Citrus Sinensis ID: 042790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------
Protein Sequence
MALEAFSDSKYQLAFSSGVLNQVTGDTMQPSSSNHLLQNDGQYRAAVASLLNASSGNLSGSAANINEGMVTGLRNQTIVQETTNYRLSRFSSLLPNSSSAISMGPQSHRSASADVYSYLNLPPLPVFSSHSSSSTGSSNTDGSSTLQQTSHLGINSSQPRKRKQQQRGLSATSPPDLHRRQGESSNDKKLDICASTEMQKKPRLNTLQLGSKSEQQNILHSTPEFGAVDIDKMQQQQMRHHQLQQPMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLLRHNSFNPKLSKVKQEPSLSYKS
Secondary Structure (PSIPRED)
cccccccccccEEEEccccHHHHHcccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHcccccHHHHccccccHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccccccccccccEEEccccccccHHHccccccEEEEEEEccccEEEcccccEEEEEccEEEEEEEEccEEEEEEEEEEEEcccccEEEEEEEEccEEEcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHccHHHHcccccccccccccccccccccccEEEEEEHHHHHcHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccHHHHHEccccccccccccEEccccccEEccccccHHHHccccccccccccccccccccccccccccccEEcEccccccccccHcEccccccccccccccccccccccccccccccccEccccccccccccccccEEEEcccccccccccHHHHHHHcccccccccHHHHHcccccccHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccEEEEEEEEEcccccEEEccccccccccEEcccccccccccEEEcHHHHHHHHEEEEccccEEEEEEEccccccccccccEEEEcccEEEEEEEccEEEEEEEEEEEEEcccccEEEEEEEEccccEcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maleafsdskyQLAFSSGVlnqvtgdtmqpsssnhllqnDGQYRAAVASLLNassgnlsgsaaninegmVTGLRNQTIVQETTNYRLSRFssllpnsssaismgpqshrsasadvysylnlpplpvfsshsssstgssntdgsstlqqtshlginssqprkrkqqqrglsatsppdlhrrqgessndkkldicastemqkkprlntlqlgskseqqnilhstpefgavdIDKMQQQQMRhhqlqqpmhqvpaayALHSGVCSRRIMQYMYHlrhrpsengIAYWRKFVAEYYapcakkrwcfsmydnaghhafgffpkaavdawqcdlcgtkpgrgfeanleafpRLNKVMFESgvidellyldmphervqfSGLMILEYGKAVQETVFEQCRVVregklrivftpdlKILSWEFCAWQheeflprnlvapqVNQLVQTAQKYEStiysgsdgatphnlqANCNMFLVAGCQLARNTEldlvddlgfpkrYVRSLQIAEIVNSMKDLISFslnsntgpieslknycceasgskplkdesleKRSAQDLLNDGrklvaaspildnsendsssftgcgplascegatlspgyYERLLrhnsfnpklskvkqepslsyks
Flexible Loop (DISEMBL)
maleafsdskyQLAFSSGVLNQVTGDTMQPSSSNHLLQNDGQYRAAVASLLNASSGNLSGSAANINEGMVTGLRNQTIVQETTNYRLSRFSSLLPNSSSAISMGPQSHRSASADVYSYLNLPPLPVFSSHSSSSTGSSNTDGSSTLQQTShlginssqprkrkqqqrglsatsppdlhrrqgessndkklDICASTEMQKKPRLNTLQLGSKSEQQNILHSTPEFGAVDIDKMQQQQMRHHQLQQPMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASgskplkdeslEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLLRHnsfnpklskvkqepslsyks
Low Complexity Region (SEG)
MALEAFSDSKYQLAFSSGVLNQVTGDTMQPSSSNHLLQNDGQYRaavasllnassgnlsgsaanINEGMVTGLRNQTIVQETTNYRlsrfssllpnsssaisMGPQSHRSASADVYSYLNLPPLPVFsshsssstgssntdgsstLQQTSHLGINSSQPrkrkqqqrGLSATSPPDLHRRQGESSNDKKLDICASTEMQKKPRLNTLQLGSKSEQQNILHSTPEFGAVDIDKmqqqqmrhhqlqqpmhqVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLLRHNSFNPKLSKVKQEPSLSYKS
Disordered region (IsUnstruct)
*******************************************************************GMVTGLRNQTIVQETTNYRL****************************YSYLN*********************************************************************************************************************************VPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCC***********************************************CGPLASCEGATLSPGYYERLLR*********************
Disordered Region (DISOPRED)
*******DSKYQLAFSSGV**************************************************************************************************************************************************************************************************************************************************SRRIMQ**************AYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVN**************************************************LGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESL***********************************************************************************************
Disordered Region (DISEMBL)
********SKYQLAFSSGVLNQVTGDTMQPSSSNHLLQNDGQYRAAVASLLNASSGNLSGSAANINEGMVTGLRNQTIVQETTNYRLSRFSSLLPNS**************SADVYSYLNLPPLPVF************************************************************KKLDICASTEMQKKPRLNTLQLGSKSEQQNILHSTPEFGAVDIDK*************PMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLLRHNSFNPKL*************
Disordered Region (DISPRO)
MALEAFSDSKYQLAFS***********************DGQYRAAVASL******************MVTGLRNQTIV**TT*****************I***************SYLNLPPLPVFS*****************LQ***********************************ESSNDKKLDICASTEMQKKPRLNTLQLGSKSEQQNILHSTPEFGAVDIDKMQQQQMRHHQLQQPMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYE***************************QLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEAS***************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALEAFSDSKYQLAFSSGVLNQVTGDTMQPSSSNHLLQNDGQYRAAVASLLNASSGNLSGSAANINEGMVTGLRNQTIVQETTNYRLSRFSSLLPNSSSAISMGPQSHRSASADVYSYLNLPPLPVFSSHSSSSTGSSNTDGSSTLQQTSHLGINSSQPRKRKQQQRGLSATSPPDLHRRQGESSNDKKLDICASTEMQKKPRLNTLQLGSKSEQQNILHSTPEFGAVDIDKMQQQQMRHHQLQQPMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLLRHNSFNPKLSKVKQEPSLSYKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	617	2.2.26 [Sep-21-2011]
Q8W234	877	Transcriptional corepress	no	no	0.471	0.331	0.525	2e-88
O74364	391	Adhesion defective protei	yes	no	0.376	0.593	0.233	5e-08

>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1

 Score =  327 bits (837), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/297 (52%), Positives = 201/297 (67%), Gaps = 6/297 (2%)

Query: 251 PAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGH 310
           P       G+ ++R+ QYMY  +HRP +N I +WRKFVAEY+AP AKKRWC SMY  +G 
Sbjct: 296 PLKPVYEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMYG-SGR 354

Query: 311 HAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERV 370
              G FP+   D W C++C  KPGRGFEA  E  PRL K+ +ESG ++ELLY+DMP E  
Sbjct: 355 QTTGVFPQ---DVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPRESQ 411

Query: 371 QFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVA 430
             SG ++LEY KA QE+VFE  RVVR+G+LRIVF+PDLKI SWEFCA +HEE +PR L+ 
Sbjct: 412 NSSGQIVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLI 471

Query: 431 PQVNQL-VQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPK 489
           PQV+QL     +  ++   + +D A P  LQ NCNMF+ +  QLA+  E+ LV+DLG+ K
Sbjct: 472 PQVSQLGSAAQKYQQAAQNATTDSALPE-LQNNCNMFVASARQLAKALEVPLVNDLGYTK 530

Query: 490 RYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQ 546
           RYVR LQI+E+VNSMKDLI +S  + TGPIESL  +      S  L   S ++ S Q
Sbjct: 531 RYVRCLQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRTGPSSALPGPSPQQASDQ 587

DNA-binding adapter subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and LEUNIG to repress AGAMOUS expression.
Arabidopsis thaliana (taxid: 3702)

>sp|O74364|ADN1_SCHPO Adhesion defective protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=adn1 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 103/283 (36%), Gaps = 51/283 (18%)

Query: 259 GVCSRRIMQYMYHLR---HRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGF 315
           G    R++QY   L        ++ I YWR+FV ++Y      R+     D+        
Sbjct: 18  GYGVLRLLQYNEQLMSGWESTMKDDIGYWRRFVHDFYTEKGTFRYNIDYKDSPNQE---- 73

Query: 316 FPKAAVDAWQCDLCGTKPGRGFEANLEAFPR---------LNKVMFESGVIDELLYLDMP 366
            PK                  FE +  A PR         L K+ F  G   E    +  
Sbjct: 74  -PKL-----------------FELSYAALPRFLYLSYCGKLKKMSFLLGNTKEFAIPNNG 115

Query: 367 HERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVF--TPDLKILSWEFCAWQHEEFL 424
           +        ++ +Y   VQ        V+  G LR  F   P LK+ S EF A  H E+L
Sbjct: 116 YFVESSRASILYQYQGGVQ--------VIVSGHLRAHFFRAPLLKLDSLEFSAVGHSEYL 167

Query: 425 PRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDD 484
            R L+      L Q+        + G     P +   N N         +       V++
Sbjct: 168 LRELMTNASLALSQSRPPQNQIQHDGVKSEDPSSESVNIN-------SSSSLLPDSPVNE 220

Query: 485 LGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCC 527
            G     +R ++I E ++ M+DLI+F+L   +GP  +L  +  
Sbjct: 221 YGLEPHIMRFMEITETISGMRDLIAFTLAQRSGPTSALHKFAT 263

Probable transcriptional regulator involved in cell adhesion.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	617
359474038	811	PREDICTED: uncharacterized protein LOC10	0.837	0.637	0.511	1e-129
297742596	727	unnamed protein product [Vitis vinifera]	0.823	0.698	0.507	1e-127
255537289	750	Transcriptional corepressor SEUSS, putat	0.849	0.698	0.454	1e-120
224071712	729	predicted protein [Populus trichocarpa]	0.917	0.776	0.432	1e-116
224122440	873	predicted protein [Populus trichocarpa]	0.568	0.402	0.576	1e-116
255539545	745	Transcriptional corepressor SEUSS, putat	0.568	0.471	0.573	1e-114
356559869	879	PREDICTED: uncharacterized protein LOC54	0.575	0.403	0.573	1e-113
356530901	858	PREDICTED: uncharacterized protein LOC10	0.570	0.410	0.571	1e-113
356559867	869	PREDICTED: uncharacterized protein LOC10	0.575	0.408	0.581	1e-113
359490401	864	PREDICTED: uncharacterized protein LOC10	0.596	0.425	0.552	1e-111

>gi|359474038|ref|XP_002276270.2| PREDICTED: uncharacterized protein LOC100254797 [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 298/583 (51%), Positives = 367/583 (62%), Gaps = 66/583 (11%)

Query: 82  TTNYRLSRF-SSLLPNSSSA-----ISMGPQSHRSASADVYSYLNLPPLPV-FSSHSSSS 134
           T N  LS + SSL+ +S S      +S GPQS RSAS ++ SYL+LP  P+ FSSH+ S 
Sbjct: 60  TMNSSLSVWASSLIIDSLSTDGNLLLSGGPQSWRSASTNMESYLSLPSSPMSFSSHNLSI 119

Query: 135 TGSSNTDGSSTLQQTSHLGINSSQPRKRKQQQRG----LSATSPPDLHRRQGESSNDKKL 190
           +GSS  D SST++QTS L  N  Q  KR+QQQ+     ++ATS P             K 
Sbjct: 120 SGSSGIDSSSTMEQTSPLDKNCRQVWKRQQQQQQQLGVVNATSQPPSQTHYLSLLTGIKQ 179

Query: 191 DICASTEMQKKPRL--------------------NTLQLGSKS---------------EQ 215
           +   ST+M KKPRL                    ++LQL   +               + 
Sbjct: 180 EPDNSTQMPKKPRLEVQEEDFLHQQIIQQLLQRKDSLQLQGHNPHLQAWIQQHKMRNQQH 239

Query: 216 QNILHSTPEFGAVDIDKMQQQQMRHHQLQQPMHQVPAAYALHSGVCSRRIMQYMYHLRHR 275
           Q IL S  +   VD+ + QQQ     Q QQ  H+V A     SG+CSRR+MQYMYH RHR
Sbjct: 240 QKILQSIQQLQGVDMQQQQQQMRNQLQ-QQGTHEVSAMRPSDSGICSRRLMQYMYHQRHR 298

Query: 276 PSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGR 335
           P +N I+YWRKFVAEYY+PCAKKRWC S+YDN GHHA G FP++A+D WQCD+CG++ GR
Sbjct: 299 PPDNAISYWRKFVAEYYSPCAKKRWCLSLYDNVGHHAKGVFPQSAMDTWQCDICGSRSGR 358

Query: 336 GFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVV 395
           GFEA  E  P+L K+ FESGVIDELL++D+PHE    SGLM+LEYGKAVQE+V+EQ RVV
Sbjct: 359 GFEAIFEVLPQLIKINFESGVIDELLFVDLPHESRFSSGLMMLEYGKAVQESVYEQLRVV 418

Query: 396 REGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIY-SGSDGA 454
           REG+LRI+FT DLKILSWEFC   HEE LPR LVAPQVNQLV  AQKY++T+  S SDG 
Sbjct: 419 REGQLRIIFTHDLKILSWEFCTRHHEELLPRQLVAPQVNQLVHAAQKYQTTMNGSKSDGF 478

Query: 455 TPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNS 514
              +L  NCN FL AG QLARN EL LVD+LGF KRYVR LQIAE+V+SMKDL+ F  +S
Sbjct: 479 CAQDLLVNCNRFLRAGHQLARNLELQLVDELGFSKRYVRCLQIAEVVDSMKDLMIFVRDS 538

Query: 515 NTGPIESLKNYCCEASGSKPLKDESL----EKRSAQDLLNDGRKLVAASPILDNSENDSS 570
           N GPIESLKNY  EA+  K +K + L    +  S QD  ++      AS + D S   S 
Sbjct: 539 NIGPIESLKNYPREATTVK-IKKKQLHHGEQPESGQDSPSN-----RASNLRDIS---SG 589

Query: 571 SFTGCGPLASCEGATLSPGYYERLLRHNSFNPKLSKVKQEPSL 613
             TG     S EGA      Y++++R +S N   S VKQEP L
Sbjct: 590 LMTG-----SEEGALALTTRYQKMMRQSSLNSNSSTVKQEPCL 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742596|emb|CBI34745.3| unnamed protein product [Vitis vinifera]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 285/562 (50%), Positives = 354/562 (62%), Gaps = 54/562 (9%)

Query: 82  TTNYRLSRF-SSLLPNSSSA-----ISMGPQSHRSASADVYSYLNLPPLPV-FSSHSSSS 134
           T N  LS + SSL+ +S S      +S GPQS RSAS ++ SYL+LP  P+ FSSH+ S 
Sbjct: 6   TMNSSLSVWASSLIIDSLSTDGNLLLSGGPQSWRSASTNMESYLSLPSSPMSFSSHNLSI 65

Query: 135 TGSSNTD----GSSTLQQTSHLGI---------NSSQ-PRKRKQQQRGLSATSPPDLHRR 180
           +GSS  D     S    QT +L +         NS+Q P+K +     L       LH++
Sbjct: 66  SGSSGIDIVNATSQPPSQTHYLSLLTGIKQEPDNSTQMPKKPR-----LEVQEEDFLHQQ 120

Query: 181 QGESSNDKKLDICASTEMQ-KKPRLNTLQLGSK---SEQQNILHSTPEFGAVDIDKMQQQ 236
             +    +K     S ++Q   P L       K    + Q IL S  +   VD+ + QQQ
Sbjct: 121 IIQQLLQRK----DSLQLQGHNPHLQAWIQQHKMRNQQHQKILQSIQQLQGVDMQQQQQQ 176

Query: 237 QMRHHQLQQPMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCA 296
                  QQ  H+V A     SG+CSRR+MQYMYH RHRP +N I+YWRKFVAEYY+PCA
Sbjct: 177 MRNQ-LQQQGTHEVSAMRPSDSGICSRRLMQYMYHQRHRPPDNAISYWRKFVAEYYSPCA 235

Query: 297 KKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGV 356
           KKRWC S+YDN GHHA G FP++A+D WQCD+CG++ GRGFEA  E  P+L K+ FESGV
Sbjct: 236 KKRWCLSLYDNVGHHAKGVFPQSAMDTWQCDICGSRSGRGFEAIFEVLPQLIKINFESGV 295

Query: 357 IDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFC 416
           IDELL++D+PHE    SGLM+LEYGKAVQE+V+EQ RVVREG+LRI+FT DLKILSWEFC
Sbjct: 296 IDELLFVDLPHESRFSSGLMMLEYGKAVQESVYEQLRVVREGQLRIIFTHDLKILSWEFC 355

Query: 417 AWQHEEFLPRNLVAPQVNQLVQTAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLAR 475
              HEE LPR LVAPQVNQLV  AQKY++T+  S SDG    +L  NCN FL AG QLAR
Sbjct: 356 TRHHEELLPRQLVAPQVNQLVHAAQKYQTTMNGSKSDGFCAQDLLVNCNRFLRAGHQLAR 415

Query: 476 NTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPL 535
           N EL LVD+LGF KRYVR LQIAE+V+SMKDL+ F  +SN GPIESLKNY  EA+  K +
Sbjct: 416 NLELQLVDELGFSKRYVRCLQIAEVVDSMKDLMIFVRDSNIGPIESLKNYPREATTVK-I 474

Query: 536 KDESL----EKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYY 591
           K + L    +  S QD  ++      AS + D S   S   TG     S EGA      Y
Sbjct: 475 KKKQLHHGEQPESGQDSPSN-----RASNLRDIS---SGLMTG-----SEEGALALTTRY 521

Query: 592 ERLLRHNSFNPKLSKVKQEPSL 613
           ++++R +S N   S VKQEP L
Sbjct: 522 QKMMRQSSLNSNSSTVKQEPCL 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537289|ref|XP_002509711.1| Transcriptional corepressor SEUSS, putative [Ricinus communis] gi|223549610|gb|EEF51098.1| Transcriptional corepressor SEUSS, putative [Ricinus communis]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/566 (45%), Positives = 342/566 (60%), Gaps = 42/566 (7%)

Query: 83  TNYRLSRFSSL-LPNSSSAISMGPQSHRSASADVYSYLNLPPLPVFSSHSSSSTGSSNTD 141
           TN  LS  +S  L   +SA+  GP  HR  S D+  ++N+  LP FSSH+S  +GS    
Sbjct: 29  TNLGLSVGASCSLSGFNSAVLEGPDLHRRVSGDM-DHVNVAALPWFSSHNSHISGSPAPS 87

Query: 142 GSSTLQQTSHLGINSSQPRKRKQQQRGLSATSPPDLHRRQGESSNDKKLDICASTEMQKK 201
           GSST+QQ S +G N S+  KRK QQ G+S  S  +L + Q    N +K ++  S EM  +
Sbjct: 88  GSSTVQQDSQVGQNCSRVLKRKWQQGGISTKSQCELKKSQNLLLNAEKRELSISNEMYDR 147

Query: 202 PRLNTLQ------------LGSKS-----------------------EQQNILHSTPEFG 226
           PR +T Q            L S++                       ++Q  L S PE  
Sbjct: 148 PRFDTKQDAVLHQHNIQQLLQSQNNRQLQGHSQVLEALVHQHKLENQKRQRKLQSPPEMQ 207

Query: 227 AVDIDKMQQQQMRHHQLQQPMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRK 286
            V++ + +QQQMR +  Q  + +V   +  +S VCSRR+ QYMYHL+HRP  + IAYWRK
Sbjct: 208 EVELKEQRQQQMRDYLQQLALQEVHHIHPFNSNVCSRRLKQYMYHLQHRPPNSDIAYWRK 267

Query: 287 FVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPR 346
           FVAEYYAPCAKKRWC S+ D+   HA   FP+AAV  W C LCGTK GRG+EA  E  PR
Sbjct: 268 FVAEYYAPCAKKRWCLSLCDDFTPHADCVFPRAAVGTWHCGLCGTKCGRGYEATFEVLPR 327

Query: 347 LNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTP 406
           LNK+ FESGVIDELL+L++P E    SGL++LEY KAV ETVF+Q  VVR+GKLR+VFT 
Sbjct: 328 LNKIHFESGVIDELLFLELPQECRLPSGLIMLEYEKAVHETVFDQLHVVRKGKLRVVFTL 387

Query: 407 DLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIY-SGSDGATPHNLQANCNM 465
            LKILSWEFC+  HEE LPR+ VA +VN+ V  AQK ++TI   GSD  + H L  N NM
Sbjct: 388 GLKILSWEFCSHNHEELLPRSSVASKVNEFVHAAQKLQTTIKCGGSDKISLHTLGENYNM 447

Query: 466 FLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNY 525
            L  GC+L  N +L LV +    KRY+R LQIA+++N+MKDL++FS  +  GPI+SLKNY
Sbjct: 448 LLSTGCKLQSNLDLQLVGEFELSKRYIRCLQIADVLNNMKDLMTFSWENKIGPIQSLKNY 507

Query: 526 CCEASGSKPLKDESLEKRS---AQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCE 582
             + + +K  +DE  EK     A  + ND  KL++ S  L +++N++S+ +  G L   E
Sbjct: 508 SQKFTTTKFHRDEYQEKEKLEIAHGMSNDTTKLLSTSHGLSSNKNENSNISKDGLLTGSE 567

Query: 583 GATL-SPGYYERLLRHNSFNPKLSKV 607
            A L     Y +L R  S +   SK+
Sbjct: 568 KAALMHASDYCKLPRQTSSSSNFSKL 593

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071712|ref|XP_002303562.1| predicted protein [Populus trichocarpa] gi|222840994|gb|EEE78541.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 267/618 (43%), Positives = 363/618 (58%), Gaps = 52/618 (8%)

Query: 1   MALEAFSDSKYQLAFSSGVLNQVTGDTMQPSSSNHLLQNDGQYRAAVASLLNASSGNLSG 60
           MAL+A+ D+ Y LA SS   +QVT D ++ S+S ++LQ  GQ  AA+    NASSG   G
Sbjct: 1   MALQAYLDN-YLLALSSLDSSQVTTDLVKSSNSENILQR-GQIHAALGCCSNASSGKFPG 58

Query: 61  SAANI---NEGMVTGLRNQTIVQETTNYRLSRFSSLLPN-SSSAISMGPQSHRSASADVY 116
           S   I   N   V+  R +TI+   TN   S  +S L   S+SA+  GPQ   SAS D  
Sbjct: 59  SLIKIPDLNVAEVSEDREKTILNSITNLESSLAASFLATGSNSAVPKGPQLQGSASTDT- 117

Query: 117 SYLNLPPLPVFSSHSSSSTGSSNTDGSSTLQQTSHLGINSSQPRKRKQQQRGLSATSPPD 176
            +L+L   P+  S + S+ GSS T   S  ++  HLG N  Q +KRK+QQ  +  T   +
Sbjct: 118 DHLDLSTFPLLMSPNLSNFGSS-TACYSIAEEDVHLGQNRLQIQKRKRQQGDIRTTFQSE 176

Query: 177 LHRRQGESSNDKKLDICASTEMQKKPRL----------NTLQ------------------ 208
           L +      + K+  + +S ++ KK RL          N +Q                  
Sbjct: 177 LQKSLDSLLDFKREGLSSSPQLHKKIRLDNQKNAILQENIIQQLLPSQDSVQLQASRPTL 236

Query: 209 --------LGSKSEQQNILHSTPEFGAVDIDKMQQQQMRHHQLQQPMHQVPAAYALHSGV 260
                   LG++ +QQ+ L ST +   V++ + QQ+QMR +     + +V +  + ++ V
Sbjct: 237 HALVPQNKLGNQ-KQQDTLQSTLQLLGVNMKQQQQRQMRDYLQSLALPRVQSMLSFNANV 295

Query: 261 CSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAA 320
           CSRR+MQYMYH R RP ++GI+YWRKFVAEYYAPCAKKRWC S  D+A  HA G F +  
Sbjct: 296 CSRRLMQYMYHQRQRPPDSGISYWRKFVAEYYAPCAKKRWCLSSCDSARLHAIGVFSQGT 355

Query: 321 VDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEY 380
              W CDLC TK GRGFEA  E  PRLN + F+SGVI+ELL+L+ P E    SGLM+LEY
Sbjct: 356 ---WHCDLCRTKSGRGFEATFEVLPRLNNIQFDSGVINELLFLECPFEFTLPSGLMVLEY 412

Query: 381 GKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTA 440
           GK V ET+++Q  VVREGKLRI+F  +LKI+ WEFC+  HEE +PR+ + P+VN+LV  +
Sbjct: 413 GKVVHETLYDQLHVVREGKLRIIFAHNLKIICWEFCSRDHEELIPRSSILPKVNELVHAS 472

Query: 441 QKYESTIYSGSDGATPH-NLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAE 499
           + Y++ I      +TP  +LQ NC M L AG +L R+  L LV DLGF KRYVR LQIA+
Sbjct: 473 KNYQTNIDDIGSYSTPLCDLQENCTMLLSAGRELERDLGLQLVGDLGFSKRYVRCLQIAD 532

Query: 500 IVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRS---AQDLLNDGRKLV 556
           I N MKDL++FS ++  GPIESLK Y  + S +K  KDE  +K      Q L  D  KL 
Sbjct: 533 IFNCMKDLMTFSWDNQIGPIESLKKYTQQFSTTKLHKDELQDKEQLEVLQGLPTDPNKLS 592

Query: 557 AASPILDNSENDSSSFTG 574
           A+  +  NS ++S+   G
Sbjct: 593 ASHALGGNSNDNSNMSKG 610

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122440|ref|XP_002318837.1| predicted protein [Populus trichocarpa] gi|222859510|gb|EEE97057.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/361 (57%), Positives = 261/361 (72%), Gaps = 10/361 (2%)

Query: 259 GVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPK 318
           G+C+RR+MQY+YH R R +EN IAYWRKFV+EYY+P AKKRWC S+Y+N GHHA G FP+
Sbjct: 309 GICARRLMQYLYHQRQRLAENTIAYWRKFVSEYYSPRAKKRWCLSLYENVGHHALGVFPQ 368

Query: 319 AAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMIL 378
           AA++AWQCDLCG+K GRGFEA  E  PRLN++ F SGVIDELL+LD+P E    SG+M+L
Sbjct: 369 AAMEAWQCDLCGSKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDLPREFRLHSGIMML 428

Query: 379 EYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQ 438
           EY KAVQE+V+EQ RVVREG+LRI+FTPDLKILSWEFCA +HEE LPR +VAPQVNQL+Q
Sbjct: 429 EYAKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCARRHEELLPRRVVAPQVNQLLQ 488

Query: 439 TAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQI 497
            AQK +STI  SGSDG +  +LQ N NM L AG QLA++ EL  ++DLGF KRYVR LQI
Sbjct: 489 VAQKCQSTIAESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQI 548

Query: 498 AEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKR----SAQDLLNDG- 552
           +E+VNSMKDLI F      GPIE LK+Y   A+ +K L+ + +++     S Q L  D  
Sbjct: 549 SEVVNSMKDLIDFCREQKAGPIEGLKSYPRHATAAK-LQMQKMQEMEQLASVQGLPTDRN 607

Query: 553 --RKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLL-RHNSFNPKLSKVKQ 609
              KL+A  P ++N  N ++   G G L+    A L+   Y+ LL R NS N     ++Q
Sbjct: 608 TINKLMALHPGINNHVNSNNQMVGRGALSGSAQAALALTNYQNLLMRQNSMNSNSCSLQQ 667

Query: 610 E 610
           E
Sbjct: 668 E 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539545|ref|XP_002510837.1| Transcriptional corepressor SEUSS, putative [Ricinus communis] gi|223549952|gb|EEF51439.1| Transcriptional corepressor SEUSS, putative [Ricinus communis]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/361 (57%), Positives = 260/361 (72%), Gaps = 10/361 (2%)

Query: 259 GVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPK 318
           G+C+RR+MQY+YH R RP+EN IAYWRKFVAEYY+P AKKRWC S+YDN GHHA G FP+
Sbjct: 183 GICARRLMQYLYHQRQRPAENSIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGVFPQ 242

Query: 319 AAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMIL 378
           AA++AWQCD+CG+K GRGFEA  E  PRL+++ F SGVIDELL+LD+P E    SG+M+L
Sbjct: 243 AAMEAWQCDICGSKSGRGFEATFEVLPRLDEIKFGSGVIDELLFLDLPRECRFPSGIMML 302

Query: 379 EYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQ 438
           EYGKAVQE+V+EQ RVVREG+LRI+FT DLKILSWEFCA +HEE LPR +VAPQVNQLVQ
Sbjct: 303 EYGKAVQESVYEQLRVVREGQLRIIFTHDLKILSWEFCARRHEELLPRRVVAPQVNQLVQ 362

Query: 439 TAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQI 497
            AQK +STI  SG+DG +  +LQ N NM L AG QLA+  EL  ++DLGF KRYVR LQI
Sbjct: 363 VAQKCQSTIAESGADGVSQQDLQTNSNMVLTAGRQLAKTLELQSLNDLGFSKRYVRCLQI 422

Query: 498 AEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKR----SAQDLLNDG- 552
           +E+VNSMKDLI F    N GPIE LK+Y    S +K L+ + +++     + Q L  D  
Sbjct: 423 SEVVNSMKDLIDFCREQNVGPIEGLKSYPRHTSVAK-LQMQKMQEMEQLANVQGLPTDRN 481

Query: 553 --RKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLL-RHNSFNPKLSKVKQ 609
              KL+A  P ++N  +++      G L+    A L+   Y+ LL R NS     S ++Q
Sbjct: 482 TLNKLMALHPGINNHMSNNHHMANRGALSGSAQAALALTNYQNLLMRQNSMTSNSSSLQQ 541

Query: 610 E 610
           E
Sbjct: 542 E 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559869|ref|XP_003548219.1| PREDICTED: uncharacterized protein LOC547529 [Glycine max]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/363 (57%), Positives = 258/363 (71%), Gaps = 8/363 (2%)

Query: 258 SGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFP 317
           SGVC+RR+MQY+YH R RP++N IAYWRKFVAEYY+P AKKRWC S+Y N GHHA G FP
Sbjct: 319 SGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYSNVGHHALGVFP 378

Query: 318 KAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMI 377
           +A++DAW CD+CG+K GRGFEA  E  PRLN++ F SGVIDELL+LDMP E    SG M+
Sbjct: 379 QASMDAWHCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDMPREMRFASGAMM 438

Query: 378 LEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLV 437
           LEYGKAVQE+V+EQ RVVREG+LRI+FT DLKILSWEFCA  HEE LPR LVAPQVNQLV
Sbjct: 439 LEYGKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARCHEELLPRRLVAPQVNQLV 498

Query: 438 QTAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQ 496
           Q A+K +STI  SGSDG +  ++Q N NM L AG QLA+  E+  +++LGF KRYVR LQ
Sbjct: 499 QVAKKCQSTIAESGSDGVSQQDIQTNSNMLLTAGGQLAKILEMQSLNELGFSKRYVRCLQ 558

Query: 497 IAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKP--LKDESLEK-RSAQDLLNDG- 552
           I+E+VNSMKDLI    +   G IESLKN+   A+ SK    K + +E+  + Q L  D  
Sbjct: 559 ISEVVNSMKDLIDICADHKIGAIESLKNFPRLATASKVQMQKMQEMEQLANVQGLPTDRN 618

Query: 553 --RKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLL-RHNSFNPKLSKVKQ 609
              KL+A +P L+N  N+  +    G L+    A L+   Y+ LL R NS N     +++
Sbjct: 619 TLNKLMALNPGLNNHINNPHNMVNRGALSGSAQAALALNNYQNLLMRQNSMNSSPGSLQR 678

Query: 610 EPS 612
           E S
Sbjct: 679 EGS 681

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530901|ref|XP_003534017.1| PREDICTED: uncharacterized protein LOC100789452 [Glycine max]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/366 (57%), Positives = 259/366 (70%), Gaps = 14/366 (3%)

Query: 258 SGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFP 317
           SGVC+RR+MQY+YH R RP++N IAYWRKFVAEYY+  AKKRWC S+Y N GHHA G FP
Sbjct: 303 SGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSLRAKKRWCLSLYSNVGHHALGVFP 362

Query: 318 KAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMI 377
           +A++DAW CD+CG+K GRGFEA  E  PRLN++ F SGVIDELL+LDMP E    SG M+
Sbjct: 363 QASMDAWHCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDMPREMRFASGAMM 422

Query: 378 LEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLV 437
           LEYGKAVQE+V+EQ RVVREG+LRI+FT DLKILSWEFCA +HEE LPR LVAPQVNQLV
Sbjct: 423 LEYGKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLV 482

Query: 438 QTAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQ 496
           Q A+K +STI  SGSDG +  ++Q N NM L AG QLA+  E+  +++LGF KRYVR LQ
Sbjct: 483 QVAKKCQSTIAESGSDGVSQQDIQTNGNMLLTAGGQLAKILEMQSLNELGFSKRYVRCLQ 542

Query: 497 IAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKP--LKDESLEKR-------SAQD 547
           I+E+VNSMKDLI        G IESLKNY   A+ SK    K + +E+        + Q+
Sbjct: 543 ISEVVNSMKDLIDICAEHKIGAIESLKNYPRLATASKHQMQKMQEMEQLGNVQCLPTDQN 602

Query: 548 LLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLL-RHNSFNPKLSK 606
            LN   KL+A +P L+N  N+S +    G L+    A L+   Y+ LL R NS N     
Sbjct: 603 TLN---KLMALNPGLNNHINNSHNMVNRGALSGSAQAALALNNYQNLLMRQNSTNSSPGS 659

Query: 607 VKQEPS 612
           +++E S
Sbjct: 660 LQREGS 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559867|ref|XP_003548218.1| PREDICTED: uncharacterized protein LOC100816886 [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/363 (58%), Positives = 261/363 (71%), Gaps = 8/363 (2%)

Query: 258 SGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFP 317
           SGVC+RR+MQY+YH R RP++N IAYWRKFVAEYY+P AKKRWC S+Y N GHHA G FP
Sbjct: 305 SGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYSNVGHHALGVFP 364

Query: 318 KAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMI 377
           +AA+DAWQCD+CG+K GRGFEA  E  PRLN++ F SGVIDELL+LD+P E    SG+M+
Sbjct: 365 QAAMDAWQCDMCGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPRETRFPSGVMM 424

Query: 378 LEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLV 437
           LEY KA+QE+V+EQ RVVREG+LRI+FT DLKILSWEFCA +HEE LPR LVAPQVNQLV
Sbjct: 425 LEYAKAIQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLV 484

Query: 438 QTAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQ 496
           Q AQK +STI  SG+DG +  +LQ N NM L AG QLA+  EL  ++DLGF KRYVR LQ
Sbjct: 485 QVAQKCQSTIAESGADGVSQQDLQTNSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQ 544

Query: 497 IAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKP--LKDESLEK-RSAQDLLNDG- 552
           I+E+VNSMKDLI        G IESLKNY   A+ SK    K + +E+  + Q L  D  
Sbjct: 545 ISEVVNSMKDLIDICSEHKIGAIESLKNYPRLATASKGQMQKMQEMEQLANVQGLPTDRN 604

Query: 553 --RKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLL-RHNSFNPKLSKVKQ 609
              KL+  +P L+N  N++++  G G L+    A L+   Y+ LL R NS N     +++
Sbjct: 605 TLNKLMTLNPGLNNHMNNTNNMVGRGALSGSAQAALALNNYQNLLMRQNSMNSSPGSLQR 664

Query: 610 EPS 612
           E S
Sbjct: 665 EGS 667

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490401|ref|XP_002279763.2| PREDICTED: uncharacterized protein LOC100265879 [Vitis vinifera]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/382 (55%), Positives = 264/382 (69%), Gaps = 14/382 (3%)

Query: 245 QPMHQVPAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSM 304
           QP+  +   Y   SGVC+RR+MQY+YH R    +  IAYWRKFVAEYY+P AKKRWC S+
Sbjct: 283 QPISAMKRPY--DSGVCARRLMQYLYHQRQ--PDKTIAYWRKFVAEYYSPRAKKRWCLSL 338

Query: 305 YDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLD 364
           YDN G+HA G FP+AA+DAW C++C +K GRGFEA  E  PRLN++ F SGVIDELL+LD
Sbjct: 339 YDNVGNHALGVFPQAAMDAWHCEICNSKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLD 398

Query: 365 MPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFL 424
           +P E    SG+M+LEYGKAVQE+V+EQ RVVREG+LRI+FTPDLKILSWEFCA  HEE L
Sbjct: 399 LPRECRFSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCAQHHEELL 458

Query: 425 PRNLVAPQVNQLVQTAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVD 483
           PR LVAPQVNQLVQ AQK +STI  SGSDG +  +LQ N NM L AG QLAR+ E   ++
Sbjct: 459 PRRLVAPQVNQLVQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRQLARSLESQSLN 518

Query: 484 DLGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKR 543
           DLGF KRYVR LQI+E+VNSMKDLI F   +  GPI+ LK+Y   AS  K L+ + +++ 
Sbjct: 519 DLGFSKRYVRCLQISEVVNSMKDLIDFCRENKVGPIDGLKSYPRHASAVK-LEMQKMQEM 577

Query: 544 ----SAQDLLNDG---RKLVAASPILDNSENDSSSFTGCGPLASCEGATLSPGYYERLL- 595
               + Q L  D     KL+A  P L++  +++      G L+    A L+   Y+ LL 
Sbjct: 578 EQLANVQGLPTDRNTLNKLIALHPGLNSHMSNNPHMVNRGALSGSAQAALALTNYQNLLM 637

Query: 596 RHNSFNPKLSKVKQEPSLSYKS 617
           R NS N   S ++QE   S+ S
Sbjct: 638 RQNSMNSNPSSLQQEGPSSFNS 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	617
TAIR|locus:2174028	816	SLK2 "AT5G62090" [Arabidopsis	0.583	0.441	0.529	1.2e-102
TAIR|locus:504955415	685	SLK3 "SEUSS-like 3" [Arabidops	0.570	0.513	0.498	5.1e-90
TAIR|locus:2131804	748	SLK1 "SEUSS-like 1" [Arabidops	0.555	0.458	0.519	5.9e-89
TAIR|locus:2029137	877	SEU "seuss" [Arabidopsis thali	0.458	0.322	0.550	5.8e-82
POMBASE|SPBC30B4.03c	391	adn1 "adhesion defective prote	0.204	0.322	0.281	1.9e-05

TAIR|locus:2174028 SLK2 "AT5G62090" [Arabidopsis thaliana (taxid:3702)]

 Score = 970 (346.5 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
 Identities = 195/368 (52%), Positives = 249/368 (67%)

Query:   251 PAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGH 310
             P  Y   + VC+RR+MQY+YH R RPSE+ I YWRKFV EY++P AKKRWC S YDN GH
Sbjct:   284 PRPY--ENSVCARRLMQYLYHQRQRPSESSIVYWRKFVTEYFSPRAKKRWCLSHYDNVGH 341

Query:   311 HAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERV 370
              A G  P+AA D WQCDLCG+K GRGFEA  +  PRLN++ F SGV+DELLYL +P ER 
Sbjct:   342 SALGVSPQAATDEWQCDLCGSKSGRGFEATFDVLPRLNEIKFASGVLDELLYLGVPSERR 401

Query:   371 QFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVA 430
               SG+M+LEYGKAVQE+V+E  RVVREG LRI+F+ +LKILSWEFC  +HEE LPR LVA
Sbjct:   402 YGSGIMVLEYGKAVQESVYEHIRVVREGHLRIIFSQELKILSWEFCTRRHEELLPRRLVA 461

Query:   431 PQVNQLVQTAQKYESTI-YSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPK 489
             PQVNQL+Q A+K +STI  SGSDG    +LQAN NM + AG QLA++ E   ++DLGF K
Sbjct:   462 PQVNQLLQVAEKCQSTIDQSGSDGIHQQDLQANSNMVMAAGRQLAKSLESHSLNDLGFSK 521

Query:   490 RYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQDLL 549
             RYVR LQI+E+V+SMKD+I F  +   GPIE+LK+Y       KP   E  +  +A+ L 
Sbjct:   522 RYVRCLQISEVVSSMKDMIDFCRDQKVGPIEALKSYPYRMKAGKPQMQEMEQLAAARGLP 581

Query:   550 NDGRKLVAASPILDNSEN-DSSSFTGCGPL-ASCEGATLS-PGYYERLLRHNSFNPKLSK 606
              D   L     + ++  N   ++ +G G L  S + A  +   Y   L++ N  N  L+ 
Sbjct:   582 PDRNSLNKLMALRNSGINIPMNNMSGQGSLPGSAQAAAFALTNYQSMLMKQNHLNSDLNN 641

Query:   607 --VKQEPS 612
               ++QEPS
Sbjct:   642 TTIQQEPS 649

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009790 "embryo development" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

TAIR|locus:504955415 SLK3 "SEUSS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 185/371 (49%), Positives = 244/371 (65%)

Query:   259 GVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPK 318
             GVC+R++M Y+YHL+ RP+EN I YWRKFVAEY++P AK+R C S Y++ GHHA G FP+
Sbjct:   159 GVCARKLMMYLYHLQQRPAENCITYWRKFVAEYFSPRAKQRLCLSQYESVGHHALGMFPQ 218

Query:   319 AAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMIL 378
             AA D WQCDLCGTK G+GFEA  +   RL ++ F SG+IDELLYLD P E    +GLM+L
Sbjct:   219 AAPDMWQCDLCGTKSGKGFEATFDVLARLIEIKFASGIIDELLYLDHPRENRFPNGLMML 278

Query:   379 EYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQ 438
             EY KAVQETV EQ RVVREG LRI+F+PDLKILSWEFCA +HEE L R L+APQVNQL+Q
Sbjct:   279 EYRKAVQETVHEQFRVVREGHLRIIFSPDLKILSWEFCARRHEELLLRRLIAPQVNQLLQ 338

Query:   439 TAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQI 497
              AQK +STI  SGS G +  ++Q+N NM L AG QLA+  EL  ++DLG+PKRY+R+LQI
Sbjct:   339 VAQKCQSTISESGSQGVSQQDIQSNSNMVLGAGRQLAKFMELQSLNDLGYPKRYIRTLQI 398

Query:   498 AEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRS------------- 544
             +E+V SMKDL++F+     GP+E LK    E + +  L+ + +++               
Sbjct:   399 SEVVKSMKDLMNFTGEHKVGPLEGLKQLL-EQTATVKLQRQKMQEMEQFGNSGAMSGPAQ 457

Query:   545 AQDLLNDGRKLVAASPILDNSENDSSSFTGCGPLASCEGATLS-PGYYERLLRHNSFNPK 603
             AQ  L+ G     +    +N+ N+     G G +     AT +   Y   L+R N+ N +
Sbjct:   458 AQMTLSSG---TMSGSTANNNSNNHHQIVGRGAMNGSPQATAALTNYQSMLIRQNAMNNQ 514

Query:   604 LSKVKQEPSLS 614
              S    +   S
Sbjct:   515 NSNTGNQEGFS 525

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2131804 SLK1 "SEUSS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 184/354 (51%), Positives = 240/354 (67%)

Query:   259 GVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPK 318
             GVC+R++M Y+YHL+ RP+EN I YWRKFVAEY++P AK+R C S Y++AGHHA G FP+
Sbjct:   187 GVCARKLMMYLYHLQQRPAENCITYWRKFVAEYFSPRAKQRLCLSQYESAGHHALGMFPQ 246

Query:   319 AAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMIL 378
             AA D WQCDLCGTK G+GFEA  +   RL ++ F SG+IDELLYLD P E    +GLM+L
Sbjct:   247 AAPDMWQCDLCGTKSGKGFEATFDVLARLIEIKFASGIIDELLYLDHPRENRFPNGLMML 306

Query:   379 EYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQ 438
             EY KAVQETV EQ RVVREG LRI+F+ DLKILSWEFCA +HEE L R L+APQVNQL+Q
Sbjct:   307 EYRKAVQETVHEQFRVVREGHLRIIFSQDLKILSWEFCARRHEELLLRRLIAPQVNQLLQ 366

Query:   439 TAQKYESTIY-SGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQI 497
              AQK +STI  SGS+G +  +LQ+N NM L AG QLA+  EL  ++DLG+PKRY+R+LQI
Sbjct:   367 VAQKCQSTISESGSEGVSQQDLQSNSNMVLGAGRQLAKFMELQSLNDLGYPKRYIRTLQI 426

Query:   498 AEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKD--ESLEKRSAQDLLNDG--R 553
             +E+V SMKDL++F+     GPIE LK    +    K  K   + +E+      +N     
Sbjct:   427 SEVVKSMKDLMNFTGEQKIGPIEGLKRLLEQTVTVKLQKQKMQEMEQFGNNGAINGPVQA 486

Query:   554 KLVAASPILD----NSENDSSSFTGCGPLAS-CEGA-TLSPGYYERLLRHNSFN 601
             ++V  S  ++    N+ N+     G G ++   EG   +S G       +N+ N
Sbjct:   487 QMVLTSGTMNGSTGNNTNNHHQIVGRGAMSGPAEGQMVISSGTVSGATANNNSN 540

GO:0005634 "nucleus" evidence=ISM

GO:0009790 "embryo development" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

TAIR|locus:2029137 SEU "seuss" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 159/289 (55%), Positives = 202/289 (69%)

Query:   259 GVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPK 318
             G+ ++R+ QYMY  +HRP +N I +WRKFVAEY+AP AKKRWC SMY  +G    G FP+
Sbjct:   304 GMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMY-GSGRQTTGVFPQ 362

Query:   319 AAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMIL 378
                D W C++C  KPGRGFEA  E  PRL K+ +ESG ++ELLY+DMP E    SG ++L
Sbjct:   363 ---DVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPRESQNSSGQIVL 419

Query:   379 EYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQ 438
             EY KA QE+VFE  RVVR+G+LRIVF+PDLKI SWEFCA +HEE +PR L+ PQV+QL  
Sbjct:   420 EYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLIPQVSQLGS 479

Query:   439 TAQKYESTIYSGS-DGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQI 497
              AQKY+    + + D A P  LQ NCNMF+ +  QLA+  E+ LV+DLG+ KRYVR LQI
Sbjct:   480 AAQKYQQAAQNATTDSALPE-LQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQI 538

Query:   498 AEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQ 546
             +E+VNSMKDLI +S  + TGPIESL  +      S  L   S ++ S Q
Sbjct:   539 SEVVNSMKDLIDYSRETRTGPIESLAKFPRRTGPSSALPGPSPQQASDQ 587

GO:0005634 "nucleus" evidence=ISM

GO:0003712 "transcription cofactor activity" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0060090 "binding, bridging" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0003677 "DNA binding" evidence=IDA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

POMBASE|SPBC30B4.03c adn1 "adhesion defective protein, predicted transcriptional regulator (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 121 (47.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 38/135 (28%), Positives = 62/135 (45%)

Query:   393 RVVREGKLRIVF--TPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSG 450
             +V+  G LR  F   P LK+ S EF A  H E+L R L+      L Q+        + G
Sbjct:   134 QVIVSGHLRAHFFRAPLLKLDSLEFSAVGHSEYLLRELMTNASLALSQSRPPQNQIQHDG 193

Query:   451 SDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAEIVNSMKDLISF 510
                  P +   N N    +   L  ++    V++ G     +R ++I E ++ M+DLI+F
Sbjct:   194 VKSEDPSSESVNIN----SSSSLLPDSP---VNEYGLEPHIMRFMEITETISGMRDLIAF 246

Query:   511 SLNSNTGPIESLKNY 525
             +L   +GP  +L  +
Sbjct:   247 TLAQRSGPTSALHKF 261

GO:0003712 "transcription cofactor activity" evidence=ISM

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISM

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IMP

GO:0071276 "cellular response to cadmium ion" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	617
pfam01803	230	pfam01803, LIM_bind, LIM-domain binding protein	2e-74

>gnl|CDD|216712 pfam01803, LIM_bind, LIM-domain binding protein

 Score =  237 bits (607), Expect = 2e-74
 Identities = 81/266 (30%), Positives = 122/266 (45%), Gaps = 39/266 (14%)

Query: 262 SRRIMQYMYHLRH-RPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAA 320
             R++++  HL + R  ++ I+YW++FV E+++P A  R+  S  D              
Sbjct: 1   ILRLLEFNEHLSNFRGEDDDISYWQRFVHEFFSPDAVLRYSLSSEDGPEG---------- 50

Query: 321 VDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEY 380
                         + FE    A PR  + +FESGV +  L LD   E+V  +G + +E 
Sbjct: 51  --------------KQFEITTPALPRYFRTIFESGVKELQLVLDGAREQVLPNGSIFVEC 96

Query: 381 GKAVQETVFEQ-CRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVAPQVNQLVQT 439
            KA     ++   +VV EG LR  F PDLKI  W+FC   HEE++PR+++ P  + L   
Sbjct: 97  PKASFIYWYDDGSQVVTEGTLRAHFDPDLKIEWWDFCTRSHEEYIPRSVLEPLASPL--- 153

Query: 440 AQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAE 499
                              L  N  +    G Q   +     V   G PK  +R L+IAE
Sbjct: 154 ---------HTKSKQQSPELSKNSQLRQQKGPQPITSLPSSNVTRFGLPKAVMRFLEIAE 204

Query: 500 IVNSMKDLISFSL-NSNTGPIESLKN 524
           I++ M+DL+SFS  N    P E+LK 
Sbjct: 205 ILSPMQDLMSFSKANPILSPREALKQ 230

The LIM-domain binding protein, binds to the LIM domain pfam00412 of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development. The Drosophila protein Chip is required for segmentation and activity of a remote wing margin enhancer. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	617
PF01803	240	LIM_bind: LIM-domain binding protein; InterPro: IP	100.0
KOG2181	415	consensus LIM domain binding protein LDB1/NLI/CLIM	100.0

>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development

Probab=100.00  E-value=6.1e-65  Score=506.60  Aligned_cols=237  Identities=35%  Similarity=0.584  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHhcCC-CCCCchhHHHHHHHHhcCCCCeeeeEeecccCCCCCcccccccccccccccccCCCCCCceeEEc
Q 042790          262 SRRIMQYMYHLRHR-PSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRGFEAN  340 (617)
Q Consensus       262 ~lRLmqf~e~Ls~r-~~~ndIeYWqkFV~EFFSP~AvlR~tls~~d~~g~~a~Gvf~q~~~~~w~cd~~gsk~~KqFEIt  340 (617)
                      ++||++|+++|+++ ++.+|++||++||+|||+|+|++|||++.+++.|                       .+|+|||+
T Consensus         1 ilRl~~~~~~l~~~~~~~~~~~yW~~fv~~fF~~~a~lr~~~~~~~~~~-----------------------~~k~FEi~   57 (240)
T PF01803_consen    1 ILRLLEFIERLSNFSPNLNDIEYWQKFVHEFFSPDAVLRISLWNEDGNG-----------------------SPKQFEIT   57 (240)
T ss_pred             CchHHHHHHHHHhhcCCCCcHHHHHHHHHHHcCCCeeEEEEEEcCCCCC-----------------------CCeeEEEc
Confidence            58999999999998 8899999999999999999999999998765421                       25999999


Q ss_pred             ccchhHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEe-cCeEEEEeEEEEEEeCcccceeEEEEEeec
Q 042790          341 LEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVF-EQCRVVREGKLRIVFTPDLKILSWEFCAWQ  419 (617)
Q Consensus       341 ~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~Y-dGs~Vv~~G~LR~~F~~dLKIEs~EF~~~~  419 (617)
                      +++|||||+++|++||++++|++++++|++|+||+|+|||+||+++||| ||++|+++|+||++|++++||||||||+++
T Consensus        58 ~~~lPR~f~~~~~sGv~~~~~~l~~~~e~~l~ng~i~ie~~~~~~~~~y~~gs~v~~~G~lr~~f~~~lKIe~~df~~~~  137 (240)
T PF01803_consen   58 RPLLPRYFRTLFESGVKRMQLVLDGPREQVLPNGSIFIECPRATFIYWYEDGSQVVHEGQLRAQFDPDLKIEWWDFCTRS  137 (240)
T ss_pred             hHHHHHHHHHHhcCCceEEEEEecCCceEEcCCCeEEEEECCEEEEEEECCceEEEEEeEEEEEECccccEEEEEEEeec
Confidence            9999999999999999999999999999999999999999999999999 599999999999999999999999999999


Q ss_pred             eeecccccchhhhhhHHHHhhhccccccccCCCCCCchhhhhhhhhhhhhhcccccccCCCCCCCCCcchhhhhHHHHHH
Q 042790          420 HEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRSLQIAE  499 (617)
Q Consensus       420 HeEyIpR~~L~~qvn~l~q~aqK~qs~i~s~s~gks~eel~kN~n~fl~a~rqLa~~Lp~s~Vn~~Gip~~vmR~LQIsE  499 (617)
                      |+|||||++|++++.+....+++.+...   ++.|..+++.+|++....+.+++++.||.++|+++|+|+++||||||+|
T Consensus       138 ~~e~I~r~~l~~~~~~~~~~~~~~~~~~---~~~k~~~~~~~~~~~~~~~~~~~~~~Lp~~~v~~~Gi~~~~mr~Lqi~e  214 (240)
T PF01803_consen  138 HEEYIPRSALEQQASNLHPSVQIFQKLS---PDQKQSPDMSKNSKARQQKSPQLPPSLPSSNVNEFGIPERVMRCLQIAE  214 (240)
T ss_pred             ccccCcHHHHHHhhccchhhhHHhhhcc---cccccccchhhhhhhhhhcccccCCCcccCCCCcCCCCHHHHHHHHHHH
Confidence            9999999999988765444443332221   4466888999999888888888888899999999999999999999999


Q ss_pred             HHhchHHHHHHhHhcC-CCHHHHHHH
Q 042790          500 IVNSMKDLISFSLNSN-TGPIESLKN  524 (617)
Q Consensus       500 VmsqMkdLM~FSk~n~-lSP~EALk~  524 (617)
                      ||++|++||.|+++|+ +||+|||++
T Consensus       215 vms~M~~Lm~fs~~~~~~sP~eaL~~  240 (240)
T PF01803_consen  215 VMSQMKDLMSFSKQNNILSPLEALEQ  240 (240)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHhcC
Confidence            9999999999999995 999999984

Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus

>KOG2181 consensus LIM domain binding protein LDB1/NLI/CLIM [Transcription]

Probab=100.00  E-value=2.1e-35  Score=301.22  Aligned_cols=231  Identities=21%  Similarity=0.298  Sum_probs=197.2

Q ss_pred             ccccchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCCCeeeeEeecccCCCCCcccccccccccccccccCCCCC
Q 042790          254 YALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKP  333 (617)
Q Consensus       254 ~py~~G~c~lRLmqf~e~Ls~r~~~ndIeYWqkFV~EFFSP~AvlR~tls~~d~~g~~a~Gvf~q~~~~~w~cd~~gsk~  333 (617)
                      .+|... --.|+++++.+|..+.+..|..||+.|..|||.++|+|.  +..|.++|                        
T Consensus        44 ~~y~s~-~e~Ri~emNkRLq~~se~sdN~WWDaFstEFFeDDa~Lt--~~fclEdg------------------------   96 (415)
T KOG2181|consen   44 GNYVSP-LEFRIHEMNKRLQIFSEVSDNQWWDAFSTEFFEDDAKLT--FVFCLEDG------------------------   96 (415)
T ss_pred             CCCcCc-chhhHHHHHHHHHHhcccchhhhHHhhhhhhhcCCceEE--EEEEecCC------------------------
Confidence            456643 568999999999999999999999999999999999994  44555554                        


Q ss_pred             CceeEEcccchhHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEec---CeEEEEeEEEEEEeCcc--c
Q 042790          334 GRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFE---QCRVVREGKLRIVFTPD--L  408 (617)
Q Consensus       334 ~KqFEIt~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~Yd---Gs~Vv~~G~LR~~F~~d--L  408 (617)
                      +|+|.|++.+|||||++.||+||++++++|.+++|. +.||++.+||+.+++++.|+   ...|+.+|+|.+.|..|  +
T Consensus        97 pkRYtIgRtlIPrfFrsIfegG~~eLyyvLkh~ket-~hn~s~~~dcdq~~~iTqhgkp~ft~VctegrL~lEF~fDd~M  175 (415)
T KOG2181|consen   97 PKRYTIGRTLIPRFFRSIFEGGMRELYYVLKHPKET-LHNGSQAYDCDQVLQITQHGKPSFTEVCTEGRLYLEFAFDDVM  175 (415)
T ss_pred             cceeeeccchhHHHHHHHHhcchhhhhhhhcCchhh-hcCCceeeeccceeEEeecCCccceeeeccceEEEEeehhhhh
Confidence            489999999999999999999999999999999775 99999999999999999996   69999999999999876  9


Q ss_pred             ceeEEEEEeeceeecccccchhhhhhHHHHhhhccccccccCCCCCCchhhhhhhhhhhhhhcccccccCCCCCCCCCcc
Q 042790          409 KILSWEFCAWQHEEFLPRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFP  488 (617)
Q Consensus       409 KIEs~EF~~~~HeEyIpR~~L~~qvn~l~q~aqK~qs~i~s~s~gks~eel~kN~n~fl~a~rqLa~~Lp~s~Vn~~Gip  488 (617)
                      ||+.|+|.+++|.|+|||+.|...       |+.         |.              .+..++.++     ++++|++
T Consensus       176 RIK~Wh~~ik~~rElvprsil~~~-------a~~---------dp--------------~~ldq~~kN-----itR~G~~  220 (415)
T KOG2181|consen  176 RIKAWHLEIKRSRELVPRSILQNT-------ADY---------DP--------------EALDQEQKN-----ITRMGFF  220 (415)
T ss_pred             hhhheeeeeeccccccchhhhhcc-------CCC---------Ch--------------hhhChhhcc-----ccccccc
Confidence            999999999999999999998732       111         11              012233333     4899999


Q ss_pred             hhhhhHHHHHHHHhchHHHHHHhHhcCCCHHHHHHHHHhhhcCCCCccchhhhhhccccCCCC
Q 042790          489 KRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQDLLND  551 (617)
Q Consensus       489 ~~vmR~LQIsEVmsqMkdLM~FSk~n~lSP~EALk~yv~~~~~~~~~~~~~~~q~~~~~lp~~  551 (617)
                      +.++++|.+|.|+++|++||+.+|+..|+|+||||..+.    +|||.|..+..++...-|+.
T Consensus       221 nsTlNylrlcvILePMQelMSrhKayalsPRdclKttLF----QkwQrMvaPp~ep~~qkp~~  279 (415)
T KOG2181|consen  221 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLF----QKWQRMVAPPPEPEKQKPAR  279 (415)
T ss_pred             hhhHHHHHHHHHHhHHHHHHHhccccCCCHHHHHHHHHH----HHhhhhhcCCCCCCCCCCch
Confidence            999999999999999999999999889999999999997    67888877776655554554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	617
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 6e-08
 Identities = 70/518 (13%), Positives = 141/518 (27%), Gaps = 173/518 (33%)

Query: 1   MALEAFSDSKYQLAFSSGV--LNQVTGDTMQPSSSNHLLQN-----DGQYRAAVASLLNA 53
           +AL+     K Q      +  LN    +   P +   +LQ      D  + +      N 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 54  SSGNLSGSAANINEGMVTG--------LRN--------------QTIVQETTNYRLSRFS 91
               +    A +   + +         L N              + ++  TT ++     
Sbjct: 224 KL-RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TTRFK-QVTD 279

Query: 92  SLLPNSSSAISMGPQS---HRSASADVYS-YLN-----LP-------PLPVFSSHSSSST 135
            L   +++ IS+   S          +   YL+     LP       P  +      S  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL------SII 333

Query: 136 GSSNTDGSSTLQQTSHLGINSSQPRKRKQQQRGLSATSPPDLHRRQGESSNDKKLDICAS 195
             S  DG +T     H+  +    +     +  L+   P +  +         +L +   
Sbjct: 334 AESIRDGLATWDNWKHVNCD----KLTTIIESSLNVLEPAEYRKMF------DRLSV--- 380

Query: 196 TEMQKK---PRLNTLQL----GSKSEQQNILHSTPEFGAVDIDKMQQQQMRHHQLQQPMH 248
                    P    L L      KS+   +++   ++  V+    ++  +    +   + 
Sbjct: 381 --FPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436

Query: 249 -QVPAAYALHSGVCSRRIM-QYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYD 306
            ++   YALH     R I+  Y         +    Y  +    Y+            Y 
Sbjct: 437 VKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQ----YF------------YS 475

Query: 307 NAGHHA--------FGFFPKAAVD-AW-QCDLCGTKPGRGFEANLEAFPRLNKVMFESGV 356
           + GHH            F    +D  + +  +                           +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN---------------ASGSI 520

Query: 357 IDELLYLDMPHERVQFSGLMILEYGK--AVQETVFEQCRVVREGKLRIVFTPDLKILSWE 414
           ++ L  L                Y       +  +E  R+V            +      
Sbjct: 521 LNTLQQLKF--------------YKPYICDNDPKYE--RLVN----------AI------ 548

Query: 415 FCAWQHEEFLPR---NLVAPQVNQLVQTAQKYE-STIY 448
                  +FLP+   NL+  +   L++ A   E   I+
Sbjct: 549 ------LDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 66/435 (15%), Positives = 112/435 (25%), Gaps = 117/435 (26%)

Query: 213 SEQQ----NIL-HSTPEFGAVDID-KMQQQQMRH--------HQLQQPMHQVPAAYALHS 258
            E Q    +IL      F   + D K  Q   +         H +      V     L  
Sbjct: 12  GEHQYQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFW 69

Query: 259 GVCSR--RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFF 316
            + S+   ++Q       R +   +        E   P    R  +    +  ++    F
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTR-MYIEQRDRLYNDNQVF 126

Query: 317 PKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLM 376
            K  V                        RL   +     + + L    P + V   G +
Sbjct: 127 AKYNV-----------------------SRLQPYL----KLRQALLELRPAKNVLIDG-V 158

Query: 377 ILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQH--EEFLPRNLVAPQVN 434
            L  GK       +   V    K++     D KI    F  W +      P  ++     
Sbjct: 159 -LGSGKTW--VALD---VCLSYKVQCKM--DFKI----F--WLNLKNCNSPETVLEMLQK 204

Query: 435 QLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPKRYVRS 494
            L Q    + S     S+      +                ++    +  L   K Y   
Sbjct: 205 LLYQIDPNWTSRSDHSSN--IKLRI----------------HSIQAELRRLLKSKPYENC 246

Query: 495 LQIAEIVNSMKDLISFSLNS-------NTGPIESLKNYCCEASGSKPLKDES--LEKRSA 545
           L +   V + K   +F+L+             + L       +    L   S  L     
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA---ATTTHISLDHHSMTLTPDEV 303

Query: 546 QDLLNDGRKLVAASPILDNSEND-SSSFTGCGPLA-SCEGATLSPG-----YYERLLRHN 598
           + LL            LD    D         P   S    ++  G      ++ +    
Sbjct: 304 KSLL---------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---- 350

Query: 599 SFNPKLSKVKQEPSL 613
               KL+ +  E SL
Sbjct: 351 -NCDKLTTI-IESSL 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00