Citrus Sinensis ID: 042857

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400----

MKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDKRKRSASASKKRRSKIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENEWDRLLRVRLGALLVLAPIIISLHFMCTVTVG

cccccccHHHHHHHcHHHccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHccccccccccccccccccEEEEEEcHHHHHHHHHccccccccEEEEEccccccccccHHHHHHHccccccEEEEccccccccHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHcccHHcccHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHcHHHHHccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHccccccccEEEccccccHHHHHHHHHHHcccccccEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHEEEEEEEEEcc

cccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHEEEEccccEEEEEccccccEEEEEccccccccccccccccccccccccccccccHHHHHccccccEEcccccccccccccHHHHHHcccccccHcccccccccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccHcHcccccccccccHHHccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEcccccccEEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEcEEEccccccccccccccccccccccccccccHHHHccHHcccccccHcccHHHHccccccccccccccccccccccccccccEEccccccccEEEccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccEEEEEEEEcccccccccHccHHHHHHHHHHHHHHHHHHHcccccccccccHEEHHHEEEEccccccccEEEEEEccccccccccccHccccHHHHHHHHHHHHcHHHHHccccccccccccccccccccccEEEcccccHcccccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcEEEccccccccccccEEEEEEEEEHHHHHccHHHHccccEEEEEEEcHHHcccccHHHHHHHHHcccccEEEEccccHHccHHHHHHHHHHccHHHcccHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHccccccEEEEEEEEccccccEEEccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHcHcHHEEcccccHHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHHccccEEcccccccccccccccEccccccEEEccHHHHHHHHHHHccccccHHHcccccccccccEEEEEEcccccHHHHHHcccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHcHHHEEEHHEcEEEcc

mkdnssststminrnwvlkrkrrklpcgpglsngkeenlvtsesprntpsAKRRLKNeinadrsstkkkgndgyyYECVICdlggnllccdscprtyhlqcldpplkripngkwqcpkctqkndqlkpisnldSISKRARSKIItiksqsgvkssgadkvSQIFGNSIlarkrsnkgKSVLALGVKSLEKsldssqvdvscstkpentsagvpvegssscpndddekqlnasptdsladtkfhpaeevlphsqvtkseqndevpvekheksstngssGIKFVLAIgaserdrkrkpevkdedsqkKLRVDKRKRSASASkkrrskigtlspgtsklhekqrtnndevsASLCevdvgtkgldaqrkdelaeettdpldksdkagvhvneiplckdivpfELQQVDRVlgcrvkgddtssschisatatddrhsddflvsENHNKILEEnlacdtdldaEVTENLAELspnvirssdeecmkndigvdrIQVYRRSVTKEckvtkeckgenaidllreddkdsdpvavngkvqdesavstedlgerndkmvvedadvslrdnegltvSEIHITcestdkdvdvgkktsgsvakrvqepavtesaqvkGKAVSYEFLVKWVGksnihnswipesQLKVLAKRKLENYKAKYGTTVINICDerwkqpqrvislrsskdgtreAFVKwtglpydectwekldepalekysHLTDLFVQFERQtlkkdasedelprgkgdcqqSEIVALTeqpeelkggalfphQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEfkaklpclvlvplstmpnWLAEFALwapnlnvveYHGCAKARAIIRQYewhasdpdnlnkktssyKFNVLLTTYEMILadsshlrgvpweVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLltgtplqnnIGEMYNLLnflqpasfpslssfEEKFNDLTTTQKVEELKKLVAPHMLRRLKKdamqnippktermvpveLSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKvcnhpylipgtepdsgsvEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLniefgpktyervdgsvsvgdRQAAITRFNQDKSRFVFLLSTRscglginlatadtviiydsdfnphadIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQlfvnksgsqkEVEDILRWGTeelfndspgingkdmgennTSIEEAVRDLEQKHrkrggglgdvyqdkctegstkivwDENAIARLLdrsnlqsgstdlaegdlendmlgsvkatewneettedqaespvaavddasaenserkeenavtgieenEWDRLLRVRLGALLVLAPIIISLHFMCTVTVG

mkdnssststminrnwvlkrkrrklpcgpglsngkeenlvtsesprntpsakrrlkneinadrsstkkkgndgyYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQcpkctqkndqlkpisnldsisKRARSKIitiksqsgvkssgadkvSQIFgnsilarkrsnkgKSVLALGVKSleksldssqvdvscstkpentsagvpvegssscpnddDEKQLNASPTDSLADTKFHPAeevlphsqvtkseqndevpvekheksstngssgikfvlaigaserdrkrkpevkdedsqkklrvdkrkrsasaskkrrskigtlspgtsklhekqrtnndevsaslcevdvgtkgldaqrkdelaeettdpldksdkagvHVNEIPLCKDIVPFELQQVDRVLGCrvkgddtssschisatatddrhsdDFLVSENHNKILEENLACDTDLDAEVTENLAElspnvirssdeecmkndigvdriqvyrrsvtkeckvtkeckgenaidllreddkdsdpvavngkvqdesavstedlgerndkmvvedadvslrdnegltvseihitcestdkdvdvgKKTSgsvakrvqepavtesaqvkgkaVSYEFLVKWVGKsnihnswipesqLKVLAKRKLENykakygttvinicderwkqpqrvislrsskdgtreafvkwtglpydeCTWEKLDEPALEKYSHLTDLFVQFERQTLkkdasedelprgkgdcqQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWhasdpdnlnkktSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLvaphmlrrlkkdamqnippktermvpvelSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAitrfnqdksrFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAkkklmldqlfvnksgsqkeVEDILRWGTEelfndspgingkdmgeNNTSIEEAVRDLEQKHrkrggglgdvyqdkcTEGSTKIVWDENAIARLldrsnlqsgstdlaegdlendMLGSVKATEWNEettedqaespvaavddasaenserkeenavtgieenewdRLLRVRLGALLVLAPIIISLHFMCTVTVG

MKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDkrkrsasaskkrrskIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRlknsgsklfsllnsfsfQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENEWDrllrvrlgallvlaPIIISLHFMCTVTVG

***************WV******************************************************DGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT****************************************************************************************************************************************************************FVLA***************************************************************************************************GVHVNEIPLCKDIVPFELQQVDRVLGCRVKG*********************FLVS*NHNKILEENLACDTDLDAEVTENLA*************CMKNDIGVDRIQVYRRSVTKECKVTKECKGENAI***************************************************LTVSEIHITC********************************KGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFE***********************************KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWH**************KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSL******F**L**********KLVA**********************VPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG**KEVEDILRWGTEELF***********************************LGDVYQDKCTEGSTKIVWDENAIARLL***************************************************************GIEENEWDRLLRVRLGALLVLAPIIISLHFMCTVT**

****************************************************************************ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KTSGSVA*******************SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG*****ICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTD*******************************VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ**************LNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN*****KEVEDILRWGTEE*****************TSIEEA********************DKCTEGSTKIVWDENAIARLLDRS*******************************************************************DRLLRVRLGALLVLAPIIISLHFMCTVTVG

**********MINRNWVLKRKRRKLPCGPGLSNG******************RRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIK***********KVSQIFGNSILARKRSNKGKSVLALGVKSLE********************************************TDSLADTKFHPAEEVLPHSQ**********************SSGIKFVLAIGAS**************************************GTLSPG*************EVSASLCEVDVGTKGLDAQ**************KSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRV**********ISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKD***************************GKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLK**************CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATE**********************************GIEENEWDRLLRVRLGALLVLAPIIISLHFMCTVTVG

**********************************************************************NDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKR*R*K********************************************SLEKSLDSSQVDVS*****************************************************************************GIKFVLAIGAS****************************************************************************************LDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGD*************************************************************************************************************************************************************CESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQT***********RG*GDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPG*NGKDMGENNTSIEEAVRDLEQKH******LGDVYQD*CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEET**********************KEENAVTGIEENEWDRLLRVRLGALLVLAPIIISLHFMCTVTVG

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1404	2.2.26 [Sep-21-2011]
Q8TDI0		1954	Chromodomain-helicase-DNA	yes	no	0.537	0.385	0.403	1e-160
Q9S775		1384	CHD3-type chromatin-remod	no	no	0.440	0.447	0.450	1e-158
Q12873		2000	Chromodomain-helicase-DNA	no	no	0.491	0.345	0.423	1e-157
Q14839		1912	Chromodomain-helicase-DNA	no	no	0.484	0.355	0.430	1e-153
Q6PDQ2		1915	Chromodomain-helicase-DNA	no	no	0.484	0.355	0.428	1e-153
O97159		1982	Chromodomain-helicase-DNA	yes	no	0.448	0.317	0.422	1e-148
Q22516		1787	Chromodomain-helicase-DNA	yes	no	0.493	0.387	0.398	1e-147
G5EBZ4		1829	Protein let-418 OS=Caenor	no	no	0.490	0.376	0.394	1e-144
O16102		892	Chromodomain-helicase-DNA	no	no	0.440	0.693	0.428	1e-142
P32657		1468	Chromo domain-containing	yes	no	0.437	0.418	0.421	1e-135

>sp\|Q8TDI0\|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1	Back alignment and function desciption

 Score =  566 bits (1459), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 348/862 (40%), Positives = 487/862 (56%), Gaps = 108/862 (12%)

Query: 596  EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK------- 648
            EP++     ++G     EF VKW G S  H SW+ E QL++       NY+ K       
Sbjct: 494  EPSLPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPP 552

Query: 649  ---YGT--------------TVINICDER---------WKQPQRVISLRSSKDGTREAFV 682
               YG+               +    +ER         W    R+++    K G     +
Sbjct: 553  PFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDVHYLI 612

Query: 683  KWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDA-------------SEDEL 729
            KW  LPYD+CTWE +D+  +  Y +L   +       L +D               +D+ 
Sbjct: 613  KWKDLPYDQCTWE-IDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQ 671

Query: 730  PRGKGDCQQSEIVALTEQPEEL--KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGK 787
             +          V   +QP  +   GG L P+QLE LNWLR  W +  + ILADEMGLGK
Sbjct: 672  EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 731

Query: 788  TVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIR 847
            TV    F+ SLY E  +K P LV  PLST+ NW  EF +WAP+  VV Y G  ++R++IR
Sbjct: 732  TVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIR 791

Query: 848  QYEWHASDPDNLN-------KKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHR 900
            + E+   D    +       KK    KF+VLLT+YE+I  D + L  + W  LVVDE HR
Sbjct: 792  ENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHR 851

Query: 901  LKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDL 960
            LKN+ SK F +LNS+   +++LLTGTPLQNN+ E+++LLNFL P  F +L  F E+F D+
Sbjct: 852  LKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADI 911

Query: 961  TTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQIL 1020
            +   ++++L  L+ PHMLRRLK D  +N+P KTE +V VELS +Q +YY+ +LT+N++ L
Sbjct: 912  SKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEAL 971

Query: 1021 RNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT---EPDSGSVEFLHEMRIKASAKLTLLH 1077
             + G G  Q S+LNI+M L+K CNHPYL P      P   +  +     +K+S KL LL 
Sbjct: 972  NSKGGG-NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQ 1030

Query: 1078 SMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137
             MLK L  EGHRVLIFSQMTK+LD+LED+L  E+    YER+DG ++ G RQ AI RFN 
Sbjct: 1031 KMLKKLRDEGHRVLIFSQMTKMLDLLEDFL--EYEGYKYERIDGGITGGLRQEAIDRFNA 1088

Query: 1138 DKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRL 1196
              + +F FLLSTR+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR 
Sbjct: 1089 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1148

Query: 1197 VVRASVEERILQLAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGIN 1249
            V RASVEERI Q+AK+K+ML  L V     +KSGS  ++E++DIL++GTEELF D     
Sbjct: 1149 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD----- 1203

Query: 1250 GKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQ----------DKCTEGSTKIVWDENA 1299
              D+    +  +  V  +      +GG L    +          +K  E S+ I +D+ A
Sbjct: 1204 --DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAA 1261

Query: 1300 IARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAESPVAAVDDASAEN 1357
            I++LLDR+   +  T+L      N+ L S K  ++   EE   ++ E  +          
Sbjct: 1262 ISKLLDRNQDATDDTELQN---MNEYLSSFKVAQYVVREEDGVEEVEREII--------- 1309

Query: 1358 SERKEENAVTGIEENEWDRLLR 1379
              ++EEN    ++ + W++LLR
Sbjct: 1310 --KQEEN----VDPDYWEKLLR 1325

May play a role in the development of the nervous system and the pathogenesis of neural tumors.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1	Back alignment and function description

>sp\|Q12873\|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3	Back alignment and function description

>sp\|Q14839\|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2	Back alignment and function description

>sp\|Q6PDQ2\|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1	Back alignment and function description

>sp\|O97159\|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2	Back alignment and function description

>sp\|Q22516\|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2	Back alignment and function description

>sp\|G5EBZ4\|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1	Back alignment and function description

>sp\|O16102\|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3	Back alignment and function description

>sp\|P32657\|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1404
359472760		2355	PREDICTED: uncharacterized protein LOC10	0.975	0.581	0.712	0.0
224125208		2332	chromatin remodeling complex subunit [Po	0.965	0.581	0.707	0.0
224071533		2327	chromatin remodeling complex subunit [Po	0.970	0.585	0.694	0.0
255565329		2257	chromodomain helicase DNA binding protei	0.916	0.570	0.681	0.0
356510796		2325	PREDICTED: uncharacterized protein LOC10	0.964	0.582	0.674	0.0
307136401		2374	chromatin remodeling complex subunit [Cu	0.973	0.575	0.655	0.0
449433493		2368	PREDICTED: uncharacterized protein LOC10	0.970	0.575	0.650	0.0
449490665		1851	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.970	0.736	0.650	0.0
357476459		1406	Chromodomain-helicase-DNA-binding protei	0.958	0.957	0.646	0.0
297791319		2251	hypothetical protein ARALYDRAFT_917093 [	0.940	0.586	0.600	0.0

>gi\|359472760\|ref\|XP_003631193.1\| PREDICTED: uncharacterized protein LOC100247555 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1951 bits (5053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 993/1393 (71%), Positives = 1141/1393 (81%), Gaps = 23/1393 (1%)

Query: 1    MKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEIN 60
            MK+N S TS MINRNWVLKRKRRKLPCGP LSNGKE   + SES  NT SAKRRLK E +
Sbjct: 1    MKENGSMTSKMINRNWVLKRKRRKLPCGPDLSNGKEGTSIASESTGNTSSAKRRLKGEAS 60

Query: 61   ADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
            +DRS+ KKKGNDGYY+ECVICDLGGNLLCCDSCPRTYHLQCL+PPLKRIPNGKWQCPKC 
Sbjct: 61   SDRSALKKKGNDGYYFECVICDLGGNLLCCDSCPRTYHLQCLNPPLKRIPNGKWQCPKCC 120

Query: 121  QKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSN-KGKS 179
            QK+D L+P+S+LDSISKRAR+KI++ KS+S +KSSG +KVS+IFG+SIL +KRS  K KS
Sbjct: 121  QKSDSLEPMSHLDSISKRARTKIVSAKSKSEIKSSGTEKVSRIFGSSILGKKRSAVKAKS 180

Query: 180  VLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLAD 239
             ++  V S+EK LDSSQ+DVS S KP + S G  +EGSSS    D+EK+ + +PT +  D
Sbjct: 181  AISRKVCSIEKKLDSSQIDVSSSPKPSHPSVGGSIEGSSSSVFVDNEKKPDLTPTGTPTD 240

Query: 240  -TKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERD-RKRKPE 297
             T    A+EVLP S+ T  E NDE    K + S  NG+SG K + A+ A+ R  RKRK +
Sbjct: 241  RTSNSAAKEVLPLSRDTALEPNDEASGRKPDLSCDNGTSGNKLIHAMDAATRKARKRKHK 300

Query: 298  VKDEDSQKKLRVDKRKRSASASKKRRSKIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVG 357
            V  +DSQKK R DK K +A+ SKK  SK  ++SP TS+ H K+RT +  VSA L + DVG
Sbjct: 301  VNSDDSQKKSRTDKGKHAANTSKKSGSKANSMSPETSRSHRKRRTADKGVSAGLSKEDVG 360

Query: 358  TKGLDAQRKDE-LAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDD 416
             K  D Q+K+E L  E T+P     +AG +++E   C++ V  ELQQVDRVLGCRV+GD+
Sbjct: 361  IKSSDVQKKNEKLPVEGTNPSHDVVEAGGNMDETVTCEENVTGELQQVDRVLGCRVQGDN 420

Query: 417  TSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSD 476
            T+SSCHIS T   D  SD+ L+ EN N+  EE L+ D DLD E  E L E    +    +
Sbjct: 421  TNSSCHISVTVPTDLPSDNVLIPENQNRSPEEILSGDVDLDGETAEKLHEGCQGMTNCFE 480

Query: 477  -EECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDES 535
             E+ +KND+ VD+I VYRRS TKEC+        NA++  R   K S   A++GK QD+S
Sbjct: 481  GEKNIKNDVRVDKINVYRRSATKECREG------NAMNTERRCAKSS--TAIDGKDQDQS 532

Query: 536  AVSTEDLGER-NDKMVVEDA-DVSLR---DNEGLTVSEIHITCESTDKDVDVGKKTSGSV 590
            AV+TE+L ++  +KMV+ED+ +V+LR   ++E   + E  ++ E+ D D D   K  G  
Sbjct: 533  AVTTENLRKQPTEKMVIEDSTNVTLRSHENDESPKICETPVSHENKDTDADTEMKMGGGA 592

Query: 591  AKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG 650
               VQ+  + ESA   G+ VSYEFLVKWVGKS+IHNSWI ESQLK+LAKRKLENYKAKYG
Sbjct: 593  ENTVQDATLAESASFDGEMVSYEFLVKWVGKSHIHNSWISESQLKLLAKRKLENYKAKYG 652

Query: 651  TTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTD 710
              VINIC+E+WKQPQRVI+LR+SKDGT EAFVKW GLPYDECTWE+LDEP +EK SHL D
Sbjct: 653  MAVINICEEQWKQPQRVIALRASKDGTTEAFVKWNGLPYDECTWERLDEPVVEKSSHLID 712

Query: 711  LFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKC 770
             + QFE++TL+KDA++D+LPRGKGD  QS+IV L EQP+ELKGG+LFPHQLEALNWLRKC
Sbjct: 713  AYNQFEKETLEKDAAKDDLPRGKGDGHQSDIVTLAEQPKELKGGSLFPHQLEALNWLRKC 772

Query: 771  WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
            WHKSKNVILADEMGLGKTVSACAF+SSLY EFKA LPCLVLVPLSTMPNWLAEF+LWAPN
Sbjct: 773  WHKSKNVILADEMGLGKTVSACAFLSSLYFEFKATLPCLVLVPLSTMPNWLAEFSLWAPN 832

Query: 831  LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPW 890
            LNVVEYHGCAKARAIIRQ+EWH +DP+  NKKT+SYKFNVLLTTYEM+LADSSHLRGVPW
Sbjct: 833  LNVVEYHGCAKARAIIRQHEWHGTDPNGSNKKTASYKFNVLLTTYEMVLADSSHLRGVPW 892

Query: 891  EVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSL 950
            EVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPA+FPSL
Sbjct: 893  EVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPATFPSL 952

Query: 951  SSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYR 1010
             SFEEKFNDLTT +KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYR
Sbjct: 953  FSFEEKFNDLTTAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYR 1012

Query: 1011 AMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKAS 1070
            AMLTKNYQ+LRN+GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS EFLHEMRIKAS
Sbjct: 1013 AMLTKNYQLLRNMGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSGEFLHEMRIKAS 1072

Query: 1071 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQA 1130
            AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL  EFGP+T+ERVDGSVSV DRQA
Sbjct: 1073 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLTTEFGPRTFERVDGSVSVADRQA 1132

Query: 1131 AITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
            AI RFNQDK+RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQS R
Sbjct: 1133 AIARFNQDKTRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNR 1192

Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGING 1250
            LLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDS  + G
Sbjct: 1193 LLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSSSVTG 1252

Query: 1251 KDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQ 1310
            KD GEN+ + ++ + D+E K +++ GGLGDVY+DKCT+GSTKIVWDENAI +LLDR+NLQ
Sbjct: 1253 KDAGENSCNKDDVIPDVEHKSKRKAGGLGDVYKDKCTDGSTKIVWDENAIMKLLDRTNLQ 1312

Query: 1311 SGSTDLAEGDLENDMLGSVKATEWNEETTEDQA--ESPVAAVDDASAENSERKEENAVTG 1368
            S S   AE DLENDMLGSVK+ EWN+E T++Q   E P    DD SA+NSERKE+N V G
Sbjct: 1313 SSSP--AEADLENDMLGSVKSLEWNDEPTDEQGGTELPPVVTDDVSAQNSERKEDNLV-G 1369

Query: 1369 IEENEWDRLLRVR 1381
             EENEWD+LLR+R
Sbjct: 1370 TEENEWDKLLRIR 1382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224125208\|ref\|XP_002329920.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222871157\|gb\|EEF08288.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224071533\|ref\|XP_002303505.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222840937\|gb\|EEE78484.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255565329\|ref\|XP_002523656.1\| chromodomain helicase DNA binding protein, putative [Ricinus communis] gi\|223537108\|gb\|EEF38742.1\| chromodomain helicase DNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356510796\|ref\|XP_003524120.1\| PREDICTED: uncharacterized protein LOC100793933 [Glycine max]	Back alignment and taxonomy information

>gi\|307136401\|gb\|ADN34210.1\| chromatin remodeling complex subunit [Cucumis melo subsp. melo]	Back alignment and taxonomy information

>gi\|449433493\|ref\|XP_004134532.1\| PREDICTED: uncharacterized protein LOC101204186 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449490665\|ref\|XP_004158671.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228553, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357476459\|ref\|XP_003608515.1\| Chromodomain-helicase-DNA-binding protein, partial [Medicago truncatula] gi\|355509570\|gb\|AES90712.1\| Chromodomain-helicase-DNA-binding protein, partial [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297791319\|ref\|XP_002863544.1\| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp. lyrata] gi\|297309379\|gb\|EFH39803.1\| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1404
UNIPROTKB\|F1RIM3		1723	CHD5 "Uncharacterized protein"	0.415	0.338	0.470	2.6e-158
UNIPROTKB\|F1SSZ2		1667	CHD5 "Uncharacterized protein"	0.357	0.301	0.508	1.3e-156
UNIPROTKB\|E2R1M3		1812	CHD5 "Uncharacterized protein"	0.415	0.322	0.470	1.7e-156
RGD\|1582725		1940	Chd5 "chromodomain helicase DN	0.415	0.301	0.473	2.9e-156
RGD\|1311923		1925	Chd3 "chromodomain helicase DN	0.366	0.267	0.489	9.9e-156
UNIPROTKB\|F1MFF9		1852	Bt.62145 "Uncharacterized prot	0.357	0.271	0.508	1e-155
UNIPROTKB\|Q8TDI0		1954	CHD5 "Chromodomain-helicase-DN	0.415	0.298	0.470	4.8e-155
UNIPROTKB\|F1LPP7		2020	Chd3 "Protein Chd3" [Rattus no	0.366	0.254	0.489	5.2e-155
UNIPROTKB\|F1M7Q0		2054	Chd3 "Protein Chd3" [Rattus no	0.366	0.250	0.489	8.5e-155
FB\|FBgn0262519		1982	Mi-2 [Drosophila melanogaster	0.353	0.250	0.487	1.5e-154

UNIPROTKB\|F1RIM3 CHD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

 Score = 1266 (450.7 bits), Expect = 2.6e-158, Sum P(4) = 2.6e-158
 Identities = 293/623 (47%), Positives = 393/623 (63%)

Query:   753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
             GG L P+QLE LNWLR  W +  + ILADEMGLGKTV    F+ SLY E  +K P LV  
Sbjct:   629 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 688

Query:   813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
             PLST+ NW  EF +WAP+  VV Y G  ++R++IR+ E+   D    +       KK   
Sbjct:   689 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 748

Query:   866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
              KF+VLLT+YE+I  D + L  + W  LVVDE HR                  +++LLTG
Sbjct:   749 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 808

Query:   926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
             TPLQNN+ E+++LLNFL P  F +L  F E+F D++   ++++L  L+ PHMLRRLK D 
Sbjct:   809 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 868

Query:   986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
              +N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G  Q S+LNI+M L+K CNH
Sbjct:   869 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 927

Query:  1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
             PYL P    E P   +  +     +K+S KL LL  MLK L  EGHRVLIFSQMTK+LD+
Sbjct:   928 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 987

Query:  1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
             LED+L  E G K YER+DG ++ G RQ AI RFN   ++ F FLLSTR+ GLGINLATAD
Sbjct:   988 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1045

Query:  1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
             TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML  L V
Sbjct:  1046 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1105

Query:  1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGK-DMGENN-TSIEEAVRD----LE 1268
                  +KSGS  ++E++DIL++GTEELF D   + G    G+   T I +        L 
Sbjct:  1106 RPGLGSKSGSMTKQELDDILKFGTEELFKDD--VEGMMSQGQRPATPIPDVQSSKGGALA 1163

Query:  1269 QKHRKRGGGL--GDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
                +K+ G    GD   +K  E S+ I +D+ AI++LLDR+   +  T+L      N+ L
Sbjct:  1164 ASAKKKHGSTPPGD---NKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYL 1217

Query:  1327 GSVKATEW--NEETTEDQAESPV 1347
              S K  ++   EE   ++ E  +
Sbjct:  1218 SSFKVAQYVVREEDGVEEVEREI 1240

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB\|F1SSZ2 CHD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R1M3 CHD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1582725 Chd5 "chromodomain helicase DNA binding protein 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1311923 Chd3 "chromodomain helicase DNA binding protein 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MFF9 Bt.62145 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TDI0 CHD5 "Chromodomain-helicase-DNA-binding protein 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LPP7 Chd3 "Protein Chd3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M7Q0 Chd3 "Protein Chd3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

FB\|FBgn0262519 Mi-2 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1404
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	1e-132
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-93
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	1e-89
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	1e-27
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	3e-24
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-22
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	6e-20
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	1e-19
pfam00628		51	pfam00628, PHD, PHD-finger	7e-15
smart00249		47	smart00249, PHD, PHD zinc finger	6e-13
pfam11496		279	pfam11496, HDA2-3, Class II histone deacetylase co	1e-08
pfam00385		52	pfam00385, Chromo, Chromo (CHRromatin Organisation	5e-08
cd00024		55	cd00024, CHROMO, Chromatin organization modifier (	1e-07
smart00298		55	smart00298, CHROMO, Chromatin organization modifie	1e-07
smart00298		55	smart00298, CHROMO, Chromatin organization modifie	2e-07
cd11726		127	cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha	2e-07
COG1061		442	COG1061, SSL2, DNA or RNA helicases of superfamily	3e-07
cd00024		55	cd00024, CHROMO, Chromatin organization modifier (	2e-06
cd04718		148	cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol	6e-06
cd11672		120	cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD	1e-04
cd11725		126	cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-	4e-04
COG1205		851	COG1205, COG1205, Distinct helicase family with a	6e-04
pfam00385		52	pfam00385, Chromo, Chromo (CHRromatin Organisation	8e-04
PRK04914		956	PRK04914, PRK04914, ATP-dependent helicase HepA; V	0.002
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	0.003

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

 Score =  434 bits (1119), Expect = e-132
 Identities = 223/547 (40%), Positives = 325/547 (59%), Gaps = 38/547 (6%)

Query: 742  VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE 801
              L  QP  +KG  +  +QL  LNWL + +    N ILADEMGLGKT+   + +  L+ E
Sbjct: 157  TRLLVQPSCIKG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLH-E 214

Query: 802  FKAKL-PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN 860
            ++    P +V+ P ST+ NW+ E   + P L  V++HG  + RA  R+    A       
Sbjct: 215  YRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAG------ 268

Query: 861  KKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHR 920
                  KF+V +T++EM + + + L+   W  +++DE HR+KN  S L   +  FS  +R
Sbjct: 269  ------KFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYR 322

Query: 921  VLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF-----NDLTTTQKVEELKKLVAP 975
            +L+TGTPLQNN+ E++ LLNFL P  F S  +F+E F     ND    + V++L K++ P
Sbjct: 323  LLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEND--QQEVVQQLHKVLRP 380

Query: 976  HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
             +LRRLK D  + +PPK E ++ V +S +Q +YY+A+L K+  +   +  G  ++ +LNI
Sbjct: 381  FLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDV---VNAGGERKRLLNI 437

Query: 1036 VMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQ 1095
             MQLRK CNHPYL  G EP  G      E  ++ S K+ LL  +L  L +   RVLIFSQ
Sbjct: 438  AMQLRKCCNHPYLFQGAEP--GPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQ 495

Query: 1096 MTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLG 1154
            MT+LLDILEDYL   +    Y R+DG+    DR A+I  FN+  S +FVFLLSTR+ GLG
Sbjct: 496  MTRLLDILEDYL--MYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553

Query: 1155 INLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKL 1214
            INLATAD VI+YDSD+NP  D+QA +RAHRIGQ K + V+R     ++EE++++ A KKL
Sbjct: 554  INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613

Query: 1215 MLDQLFV-------NKSGSQKEVEDILRWGTEELFN-DSPGINGKDMGENNTSIEEAVRD 1266
             LD L +        K+ ++ E+  ++R+G E +F+     I  +D+       EEA  +
Sbjct: 614  ALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAE 673

Query: 1267 LEQKHRK 1273
            L+ K +K
Sbjct: 674  LDAKMKK 680

Length = 1033

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|201356 pfam00628, PHD, PHD-finger	Back alignment and domain information

>gnl\|CDD\|214584 smart00249, PHD, PHD zinc finger	Back alignment and domain information

>gnl\|CDD\|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3	Back alignment and domain information

>gnl\|CDD\|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain	Back alignment and domain information

>gnl\|CDD\|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>gnl\|CDD\|214605 smart00298, CHROMO, Chromatin organization modifier domain	Back alignment and domain information

>gnl\|CDD\|214605 smart00298, CHROMO, Chromatin organization modifier domain	Back alignment and domain information

>gnl\|CDD\|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked)	Back alignment and domain information

>gnl\|CDD\|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>gnl\|CDD\|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>gnl\|CDD\|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain	Back alignment and domain information

>gnl\|CDD\|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 (Dnmt3)	Back alignment and domain information

>gnl\|CDD\|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain	Back alignment and domain information

>gnl\|CDD\|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1404
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.96
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.96
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.95
PHA02558		501	uvsW UvsW helicase; Provisional	99.95
PTZ00110		545	helicase; Provisional	99.92
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.92
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.92
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.91
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.91
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.91
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.91
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.91
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.91
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.91
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.91
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.91
PRK10689		1147	transcription-repair coupling factor; Provisional	99.9
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.9
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.9
KOG0354		746	consensus DEAD-box like helicase [General function	99.9
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.9
PTZ00424		401	helicase 45; Provisional	99.89
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.89
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.88
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.87
KOG1123		776	consensus RNA polymerase II transcription initiati	99.87
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.86
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.86
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.85
PRK13767		876	ATP-dependent helicase; Provisional	99.85
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.84
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.83
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.8
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.8
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.79
PRK02362		737	ski2-like helicase; Provisional	99.79
PRK01172		674	ski2-like helicase; Provisional	99.78
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.78
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.77
PRK00254		720	ski2-like helicase; Provisional	99.75
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.74
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.73
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.72
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.72
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.72
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.71
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.71
PHA02653		675	RNA helicase NPH-II; Provisional	99.71
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.7
PRK05580		679	primosome assembly protein PriA; Validated	99.7
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.7
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.7
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.69
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.69
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.68
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.67
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.67
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.67
KOG4284		980	consensus DEAD box protein [Transcription]	99.66
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.66
COG1205		851	Distinct helicase family with a unique C-terminal	99.65
PRK09401		1176	reverse gyrase; Reviewed	99.64
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.64
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.63
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.61
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.61
COG1204		766	Superfamily II helicase [General function predicti	99.59
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.59
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.59
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.58
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.57
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.57
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.57
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.56
COG4096		875	HsdR Type I site-specific restriction-modification	99.53
PRK14701		1638	reverse gyrase; Provisional	99.51
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.51
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.51
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.5
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.49
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.49
PRK09694		878	helicase Cas3; Provisional	99.48
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.47
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.47
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.46
COG1202		830	Superfamily II helicase, archaea-specific [General	99.45
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.44
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.44
COG4889		1518	Predicted helicase [General function prediction on	99.42
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.42
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.38
KOG0327		397	consensus Translation initiation factor 4F, helica	99.38
PRK05298		652	excinuclease ABC subunit B; Provisional	99.36
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.31
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.31
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.31
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.29
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.27
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	99.26
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.25
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.24
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.23
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.2
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.18
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.17
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.17
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.11
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.06
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.04
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.04
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.03
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.02
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.02
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.01
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.94
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.8
KOG0957		707	consensus PHD finger protein [General function pre	98.79
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.79
COG5034		271	TNG2 Chromatin remodeling protein, contains PhD zi	98.78
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.78
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.74
KOG1244		336	consensus Predicted transcription factor Requiem/N	98.74
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	98.67
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	98.65
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.63
COG0610		962	Type I site-specific restriction-modification syst	98.58
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	98.58
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	98.57
KOG4299		613	consensus PHD Zn-finger protein [General function	98.55
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.49
KOG1973		274	consensus Chromatin remodeling protein, contains P	98.45
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.45
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.42
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.41
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.41
KOG0825		1134	consensus PHD Zn-finger protein [General function	98.37
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	98.32
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	98.3
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	98.27
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	98.21
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	98.17
PRK15483		986	type III restriction-modification system StyLTI en	98.15
PRK14873		665	primosome assembly protein PriA; Provisional	98.15
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	98.14
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	98.06
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.03
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	98.03
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	98.02
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	98.02
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.02
KOG1512		381	consensus PHD Zn-finger protein [General function	98.0
PF00385		55	Chromo: Chromo (CHRromatin Organisation MOdifier)	97.99
PF13871		278	Helicase_C_4: Helicase_C-like	97.93
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.89
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.81
PF06465		66	DUF1087: Domain of Unknown Function (DUF1087); Int	97.81
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.78
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.78
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.74
KOG0383		696	consensus Predicted helicase [General function pre	97.72
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	97.71
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.68
PF00385		55	Chromo: Chromo (CHRromatin Organisation MOdifier)	97.58
KOG1245		1404	consensus Chromatin remodeling complex WSTF-ISWI,	97.51
cd00024		55	CHROMO Chromatin organization modifier (chromo) do	97.46
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.46
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	97.44
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.36
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	97.36
cd00024		55	CHROMO Chromatin organization modifier (chromo) do	97.33
smart00298		55	CHROMO Chromatin organization modifier domain.	97.1
smart00298		55	CHROMO Chromatin organization modifier domain.	97.08
KOG4323		464	consensus Polycomb-like PHD Zn-finger protein [Gen	97.02
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	96.98
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	96.91
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	96.82
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.81
KOG0955		1051	consensus PHD finger protein BR140/LIN-49 [General	96.74
COG3587		985	Restriction endonuclease [Defense mechanisms]	96.54
PRK10536		262	hypothetical protein; Provisional	96.53
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	96.42
KOG0954		893	consensus PHD finger protein [General function pre	96.29
COG5141		669	PHD zinc finger-containing protein [General functi	96.19
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.0
KOG0956		900	consensus PHD finger protein AF10 [General functio	96.0
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	95.74
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	95.64
KOG2748		369	consensus Uncharacterized conserved protein, conta	95.58
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.51
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	95.41
TIGR00376		637	DNA helicase, putative. The gene product may repre	95.24
PF13831		36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	94.82
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	94.75
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	94.72
KOG4299		613	consensus PHD Zn-finger protein [General function	94.59
KOG1803		649	consensus DNA helicase [Replication, recombination	94.55
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	93.93
PRK04296		190	thymidine kinase; Provisional	93.81
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	93.47
PLN03025		319	replication factor C subunit; Provisional	93.3
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	93.2
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	93.2
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	92.8
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	92.78
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	92.66
KOG2748		369	consensus Uncharacterized conserved protein, conta	92.66
PRK10875		615	recD exonuclease V subunit alpha; Provisional	92.58
PRK09112		351	DNA polymerase III subunit delta'; Validated	92.49
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	92.3
smart00382		148	AAA ATPases associated with a variety of cellular	92.23
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	92.19
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	91.78
PRK05707		328	DNA polymerase III subunit delta'; Validated	91.41
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	91.28
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	91.09
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	91.08
KOG1911		270	consensus Heterochromatin-associated protein HP1 a	90.94
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	90.93
PRK12402		337	replication factor C small subunit 2; Reviewed	90.71
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	90.7
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	90.24
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	89.8
PRK06526		254	transposase; Provisional	89.73
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	89.59
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	89.3
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	89.28
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	89.21
TIGR00595		505	priA primosomal protein N'. All proteins in this f	89.16
PRK07940		394	DNA polymerase III subunit delta'; Validated	89.11
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	89.06
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	88.99
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	88.77
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	88.74
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	88.52
PRK06871		325	DNA polymerase III subunit delta'; Validated	88.45
PRK07993		334	DNA polymerase III subunit delta'; Validated	88.34
KOG0957		707	consensus PHD finger protein [General function pre	88.3
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	88.22
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	88.12
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	88.08
CHL00181		287	cbbX CbbX; Provisional	88.05
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	88.01
PRK08181		269	transposase; Validated	87.98
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	87.77
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	87.68
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	87.56
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	87.5
PRK05580		679	primosome assembly protein PriA; Validated	87.48
PRK08058		329	DNA polymerase III subunit delta'; Validated	87.36
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	87.18
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	87.16
PRK14873		665	primosome assembly protein PriA; Provisional	87.13
KOG1246		904	consensus DNA-binding protein jumonji/RBP2/SMCY, c	86.84
PRK07471		365	DNA polymerase III subunit delta'; Validated	86.46
PRK08769		319	DNA polymerase III subunit delta'; Validated	86.39
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	86.38
PRK08116		268	hypothetical protein; Validated	86.21
PRK08084		235	DNA replication initiation factor; Provisional	86.08
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	86.05
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	85.88
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	85.7
PHA02544		316	44 clamp loader, small subunit; Provisional	85.63
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	85.62
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	85.32
COG1198		730	PriA Primosomal protein N' (replication factor Y)	85.28
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	85.25
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	85.18
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	84.55
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	84.09
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	84.08
PRK00440		319	rfc replication factor C small subunit; Reviewed	84.05
PRK06964		342	DNA polymerase III subunit delta'; Validated	83.85
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	83.85
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	83.83
PF13173		128	AAA_14: AAA domain	83.62
PF13245		76	AAA_19: Part of AAA domain	83.58
PHA03333		752	putative ATPase subunit of terminase; Provisional	83.45
PRK04195		482	replication factor C large subunit; Provisional	83.12
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	82.92
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	82.82
PRK14974		336	cell division protein FtsY; Provisional	82.61
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	82.17
PHA02533		534	17 large terminase protein; Provisional	82.14
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	82.1
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	81.85
PRK06835		329	DNA replication protein DnaC; Validated	81.79
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	81.73
KOG3612		588	consensus PHD Zn-finger protein [General function	81.69
PRK13889		988	conjugal transfer relaxase TraA; Provisional	81.45
KOG1805		1100	consensus DNA replication helicase [Replication, r	81.12
PRK06090		319	DNA polymerase III subunit delta'; Validated	81.09
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	80.95
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	80.86
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	80.68
PRK06921		266	hypothetical protein; Provisional	80.48
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	80.17
PF15446		175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	80.09

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.1e-144  Score=1331.85  Aligned_cols=619  Identities=47%  Similarity=0.757  Sum_probs=559.4

Q ss_pred             ceeEEEEEEecCccccccccCCHHHHH---HHHHHHHHHHHHhhCc-------ccccchhhhccchhhhhhhccCCCCcc
Q 042857          609 AVSYEFLVKWVGKSNIHNSWIPESQLK---VLAKRKLENYKAKYGT-------TVINICDERWKQPQRVISLRSSKDGTR  678 (1404)
Q Consensus       609 ~~~~eylVKw~~~Sy~h~~Wv~e~~l~---~~~~~~l~~~~~k~~~-------~~~~~~~~e~~~~eRii~~r~~~~~~~  678 (1404)
                      ....+|||||+|+||+||+|.++++|.   ..+-+++.||+++...       .....+.++|.+|+|||++....+  .
T Consensus       223 ~e~~qFlIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d--~  300 (1373)
T KOG0384|consen  223 EEEEQFLIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD--P  300 (1373)
T ss_pred             chhhhhheeeccccceeccccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC--c
Confidence            556899999999999999999999976   3466789999887422       122345678999999999988766  8


Q ss_pred             eeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcchhhhhhccCCccCCCCCCCH
Q 042857          679 EAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFP  758 (1404)
Q Consensus       679 eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~qP~~l~g~~L~p  758 (1404)
                      +|||||+||||++||||.... +....+..++.|...+....      .+..........+.|.++..||.++.|.+||+
T Consensus       301 eYLvKW~~LpY~e~TWE~~~~-I~~~~~~~~~~~~~Re~sk~------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRd  373 (1373)
T KOG0384|consen  301 EYLVKWRGLPYEECTWEDAED-IAKKAQEEIEEFQSRENSKT------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRD  373 (1373)
T ss_pred             eeEEEecCCCcccccccchhh-hhhhHHHHHHHHhhhhcccc------CCCCccccCccchhHHHhhcCccccccchhhh
Confidence            999999999999999996432 23445666777766543221      11111112234567889999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEEEec
Q 042857          759 HQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHG  838 (1404)
Q Consensus       759 yQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvvy~G  838 (1404)
                      ||++|||||+++|+++.+||||||||||||+|+|+||.+|+..+...||||||||+|++.+|++||..|+ ++++++|+|
T Consensus       374 yQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g  452 (1373)
T KOG0384|consen  374 YQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHG  452 (1373)
T ss_pred             hhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             chhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHhhcccc
Q 042857          839 CAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQ  918 (1404)
Q Consensus       839 ~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~  918 (1404)
                      +..+|++|++|||+....      ....+|+++||||+++.+|..+|..++|.+++|||||||||..++++..|..+...
T Consensus       453 ~~~sr~~i~~ye~~~~~~------~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~  526 (1373)
T KOG0384|consen  453 NLESRQLIRQYEFYHSSN------TKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMN  526 (1373)
T ss_pred             chhHHHHHHHHHheecCC------ccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhccc
Confidence            999999999999987642      34579999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEE
Q 042857          919 HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVP  998 (1404)
Q Consensus       919 ~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~  998 (1404)
                      ||||+||||+||++.|||+|||||+|+.|.+..+|...| +......+..||.+|+||||||+|+||.+.||++.|.|+.
T Consensus       527 ~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~Ilr  605 (1373)
T KOG0384|consen  527 HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILR  605 (1373)
T ss_pred             ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEE
Confidence            999999999999999999999999999999999999999 7777889999999999999999999999999999999999


Q ss_pred             ecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC------cHHHHHHHHHhhhhH
Q 042857          999 VELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSG------SVEFLHEMRIKASAK 1072 (1404)
Q Consensus       999 V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~------~~e~l~~~~i~~SgK 1072 (1404)
                      |+||++|++||++||++|+.+|....++.. .+|+|++|.||||||||||+.+++....      ..+.....+|.+|||
T Consensus       606 Vels~lQk~yYk~ILtkN~~~LtKG~~g~~-~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGK  684 (1373)
T KOG0384|consen  606 VELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGK  684 (1373)
T ss_pred             eehhHHHHHHHHHHHHhhHHHHhccCCCCC-chHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCc
Confidence            999999999999999999999988766655 8999999999999999999998774321      123456678999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCC-ceEEEeecccc
Q 042857         1073 LTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSC 1151 (1404)
Q Consensus      1073 l~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s-~~VfLLSTrAg 1151 (1404)
                      |.+|++||.+|++.||||||||||++|||||++||..+  +|.|.||||++.++.||++||+||++++ .||||||||||
T Consensus       685 lVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAG  762 (1373)
T KOG0384|consen  685 LVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAG  762 (1373)
T ss_pred             EEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccC
Confidence            99999999999999999999999999999999999977  8999999999999999999999999887 79999999999


Q ss_pred             cccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcCCC------
Q 042857         1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG------ 1225 (1404)
Q Consensus      1152 G~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~~~------ 1225 (1404)
                      |+||||++||||||||+||||++|+||++|||||||++.|.||||||++||||.|+++|++||.|+++|++.+.      
T Consensus       763 GLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s  842 (1373)
T KOG0384|consen  763 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTS  842 (1373)
T ss_pred             cccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997432      


Q ss_pred             -----ChHHHHHHHHhhHHHHhcCCCC
Q 042857         1226 -----SQKEVEDILRWGTEELFNDSPG 1247 (1404)
Q Consensus      1226 -----s~~eledilk~Ga~~Lf~~~~~ 1247 (1404)
                           ++.++++||+|||++||.+.+.
T Consensus       843 ~~~~f~K~ELsaILKfGA~~lfke~en  869 (1373)
T KOG0384|consen  843 KSNPFSKEELSAILKFGAYELFKEEEN  869 (1373)
T ss_pred             CCCCCCHHHHHHHHHhchHHhhhcccc
Confidence                 5799999999999999987654

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation	Back alignment and domain information

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]	Back alignment and domain information

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>smart00298 CHROMO Chromatin organization modifier domain	Back alignment and domain information

>smart00298 CHROMO Chromatin organization modifier domain	Back alignment and domain information

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0954 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>COG5141 PHD zinc finger-containing protein [General function prediction only]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK06090 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1404
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		1e-128
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		1e-51
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		3e-49
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		3e-43
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		6e-20
1mm2_A		61	Solution Structure Of The 2nd Phd Domain From Mi2b		1e-15
1mm3_A		61	Solution Structure Of The 2nd Phd Domain From Mi2b		2e-14
2kft_A		56	Nmr Solution Structure Of The First Phd Finger Doma		2e-13
1xwh_A		66	Nmr Structure Of The First Phd Finger Of Autoimmune		3e-13
2yql_A		56	Solution Structure Of The Phd Domain In Phd Finger		1e-12
2puy_A		60	Crystal Structure Of The Bhc80 Phd Finger Length =		5e-12
2l5u_A		61	Structure Of The First Phd Finger (Phd1) From Chd4		1e-11
2b2t_A		187	Tandem Chromodomains Of Human Chd1 Complexed With H		4e-08
2b2u_A		187	Tandem Chromodomains Of Human Chd1 Complexed With H		5e-08
2e6r_A		92	Solution Structure Of The Phd Domain In Smcy Protei		6e-08
3u5m_A		207	Crystal Structure Of Trim33 Phd-Bromo In The Free S		2e-07
3o33_A		184	Crystal Structure Of Trim24 Phd-Bromo In The Free S		3e-07
3v43_A		112	Crystal Structure Of Moz Length = 112		6e-07
2ln0_A		110	Structure Of Moz Length = 110		7e-07
1f62_A		51	Wstf-Phd Length = 51		2e-06
2h1e_A		177	Tandem Chromodomains Of Budding Yeast Chd1 Length =		4e-06
4gnd_A		107	Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains		6e-05
3zvz_B		57	Phd Finger Of Human Uhrf1 Length = 57		1e-04
3shb_A		77	Crystal Structure Of Phd Domain Of Uhrf1 Length = 7		2e-04
3t6r_A		72	Structure Of Uhrf1 In Complex With Unmodified H3 N-		2e-04
3sou_A		70	Structure Of Uhrf1 Phd Finger In Complex With Histo		2e-04
2lgg_A		69	Structure Of Phd Domain Of Uhrf1 In Complex With H3		2e-04
2ysm_A		111	Solution Structure Of The First And Second Phd Doma		3e-04
3dmq_A		968	Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT		6e-04
2kwj_A		114	Solution Structures Of The Double Phd Fingers Of Hu		7e-04

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800