
Sbjct: 210 RKPDG-KGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAG 268

Query: 170 TGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQ 229
            G TPM  +   + +       V+  +A          DE+     + P  F  +    Q
Sbjct: 269 VGQTPMLAMLDTLAKAGHTA-QVNWFHAAENGDVHAFADEVKELGQSLPR-FTAHTWYRQ 326

Query: 230 PTEVWNGGI-----GHVSKEMIQMHCPTPAPDI 257
           P+E           G +    ++     P    
Sbjct: 327 PSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQF 359

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score = 99.5 bits (248), Expect = 2e-24
 Identities = 40/218 (18%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 52  ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHI-LCRGKDSEGNEVIRPYTPI 110
           + ++ F + ++ P S     F         ++    GQ+  +     + G + IR Y+  
Sbjct: 152 KGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLS 211

Query: 111 TLDSDIGYFELVVK-----MYPKGRMAHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFG 164
            + +    + + VK       P G +++     ++ G+ + +  P G     V       
Sbjct: 212 DMPNG-RTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIV 270

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           +I+GG G+TPM  + +  L+ P  +  V  ++         ++D L   A    N   ++
Sbjct: 271 LISGGVGLTPMVSMLKVALQAPPRQ--VVFVHGARNSAVHAMRDRLREAAKTYEN-LDLF 327

Query: 225 YVLSQPTEVWNGGI-----GHVSKEMIQMHCPTPAPDI 257
               QP      G      G V  + I+     P  D 
Sbjct: 328 VFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADY 365

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 10/193 (5%)

Query: 58  KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIG 117
           K+T    I+    + R     + S      GQ+++    +       RP++  +   + G
Sbjct: 6   KVTSVEAITDTVYRVRIVPDAAFSFRA---GQYLMVVMDE----RDKRPFSMASTPDEKG 58

Query: 118 YFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMF 176
           + EL +        A      + +   + V  P G    +  + R   +IAGGTG +   
Sbjct: 59  FIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYAR 118

Query: 177 QLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNG 236
            +    L    ++  + + +       +    EL++ +   P   +V  V+ QP   W G
Sbjct: 119 SILLTALARNPNRD-ITIYWGGREEQHLYDLCELEALSLKHPG-LQVVPVVEQPEAGWRG 176

Query: 237 GIGHVSKEMIQMH 249
             G V   ++Q H
Sbjct: 177 RTGTVLTAVLQDH 189

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 11/204 (5%)

Query: 56  EFKLTKRTPISHNTAKFRFALPKSTSILG-LPVGQHILCRGKDSEGNEVIRPYTPITLDS 114
           E  L +   +S +T  F   L      +  L  GQ++        G    R Y+  +   
Sbjct: 110 EGTLARVENLSDSTITFDIQLDDGQPDIHFLA-GQYVNVT---LPGTTETRSYSFSSQPG 165

Query: 115 DIGYFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGIT 173
           +      VV+  P+G+M+ +   +   G+ +   GP G    +  +     M+AGGTGI 
Sbjct: 166 N-RLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYLRDVKRPVL-MLAGGTGIA 223

Query: 174 PMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEV 233
           P   + + + +   +   V L++      D++  ++LD+     P  F+   V++     
Sbjct: 224 PFLSMLQVLEQKGSEH-PVRLVFGVTQDCDLVALEQLDALQQKLPW-FEYRTVVAHAES- 280

Query: 234 WNGGIGHVSKEMIQMHCPTPAPDI 257
            +   G+V+  +          D+
Sbjct: 281 QHERKGYVTGHIEYDWLNGGEVDV 304

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 90.0 bits (224), Expect = 9e-22
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 12/198 (6%)

Query: 53  NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHI-LCRGKDSEGNEVIRPYTPIT 111
           ++   K+TK    +          P    +L    GQ   L  G + +G  V R Y+   
Sbjct: 3   DWVTGKVTKVQNWTDALFSLTVHAP----VLPFTAGQFTKL--GLEIDGERVQRAYS-YV 55

Query: 112 LDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR--LKYKVGQARAFGMIAGG 169
              D    E  +   P G+++     +  G+ + V        +  +V       M+A G
Sbjct: 56  NSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATG 115

Query: 170 TGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQ 229
           T I P   + R   +  + K  + L++A     D+     +         + ++  V+S+
Sbjct: 116 TAIGPYLSILRLGKDLDRFKN-LVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSR 174

Query: 230 PTEVWNGGIGHVSKEMIQ 247
                    G +   +  
Sbjct: 175 E-TAAGSLTGRIPALIES 191

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 88.1 bits (218), Expect = 9e-21
 Identities = 36/241 (14%), Positives = 72/241 (29%), Gaps = 48/241 (19%)

Query: 56  EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHI------------------------ 91
           E ++     +S    +F   LP+  ++     G +                         
Sbjct: 11  ECEVLSNKNVSTFIKEFVVKLPEGETMNFKS-GSYAQIKIPKYNIRYADYDIQDRFRGDW 69

Query: 92  ----LCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMY---------------PKGRMA 132
                         E +R Y+     ++     L V++                  G  +
Sbjct: 70  DKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISS 129

Query: 133 HHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNV 192
            +   +  G+ + + GP G    +   A     I GG G+ P+      +    K    V
Sbjct: 130 SYIFSLKPGDKVMMSGPYGDFHIQDTDAEML-YIGGGAGMAPLRAQILHLFRTLKTGRKV 188

Query: 193 HLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHC 250
              Y   +  +I  +++        PN FK +  LS P   + W G +G + + +   + 
Sbjct: 189 SYWYGARSKNEIFYEEDFREIEREFPN-FKFHIALSDPQPEDNWTGYVGFIHQVIYDNYL 247

Query: 251 P 251
            
Sbjct: 248 K 248

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 13/191 (6%)

Query: 54  FKEFKLTKRTPISHNTAKFRFALPKSTSILG-LPVGQHI-LCRGKDSEGNEVIRPYTPIT 111
            + F + ++   S     F        ++L   P GQ+I +    +      IR Y+ ++
Sbjct: 3   GRTFVVREKQVESAYVTSFVLVPADGGAVLDYQP-GQYIGIEVTPEGSDYREIRQYS-LS 60

Query: 112 LDSDIGYFELVVK-----MYPKGRMAHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFGM 165
             S+   + + VK         G ++H+    +  G+ + +  P G   Y   +     +
Sbjct: 61  HASNGREYRISVKREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYVERERPVV-L 119

Query: 166 IAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYY 225
           I+ G G TPM  +   + +  K    V  +YA  +  +     E            +V+Y
Sbjct: 120 ISAGVGATPMQAILHTLAKQNKSG--VTYLYACNSAKEHTFAQETAQLIAQQGWMQQVWY 177

Query: 226 VLSQPTEVWNG 236
                 +V  G
Sbjct: 178 RDESADDVLQG 188

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score = 77.1 bits (190), Expect = 5e-17
 Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 18/215 (8%)

Query: 53  NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHI-LCRGKDSEGNEVIRPYTPIT 111
           N    ++      +     F+         L    GQ + +  G + +G  ++R Y+  +
Sbjct: 2   NLYTERVLSVHHWNDTLFSFKTTRNPG---LRFKTGQFVMI--GLEVDGRPLMRAYSIAS 56

Query: 112 LDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR--LKYKVGQARAFGMIAGG 169
            + +  + E      P G +    + + EG+ L V        +   +   +   +++ G
Sbjct: 57  PNYE-EHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTG 115

Query: 170 TGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPN-------RFK 222
           TG+ P   + +      + +  V L++    V ++   D +                +  
Sbjct: 116 TGMAPFLSVIQDPETYERYE-KVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLI 174

Query: 223 VYYVLSQPTEVWNGGI-GHVSKEMIQMHCPTPAPD 256
            Y ++++      G     +    +      P  +
Sbjct: 175 YYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMN 209

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 76.8 bits (189), Expect = 8e-17
 Identities = 25/214 (11%), Positives = 65/214 (30%), Gaps = 16/214 (7%)

Query: 53  NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITL 112
            F    +      +     F     ++   L    G+  +  G + +G  + R Y+ ++ 
Sbjct: 18  KFDTATVLSVHHWTDTLFSFTCTRDQA---LRFNNGEFTMV-GLEVDGKPLTRAYSIVSP 73

Query: 113 DSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR--LKYKVGQARAFGMIAGGT 170
           + +  + E        G +    + +  G+ + +        +   +   +   M++ GT
Sbjct: 74  NYE-EHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGT 132

Query: 171 GITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPN-------RFKV 223
           G+ P   + R      +    V L +     G++   D +                +   
Sbjct: 133 GLAPFMSIIRDPDIYERFD-KVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVY 191

Query: 224 YYVLSQPTEVWNGGI-GHVSKEMIQMHCPTPAPD 256
           Y  +++      G I   ++   +      P   
Sbjct: 192 YPTVTREEFENEGRITDLIASGKLFTDLDMPPFS 225

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 19/213 (8%)

Query: 58  KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIG 117
            +T     +     FR   P++        G+ ++    D  G  ++R Y+  +   D  
Sbjct: 20  TVTSVRHWTDTLFSFRVTRPQTLRFR---SGEFVMIGLLDDNGKPIMRAYSIASPAWD-E 75

Query: 118 YFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY--KVGQARAFGMIAGGTGITPM 175
             E      P G +    + +  GE + ++           +   +    +A GTGI P 
Sbjct: 76  ELEFYSIKVPDGPLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPF 135

Query: 176 FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPN-------RFKVYYVLS 228
             L R      K    V +++A  TV ++    +L       P        + K Y   +
Sbjct: 136 ASLMREPEAYEKFD-EVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTT 194

Query: 229 QPTEVWNGGI-----GHVSKEMIQMHCPTPAPD 256
           +      G I          E + +    P  D
Sbjct: 195 REEFHHMGRITDNLASGKVFEDLGIAPMNPETD 227

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* Length = 262

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQ--HILCRGKDSEGNEVIRPYTPITL-- 112
             +  +  +++N  +          +  LP GQ  H+           ++R   PI++  
Sbjct: 8   MTVVSQREVAYNIFEMVLKGTLVDEM-DLP-GQFLHLAVPNGA----MLLR--RPISISS 59

Query: 113 -DSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR---LKYKVGQARAFGMIAG 168
            D       ++ ++  +    +   ++  G  + V GP G    +       +   +I G
Sbjct: 60  WDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKI-LIIGG 118

Query: 169 GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214
           G G+ P+++L + + +       + ++    +    +L++E  +  
Sbjct: 119 GIGVPPLYELAKQLEKTGCQ---MTILLGFASENVKILENEFSNLK 161

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 51  PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPV---GQHILCRGKDSEGNEVIRPY 107
            + F   K+  +  I+ +   F    P+      LP    G ++         N   R Y
Sbjct: 5   EDGFLRLKIASKEKIARDIWSFELTDPQGAP---LPPFEAGANLTVAV----PNGSRRTY 57

Query: 108 TPITLDSDIGYFELVVKMYPKGRMAHHFREMHE----GEYLPVKGPKGR--LKYKVGQAR 161
           +      +   + + VK    GR         +    G+ + V  P+    L     +A+
Sbjct: 58  SLCNDSQERNRYVIAVKRDSNGRGGS--ISFIDDTSEGDAVEVSLPRNEFPL---DKRAK 112

Query: 162 AFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRF 221
           +F ++AGG GITPM  + R +        +  L Y           DEL S      +  
Sbjct: 113 SFILVAGGIGITPMLSMARQLRAEG--LRSFRLYYLTRDPEGTAFFDELTSDE--WRSDV 168

Query: 222 KVYYVLSQPT 231
           K+++    PT
Sbjct: 169 KIHHDHGDPT 178

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens} Length = 252

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 14/174 (8%)

Query: 53  NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITL 112
             +E ++ + T I+ +  +                  +I      +    ++R YT    
Sbjct: 7   APRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQ 66

Query: 113 DSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGI 172
             D    + V+     G  +   +    GE + + GP  + K    +A  F +    T +
Sbjct: 67  RDDEIDVDFVLHD-TDGPASSWAKTAQVGELIQIGGPGLK-KLINFEADWFLLAGDMTAL 124

Query: 173 TPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYV 226
             +       L    +    + +        I +  E D      P   ++++V
Sbjct: 125 PAI----SVNLAKLPNNAVGYAV--------IEVLSEADIQPLVHPEHVELHWV 166

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Length = 158

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 138 MHEGEYLP-VKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIY 196
           M EG+ L  V GP G     + +      I   TGI  ++ + +A  E   D   V  ++
Sbjct: 1   MKEGDSLLNVAGPLGT-PVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIGND---VTTLH 56

Query: 197 ANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVS---KEMIQMHCPTP 253
                  ++LK+EL+        R  V  V   P + +   + +VS   KE ++    + 
Sbjct: 57  VT-FEPMVILKEELEKAV----TRHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELLESE 111

Query: 254 APDI 257
             D+
Sbjct: 112 DWDL 115

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Length = 142

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
            I   TGI  ++ + +A  E   D   V  ++       ++LK+EL+        R  V 
Sbjct: 23  AIGAYTGIVEVYPIAKAWQEIGND---VTTLHVT-FEPMVILKEELEKAV----TRHIVE 74

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQM 248
            V   P + +   + +VS+ + + 
Sbjct: 75  PVPLNPNQDFLANMKNVSQRLKEK 98

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 165 MIAGGTGITPM--------FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
           M+AGGTGITPM            RA     + K    L++   T  +IL K+EL+     
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212

Query: 217 SPNRFKVYYVLS 228
            P+ F++ Y +S
Sbjct: 213 YPDNFRLTYAIS 224

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 137 EMHEGEYLPVKGPKG--RLKYKVGQARA-FGMIAGGTGITPM---------FQLTRAILE 184
            +   + + + G  G   L     Q    F  IA GTGI+P          +        
Sbjct: 144 NLKINDDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNR 203

Query: 185 NPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLS 228
           N      + + Y       IL  +EL+ F    PN   ++YV S
Sbjct: 204 NSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFS 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	100.0
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	100.0
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	100.0
1tvc_A	250	Methane monooxygenase component C, methane monooxy	100.0
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	100.0
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	100.0
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	100.0
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	100.0
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	100.0
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	100.0
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	100.0
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	100.0
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	100.0
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	100.0
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	100.0
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	100.0
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	100.0
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	100.0
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	100.0
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	100.0
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	100.0
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	100.0
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	100.0
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.98
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.95
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.93
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.89
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.88
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.88
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.86
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.85
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.84
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.83
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.74
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.69
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.68
3s2u_A	365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	84.38

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=100.00  E-value=3.1e-40  Score=278.47  Aligned_cols=207  Identities=47%  Similarity=0.932  Sum_probs=186.3

Q ss_pred             CCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEE
Q 042788           45 SRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVK  124 (258)
Q Consensus        45 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk  124 (258)
                      .++.+++..|++++|++++.+++++.+++|+.++......|+||||+.|+++ .+|....|+|||+|.+.+.+.++|+||
T Consensus         2 ~~~~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~-~~g~~~~R~ysi~s~~~~~~~~~l~vk   80 (243)
T 2eix_A            2 REPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKAT-VDGKEIYRPYTPVSSDDEKGYFDLIIK   80 (243)
T ss_dssp             CCCSCCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEE-ETTEEEEEEECCCSCTTCCSEEEEEEE
T ss_pred             CcccCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEe-eCCCEEEeeeeecCCCCCCCEEEEEEE
Confidence            4678889999999999999999999999999887544578999999999998 556678999999999877789999999


Q ss_pred             EecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccc
Q 042788          125 MYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDI  204 (258)
Q Consensus       125 ~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~  204 (258)
                      .+++|.+|+||+++++||+|.+.||+|.|.++.+..++++||||||||||++++++++..+.....+++++|++|+.+++
T Consensus        81 ~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r~~~~~  160 (243)
T 2eix_A           81 VYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDI  160 (243)
T ss_dssp             CCTTCHHHHHHHTCCTTCEEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEEGGGC
T ss_pred             EcCCCCcchHhhcCCCCCEEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHh
Confidence            98889999999999999999999999998887655689999999999999999999998763345789999999999999


Q ss_pred             ccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788          205 LLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       205 ~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                      +|.+||+++++++++ +++++++++++++|.+..|+++++.+++.++++
T Consensus       161 ~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~  208 (243)
T 2eix_A          161 LLRTELDDMAKKYSN-FKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPP  208 (243)
T ss_dssp             TTHHHHHHHHHHCTT-EEEEEEEEECCTTCCSEESSCCHHHHHHHSCCT
T ss_pred             hHHHHHHHHHHHCCC-eEEEEEeCCCCccccCcCCccCHHHHHHhcCCC
Confidence            999999999998887 999999999888898899999988888887654

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=100.00  E-value=4.8e-39  Score=275.99  Aligned_cols=211  Identities=45%  Similarity=0.801  Sum_probs=184.7

Q ss_pred             ccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEE
Q 042788           42 IKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFEL  121 (258)
Q Consensus        42 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~  121 (258)
                      ....+..+++..|.+++|++++.+++++++++|+.++......|.||||+.|+++ .+|....|+|||+|.+.+.+.++|
T Consensus         4 ~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~~~~~~~~~l   82 (275)
T 1umk_A            4 STPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDKGFVDL   82 (275)
T ss_dssp             -CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEE-ETTEEEEEEECCSSCTTCCSEEEE
T ss_pred             cCCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEe-eCCcEEEeccccCCccCCCCeEEE
Confidence            3445678899999999999999999999999999876544578999999999987 556678999999999887789999


Q ss_pred             EEEEe---------cCCccccccccCCCCCEEEEecccceeeecC----------------CCCceEEEEEcCccHHHHH
Q 042788          122 VVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV----------------GQARAFGMIAGGTGITPMF  176 (258)
Q Consensus       122 ~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~----------------~~~~~vvliagGtGItp~~  176 (258)
                      +||.+         ++|.+|+||+++++||+|.++||+|.|.+..                ...++++||||||||||++
T Consensus        83 ~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~  162 (275)
T 1umk_A           83 VIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPML  162 (275)
T ss_dssp             EEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHH
T ss_pred             EEEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHH
Confidence            99997         6799999999999999999999999975421                1357899999999999999


Q ss_pred             HHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788          177 QLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       177 sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                      ++++++..+.....+++|+|++|+.+|++|.+||+++++++|+++++++++++++++|.+..|+++++++++.++++
T Consensus       163 ~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~~  239 (275)
T 1umk_A          163 QVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPP  239 (275)
T ss_dssp             HHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCG
T ss_pred             HHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCCC
Confidence            99999987633457899999999999999999999999988866999999999888898999999998888877653

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=100.00  E-value=4.1e-37  Score=263.19  Aligned_cols=203  Identities=40%  Similarity=0.781  Sum_probs=173.9

Q ss_pred             CCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEe---
Q 042788           50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMY---  126 (258)
Q Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~---  126 (258)
                      ++..+.+++|++++.+++++++++|+.++......++||||+.|.++ .+|....|+|||++.+.+.+.++|+||.+   
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~   86 (270)
T 2cnd_A            8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT-IEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKN   86 (270)
T ss_dssp             ---CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEE-ETTEEEEEEECCCSCTTCCSEEEEEEECCCSS
T ss_pred             CCCceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEee-eCCcEEEEeeccCCCccCCCEEEEEEEEeccC
Confidence            77888999999999999999999999887544578999999999987 55767899999999987778999999985   


Q ss_pred             ------cCCccccccccCCCCCEEEEecccce--------eeecC--CCCceEEEEEcCccHHHHHHHHHHHHhCC-CCC
Q 042788          127 ------PKGRMAHHFREMHEGEYLPVKGPKGR--------LKYKV--GQARAFGMIAGGTGITPMFQLTRAILENP-KDK  189 (258)
Q Consensus       127 ------~~G~~S~~L~~l~~Gd~v~v~gP~G~--------f~~~~--~~~~~vvliagGtGItp~~sil~~l~~~~-~~~  189 (258)
                            ++|.+|+||+++++||+|.+.||+|.        |.++.  ...++++||||||||||++++++++..+. ...
T Consensus        87 ~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~  166 (270)
T 2cnd_A           87 EHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDH  166 (270)
T ss_dssp             CBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCC
T ss_pred             cccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCCCC
Confidence                  45899999999999999999999997        44432  24589999999999999999999998752 234


Q ss_pred             CeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcC---CCCCCCCccccccHHHHhhhCCCC
Q 042788          190 TNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQ---PTEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       190 ~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~---~~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                      .+++|+|++|+.+|++|.+||+++++++|+++++++++++   ++++|.+..|+++++++++.++..
T Consensus       167 ~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~  233 (270)
T 2cnd_A          167 TEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEG  233 (270)
T ss_dssp             CEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCC
T ss_pred             cEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCC
Confidence            7899999999999999999999999998877999999987   456788889999998888877654

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=100.00  E-value=1.8e-36  Score=256.53  Aligned_cols=196  Identities=24%  Similarity=0.393  Sum_probs=171.4

Q ss_pred             CCCCCCCcEEEEEEEEEEeCCCEeEEEEEC-C-CCC-ccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEE
Q 042788           47 GSLDPENFKEFKLTKRTPISHNTAKFRFAL-P-KST-SILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVV  123 (258)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~-~-~~~-~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~V  123 (258)
                      ..+....+.+++|++++.+++++++++|+. + +.. ....|+||||+.|+++   +....|+|||++.+.+.+.++|+|
T Consensus         3 ~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~~~~~l~i~v   79 (250)
T 1tvc_A            3 ISFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIP---GTDVSRSYSPANLPNPEGRLEFLI   79 (250)
T ss_dssp             CCSCCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTT---SCSSSEEECCBCCSSSSCCEEEEE
T ss_pred             eecCCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeC---CCccccccccCCCCCCCCeEEEEE
Confidence            445556778999999999999999999998 7 531 1378999999999876   335689999999998678999999


Q ss_pred             EEecCCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCc
Q 042788          124 KMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVG  202 (258)
Q Consensus       124 k~~~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~  202 (258)
                      |.+++|.+|+||+ ++++||+|.++||+|.|.+..+..++++||||||||||++++++++..++ ...+++|+|++|+.+
T Consensus        80 k~~~~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~  158 (250)
T 1tvc_A           80 RVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGVNTEP  158 (250)
T ss_dssp             CCCTTSSSHHHHHHHSSSSSEEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEECSSST
T ss_pred             EECCCCCchHHHHhcCCCCCEEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC-CCceEEEEEEeCCHH
Confidence            9988899999995 99999999999999998876555689999999999999999999998763 346899999999999


Q ss_pred             ccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          203 DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       203 d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      +++|.+||+++++++++ +++++++++++++|.+..|++++.+.+
T Consensus       159 ~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~  202 (250)
T 1tvc_A          159 ELFYIDELKSLERSMRN-LTVKACVWHPSGDWEGEQGSPIDALRE  202 (250)
T ss_dssp             TCCCHHHHHHHHHHSSS-CEEEECCSSCSSCCSSSSSSSSHHHHH
T ss_pred             HhhhHHHHHHHHHhCCC-eEEEEEeccCCCCcCCccceehHHHHh
Confidence            99999999999988888 999999999888888899999987553

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.1e-35  Score=254.04  Aligned_cols=200  Identities=18%  Similarity=0.321  Sum_probs=170.4

Q ss_pred             CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------C
Q 042788           48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------E   99 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~   99 (258)
                      .+.+ ....++|++++.+++++++++|+.++.. .+.|+||||+.|.++..                            .
T Consensus         4 ~~~~-~~~~~~V~~~~~~t~~~~~l~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   81 (290)
T 2r6h_A            4 VFGV-KEWECEVLSNKNVSTFIKEFVVKLPEGE-TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKN   81 (290)
T ss_dssp             --CC-CEEEEEEEEEEESSSSEEEEEEECSTTC-CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEE
T ss_pred             cccc-eEEEEEEEEeeecCCCeEEEEEEcCCCC-ccccCCCceEEEEcccccccccccccchhhcccccccccccccccC
Confidence            3444 4568999999999999999999988643 35799999999998721                            2


Q ss_pred             CCeeeeeccccccCCCCCEEEEEEEE---------------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEE
Q 042788          100 GNEVIRPYTPITLDSDIGYFELVVKM---------------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFG  164 (258)
Q Consensus       100 g~~~~R~ySi~s~~~~~~~l~~~Vk~---------------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vv  164 (258)
                      +....|+|||++.+.+.+.++|+||.               ++.|.+|+||+++++||+|.+.||+|.|.++ ...++++
T Consensus        82 ~~~~~R~ySi~s~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~-~~~~~~v  160 (290)
T 2r6h_A           82 EEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQ-DTDAEML  160 (290)
T ss_dssp             CSCEEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCC-SSSCEEE
T ss_pred             CCCcceeeeccCCCCCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCC-CCCCeEE
Confidence            34678999999999877899999997               3578999999999999999999999998765 3568999


Q ss_pred             EEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCcccccc
Q 042788          165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVS  242 (258)
Q Consensus       165 liagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~  242 (258)
                      ||||||||||+++++++++.+.....+++|+|++|+.++++|.+||+++++++++ ++++++++++  +++|.+..|+++
T Consensus       161 liagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~g~v~  239 (290)
T 2r6h_A          161 YIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPN-FKFHIALSDPQPEDNWTGYVGFIH  239 (290)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTT-EEEEEEESSCCGGGCCCSCBSCHH
T ss_pred             EEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEccCCcccCCCCeeEecC
Confidence            9999999999999999888764345789999999999999999999999988888 9999999976  356888899999


Q ss_pred             HHHHhhhCC
Q 042788          243 KEMIQMHCP  251 (258)
Q Consensus       243 ~~~l~~~~~  251 (258)
                      +.++++.+.
T Consensus       240 ~~~~~~~l~  248 (290)
T 2r6h_A          240 QVIYDNYLK  248 (290)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHhHHh
Confidence            987777654

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=100.00  E-value=6.8e-36  Score=250.20  Aligned_cols=186  Identities=19%  Similarity=0.311  Sum_probs=160.7

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH  134 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~  134 (258)
                      .+++|++++.+++++++++|+.++.   ..|+||||+.|+++   + ...|+|||++.|.+++.++|.||.+++|.+|.+
T Consensus         3 ~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGq~v~l~~~---~-~~~R~ySi~s~~~~~~~l~l~i~~~~~G~~s~~   75 (232)
T 1qfj_A            3 LSCKVTSVEAITDTVYRVRIVPDAA---FSFRAGQYLMVVMD---E-RDKRPFSMASTPDEKGFIELHIGASEINLYAKA   75 (232)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEESSC---CCCCTTCEEEEESS---S-SCEEEEECCSCTTSTTCEEEEEC------CCHH
T ss_pred             eEEEEEEEEecCCCEEEEEEecCCC---CCcCCCCEEEEECC---C-CceeeeecCCCCCCCCcEEEEEEEccCCchhHH
Confidence            5789999999999999999998653   68999999999987   2 468999999999877899999999888887776


Q ss_pred             -cccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHH
Q 042788          135 -FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSF  213 (258)
Q Consensus       135 -L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l  213 (258)
                       ++++++||+|.+.||+|.|.+..+..++++||||||||||++++++++..++ ...+++++|++|+.++++|.+||+++
T Consensus        76 ~~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l  154 (232)
T 1qfj_A           76 VMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYDLCELEAL  154 (232)
T ss_dssp             HHHHHHHHSEEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTTHHHHHHH
T ss_pred             HHHhCCCCCEEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhhhHHHHHHH
Confidence             5789999999999999998876655689999999999999999999998763 44789999999999999999999999


Q ss_pred             HhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhh
Q 042788          214 ATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH  249 (258)
Q Consensus       214 ~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~  249 (258)
                      ++++++ +++++++++++++|.+..|++++.++++.
T Consensus       155 ~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~~~~~~  189 (232)
T 1qfj_A          155 SLKHPG-LQVVPVVEQPEAGWRGRTGTVLTAVLQDH  189 (232)
T ss_dssp             HHHCTT-EEEEEEESSCCTTCCSEESCHHHHHHHHC
T ss_pred             HHHCCC-eEEEEEEcCCCCCcCCceeeHHHHHHHhc
Confidence            998888 99999999998889899999998776654

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=100.00  E-value=7.2e-35  Score=246.28  Aligned_cols=187  Identities=17%  Similarity=0.224  Sum_probs=161.2

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      .|.+++|++++.+++++++++|+ ++   ...|+||||+.|+++ .+|....|+|||++.+.+ +.++|+||.+++|.+|
T Consensus         3 ~~~~~~V~~~~~~~~~~~~l~l~-~~---~~~~~pGq~v~l~~~-~~g~~~~R~ySi~s~~~~-~~l~~~v~~~~~G~~s   76 (248)
T 1fdr_A            3 DWVTGKVTKVQNWTDALFSLTVH-AP---VLPFTAGQFTKLGLE-IDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGKLS   76 (248)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEE-CC---CCCCCTTCEEEEEEC-C---CEEEEEECCSCTTC-SSEEEEEECCTTCSSH
T ss_pred             ceEEEEEEEEEEcCCCEEEEEEe-CC---CCCcCCCCcEEEEcc-CCCCeeeeeecccCCCCC-CcEEEEEEEeCCCchh
Confidence            57899999999999999999997 43   268999999999998 456678999999999876 7899999998889999


Q ss_pred             cccccCCCCCEEEEe-cccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788          133 HHFREMHEGEYLPVK-GPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL  210 (258)
Q Consensus       133 ~~L~~l~~Gd~v~v~-gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL  210 (258)
                      +||+++++||+|.+. ||+|.|.++.. ..++++||||||||||++++++++...+ ...+++|+|++|+.++++|.+||
T Consensus        77 ~~l~~l~~Gd~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el  155 (248)
T 1fdr_A           77 PRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD-RFKNLVLVHAARYAADLSYLPLM  155 (248)
T ss_dssp             HHHHTCCTTCEEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT-TCSEEEEEEEESSGGGCTTHHHH
T ss_pred             hHHHhCCCcCEEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC-CCCcEEEEEEcCCHHHhhHHHHH
Confidence            999999999999999 99999887654 2689999999999999999999987653 34789999999999999999999


Q ss_pred             HHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          211 DSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       211 ~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      +++++++|+++++++++++++. +.+..|++++.+.+
T Consensus       156 ~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~  191 (248)
T 1fdr_A          156 QELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIES  191 (248)
T ss_dssp             HHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHT
T ss_pred             HHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHh
Confidence            9999888766999999988653 33468999987654

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=4.9e-35  Score=246.50  Aligned_cols=187  Identities=18%  Similarity=0.257  Sum_probs=163.7

Q ss_pred             CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCe--eeeeccccccCCCCCEEEEEEEEe---
Q 042788           52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNE--VIRPYTPITLDSDIGYFELVVKMY---  126 (258)
Q Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~--~~R~ySi~s~~~~~~~l~~~Vk~~---  126 (258)
                      +.|++++|++++.+++++++++|+.++......|+||||+.|+++ .++..  .+|+|||++.|.+ +.++|.||.+   
T Consensus         1 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~-~~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~~~~   78 (243)
T 4eh1_A            1 RDGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVT-PEGSDYREIRQYSLSHASNG-REYRISVKREGVG   78 (243)
T ss_dssp             CCCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEEC-CSSCSSCEEEEEEBCSCCCS-SCEEEEEECTTTT
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEe-cCCCccccceeeEeccCCCC-CeEEEEEEEeecC
Confidence            368999999999999999999999887644578999999999998 44433  5799999998865 7899999998   


Q ss_pred             --cCCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcc
Q 042788          127 --PKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGD  203 (258)
Q Consensus       127 --~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d  203 (258)
                        ++|.+|+||+ ++++||+|.+.||+|.|.++ ...++++||||||||||++++++++..++. .. ++++|++|+.++
T Consensus        79 ~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-~~-v~l~~~~r~~~~  155 (243)
T 4eh1_A           79 SDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-SG-VTYLYACNSAKE  155 (243)
T ss_dssp             SSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-CS-EEEEEEESSGGG
T ss_pred             CCCCCeehhHHHhcCCCCCEEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-Ce-EEEEEEeCChhh
Confidence              7799999996 79999999999999998876 567899999999999999999999998742 23 999999999999


Q ss_pred             cccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788          204 ILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI  246 (258)
Q Consensus       204 ~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l  246 (258)
                      ++|.+||+++++++ + ++++++++++.++|. ..|+++...+
T Consensus       156 ~~~~~el~~l~~~~-~-~~~~~~~s~~~~~~~-~~g~~~~~~~  195 (243)
T 4eh1_A          156 HTFAQETAQLIAQQ-G-WMQQVWYRDESADDV-LQGEMQLAEL  195 (243)
T ss_dssp             CTTHHHHHHHHHHH-T-CEEEEEESSCCCTTC-EESSCCCTTS
T ss_pred             hhHHHHHHHHHHhC-C-eEEEEEEccCCCccc-ccCCccHHHe
Confidence            99999999998877 5 999999998776655 7889988655

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=100.00  E-value=5.9e-34  Score=256.96  Aligned_cols=194  Identities=18%  Similarity=0.274  Sum_probs=169.0

Q ss_pred             CCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC--eeeeeccccccCCCCCEEEEEEEEec
Q 042788           50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN--EVIRPYTPITLDSDIGYFELVVKMYP  127 (258)
Q Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~--~~~R~ySi~s~~~~~~~l~~~Vk~~~  127 (258)
                      .|..|++++|++++.+++++++++|+.++......|+||||+.|+++ .++.  ...|+|||++.|. ++.++|.||+++
T Consensus       150 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~  227 (403)
T 1cqx_A          150 GWKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAID-VPALGLQQIRQYSLSDMPN-GRTYRISVKREG  227 (403)
T ss_dssp             CCSSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEE-ETTTTEEEEEEEECCSCCC-SSCEEEEEECCC
T ss_pred             CCCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEe-cCCCCcceeecceecCCCC-CCeEEEEEEECC
Confidence            46788999999999999999999999876543468999999999998 3342  5789999999886 478999999986


Q ss_pred             -----CCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCC
Q 042788          128 -----KGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTV  201 (258)
Q Consensus       128 -----~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~  201 (258)
                           +|.+|+||+ ++++||+|.++||+|.|.++.+..++++||||||||||+++|++++..  ...++++++|++|+.
T Consensus       228 ~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~--~~~~~v~l~~~~r~~  305 (403)
T 1cqx_A          228 GGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--APPRQVVFVHGARNS  305 (403)
T ss_dssp             BTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC--SSCCCEEEEEEESCS
T ss_pred             CCCCCCCeehHHHhhCCCCCCEEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh--CCCCcEEEEEEeCCh
Confidence                 699999998 699999999999999998865556899999999999999999999987  234789999999999


Q ss_pred             cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCC-----CCccccccHHHHhh
Q 042788          202 GDILLKDELDSFATNSPNRFKVYYVLSQPTEVW-----NGGIGHVSKEMIQM  248 (258)
Q Consensus       202 ~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~-----~~~~G~i~~~~l~~  248 (258)
                      ++++|.+||+++++++|+ ++++++++++.+.|     .+..|+++.+.+++
T Consensus       306 ~~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~  356 (403)
T 1cqx_A          306 AVHAMRDRLREAAKTYEN-LDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEK  356 (403)
T ss_dssp             SSCHHHHHHHHHHHHCTT-EEEEEEESSCCTTCCBTTTBSEESSCCGGGSHH
T ss_pred             hhCcHHHHHHHHHHhCCC-cEEEEEECCCCcccccccccCcCCCcCHHHHhh
Confidence            999999999999999998 99999999876655     34679999876665

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=100.00  E-value=6.3e-35  Score=262.75  Aligned_cols=195  Identities=19%  Similarity=0.265  Sum_probs=170.2

Q ss_pred             CCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC--eeeeeccccccCCCCCEEEEEEEEec
Q 042788           50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN--EVIRPYTPITLDSDIGYFELVVKMYP  127 (258)
Q Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~--~~~R~ySi~s~~~~~~~l~~~Vk~~~  127 (258)
                      .|..|++++|++++.+++++++++|+.++......|+||||+.|+++ .++.  ..+|+|||++.|. ++.++|.||+++
T Consensus       148 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~  225 (396)
T 1gvh_A          148 GWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLK-PEGFPHQEIRQYSLTRKPD-GKGYRIAVKREE  225 (396)
T ss_dssp             CCSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEC-CTTCSSCEEEEEECCSCCC-SSCEEEEEECCT
T ss_pred             CCCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEec-CCCCccceeecceeccCCC-CCeEEEEEEEcC
Confidence            35788999999999999999999999887543468999999999998 5452  5789999999987 478999999988


Q ss_pred             CCcccccccc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccccc
Q 042788          128 KGRMAHHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILL  206 (258)
Q Consensus       128 ~G~~S~~L~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~  206 (258)
                      +|.+|+||++ +++||+|.++||+|.|.++.+..++++||||||||||+++|++++..++ ..++++++|++|+.++++|
T Consensus       226 ~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~-~~~~v~l~~~~r~~~~~~~  304 (396)
T 1gvh_A          226 GGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG-HTAQVNWFHAAENGDVHAF  304 (396)
T ss_dssp             TCHHHHHHHHTCCTTCEEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCTTTCCS
T ss_pred             CCcchHHHHhcCCCCCEEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhh
Confidence            8999999985 9999999999999999886555689999999999999999999998763 4578999999999999999


Q ss_pred             HHHHHHHHhhCCCCeEEEEEEcCCCCCC-----CCccccccHHHHhh
Q 042788          207 KDELDSFATNSPNRFKVYYVLSQPTEVW-----NGGIGHVSKEMIQM  248 (258)
Q Consensus       207 ~~eL~~l~~~~~~~~~v~~~~s~~~~~~-----~~~~G~i~~~~l~~  248 (258)
                      .+||+++++++|+ ++++++++++.+.|     .+..|+++.+.+++
T Consensus       305 ~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~  350 (396)
T 1gvh_A          305 ADEVKELGQSLPR-FTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEG  350 (396)
T ss_dssp             HHHHHHHHHTSSS-EEEEEEESSCCHHHHHHTCCSEESSCCGGGSSS
T ss_pred             HHHHHHHHHHCCC-eEEEEEECCCCccccccCccCccCcCCHHHHhh
Confidence            9999999999998 99999999876433     45679999876665

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=100.00  E-value=1.8e-34  Score=251.92  Aligned_cols=197  Identities=17%  Similarity=0.216  Sum_probs=162.2

Q ss_pred             CCCCCCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecCC----CC-eeeeeccccccCCC-
Q 042788           47 GSLDPENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDSE----GN-EVIRPYTPITLDSD-  115 (258)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~----g~-~~~R~ySi~s~~~~-  115 (258)
                      ....+.....++|++++.++     +++++++|+.+..   +.|+||||+.|+++...    |. ..+|+|||+|.|.+ 
T Consensus        21 ~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~   97 (311)
T 3lo8_A           21 NTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD   97 (311)
T ss_dssp             CSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS---SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred             cccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC---CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence            34556778899999999999     9999999998864   78999999999988321    22 36899999999854 


Q ss_pred             ---CCEEEEEEEEe-------------cCCccccccccCCCCCEEEEecccceeeecC--CCCceEEEEEcCccHHHHHH
Q 042788          116 ---IGYFELVVKMY-------------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV--GQARAFGMIAGGTGITPMFQ  177 (258)
Q Consensus       116 ---~~~l~~~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--~~~~~vvliagGtGItp~~s  177 (258)
                         .+.++|+||.+             ++|.+|+||+++++||+|.+.||+|.|...+  +..++++||||||||||+++
T Consensus        98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s  177 (311)
T 3lo8_A           98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRG  177 (311)
T ss_dssp             TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHH
T ss_pred             CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHH
Confidence               47999999986             6799999999999999999999999976544  35689999999999999999


Q ss_pred             HHHHHHhCCCC----CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788          178 LTRAILENPKD----KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI  246 (258)
Q Consensus       178 il~~l~~~~~~----~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l  246 (258)
                      +++++..++.+    ..+++|+|++|+.++++|.+||+++++++++++++++++++++++|.+..|++++.+.
T Consensus       178 ~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~  250 (311)
T 3lo8_A          178 YLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIE  250 (311)
T ss_dssp             HHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHH
T ss_pred             HHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHH
Confidence            99999875321    2589999999999999999999999999885599999999998888888888877543

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=100.00  E-value=2.6e-34  Score=250.89  Aligned_cols=196  Identities=20%  Similarity=0.272  Sum_probs=166.4

Q ss_pred             CCCCCCcEEEEEEEEEEeCCC-----EeEEEEECCCCCccCCCCCCcEEEEEEecC--CCCe-eeeeccccccCC----C
Q 042788           48 SLDPENFKEFKLTKRTPISHN-----TAKFRFALPKSTSILGLPVGQHILCRGKDS--EGNE-VIRPYTPITLDS----D  115 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~~-~~R~ySi~s~~~----~  115 (258)
                      ...+.....++|++++.++++     +++++|+.+..   +.|.||||+.|+++..  +|.. .+|+|||+|.|.    +
T Consensus        27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~  103 (310)
T 3vo2_A           27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE---IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGD  103 (310)
T ss_dssp             SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTS
T ss_pred             eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCC---CcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCC
Confidence            344556679999999999998     99999997653   6799999999998721  2333 589999999985    4


Q ss_pred             CCEEEEEEEEec---------CCccccccccCCCCCEEEEecccceeee-cCCCCceEEEEEcCccHHHHHHHHHHHHhC
Q 042788          116 IGYFELVVKMYP---------KGRMAHHFREMHEGEYLPVKGPKGRLKY-KVGQARAFGMIAGGTGITPMFQLTRAILEN  185 (258)
Q Consensus       116 ~~~l~~~Vk~~~---------~G~~S~~L~~l~~Gd~v~v~gP~G~f~~-~~~~~~~vvliagGtGItp~~sil~~l~~~  185 (258)
                      ++.++|+||+++         +|.+|+||+++++||+|.+.||+|.|.. +.+..++++||||||||||++++++++..+
T Consensus       104 ~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~  183 (310)
T 3vo2_A          104 SKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLE  183 (310)
T ss_dssp             SSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSS
T ss_pred             CCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHh
Confidence            689999999863         6999999999999999999999999553 434568999999999999999999999865


Q ss_pred             CCC----CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788          186 PKD----KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI  246 (258)
Q Consensus       186 ~~~----~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l  246 (258)
                      ...    ..+++|+|++|+.++++|.+||+++++++|+++++++++|+++++|.+..|++++.+.
T Consensus       184 ~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~  248 (310)
T 3vo2_A          184 EHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMA  248 (310)
T ss_dssp             CCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHH
T ss_pred             hcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHH
Confidence            322    2689999999999999999999999999985599999999998888888888887544

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=100.00  E-value=3.1e-33  Score=251.99  Aligned_cols=191  Identities=15%  Similarity=0.284  Sum_probs=168.0

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccC----CCCCCcEEEEEEecCC--C--CeeeeeccccccCCCCCEEEEE
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSIL----GLPVGQHILCRGKDSE--G--NEVIRPYTPITLDSDIGYFELV  122 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~----~~~pGQ~v~l~~~~~~--g--~~~~R~ySi~s~~~~~~~l~~~  122 (258)
                      +..|++++|++++.+++++++++|+.++.....    .|+||||+.|+++ .+  +  ...+|+|||++.|.+ +.++|.
T Consensus       146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~-~~~~~~~~~~~R~ySi~s~p~~-~~~~i~  223 (399)
T 4g1v_A          146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTH-PIRQENQYDALRHYSLCSASTK-NGLRFA  223 (399)
T ss_dssp             SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEEC-CCSTTCCSCEEEEEEBSCSCCT-TCEEEE
T ss_pred             CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEe-CCCCCCccceeeeecccCCCCC-CeEEEE
Confidence            778999999999999999999999988754333    8999999999986 33  3  257899999999865 789999


Q ss_pred             EEEe------cCCccccccc-cCCCCCEEEEecccceeeecCC----CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCe
Q 042788          123 VKMY------PKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVG----QARAFGMIAGGTGITPMFQLTRAILENPKDKTN  191 (258)
Q Consensus       123 Vk~~------~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~----~~~~vvliagGtGItp~~sil~~l~~~~~~~~~  191 (258)
                      ||++      ++|.+|+||+ ++++||+|.++||+|.|.++.+    ..++++||||||||||+++|++++..++ ..++
T Consensus       224 Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~-~~~~  302 (399)
T 4g1v_A          224 VKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN-PNRP  302 (399)
T ss_dssp             EECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC-TTSC
T ss_pred             EEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC-CCCC
Confidence            9994      6899999996 9999999999999999988765    5789999999999999999999998864 3478


Q ss_pred             EEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          192 VHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       192 v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      ++++|++|+.++++|.++|+++++++|+ ++++++++++.       |+++.+.+.+.+++
T Consensus       303 v~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~-------g~~~~~~l~~~~~~  355 (399)
T 4g1v_A          303 IYWIQSSYDEKTQAFKKHVDELLAECAN-VDKIIVHTDTE-------PLINAAFLKEKSPA  355 (399)
T ss_dssp             EEEEEEESSSTTSTTHHHHHHHHTTCSS-EEEEEEETTTS-------CCCCHHHHHHHSCS
T ss_pred             EEEEEecCCHHHhhhHHHHHHHHHhCCC-cEEEEEEeCCC-------CcccHHHHHhhCCC
Confidence            9999999999999999999999999998 99999998753       79998888877764

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=3.3e-34  Score=252.92  Aligned_cols=192  Identities=20%  Similarity=0.307  Sum_probs=166.8

Q ss_pred             CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcc
Q 042788           52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRM  131 (258)
Q Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~  131 (258)
                      ..+.+++|++++.+++++++++|+.++......|.||||+.|+++   +...+|+|||++.|. .+.++|+||.+++|.+
T Consensus       106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~-~~~l~~~vk~~~~G~~  181 (338)
T 1krh_A          106 IHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLP---GTTETRSYSFSSQPG-NRLTGFVVRNVPQGKM  181 (338)
T ss_dssp             CEEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECT---TSSCEEEEECCSCTT-CSEEEEEEECCTTCHH
T ss_pred             ceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcC---CCCccccccccCCCC-CCeEEEEEEEcCCCCc
Confidence            356789999999999999999999887422478999999999977   334689999999987 6899999999888999


Q ss_pred             cccc-ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788          132 AHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL  210 (258)
Q Consensus       132 S~~L-~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL  210 (258)
                      |+|| .++++||+|.++||+|.|.++.+. ++++||||||||||++++++++..++ ...+++|+|++|+.+|++|.+||
T Consensus       182 S~~L~~~l~~Gd~v~v~gP~G~f~~~~~~-~~~vliagGtGiaP~~s~l~~l~~~~-~~~~v~l~~~~r~~~d~~~~~el  259 (338)
T 1krh_A          182 SEYLSVQAKAGDKMSFTGPFGSFYLRDVK-RPVLMLAGGTGIAPFLSMLQVLEQKG-SEHPVRLVFGVTQDCDLVALEQL  259 (338)
T ss_dssp             HHHHHTTCCTTCEEEEEEEECSCSCCCCS-SCEEEEEEGGGHHHHHHHHHHHHHHC-CSSCEEEEEEESSGGGCCCHHHH
T ss_pred             hhhHhhccCCCCEEEEECCccceEeCCCC-ceEEEEEccccHhHHHHHHHHHHHcC-CCCeEEEEEEeCCHHHhhhHHHH
Confidence            9999 589999999999999998876553 89999999999999999999998864 34689999999999999999999


Q ss_pred             HHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCC
Q 042788          211 DSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP  251 (258)
Q Consensus       211 ~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~  251 (258)
                      +++++++++ ++++++++++++.|. ..|++++.+.++.++
T Consensus       260 ~~l~~~~~~-~~~~~~~s~~~~~~~-~~g~v~~~l~~~~~~  298 (338)
T 1krh_A          260 DALQQKLPW-FEYRTVVAHAESQHE-RKGYVTGHIEYDWLN  298 (338)
T ss_dssp             HHHHHHCTT-EEEEEEETTCCSSSS-EESCSGGGCCGGGGG
T ss_pred             HHHHHhCCC-eEEEEEEecCCCCCC-ccCccCHHHHHhhcc
Confidence            999998888 999999998877665 689998865544443

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=100.00  E-value=9.3e-34  Score=247.97  Aligned_cols=193  Identities=16%  Similarity=0.225  Sum_probs=162.8

Q ss_pred             CCCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecC--------------------------
Q 042788           50 DPENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDS--------------------------   98 (258)
Q Consensus        50 ~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--------------------------   98 (258)
                      .+.....++|++++.++     ++++.++|+.+..   +.|.||||+.|..|..                          
T Consensus        11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~   87 (316)
T 3jqq_A           11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGL---FKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHN   87 (316)
T ss_dssp             CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTC---CCCCTTCEEEECTTCC--------------------------
T ss_pred             cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCC---cceecCcEeEEECCCccccccccccccccccccccccccccc
Confidence            34555689999999998     8999999998654   8999999999976521                          


Q ss_pred             -------CCCeeeeeccccccCCCCCEEEEEEEEe------------cCCccccccccCCCCCEEEEecccceeeecCC-
Q 042788           99 -------EGNEVIRPYTPITLDSDIGYFELVVKMY------------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVG-  158 (258)
Q Consensus        99 -------~g~~~~R~ySi~s~~~~~~~l~~~Vk~~------------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~-  158 (258)
                             +|...+|+|||+|.|.+ +.++|+||+.            ++|.+|+||+++++||+|.++||+|.|.++.+ 
T Consensus        88 ~~~~~~~~g~~~~R~ySIaS~p~~-~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~l~~~~  166 (316)
T 3jqq_A           88 NIALSHIKKQRCARLYSISSSNNM-ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDA  166 (316)
T ss_dssp             ---------CCCCEEEEBCSCTTS-SSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCCCCTTH
T ss_pred             ccccccCCCcccceeeecccCCCC-CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceEcCCcc
Confidence                   13457999999999876 7899999974            56999999999999999999999999988755 


Q ss_pred             --CCceEEEEEcCccHHHHHHHHHHHHhCCC---------CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEE
Q 042788          159 --QARAFGMIAGGTGITPMFQLTRAILENPK---------DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVL  227 (258)
Q Consensus       159 --~~~~vvliagGtGItp~~sil~~l~~~~~---------~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~  227 (258)
                        ..+++|||||||||||+++|++++...+.         ...+++|+|++|+.++++|.+||+++++++|+++++++++
T Consensus       167 ~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~~~~~~  246 (316)
T 3jqq_A          167 IQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVF  246 (316)
T ss_dssp             HHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred             cCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCCCcEEEEEEE
Confidence              26899999999999999999999987631         2468999999999999999999999999988559999999


Q ss_pred             cCCCCCCCCccccccHHHHh
Q 042788          228 SQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       228 s~~~~~~~~~~G~i~~~~l~  247 (258)
                      +++ ++|.+..|++++.+.+
T Consensus       247 s~~-~~~~g~~g~V~~~l~~  265 (316)
T 3jqq_A          247 SYK-QNSDATSFYVQDEIYK  265 (316)
T ss_dssp             GGG-CC---CBCCHHHHHHH
T ss_pred             CCC-cccCCCccchhHHHHH
Confidence            987 5677889999887654

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=100.00  E-value=3.4e-33  Score=239.40  Aligned_cols=186  Identities=19%  Similarity=0.296  Sum_probs=160.3

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      +.+++|++++.+++++++++|+.++.   ..|+||||+.|+++..+|....|+|||++.+.+ +.++|+|+.+++|.+|+
T Consensus        16 ~~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G~~s~   91 (272)
T 2bgi_A           16 PDAQTVTSVRHWTDTLFSFRVTRPQT---LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKVPDGPLTS   91 (272)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECCTTCTTHH
T ss_pred             eEEEEEEEEEEcCCCEEEEEEeCCCC---CccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEccCCCchh
Confidence            36799999999999999999998764   679999999999984356678999999999876 89999999988899999


Q ss_pred             ccccCCCCCEEEEe-cccceeeecCCC-CceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788          134 HFREMHEGEYLPVK-GPKGRLKYKVGQ-ARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD  211 (258)
Q Consensus       134 ~L~~l~~Gd~v~v~-gP~G~f~~~~~~-~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~  211 (258)
                      ||+++++||+|.++ ||+|.|.++... .++++||||||||||++++++++...+ ...+++|+|++|+.++++|.+||+
T Consensus        92 ~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el~  170 (272)
T 2bgi_A           92 RLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE-KFDEVIMMHACRTVAELEYGRQLV  170 (272)
T ss_dssp             HHTTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT-SCSEEEEEEEESSSGGGHHHHHHH
T ss_pred             HHHhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhHHHHHH
Confidence            99999999999999 999998876543 589999999999999999999987652 347899999999999999999999


Q ss_pred             -HHHh-----hC-CCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          212 -SFAT-----NS-PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       212 -~l~~-----~~-~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                       ++++     ++ +.++++++++++++   .+..|++++.+.+
T Consensus       171 ~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~  210 (272)
T 2bgi_A          171 EALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLAS  210 (272)
T ss_dssp             HHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHS
T ss_pred             HHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHh
Confidence             9987     55 33399999998863   2457899887554

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=100.00  E-value=4.2e-33  Score=243.53  Aligned_cols=196  Identities=18%  Similarity=0.252  Sum_probs=165.1

Q ss_pred             CCCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEecC--CCC-eeeeeccccccCC----C
Q 042788           48 SLDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKDS--EGN-EVIRPYTPITLDS----D  115 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~-~~~R~ySi~s~~~----~  115 (258)
                      ...+..+..++|++++.+++     ++++++|+.+..   ..|+||||+.|.+++.  +|. ..+|+|||+|.+.    +
T Consensus        31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~  107 (314)
T 1fnb_A           31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGD  107 (314)
T ss_dssp             SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred             ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC---CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence            34456677899999999998     899999998764   6899999999997731  132 3689999999985    3


Q ss_pred             CCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceee-ecCCCCceEEEEEcCccHHHHHHHHHHHHhC
Q 042788          116 IGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLK-YKVGQARAFGMIAGGTGITPMFQLTRAILEN  185 (258)
Q Consensus       116 ~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~~~~~~~vvliagGtGItp~~sil~~l~~~  185 (258)
                      .+.++|+||..         +.|.+|+||+++++||+|.+.||+|.|. .+.+..++++||||||||||++++++++...
T Consensus       108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~  187 (314)
T 1fnb_A          108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFE  187 (314)
T ss_dssp             SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTC
T ss_pred             CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHh
Confidence            58999999974         5699999999999999999999999964 4434468999999999999999999999875


Q ss_pred             CC----CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788          186 PK----DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI  246 (258)
Q Consensus       186 ~~----~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l  246 (258)
                      +.    ...+++|+|++|+.+|++|.+||+++++++++++++++++|+++++|.+..|++++.+.
T Consensus       188 ~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~  252 (314)
T 1fnb_A          188 KHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMA  252 (314)
T ss_dssp             CBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHH
T ss_pred             ccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHH
Confidence            31    13689999999999999999999999998885599999999988888888888887543

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=100.00  E-value=1.3e-33  Score=240.05  Aligned_cols=185  Identities=16%  Similarity=0.254  Sum_probs=159.4

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      .|++++|++++.+++++++++|+.++.   ..|+||||+.|+++ .+|....|+|||++.+.+ +.++|+|+.+++|.+|
T Consensus         2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGq~v~l~~~-~~g~~~~R~ySi~s~~~~-~~~~~~i~~~~~G~~s   76 (257)
T 2qdx_A            2 NLYTERVLSVHHWNDTLFSFKTTRNPG---LRFKTGQFVMIGLE-VDGRPLMRAYSIASPNYE-EHLEFFSIKVPDGPLT   76 (257)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEE-ETTEEEEEEEECCSCTTS-SEEEEEEECCTTCTTH
T ss_pred             ceEEEEEEEEEEcCCCeEEEEEeCCCC---CccCCCCEEEEEec-CCCCceeeeeEeecCCCC-CeEEEEEEEeCCCcch
Confidence            578999999999999999999998764   67999999999998 456678999999999876 8999999998889999


Q ss_pred             cccccCCCCCEEEEe-cccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788          133 HHFREMHEGEYLPVK-GPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL  210 (258)
Q Consensus       133 ~~L~~l~~Gd~v~v~-gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL  210 (258)
                      +||+++++||+|.+. ||+|.|.++.. ..++++||||||||||++++++++...+ ...+++++|++|+.++++|.+||
T Consensus        77 ~~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el  155 (257)
T 2qdx_A           77 SRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE-RYEKVILVHGVRWVSELAYADFI  155 (257)
T ss_dssp             HHHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH-HCSEEEEEEEESSGGGCTTHHHH
T ss_pred             hHHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC-CCCeEEEEEEcCCHHHhHhHHHH
Confidence            999999999999999 99999887644 2589999999999999999999887542 23689999999999999999999


Q ss_pred             H-HHHh-----hC--CCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          211 D-SFAT-----NS--PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       211 ~-~l~~-----~~--~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      + ++++     ++  ++ +++++++++++.   +..|++++.+.+
T Consensus       156 ~~~l~~~~~~~~~~~~~-~~~~~~~s~~~~---~~~g~v~~~l~~  196 (257)
T 2qdx_A          156 TKVLPEHEYFGDQVKEK-LIYYPLVTREPF---RNQGRQTDLMRS  196 (257)
T ss_dssp             HTTGGGCTTTHHHHHHH-EEEEEEESSSCC---SSBSCHHHHHHH
T ss_pred             HHHHHhchhhhccCCCc-EEEEEEecCCCc---ccCceechhhhh
Confidence            9 8876     33  34 999999988633   357899886554

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=100.00  E-value=3.3e-34  Score=245.45  Aligned_cols=188  Identities=13%  Similarity=0.213  Sum_probs=157.8

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR  130 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~  130 (258)
                      .+.|.+++|++++.+++++++++|+.++.   ..|+||||+.++++ .+|...+|+|||++.+.+ +.++|+|+.+++|.
T Consensus        16 ~~~~~~~~V~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~-~~~~~~v~~~~~G~   90 (271)
T 4fk8_A           16 MSKFDTATVLSVHHWTDTLFSFTCTRDQA---LRFNNGEFTMVGLE-VDGKPLTRAYSIVSPNYE-EHLEFFSIKVQNGP   90 (271)
T ss_dssp             --CEEEEEEEEEEEEETTEEEEEECCCTT---CCCCTTCEEEEEEE-ETTEEEEEEEECCSCTTS-SSEEEEEECCTTCT
T ss_pred             cccceeEEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCEEEEEcc-CCCceeeeeEeccCCCCC-CcEEEEEEEECCCc
Confidence            35789999999999999999999998764   78999999999998 566778999999998865 67999999988899


Q ss_pred             cccccccCCCCCEEEEe-cccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHH
Q 042788          131 MAHHFREMHEGEYLPVK-GPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKD  208 (258)
Q Consensus       131 ~S~~L~~l~~Gd~v~v~-gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~  208 (258)
                      +|+||+++++||+|.++ ||+|.|.++. ...++++||||||||||++++++++...+ ...+++++|++|+.++++|.+
T Consensus        91 ~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~  169 (271)
T 4fk8_A           91 LTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE-RFDKVVLTHTCRLKGELAYMD  169 (271)
T ss_dssp             THHHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH-HCSEEEEEECCCSHHHHHHHH
T ss_pred             hhhHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhHHH
Confidence            99999999999999999 9999988764 35689999999999999999999987642 346899999999999999999


Q ss_pred             HHHHHHhhCCC-------CeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          209 ELDSFATNSPN-------RFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       209 eL~~l~~~~~~-------~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      ||+++++++|+       +++++.+++++..   +..|++++.+.+
T Consensus       170 el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~  212 (271)
T 4fk8_A          170 YIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIAS  212 (271)
T ss_dssp             HHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHH
T ss_pred             HHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhc
Confidence            99999888772       3888888877654   457899886654

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=100.00  E-value=2.1e-32  Score=246.71  Aligned_cols=196  Identities=20%  Similarity=0.303  Sum_probs=165.1

Q ss_pred             CCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEec--CCCC-eeeeeccccccCCC----C
Q 042788           49 LDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKD--SEGN-EVIRPYTPITLDSD----I  116 (258)
Q Consensus        49 ~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~g~-~~~R~ySi~s~~~~----~  116 (258)
                      +.+..+..++|++++.+++     ++++++|+.++.  ...|+||||+.|+++.  .+|. ..+|+|||++.|.+    +
T Consensus       117 ~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~  194 (402)
T 2b5o_A          117 YRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG--DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDN  194 (402)
T ss_dssp             SCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS--CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSS
T ss_pred             ccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC--CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCC
Confidence            4445567899999999999     999999998764  3789999999998762  1232 36899999999863    5


Q ss_pred             CEEEEEEEEe----------cCCccccccccCCCC-CEEEEeccccee-eecCCCCceEEEEEcCccHHHHHHHHHHHHh
Q 042788          117 GYFELVVKMY----------PKGRMAHHFREMHEG-EYLPVKGPKGRL-KYKVGQARAFGMIAGGTGITPMFQLTRAILE  184 (258)
Q Consensus       117 ~~l~~~Vk~~----------~~G~~S~~L~~l~~G-d~v~v~gP~G~f-~~~~~~~~~vvliagGtGItp~~sil~~l~~  184 (258)
                      +.++|+||..          +.|.+|+||+++++| |+|.+.||+|.| .++.+..++++||||||||||++++++++..
T Consensus       195 ~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~  274 (402)
T 2b5o_A          195 KTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFK  274 (402)
T ss_dssp             CEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHT
T ss_pred             CEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHH
Confidence            8999999983          468999999999999 999999999995 4444456899999999999999999999987


Q ss_pred             CCCC----CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788          185 NPKD----KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI  246 (258)
Q Consensus       185 ~~~~----~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l  246 (258)
                      ++.+    ..+++|+|++|+.+|++|.+||+++++++|+++++++++++++++|.+..|++++.+.
T Consensus       275 ~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~  340 (402)
T 2b5o_A          275 EQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVS  340 (402)
T ss_dssp             CCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHH
T ss_pred             hccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHH
Confidence            6421    3689999999999999999999999999884599999999988888888888876543

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=100.00  E-value=7.3e-33  Score=236.12  Aligned_cols=182  Identities=13%  Similarity=0.173  Sum_probs=154.7

Q ss_pred             EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788           56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF  135 (258)
Q Consensus        56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L  135 (258)
                      +++|++++.+++++++++|+.++.  ...|+||||+.|+++ ..+....|+|||++.|.+++.++|+||.++.|.+|+||
T Consensus         7 ~~~V~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~-~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~S~~l   83 (262)
T 1ep3_B            7 MMTVVSQREVAYNIFEMVLKGTLV--DEMDLPGQFLHLAVP-NGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKL   83 (262)
T ss_dssp             EEEEEEEEEEETTEEEEEEESGGG--GGCCSTTCEEEECCS-CTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHH
T ss_pred             ceEEEEEEEecCCEEEEEEEcCcc--cccCCCCceEEEEcC-CCCceeeEEEEeeeecCCCCEEEEEEEEecCCchHHHH
Confidence            799999999999999999998763  468999999999987 44456789999999987778999999999899999999


Q ss_pred             ccCCCCCEEEEecccce-eeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHH
Q 042788          136 REMHEGEYLPVKGPKGR-LKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSF  213 (258)
Q Consensus       136 ~~l~~Gd~v~v~gP~G~-f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l  213 (258)
                      +++++||+|.+.||+|+ |.++.+ ..++++||||||||||++++++++..++   .+++|+|++|+.+|++|.+||+++
T Consensus        84 ~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r~~~~~~~~~el~~l  160 (262)
T 1ep3_B           84 SKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKILENEFSNL  160 (262)
T ss_dssp             HTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCCHHHHHTS
T ss_pred             hcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHhhh
Confidence            99999999999999999 887654 3689999999999999999999998763   689999999999999999999987


Q ss_pred             HhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788          214 ATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       214 ~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~  252 (258)
                      +..     +++++ +  +++|.+..|++++ .+++.+++
T Consensus       161 ~~~-----~~~~~-~--~~~~~~~~g~v~~-~l~~~~~~  190 (262)
T 1ep3_B          161 KNV-----TLKIA-T--DDGSYGTKGHVGM-LMNEIDFE  190 (262)
T ss_dssp             TTE-----EEEEE-E--TTCSSSEESCHHH-HHHHCCSC
T ss_pred             ccC-----cEEEE-E--CCCCCcceeehHH-HHHhhccC
Confidence            532     23333 2  2446677899998 56665543

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=100.00  E-value=3.9e-32  Score=236.29  Aligned_cols=195  Identities=23%  Similarity=0.314  Sum_probs=160.7

Q ss_pred             CCCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEecC--CCC-eeeeeccccccCC----C
Q 042788           48 SLDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKDS--EGN-EVIRPYTPITLDS----D  115 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~-~~~R~ySi~s~~~----~  115 (258)
                      ...+.....++|++++.+++     ++++++|+.+..  .+.|+||||+.|.+++.  +|. ..+|+|||+|.|.    +
T Consensus        15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~   92 (304)
T 2bmw_A           15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG--NLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVD   92 (304)
T ss_dssp             SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS--CCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTS
T ss_pred             ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC--ccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCC
Confidence            33445566899999999999     899999998764  26899999999987632  133 3679999999885    3


Q ss_pred             CCEEEEEEEEe----------cCCccccccccCCCCCEEEEecccceee-ecCCCCceEEEEEcCccHHHHHHHHHHHHh
Q 042788          116 IGYFELVVKMY----------PKGRMAHHFREMHEGEYLPVKGPKGRLK-YKVGQARAFGMIAGGTGITPMFQLTRAILE  184 (258)
Q Consensus       116 ~~~l~~~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~~~~~~~vvliagGtGItp~~sil~~l~~  184 (258)
                      .+.++|+||..          ..|.+|+||+++++||+|.+.||+|.+. .+.+..++++||||||||||++++++++..
T Consensus        93 ~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~  172 (304)
T 2bmw_A           93 DKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFK  172 (304)
T ss_dssp             SSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHC
T ss_pred             CCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHH
Confidence            58999999972          3688999999999999999999999954 444456899999999999999999999875


Q ss_pred             CCC--------CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          185 NPK--------DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       185 ~~~--------~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      +..        ...+++|+|++|+.+|++|.+||+++++++|+++++++++|+++++|.+..++++..
T Consensus       173 ~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~  240 (304)
T 2bmw_A          173 DAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDR  240 (304)
T ss_dssp             HHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHH
T ss_pred             hhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHH
Confidence            420        135799999999999999999999999988845999999999877777767777654

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=100.00  E-value=2.6e-32  Score=238.49  Aligned_cols=194  Identities=19%  Similarity=0.284  Sum_probs=160.4

Q ss_pred             CCCCCcEEEEEEEEEEeCCC--------------EeEEEEECCCCCccCCCCCCcEEEEEEecCC--CC--------eee
Q 042788           49 LDPENFKEFKLTKRTPISHN--------------TAKFRFALPKSTSILGLPVGQHILCRGKDSE--GN--------EVI  104 (258)
Q Consensus        49 ~~~~~~~~~~v~~~~~~~~~--------------~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--g~--------~~~  104 (258)
                      ..+.....++|++++.++++              +++++|+.+..  ...|+||||+.|.+++..  +.        ..+
T Consensus        16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~   93 (314)
T 2rc5_A           16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS--AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTV   93 (314)
T ss_dssp             BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT--TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCC
T ss_pred             CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC--cCcccCCCEEEEECCCCccccCccchhhcCCCc
Confidence            33445678999999999998              99999998764  368999999999877211  21        267


Q ss_pred             eeccccccCC----CCCEEEEEEEEe----------cCCccccccccCCCCCEEEEecccceeeecC--CCCceEEEEEc
Q 042788          105 RPYTPITLDS----DIGYFELVVKMY----------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV--GQARAFGMIAG  168 (258)
Q Consensus       105 R~ySi~s~~~----~~~~l~~~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--~~~~~vvliag  168 (258)
                      |+|||+|.|.    +.+.++|+||.+          ++|.+|+||+++++||+|.+.||+|.|...+  +..+++|||||
T Consensus        94 R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIag  173 (314)
T 2rc5_A           94 RLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLAT  173 (314)
T ss_dssp             EEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSSCBCSCEEEEEE
T ss_pred             eeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCCCCCCCEEEEEC
Confidence            9999999985    468999999986          3688999998899999999999999965433  34689999999


Q ss_pred             CccHHHHHHHHHHHHhCCC--CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCC-CCccccccHHH
Q 042788          169 GTGITPMFQLTRAILENPK--DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVW-NGGIGHVSKEM  245 (258)
Q Consensus       169 GtGItp~~sil~~l~~~~~--~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~-~~~~G~i~~~~  245 (258)
                      ||||||++++++++..++.  ...+++|+|++|+.++++|.+||+++++++++ +++++++|+++++| .+..|++++.+
T Consensus       174 GtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~g~~~~v~~~l  252 (314)
T 2rc5_A          174 GTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKN-FKLITAISREEKNSFDGGRMYISHRV  252 (314)
T ss_dssp             GGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSS-EEEEEEETTTCBCTTTSSBCCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCc-EEEEEEECCCCCcccCCCceehhHHH
Confidence            9999999999999987631  23679999999999999999999999888776 99999999886554 67778887643

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.98  E-value=1.1e-31  Score=235.29  Aligned_cols=169  Identities=21%  Similarity=0.341  Sum_probs=148.1

Q ss_pred             CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEec
Q 042788           48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYP  127 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~  127 (258)
                      ..++..|++++|++++.+++++++++|+.++......|+||||+.|+++  ++  ..|+|||++.+.+.+.++|.||+++
T Consensus         2 ~p~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~--~g--~~R~ySi~s~~~~~~~l~i~Vk~~~   77 (321)
T 2pia_A            2 TPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVP--NG--SRRTYSLCNDSQERNRYVIAVKRDS   77 (321)
T ss_dssp             CTTTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECT--TS--CEEEEECCSCTTCCSEEEEEEECCT
T ss_pred             CCCCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECC--CC--CcEEEEeCCCCCCCCeEEEEEEEec
Confidence            3456789999999999999999999999887533458999999999987  23  7899999999987789999999988


Q ss_pred             CCc-cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccc
Q 042788          128 KGR-MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDIL  205 (258)
Q Consensus       128 ~G~-~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~  205 (258)
                      +|. +|+||+ ++++||+|.++||+|.|.++.+ .++++||||||||||+++|++++..++ . .+++|+|++|+.++++
T Consensus        78 ~G~g~S~~L~~~l~~Gd~v~v~gP~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~-~-~~v~l~~~~r~~~~~~  154 (321)
T 2pia_A           78 NGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG-L-RSFRLYYLTRDPEGTA  154 (321)
T ss_dssp             TSCSHHHHHHHSCCTTCEEEECCCBCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC-S-SEEEEEEEESCGGGCT
T ss_pred             CCcchhHHHHhcCCCCCEEEEeCCccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC-C-CcEEEEEEECChhhhH
Confidence            898 999998 9999999999999999988654 689999999999999999999998864 2 6899999999999999


Q ss_pred             cHHHHHHHHhhCCCCeEEEE
Q 042788          206 LKDELDSFATNSPNRFKVYY  225 (258)
Q Consensus       206 ~~~eL~~l~~~~~~~~~v~~  225 (258)
                      |.+||++++  ++.++++++
T Consensus       155 ~~~el~~l~--~~~~~~~~~  172 (321)
T 2pia_A          155 FFDELTSDE--WRSDVKIHH  172 (321)
T ss_dssp             THHHHHSTT--TTTTEEEEE
T ss_pred             HHHHHhcCc--cCCeEEEEE
Confidence            999999886  333477764

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.95  E-value=1.4e-27  Score=202.41  Aligned_cols=165  Identities=12%  Similarity=0.089  Sum_probs=136.1

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecC-C
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK-G  129 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~-G  129 (258)
                      +..|++++|++++.+++++++++|+.++......+.|||||.|.++..++....|+||+++.+.  +.++|.++.+++ |
T Consensus         5 ~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~~~~G   82 (252)
T 2gpj_A            5 KPAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLHDTDG   82 (252)
T ss_dssp             -CCCEEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECCSSCC
T ss_pred             CCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEeCCCC
Confidence            4568899999999999999999999886533336899999999998334556899999999775  688999888766 9


Q ss_pred             ccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788          130 RMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE  209 (258)
Q Consensus       130 ~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e  209 (258)
                      .+|+||+++++||+|.+.||.|.|.++.. .++++||||||||||+++|++++...    .++++++++++.+++...+ 
T Consensus        83 ~~S~~l~~l~~Gd~l~v~gP~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~~----~~~~~~~~~~~~~d~~~l~-  156 (252)
T 2gpj_A           83 PASSWAKTAQVGELIQIGGPGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPNN----AVGYAVIEVLSEADIQPLV-  156 (252)
T ss_dssp             HHHHHHHHCCTTCEEEEEEEECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCTT----CEEEEEEEESSGGGCCCCC-
T ss_pred             cHHHHHhhCCCCCEEEEecCCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCCC----CcEEEEEEECCHHHhhccc-
Confidence            99999999999999999999999987654 47899999999999999999998542    5788889999988875321 


Q ss_pred             HHHHHhhCCCCeEEEEEEcCC
Q 042788          210 LDSFATNSPNRFKVYYVLSQP  230 (258)
Q Consensus       210 L~~l~~~~~~~~~v~~~~s~~  230 (258)
                            ..++ ++++++.+++
T Consensus       157 ------~~~~-~~v~~~~~~~  170 (252)
T 2gpj_A          157 ------HPEH-VELHWVINPE  170 (252)
T ss_dssp             ------CCTE-EEEEEEECSS
T ss_pred             ------CCCC-cEEEEEeCCC
Confidence                  2344 8888777654

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.93  E-value=2.9e-25  Score=198.02  Aligned_cols=136  Identities=15%  Similarity=0.178  Sum_probs=115.6

Q ss_pred             eeeeccccccCCC-CCEEEEEEEEe--------cCCcccccccc-CCCCCEEEEec-ccceeeecCCCCceEEEEEcCcc
Q 042788          103 VIRPYTPITLDSD-IGYFELVVKMY--------PKGRMAHHFRE-MHEGEYLPVKG-PKGRLKYKVGQARAFGMIAGGTG  171 (258)
Q Consensus       103 ~~R~ySi~s~~~~-~~~l~~~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~g-P~G~f~~~~~~~~~vvliagGtG  171 (258)
                      ..|+|||+|+|.+ ++.++|+||.+        +.|.+|+||++ +++||+|.+.| |.|.|.++.+..++++|||||||
T Consensus       159 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~~~~~piimIa~GtG  238 (374)
T 1ddg_A          159 TPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTG  238 (374)
T ss_dssp             CCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCSSTTSCEEEECCGGG
T ss_pred             CCccceecCCCCCCCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCCCCCCCEEEEECCcc
Confidence            3699999999864 68999999986        56999999986 99999999998 55689887666789999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          172 ITPMFQLTRAILENPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       172 Itp~~sil~~l~~~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      |||++++++++...+ ...+++|+|++|+. +|++|.+||++++++.+. +++++++|++++.    +|++++.
T Consensus       239 IAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~l~~a~Srd~~~----k~yVq~~  306 (374)
T 1ddg_A          239 IAPFRAFMQQRAADE-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVL-TRIDLAWSRDQKE----KVYVQDK  306 (374)
T ss_dssp             GHHHHHHHHHHHHHT-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSC-CEEEEEETTSSSS----CCCHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCC-cEEEEEEecCCCC----CccHHHH
Confidence            999999999998763 34689999999998 799999999999988776 8999999987643    3455443

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.89  E-value=7.6e-23  Score=183.43  Aligned_cols=137  Identities=17%  Similarity=0.218  Sum_probs=113.0

Q ss_pred             eeeeccccccCCC-CCEEEEEEEEecC----------CccccccccCCCCCEEE--EecccceeeecCCCCceEEEEEcC
Q 042788          103 VIRPYTPITLDSD-IGYFELVVKMYPK----------GRMAHHFREMHEGEYLP--VKGPKGRLKYKVGQARAFGMIAGG  169 (258)
Q Consensus       103 ~~R~ySi~s~~~~-~~~l~~~Vk~~~~----------G~~S~~L~~l~~Gd~v~--v~gP~G~f~~~~~~~~~vvliagG  169 (258)
                      .+|+|||+|+|.. ++.++|+|+..+.          |.+|+||+++++||+|.  ++||+|.|.++.+..++++|||||
T Consensus       170 ~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp~~~~~piImIg~G  249 (393)
T 4dql_A          170 RPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPG  249 (393)
T ss_dssp             CCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSSCCCCCSSTTSCEEEECCG
T ss_pred             cceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCCCcccCccCCCCeEEEccC
Confidence            4799999999864 5889999998633          88999999999999998  789999999877666899999999


Q ss_pred             ccHHHHHHHHHHH---HhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          170 TGITPMFQLTRAI---LENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       170 tGItp~~sil~~l---~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      ||||||++++++.   ...+....+++|+|++|+ .+|++|.+||+++.+. ++ ++++.++|+++.+.   ++++++.
T Consensus       250 tGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~-l~l~~a~Sr~~~~~---k~yVq~~  323 (393)
T 4dql_A          250 TGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GI-ITLHTAFSRMPNQP---KTYVQHV  323 (393)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TS-CEEEEEESSCTTSC---CCCHHHH
T ss_pred             ceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CC-eEEEEEEeCCCCCC---CcchhhH
Confidence            9999999999984   334334468999999999 5899999999999765 55 99999999864432   4555543

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.88  E-value=1.5e-22  Score=183.96  Aligned_cols=137  Identities=12%  Similarity=0.103  Sum_probs=114.3

Q ss_pred             eeeccccccCCC-CCEEEEEEEEe----c-------CCccccccccCCCCCEEEEec-ccceeeecCCCCceEEEEEcCc
Q 042788          104 IRPYTPITLDSD-IGYFELVVKMY----P-------KGRMAHHFREMHEGEYLPVKG-PKGRLKYKVGQARAFGMIAGGT  170 (258)
Q Consensus       104 ~R~ySi~s~~~~-~~~l~~~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~g-P~G~f~~~~~~~~~vvliagGt  170 (258)
                      .|+|||+|+|.+ ++.++|+|+..    +       .|.+|+||+++++||+|.+.| |.|.|.++.+..++++||||||
T Consensus       210 ~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~~~~~piilIagGt  289 (435)
T 1f20_A          210 PRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGT  289 (435)
T ss_dssp             CEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCSCTTSCEEEECCGG
T ss_pred             CccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCCCCCCCEEEEECCc
Confidence            599999999864 57899999864    2       378999999999999999999 6778988766668999999999


Q ss_pred             cHHHHHHHHHHHHhC----CCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          171 GITPMFQLTRAILEN----PKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       171 GItp~~sil~~l~~~----~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      |||||+++++++...    +....+++|+|++|+.+ |++|.+||+++.++++. +++++++|++++++   +|++++.
T Consensus       290 GIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~l~~a~Sr~~~~~---k~yVq~~  364 (435)
T 1f20_A          290 GIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF-RELYTAYSREPDRP---KKYVQDV  364 (435)
T ss_dssp             GGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSE-EEEEEEESSCTTSC---CCCHHHH
T ss_pred             CcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCc-cEEEEEECCCCCCC---CcchhhH
Confidence            999999999988763    12346899999999997 78999999999988776 78999999876543   4566654

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.88  E-value=9.9e-23  Score=189.10  Aligned_cols=143  Identities=15%  Similarity=0.178  Sum_probs=113.9

Q ss_pred             eeeeccccccCC-CCCEEEEEEEEe-----------cCCccccccccC-----------CCCC-------EEEEecccc-
Q 042788          103 VIRPYTPITLDS-DIGYFELVVKMY-----------PKGRMAHHFREM-----------HEGE-------YLPVKGPKG-  151 (258)
Q Consensus       103 ~~R~ySi~s~~~-~~~~l~~~Vk~~-----------~~G~~S~~L~~l-----------~~Gd-------~v~v~gP~G-  151 (258)
                      ..|+|||+|++. +++.++|+|+.+           ..|.+|+||+++           ++||       .|.+.+|.| 
T Consensus       290 ~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~  369 (539)
T 2qtl_A          290 QPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTN  369 (539)
T ss_dssp             CCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSCC
T ss_pred             cceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCC
Confidence            469999999986 468999999987           458899999876           8999       999999987 


Q ss_pred             eeeecCCCCceEEEEEcCccHHHHHHHHHHHHh---CC--CCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEE
Q 042788          152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILE---NP--KDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYY  225 (258)
Q Consensus       152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~---~~--~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~  225 (258)
                      .|.++.+..+++||||||||||||++++++...   .+  ....+++|+|++|+. +|++|.+||+++++.++. +++++
T Consensus       370 ~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~-~~l~~  448 (539)
T 2qtl_A          370 SFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL-THLKV  448 (539)
T ss_dssp             CCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS-CEEEE
T ss_pred             CccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC-cEEEE
Confidence            698876666899999999999999999998532   11  134689999999999 799999999999988776 89999


Q ss_pred             EEcCCCC--CCCCccccccHHHH
Q 042788          226 VLSQPTE--VWNGGIGHVSKEMI  246 (258)
Q Consensus       226 ~~s~~~~--~~~~~~G~i~~~~l  246 (258)
                      ++|++++  .|.+.+||+++.+.
T Consensus       449 afSRd~~~~~~~g~k~yVqd~l~  471 (539)
T 2qtl_A          449 SFSRDAPVGEEEAPAKYVQDNIQ  471 (539)
T ss_dssp             EESSSCC------CCCSHHHHHH
T ss_pred             EEccCCCccccCCCccchhHHHH
Confidence            9998764  46678899987543

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.86  E-value=1.6e-21  Score=185.98  Aligned_cols=138  Identities=12%  Similarity=0.098  Sum_probs=115.3

Q ss_pred             eeeeccccccCCC-CCEEEEEEEEe----c-------CCccccccccCCCCCEEEEec-ccceeeecCCCCceEEEEEcC
Q 042788          103 VIRPYTPITLDSD-IGYFELVVKMY----P-------KGRMAHHFREMHEGEYLPVKG-PKGRLKYKVGQARAFGMIAGG  169 (258)
Q Consensus       103 ~~R~ySi~s~~~~-~~~l~~~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~g-P~G~f~~~~~~~~~vvliagG  169 (258)
                      ..|+|||+|+|.+ ++.++|+|+..    +       .|.+|+||+++++||+|.+.+ |.|.|.++.+..+++||||||
T Consensus       430 ~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~~~~~piIlIagG  509 (688)
T 1tll_A          430 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG  509 (688)
T ss_dssp             CCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCSCTTSCEEEEEEG
T ss_pred             ceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCcCCCCCEEEEEcC
Confidence            3699999999864 57899999864    2       278999999999999999999 677898876666899999999


Q ss_pred             ccHHHHHHHHHHHHhC----CCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788          170 TGITPMFQLTRAILEN----PKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE  244 (258)
Q Consensus       170 tGItp~~sil~~l~~~----~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~  244 (258)
                      ||||||+++++++...    +....+++|+|++|+.+ |++|.+||+++.++++. +++++++|+++++|   +|++++.
T Consensus       510 tGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~-~~l~~a~Sr~~~~~---k~yVq~~  585 (688)
T 1tll_A          510 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF-RELYTAYSREPDRP---KKYVQDV  585 (688)
T ss_dssp             GGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSE-EEEEEEESSCTTSC---CCCHHHH
T ss_pred             cchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCc-eEEEEEECCCCCCC---ccchhhh
Confidence            9999999999988763    12347899999999998 79999999999988876 89999999986554   3555543

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.85  E-value=4.4e-21  Score=174.59  Aligned_cols=139  Identities=16%  Similarity=0.202  Sum_probs=113.2

Q ss_pred             eeeeccccccCCC-CCEEEEEEEEe---------cCCccccccccCCCCC------EEEEecccceeeecCCCCceEEEE
Q 042788          103 VIRPYTPITLDSD-IGYFELVVKMY---------PKGRMAHHFREMHEGE------YLPVKGPKGRLKYKVGQARAFGMI  166 (258)
Q Consensus       103 ~~R~ySi~s~~~~-~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~~~~vvli  166 (258)
                      ..|+|||+|+|.. ++.++|+|+..         +.|.+|+||+++.+|+      .|.+.+|.|.|.++.+..++++||
T Consensus       233 ~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImI  312 (458)
T 3qfs_A          233 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMV  312 (458)
T ss_dssp             CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred             cceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEE
Confidence            3699999999864 68899988642         3588999998877765      699999999999877667899999


Q ss_pred             EcCccHHHHHHHHHHHH---hCCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcccccc
Q 042788          167 AGGTGITPMFQLTRAIL---ENPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVS  242 (258)
Q Consensus       167 agGtGItp~~sil~~l~---~~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~  242 (258)
                      |||||||||++++++..   .++....+++|+|++|+. +|++|.+||++++++++. +++++++|+++.    .+||++
T Consensus       313 ggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l-~~l~~a~SRd~~----~k~yVq  387 (458)
T 3qfs_A          313 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGAL-TQLNVAFSREQS----HKVYVQ  387 (458)
T ss_dssp             CCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSS-SEEEEEETTSSS----SCCCHH
T ss_pred             cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCC-CEEEEEEECCCC----CcccHh
Confidence            99999999999999853   232234689999999996 799999999999988765 689999998653    367777


Q ss_pred             HHHH
Q 042788          243 KEMI  246 (258)
Q Consensus       243 ~~~l  246 (258)
                      +.+.
T Consensus       388 d~l~  391 (458)
T 3qfs_A          388 HLLK  391 (458)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.84  E-value=2.2e-22  Score=191.84  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=120.6

Q ss_pred             CCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEE------------ecCCccccccccCCC------------
Q 042788           86 PVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKM------------YPKGRMAHHFREMHE------------  140 (258)
Q Consensus        86 ~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~------------~~~G~~S~~L~~l~~------------  140 (258)
                      .|+|++...+|    ...+|+|||+|+|.. ++.++|+|+.            ...|.+|+||+++++            
T Consensus       415 ~p~~~l~~~lp----~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~  490 (682)
T 2bpo_A          415 VPMQFLVESVP----QMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL  490 (682)
T ss_dssp             SCHHHHHHHSC----BCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred             CCHHHHHHhCc----ccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence            46777766555    246899999999864 5789998753            236889999987777            


Q ss_pred             CCEEEEeccccee--------------eecCCCCceEEEEEcCccHHHHHHHHHHHHhCC---------CCCCeEEEEEE
Q 042788          141 GEYLPVKGPKGRL--------------KYKVGQARAFGMIAGGTGITPMFQLTRAILENP---------KDKTNVHLIYA  197 (258)
Q Consensus       141 Gd~v~v~gP~G~f--------------~~~~~~~~~vvliagGtGItp~~sil~~l~~~~---------~~~~~v~l~~~  197 (258)
                      |+++.+.||+|.|              .++.+...+++|||+|||||||+++++++....         ....+++|+|+
T Consensus       491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG  570 (682)
T 2bpo_A          491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYG  570 (682)
T ss_dssp             CCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEE
T ss_pred             ccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEe
Confidence            9999999999986              233344578999999999999999999887532         12468999999


Q ss_pred             eCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788          198 NVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ  247 (258)
Q Consensus       198 ~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~  247 (258)
                      +|+.+|++|.+||++++.+.+.++++++++|+++.   +.+||+++.+.+
T Consensus       571 ~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e  617 (682)
T 2bpo_A          571 SRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKD  617 (682)
T ss_dssp             ESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHH
T ss_pred             cCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHh
Confidence            99999999999999996544333999999998643   347888775443

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.83  E-value=2.2e-20  Score=176.27  Aligned_cols=139  Identities=17%  Similarity=0.220  Sum_probs=111.8

Q ss_pred             eeeeccccccCCC-CCEEEEEEEEe---------cCCccccccccCCC-CC-----EEEEecccceeeecCCCCceEEEE
Q 042788          103 VIRPYTPITLDSD-IGYFELVVKMY---------PKGRMAHHFREMHE-GE-----YLPVKGPKGRLKYKVGQARAFGMI  166 (258)
Q Consensus       103 ~~R~ySi~s~~~~-~~~l~~~Vk~~---------~~G~~S~~L~~l~~-Gd-----~v~v~gP~G~f~~~~~~~~~vvli  166 (258)
                      ..|+|||+|+|.. ++.++|+|+..         +.|.+|+||+++.+ ||     +|.+.+|.|.|.++.+..++++||
T Consensus       393 ~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~~~~~piimI  472 (618)
T 3qe2_A          393 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMV  472 (618)
T ss_dssp             CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred             ccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCCCCCCCeEEE
Confidence            3699999999854 57888887532         35889999998888 88     999999999999877667899999


Q ss_pred             EcCccHHHHHHHHHHHHh---CCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcccccc
Q 042788          167 AGGTGITPMFQLTRAILE---NPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVS  242 (258)
Q Consensus       167 agGtGItp~~sil~~l~~---~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~  242 (258)
                      |||||||||++++++...   ++....+++|+|++|+. +|++|.+||+++.++... ++++.++|++++.    +||++
T Consensus       473 g~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l-~~l~~a~Srd~~~----k~yVq  547 (618)
T 3qe2_A          473 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGAL-TQLNVAFSREQSH----KVYVQ  547 (618)
T ss_dssp             CCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSS-SEEEEEETTSSSS----CCCHH
T ss_pred             cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCC-cEEEEEEcCCCCC----CCcHH
Confidence            999999999999998763   32234689999999999 599999999999887543 5999999987542    56776


Q ss_pred             HHHH
Q 042788          243 KEMI  246 (258)
Q Consensus       243 ~~~l  246 (258)
                      +.+.
T Consensus       548 d~l~  551 (618)
T 3qe2_A          548 HLLK  551 (618)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.74  E-value=2.1e-19  Score=141.50  Aligned_cols=104  Identities=22%  Similarity=0.210  Sum_probs=73.5

Q ss_pred             CCCCCE-EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788          138 MHEGEY-LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN  216 (258)
Q Consensus       138 l~~Gd~-v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~  216 (258)
                      +++||+ +.++||+|+|.... ..++++||||||||||++++++++.+++   .+++++ ++|+.++++|.+||++++.+
T Consensus         1 L~~Gd~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r~~~d~~~~~el~~l~~~   75 (158)
T 3lrx_A            1 MKEGDSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR   75 (158)
T ss_dssp             -----------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EECBGGGCCSHHHHHHHSSE
T ss_pred             CcCCCEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhc
Confidence            579999 69999999954333 4689999999999999999999998764   589999 99999999999999998643


Q ss_pred             CCCCeEEEEEEcCC----CCCCCCccccccHHHHhhhCC
Q 042788          217 SPNRFKVYYVLSQP----TEVWNGGIGHVSKEMIQMHCP  251 (258)
Q Consensus       217 ~~~~~~v~~~~s~~----~~~~~~~~G~i~~~~l~~~~~  251 (258)
                          +.++++++++    +++|.+..|++++ .+++.++
T Consensus        76 ----~~~~~v~~~~~~~~~~~~~g~~G~v~~-~l~~~l~  109 (158)
T 3lrx_A           76 ----HIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELLE  109 (158)
T ss_dssp             ----EEECCBCCCTTSCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             ----eEEEEeeccccccCCCCCCCCcccccH-HHHHhhc
Confidence                6555444443    2456778899997 4555544

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.69  E-value=4.8e-18  Score=131.40  Aligned_cols=100  Identities=20%  Similarity=0.169  Sum_probs=76.0

Q ss_pred             EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEE
Q 042788          144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKV  223 (258)
Q Consensus       144 v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v  223 (258)
                      +.+.||+|+|...+ ..++++|||||+||||++++++++.+++   .+++++ ++|+.+++++.+||++++++    +.+
T Consensus         3 ~~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R~~~~~~~~~el~~l~~~----~~~   73 (142)
T 3lyu_A            3 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR----HIV   73 (142)
T ss_dssp             ----CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEEEGGGCCSHHHHHTTSSE----EEE
T ss_pred             eeeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhh----eEE
Confidence            47899999965443 3589999999999999999999998865   579999 99999999999999987643    666


Q ss_pred             EEEEcCC----CCCCCCccccccHHHHhhhCCCC
Q 042788          224 YYVLSQP----TEVWNGGIGHVSKEMIQMHCPTP  253 (258)
Q Consensus       224 ~~~~s~~----~~~~~~~~G~i~~~~l~~~~~~~  253 (258)
                      +++++.+    +++|.+..|++++ .+++.+++.
T Consensus        74 ~~~~~~~~~~~~d~~~g~~G~v~~-~l~~~~~~~  106 (142)
T 3lyu_A           74 EPVPLNPNQDFLANMKNVSQRLKE-KVRELLESE  106 (142)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH-HHHHHHHSS
T ss_pred             EEeecccccCCCCCCCCCccchhH-HHHHhcccC
Confidence            6555543    3456778899996 466665443

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.68  E-value=3.8e-17  Score=131.12  Aligned_cols=88  Identities=14%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC------CCCCeEEEEEEeCCCcccc-cHHHHHHHHhh
Q 042788          144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP------KDKTNVHLIYANVTVGDIL-LKDELDSFATN  216 (258)
Q Consensus       144 v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~------~~~~~v~l~~~~r~~~d~~-~~~eL~~l~~~  216 (258)
                      |.++||+|.|..+...++++|||||||||||++++++++....      ....+++|+|++|+.+++. |.++|++++++
T Consensus         1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~   80 (186)
T 3a1f_A            1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ   80 (186)
T ss_dssp             CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred             CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence            3578999998765556789999999999999999999998641      2357899999999999998 99999999877


Q ss_pred             C-----CCCeEEEEEEcCCC
Q 042788          217 S-----PNRFKVYYVLSQPT  231 (258)
Q Consensus       217 ~-----~~~~~v~~~~s~~~  231 (258)
                      +     |+++++++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~t~~~  100 (186)
T 3a1f_A           81 MQERNNAGFLSYNIYLTGWD  100 (186)
T ss_dssp             HHHTTCTTSEEEEEEETTC-
T ss_pred             HhhccCCCeEEEEEEEcCCC
Confidence            5     64599999999763

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}

Probab=84.38  E-value=0.92  Score=39.23  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=26.9

Q ss_pred             ceEEEEEcCcc--HHHHHHHHHHHHhCCCCCCeEEEEE
Q 042788          161 RAFGMIAGGTG--ITPMFQLTRAILENPKDKTNVHLIY  196 (258)
Q Consensus       161 ~~vvliagGtG--Itp~~sil~~l~~~~~~~~~v~l~~  196 (258)
                      +++++.|||||  |.|.+++++++.+++   .+|.++-
T Consensus         3 ~~i~i~~GGTgGHi~palala~~L~~~g---~~V~~vg   37 (365)
T 3s2u_A            3 GNVLIMAGGTGGHVFPALACAREFQARG---YAVHWLG   37 (365)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHTT---CEEEEEE
T ss_pred             CcEEEEcCCCHHHHHHHHHHHHHHHhCC---CEEEEEE
Confidence            68899999997  999999999999875   4565543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d2cnda1	114	b.43.4.2 (A:11-124) Nitrate reductase core domain	1e-20
d1umka1	124	b.43.4.2 (A:30-153) cytochrome b5 reductase {Human	4e-20
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	1e-17
d1gvha2	107	b.43.4.2 (A:147-253) Flavohemoglobin, central doma	8e-17
d1cqxa2	111	b.43.4.2 (A:151-261) Flavohemoglobin, central doma	1e-14
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	2e-13
d2piaa1	103	b.43.4.2 (A:1-103) Phthalate dioxygenase reductase	4e-13
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	2e-11
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	2e-11
d1krha1	100	b.43.4.2 (A:106-205) Benzoate dioxygenase reductas	4e-10
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	6e-10
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	1e-09
d1tvca1	109	b.43.4.2 (A:2-110) Methane monooxygenase component	2e-09
d1a8pa1	99	b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxi	6e-09
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	1e-08
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	1e-07
d2piaa2	120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	4e-07
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	6e-07
d1ep3b1	101	b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B,	9e-07
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	2e-06
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	3e-06
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	4e-06
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	5e-06
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	3e-05
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	5e-05
d1ja1a3	160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	9e-04

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} Length = 114

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

 Score = 82.1 bits (202), Expect = 1e-20
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 56  EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSD 115
             +L  +  +S +   FRF+LP    +LGLP+G+HI            +R YTP ++  +
Sbjct: 4   HCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGK-LCMRAYTPTSMVDE 62

Query: 116 IGYFELVVKMYPK---------GRMAHHFREMHEGEYLPVKGPKGRLKYK 156
           IG+F+L+VK+Y K         G M  +   +  G Y+ VKGP G ++Y 
Sbjct: 63  IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYT 112

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 4e-20
 Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 10/117 (8%)

Query: 49  LDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYT 108
             P+     +L  R  ISH+T +FRFALP    ILGLPVGQHI    +      V+RPYT
Sbjct: 7   ESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGN-LVVRPYT 65

Query: 109 PITLDSDIGYFELVVKMYPK---------GRMAHHFREMHEGEYLPVKGPKGRLKYK 156
           PI+ D D G+ +LV+K+Y K         G+M+ +   M  G+ +  +GP G L Y+
Sbjct: 66  PISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQ 122

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 1e-17
 Identities = 47/108 (43%), Positives = 67/108 (62%)

Query: 149 PKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKD 208
           P  +    +   ++ GMIAGGTGITPM Q+ RAI+++P D T  HL++AN T  DILL+ 
Sbjct: 7   PDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRP 66

Query: 209 ELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256
           EL+        RFK++Y L +  E W+ G G V++EMI+ H P P  +
Sbjct: 67  ELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEE 114

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} Length = 107

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

 Score = 71.7 bits (175), Expect = 8e-17
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 52  ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPIT 111
           E  ++F++  +TP S     F        ++     GQ++    K             +T
Sbjct: 4   EGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLT 63

Query: 112 LDSDIGYFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKGR 152
              D   + + VK    G++++      + G+ + +  P G 
Sbjct: 64  RKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGD 105

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 111

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 66.3 bits (161), Expect = 1e-14
 Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 6/105 (5%)

Query: 54  FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGK-DSEGNEVIRPYTPITL 112
           ++ F + ++ P S     F         ++    GQ+        + G + IR Y+   +
Sbjct: 4   WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDM 63

Query: 113 DSDIGYFELVVKMYPKGRM-----AHHFREMHEGEYLPVKGPKGR 152
            +   Y   V +     +            ++ G+ + +  P G 
Sbjct: 64  PNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS 108

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 153 LKYKVGQARAFGMIAGGTGITPMFQLTRAIL-ENPKDKTNVHLIYANVTVGDILLKDELD 211
           +  K   AR   MI GG+GITPM+Q+ +A+L + P+D T +HL+YAN T  DILL+DELD
Sbjct: 5   INGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELD 64

Query: 212 SFATNSPNRFKVYY---VLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
            +A   P+R KV+Y    + +P E W   +G V++ +++ H P    D  
Sbjct: 65  RWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTL 114

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 103

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 62.0 bits (150), Expect = 4e-13
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 52  ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPIT 111
           + F   K+  +  I+ +   F    P+   +     G ++         N   R Y+   
Sbjct: 6   DGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVP----NGSRRTYSLCN 61

Query: 112 LDSDIGYFELVVKMYPKGRMA--HHFREMHEGEYLPVKGPK 150
              +   + + VK    GR        +  EG+ + V  P+
Sbjct: 62  DSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPR 102

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 165 MIAGGTGITPMFQLTRAILEN----PKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220
           MIA GTG+ P     R +        +      L         +L  +E  S+    P+ 
Sbjct: 8   MIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDN 67

Query: 221 FKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249
           F+    LS+  +  +GG  +V  ++ +  
Sbjct: 68  FRYDKALSREQKNRSGGKMYVQDKIEEYS 96

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 58.4 bits (140), Expect = 2e-11
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
           M+AGGTGITPM      + ++ +   N          L++   T  +IL K+EL+     
Sbjct: 11  MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 70

Query: 217 SPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249
            P+ F++ Y +S+  +   GG  ++   + +  
Sbjct: 71  YPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 103

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 100

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 53.2 bits (127), Expect = 4e-10
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 56  EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSD 115
           E  L +   +S +T  F   L      +    GQ++        G    R Y+  +   +
Sbjct: 5   EGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVT---LPGTTETRSYSFSSQPGN 61

Query: 116 IGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR 152
                +V  +       +   +   G+ +   GP G 
Sbjct: 62  RLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGS 98

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 54.5 bits (130), Expect = 6e-10
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 165 MIAGGTGITPMFQLTRAILENP----KDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220
           M+  GTGI P       +        K      L     T   +L K+E +     +P+ 
Sbjct: 13  MLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDN 72

Query: 221 FKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
           F++ + +S+      G   ++   M Q          +
Sbjct: 73  FRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKK 110

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           +I GG G+ P+++L + + +       + ++    +    +L++E  +          + 
Sbjct: 13  IIGGGIGVPPLYELAKQLEKTGC---QMTILLGFASENVKILENEFSNLK-----NVTLK 64

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQMHCP 251
                 +    G +G +  E+      
Sbjct: 65  IATDDGSYGTKGHVGMLMNEIDFEVDA 91

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 109

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 52.0 bits (124), Expect = 2e-09
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 56  EFKLTKRTPISHNTAKFRFALP---KSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITL 112
           E ++     +S NT +F             +    GQ +        G +V R Y+P  L
Sbjct: 12  EAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLT---IPGTDVSRSYSPANL 68

Query: 113 DSDIGYFELVVKMYPKGRMAHH-FREMHEGEYLPVKGPKG 151
            +  G  E ++++ P+GR + +   +   G+ L VKGP G
Sbjct: 69  PNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLG 108

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]} Length = 99

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 53  NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITL 112
           N    ++      +     F+     S   L    GQ ++    + +G  ++R Y+  + 
Sbjct: 2   NLNVERVLSVHHWNDTLFSFKTTRNPS---LRFENGQFVMIG-LEVDGRPLMRAYSIASP 57

Query: 113 DSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPV-KGPKGRL 153
           + +  + E        G +    + + EG+ L V + P G L
Sbjct: 58  NYE-EHLEFFSIKVQNGPLTSRLQHLKEGDELMVSRKPTGTL 98

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           +I+GG G+TPM  + +  L+ P  +  V  ++         ++D L   A    N     
Sbjct: 10  LISGGVGLTPMVSMLKVALQAPPRQ--VVFVHGARNSAVHAMRDRLREAAKTYENLDLFV 67

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQ 247
           +      E   G        +  
Sbjct: 68  FYDQPLPEDVQGRDYDYPGLVDV 90

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           +I+ G G TPM  +   + +       V+  +A          DE+     + P  F  +
Sbjct: 11  LISAGVGQTPMLAMLDTLAKA-GHTAQVNWFHAAENGDVHAFADEVKELGQSLPR-FTAH 68

Query: 225 YVLSQPTEVWNGGI-----GHVSKEMIQMHCPTPAPDI 257
               QP+E           G +    ++     P    
Sbjct: 69  TWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQF 106

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 45.7 bits (107), Expect = 4e-07
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218
           +A++F ++AGG GITPM  + R +           L Y           DEL S      
Sbjct: 7   RAKSFILVAGGIGITPMLSMARQLRAEGLRS--FRLYYLTRDPEGTAFFDELTSDE--WR 62

Query: 219 NRFKVYYVLSQPTEVWN 235
           +  K+++    PT+ ++
Sbjct: 63  SDVKIHHDHGDPTKAFD 79

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 12/86 (13%), Positives = 17/86 (19%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           MI  GTGI P     +    +     N           D L + E   +           
Sbjct: 11  MIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDL 70

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQMHC 250
                  E          +       
Sbjct: 71  AWSRDQKEKVYVQDKLREQGAELWRW 96

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 101

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 44.0 bits (103), Expect = 9e-07
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 57  FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
             +  +  +++N  +                GQ +     +     + RP +  + D   
Sbjct: 7   MTVVSQREVAYNIFEMVLKGTLVDE--MDLPGQFLHLAVPNGAM-LLRRPISISSWDKRA 63

Query: 117 GYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR 152
               ++ ++  +    +   ++  G  + V GP G 
Sbjct: 64  KTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGN 99

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPN----- 219
           M++ GTG+ P   L +      +    V LI+    V ++  +  +      S       
Sbjct: 12  MLSTGTGLAPFMSLIQDPEVYERF-EKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAV 70

Query: 220 --RFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250
             +   Y  +++ +    G +  + +       
Sbjct: 71  KEKLIYYPTVTRESFHNQGRLTDLMRSGKLFED 103

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           M+A GT I P   + R   +      N+ L++A     D+     +         + ++ 
Sbjct: 11  MLATGTAIGPYLSILRLGKDL-DRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQ 69

Query: 225 YVLSQPTEVWN 235
            V+S+ T   +
Sbjct: 70  TVVSRETAAGS 80

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           +IAGGTG +    +    L    ++      +       +    EL++ +   P    V 
Sbjct: 10  LIAGGTGFSYARSILLTALARNPNRDITI-YWGGREEQHLYDLCELEALSLKHPGLQVVP 68

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQMHCP 251
            V       W G  G V   ++Q H  
Sbjct: 69  VVEQPEAG-WRGRTGTVLTAVLQDHGT 94

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
           M+AGGTGI P   + + + +    +  V L++      D++  ++LD+     P  F+  
Sbjct: 10  MLAGGTGIAPFLSMLQVLEQK-GSEHPVRLVFGVTQDCDLVALEQLDALQQKLPW-FEYR 67

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDI 257
            V++   E  +   G+V+  +          D+
Sbjct: 68  TVVAHA-ESQHERKGYVTGHIEYDWLNGGEVDV 99

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVY 224
            +AGGTG+ P+  + R + E         + +   T  ++   DEL S   +  N   V 
Sbjct: 13  FVAGGTGLAPVVSMVRQMQEW-TAPNETRIYFGVNTEPELFYIDELKSLERSMRN-LTVK 70

Query: 225 YVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
             +  P+  W G  G     + +    + A    
Sbjct: 71  ACVWHPSGDWEGEQGSPIDALREDLESSDANPDI 104

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 165 MIAGGTGITPM----FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220
           ++  GTGI P      Q    I     +   + L++         +  E    A N    
Sbjct: 14  LVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF 73

Query: 221 FKVYYVLSQPTEVWNGGIGHVSKEMI 246
            ++Y   S+  +     +  V +E +
Sbjct: 74  RELYTAYSREPDRPKKYVQDVLQEQL 99

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 9e-04
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 165 MIAGGTGITP---MFQLTRAILENPKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNR 220
           M+  GTGI P     Q    + E  K+     L Y       D L ++EL  F  +    
Sbjct: 12  MVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALT 71

Query: 221 FKVYYVLSQPTE 232
                   +   
Sbjct: 72  QLNVAFSREQAH 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.87
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.86
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.86
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.86
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	99.85
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	99.85
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.84
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.82
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.82
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	99.82
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.82
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.81
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.79
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.74
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.71
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.7
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.69
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.67
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.58
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.58
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.57
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.56
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.54
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.5
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.5
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	99.48
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.44
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.39
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.39
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.26
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.23
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	97.54
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	96.69
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	93.16

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.1e-22  Score=143.71  Aligned_cols=94  Identities=17%  Similarity=0.263  Sum_probs=83.8

Q ss_pred             CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788           53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA  132 (258)
Q Consensus        53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S  132 (258)
                      +|.+++|++++.++++++.++++.|.    +.|+||||+.|.++ .+|....|+|||+|.|.+ +.++++||++++|.+|
T Consensus         2 ~w~~a~V~~v~~~t~~v~~l~~~~p~----~~f~pGQ~v~l~~~-~~g~~~~R~YSi~s~p~~-~~~~~~vk~~~~G~~S   75 (99)
T d1fdra1           2 DWVTGKVTKVQNWTDALFSLTVHAPV----LPFTAGQFTKLGLE-IDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGKLS   75 (99)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEECCC----CCCCTTCEEEEEEC-C---CEEEEEECCSCTTC-SSEEEEEECCTTCSSH
T ss_pred             CcEEEEEEEEEEcCCCEEEEEEcCCC----CCCCCCcEEEeccC-CCCCcEEEEEccCCCCCC-ceeEEEEEEecCcHHH
Confidence            68999999999999999999999763    68999999999998 677788999999999876 7899999999999999


Q ss_pred             cccccCCCCCEEEEecccce
Q 042788          133 HHFREMHEGEYLPVKGPKGR  152 (258)
Q Consensus       133 ~~L~~l~~Gd~v~v~gP~G~  152 (258)
                      ++|+++++||+|.++||.|.
T Consensus        76 ~~l~~lk~GD~v~v~gP~~g   95 (99)
T d1fdra1          76 PRLAALKPGDEVQVVSEAAG   95 (99)
T ss_dssp             HHHHTCCTTCEEEEESSCBC
T ss_pred             HHHhhCCCCCEEEECcCCCC
Confidence            99999999999999997665

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-21  Score=145.92  Aligned_cols=109  Identities=44%  Similarity=0.808  Sum_probs=97.2

Q ss_pred             CCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEe
Q 042788           47 GSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMY  126 (258)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~  126 (258)
                      +..+|..+.+++|++++.+++|++.++|+.++......+.||||+.++++ .++....|+||++|.+.+++.+++.||.+
T Consensus         5 t~~~P~~~~~~~v~~~~~it~d~~~f~f~~p~~~~~~~~~~Gq~v~v~~~-~~~~~~~R~Ys~~s~~~~~g~~~~~vk~~   83 (124)
T d1umka1           5 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDKGFVDLVIKVY   83 (124)
T ss_dssp             SCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEE-ETTEEEEEEECCSSCTTCCSEEEEEEECC
T ss_pred             cccCCCcCEEEEEEEEEEeCCCeEEEEEEcCCcccccccceeeEEEEEec-ccceeEEEeeccCCcccCCceEEEEEEec
Confidence            45578888999999999999999999999998766678999999999988 66778899999999998889999999953


Q ss_pred             ---------cCCccccccccCCCCCEEEEecccceeeec
Q 042788          127 ---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYK  156 (258)
Q Consensus       127 ---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~  156 (258)
                               ++|.+|.+|+++++||+|.++||+|.|.+.
T Consensus        84 ~~~~~~~~~~Gg~~s~~l~~l~~GD~v~v~gP~G~F~y~  122 (124)
T d1umka1          84 FKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQ  122 (124)
T ss_dssp             CSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEE
T ss_pred             ccccccccCCCcchHHHHhcCCCCCEEEEECCeeeeEEC
Confidence                     446677888999999999999999999875

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.86  E-value=1.2e-21  Score=144.41  Aligned_cols=102  Identities=36%  Similarity=0.723  Sum_probs=92.9

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEec------
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYP------  127 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~------  127 (258)
                      +.+++|++++.+++|++.++|+.|++.....+.||||+.++++ .++....|+||++|.+.+++.++|.||.++      
T Consensus         2 k~~~klv~~~~it~d~~~~~f~~p~~~~~~~~~~Gq~v~v~~~-~~~~~~~R~Ys~~s~~~~~~~~~~~ik~~~~~~~~~   80 (114)
T d2cnda1           2 RIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT-IEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPK   80 (114)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEE-ETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTT
T ss_pred             cEEEEEEEEEEcCCCeEEEEEECCCcccccCccceEEEEEEee-cccceEEeeeccCCCCCCCCEEEEEEEeccCCCccc
Confidence            4589999999999999999999988766788999999999998 677788999999999988899999999863      


Q ss_pred             ---CCccccccccCCCCCEEEEecccceeeec
Q 042788          128 ---KGRMAHHFREMHEGEYLPVKGPKGRLKYK  156 (258)
Q Consensus       128 ---~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~  156 (258)
                         +|.+|.+|+++++||+|.++||+|+|.+.
T Consensus        81 ~~~gG~~s~~l~~l~~Gd~v~i~gP~G~F~y~  112 (114)
T d2cnda1          81 FPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYT  112 (114)
T ss_dssp             BTTCCHHHHHHHHCCTTCEEEEEEEECSEECC
T ss_pred             cccCchhHHHHhhCCCCCEEEEECCceeeEEC
Confidence               48899999999999999999999999875

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.86  E-value=2.7e-21  Score=138.72  Aligned_cols=95  Identities=18%  Similarity=0.305  Sum_probs=86.1

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      +...+|++++.++++++.++++.++.   +.|+||||+.+.++ ..|....|+|||+|.|.+ +.++++||++++|.+|+
T Consensus         3 ~~~~kV~~v~~~t~~~~~~~l~~~~~---~~f~aGQ~~~l~~~-~~g~~~~R~ySi~S~p~~-~~~~~~i~~~~~G~~S~   77 (99)
T d1a8pa1           3 LNVERVLSVHHWNDTLFSFKTTRNPS---LRFENGQFVMIGLE-VDGRPLMRAYSIASPNYE-EHLEFFSIKVQNGPLTS   77 (99)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEE-ETTEEEEEEEECCSCTTS-SEEEEEEECCSSCSSHH
T ss_pred             cceEEEEEEEecCCCEEEEEecCCCC---CccCCCcEEEEecc-CCCceeEeeccccCCCCC-CcEEEEEEEeCCCChhH
Confidence            45668999999999999999998875   78999999999998 667788999999998876 78999999999999999


Q ss_pred             ccccCCCCCEEEEe-ccccee
Q 042788          134 HFREMHEGEYLPVK-GPKGRL  153 (258)
Q Consensus       134 ~L~~l~~Gd~v~v~-gP~G~f  153 (258)
                      ||+++++||+|.+. ||+|.|
T Consensus        78 ~L~~l~~Gd~v~v~~gP~G~l   98 (99)
T d1a8pa1          78 RLQHLKEGDELMVSRKPTGTL   98 (99)
T ss_dssp             HHTTCCTTCEEEEESCCBCSC
T ss_pred             HHHhCCCCCEEEECCCCceeE
Confidence            99999999999996 999986

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.85  E-value=1.7e-21  Score=142.87  Aligned_cols=104  Identities=16%  Similarity=0.301  Sum_probs=89.4

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC-CCCeeeeeccccccCCCCCEEEEEEEEe---
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS-EGNEVIRPYTPITLDSDIGYFELVVKMY---  126 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~-~g~~~~R~ySi~s~~~~~~~l~~~Vk~~---  126 (258)
                      |+.|++++|++++.+++++++++|+.++....+.|.||||+.|+++.. .+....|+|||+|.|.+ +.++++||+.   
T Consensus         1 w~g~r~~~V~~~~~~t~dv~~~~l~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~~-~~~~~~v~~~~~~   79 (111)
T d1cqxa2           1 WKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNG-RTYRISVKREGGG   79 (111)
T ss_dssp             CSSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCS-SCEEEEEECCCBT
T ss_pred             CCCceEEEEEEEEEeCCCcEEEEEEeCCcCcccCCCCCCEEEEEeecCCCcceeeeeccccCCccC-CCeEEEEEEecCC
Confidence            357999999999999999999999988765567899999999998722 24467899999998865 6799999975   


Q ss_pred             --cCCccccccc-cCCCCCEEEEecccceeee
Q 042788          127 --PKGRMAHHFR-EMHEGEYLPVKGPKGRLKY  155 (258)
Q Consensus       127 --~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~  155 (258)
                        +.|.+|+||+ ++++||+|.++||+|+|.+
T Consensus        80 ~~~~G~~S~~l~~~l~~Gd~v~v~gP~G~F~L  111 (111)
T d1cqxa2          80 PQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHI  111 (111)
T ss_dssp             TBCCCHHHHHHHHHCCTTCEEEECCCBCSCSC
T ss_pred             CcccchhHHHHHhcCCCCCEEEEEccCeEeEC
Confidence              3588999996 7999999999999999863

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.1e-21  Score=141.42  Aligned_cols=101  Identities=20%  Similarity=0.321  Sum_probs=89.5

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC--CeeeeeccccccCCCCCEEEEEEEEecC
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--NEVIRPYTPITLDSDIGYFELVVKMYPK  128 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g--~~~~R~ySi~s~~~~~~~l~~~Vk~~~~  128 (258)
                      |+.|++++|++++.+++++++++|+.++......|+||||+.++++ .++  ....|+||+++.+.+ +.++|+||++++
T Consensus         3 w~g~~~~~v~~~~~~t~~~~~~~l~~~d~~~~~~~~pGQ~v~l~~~-~~~~~~~~~r~~s~ss~~~~-~~~~i~vk~~~~   80 (107)
T d1gvha2           3 WEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLK-PEGFPHQEIRQYSLTRKPDG-KGYRIAVKREEG   80 (107)
T ss_dssp             CSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEC-CTTCSSCEEEEEECCSCCCS-SCEEEEEECCTT
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEEcCCcCcccCCCCCCEEEEEee-ccccCceEEeeccccCCCCC-CceEEEEEEcCC
Confidence            4789999999999999999999999877655678999999999998 443  246799999987765 789999999999


Q ss_pred             Cccccccc-cCCCCCEEEEeccccee
Q 042788          129 GRMAHHFR-EMHEGEYLPVKGPKGRL  153 (258)
Q Consensus       129 G~~S~~L~-~l~~Gd~v~v~gP~G~f  153 (258)
                      |.+|+||+ ++++||+|.++||+|.|
T Consensus        81 G~~S~~l~~~l~~Gd~v~v~gP~G~F  106 (107)
T d1gvha2          81 GQVSNWLHNHANVGDVVKLVAPAGDF  106 (107)
T ss_dssp             CHHHHHHHHTCCTTCEEEEEEEECSC
T ss_pred             cchhHHHHhcCCCCCEEEEeCccccC
Confidence            99999996 89999999999999997

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.84  E-value=6.7e-21  Score=136.99  Aligned_cols=95  Identities=21%  Similarity=0.330  Sum_probs=85.5

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH  134 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~  134 (258)
                      .+++|++++.+++++++++|+.++....+.|+||||+.|+++   |....|+||+++.+.+ +.+++.|++.++|.+|+|
T Consensus         4 ~~~~v~~v~~lt~~v~~~~l~~~~~~~~~~f~pGQ~v~l~i~---g~~~~r~ys~~~~~~~-~~~~~~i~~~~~G~~s~~   79 (100)
T d1krha1           4 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLP---GTTETRSYSFSSQPGN-RLTGFVVRNVPQGKMSEY   79 (100)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECT---TSSCEEEEECCSCTTC-SEEEEEEECCTTCHHHHH
T ss_pred             EEEEEEEEEEcCCCeEEEEEEcCCCCcCCCCCCCEEEEEEEC---CcceeEEeeccCCCcc-CceEEEEEEeeCCchhhh
Confidence            479999999999999999999998755678999999999976   4456899999998866 789999999999999999


Q ss_pred             cc-cCCCCCEEEEeccccee
Q 042788          135 FR-EMHEGEYLPVKGPKGRL  153 (258)
Q Consensus       135 L~-~l~~Gd~v~v~gP~G~f  153 (258)
                      |+ .+++||+|.++||+|+|
T Consensus        80 l~~~l~~Gd~v~v~gP~G~F   99 (100)
T d1krha1          80 LSVQAKAGDKMSFTGPFGSF   99 (100)
T ss_dssp             HHTTCCTTCEEEEEEEECSC
T ss_pred             hhccCCCCCEEEEecccccc
Confidence            95 79999999999999996

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=143.50  Aligned_cols=108  Identities=44%  Similarity=0.797  Sum_probs=92.7

Q ss_pred             ccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEc
Q 042788          149 PKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLS  228 (258)
Q Consensus       149 P~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s  228 (258)
                      |.+.+.......++++||||||||||+++|++++++++...++++|+|++|+.+++++.+||++++++++.++++++.++
T Consensus         7 p~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~~~~~i~L~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~   86 (147)
T d1umka2           7 PDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD   86 (147)
T ss_dssp             SSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEES
T ss_pred             CCCCCCcccccCCeEEEEECCeecchHHHHHHHHHhcCCCCceEEEEEEeCccccchhHHHHhhhhhhcCcceEEEEEec
Confidence            34443323334689999999999999999999998876667789999999999999999999999999887799999999


Q ss_pred             CCCCCCCCccccccHHHHhhhCCCCCCC
Q 042788          229 QPTEVWNGGIGHVSKEMIQMHCPTPAPD  256 (258)
Q Consensus       229 ~~~~~~~~~~G~i~~~~l~~~~~~~~~~  256 (258)
                      ++.++|.+..|+++++.+++.+++...+
T Consensus        87 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~  114 (147)
T d1umka2          87 RAPEAWDYGQGFVNEEMIRDHLPPPEEE  114 (147)
T ss_dssp             SCCSSCSSEESSCCHHHHHHHSCCGGGC
T ss_pred             ccccCcccceeehHHHHHHHhcCCCcCC
Confidence            9999999999999999999988765543

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.82  E-value=5.7e-20  Score=132.58  Aligned_cols=96  Identities=19%  Similarity=0.344  Sum_probs=85.2

Q ss_pred             CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788           51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR  130 (258)
Q Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~  130 (258)
                      ...|.+++|++++.+++|+++++|+.++......|+||||+.|.++ . +  ..|+||++|.|.+.+.++|+||+.++|.
T Consensus         5 ~~~~~~~~V~~~~~~t~di~~~~l~~~~g~~lp~f~pGQ~v~v~~~-~-~--~~R~YSl~s~p~~~~~~~i~Vk~~~~g~   80 (103)
T d2piaa1           5 EDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVP-N-G--SRRTYSLCNDSQERNRYVIAVKRDSNGR   80 (103)
T ss_dssp             TTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECT-T-S--CEEEEECCSCTTCCSEEEEEEECCTTSC
T ss_pred             CCCeEEEEEEEEEEcCCCeEEEEEECCCCCcCCCCCCCceEEEEEe-c-c--eeEEEEEecCCCCCCEEEEEEEEECCCc
Confidence            4578899999999999999999999987754458999999999986 2 2  4699999999988899999999999998


Q ss_pred             c-ccccc-cCCCCCEEEEeccc
Q 042788          131 M-AHHFR-EMHEGEYLPVKGPK  150 (258)
Q Consensus       131 ~-S~~L~-~l~~Gd~v~v~gP~  150 (258)
                      + |.||+ ++++||+|.++||.
T Consensus        81 ~~S~~l~~~l~~Gd~v~v~~Pr  102 (103)
T d2piaa1          81 GGSISFIDDTSEGDAVEVSLPR  102 (103)
T ss_dssp             SHHHHHHHSCCTTCEEEECCCB
T ss_pred             cchHHHHhcCCCCCEEEEeCCc
Confidence            5 99996 89999999999996

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.82  E-value=6.4e-21  Score=139.26  Aligned_cols=101  Identities=27%  Similarity=0.419  Sum_probs=87.9

Q ss_pred             CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCC---ccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEE
Q 042788           48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKST---SILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVK  124 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~---~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk  124 (258)
                      .+......+++|++++.+++|+++++|+.|+..   ..+.|+||||+.|+++   |....|+||++|.|.+++.++|+||
T Consensus         4 ~~~~~~~~~a~V~~~~~lt~di~~l~l~~p~~~~~~~~~~f~pGQ~v~l~~~---g~~~~R~ySias~p~~~~~~~~~i~   80 (109)
T d1tvca1           4 SFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIP---GTDVSRSYSPANLPNPEGRLEFLIR   80 (109)
T ss_dssp             CSCCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTT---SCSSSEEECCBCCSSSSCCEEEEEC
T ss_pred             ecccceeEEEEEEEEEEeCCCeEEEEEECCCcccccccccCCCCcEEEEEEC---CccccccceeccCCcCCceeEEEEE
Confidence            344445668999999999999999999998642   2468999999999866   4556899999999988889999999


Q ss_pred             EecCCccccccc-cCCCCCEEEEecccc
Q 042788          125 MYPKGRMAHHFR-EMHEGEYLPVKGPKG  151 (258)
Q Consensus       125 ~~~~G~~S~~L~-~l~~Gd~v~v~gP~G  151 (258)
                      .+++|.+|+||+ ++++||+|.+.||+|
T Consensus        81 ~~~~G~~S~~l~~~l~~Gd~v~i~gP~G  108 (109)
T d1tvca1          81 VLPEGRFSDYLRNDARVGQVLSVKGPLG  108 (109)
T ss_dssp             CCTTSSSHHHHHHHSSSSSEEEEEEEEC
T ss_pred             EeCCchHHHHHHhhCCCCCEEEEeCCcc
Confidence            999999999995 799999999999998

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.82  E-value=1.3e-20  Score=135.72  Aligned_cols=97  Identities=11%  Similarity=0.061  Sum_probs=87.1

Q ss_pred             cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788           54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH  133 (258)
Q Consensus        54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~  133 (258)
                      ...++|++++.+++++++++|+.+..  ...++||||+.|+++ .++....|+||+++.+.+++.++|.++..+.|.+|.
T Consensus         4 ~~~~~V~~~~~~~~~i~~l~l~~~~~--~~~~~pGQfv~l~~~-~~~~~~~R~~Si~~~~~~~~~i~~~i~~~~~g~~t~   80 (101)
T d1ep3b1           4 QEMMTVVSQREVAYNIFEMVLKGTLV--DEMDLPGQFLHLAVP-NGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTY   80 (101)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEESGGG--GGCCSTTCEEEECCS-CTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHH
T ss_pred             CeeEEEEEEEEecCCEEEEEEECCCh--hhccCCCceEEEEcc-CCccEeeccceeeeCCCCCcEEEEEEeecCcchhhH
Confidence            35799999999999999999998764  256999999999998 566667899999999988899999999988889999


Q ss_pred             ccccCCCCCEEEEeccccee
Q 042788          134 HFREMHEGEYLPVKGPKGRL  153 (258)
Q Consensus       134 ~L~~l~~Gd~v~v~gP~G~f  153 (258)
                      +|+++++||+|.+.||+|++
T Consensus        81 ~l~~l~~Gd~v~v~GP~G~~  100 (101)
T d1ep3b1          81 KLSKLESGAKVDVMGPLGNG  100 (101)
T ss_dssp             HHHTCCTTCEEEEEEEESBC
T ss_pred             HHHhCCCCCEEEEecccCCC
Confidence            99999999999999999973

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.8e-21  Score=136.53  Aligned_cols=93  Identities=16%  Similarity=0.230  Sum_probs=78.4

Q ss_pred             EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788           55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH  134 (258)
Q Consensus        55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~  134 (258)
                      .+|+|.+++.+++++++++|+.++.   +.|+||||+.|.++ .   ..+|+||++|.|.+++.++|.||..++|.+|.+
T Consensus         3 l~~~V~~i~~lt~~v~~~~l~~~~~---~~f~~GQ~v~l~~~-~---~~~r~ySias~p~~~~~l~l~ir~~~~g~~s~~   75 (97)
T d1qfja1           3 LSCKVTSVEAITDTVYRVRIVPDAA---FSFRAGQYLMVVMD-E---RDKRPFSMASTPDEKGFIELHIGASEINLYAKA   75 (97)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEESSC---CCCCTTCEEEEESS-S---SCEEEEECCSCTTSTTCEEEEEC------CCHH
T ss_pred             EEEEEEEEEEcCCCEEEEEEeCCcc---CccCCCCEEEEEEc-C---CCcEEEEEEEcCCCCcEEEEEEeEccCCchhHh
Confidence            5899999999999999999998764   78999999999876 2   246999999999888999999999999999999


Q ss_pred             c-ccCCCCCEEEEecccceee
Q 042788          135 F-REMHEGEYLPVKGPKGRLK  154 (258)
Q Consensus       135 L-~~l~~Gd~v~v~gP~G~f~  154 (258)
                      | +.+++||+|.++||+|++.
T Consensus        76 l~~~l~~G~~v~v~gP~G~~~   96 (97)
T d1qfja1          76 VMDRILKDHQIVVDIPHGEAW   96 (97)
T ss_dssp             HHHHHHHHSEEEEEEEECSCC
T ss_pred             HhhcCCCCCEEEEeccCCceE
Confidence            9 5799999999999999864

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.79  E-value=1.1e-19  Score=138.63  Aligned_cols=96  Identities=21%  Similarity=0.326  Sum_probs=86.3

Q ss_pred             eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCC
Q 042788          153 LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTE  232 (258)
Q Consensus       153 f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~  232 (258)
                      |.++.+..+++|||||||||||+++|++++.+++ ...+++|+|++|+.+|++|.+||++|++++|+ ++++.+++++++
T Consensus         1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~-~~~~~~~~~~~~   78 (141)
T d1tvca2           1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGVNTEPELFYIDELKSLERSMRN-LTVKACVWHPSG   78 (141)
T ss_dssp             CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEECSSSTTCCCHHHHHHHHHHSSS-CEEEECCSSCSS
T ss_pred             CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcC-CCCceEEEeecccchhhhhHHHHHHHHhhccc-cccceeeccccc
Confidence            5667777789999999999999999999998874 45789999999999999999999999999998 999999999999


Q ss_pred             CCCCccccccHHHHhhhC
Q 042788          233 VWNGGIGHVSKEMIQMHC  250 (258)
Q Consensus       233 ~~~~~~G~i~~~~l~~~~  250 (258)
                      +|.+..|++++.+.+...
T Consensus        79 ~~~~~~g~~~~~~~~~~~   96 (141)
T d1tvca2          79 DWEGEQGSPIDALREDLE   96 (141)
T ss_dssp             CCSSSSSSSSHHHHHHHH
T ss_pred             CcCCccchhHHHHHHhcc
Confidence            999999999987666543

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.74  E-value=2.2e-18  Score=129.94  Aligned_cols=92  Identities=21%  Similarity=0.320  Sum_probs=78.8

Q ss_pred             CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcc
Q 042788          159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGI  238 (258)
Q Consensus       159 ~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~  238 (258)
                      ..+++|||||||||||+++|++++..++ ...+++|+|++|+.++++|.+||+++++++|+ +++..++++++ +|.+..
T Consensus         4 ~~rplv~IAgG~GItP~~s~l~~~~~~~-~~~~i~l~~~~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~-~~~~~~   80 (133)
T d1krha2           4 VKRPVLMLAGGTGIAPFLSMLQVLEQKG-SEHPVRLVFGVTQDCDLVALEQLDALQQKLPW-FEYRTVVAHAE-SQHERK   80 (133)
T ss_dssp             CSSCEEEEEEGGGHHHHHHHHHHHHHHC-CSSCEEEEEEESSGGGCCCHHHHHHHHHHCTT-EEEEEEETTCC-SSSSEE
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHcC-CCCceEEEEeecchhHHHHHHHHHHHHHhCCc-eeeeeeeeccc-cccccc
Confidence            4578999999999999999999998874 45789999999999999999999999999998 99999999865 455778


Q ss_pred             ccccHHHHhhhCCCC
Q 042788          239 GHVSKEMIQMHCPTP  253 (258)
Q Consensus       239 G~i~~~~l~~~~~~~  253 (258)
                      |++++.+.++.++..
T Consensus        81 g~v~~~i~~~~~~~~   95 (133)
T d1krha2          81 GYVTGHIEYDWLNGG   95 (133)
T ss_dssp             SCSGGGCCGGGGGGG
T ss_pred             chhHHHHHHhhcccc
Confidence            898887666655433

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.2e-17  Score=124.45  Aligned_cols=91  Identities=23%  Similarity=0.392  Sum_probs=81.9

Q ss_pred             CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCc
Q 042788          158 GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGG  237 (258)
Q Consensus       158 ~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~  237 (258)
                      +..+++|||||||||||++|++++++..+ ...+++|+|++|+.++++|.+++.++..++++ +.+.++.++++++|.+.
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~   80 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYDLCELEALSLKHPG-LQVVPVVEQPEAGWRGR   80 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTTHHHHHHHHHHCTT-EEEEEEESSCCTTCCSE
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHcc-cccceeEEEecccHhHHHHHHHHHHHHHhcCc-cceeeeecccCcccccc
Confidence            45689999999999999999999998864 45789999999999999999999999999998 99999999988899999


Q ss_pred             cccccHHHHhhhC
Q 042788          238 IGHVSKEMIQMHC  250 (258)
Q Consensus       238 ~G~i~~~~l~~~~  250 (258)
                      .|+++++++++..
T Consensus        81 ~g~~~~~~~~~~~   93 (135)
T d1qfja2          81 TGTVLTAVLQDHG   93 (135)
T ss_dssp             ESCHHHHHHHHCS
T ss_pred             cCchHHHHHHhcc
Confidence            9999998776654

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.70  E-value=9.7e-17  Score=122.06  Aligned_cols=106  Identities=43%  Similarity=0.797  Sum_probs=87.1

Q ss_pred             ceeeecC--CCCceEEEEEcCccHHHHHHHHHHHHhCC-CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEE
Q 042788          151 GRLKYKV--GQARAFGMIAGGTGITPMFQLTRAILENP-KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVL  227 (258)
Q Consensus       151 G~f~~~~--~~~~~vvliagGtGItp~~sil~~l~~~~-~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~  227 (258)
                      |+|.++.  ...+++|||||||||||++|+++++.+.+ .+..+++|+|++|+.+++++.+++.++.+.+++++.+.++.
T Consensus         1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (146)
T d2cnda2           1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVI   80 (146)
T ss_dssp             SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred             CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCCccCceEEEEEeecccccchhHHHHhhHHHhCCCceeEEEee
Confidence            6777743  34579999999999999999999998764 34578999999999999999999999999999866666665


Q ss_pred             cCC---CCCCCCccccccHHHHhhhCCCCCCC
Q 042788          228 SQP---TEVWNGGIGHVSKEMIQMHCPTPAPD  256 (258)
Q Consensus       228 s~~---~~~~~~~~G~i~~~~l~~~~~~~~~~  256 (258)
                      +..   .+.|.+..|+++.+.+++.+++...+
T Consensus        81 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  112 (146)
T d2cnda2          81 DQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD  112 (146)
T ss_dssp             SCCSCGGGCCCSEESSCCHHHHHHHSCCCSSS
T ss_pred             ccccCcccccccccCccchHHHHHhcccCCCC
Confidence            433   35677889999999999998776544

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.69  E-value=4.2e-17  Score=122.75  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=85.6

Q ss_pred             CCCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEecCC---CCeeeeeccccccCCC----
Q 042788           48 SLDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKDSE---GNEVIRPYTPITLDSD----  115 (258)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~---g~~~~R~ySi~s~~~~----  115 (258)
                      ..++.....++|++++.+++     ++++++++.+..  .+.|.||||+.|..+..+   +....|.|||+|.+.+    
T Consensus         6 ~~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~--~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~   83 (133)
T d2bmwa1           6 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG--NLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVD   83 (133)
T ss_dssp             SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS--CCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTS
T ss_pred             ccCCCCCeEEEEEEEEEccCCCCCceEEEEEEccCCc--cCCccCCCEEEEEeccccccccccceeeeeecCCCcCCCCC
Confidence            34556656999999999975     499999998765  488999999999887221   2346799999999853    


Q ss_pred             CCEEEEEEEEe----------cCCccccccccCCCCCEEEEecccceee
Q 042788          116 IGYFELVVKMY----------PKGRMAHHFREMHEGEYLPVKGPKGRLK  154 (258)
Q Consensus       116 ~~~l~~~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~  154 (258)
                      .+.++++||+.          +.|.+|+||+++++||+|.+.||+|+|.
T Consensus        84 ~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD~v~v~GP~G~~f  132 (133)
T d2bmwa1          84 DKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEM  132 (133)
T ss_dssp             SSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSS
T ss_pred             ccEEEEEEEeccccccccCCCCCcEehhhHhhCCCCCEEEEeCCcccee
Confidence            35799999975          3599999999999999999999999964

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.67  E-value=1.2e-16  Score=120.38  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEecC--CC-CeeeeeccccccCCC----C
Q 042788           49 LDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKDS--EG-NEVIRPYTPITLDSD----I  116 (258)
Q Consensus        49 ~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g-~~~~R~ySi~s~~~~----~  116 (258)
                      ..+.....++|+++..++.     +++.|.++.+..   +.|.||||+.|.++..  .+ ....|.|||+|+|.+    .
T Consensus        14 y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~~---~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~   90 (136)
T d1fnda1          14 FKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDA   90 (136)
T ss_dssp             BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSS
T ss_pred             ecCCCCeEEEEEeEEEccCCCCCceEEEEecccCCC---CcccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCC
Confidence            3445556899999999974     699999998654   8899999999988621  22 246799999999853    4


Q ss_pred             CEEEEEEEEe---------cCCccccccccCCCCCEEEEecccce
Q 042788          117 GYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGR  152 (258)
Q Consensus       117 ~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~  152 (258)
                      +.++++||++         +.|.+|+||++|++||+|.++||+|+
T Consensus        91 ~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD~V~v~GP~Gk  135 (136)
T d1fnda1          91 KSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK  135 (136)
T ss_dssp             CEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECS
T ss_pred             cEEEEEEEEeecccCCCcCCCceEehhhccCCCcCEEEEeCCCCC
Confidence            6799999975         36999999999999999999999996

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.58  E-value=5.3e-15  Score=114.14  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=75.9

Q ss_pred             ecCCCCceEEEEEcCccHHHHHHHHHHHHhCC----CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788          155 YKVGQARAFGMIAGGTGITPMFQLTRAILENP----KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP  230 (258)
Q Consensus       155 ~~~~~~~~vvliagGtGItp~~sil~~l~~~~----~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~  230 (258)
                      ++.+..+++|||||||||||++||++++..+.    ....++.|+|++|+.+|++|.+|+.++.+++++.+.+.++.+++
T Consensus         3 LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~s~~   82 (160)
T d1fnda2           3 MPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSRE   82 (160)
T ss_dssp             CBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTT
T ss_pred             CCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHHHHHHHHHHHHHHHhcCCceeEEEEEccc
Confidence            34556789999999999999999999997642    23468999999999999999999999999988878899999988


Q ss_pred             CCCCCCccccccHHH
Q 042788          231 TEVWNGGIGHVSKEM  245 (258)
Q Consensus       231 ~~~~~~~~G~i~~~~  245 (258)
                      ...+.+..++++...
T Consensus        83 ~~~~~~~~~~~~~~~   97 (160)
T d1fnda2          83 QTNEKGEKMYIQTRM   97 (160)
T ss_dssp             CBCTTCCBCCHHHHH
T ss_pred             hhccCCCcceehhhH
Confidence            777776666665543

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3e-15  Score=113.58  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=75.1

Q ss_pred             CceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCC-----C
Q 042788          160 ARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEV-----W  234 (258)
Q Consensus       160 ~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~-----~  234 (258)
                      .+++|||||||||||++++++++...+ ...+++++|++|+.++++|.+++.++.+++|+ ++++.+++++.+.     +
T Consensus         6 d~plv~IagGtGiaP~~s~l~~l~~~~-~~~~i~l~~~~r~~~d~~~~~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (143)
T d1gvha3           6 DTPVTLISAGVGQTPMLAMLDTLAKAG-HTAQVNWFHAAENGDVHAFADEVKELGQSLPR-FTAHTWYRQPSEADRAKGQ   83 (143)
T ss_dssp             TCCEEEEEEGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCTTTCCSHHHHHHHHHTSSS-EEEEEEESSCCHHHHHHTC
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHcC-CCceEEEEeecCCHHHHHHHHHHHHHHHhCCc-eEEEEEEeccCcccccccc
Confidence            478999999999999999999998875 45789999999999999999999999999998 9999999877532     2


Q ss_pred             CCccccccHHHHhhhCCC
Q 042788          235 NGGIGHVSKEMIQMHCPT  252 (258)
Q Consensus       235 ~~~~G~i~~~~l~~~~~~  252 (258)
                      ....|+++.+.+.+..+.
T Consensus        84 ~~~~~~~~~~~l~~~~~~  101 (143)
T d1gvha3          84 FDSEGLMDLSKLEGAFSD  101 (143)
T ss_dssp             CSEESSCCGGGSSSCCCC
T ss_pred             eeeeccccHHHHHhcccc
Confidence            334567776655544433

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.5e-15  Score=114.67  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             CceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccc
Q 042788          160 ARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIG  239 (258)
Q Consensus       160 ~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G  239 (258)
                      .+++|||||||||||++||++++...+ ...++.++|++|+.+|++|.++|+++.+++++ +.+..++...++.+.+..|
T Consensus         6 ~k~lvlIa~GtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (148)
T d1fdra2           6 CETLWMLATGTAIGPYLSILRLGKDLD-RFKNLVLVHAARYAADLSYLPLMQELEKRYEG-KLRIQTVVSRETAAGSLTG   83 (148)
T ss_dssp             CSEEEEEEEGGGGHHHHHHHHHCCSCT-TCSEEEEEEEESSGGGCTTHHHHHHHHHHTTT-SEEEEEEESSSCCTTEEES
T ss_pred             CCEEEEEEcCeEHHHHHHHHHHHHHhC-CCCcEEEEEecCcHHHHHHHHHhhhHHHhccc-cccccccccCccccccccc
Confidence            479999999999999999999987764 56899999999999999999999999999998 5555444433444444444


Q ss_pred             ccc
Q 042788          240 HVS  242 (258)
Q Consensus       240 ~i~  242 (258)
                      +.+
T Consensus        84 ~~~   86 (148)
T d1fdra2          84 RIP   86 (148)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            443

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.56  E-value=5.7e-15  Score=111.84  Aligned_cols=91  Identities=21%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCC--
Q 042788          158 GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWN--  235 (258)
Q Consensus       158 ~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~--  235 (258)
                      +..+++|||||||||||+++|++++..+.  .++++|+|++|+.+++++.+++.++.+++++ ++++.+++++.+.+.  
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~--~~~i~li~~~r~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP--PRQVVFVHGARNSAVHAMRDRLREAAKTYEN-LDLFVFYDQPLPEDVQG   79 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS--CCCEEEEEEESCSSSCHHHHHHHHHHHHCTT-EEEEEEESSCCTTCCBT
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC--CCcEEEEeeccChhhhhhHHHHHHHHHhCCC-eEEEEEEcccCCccccc
Confidence            34578999999999999999999987653  4689999999999999999999999999998 999999998754322  


Q ss_pred             ---CccccccHHHHhhhCC
Q 042788          236 ---GGIGHVSKEMIQMHCP  251 (258)
Q Consensus       236 ---~~~G~i~~~~l~~~~~  251 (258)
                         ...++...+.+.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~   98 (142)
T d1cqxa3          80 RDYDYPGLVDVKQIEKSIL   98 (142)
T ss_dssp             TTBSEESSCCGGGSHHHHC
T ss_pred             ccccchhhhHHHHHHhhcc
Confidence               2344555554544433

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.54  E-value=2.1e-14  Score=110.03  Aligned_cols=85  Identities=22%  Similarity=0.310  Sum_probs=68.4

Q ss_pred             CceEEEEEcCccHHHHHHHHHHHHhC----CCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCC
Q 042788          160 ARAFGMIAGGTGITPMFQLTRAILEN----PKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWN  235 (258)
Q Consensus       160 ~~~vvliagGtGItp~~sil~~l~~~----~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~  235 (258)
                      .+++|||||||||||++||++++..+    .....++.|+|++|+..|++|.+|+.++.++++.++....+.+++.++|.
T Consensus         3 ~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (154)
T d1jb9a2           3 NATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRS   82 (154)
T ss_dssp             TCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTCC---
T ss_pred             CCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccchhHHHHHHHHHHHhCCCCEEEEEEeccCCcCcC
Confidence            47999999999999999999999853    22346799999999999999999999999998887888888888777766


Q ss_pred             CccccccHH
Q 042788          236 GGIGHVSKE  244 (258)
Q Consensus       236 ~~~G~i~~~  244 (258)
                      ...+++...
T Consensus        83 ~~~~~~~~~   91 (154)
T d1jb9a2          83 GGKMYVQDK   91 (154)
T ss_dssp             -CCCCHHHH
T ss_pred             CcccccchH
Confidence            666655554

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=3.8e-14  Score=109.66  Aligned_cols=78  Identities=21%  Similarity=0.289  Sum_probs=64.6

Q ss_pred             cCCCCceEEEEEcCccHHHHHHHHHHHH---hCCCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCCCeEEEEEEcCCC
Q 042788          156 KVGQARAFGMIAGGTGITPMFQLTRAIL---ENPKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNRFKVYYVLSQPT  231 (258)
Q Consensus       156 ~~~~~~~vvliagGtGItp~~sil~~l~---~~~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~  231 (258)
                      +.+...++||||+||||||++|++++..   .++....+++|+|++|+.+ |++|.+||+.+.+.+++ ++++.++|+++
T Consensus         3 P~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~Sr~~   81 (160)
T d1ja1a3           3 PFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGAL-TQLNVAFSREQ   81 (160)
T ss_dssp             CSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS-SEEEEEETTSS
T ss_pred             CcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCC-ceeEEEeeccc
Confidence            3455689999999999999999998743   3333456899999999865 79999999999998888 89999999876


Q ss_pred             CCC
Q 042788          232 EVW  234 (258)
Q Consensus       232 ~~~  234 (258)
                      +..
T Consensus        82 ~~~   84 (160)
T d1ja1a3          82 AHK   84 (160)
T ss_dssp             SSC
T ss_pred             cCc
Confidence            544

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.50  E-value=9.4e-14  Score=106.97  Aligned_cols=87  Identities=28%  Similarity=0.408  Sum_probs=71.5

Q ss_pred             cCCCCceEEEEEcCccHHHHHHHHHHHHhC--------CCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEE
Q 042788          156 KVGQARAFGMIAGGTGITPMFQLTRAILEN--------PKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVL  227 (258)
Q Consensus       156 ~~~~~~~vvliagGtGItp~~sil~~l~~~--------~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~  227 (258)
                      +.+..+++||||||||||||+|+++++..+        .....++.|+|++|+.+|++|.+|+.++..+++.++.+++..
T Consensus         2 P~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~~~~~~~~~~~~~~~~   81 (162)
T d2bmwa2           2 PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAI   81 (162)
T ss_dssp             CSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred             CcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            345568999999999999999999998742        123457999999999999999999999999999878888888


Q ss_pred             cCCCCCCCCcccccc
Q 042788          228 SQPTEVWNGGIGHVS  242 (258)
Q Consensus       228 s~~~~~~~~~~G~i~  242 (258)
                      ++..+.+.+..++.+
T Consensus        82 ~~~~~~~~~~~~~~~   96 (162)
T d2bmwa2          82 SREQKNPQGGRMYIQ   96 (162)
T ss_dssp             TTTCBCTTSSBCCHH
T ss_pred             ecccccccCCcchhh
Confidence            887777766555444

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.4e-14  Score=109.65  Aligned_cols=79  Identities=16%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             cCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeC-CCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCC
Q 042788          156 KVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANV-TVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVW  234 (258)
Q Consensus       156 ~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r-~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~  234 (258)
                      +.+..+++|||||||||||++||++++..+.. ..++.++|+++ +.++++|.+|++++.+++++ ++++++++++.+.+
T Consensus         2 P~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~-~~~~~~~s~~~~~~   79 (153)
T d1ddga2           2 PANPETPVIMIGPGTGIAPFRAFMQQRAADEA-PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVL-TRIDLAWSRDQKEK   79 (153)
T ss_dssp             CSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC-CSCEEEEEEESCHHHHCTTHHHHHHHHHTTSC-CEEEEEETTSSSSC
T ss_pred             CcCCCCCEEEEECchhHHHHHHHHHHHHHhcC-CCceEEeecccCcHHHHHhHHHHHHHHHcCCC-ceEEEEEEecccCc
Confidence            34556789999999999999999999887643 34566666665 55678899999999999888 99999999887655


Q ss_pred             CC
Q 042788          235 NG  236 (258)
Q Consensus       235 ~~  236 (258)
                      ..
T Consensus        80 ~~   81 (153)
T d1ddga2          80 VY   81 (153)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.44  E-value=3.8e-13  Score=103.10  Aligned_cols=105  Identities=13%  Similarity=0.127  Sum_probs=83.8

Q ss_pred             CCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEecC-----CCCeeeeeccccccCC----
Q 042788           49 LDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKDS-----EGNEVIRPYTPITLDS----  114 (258)
Q Consensus        49 ~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~-----~g~~~~R~ySi~s~~~----  114 (258)
                      ..+..-..++|++++.++.     +++.+.+..+.   .+.|.|||++.|..+..     ......|.|||+|++.    
T Consensus        23 y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~---~~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~~~~   99 (157)
T d1jb9a1          23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNF   99 (157)
T ss_dssp             BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT---SSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTT
T ss_pred             CCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCC---CccEecCceEEEEcCCccccccCccCCcCEEEecCCCcCCCC
Confidence            3444445899999999985     79999999965   38999999999987621     1234689999999984    


Q ss_pred             CCCEEEEEEEEe-------------cCCccccccccCCCCCEEEEecccce-eeec
Q 042788          115 DIGYFELVVKMY-------------PKGRMAHHFREMHEGEYLPVKGPKGR-LKYK  156 (258)
Q Consensus       115 ~~~~l~~~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~gP~G~-f~~~  156 (258)
                      +.+.+.++|+..             ..|.+|.||+++++||+|.+.||.|. |.++
T Consensus       100 ~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd~V~i~gp~g~~F~lP  155 (157)
T d1jb9a1         100 DGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLP  155 (157)
T ss_dssp             SSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTCEEEEEEEECSTTCCC
T ss_pred             CCCEEEEEEEEeeccccccccCCcccCceeehhhccCCCcCEEEEEecCCCcccCC
Confidence            335789999864             25889999999999999999999998 6554

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=4.1e-13  Score=104.07  Aligned_cols=83  Identities=12%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             eeeecCCCCceEEEEEcCccHHHHHHHHHHHHh----CCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEE
Q 042788          152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILE----NPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYV  226 (258)
Q Consensus       152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~----~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~  226 (258)
                      +|.++.+..+++|||||||||||++||+++...    ++....++.++|++++. ++++|.+|++++.+.+++ +.++++
T Consensus         1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~   79 (165)
T d1f20a2           1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF-RELYTA   79 (165)
T ss_dssp             TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSE-EEEEEE
T ss_pred             CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCc-eEEEEE
Confidence            366766777899999999999999999987542    12233456666666655 467899999999988887 999999


Q ss_pred             EcCCCCCCC
Q 042788          227 LSQPTEVWN  235 (258)
Q Consensus       227 ~s~~~~~~~  235 (258)
                      ++++++.+.
T Consensus        80 ~sr~~~~~~   88 (165)
T d1f20a2          80 YSREPDRPK   88 (165)
T ss_dssp             ESSCTTSCC
T ss_pred             EeccccCCC
Confidence            998876554

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.39  E-value=2.9e-13  Score=99.24  Aligned_cols=72  Identities=25%  Similarity=0.355  Sum_probs=58.5

Q ss_pred             eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcC
Q 042788          153 LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQ  229 (258)
Q Consensus       153 f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~  229 (258)
                      |.++. ..+++|||||||||||+++|++++.+++  ..+++++|++|+.++++|.+++++++.. ++ +.++...++
T Consensus         2 F~l~~-~~~~~v~IagGtGiaP~~s~~~~l~~~~--~~~~~l~~~~r~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~   73 (120)
T d2piaa2           2 FPLDK-RAKSFILVAGGIGITPMLSMARQLRAEG--LRSFRLYYLTRDPEGTAFFDELTSDEWR-SD-VKIHHDHGD   73 (120)
T ss_dssp             SCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC--SSEEEEEEEESCGGGCTTHHHHHSTTTT-TT-EEEEECTTC
T ss_pred             CCCCC-CCCCEEEEEecccHHHHHHHHHHHHHhc--CCCeEEEEeeCCHHHhhhhHHHHHHhhC-CC-eEEeeecCC
Confidence            66654 5589999999999999999999998764  3689999999999999999999998754 34 665544333

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.26  E-value=3.6e-12  Score=98.20  Aligned_cols=75  Identities=16%  Similarity=0.349  Sum_probs=59.4

Q ss_pred             CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcc
Q 042788          159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGI  238 (258)
Q Consensus       159 ~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~  238 (258)
                      ..++++|||||+||||+++|++++.+++   .+++++|++|+.++++|.+||+++..     ..++...+   +++.+..
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~~---~~v~l~~g~r~~~~~~~~~el~~~~~-----~~~~~~~~---~~~~~~~   75 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKILENEFSNLKN-----VTLKIATD---DGSYGTK   75 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCCHHHHHTSTT-----EEEEEEET---TCSSSEE
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhcc---CceEEEEecCCHHHHHHHHHHHHhhC-----CCcccccc---Ccccccc
Confidence            3468999999999999999999998765   68999999999999999999988753     44444443   3344556


Q ss_pred             ccccHH
Q 042788          239 GHVSKE  244 (258)
Q Consensus       239 G~i~~~  244 (258)
                      |++.+.
T Consensus        76 g~v~~~   81 (160)
T d1ep3b2          76 GHVGML   81 (160)
T ss_dssp             SCHHHH
T ss_pred             ccHHHH
Confidence            777663

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.23  E-value=1.8e-12  Score=99.34  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCC-------eEEEEEEcCCC
Q 042788          159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR-------FKVYYVLSQPT  231 (258)
Q Consensus       159 ~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~-------~~v~~~~s~~~  231 (258)
                      +.+++|||||||||||++||++++..++ ...+++++|++|+.++.++.++|..+....++.       +.+....++..
T Consensus         6 p~~~lvlIagGtGIaP~~sil~~~~~~~-~~~~~~l~~g~r~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (158)
T d1a8pa2           6 PGKHLYMLSTGTGLAPFMSLIQDPEVYE-RFEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTRES   84 (158)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHTTCHHHHH-HCSEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSC
T ss_pred             CCCCEEEEEchhhHHHHHHHHHHHHHhC-CCCceeeeeccccHHHHhhHHHHHHHHhhhhhhhhccccceEEEEeccccc
Confidence            3579999999999999999999887653 347999999999999999999999887766531       45566666655


Q ss_pred             CCCCC
Q 042788          232 EVWNG  236 (258)
Q Consensus       232 ~~~~~  236 (258)
                      ..+.+
T Consensus        85 ~~~~~   89 (158)
T d1a8pa2          85 FHNQG   89 (158)
T ss_dssp             CSSBS
T ss_pred             ccccc
Confidence            55544

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00035  Score=55.24  Aligned_cols=44  Identities=14%  Similarity=0.099  Sum_probs=35.5

Q ss_pred             eeeccccccCC-CCCEEEEEEEEec--------CCccccccc-cCCCCCEEEEe
Q 042788          104 IRPYTPITLDS-DIGYFELVVKMYP--------KGRMAHHFR-EMHEGEYLPVK  147 (258)
Q Consensus       104 ~R~ySi~s~~~-~~~~l~~~Vk~~~--------~G~~S~~L~-~l~~Gd~v~v~  147 (258)
                      +|.|||+|+|. .++.++++|...+        .|.+|+||. .+++||+|.+.
T Consensus       160 PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~r~GvcS~~L~~~l~~g~~V~v~  213 (221)
T d1ddga1         160 PRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVF  213 (221)
T ss_dssp             CEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEE
T ss_pred             ceeeeeccccccCCCeeeEEEEEEEeeCCCCccceecHHHHHhhCCCCCEEEEE
Confidence            49999999984 4578999886542        588999996 69999998765

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=0.00039  Score=56.65  Aligned_cols=45  Identities=13%  Similarity=0.161  Sum_probs=36.3

Q ss_pred             eeeeccccccCC-CCCEEEEEEEEec-----------CCccccccccCCCCCEEEEe
Q 042788          103 VIRPYTPITLDS-DIGYFELVVKMYP-----------KGRMAHHFREMHEGEYLPVK  147 (258)
Q Consensus       103 ~~R~ySi~s~~~-~~~~l~~~Vk~~~-----------~G~~S~~L~~l~~Gd~v~v~  147 (258)
                      .+|.|||+|+|. .++.++++|....           .|-+|.||+++++||+|.+.
T Consensus       209 ~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd~v~v~  265 (270)
T d1f20a1         209 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCF  265 (270)
T ss_dssp             CCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEE
T ss_pred             ccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCCEEEEE
Confidence            369999999984 4678999887531           47789999999999998763

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.16  E-value=0.021  Score=46.15  Aligned_cols=47  Identities=13%  Similarity=0.220  Sum_probs=36.2

Q ss_pred             CCCCCCCCcEEEEEEEEEEeCC----CEeEEEEECCCCCccCCCCCCcEEEEE
Q 042788           46 RGSLDPENFKEFKLTKRTPISH----NTAKFRFALPKSTSILGLPVGQHILCR   94 (258)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~~~----~~~~l~l~~~~~~~~~~~~pGQ~v~l~   94 (258)
                      +...+...-..++|++++.+++    +++.++|++++.  ...|+||+++.|.
T Consensus        34 ~~~y~~~nP~~A~v~~n~~L~~~s~k~~~Hie~dl~~s--~l~Y~~GD~l~V~   84 (279)
T d1ja1a1          34 KPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDS--KIRYESGDHVAVY   84 (279)
T ss_dssp             CSSCBTTBCEEEEEEEEEECCSSSSSCEEEEEEECTTS--CCCCCTTCEEEEC
T ss_pred             CCCCCCCCCEEeEEEEEEEeCCCCCccEEEEEEEcCCC--CceecCCCEEEEE
Confidence            3444444455899999999965    499999999865  4899999999885