Citrus Sinensis ID: 042860

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKGSGIPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVLASQLLVLLFSTVFLMM
cHHHHHHHHHHHHccccEEEEEccccccccccEEEccEEEEEEccccccEEEEEcHHHHccccccccEEEcccccccEEEEccccccEEEEEccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHccccccEEEEEcccccccccEEEEccEEEEEEcccccEEEEEEccHHHHcccccccEEEccccccEEEEccccccEEEEEEcccccHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
MLPIFLVLFLLSQQAQSATIFVDGisewknpsvhvgdtiifkhkfnnsnlyifknknafnlcnfsqatlltnpnstsytwhpsrpgffyftfnngslqtcnkssQKLSIKVsavsstpsptpstekppmmaaptpapggivssspsypwpfrphekafsptpapmiaatspgtvpdkgsgipfinsnpavplptgevdsatirplptsghvnqVEVGVLASQLLVLLFSTVFLMM
MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSavsstpsptpstekppmMAAPTPAPGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKGSGIPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVLASQLLVLLFSTVFLMM
MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVsstpsptpstEKppmmaaptpapGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKGSGIPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVLASQLLVLLFSTVFLMM
**PIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQT***********************************************************************************************************TSGHVNQVEVGVLASQLLVLLFSTVFL**
MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNG*********************************************************************************************************************QVEVGVLASQLLVLLFSTVFLMM
MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTC*****************************MAAPTPAPGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKGSGIPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVLASQLLVLLFSTVFLMM
MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVS********************************P*******************************GIPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVLASQLLVLLFSTVFLMM
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKGSGIPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVLASQLLVLLFSTVFLMM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
225460658238 PREDICTED: uncharacterized protein LOC10 0.974 0.962 0.599 2e-66
296081184233 unnamed protein product [Vitis vinifera] 0.974 0.982 0.599 3e-66
224062880206 predicted protein [Populus trichocarpa] 0.846 0.966 0.650 3e-65
357443621237 hypothetical protein MTR_1g098580 [Medic 0.957 0.949 0.570 7e-63
388521757242 unknown [Lotus japonicus] 0.914 0.888 0.607 4e-62
356574545229 PREDICTED: uncharacterized protein LOC10 0.876 0.899 0.585 1e-61
356535780225 PREDICTED: uncharacterized protein LOC10 0.851 0.888 0.595 2e-61
255566610223 conserved hypothetical protein [Ricinus 0.863 0.910 0.569 9e-61
224085119254 predicted protein [Populus trichocarpa] 0.859 0.795 0.612 1e-60
388499036237 unknown [Medicago truncatula] 0.936 0.928 0.564 3e-60
>gi|225460658|ref|XP_002265483.1| PREDICTED: uncharacterized protein LOC100257188 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 173/237 (72%), Gaps = 8/237 (3%)

Query: 1   MLPIFLVLFL--LSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNA 58
           ML +F   FL  L Q + S T+ VDG+SEWKNP VHVGD+IIF+H+ N+ NLY+F+N+ A
Sbjct: 6   MLVVFFTSFLTLLFQLSLSTTVVVDGVSEWKNPIVHVGDSIIFRHR-NHYNLYVFQNREA 64

Query: 59  FNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTP 118
           FNLCNF+QATLLT PNSTSYTWHPSR GFFYF+FNNGSL+ C ++ QKL+IKV A +   
Sbjct: 65  FNLCNFTQATLLTKPNSTSYTWHPSRTGFFYFSFNNGSLEACQQA-QKLAIKVQASAKPR 123

Query: 119 SPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKG 178
               ++   P  AAP P  GG  +SSP YPWPFRPHE A  P+ A   A+     +PDKG
Sbjct: 124 DNWATSPALPPRAAPAPTSGGTPTSSPVYPWPFRPHEAA--PSSAEPSASPPATVMPDKG 181

Query: 179 SGIPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVL--ASQLLVLLFSTVFL 233
           +GIPFINSNPAVPLPTGEVDSATIRP+PTSGH   V+V V+  A+Q+ V+    V L
Sbjct: 182 AGIPFINSNPAVPLPTGEVDSATIRPVPTSGHGGLVQVKVVQFAAQMSVVCVVLVML 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296081184|emb|CBI18210.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224062880|ref|XP_002300916.1| predicted protein [Populus trichocarpa] gi|222842642|gb|EEE80189.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357443621|ref|XP_003592088.1| hypothetical protein MTR_1g098580 [Medicago truncatula] gi|355481136|gb|AES62339.1| hypothetical protein MTR_1g098580 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388521757|gb|AFK48940.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356574545|ref|XP_003555406.1| PREDICTED: uncharacterized protein LOC100800621 [Glycine max] Back     alignment and taxonomy information
>gi|356535780|ref|XP_003536421.1| PREDICTED: uncharacterized protein LOC100808387 [Glycine max] Back     alignment and taxonomy information
>gi|255566610|ref|XP_002524289.1| conserved hypothetical protein [Ricinus communis] gi|223536380|gb|EEF38029.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224085119|ref|XP_002307499.1| predicted protein [Populus trichocarpa] gi|222856948|gb|EEE94495.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388499036|gb|AFK37584.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
TAIR|locus:2199617242 AT1G21090 [Arabidopsis thalian 0.940 0.913 0.5 1.2e-51
TAIR|locus:2199617 AT1G21090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 118/236 (50%), Positives = 157/236 (66%)

Query:     5 FLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNF 64
             F  L L S+ + SAT  VDG+S WK+P+VH GD++IF+HK+   +LYIF+NK+AFN+CNF
Sbjct:    17 FCFLSLFSRPSLSATFLVDGVSVWKSPTVHTGDSVIFRHKYGY-DLYIFRNKDAFNVCNF 75

Query:    65 SQATLLTNPNSTSYTWHPSRPGFFYFTF-NNGSL-QTCNKSSQKLSIKVSAVXXXXXXXX 122
             +QATLLT PNSTS+TW+PSR G +YF+F NN SL +TC + +QKL+++V           
Sbjct:    76 TQATLLTKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTC-QLNQKLTVQV-----ILAAAS 129

Query:   123 XXEKXXXXXXXXXXXGGIVSSSPSYPWPFRPHE-KAFSPTPAPMIAATSPGTVPDKGSGI 181
                +           GG++SS  SYPWP  P E  AFSP P+P    TS  TVP K  G+
Sbjct:   130 PPSQPPATAPVPVSEGGVISSPSSYPWPLGPREGSAFSPGPSPS-EITSV-TVPGK-DGV 186

Query:   182 PFINSNPAVPLPTGEVDSATIRPLPTSGH-VNQVEVGVLASQL-LVLLFSTVFLMM 235
             PFINSNPAVPLPTG+VDS +I PLPTS +  +QV +  L  +L L  +   +FL++
Sbjct:   187 PFINSNPAVPLPTGDVDSTSINPLPTSTNSAHQVMMMTLTVKLGLCCVAMFLFLVL 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       214   0.00085  112 3  11 22  0.38    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  171 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.00u 0.09s 20.09t   Elapsed:  00:00:01
  Total cpu time:  20.00u 0.09s 20.09t   Elapsed:  00:00:01
  Start:  Sat May 11 05:21:54 2013   End:  Sat May 11 05:21:55 2013
GO:0005886 "plasma membrane" evidence=ISM
GO:0031225 "anchored to membrane" evidence=TAS

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.001
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.004
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information 
 Score = 39.3 bits (92), Expect = 0.001
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 111 VSAVSSTPSPTPSTEKPPMMAAPTPAPGGIVSSSPS-YPWPFRPHEKAFSPTPAPMIAAT 169
            +A +  P+  P+       A P  AP   V++  +  P        A         A  
Sbjct: 396 QAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455

Query: 170 SPGTVPDKGSGIPFINSNPAVPLPTGEVDSATIRPLPT----SGHVNQ 213
           +P TV       P      A P P     +A + P          V Q
Sbjct: 456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQ 503

Length = 618
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.87
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.33
PRK02710119 plastocyanin; Provisional 98.33
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 98.32
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.31
COG3794128 PetE Plastocyanin [Energy production and conversio 98.24
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 98.1
TIGR0265783 amicyanin amicyanin. Members of this family are am 97.4
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 97.4
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 97.0
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 96.65
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 95.89
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 95.81
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 94.42
TIGR02695125 azurin azurin. Azurin is a blue copper-binding pro 93.55
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 93.51
COG4454158 Uncharacterized copper-binding protein [Inorganic 92.59
TIGR02376311 Cu_nitrite_red nitrite reductase, copper-containin 91.78
PRK02888635 nitrous-oxide reductase; Validated 90.72
PF00116120 COX2: Cytochrome C oxidase subunit II, periplasmic 89.04
PLN02604 566 oxidoreductase 85.0
TIGR02866201 CoxB cytochrome c oxidase, subunit II. Cytochrome 84.67
COG1622247 CyoA Heme/copper-type cytochrome/quinol oxidases, 84.26
PF07732117 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01 82.5
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.3e-33  Score=234.95  Aligned_cols=96  Identities=20%  Similarity=0.350  Sum_probs=86.2

Q ss_pred             HhhhcccceEEEecCCCCCCC----------CceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcce
Q 042860           10 LLSQQAQSATIFVDGISEWKN----------PSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSY   78 (235)
Q Consensus        10 ll~~~a~A~~~~VGg~~GW~~----------ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~   78 (235)
                      ++...+.+++|+|||+.||+.          ++|+|||+|+|+|+++.|||+|| +|++|++|+.++++ .+++|++   
T Consensus        13 ~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V-~~~~Y~~C~~~~pi~~~tsG~d---   88 (167)
T PLN03148         13 FSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEV-NQTGYDNCTTEGAAGNWTSGKD---   88 (167)
T ss_pred             HhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEE-ChHHcCcccCCCCcceecCCCc---
Confidence            445577899999999999963          59999999999999999999998 99999999999988 4888876   


Q ss_pred             EEEcCCceeEEEEEcCCCCCccccCCceeEEEEec
Q 042860           79 TWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSA  113 (235)
Q Consensus        79 ~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~  113 (235)
                      .|+|+++|+|||||  | .+|| ++||||.|+|.+
T Consensus        89 ~v~L~~~G~~YFIc--g-~ghC-~~GmKl~I~V~~  119 (167)
T PLN03148         89 FIPLNKAKRYYFIC--G-NGQC-FNGMKVTILVHP  119 (167)
T ss_pred             EEEecCCccEEEEc--C-CCcc-ccCCEEEEEEcC
Confidence            68999999999999  4 4899 999999999964

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>TIGR02695 azurin azurin Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information
>TIGR02866 CoxB cytochrome c oxidase, subunit II Back     alignment and domain information
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] Back     alignment and domain information
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
1jer_A138 Cucumber stellacyanin; electron transport, copper, 2e-12
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 1e-08
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 2e-07
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 1e-04
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 21/144 (14%)

Query: 17  SATIF-VDGISEWKNPS-------------VHVGDTIIFKHKFNNSNLYIFKNKNAFNLC 62
            +T+  V   + W  PS               VGD++ F    N  N++  + K +F+ C
Sbjct: 2   QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDAC 61

Query: 63  NFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPSPTP 122
           NF  +       ++         G  YF    G+   C+   QKLSI V A ++T S  P
Sbjct: 62  NFVNSDNDVE-RTSPVIERLDELGMHYFVCTVGT--HCSNG-QKLSINVVAANATVSMPP 117

Query: 123 STEKPPMMAAPTPAPGGIVSSSPS 146
            +  PP    P P    +   SPS
Sbjct: 118 PSSSPPSSVMPPPV---MPPPSPS 138
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 99.97
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 99.97
2cbp_A96 Cucumber basic protein; electron transport, phytoc 99.96
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 99.93
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.18
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.13
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.08
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.91
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.89
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.88
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.83
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.82
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.78
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.77
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.72
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.72
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.7
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.69
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.69
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.63
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.51
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 98.47
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 98.15
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 98.1
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 98.07
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 98.01
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 97.88
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.85
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 97.79
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.74
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 97.72
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.67
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 97.64
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 97.56
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 97.55
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 97.54
3c75_A132 Amicyanin; copper proteins, electron transfer comp 97.53
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 97.27
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 97.03
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 96.77
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 96.45
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 96.38
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 95.93
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 95.6
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 95.24
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 95.13
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 95.05
1oe1_A336 Dissimilatory copper-containing nitrite reductase; 87.72
1kbv_A327 ANIA, major outer membrane protein PAN 1; ANIA[NO2 87.21
1mzy_A333 Copper-containing nitrite reductase; mutant M182T, 85.43
3gdc_A288 Multicopper oxidase; beta sandwich, plasmid, oxido 84.28
2zoo_A 442 Probable nitrite reductase; electron transfer, ele 83.43
3gdc_A288 Multicopper oxidase; beta sandwich, plasmid, oxido 81.11
1cyx_A205 CYOA; electron transport; 2.30A {Escherichia coli} 80.1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=4.9e-34  Score=234.01  Aligned_cols=98  Identities=30%  Similarity=0.493  Sum_probs=85.8

Q ss_pred             cceEEEecCCCCCCCC-------------ceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEE
Q 042860           16 QSATIFVDGISEWKNP-------------SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWH   81 (235)
Q Consensus        16 ~A~~~~VGg~~GW~~p-------------tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~   81 (235)
                      +|++|+|||+.||+.+             +|+|||+|+|+|+.++|||+||.+|++|+.|+.++++. +++|++   +|+
T Consensus         2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~---~v~   78 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSP---VIE   78 (138)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSC---EEE
T ss_pred             CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCe---EEE
Confidence            5789999999999764             89999999999999899999988999999999999884 777765   799


Q ss_pred             c-CCceeEEEEEcCCCCCccccCCceeEEEEeccCCCCC
Q 042860           82 P-SRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPS  119 (235)
Q Consensus        82 L-~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~~~~ps  119 (235)
                      | +++|++||||  ++++|| ++||||+|+|....+.++
T Consensus        79 L~~~~G~~YFic--g~~gHC-~~GmKl~I~V~~~~~~~~  114 (138)
T 1jer_A           79 RLDELGMHYFVC--TVGTHC-SNGQKLSINVVAANATVS  114 (138)
T ss_dssp             ECCSSEEEEEEC--CSTTTG-GGTCEEEEEEECCC----
T ss_pred             eccCCcCEEEEc--CCCCcc-ccCCEEEEEEcCCCCCCC
Confidence            9 9999999999  589999 999999999998655433
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ... Back     alignment and structure
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Back     alignment and structure
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis} Back     alignment and structure
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Back     alignment and structure
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 235
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 4e-10
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 1e-08
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 9e-07
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 4e-05
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 17  SATIF-VDGISEWKNPS-------------VHVGDTIIFKHKFNNSNLYIFKNKNAFNLC 62
            +T+  V   + W  PS               VGD++ F    N  N++  + K +F+ C
Sbjct: 2   QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDAC 61

Query: 63  NFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVS 115
           NF  +       ++         G  YF    G+   C+   QKLSI V A +
Sbjct: 62  NFVNSDNDVE-RTSPVIERLDELGMHYFVCTVGT--HCSN-GQKLSINVVAAN 110
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 99.96
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 99.96
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 99.96
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.92
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 98.96
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 98.96
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.9
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.89
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.83
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.81
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.71
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.69
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.67
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.66
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.6
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.56
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.5
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.48
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.41
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.12
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.8
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 97.62
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.5
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 97.45
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 97.39
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.36
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 97.14
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 96.9
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 96.7
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 96.55
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 96.35
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 95.96
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 95.78
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 95.55
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 95.25
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 92.52
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 92.51
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 92.28
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 92.18
d1kv7a1140 multi-copper oxidase CueO {Escherichia coli [TaxId 91.23
d1kcwa2146 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 90.62
d1hfua1131 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 90.31
d2j5wa2145 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 89.35
d1sddb2139 Coagulation factor V {Cow (Bos taurus) [TaxId: 991 85.63
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 85.56
d1cyxa_158 Quinol oxidase (CyoA) {Escherichia coli [TaxId: 56 84.3
d1v10a1136 Laccase {Rigidoporus lignosus [TaxId: 219653]} 82.56
d2j5wa5149 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 80.03
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.96  E-value=2.1e-30  Score=198.99  Aligned_cols=87  Identities=22%  Similarity=0.405  Sum_probs=78.9

Q ss_pred             eEEEecCCCCCCC--------CceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEEcCCceeE
Q 042860           18 ATIFVDGISEWKN--------PSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWHPSRPGFF   88 (235)
Q Consensus        18 ~~~~VGg~~GW~~--------ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~L~~~G~~   88 (235)
                      +.|+|||+.||+.        ++|++||+|+|+|+++.|||+|| +|++|++|+.++++. +++|++   +|.|++ |++
T Consensus         1 A~y~VGg~~GW~~~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V-~~~~Y~~C~~~~~~~~~~~G~~---~v~L~~-G~~   75 (96)
T d2cbpa_           1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVV-NQGGFSTCNTPAGAKVYTSGRD---QIKLPK-GQS   75 (96)
T ss_dssp             CEEETTGGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEE-CHHHHHHTCCCTTCEEECSSEE---EEECCS-EEE
T ss_pred             CEEEcCCCCCCCcCHHHHhCCCcEecCCEEEEecCCCCceEEEE-ChHHcCccCCCCCcccccCCCe---EEEeCC-CCC
Confidence            4799999999986        49999999999999999999999 999999999999874 777765   688986 999


Q ss_pred             EEEEcCCCCCccccCCceeEEEEe
Q 042860           89 YFTFNNGSLQTCNKSSQKLSIKVS  112 (235)
Q Consensus        89 YFiCssg~~~HC~~~GqKl~I~V~  112 (235)
                      ||||  +.++|| ++||||+|+|+
T Consensus        76 YFic--~~~~hC-~~G~Kl~V~Vl   96 (96)
T d2cbpa_          76 YFIC--NFPGHC-QSGMKIAVNAL   96 (96)
T ss_dssp             EEEC--CSTTTG-GGTCEEEEEEC
T ss_pred             EEEe--CCCCcC-cCCCEEEEEEC
Confidence            9999  589999 99999999985
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]} Back     information, alignment and structure
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure