Citrus Sinensis ID: 042841

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEHccccHHHHHHHHHHHcccccHcccccccccccccccccEEEEEEccccHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MARGLKGVENVYTQHQPLLFQTMESIIKgrlrdvdypflgnhfqqgrpqdVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII
Flexible Loop (DISEMBL)
MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLgnhfqqgrpqdVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEeaqrtaksssnii
Low Complexity Region (SEG)
MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII
Disordered region (IsUnstruct)
*******VENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFL*****************
Disordered Region (DISOPRED)
**RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLK****************
Disordered Region (DISEMBL)
MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE*************
Disordered Region (DISPRO)
**RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
O49048	569	Vacuolar protein sorting-	yes	no	1.0	0.193	0.818	9e-52
Q9NRW7	570	Vacuolar protein sorting-	yes	no	0.954	0.184	0.460	1e-25
P97390	570	Vacuolar protein sorting-	yes	no	0.954	0.184	0.469	2e-25
O08700	570	Vacuolar protein sorting-	yes	no	0.954	0.184	0.460	2e-25
Q54GE3	563	Vacuolar protein sorting-	yes	no	0.981	0.191	0.495	4e-25
Q09805	558	Vacuolar protein sorting-	yes	no	0.854	0.168	0.448	2e-19
P38932	577	Vacuolar protein sorting-	yes	no	0.836	0.159	0.356	1e-10

>sp|O49048|VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2

 Score =  201 bits (512), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 105/110 (95%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQTMESI +GRLRDVDYPF+G+HFQQGRPQ+V+IF+VGGTT
Sbjct: 460 MARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTT 519

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA NSG+RFILGG+ +LNSKRFLKDLEEAQR ++S S+++
Sbjct: 520 YEESRSVALQNATNSGVRFILGGTAVLNSKRFLKDLEEAQRISRSGSHMV 569

Involved in the protein transport to the vacuole, probably at the level of vesicle fusion at the trans-Golgi network (TGN) and not in transport from the TGN to the prevacuolar compartment. Binds syntaxins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9NRW7|VPS45_HUMAN Vacuolar protein sorting-associated protein 45 OS=Homo sapiens GN=VPS45 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 3   RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
           +GLKGVENVYTQHQP L +T++ +IKGRL++  YP+LG    + RPQD+I+F++GG TYE
Sbjct: 454 KGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIGGATYE 513

Query: 63  ESRSVALENANNSGIRFILGGSVILNSKRFLKDL----------EEAQRTAKSSS 107
           E+ +V   N    G+R +LGG+ + N+K FL+++          E +Q T++S+S
Sbjct: 514 EALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSAS 568

May play a role in vesicle-mediated protein trafficking from the Golgi stack through the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|P97390|VPS45_MOUSE Vacuolar protein sorting-associated protein 45 OS=Mus musculus GN=Vps45 PE=1 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 3   RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
           +GLKGVENVYTQHQP L +T++ +IKGRL++  YP+LG    + RPQD+I+FI+GG TYE
Sbjct: 454 KGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFIIGGATYE 513

Query: 63  ESRSVALENANNSGIRFILGGSVILNSKRFLKDL----------EEAQRTAKSSS 107
           E+ +V   N    G+R +LGG+ I N+K FL+++          E +Q T++S++
Sbjct: 514 EALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEVLASGLHSRSRESSQATSRSAN 568

May play a role in vesicle-mediated protein trafficking from the Golgi stack through the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|O08700|VPS45_RAT Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus GN=Vps45 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 3   RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
           +GLKGVENVYTQHQP L +T++ +IKG+L++  YP+LG    + RPQD+I+F++GG TYE
Sbjct: 454 KGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFVIGGATYE 513

Query: 63  ESRSVALENANNSGIRFILGGSVILNSKRFLKDL----------EEAQRTAKSSS 107
           E+ +V   N    G+R +LGG+ I N+K FL+++          E +Q T++S+S
Sbjct: 514 EALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEVLASGLHSRSRESSQATSRSAS 568

May play a role in vesicle-mediated protein trafficking from the Golgi stack through the trans-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|Q54GE3|VPS45_DICDI Vacuolar protein sorting-associated protein 45 OS=Dictyostelium discoideum GN=vps45 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           + RGL+GV N+YTQH+PLL   ++SI+K +L++  YP+L     + RPQDVIIF+VGG T
Sbjct: 452 VKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGIT 511

Query: 61  YEESRSVALENANNSGI-RFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
           YEE+ +V   N+ N+G+ R +LGG+ ILN ++FL+DL   Q +  SSS+
Sbjct: 512 YEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPSSSS 560

May play a role in vesicle-mediated protein trafficking from the Golgi stack through the trans-Golgi network.

Dictyostelium discoideum (taxid: 44689)

>sp|Q09805|VPS45_SCHPO Vacuolar protein sorting-associated protein 45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps45 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 4/98 (4%)

Query: 3   RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ----QGRPQDVIIFIVGG 58
           +GL+GVENVY QH P L   +  +I+GRL++  +PFL +  +      +PQD+I+ IVGG
Sbjct: 453 KGLRGVENVYIQHNPFLKSILLDLIQGRLKETTHPFLNSETRAQTSNEKPQDIIVVIVGG 512

Query: 59  TTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96
            TYEE+  V+  NA   G+R IL G+ ILNS  ++ D+
Sbjct: 513 ATYEEAHFVSEFNATQPGVRIILAGTTILNSTAYIDDI 550

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38932|VPS45_YEAST Vacuolar protein sorting-associated protein 45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS45 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 9/101 (8%)

Query: 9   ENVYTQHQP-----LLFQTMESIIKGRLRDVD---YPFLGNHFQQGRPQDVIIFIVGGTT 60
           ENVY QH P     L   +  ++ + R +++D   +  +GN   +  PQDVI+F++GG T
Sbjct: 477 ENVYMQHIPEISSLLTDLSKNALFRDRFKEIDTQGHRVIGNQQSKDIPQDVILFVIGGVT 536

Query: 61  YEESRSVALENAN-NSGIRFILGGSVILNSKRFLKDLEEAQ 100
           YEE+R V   N   N+ +R +LGG+ IL++K ++  +  A+
Sbjct: 537 YEEARLVHDFNGTMNNRMRVVLGGTSILSTKEYMDSIRSAK 577

Essential for vacuolar protein sorting. Function in membrane traffic between the Golgi and the vacuole.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
118486620	568	unknown [Populus trichocarpa]	1.0	0.193	0.909	2e-54
224082400	568	predicted protein [Populus trichocarpa]	1.0	0.193	0.909	2e-54
225457759	568	PREDICTED: vacuolar protein sorting-asso	1.0	0.193	0.881	2e-53
356509320	568	PREDICTED: vacuolar protein sorting-asso	1.0	0.193	0.872	2e-52
356515981	568	PREDICTED: vacuolar protein sorting-asso	1.0	0.193	0.863	3e-52
224066745	568	predicted protein [Populus trichocarpa]	1.0	0.193	0.863	8e-52
255570394	537	vacuolar protein sorting-associated, put	1.0	0.204	0.845	1e-51
449462170	568	PREDICTED: vacuolar protein sorting-asso	1.0	0.193	0.845	1e-50
297839579	569	hypothetical protein ARALYDRAFT_476877 [	1.0	0.193	0.827	3e-50
18411376	569	vacuolar protein sorting-associated prot	1.0	0.193	0.818	4e-50

>gi|118486620|gb|ABK95147.1| unknown [Populus trichocarpa]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 108/110 (98%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPF+GNHFQQGRPQDV+IFIVGGTT
Sbjct: 459 MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVVIFIVGGTT 518

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA+NSG RFILGGSV+LNSKRFLKDLEEAQR AKSS+N++
Sbjct: 519 YEESRSVALQNASNSGTRFILGGSVVLNSKRFLKDLEEAQRIAKSSTNVV 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082400|ref|XP_002306679.1| predicted protein [Populus trichocarpa] gi|222856128|gb|EEE93675.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 108/110 (98%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPF+GNHFQQGRPQDV+IFIVGGTT
Sbjct: 459 MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVVIFIVGGTT 518

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA+NSG RFILGGSV+LNSKRFLKDLEEAQR AKSS+N++
Sbjct: 519 YEESRSVALQNASNSGTRFILGGSVVLNSKRFLKDLEEAQRIAKSSTNVV 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457759|ref|XP_002263592.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Vitis vinifera] gi|302142769|emb|CBI19972.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/110 (88%), Positives = 108/110 (98%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQTMESI KGRLRDVDYPF+GNHFQQGRPQDV+IFIVGGTT
Sbjct: 459 MARGLKGVENVYTQHQPLLFQTMESINKGRLRDVDYPFIGNHFQQGRPQDVVIFIVGGTT 518

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRS+AL+NA+NSGIRFILGGSV+LNSKRFLKDLEEAQR A++S+N++
Sbjct: 519 YEESRSIALQNASNSGIRFILGGSVVLNSKRFLKDLEEAQRIARTSTNVV 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509320|ref|XP_003523398.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Glycine max]

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 106/110 (96%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQ MESI+KGRLRDVDYPF+GNHFQQGRPQDVIIFIVGGTT
Sbjct: 459 MARGLKGVENVYTQHQPLLFQIMESIVKGRLRDVDYPFIGNHFQQGRPQDVIIFIVGGTT 518

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA+N+GIRFILGGS +LNSKRFL+DLEEAQR A+SS+ +I
Sbjct: 519 YEESRSVALQNASNTGIRFILGGSSVLNSKRFLRDLEEAQRVARSSTTVI 568

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515981|ref|XP_003526675.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Glycine max]

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/110 (86%), Positives = 106/110 (96%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQ MESI+KGRLRDVDYPF+GNHFQQGRPQDVIIFIVGGTT
Sbjct: 459 MARGLKGVENVYTQHQPLLFQLMESIVKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTT 518

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA+N+G+RFILGGS +LNSKRFL+DLEEAQR A+SS+ +I
Sbjct: 519 YEESRSVALQNASNTGVRFILGGSSVLNSKRFLRDLEEAQRVARSSTTVI 568

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066745|ref|XP_002302194.1| predicted protein [Populus trichocarpa] gi|222843920|gb|EEE81467.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/110 (86%), Positives = 106/110 (96%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVY QHQPLLFQTMESIIKGRLRDVDYPF+GNHFQQGRPQDV++FIVGGTT
Sbjct: 459 MARGLKGVENVYIQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVVVFIVGGTT 518

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA+ SGIRFI+GGS +LNSKRFLKDLEEA+R AKSS+N++
Sbjct: 519 YEESRSVALQNASISGIRFIVGGSAVLNSKRFLKDLEEARRIAKSSTNVV 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570394|ref|XP_002526156.1| vacuolar protein sorting-associated, putative [Ricinus communis] gi|223534533|gb|EEF36232.1| vacuolar protein sorting-associated, putative [Ricinus communis]

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 107/110 (97%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQTMESII+GR+RDVDYPF+GNH+QQGRPQDV+IF+VGGTT
Sbjct: 428 MARGLKGVENVYTQHQPLLFQTMESIIRGRMRDVDYPFVGNHYQQGRPQDVVIFVVGGTT 487

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA+N+GIRFILGGSV+LNSKRFLKDLEE  R A+SSS+++
Sbjct: 488 YEESRSVALQNASNTGIRFILGGSVVLNSKRFLKDLEEGHRIARSSSSMV 537

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462170|ref|XP_004148814.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Cucumis sativus] gi|449518378|ref|XP_004166219.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Cucumis sativus]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 105/110 (95%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPL+ QTMESIIKGRLRDVDYPF+GNHFQQGRPQ+VIIFIVGGTT
Sbjct: 459 MARGLKGVENVYTQHQPLVVQTMESIIKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTT 518

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESR+VAL+NA  SG+RFILGGSV+LNS+RFLKDLEEAQR ++SS+ +I
Sbjct: 519 YEESRAVALQNATTSGVRFILGGSVVLNSRRFLKDLEEAQRISRSSAPVI 568

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839579|ref|XP_002887671.1| hypothetical protein ARALYDRAFT_476877 [Arabidopsis lyrata subsp. lyrata] gi|297333512|gb|EFH63930.1| hypothetical protein ARALYDRAFT_476877 [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 105/110 (95%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQTMESI +GRLRDVDYPF+G+HFQQGRPQ+V+IF+VGGTT
Sbjct: 460 MARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTT 519

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA NSGIRFILGG+ +LNSKRFLKDLEEAQR ++S S+++
Sbjct: 520 YEESRSVALQNATNSGIRFILGGTAVLNSKRFLKDLEEAQRISRSGSHMV 569

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411376|ref|NP_565150.1| vacuolar protein sorting-associated protein 45-like protein [Arabidopsis thaliana] gi|28201912|sp|O49048.2|VPS45_ARATH RecName: Full=Vacuolar protein sorting-associated protein 45 homolog; Short=AtVPS45 gi|3540194|gb|AAC34344.1| AtVPS45p [Arabidopsis thaliana] gi|15215684|gb|AAK91388.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|20855922|gb|AAM26638.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|332197819|gb|AEE35940.1| vacuolar protein sorting-associated protein 45-like protein [Arabidopsis thaliana]

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 105/110 (95%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           MARGLKGVENVYTQHQPLLFQTMESI +GRLRDVDYPF+G+HFQQGRPQ+V+IF+VGGTT
Sbjct: 460 MARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTT 519

Query: 61  YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
           YEESRSVAL+NA NSG+RFILGG+ +LNSKRFLKDLEEAQR ++S S+++
Sbjct: 520 YEESRSVALQNATNSGVRFILGGTAVLNSKRFLKDLEEAQRISRSGSHMV 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:2196025	569	VPS45 "vacuolar protein sortin	1.0	0.193	0.818	1.8e-46
UNIPROTKB|H9L0B9	563	VPS45 "Uncharacterized protein	0.963	0.188	0.490	9e-25
UNIPROTKB|H9L0C0	377	VPS45 "Uncharacterized protein	0.809	0.236	0.561	1.6e-24
ZFIN|ZDB-GENE-060503-526	568	vps45 "vacuolar protein sortin	0.854	0.165	0.542	1.5e-23
DICTYBASE|DDB_G0290213	563	vps45 "Sec1-like family protei	0.963	0.188	0.504	1.8e-23
ASPGD|ASPL0000002925	593	vps45 [Emericella nidulans (ta	0.872	0.161	0.515	2.1e-23
MGI|MGI:891965	570	Vps45 "vacuolar protein sortin	0.854	0.164	0.531	3.1e-23
UNIPROTKB|Q9NRW7	570	VPS45 "Vacuolar protein sortin	0.972	0.187	0.467	4e-23
UNIPROTKB|F6Y241	562	VPS45 "Uncharacterized protein	0.972	0.190	0.467	6.4e-23
UNIPROTKB|F1MDA6	570	VPS45 "Uncharacterized protein	0.972	0.187	0.467	6.7e-23

TAIR|locus:2196025 VPS45 "vacuolar protein sorting 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 90/110 (81%), Positives = 105/110 (95%)

Query:     1 MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
             MARGLKGVENVYTQHQPLLFQTMESI +GRLRDVDYPF+G+HFQQGRPQ+V+IF+VGGTT
Sbjct:   460 MARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTT 519

Query:    61 YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
             YEESRSVAL+NA NSG+RFILGG+ +LNSKRFLKDLEEAQR ++S S+++
Sbjct:   520 YEESRSVALQNATNSGVRFILGGTAVLNSKRFLKDLEEAQRISRSGSHMV 569

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005802 "trans-Golgi network" evidence=IDA;NAS

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006882 "cellular zinc ion homeostasis" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=IGI;RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

UNIPROTKB|H9L0B9 VPS45 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 9.0e-25, P = 9.0e-25
 Identities = 52/106 (49%), Positives = 79/106 (74%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             +GLKGVENVYTQHQPLL +T++ +IKG+L+D  YP+LG +  + RPQD+I+FI+GG TYE
Sbjct:   447 KGLKGVENVYTQHQPLLQETLDQLIKGKLKDSQYPYLGPNTLRDRPQDIIVFIIGGATYE 506

Query:    63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
             E+ +V   N  N G+R +LGG+ I N++ FL+++  +    +S+ +
Sbjct:   507 EALTVYNLNRTNPGVRVVLGGTTIHNTRSFLEEVTASGFRGRSTES 552

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

UNIPROTKB|H9L0C0 VPS45 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 50/89 (56%), Positives = 70/89 (78%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             +GLKGVENVYTQHQPLL +T++ +IKG+L+D  YP+LG +  + RPQD+I+FI+GG TYE
Sbjct:   281 KGLKGVENVYTQHQPLLQETLDQLIKGKLKDSQYPYLGPNTLRDRPQDIIVFIIGGATYE 340

Query:    63 ESRSVALENANNSGIRFILGGSVILNSKR 91
             E+ +V   N  N G+R +LGG+ I N++R
Sbjct:   341 EALTVYNLNRTNPGVRVVLGGTTIHNTRR 369

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

ZFIN|ZDB-GENE-060503-526 vps45 "vacuolar protein sorting 45 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 278 (102.9 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 51/94 (54%), Positives = 71/94 (75%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             +GLKGVENVYTQHQPLL  T++ +IKGRL+D  +P+LG    + RPQD+I+FI+GG TYE
Sbjct:   454 KGLKGVENVYTQHQPLLHDTLDQLIKGRLKDSQFPYLGPSSLRDRPQDIIVFIIGGATYE 513

Query:    63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96
             E+ +V   N    G+R +LGG+ I N+K FL+++
Sbjct:   514 EALTVYNLNRTMPGVRIVLGGTHIHNTKSFLEEV 547

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

DICTYBASE|DDB_G0290213 vps45 "Sec1-like family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 277 (102.6 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 54/107 (50%), Positives = 78/107 (72%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             RGL+GV N+YTQH+PLL   ++SI+K +L++  YP+L     + RPQDVIIF+VGG TYE
Sbjct:   454 RGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYE 513

Query:    63 ESRSVALENANNSGI-RFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
             E+ +V   N+ N+G+ R +LGG+ ILN ++FL+DL   Q +  SSS+
Sbjct:   514 EALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPSSSS 560

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006896 "Golgi to vacuole transport" evidence=ISS

GO:0000139 "Golgi membrane" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000002925 vps45 [Emericella nidulans (taxid:162425)]

 Score = 277 (102.6 bits), Expect = 2.1e-23, P = 2.1e-23
 Identities = 51/99 (51%), Positives = 77/99 (77%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFL--GNHFQQGRPQDVIIFIVGGTT 60
             +GLKGVENVYTQH P L  T++++IKG+L+++ YPFL  G H +  +PQD+IIF+VGGTT
Sbjct:   474 KGLKGVENVYTQHSPRLEATLQNLIKGKLKELQYPFLEGGGHVRD-KPQDIIIFMVGGTT 532

Query:    61 YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99
             YEE++ +   NA++ GIR +L  + + NSK FL+++++A
Sbjct:   533 YEEAKMITQVNASSPGIRVVLASTSVHNSKSFLEEVDDA 571

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0006896 "Golgi to vacuole transport" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

MGI|MGI:891965 Vps45 "vacuolar protein sorting 45 (yeast)" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 50/94 (53%), Positives = 71/94 (75%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             +GLKGVENVYTQHQP L +T++ +IKGRL++  YP+LG    + RPQD+I+FI+GG TYE
Sbjct:   454 KGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFIIGGATYE 513

Query:    63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96
             E+ +V   N    G+R +LGG+ I N+K FL+++
Sbjct:   514 EALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEV 547

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010008 "endosome membrane" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9NRW7 VPS45 "Vacuolar protein sorting-associated protein 45" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 51/109 (46%), Positives = 77/109 (70%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             +GLKGVENVYTQHQP L +T++ +IKGRL++  YP+LG    + RPQD+I+F++GG TYE
Sbjct:   454 KGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIGGATYE 513

Query:    63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA--QRTAKSSSNI 109
             E+ +V   N    G+R +LGG+ + N+K FL+++  +     +K SS +
Sbjct:   514 EALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQV 562

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0007596 "blood coagulation" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|F6Y241 VPS45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 51/109 (46%), Positives = 77/109 (70%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             +GLKGVENVYTQHQP L +T++ +IKG+L++  YP+LG    + RPQD+I+FI+GG TYE
Sbjct:   446 KGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYE 505

Query:    63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA--QRTAKSSSNI 109
             E+ +V   N    G+R +LGG+ + N+K FL+++  +     +K SS +
Sbjct:   506 EALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQV 554

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

UNIPROTKB|F1MDA6 VPS45 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 6.7e-23, P = 6.7e-23
 Identities = 51/109 (46%), Positives = 77/109 (70%)

Query:     3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
             +GLKGVENVYTQHQP L +T++ +IKG+L++  YP+LG    + RPQD+I+FI+GG TYE
Sbjct:   454 KGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYE 513

Query:    63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA--QRTAKSSSNI 109
             E+ +V   N    G+R +LGG+ + N+K FL+++  +     +K SS +
Sbjct:   514 EALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQV 562

GO:0010008 "endosome membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49048	VPS45_ARATH	No assigned EC number	0.8181	1.0	0.1933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	110
pfam00995	554	pfam00995, Sec1, Sec1 family	2e-27
COG5158	582	COG5158, SEC1, Proteins involved in synaptic trans	6e-11

>gnl|CDD|216231 pfam00995, Sec1, Sec1 family

 Score =  104 bits (261), Expect = 2e-27
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 20/114 (17%)

Query: 3   RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFL--------------------GNH 42
              KGV+NV ++++PLL + +E +IKG+L    YP+                        
Sbjct: 441 SLPKGVKNVLSRYKPLLKRILEDLIKGKLDTDSYPYFDPKLANASGPQGSLRSKRPTAAG 500

Query: 43  FQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96
             +  PQ +I+F+VGG TY E+R++   +   +G R I+G + ILN + FL++L
Sbjct: 501 QGRQPPQRIIVFVVGGVTYSEARALYELSKKTNGKRVIIGSTSILNPESFLEEL 554

Length = 554

>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 3   RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRP------------QD 50
           +G+  +ENVY+   PL       ++  RL +          +  RP            Q 
Sbjct: 469 QGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQSLRLSRPKGRSRSNKKIPQQR 528

Query: 51  VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100
           +++F++GG TYEE R +   N + + +R I G + IL    FL +++   
Sbjct: 529 ILVFVIGGVTYEELRVLYELNESQNSVRIIYGSTEILTPAEFLDEVKRLG 578

Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG1299	549	consensus Vacuolar sorting protein VPS45/Stt10 (Se	99.92
KOG1300	593	consensus Vesicle trafficking protein Sec1 [Intrac	99.9
PF00995	564	Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m	99.86
KOG1301	621	consensus Vesicle trafficking protein Sly1 (Sec1 f	99.71
COG5158	582	SEC1 Proteins involved in synaptic transmission an	99.63
KOG1302	600	consensus Vacuolar sorting protein VPS33/slp1 (Sec	99.37
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	83.38
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	80.31

>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.4e-25  Score=181.46  Aligned_cols=99  Identities=57%  Similarity=1.035  Sum_probs=93.9

Q ss_pred             CCCccCCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCCCCCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCeEE
Q 042841            1 MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFI   80 (110)
Q Consensus         1 ~~~~~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~r~~~~~iIVFviGGiTy~E~r~~~~ls~~~~~~~ii   80 (110)
                      +.++++||+|+|++|+|+|+++++++..|+|++..||++.+..++++|+.|||||+||+||||+|.+++++..+++.+++
T Consensus       450 ~~kglkgvENVytQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~s~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvv  529 (549)
T KOG1299|consen  450 FIKGLKGVENVYTQHQPLLKSTLEDLFRGRLKEIDYPFLGSQTSRDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVV  529 (549)
T ss_pred             HhhccCcchhhhhccCHHHHHHHHHHHhcccccCCCcccccccccCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEE
Confidence            46789999999999999999999999999999999999998888999999999999999999999999999877899999


Q ss_pred             EeeccccChHHHHHHHHHh
Q 042841           81 LGGSVILNSKRFLKDLEEA   99 (110)
Q Consensus        81 iGst~il~~~~fl~~L~~l   99 (110)
                      +|||.++|...|++++...
T Consensus       530 LgGttvlntk~f~~di~~a  548 (549)
T KOG1299|consen  530 LGGTTVLNTKSFIDEIMAA  548 (549)
T ss_pred             EcceEEechHHHHHHHhcc
Confidence            9999999999999998753

>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.7e-24  Score=177.09  Aligned_cols=99  Identities=27%  Similarity=0.494  Sum_probs=84.8

Q ss_pred             ccccc--eeccchHHHHHHHHHcCCCCCCCCcccCCCC----------CC--------------CCCCeEEEEEECCCCH
Q 042841            8 VENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLGNHF----------QQ--------------GRPQDVIIFIVGGTTY   61 (110)
Q Consensus         8 v~n~~--sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~----------~r--------------~~~~~iIVFviGGiTy   61 (110)
                      .+++|  |||+|.|++|+|++++++||+..|||++.++          +|              ...+++||||+||+||
T Consensus       468 ~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~~~~Sar~~~~~~~k~~~~~~~~g~ri~VfIiGGvT~  547 (593)
T KOG1300|consen  468 EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGSAATSARYGHPLSNKTPSAFKKPGQRIIVFIIGGVTF  547 (593)
T ss_pred             ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccCccccccccCcccccCcchhhccCceEEEEEeCCccH
Confidence            36677  9999999999999999999999999997543          11              2358999999999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccccCC
Q 042841           62 EESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSS  107 (110)
Q Consensus        62 ~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~~~~  107 (110)
                      +|+|+|||++++ .+++|+||||+|++|.+|++.|+.+....+.++
T Consensus       548 SEmRvaYevs~~-~~~EViiGS~~iltP~~fL~~lk~~~~ked~~~  592 (593)
T KOG1300|consen  548 SEMRVAYEVSEK-LNREVIIGSDHILTPTKFLDDLKLLKFKEDQSL  592 (593)
T ss_pred             HHHHHHHHHHHh-hCceEEECCcccCCHHHHHHHHhhcccccccCC
Confidence            999999999996 789999999999999999999995444444443

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []

Probab=99.86  E-value=6.8e-22  Score=162.44  Aligned_cols=91  Identities=34%  Similarity=0.637  Sum_probs=76.1

Q ss_pred             cCCccccceeccchHHHHHHHHHcCCCC-CCCCcccCCCC----------------------CCCCCCeEEEEEECCCCH
Q 042841            5 LKGVENVYTQHQPLLFQTMESIIKGRLR-DVDYPFLGNHF----------------------QQGRPQDVIIFIVGGTTY   61 (110)
Q Consensus         5 ~~gv~n~~sr~~P~l~~ii~~l~~~~l~-~~~fp~~~~~~----------------------~r~~~~~iIVFviGGiTy   61 (110)
                      .++++++|++|.|+++++++++++++++ ++.||++++..                      ...+++++||||+||+||
T Consensus       449 ~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~vGGvTy  528 (564)
T PF00995_consen  449 PKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGSSFSLRSSKPSRSKTQPSNKPRKRVIVFFVGGVTY  528 (564)
T ss_dssp             CSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----SSSSSS-------------S-SSEEEEEEETEBEH
T ss_pred             cccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCCCCcccccccccccccccccCCCCEEEEEEEcCCcH
Confidence            3579999999999999999999999997 88999987643                      013457899999999999


Q ss_pred             HHHHHHHHHHhcCCC--CeEEEeeccccChHHHHHHH
Q 042841           62 EESRSVALENANNSG--IRFILGGSVILNSKRFLKDL   96 (110)
Q Consensus        62 ~E~r~~~~ls~~~~~--~~iiiGst~il~~~~fl~~L   96 (110)
                      +|++++++++++ .+  ++|+||||+|+||++|+++|
T Consensus       529 ~Ei~~l~~l~~~-~~~~~~iiigsT~il~~~~fl~~L  564 (564)
T PF00995_consen  529 SEIRALRELSKK-LGPGKEIIIGSTSILNPNDFLESL  564 (564)
T ss_dssp             HHHHHHHHHHTT-SSSSSEEEEEESSBE-HHHHHHHH
T ss_pred             HHHHHHHHHHHh-hCCCcEEEEEeCCccCHHHHHHhC
Confidence            999999999996 56  99999999999999999986

They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.

>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.4e-17  Score=138.45  Aligned_cols=101  Identities=24%  Similarity=0.428  Sum_probs=87.8

Q ss_pred             cCCccccc-eeccchHHHHHHHHHcCCC--CCCCCcccCCCCCC----------CCCCeEEEEEECCCCHHHHHHHHHHH
Q 042841            5 LKGVENVY-TQHQPLLFQTMESIIKGRL--RDVDYPFLGNHFQQ----------GRPQDVIIFIVGGTTYEESRSVALEN   71 (110)
Q Consensus         5 ~~gv~n~~-sr~~P~l~~ii~~l~~~~l--~~~~fp~~~~~~~r----------~~~~~iIVFviGGiTy~E~r~~~~ls   71 (110)
                      +.||+|++ .+..-++.++++.+++.+-  ..++|-|+||+.+|          .+.++.|||||||++|-|+..+.+++
T Consensus       506 m~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~~DPk~~k~~~~~~~~~r~~f~eaIVFvVGGGNYiEYqnL~d~~  585 (621)
T KOG1301|consen  506 MEGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLYFDPKLSKGGSSSLPIKRQPFQEAIVFVVGGGNYIEYQNLVDLA  585 (621)
T ss_pred             HhhHHhcCcccccCcHHHHHHHhhCCCCCccccceEeeccccccCCCccccccccchhheEEEEEcCcCeeehhhHHHHH
Confidence            36999999 7999999999999999764  45679999987533          44689999999999999999999999


Q ss_pred             hcC-CCCeEEEeeccccChHHHHHHHHHhhhcccc
Q 042841           72 ANN-SGIRFILGGSVILNSKRFLKDLEEAQRTAKS  105 (110)
Q Consensus        72 ~~~-~~~~iiiGst~il~~~~fl~~L~~l~~~~~~  105 (110)
                      ++. ..++|++|+|.|+||.+|+++|.+|+.+..+
T Consensus       586 krq~~~krIiYGsTeIln~~eFl~qls~Lg~~~~~  620 (621)
T KOG1301|consen  586 KRQQTVKRIIYGSTEILNAREFLEQLSRLGLKMGS  620 (621)
T ss_pred             HhhcccceeEecchhcCCHHHHHHHHHHhcccccC
Confidence            873 3589999999999999999999999987654

>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]

Probab=99.63  E-value=5.5e-16  Score=130.61  Aligned_cols=99  Identities=26%  Similarity=0.408  Sum_probs=81.3

Q ss_pred             ccCCccccceeccchHHHHHHHHHcCCCCCCCCcccC-------CC-----CCCCCCCeEEEEEECCCCHHHHHHHHHHH
Q 042841            4 GLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLG-------NH-----FQQGRPQDVIIFIVGGTTYEESRSVALEN   71 (110)
Q Consensus         4 ~~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~-------~~-----~~r~~~~~iIVFviGGiTy~E~r~~~~ls   71 (110)
                      .+.+..++|++|.|..+++..+++.+++.+..++...       ++     ..+.++++++|||+||+||+|+|++++++
T Consensus       470 ~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~s~~~~~~k~~~~~~~~~~~~~~~VfviGG~ty~E~~~~~e~~  549 (582)
T COG5158         470 GVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQSLRLSRPKGRSRSNKKIPQQRILVFVIGGVTYEELRVLYELN  549 (582)
T ss_pred             CCchHHHHHHhhcchhcccchhhhhhhhcccccchhccceeecccccccccccccccceEEEEEECCeehHHHHHHHHHH
Confidence            4566778899999999999999999887654444333       22     12245789999999999999999999999


Q ss_pred             hcCCCCeEEEeeccccChHHHHHHHHHhhhc
Q 042841           72 ANNSGIRFILGGSVILNSKRFLKDLEEAQRT  102 (110)
Q Consensus        72 ~~~~~~~iiiGst~il~~~~fl~~L~~l~~~  102 (110)
                      .+..+++|++|||.|+||.+|++++..++.+
T Consensus       550 ~~~~~~~ii~Gst~iltp~e~l~~v~~~~~~  580 (582)
T COG5158         550 ESQNSVRIIYGSTEILTPAEFLDEVKRLGGS  580 (582)
T ss_pred             hhcCCeeEEEcCCceecHHHHHHHHHHhccc
Confidence            8633399999999999999999999998764

>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=1.6e-12  Score=109.48  Aligned_cols=90  Identities=21%  Similarity=0.396  Sum_probs=72.5

Q ss_pred             CCccccceeccchHHHHHHHHHcCCCCCCCCccc--------C-----CC--CCCC----CCCeEEEEEECCCCHHHHHH
Q 042841            6 KGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFL--------G-----NH--FQQG----RPQDVIIFIVGGTTYEESRS   66 (110)
Q Consensus         6 ~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~--------~-----~~--~~r~----~~~~iIVFviGGiTy~E~r~   66 (110)
                      .+..++||+|.|+.+++++++++.+.....|..+        +     +.  .++.    ..+.+.|||+||+||+|+++
T Consensus       491 ~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~~~g~~R~~lVff~GG~T~~EIAa  570 (600)
T KOG1302|consen  491 SDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNNSPGALRVTLVFFLGGCTYAEIAA  570 (600)
T ss_pred             ccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhcccccCCCCcceEEEEEECCccHHHHHH
Confidence            4678999999999999999999975444344211        1     00  1122    36789999999999999999


Q ss_pred             HHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841           67 VALENANNSGIRFILGGSVILNSKRFLKDL   96 (110)
Q Consensus        67 ~~~ls~~~~~~~iiiGst~il~~~~fl~~L   96 (110)
                      ++.+++. .+.+++|.+|.++|..++++.+
T Consensus       571 lr~l~~~-~~~~f~i~Tt~ling~~ll~~~  599 (600)
T KOG1302|consen  571 LRFLAKL-EGYRFLIATTGLINGSSLLEAI  599 (600)
T ss_pred             HHHHHhh-cCceEEEEeccccchHHHHHhh
Confidence            9999985 7899999999999999999875

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=83.38  E-value=2.5  Score=30.79  Aligned_cols=44  Identities=16%  Similarity=0.413  Sum_probs=33.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841           51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA   99 (110)
Q Consensus        51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l   99 (110)
                      ..|.+.||+|-+.++.+.+     .+.++++-|+.|.+..+..+.+.++
T Consensus       171 ~~i~v~GGI~~~nv~~l~~-----~GaD~vvvgSai~~~~d~~~~~~~~  214 (220)
T PRK05581        171 ILIEVDGGINADNIKECAE-----AGADVFVAGSAVFGAPDYKEAIDSL  214 (220)
T ss_pred             ceEEEECCCCHHHHHHHHH-----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence            5677889999976655443     4788899899999877776666655

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=80.31  E-value=3.4  Score=28.95  Aligned_cols=45  Identities=22%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841           50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA   99 (110)
Q Consensus        50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l   99 (110)
                      .+-|++.||++-+.++.+.   +  .|.+.+..|+.+....+..+.+..+
T Consensus       150 ~~pv~a~GGi~~~~i~~~~---~--~Ga~~i~~g~~i~~~~~~~~~~~~l  194 (196)
T cd00564         150 EIPVVAIGGITPENAAEVL---A--AGADGVAVISAITGADDPAAAAREL  194 (196)
T ss_pred             CCCEEEECCCCHHHHHHHH---H--cCCCEEEEehHhhcCCCHHHHHHHH
Confidence            4568999999976555443   3  3677777788888766666666554

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
3puk_A	592	Syntaxin-binding protein 3; membrane trafficking,	5e-20
1dn1_A	594	NSEC1, syntaxin binding protein 1; protein-protein	1e-18
1epu_A	591	S-SEC1; parallel beta-sheets, LEFT-hand turn conne	1e-15
1mqs_A	671	SLY1 protein, SLY1P; SM-protein, snare, syntaxin,	2e-14
2xhe_A	650	UNC18; exocytosis, exocytosis complex, snare, neur	3e-10
2xhe_A	650	UNC18; exocytosis, exocytosis complex, snare, neur	2e-06

>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592

 Score = 82.6 bits (203), Expect = 5e-20
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 24/129 (18%)

Query: 3   RGLKGVENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLGN------------------- 41
           R  +  E  +  ++  P +   ME  I  RL   ++P+                      
Sbjct: 460 RKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRT 519

Query: 42  ---HFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98
                 +     +IIF++GG TY E R     +  +     I+G + IL  ++ L D++ 
Sbjct: 520 NYLELDRKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKM 579

Query: 99  AQRTAKSSS 107
             ++    S
Sbjct: 580 LNKSKDKVS 588

>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594

 Score = 78.4 bits (192), Expect = 1e-18
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 23/130 (17%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNH------------------ 42
               +       ++  P++   ME  I+ +L    YP++                     
Sbjct: 464 RKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWH 523

Query: 43  -----FQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97
                 +      +IIFI+GG +  E R        N     ++G + IL  ++ L  L+
Sbjct: 524 KNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLK 583

Query: 98  EAQRTAKSSS 107
           +  +T +  S
Sbjct: 584 KLNKTDEEIS 593

>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591

 Score = 70.0 bits (170), Expect = 1e-15
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 24/114 (21%)

Query: 9   ENVYTQHQPLLFQTMESIIKGRLRDVDYPFL-----------------------GNHFQQ 45
               ++  P +   ME+ ++ +L    YPFL                             
Sbjct: 474 TYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASY 533

Query: 46  GRPQDVIIFIVGGTTYEESRSVA-LENANNSGIRFILGGSVILNSKRFLKDLEE 98
                +IIF+VGG +Y E RS   +     +    ILG + IL  +  L+DL +
Sbjct: 534 KSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRK 587

>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671

 Score = 67.0 bits (162), Expect = 2e-14
 Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 12  YTQHQPLLFQTMESIIKGRLRDVDYPFL---------GNHFQQGRPQDVIIFIVGGTTYE 62
            T     +   + S  K       Y ++             ++      ++F+VGG  Y 
Sbjct: 563 ITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYL 622

Query: 63  ESRSVA--LENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
           E +++     +  ++  + + G + I     FL ++     +  S+++
Sbjct: 623 EYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNSSNND 670

>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650

 Score = 55.0 bits (131), Expect = 3e-10
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 45  QGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAK 104
           +     + +FI G  +Y E R    E + +SG    +G   I     F++ +    +  +
Sbjct: 562 ESAKPKLFVFINGTVSYNEIRCAY-EVSQSSGYEVYIGAHNIATPAEFVELVSLLDKADQ 620

Query: 105 SSS 107
              
Sbjct: 621 DVQ 623

>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 13/71 (18%), Positives = 27/71 (38%)

Query: 1   MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
           M R  + +  V ++  P++   ME I  G+L    YP + +     +P+     +     
Sbjct: 462 MKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDD 521

Query: 61  YEESRSVALEN 71
              + +    N
Sbjct: 522 GPATSARKRGN 532

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
1dn1_A	594	NSEC1, syntaxin binding protein 1; protein-protein	99.94
3puk_A	592	Syntaxin-binding protein 3; membrane trafficking,	99.94
3c98_A	606	Syntaxin-binding protein 1; protein complex, alter	99.91
1epu_A	591	S-SEC1; parallel beta-sheets, LEFT-hand turn conne	99.9
2xhe_A	650	UNC18; exocytosis, exocytosis complex, snare, neur	99.9
1mqs_A	671	SLY1 protein, SLY1P; SM-protein, snare, syntaxin,	99.86

>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A

Probab=99.94  E-value=2.1e-27  Score=198.26  Aligned_cols=103  Identities=23%  Similarity=0.449  Sum_probs=89.2

Q ss_pred             ccCCccccc--eeccchHHHHHHHHHcCCCCCCCCcccCCCC----------CC-------------CCCCeEEEEEECC
Q 042841            4 GLKGVENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLGNHF----------QQ-------------GRPQDVIIFIVGG   58 (110)
Q Consensus         4 ~~~gv~n~~--sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~----------~r-------------~~~~~iIVFviGG   58 (110)
                      ..++++|+|  |||+|.|+++++++++|+|+++.|||+.+.+          .|             .+.+++||||+||
T Consensus       465 k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~~~~~~~~~~riivFivGG  544 (594)
T 1dn1_A          465 KERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGG  544 (594)
T ss_dssp             CCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCCEEEEEEETC
T ss_pred             ccCCCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCccccccccccccccccccCCccccccCCcEEEEEeCC
Confidence            345889999  6999999999999999999999999996431          11             1245789999999


Q ss_pred             CCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccccC
Q 042841           59 TTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSS  106 (110)
Q Consensus        59 iTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~~~  106 (110)
                      +||+|+|++|++++...+++|+||||+|+||.+|+++|..|++++.+.
T Consensus       545 ~Ty~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~~l~~l~~~~~~~  592 (594)
T 1dn1_A          545 VSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEI  592 (594)
T ss_dssp             EEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCSSCC
T ss_pred             ccHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCCcccc
Confidence            999999999999987557999999999999999999999999877654

>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A

Probab=99.94  E-value=4.8e-27  Score=196.03  Aligned_cols=102  Identities=24%  Similarity=0.486  Sum_probs=86.1

Q ss_pred             CccCCccccc--eeccchHHHHHHHHHcCCCCCCCCcccCCCC----------CC------------CCCCeEEEEEECC
Q 042841            3 RGLKGVENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLGNHF----------QQ------------GRPQDVIIFIVGG   58 (110)
Q Consensus         3 ~~~~gv~n~~--sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~----------~r------------~~~~~iIVFviGG   58 (110)
                      |..++++|+|  |||+|.++++++++++++|+++.|||+.+.+          .|            .+++++||||+||
T Consensus       460 rk~~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~~~~~~~~~riiVFivGG  539 (592)
T 3puk_A          460 RKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNYLELDRKNGSRLIIFVIGG  539 (592)
T ss_dssp             CCCCCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC--------------------CCCCCCCCCSCCSEEEEEEETC
T ss_pred             cccCCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccCCccccccccccccCccccccCCCeEEEEEeCC
Confidence            3456789999  6999999999999999999999999986421          01            1246899999999


Q ss_pred             CCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccc
Q 042841           59 TTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAK  104 (110)
Q Consensus        59 iTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~  104 (110)
                      +||+|+|++|++++...+++|+||||+|+||++|+++|..++++++
T Consensus       540 vTysE~r~~~els~~~~~~~vilG~T~i~np~~fl~~l~~l~~~~~  585 (592)
T 3puk_A          540 ITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLNKSKD  585 (592)
T ss_dssp             EEHHHHHHHHHHHHHCCSSEEEEEESSEECHHHHHHHHSSTTSCCC
T ss_pred             cCHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCccc
Confidence            9999999999999975569999999999999999999999998765

>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A

Probab=99.91  E-value=8.1e-25  Score=181.83  Aligned_cols=100  Identities=22%  Similarity=0.432  Sum_probs=87.2

Q ss_pred             cCCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------CCCCCeEEEEEECCCCH
Q 042841            5 LKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ-----------------------QGRPQDVIIFIVGGTTY   61 (110)
Q Consensus         5 ~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~-----------------------r~~~~~iIVFviGGiTy   61 (110)
                      ..+..+.||||.|.++++++++++++|+++.||++++...                       +..++++||||+||+||
T Consensus       480 ~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy  559 (606)
T 3c98_A          480 ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSL  559 (606)
T ss_dssp             CCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCSEEEEEEETCEEH
T ss_pred             CcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCcccccccccccccCCccccCCCCCCCCCCEEEEEEECCcCH
Confidence            4567788999999999999999999999999999975320                       12357899999999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccc
Q 042841           62 EESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAK  104 (110)
Q Consensus        62 ~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~  104 (110)
                      +|+|+++++++++.+++|+||||+|+||++|+++|.+|+++.+
T Consensus       560 ~E~~~l~~ls~~~~~~~viiGsT~Iln~~~fl~~L~~L~k~~~  602 (606)
T 3c98_A          560 NEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDE  602 (606)
T ss_dssp             HHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCCS
T ss_pred             HHHHHHHHHHHHcCCcEEEEEeCCeeCHHHHHHHHHHhCCCch
Confidence            9999999999865678999999999999999999999998654

>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A

Probab=99.90  E-value=1.2e-23  Score=174.26  Aligned_cols=97  Identities=27%  Similarity=0.437  Sum_probs=84.9

Q ss_pred             cCCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------CCCCCeEEEEEECCCCH
Q 042841            5 LKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ-----------------------QGRPQDVIIFIVGGTTY   61 (110)
Q Consensus         5 ~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~-----------------------r~~~~~iIVFviGGiTy   61 (110)
                      .+++.++|+||.|.+++++|++++++++++.||+++++..                       ...++++|||||||+||
T Consensus       470 ~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~viVF~vGG~Ty  549 (591)
T 1epu_A          470 QADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISY  549 (591)
T ss_dssp             CSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------CCCCEEEEEEETCBCH
T ss_pred             CCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCccccCCccccccCcccCCCCccccCCCCeEEEEEECCCCH
Confidence            3567899999999999999999999999999999976420                       01245699999999999


Q ss_pred             HHHHHHHHHHhc-CCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841           62 EESRSVALENAN-NSGIRFILGGSVILNSKRFLKDLEEAQR  101 (110)
Q Consensus        62 ~E~r~~~~ls~~-~~~~~iiiGst~il~~~~fl~~L~~l~~  101 (110)
                      +|++++++++++ ..+++|+||||+|+||++|+++|..|++
T Consensus       550 ~E~~~l~~l~~~~~~~~~viigsT~i~n~~~fl~~l~~l~~  590 (591)
T 1epu_A          550 SEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISN  590 (591)
T ss_dssp             HHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhhccCCCeEEEecCCcCCHHHHHHHHHHhcC
Confidence            999999999983 4689999999999999999999999876

>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.90  E-value=8.6e-24  Score=177.43  Aligned_cols=97  Identities=21%  Similarity=0.357  Sum_probs=84.1

Q ss_pred             CCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------------------------
Q 042841            6 KGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ-----------------------------------------   44 (110)
Q Consensus         6 ~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~-----------------------------------------   44 (110)
                      ++.+++|+||.|.++++++++++++|+++.||+++++..                                         
T Consensus       467 ~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w~~~~~~~~~~~~~  546 (650)
T 2xhe_A          467 RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPST  546 (650)
T ss_dssp             CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC------------------------------------
T ss_pred             cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            345889999999999999999999999999999864210                                         


Q ss_pred             ---------------CCCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhcc
Q 042841           45 ---------------QGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTA  103 (110)
Q Consensus        45 ---------------r~~~~~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~  103 (110)
                                     ..+++++||||+||+||+|+|++|++++. .+++|+||||+|+||++|+++|..+++++
T Consensus       547 ~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~-~~~~viigsT~Iln~~~fl~~l~~l~~~~  619 (650)
T 2xhe_A          547 PSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQS-SGYEVYIGAHNIATPAEFVELVSLLDKAD  619 (650)
T ss_dssp             ---------------CCCSCEEEEEEEEEECHHHHHHHHHHHTT-SSSEEEEEEEEECCHHHHHHHHHTTTC--
T ss_pred             ccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhc-CCCEEEEeeCCcCCHHHHHHHHHHcCCCc
Confidence                           02357899999999999999999999974 79999999999999999999999998754

>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1

Probab=99.86  E-value=1.8e-22  Score=170.04  Aligned_cols=101  Identities=14%  Similarity=0.349  Sum_probs=87.5

Q ss_pred             cCCccccc-eeccchHHHHHHHHHcC-----C--CCCCCCcccCCCC---------CCCCCCeEEEEEECCCCHHHHHHH
Q 042841            5 LKGVENVY-TQHQPLLFQTMESIIKG-----R--LRDVDYPFLGNHF---------QQGRPQDVIIFIVGGTTYEESRSV   67 (110)
Q Consensus         5 ~~gv~n~~-sr~~P~l~~ii~~l~~~-----~--l~~~~fp~~~~~~---------~r~~~~~iIVFviGGiTy~E~r~~   67 (110)
                      ++||.|+| .++.|++++++++++++     +  ++.+.||+++|+.         .+.+++++|||||||+||+|++++
T Consensus       548 ~~~v~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~~~~~~~~~~~~~~~~~viVFvVGG~Ty~E~~~l  627 (671)
T 1mqs_A          548 ISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNL  627 (671)
T ss_dssp             HHHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHH
T ss_pred             HHhHHhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCCCCcCCCCCCCcccCCCCeEEEEEECCccHHHHHHH
Confidence            45689999 89999999999999998     4  6678999998652         234569999999999999999999


Q ss_pred             HHHHhcC--CCCeEEEeeccccChHHHHHHHHHhhhcccc
Q 042841           68 ALENANN--SGIRFILGGSVILNSKRFLKDLEEAQRTAKS  105 (110)
Q Consensus        68 ~~ls~~~--~~~~iiiGst~il~~~~fl~~L~~l~~~~~~  105 (110)
                      ++++++.  .+++|+||||+|+||++|+++|..|++..-+
T Consensus       628 ~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l~~~~~~  667 (671)
T 1mqs_A          628 QEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNSS  667 (671)
T ss_dssp             HHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhccCCCceEEEeeccccCHHHHHHHHHHhCccccc
Confidence            9999862  4799999999999999999999999876433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1dn1a_	589	e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no	8e-24
d1epua_	590	e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor	7e-23
d1mqsa_	653	e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha	6e-17

>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.0 bits (228), Expect = 8e-24
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 23/118 (19%)

Query: 4   GLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR 47
            +       ++  P++   ME  I+ +L    YP++                  H+ + +
Sbjct: 464 RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNK 523

Query: 48  -------PQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98
                     +IIFI+GG +  E R        N     ++G + IL  ++ L  L++
Sbjct: 524 APGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKK 581

>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score = 89.4 bits (221), Expect = 7e-23
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 26/124 (20%)

Query: 1   MARGLKGVENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLG------------------ 40
             R  +  ++ Y  ++  P +   ME+ ++ +L    YPFL                   
Sbjct: 463 HNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGH 522

Query: 41  -----NHFQQGRPQDVIIFIVGGTTYEESRSVA-LENANNSGIRFILGGSVILNSKRFLK 94
                          +IIF+VGG +Y E RS   +     +    ILG + IL  +  L+
Sbjct: 523 WHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLR 582

Query: 95  DLEE 98
           DL +
Sbjct: 583 DLRK 586

>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (177), Expect = 6e-17
 Identities = 14/113 (12%), Positives = 41/113 (36%), Gaps = 19/113 (16%)

Query: 5   LKGVENVYTQHQPL--------LFQTMESIIKGRLRDVDYPFL---------GNHFQQGR 47
           + G++ +  + + +        +   + S  K       Y ++             ++  
Sbjct: 534 ISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQS 593

Query: 48  PQDVIIFIVGGTTYEESRSVAL--ENANNSGIRFILGGSVILNSKRFLKDLEE 98
               ++F+VGG  Y E +++     +  ++  + + G + I     FL ++  
Sbjct: 594 YNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISR 646

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1epua_	590	Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig	99.88
d1dn1a_	589	Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax	99.88
d1mqsa_	653	Sly1P protein {Baker's yeast (Saccharomyces cerevi	99.76
d1w5fa2	121	Cell-division protein FtsZ {Thermotoga maritima [T	82.47

>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]}

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

Probab=99.88  E-value=7.6e-23  Score=166.14  Aligned_cols=95  Identities=27%  Similarity=0.453  Sum_probs=82.0

Q ss_pred             ccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------CCCCCeEEEEEECCCCHHHH
Q 042841            8 VENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ-----------------------QGRPQDVIIFIVGGTTYEES   64 (110)
Q Consensus         8 v~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~-----------------------r~~~~~iIVFviGGiTy~E~   64 (110)
                      ..+.|+||.|.+++++++++++++++..||++++..+                       ..+++++|||||||+||+|+
T Consensus       472 ~~y~~s~y~Pli~~lve~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVfvvGGvTy~Ei  551 (590)
T d1epua_         472 HTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEM  551 (590)
T ss_dssp             CSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------CCCCEEEEEEETCBCHHHH
T ss_pred             ccceeecchHHHHHHHHHHHhCCCCccccccccCCCCCcccccccccccCcccCCCCccccCCCCEEEEEEECCcCHHHH
Confidence            3455699999999999999999999999999874310                       12457899999999999999


Q ss_pred             HHHHHHHhc-CCCCeEEEeeccccChHHHHHHHHHhhhc
Q 042841           65 RSVALENAN-NSGIRFILGGSVILNSKRFLKDLEEAQRT  102 (110)
Q Consensus        65 r~~~~ls~~-~~~~~iiiGst~il~~~~fl~~L~~l~~~  102 (110)
                      +++++++++ +.+++|+||||+|+||++|+++|.+|+.|
T Consensus       552 ~~l~~l~~~~~~~~~iiiGsT~i~n~~~fl~~l~~l~~~  590 (590)
T d1epua_         552 RSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP  590 (590)
T ss_dssp             HHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHhhCCCcEEEEEeCCeecHHHHHHHHHhhcCC
Confidence            999999985 35899999999999999999999999864

>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=6.7e-23  Score=166.65  Aligned_cols=100  Identities=22%  Similarity=0.432  Sum_probs=86.2

Q ss_pred             cCCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------CCCCCeEEEEEECCCCH
Q 042841            5 LKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ-----------------------QGRPQDVIIFIVGGTTY   61 (110)
Q Consensus         5 ~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~-----------------------r~~~~~iIVFviGGiTy   61 (110)
                      ..+.++.|+||.|.++++++++++++++.+.||++.+...                       ...++++|||||||+||
T Consensus       465 ~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVF~vGGvTy  544 (589)
T d1dn1a_         465 ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSL  544 (589)
T ss_dssp             CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCCEEEEEEETCEEH
T ss_pred             CcccccccccchHHHHHHHHHHHhCCCCcccCcccCCCccccccccccccccccccccCCCCcCCCCCEEEEEEECCcCH
Confidence            4567888999999999999999999999999999864320                       12357899999999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccc
Q 042841           62 EESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAK  104 (110)
Q Consensus        62 ~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~  104 (110)
                      +|++++++++++..+++|+||||+|+||++|+++|.+|+++..
T Consensus       545 ~E~~~l~~l~~~~~~~~iiiGsT~iln~~~fl~~l~~L~~~~~  587 (589)
T d1dn1a_         545 NEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDE  587 (589)
T ss_dssp             HHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCSS
T ss_pred             HHHHHHHHHHHHcCCceEEEEeCCEecHHHHHHHHHHhCCccc
Confidence            9999999999864457999999999999999999999998753

>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.1e-18  Score=142.73  Aligned_cols=98  Identities=13%  Similarity=0.336  Sum_probs=76.5

Q ss_pred             CCccccceeccc-hHHHHHHHHHcCCCC-------CCCCcccCCCCC---------CCCCCeEEEEEECCCCHHHHHHHH
Q 042841            6 KGVENVYTQHQP-LLFQTMESIIKGRLR-------DVDYPFLGNHFQ---------QGRPQDVIIFIVGGTTYEESRSVA   68 (110)
Q Consensus         6 ~gv~n~~sr~~P-~l~~ii~~l~~~~l~-------~~~fp~~~~~~~---------r~~~~~iIVFviGGiTy~E~r~~~   68 (110)
                      +|+.+++..+.+ ++.++++.+++...+       .+.|++++|+..         +.+++++|||||||+||+|+|+++
T Consensus       535 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVF~vGGvTy~Ei~~l~  614 (653)
T d1mqsa_         535 SGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQ  614 (653)
T ss_dssp             HHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHHH
T ss_pred             HhhhhcCccCCCcccchhhHhhhcchhhccccccccccccccCccccCCCCCCCcccCCCCEEEEEEECCcCHHHHHHHH
Confidence            456667754443 467888888765432       357888876532         234678999999999999999999


Q ss_pred             HHHhcC--CCCeEEEeeccccChHHHHHHHHHhhhcc
Q 042841           69 LENANN--SGIRFILGGSVILNSKRFLKDLEEAQRTA  103 (110)
Q Consensus        69 ~ls~~~--~~~~iiiGst~il~~~~fl~~L~~l~~~~  103 (110)
                      +++++.  .+++|+||||+|+||++|+++|.+|+++.
T Consensus       615 ~l~~~~~~~~~~iiiGsT~iin~~~fl~~l~~L~~~~  651 (653)
T d1mqsa_         615 EWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASN  651 (653)
T ss_dssp             HHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCCCcEEEEeeCCeecHHHHHHHHHHhCCCC
Confidence            999852  47899999999999999999999998764

>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=82.47  E-value=4  Score=25.53  Aligned_cols=58  Identities=10%  Similarity=0.115  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHcCCCCCCCCcccCCCCCCCCCCeEEEEEECC--CCHHHHHHHHHHHhc--CCCCeEEEeec
Q 042841           18 LLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGG--TTYEESRSVALENAN--NSGIRFILGGS   84 (110)
Q Consensus        18 ~l~~ii~~l~~~~l~~~~fp~~~~~~~r~~~~~iIVFviGG--iTy~E~r~~~~ls~~--~~~~~iiiGst   84 (110)
                      ...+.+++.+++.|-+..   +      ..-+.++|.|.||  +|++|+..+-+.-++  .++.+|+.|.+
T Consensus        33 ra~~Av~~Al~sPLld~~---i------~~A~gvLv~i~~g~d~sl~ei~~~~~~i~~~~~~da~ii~G~~   94 (121)
T d1w5fa2          33 RAREAAKKAMESKLIEHP---V------ENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLI   94 (121)
T ss_dssp             HHHHHHHHHHTCTTCCSC---G------GGCSEEEEEEEECTTCCHHHHHHHHHHHHTTSCTTSEEEEEEE
T ss_pred             hHHHHHHHHHhCcccccc---c------cccceEEEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeE
Confidence            467788888888664311   1      1237899999997  899999988776654  34668888754